Citrus Sinensis ID: 042924

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
DAALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYSDGVICIRESEDRAVQKYVTEENYKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIVRLSIK
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHccccHHHHHHHHHccccHHHHHHccccHHcccHHcccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccEEHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcHHHHHccccccccHHHHHHHcccHHHHHHHHHccccHHHHccccccccHHHHHHHcccHHHHHHHHHHcHHHHHccccccccHHHHHHHcccHHHHHHHHHccccHHHHHcccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccHHHHHHHHHHccHHHHccccccccHHHHHHHcccccEccHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccHHHHEEEHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
DAALSKLLEIKKNLIketdqygwtpihYAAYYGNYGTVNLLLETdqsasniadkDRKMTALHLAAGKGDARIVEAIISknpecyelvdnrgwnFLHYAVVSFRVEKLTNLlennplarslinegdakgntplHVLAairpnefdvDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKdvgrgqysdgviCIRESEDRAVQKYVteenykdtRASHLVVAALIATVAFAAAftipggyrsengtAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIVRLSIK
Flexible Loop (DISEMBL)
DAALSKLLEIKKNliketdqygwTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQAnydavnkqivSVRHIFNYGYPELKEEIQKLSKDVGRGQysdgviciresedrAVQKYVTeenykdtraSHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIVRLSIK
Low Complexity Region (SEG)
DAAlsklleikknlikeTDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYSDGVICIRESEDRAVQKYVTEENYKDTRASHlvvaaliatvafaaaftiPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIVRLSIK
Disordered region (IsUnstruct)
******LLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETD***********KMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYSDGVICIRESEDRAVQKYVTEENYKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIVRL***
Disordered Region (DISOPRED)
DAALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYSDGVIC*******************DTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIVRLSIK
Disordered Region (DISEMBL)
DAALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYSDGVICIRESEDRAVQKYVTEENYKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIVRLSIK
Disordered Region (DISPRO)
DAALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYSDGVICIRESEDRAVQKYVTEENYKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIVRLSIK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
DAALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYSDGVICIRESEDRAVQKYVTEENYKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIVRLSIK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.771	0.515	0.265	7e-17
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.949	0.643	0.270	7e-15
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.881	0.530	0.256	2e-14
Q7Z020	1296	Transient receptor potent	yes	no	0.405	0.111	0.283	1e-08
Q8BTI7	1076	Serine/threonine-protein	no	no	0.4	0.131	0.286	8e-08
P0CS66	776	Palmitoyltransferase AKR1	yes	no	0.504	0.230	0.288	1e-07
P0CS67	776	Palmitoyltransferase AKR1	N/A	no	0.504	0.230	0.288	1e-07
Q02989	1411	Alpha-latroinsectotoxin-L	N/A	no	0.380	0.095	0.342	3e-07
Q8BLA8	1125	Transient receptor potent	yes	no	0.526	0.166	0.268	4e-07
Q8NB46	1076	Serine/threonine-protein	yes	no	0.4	0.131	0.286	5e-07

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 140/316 (44%), Gaps = 42/316 (13%)

Query: 4   LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHL 63
           + +LL +   L +  D    +P++ AA   +   VN +L+ D S + I  K+ K T+LH 
Sbjct: 110 VKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGK-TSLHT 168

Query: 64  AAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINE 123
           A   G  RIV+A+I K+     + D +G   LH AV    +E +  +L+ +    +++NE
Sbjct: 169 AGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADY---TILNE 225

Query: 124 GDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFN-YGYPELKEEIQK 182
            D KGNT LH+       +    L+  T    +A+N Q  +   + +   Y E   EI +
Sbjct: 226 RDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINE 285

Query: 183 LSKDVGRGQYSDGVICIRESEDRAVQKYVTE----------------------------- 213
              + G      G    RE E RA+++ V++                             
Sbjct: 286 ALVEAG---AKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKL 342

Query: 214 --ENYKDTRASHLVVAALIATVAFAAAFTIPGGYRSEN---GTAILRRNTAFQAFIVADS 268
             E  ++T  S  VVA L A++AF A F +PG Y +E    G A +   T F+ F + ++
Sbjct: 343 HREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNA 402

Query: 269 IAMVFSLSAVFTHFLM 284
            ++  SL+ V     +
Sbjct: 403 TSLFISLAVVVVQITL 418

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 164/396 (41%), Gaps = 59/396 (14%)

Query: 4   LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHL 63
           L  L+E    L    D    T +H AA  G+   V  LL+     + IA  + K TALH 
Sbjct: 107 LDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGK-TALHS 165

Query: 64  AAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINE 123
           AA  G   IV+ +I K       VD +G   LH AV     E +  L+E +    SLIN 
Sbjct: 166 AARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADG---SLINS 222

Query: 124 GDAKGNTPLHVLAAIRPNEFDV--DLVRKTQANYDAVNKQIVSVRHIF-NYGYPELKEEI 180
            D KGNTPLH+  A+R N  ++   +++  + +  AVNK   +   I    G  E+   +
Sbjct: 223 ADNKGNTPLHI--AVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLL 280

Query: 181 QKLSKDVGRG-------QYSDGVICIRES--------------------EDRAVQKYVTE 213
           QK+     R        + S     ++E+                    E + + K V +
Sbjct: 281 QKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNK 340

Query: 214 ---ENYKDTRASHLVVAALIATVAFAAAFTIPGGYRSEN---------GTAILRRNTAFQ 261
              E   +   S  +VA LIATVAFAA F +PG Y  +          G A       F 
Sbjct: 341 MHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFL 400

Query: 262 AFIVADSIAMVFSLSAVFTHFLMSFIIEETKD-----FNEDLLLASVWFTI--FSMGAMV 314
            F+V DS A+  SL+ V     +  I    K       N+ + +A +  ++   S+  +V
Sbjct: 401 IFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVV 460

Query: 315 IAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIV 350
           +       A+ V ++G  I+   +G   +    W++
Sbjct: 461 VGEKEKPLAVGVTAIGALIMVSTLGTMCY----WVI 492

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 159/362 (43%), Gaps = 49/362 (13%)

Query: 24  TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC 83
           TP+  AA  G+   VN LL    +   I+  + K  ALHLAA +G   +++A++SK+P+ 
Sbjct: 200 TPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNK-NALHLAARQGHVEVIKALLSKDPQL 258

Query: 84  YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEF 143
              +D +G   LH AV     E +  LL+ +P   +++ + D   NT LHV    +  E 
Sbjct: 259 ARRIDKKGQTALHMAVKGQSSEVVKLLLDADP---AIVMQPDKSCNTALHVATRKKRAEI 315

Query: 144 DVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRG------------- 190
              L+     N + + +   +   I   G P L EE   + + + R              
Sbjct: 316 VELLLSLPDTNANTLTRDHKTALDIAE-GLP-LSEESSYIKECLARSGALRANELNQPRD 373

Query: 191 -------QYSDGVICIRESEDRAVQ---------KYVTEENYKDTRASHLVVAALIATVA 234
                  Q  + V    E   R  +         + +  E   +   S  VVA L ATVA
Sbjct: 374 ELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVA 433

Query: 235 FAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFIIEETKDF 294
           FAA FT+PGG  + +G+A++    +F+ F + +++A+  SL+ V     ++ +  ETK  
Sbjct: 434 FAAIFTVPGG-DNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQ--ITLVRGETKAE 490

Query: 295 NEDLLLASVWFTIFSMGAMVIAFVTGTY----------AMLVPSLGLAIITCLIGLSFFL 344
              + + +    + SM    +AF+  +Y          A LV  +G  I+  ++G   + 
Sbjct: 491 KRVVEVINKLMWLASM-CTSVAFLASSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTYY 549

Query: 345 LV 346
           +V
Sbjct: 550 VV 551

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Z020|TRPA1_DROME Transient receptor potential cation channel subfamily A member 1 OS=Drosophila melanogaster GN=TrpA1 PE=2 SV=3

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 84/155 (54%), Gaps = 11/155 (7%)

Query: 24  TPIHYAAYYGNYGTVNLLLETDQSASNIADKD-RKMTALHLAAGKGDARIVEAIISKNPE 82
           +P+H+AA YG Y TV  LL++++ +  I + D   MT LH+++ +G  R+V+ ++++   
Sbjct: 578 SPLHFAARYGRYNTVRQLLDSEKGSFIINESDGAGMTPLHISSQQGHTRVVQLLLNRGAL 637

Query: 83  CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI--RP 140
            +   D+ G N L  A +S   E +  L   + +   L+++ D  GNT LH LA +  +P
Sbjct: 638 LHR--DHTGRNPLQLAAMSGYTETIELL---HSVHSHLLDQVDKDGNTALH-LATMENKP 691

Query: 141 NEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPE 175
           +   V +    +  Y+ ++  + ++ +   Y YPE
Sbjct: 692 HAISVLMSMGCKLVYNVLD--MSAIDYAIYYKYPE 724

Essential for thermotaxis by sensing environmental temperature. Receptor-activated non-selective cation channel involved in detection of sensations such as temperature. Involved in heat nociception by being activated by warm temperature of about 24-29 degrees Celsius.

Drosophila melanogaster (taxid: 7227)

>sp|Q8BTI7|ANR52_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Mus musculus GN=Ankrd52 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
           D+ G + +H+A + G+  TVNLLL    S  N+ DK  +   LH AA  G   +++ +++
Sbjct: 137 DRSGRSALHHAVHSGHLETVNLLLNKGASL-NVCDKKERQP-LHWAAFLGHLEVLKLLVA 194

Query: 79  KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
           +  +     D +G+  LH A  S ++E + +LL       + I+E +A GNT LH+   +
Sbjct: 195 RGAD-LSCKDRKGYGLLHTAAASGQIEVVKHLLRMG----AEIDEPNAFGNTALHIACYL 249

Query: 139 RPNEFDVDLVRKTQANYDAVNKQIVSVRHI 168
             +   ++LV    AN +  N +  +  H+
Sbjct: 250 GQDAVAIELV-NAGANVNQPNDKGFTPLHV 278

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|P0CS66|AKR1_CRYNJ Palmitoyltransferase AKR1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=AKR1 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 22/201 (10%)

Query: 2   AALSKLLEIKKNL-IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTA 60
           AA++ +L+   +L +   D    TP+H+AA   + GT  LL+++      I   + K T 
Sbjct: 83  AAIAAMLQENPSLNLSARDAQDVTPLHWAAINAHMGTCRLLIDSGADIDAIG-GELKATP 141

Query: 61  LHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSL 120
           L  AA  G   +V  +IS+  +   + D++G+N LH    S  V  L  +L + P+A   
Sbjct: 142 LQWAARNGHLYVVHLLISRGAD-PNIHDSQGFNTLHLITHSSAVMPLLYML-HQPVA--- 196

Query: 121 INEGDAKGNTPLHVLAAIRPNEFDVDLVRK-------------TQANYDAVNKQIVSVRH 167
           I+E D  G+T L + AA + +   VDL+ +             T  ++ AV    VS+ H
Sbjct: 197 IDEKDTDGHTAL-MWAAYQGDALSVDLLIRHGASVNSTDNAGMTPLHWAAVKGNKVSIMH 255

Query: 168 IFNYGYP-ELKEEIQKLSKDV 187
           +   G   + KEE  K  +D+
Sbjct: 256 LVEAGASLDAKEEAGKTPRDM 276

Palmitoyltransferase specific for casein kinase 1.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P0CS67|AKR1_CRYNB Palmitoyltransferase AKR1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=AKR1 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 22/201 (10%)

Query: 2   AALSKLLEIKKNL-IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTA 60
           AA++ +L+   +L +   D    TP+H+AA   + GT  LL+++      I   + K T 
Sbjct: 83  AAIAAMLQENPSLNLSARDAQDVTPLHWAAINAHMGTCRLLIDSGADIDAIG-GELKATP 141

Query: 61  LHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSL 120
           L  AA  G   +V  +IS+  +   + D++G+N LH    S  V  L  +L + P+A   
Sbjct: 142 LQWAARNGHLYVVHLLISRGAD-PNIHDSQGFNTLHLITHSSAVMPLLYML-HQPVA--- 196

Query: 121 INEGDAKGNTPLHVLAAIRPNEFDVDLVRK-------------TQANYDAVNKQIVSVRH 167
           I+E D  G+T L + AA + +   VDL+ +             T  ++ AV    VS+ H
Sbjct: 197 IDEKDTDGHTAL-MWAAYQGDALSVDLLIRHGASVNSTDNAGMTPLHWAAVKGNKVSIMH 255

Query: 168 IFNYGYP-ELKEEIQKLSKDV 187
           +   G   + KEE  K  +D+
Sbjct: 256 LVEAGASLDAKEEAGKTPRDM 276

Palmitoyltransferase specific for casein kinase 1.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q02989|LITA_LATTR Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 3   ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALH 62
           ++SKLL  K   + + D  G TP+HYAA  GN   V+ LL       N A K++K T LH
Sbjct: 649 SVSKLLAGKGAYLNDGDANGMTPLHYAAMTGNLEMVDFLLNQQYININAATKEKKWTPLH 708

Query: 63  LAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLIN 122
           LA       + E ++S       L  N G N LH A  +   + +  LL  N     L  
Sbjct: 709 LAILFKKNDVAERLLSDENLNIRLETNGGINPLHLASATGNKQLVIELLAKNADVTRLT- 767

Query: 123 EGDAKGNTPLHVLAAIRPNE 142
              +KG + LH L  I  NE
Sbjct: 768 ---SKGFSALH-LGIIGKNE 783

Insecticidal presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). The toxin forms channels with 0.55-0.58 nm entrance diameter and a relatively small conductance in planar phospholipid membranes.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q8BLA8|TRPA1_MOUSE Transient receptor potential cation channel subfamily A member 1 OS=Mus musculus GN=Trpa1 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 18/205 (8%)

Query: 14  LIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIV 73
           L+ E D +G TP+H AA  G+   V LLL+  + A  ++D +   TALH A+  G  + +
Sbjct: 475 LLNEGDLHGMTPLHLAAKNGHDKVVQLLLK--KGALFLSDHN-GWTALHHASMGGYTQTM 531

Query: 74  EAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLH 133
           + I+  N +C + +D  G   LH+A      + +  LL  N  A  L+N+  A   + LH
Sbjct: 532 KVILDTNLKCTDRLDEEGNTALHFAAREGHAKAVAMLLSYN--ADILLNKKQA---SFLH 586

Query: 134 VLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS 193
           +    +  E  +  +R         NK+      +F +  P  +  I ++ + +      
Sbjct: 587 IALHNKRKEVVLTTIR---------NKRWDECLQVFTHNSPSNRCPIMEMVEYLPECMKV 637

Query: 194 DGVIC-IRESEDRAVQKYVTEENYK 217
               C I  +ED++ Q Y  E N+K
Sbjct: 638 LLDFCMIPSTEDKSCQDYHIEYNFK 662

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Mus musculus (taxid: 10090)

>sp|Q8NB46|ANR52_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Homo sapiens GN=ANKRD52 PE=1 SV=3

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 8/150 (5%)

Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
           D+ G + +H+A + G+  TVNLLL    S  N+ DK  +   LH AA  G   +++ +++
Sbjct: 137 DRSGRSALHHAVHSGHLETVNLLLNKGASL-NVCDKKERQP-LHWAAFLGHLEVLKLLVA 194

Query: 79  KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
           +  +     D +G+  LH A  S ++E +  LL       + I+E +A GNT LH+   +
Sbjct: 195 RGAD-LGCKDRKGYGLLHTAAASGQIEVVKYLLRMG----AEIDEPNAFGNTALHIACYL 249

Query: 139 RPNEFDVDLVRKTQANYDAVNKQIVSVRHI 168
             +   ++LV    AN +  N +  +  H+
Sbjct: 250 GQDAVAIELV-NAGANVNQPNDKGFTPLHV 278

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
224127106	575	predicted protein [Populus trichocarpa]	0.963	0.594	0.448	2e-74
224127102	434	predicted protein [Populus trichocarpa]	0.935	0.764	0.457	7e-73
255585399	575	ankyrin repeat-containing protein, putat	0.923	0.570	0.437	4e-68
296085927	611	unnamed protein product [Vitis vinifera]	0.943	0.548	0.404	8e-61
359478095	720	PREDICTED: ankyrin repeat-containing pro	0.898	0.443	0.409	9e-58
224126975	381	predicted protein [Populus trichocarpa]	0.904	0.842	0.410	3e-57
359478091	637	PREDICTED: ankyrin-1-like [Vitis vinifer	0.963	0.536	0.391	3e-57
359477901	622	PREDICTED: ankyrin repeat-containing pro	0.923	0.527	0.371	4e-54
255551947	582	ankyrin repeat-containing protein, putat	0.819	0.5	0.390	2e-53
298205151	1006	unnamed protein product [Vitis vinifera]	0.938	0.331	0.387	3e-53

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 165/368 (44%), Positives = 231/368 (62%), Gaps = 26/368 (7%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAY--YGNYGTVNLLLETDQSASNIADKDRKMTALHL 63
           K+LE +K L K TD+ GW+P+HYA+Y  + N   V +LLE D S ++IA+ ++K TALH+
Sbjct: 212 KMLEKEKKLTKTTDENGWSPLHYASYCDWSNAPIVEVLLEYDASTASIAETEKKRTALHI 271

Query: 64  AAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINE 123
           AA +G    ++ I+S+ P C +LVDNRGWN LHYAV S   +     L+   LAR L  E
Sbjct: 272 AAIQGHVDAMKEIVSRCPACCDLVDNRGWNALHYAVASKDTKVFKECLKIPELAR-LQTE 330

Query: 124 GDAKGNTPLHVLAAIRPNEF--------DVDLVRKTQANYDAVNKQIVSVRHIFNYGYPE 175
            D KGNTP H++AA+   +         D +  RK Q     +NK+ +SV  I+   + E
Sbjct: 331 KDDKGNTPFHLIAALAHEQPEWRYVLFNDSNGYRKWQIY--GLNKRKLSVNDIYEEDFGE 388

Query: 176 LKEEIQKLSKDVGRGQYSDGVICIRESEDRAVQKYVTEENYKDTRASHLVVAALIATVAF 235
           +++EI +   D G G        +R   ++       E+     R SHLVVAALIATV F
Sbjct: 389 IQKEILESLNDGGSGPLGRRRKVLRRGRNKE-----GEDALSKARESHLVVAALIATVTF 443

Query: 236 AAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFI----IEET 291
           AAAFT+PGGY+S+ GTAIL +  AF  F+V+D+++MV S+SAVF HFL+S I    +E++
Sbjct: 444 AAAFTLPGGYKSDRGTAILAKKAAFIVFVVSDAMSMVLSISAVFIHFLISLIHAFEMEKS 503

Query: 292 KDFNED----LLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVI 347
           KD +E+    L   +  FT+  MG M+IAF+TGTYA+L PSLGLAI +CLIGLSFF +V 
Sbjct: 504 KDISEEAAIKLFGVATLFTMIGMGIMIIAFITGTYAVLEPSLGLAISSCLIGLSFFFIVY 563

Query: 348 WIVRLSIK 355
            + R+ +K
Sbjct: 564 LVFRIILK 571

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127102|ref|XP_002329396.1| predicted protein [Populus trichocarpa] gi|222870446|gb|EEF07577.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (716), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 166/363 (45%), Positives = 222/363 (61%), Gaps = 31/363 (8%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGT-VNLLLETDQSASNIADKDRKMTALHLA 64
           KLLE +K L K TDQ GW+P+HYAAYY      V++LLE D SA+ IA+ ++K TALH+A
Sbjct: 50  KLLEKEKKLTKTTDQDGWSPLHYAAYYDRSTCIVHVLLENDASAAYIAETEKKRTALHIA 109

Query: 65  AGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEG 124
           A +G    ++ I+S+ P C ELVDNRGWN LHYAV +   E     +E   LAR L  + 
Sbjct: 110 AIQGHVNAMKEIVSRRPACCELVDNRGWNALHYAVATKDREVFKECMEIPELAR-LKTKK 168

Query: 125 DAKGNTPLHVLAAIRP--------------NEFDVDLVRKTQANYDAVNKQIVSVRHIFN 170
           D KGNTP H++AA+                N+  V      +     +N+Q +SV  I+ 
Sbjct: 169 DDKGNTPFHLIAALAHEKKQWRRVLYKYCYNKRVVCGKSPYKREVCGLNEQKLSVNDIYE 228

Query: 171 YGYPELKEEIQKLSKDVGRGQYSDGVICIRESEDRAVQKYVTEENYKDTRASHLVVAALI 230
             + E+++EI K  +DVG G      +   ++E         +E     R SHLVVAALI
Sbjct: 229 GKFGEIQKEILKSLEDVGNGPLGSRKVLKGQNEGE-------KEALSRARESHLVVAALI 281

Query: 231 ATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFI--I 288
           ATV FAAAFT+PGGY+++ GTAIL +  AF  F+++D+++MV S+ AVF HFL+S I   
Sbjct: 282 ATVTFAAAFTLPGGYKNDRGTAILAKKAAFIVFVISDAMSMVLSILAVFIHFLISLIHGF 341

Query: 289 EETKD--FNED----LLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSF 342
           E  KD   +ED    L + +  FT+  MG M+IAFVTGTYA+L PSL LAI TCLIGLSF
Sbjct: 342 EMVKDKVIDEDTTEILFVVATLFTMIGMGTMIIAFVTGTYAVLEPSLELAISTCLIGLSF 401

Query: 343 FLL 345
           F+L
Sbjct: 402 FVL 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 153/350 (43%), Positives = 224/350 (64%), Gaps = 22/350 (6%)

Query: 7   LLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAG 66
           +L+ K +L+ + D+ GWTP+HYAAY G    V  LL  D+  +  ADK R+ TALHLAA 
Sbjct: 229 ILDKKTSLVNKADEMGWTPLHYAAYIGASRVVKQLLGYDKYVAYAADKARRRTALHLAAC 288

Query: 67  KGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDA 126
           + + + +  II K P+C +LVDNRGWN  HYAV+S   + L  LL  NP    L+NE DA
Sbjct: 289 QANIKSMREIIFKCPDCCKLVDNRGWNVAHYAVISKSDDALKILLA-NPSCIYLVNEKDA 347

Query: 127 KGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ-IVSVRHIFNYGYPELKEEIQKLSK 185
           +GNTPLH+LAA++ +     L+   + +  AV +Q  + ++ + +   P  K+EIQ+  +
Sbjct: 348 QGNTPLHLLAALQSHP--RSLMHHAKGHRFAVYRQNFLCIKELLSRS-PCRKKEIQEWMR 404

Query: 186 DVGRGQYSDGVICIRESEDRAVQKYVTEENYKDTRASHLVVAALIATVAFAAAFTIPGGY 245
           D+G G    G I I++ +      ++    ++  R SH+VVAAL+ATV FAAAFT+PGGY
Sbjct: 405 DLGGGPL--GQIVIKKDD------FIL--TFERARDSHIVVAALVATVTFAAAFTLPGGY 454

Query: 246 RS-----ENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFIIEETKDFNEDLLL 300
           RS     + G AIL +N+AF+AF++ D+IAMV S S++F HF ++  +   +     L++
Sbjct: 455 RSNDDEKDQGVAILGKNSAFKAFLITDAIAMVLSTSSLFIHFTLA--LHGYRQRFMWLMV 512

Query: 301 ASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIV 350
            +    +F++ AMV+AFVTGTYA+L PS GLAI TC IGLSFF+ V +I+
Sbjct: 513 YAFRCIVFAIEAMVVAFVTGTYAVLSPSQGLAISTCAIGLSFFIFVFFIL 562

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085927|emb|CBI31368.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (612), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 220/368 (59%), Gaps = 33/368 (8%)

Query: 5   SKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALH 62
           ++LLE K +L KE D+ GW+P+H AAY G+   V  LL+   D+S + +  KD K TALH
Sbjct: 247 ARLLEWKPDLTKEVDENGWSPLHCAAYLGHTAIVEQLLDKSPDKSVTYLGLKDSKKTALH 306

Query: 63  LAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPL--ARSL 120
           +AA +    IV+ ++S +P+C E VD++G N LHYA++S +      +L  N L   R L
Sbjct: 307 IAANRDHRDIVKLLLSHSPDCCEQVDDKGNNVLHYAIMSEQFLAAGGILGRNSLLSVRRL 366

Query: 121 INEGDAKGNTPLHVLAAIR--------PNEFDVDLVRKTQAN-YDAVNKQIVSVRHIFNY 171
           INE DAKG+TPLH+LA+ +         N  D   + K +    D +++  V  R IF  
Sbjct: 367 INEKDAKGDTPLHLLASYQVYDPFLSADNRVDKMALNKDKLTALDIISRDKVKPRRIF-- 424

Query: 172 GYPELKEEIQKLSKD-----VGRGQYSDGV---ICIRESEDRAVQKYVTEENYKDTRASH 223
                KEEI++  ++     VG   + + +       +SED  V+K  +    K    +H
Sbjct: 425 -----KEEIRRQWREWEKVVVGPFSWQEAINKDSGSSKSED--VEKDESISTTKREGETH 477

Query: 224 LVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFL 283
           L+VAAL+ATV FAA FT+PGGY ++NG AIL +  AF+AFIV D++A++ S+SAVF +F 
Sbjct: 478 LIVAALVATVTFAAGFTLPGGY-NDNGMAILTKRAAFKAFIVTDTMAVILSVSAVFVYFF 536

Query: 284 MSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFF 343
           MS  + E +D+ +  L+   + T+ SMGAMV+AF+TG YA+L  S GL I+TC+I   F 
Sbjct: 537 MS--VHEDEDYLDKHLIMGFFLTVLSMGAMVVAFMTGLYAVLPLSSGLPIVTCIICCIFL 594

Query: 344 LLVIWIVR 351
           L   ++ R
Sbjct: 595 LAFYFVFR 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478095|ref|XP_002274107.2| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  230 bits (586), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 144/352 (40%), Positives = 212/352 (60%), Gaps = 33/352 (9%)

Query: 5   SKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALH 62
           ++LLE K +L KE D+ GW+P+H AAY G+   V  LL+   D+S + +  KD K TALH
Sbjct: 262 ARLLEWKPDLTKEVDENGWSPLHCAAYLGHTAIVEQLLDKSPDKSVTYLGLKDSKKTALH 321

Query: 63  LAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPL--ARSL 120
           +AA +    IV+ ++S +P+C E VD++G N LHYA++S +      +L  N L   R L
Sbjct: 322 IAANRDHRDIVKLLLSHSPDCCEQVDDKGNNVLHYAIMSEQFLAAGGILGRNSLLSVRRL 381

Query: 121 INEGDAKGNTPLHVLAAIR--------PNEFDVDLVRKTQAN-YDAVNKQIVSVRHIFNY 171
           INE DAKG+TPLH+LA+ +         N  D   + K +    D +++  V  R IF  
Sbjct: 382 INEKDAKGDTPLHLLASYQVYDPFLSADNRVDKMALNKDKLTALDIISRDKVKPRRIF-- 439

Query: 172 GYPELKEEIQKLSKD-----VGRGQYSDGV---ICIRESEDRAVQKYVTEENYKDTRASH 223
                KEEI++  ++     VG   + + +       +SED  V+K  +    K    +H
Sbjct: 440 -----KEEIRRQWREWEKVVVGPFSWQEAINKDSGSSKSED--VEKDESISTTKREGETH 492

Query: 224 LVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFL 283
           L+VAAL+ATV FAA FT+PGGY ++NG AIL +  AF+AFIV D++A++ S+SAVF +F 
Sbjct: 493 LIVAALVATVTFAAGFTLPGGY-NDNGMAILTKRAAFKAFIVTDTMAVILSVSAVFVYFF 551

Query: 284 MSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIIT 335
           MS  + E +D+ +  L+   + T+ SMGAMV+AF+TG YA+L  S GL I+T
Sbjct: 552 MS--VHEDEDYLDKHLIMGFFLTVLSMGAMVVAFMTGLYAVLPLSSGLPIVT 601

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126975|ref|XP_002329352.1| predicted protein [Populus trichocarpa] gi|222870402|gb|EEF07533.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 145/353 (41%), Positives = 208/353 (58%), Gaps = 32/353 (9%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAY--YGNYG--TVNLLLETDQSASNIADKDRKMTAL 61
           K+L+   +L + TD  GW+P+HYAA+  Y ++G  TV +LLE D SA+ I D +++ TAL
Sbjct: 10  KILKRNPSLTRRTDDDGWSPLHYAAFFPYLSHGVPTVKVLLEHDVSAAYIVDSEKR-TAL 68

Query: 62  HLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLI 121
           HLA  +GD   V AI++  P C ELVDNRGWN LHYA  +  ++      +  P    L 
Sbjct: 69  HLAVVRGDVAAVRAIMNPCPACCELVDNRGWNVLHYAATT--IKGYFYFPQWIPHFEKLK 126

Query: 122 NEGDAKGNTPLHVLAAIR--PNE-FDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKE 178
            E D  GNTPLH+ AA+   P +    D +   +     +NK+ +SV  I    +PE K+
Sbjct: 127 YEKDNDGNTPLHLYAALGNFPQQRLSSDWIHAYK-KMCGLNKRNLSVDDILGRNFPETKK 185

Query: 179 EIQKLSKDVGRGQYSDGVICIRESEDRAVQKYVT-EENYKDTRASHLVVAALIATVAFAA 237
           EI +  KDV  G     +  ++       ++Y++  E   +TR   ++VAAL+ATV FAA
Sbjct: 186 EILESLKDVRSGPLQRPIAMMK-------KEYLSISERGMETR---VLVAALVATVTFAA 235

Query: 238 AFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFI-----IEETK 292
           AFT+PGGY++E G A+L +N AF  F+++D+IAM+ S+SA+F HF  + I     +EE  
Sbjct: 236 AFTMPGGYKNEQGIAVLLKNAAFVVFVISDAIAMLLSISALFMHFCWAPIGTRGQVEEDM 295

Query: 293 DFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLL 345
             N    L     TI ++ AMVIAF+TG+YA+L PS  LAI TC IG +F   
Sbjct: 296 KGNWTSTL-----TICAIPAMVIAFITGSYAVLAPSSWLAITTCFIGAAFIFF 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478091|ref|XP_002270351.2| PREDICTED: ankyrin-1-like [Vitis vinifera]

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 149/381 (39%), Positives = 212/381 (55%), Gaps = 39/381 (10%)

Query: 5   SKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALH 62
           ++LLE K +L KE D+ GW+P+H AAY G    V  LL+   D+S + +  KD K TALH
Sbjct: 262 ARLLEWKPDLTKEVDENGWSPLHCAAYLGYTAIVEQLLDKSPDKSVTYLGIKDSKKTALH 321

Query: 63  LAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPL--ARSL 120
           +AA +    IV+ ++S +P+C E VD++G N LH A++S R     N+  +N L     L
Sbjct: 322 IAANRHHQDIVKRLLSHSPDCCEQVDDKGNNVLHSAIMSERYYAPGNIFRDNSLLWVTGL 381

Query: 121 INEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIF----------- 169
           INE DAKG+TPLH+LA+ +   +D  L    + +  A+NK  ++   I            
Sbjct: 382 INEKDAKGDTPLHLLASYQV--YDPFLSENNRVDKMALNKDKLTALDILSRANVKSGNIS 439

Query: 170 --------------NYGYPELKEEIQKLSKDVGRGQYSDGVICIRESEDRAVQKYVTEEN 215
                         + G    +E I K S   G G   D     + S+D    K ++  N
Sbjct: 440 REVLLKQLKEGEKVDVGPFSWQEAINKDSGSTGNGSADDNGSSSK-SKDVGEDKIIS--N 496

Query: 216 YKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSL 275
                 +HL+VAAL+ATV FAA FT+PGGY S+ G A L +  AF AFIV D+IA+  S+
Sbjct: 497 INRIGETHLIVAALVATVTFAAGFTLPGGYDSD-GMATLTKKAAFIAFIVTDTIAVTLSV 555

Query: 276 SAVFTHFLMSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIIT 335
           SAVF +F MS  + E + F E  L    + T+F +GAM++AF+TG YA+L  S GL I+ 
Sbjct: 556 SAVFVYFFMS--LHEDEGFLEKHLFTGFYLTVFGIGAMMVAFMTGLYAVLPLSSGLPIVA 613

Query: 336 CLIGLSFFLLVIWIV-RLSIK 355
           C+I  SFFLL  + V R ++K
Sbjct: 614 CII-CSFFLLPFYFVLRQAVK 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477901|ref|XP_003632040.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 210/369 (56%), Gaps = 41/369 (11%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTV--NLLLETDQSASNIADKDRKMTALHL 63
           K+LE K  L KE D+ GW+P+H AAY G   T+   LL ++D+S   +  KD   TALH+
Sbjct: 235 KILEWKPALTKEVDEIGWSPLHCAAYLGCSPTIVRELLQKSDKSVPYLGIKDGNKTALHI 294

Query: 64  AAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLA-RSLIN 122
           AA +G  +IVE + S +P+C E VD++G N  H+A++  R     NLL N+ L  R ++N
Sbjct: 295 AANRGHMKIVELLASHSPDCCEQVDDKGNNVFHFAMLKRRWLATGNLLYNSWLGVRGVVN 354

Query: 123 EGDAKGNTPLHVLAAIRPNE------FDVDLVRKTQANY----------DAVNKQIVSVR 166
           E + +G+TP H++++ + ++        VD +     N+          D   ++   +R
Sbjct: 355 EKNGEGDTPFHLISSYQIDDPTFICNLGVDKMAFNNQNFTGMDILSRANDICGRRDFVLR 414

Query: 167 HIFNY-----GYPELKEEIQK---LSKDVGRGQYSDGVICIRESED---RAVQKYVTEEN 215
             + +     G    +EEI++    S+  G+G   D  I I+       + +Q+    EN
Sbjct: 415 RFYRFKEAYVGPLWWREEIKEDDGSSEGKGKGNEGDKGINIKNGSSDFSKVIQR--RGEN 472

Query: 216 YKDTRASHLVVAALIATVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSL 275
                  HL+VAALIATV FAA FT+PGGY    GTA L + TAF+AF+V D++AMV S+
Sbjct: 473 -------HLIVAALIATVTFAAGFTLPGGYNVNEGTATLAKKTAFKAFVVMDTLAMVLSV 525

Query: 276 SAVFTHFLMSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIIT 335
           SA+F  F MS+ +++    N+  ++   + T+ +MGAMV+AF+TG YA+L  S  L + T
Sbjct: 526 SAIFIFFFMSWHVKKA-SLNKH-IIPGFFLTMLAMGAMVMAFMTGLYAVLPESSWLPLFT 583

Query: 336 CLIGLSFFL 344
           C+I  SFFL
Sbjct: 584 CIICCSFFL 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/353 (39%), Positives = 199/353 (56%), Gaps = 62/353 (17%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAY-----YGNYGTVNLLLETDQSASNIADKDRKMTA 60
           ++L+ +K L  E ++ GWTP+HYAAY     +G Y  V  LLE D+SA+ + DKDRK TA
Sbjct: 252 EILKREKRLTIEAEENGWTPLHYAAYGNDQNFGAYVIVQRLLECDKSAAYVVDKDRKRTA 311

Query: 61  LHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSL 120
           LHLAA +G+ RI++ IISK P+C E+ D+RGWN LHYAVVS   E L  +L N+ L   L
Sbjct: 312 LHLAACRGNVRIMKEIISKCPDCCEIADDRGWNVLHYAVVSKNDEALQVILRNSSLI-DL 370

Query: 121 INEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRH--IFNYGYPELKE 178
           +N+ DA+GNTPLH+LA  RP  +    V   + + +A  KQ V  R   I     P+ ++
Sbjct: 371 VNDRDAQGNTPLHLLAVSRP--YLPSFVFDGEDDLNAFYKQNVLSRDDLIHELLQPKYQQ 428

Query: 179 EIQKLSKDVGRGQYSDGVICIRESEDRAVQKYVTEENYKDTRASHLVVAALIATVAFAAA 238
           + Q      G                     Y ++EN  D R          A ++ ++A
Sbjct: 429 KRQXXFTLPG--------------------GYRSDEN--DPRQG-------TAILSKSSA 459

Query: 239 FTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFIIEETKDFNEDL 298
           F                     +AFI+ D+IAMV S  +VF HF++  +  + K +   L
Sbjct: 460 F---------------------EAFIITDTIAMVLSTCSVFIHFIVMLLGYQEKYWW--L 496

Query: 299 LLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIVR 351
           + +++ F +F+MGAMV+AF TGTYA+L PSLGLA+ TC IGLSFF+ V ++++
Sbjct: 497 IRSALLFIMFAMGAMVVAFATGTYAVLSPSLGLAVATCFIGLSFFIYVFYMLK 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205151|emb|CBI17210.3| unnamed protein product [Vitis vinifera]

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 136/351 (38%), Positives = 208/351 (59%), Gaps = 18/351 (5%)

Query: 7   LLEIKKNLIKETDQYGWTPIHYAAYYG-NYGTVNLLLE-TDQSASNIADKDRKMTALHLA 64
           +LE K +L KE D+ GW+P+HYAA  G +   V LLLE +++S + +  KD K TALH+A
Sbjct: 48  ILEWKPDLTKEVDKNGWSPLHYAAERGCDPEIVRLLLEKSEKSVAYLRSKDGKKTALHIA 107

Query: 65  AGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKL--TNLLENNPL-ARSLI 121
           +     +IVE I+S +P C E VD++G N  H+A++    +    ++   N  L +R L+
Sbjct: 108 SFHHHTKIVEKILSHSPGCREQVDDKGNNIFHFAMMKEGDDDFNPSSYFFNYWLRSRGLV 167

Query: 122 NEGDAKGNTPLHVLAAIRPNE-FDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEE- 179
           NE +A+GNTP+H+L+    N+  D   V   + +  A N + ++   I      ++ EE 
Sbjct: 168 NEKNAQGNTPIHLLSL---NQILDFRFVWNYKVDKKAYNNEDLTAYDIILRDKEDISEEK 224

Query: 180 --IQKLSKDVGRGQYSDGVICIRESEDRAVQKYVTE--ENYKDTRASHLVVAALIATVAF 235
             IQ   + V  G+ S      +E++ + +++   E     +    +HL+V+ALI TV F
Sbjct: 225 DRIQSWLEAVTTGRISS--FWEKETKRQEIEQERKEYISQLQKQGETHLIVSALITTVTF 282

Query: 236 AAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSFIIEETKDFN 295
           AA FT+PGGY+ ++G AIL +  AF+AF+V D+IAMV SL AVF HFLM+  + +   F 
Sbjct: 283 AAGFTLPGGYKEDDGQAILSKKAAFRAFVVTDTIAMVSSLCAVFLHFLMT--LHKRGKFL 340

Query: 296 EDLLLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLV 346
           E  LL +   T+  MGAM IAF TG YA+L  S GL+++TC++   FFL +
Sbjct: 341 EKHLLWAFSLTMVGMGAMAIAFATGLYAVLPHSSGLSVLTCILCSCFFLSI 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.859	0.450	0.281	9.8e-16
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.436	0.285	0.325	1.6e-14
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.709	0.409	0.271	1.1e-11
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.450	0.305	0.337	1.6e-11
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.526	0.351	0.299	5.5e-11
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.321	0.164	0.353	1e-10
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.374	0.200	0.338	6.6e-10
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.892	0.494	0.267	8.1e-10
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.456	0.258	0.327	1.7e-09
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.439	0.272	0.253	8.7e-09

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 97/345 (28%), Positives = 152/345 (44%)

Query:    22 GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP 81
             G T + + A  G Y     LL+    +  ++D D     +H+A   G  +I++AI+ + P
Sbjct:   316 GRTCLSFGASLGYYEGFCYLLDKALDSVYVSDDDGSFP-IHMAVKYGYVKILKAILKRCP 374

Query:    82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLE--NNPLARSLINEGDAKGNTPLHVLA--- 136
             +  EL+D    N LH A  + ++E L  +L    +     LINE DA GNTPLH+     
Sbjct:   375 DALELLDRENQNVLHVAAKNGKIEVLKFILRCCKDKNKEKLINEEDANGNTPLHLATKNW 434

Query:   137 ---AIRPNEFD--VDLVRKTQANYDAVNKQIVSVRHI-FNYGYPELKEEIQKLSKDVGRG 190
                 +    +D  VDL  KT  N+D V    ++ +++  +Y + E    +  +S    RG
Sbjct:   435 HPKVVSMLTWDNRVDL--KT-LNHDGVTALDIAEKNMDSSYTFFERLTWMALISAGAPRG 491

Query:   191 QYSDGVICIRESEDRAVQKYVTEENYKDTRASHXXXXXXXXXXXXXXXXXXPGGYRSE-- 248
                     + ++ D           YKD   +                   PGGY     
Sbjct:   492 PKLILSTPVTQNSDGG--------KYKDRVNTLLLVATLVATMTFTAGFTLPGGYNGSVP 543

Query:   249 N-GTAILRRNTAFQAFIVADSIAM---VFSLSAVFTHFL--MSFIIEETKDFNEDLLLAS 302
             N G A L + TAFQ F+V D++AM   + ++ A+    L  +S I+   K FN  L L  
Sbjct:   544 NFGMATLAKKTAFQVFLVFDTLAMYCSIITIVALIWAQLGDLSLIM---KAFNLALPLLG 600

Query:   303 VWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVI 347
             +  T     +M IAF+ GTYA +   L + ++T    L F LL +
Sbjct:   601 LALT-----SMSIAFMAGTYAAVYGLLIVGVLTSSY-LDFLLLFV 639

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
 Identities = 52/160 (32%), Positives = 80/160 (50%)

Query:    24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC 83
             T +H AA  G+   VN LLE   S + IA  + K TALH A+  G  ++++A+++  P  
Sbjct:   137 TALHTAATQGHTEVVNFLLELGSSLAGIAKSNGK-TALHSASRNGHVKVIKALLASEPAI 195

Query:    84 YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEF 143
                +D +G   LH AV    VE +  L++ +   RS IN  D KGNT LH+ A    ++ 
Sbjct:   196 AIRMDKKGQTALHMAVKGTNVEVVEELIKAD---RSSINIADTKGNTALHIAARKGRSQI 252

Query:   144 DVDLVRKTQANYDAVNKQ-IVSVRHIFNYGYPELKEEIQK 182
                L+     +  AVN+    ++      G PE+   +QK
Sbjct:   253 VKLLLANNMTDTKAVNRSGETALDTAEKIGNPEVALILQK 292

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 74/273 (27%), Positives = 121/273 (44%)

Query:    19 DQYGWTPIHYAAYYGNY-GTVNLLLETDQSASN---IADKDRKMTALHLAAGKGDARIVE 74
             ++ G T + Y A  G Y G   +L E D++AS+   +AD D   T +H+AA +G  RI++
Sbjct:   246 NEEGRTCLSYGASMGCYEGIRYILAEFDKAASSLCYVADDDG-FTPIHMAAKEGHVRIIK 304

Query:    75 AIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHV 134
               +   P+  EL++N+  N  H A ++ + + +  LL+ +   + ++NE D  GNTPLH+
Sbjct:   305 EFLKHCPDSRELLNNQCQNIFHVAAIAGKSKVVKYLLKLDE-GKRMMNEQDINGNTPLHL 363

Query:   135 LAAIR-PNEFDVDLVRKTQANYDAVNKQIVSVRHIF-----NYGYPELKEEIQKLSKDVG 188
                 R P   ++ L      N  A+N +  +   I      N  Y   K  I       G
Sbjct:   364 ATKHRYPIVVNM-LTWNDGINLRALNNEGFTALDIAETMKDNNAYVLYKRLIWMALVSAG 422

Query:   189 RGQYSDGVICIRESEDRAVQKYVTEENYKDTRASHXXXXXXXXXXXXXXXXXXPGGYRSE 248
                +   +I +  S+     K  + E YKD+  +                   PGGY S 
Sbjct:   423 -APHGPNLIPLTVSQS---SKQ-SPERYKDSVNTLMVTATLVATVTFAAGLTLPGGYMSS 477

Query:   249 N---GTAILRRNTAFQAFIVADSIAMVFSLSAV 278
                 G A L     F+ F++ ++IAM  S+  V
Sbjct:   478 APHLGMAALVNKLNFKVFLLLNNIAMCTSVVTV 510

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
 Identities = 57/169 (33%), Positives = 81/169 (47%)

Query:    24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC 83
             T +H AA  G+   V  LL+     + IA  + K TALH AA  G   IV+ +I K    
Sbjct:   127 TALHTAASQGHGEIVCFLLDKGVDLAAIARSNGK-TALHSAARNGHTVIVKKLIEKKAGM 185

Query:    84 YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEF 143
                VD +G   LH AV     E +  L+E +    SLIN  D KGNTPLH+  A+R N  
Sbjct:   186 VTRVDKKGQTALHMAVKGQNTEIVDVLMEADG---SLINSADNKGNTPLHI--AVRKNRA 240

Query:   144 DV--DLVRKTQANYDAVNKQIVSVRHIFNY-GYPELKEEIQKLSKDVGR 189
             ++   +++  + +  AVNK   +   I    G  E+   +QK+     R
Sbjct:   241 EIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNAR 289

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 5.5e-11, P = 5.5e-11
 Identities = 59/197 (29%), Positives = 96/197 (48%)

Query:    19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
             D    +P++ AA   +   VN +L+ D S + I  K+ K T+LH A   G  RIV+A+I 
Sbjct:   125 DASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGK-TSLHTAGRYGLLRIVKALIE 183

Query:    79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA- 137
             K+     + D +G   LH AV    +E +  +L+ +    +++NE D KGNT LH+    
Sbjct:   184 KDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQAD---YTILNERDRKGNTALHIATRK 240

Query:   138 IRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFN-YGYPELKEEIQKLSKDVGRGQYSDGV 196
              RP    + L+  T    +A+N Q  +   + +   Y E   EI +   + G      G 
Sbjct:   241 ARPQITSL-LLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGA---KHGR 296

Query:   197 ICIRESEDRAVQKYVTE 213
                RE E RA+++ V++
Sbjct:   297 FIGREDEARALKRAVSD 313

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 41/116 (35%), Positives = 55/116 (47%)

Query:    19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
             D  GWT +  AA+ G Y  V  LLE       + D+D     +H AA KG   IVE  I 
Sbjct:   322 DINGWTCLSLAAHIGYYEGVCNLLERSTKGVYVCDQDGSFP-IHTAAEKGHENIVEEFIK 380

Query:    79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHV 134
             + P    L++  G N LH A  + +   ++N+L  N     L    D  GNTPLH+
Sbjct:   381 RCPGSKHLLNKLGQNVLHIAAKNGKFW-ISNMLIINKDTEHLGVGQDVDGNTPLHL 435

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 48/142 (33%), Positives = 75/142 (52%)

Query:    18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
             TD    T +H AA  G+   VNLLLETD + + IA  + K TALH AA  G   +V+++I
Sbjct:   254 TDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGK-TALHSAARMGHVEVVKSLI 312

Query:    78 SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
              K+P      D +G   LH AV       +  L++ +    ++++  D KGNTPLH+   
Sbjct:   313 GKDPSIGFRTDKKGQTALHMAVKGQNDGIVVELVKPDV---AVLSVEDNKGNTPLHIAT- 368

Query:   138 IRPNEFDVDLVRKTQANYDAVN 159
                N+  + +VR    +++ +N
Sbjct:   369 ---NKGRIKIVR-CLVSFEGIN 386

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 8.1e-10, P = 8.1e-10
 Identities = 94/352 (26%), Positives = 150/352 (42%)

Query:    19 DQYGWTPIHYAAYYGNY-GTVNLLLETDQSASNIADKDRKMT-ALHLAAGKGDARIVEAI 76
             D+ G T +  AAY G Y G VNLL    +S SN+ + D   +  +H+A  KG  +I   +
Sbjct:   254 DEEGRTCLSVAAYVGYYKGVVNLL---HRSTSNVFECDDDGSYPIHMAVEKGRVKIFLKL 310

Query:    77 ISKNPECYELVDNRGWNFLHYAVVSFRVEK-LTNLLENNPLARS-LINEGDAKGNTPLHV 134
             +   P+   L++ +G N LH A  S +    L  +++   L ++ LI E D  GNTPLH 
Sbjct:   311 LKCCPDSQYLLNKQGQNILHIAAKSGKTGTYLLQVIKAYDLIKNDLIMEQDVDGNTPLH- 369

Query:   135 LAAIRPNEFDVDLVRK-TQANYDAV-NKQIVSVRHIF------NYGYPELKEEIQKLSKD 186
             LA +      V+++ K T  N+  + NK  +S   I       NY + E    +  L   
Sbjct:   370 LATLTWRPRTVNILNKFTLGNHLHIRNKDGLSALDIAESNLQSNYVFRERMTLMVLLCTC 429

Query:   187 VGRGQY---SDGVICIRESEDRAVQKYVTEENYKDTRASHXXXXXXXXXXXXXXXXXXPG 243
               RG     + G+     SE  A  KY      KD+                      PG
Sbjct:   430 SPRGFKMIPTSGITLKSRSEKVAGNKY------KDSINVLLLVATLVATVAFAAGIAIPG 483

Query:   244 GYRS---ENGTAILRRNTAFQAFIVADSIAMVFSLSAVFTHFLMSF--IIEETKDFNEDL 298
             G+ S   + G AIL  +     F+V +++AM  S+ A+           +   K F+  L
Sbjct:   484 GFSSSTPKRGIAILDDDDFLSIFLVFNTLAMQSSVLAIVALIWAQLGDPVLVHKTFH--L 541

Query:   299 LLASVWFTIFSMGAMVIAFVTGTYAMLVPSLGLAIITCLIGLSFFLLVIWIV 350
              L +++ ++ SM +   AF  G  A    +  L      I + F  +V +++
Sbjct:   542 ALPALFVSLVSMSS---AFFCGVVATTKHNPWLFDSIIFISIIFLFVVAYLL 590

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 56/171 (32%), Positives = 83/171 (48%)

Query:    24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC 83
             T +H AA  G+   VNLLL+TD   + IA  + K TALH AA  G   +V+++I  +   
Sbjct:   224 TALHTAASQGHTDVVNLLLKTDSHLAKIAKNNGK-TALHSAARMGHREVVKSLIGNDASI 282

Query:    84 YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEF 143
                 D +G   LH AV       +  L++ +P   ++++  D+KGNTPLH        + 
Sbjct:   283 GFRTDKKGQTALHMAVKGQNEGIVLELVKPDP---AILSVEDSKGNTPLHTATNKGRIKI 339

Query:   144 DVDLVRKTQANYDAVNKQIVSVRHIFN-YGYPEL----KEEIQKLSKDVGR 189
                LV     N +A+NK   +   I    G PEL    KE     +KD+G+
Sbjct:   340 VRCLVSFDGINLNAMNKAGDTALDIAEKIGNPELVSVLKEAGAATAKDLGK 390

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
 Identities = 41/162 (25%), Positives = 69/162 (42%)

Query:    24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC 83
             TP+H+A    N     +LLE D+S +   +KD   T LHLAA K    I++    K P  
Sbjct:   186 TPLHHACNANNLEITKMLLEIDESLAERVNKDG-FTPLHLAAMKCSIPILKEFSDKAPRY 244

Query:    84 YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEF 143
             ++++        H A     +     + E+ P   +L+++ D  GNT LH          
Sbjct:   245 FDILTPAKETVFHLAAEHKNILAFYFMAES-PDRNNLLHQVDRYGNTVLHTAVMSSCYSV 303

Query:   144 DVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSK 185
              V +  +T  +  A N + +    + N       E+  K+S+
Sbjct:   304 IVSITYETTIDLSAKNNRGLKAVDLINVD----DEDYSKISR 341

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_120000037 hypothetical protein (575 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
pfam13962	114	pfam13962, PGG, Domain of unknown function	2e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  114 bits (287), Expect = 2e-31
 Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 10/118 (8%)

Query: 213 EENYKDTRASHLVVAALIATVAFAAAFTIPGGYRSEN-----GTAILRRN-TAFQAFIVA 266
            E  + TR S LVVA LIATV FAA FT PGGY  ++     GT IL      F+AF V+
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 267 DSIAMVFSLSAVFTHFLMSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAM 324
           ++IA V SL AV    L+  +   ++      LLA +     S+ ++++AF  G+Y +
Sbjct: 61  NTIAFVASLVAVI--LLLYIVPSFSR--RLPRLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 86.3 bits (214), Expect = 8e-21
 Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 9/129 (6%)

Query: 17  ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAI 76
             D+ G TP+H AA  G+   V LLLE   +  N  D D   T LHLAA  G   IV+ +
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDG-RTPLHLAAKNGHLEIVKLL 59

Query: 77  ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLA 136
           + K        D  G   LH A  +  ++ +  LL++     + +N  D  G TPLH+  
Sbjct: 60  LEKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLKHG----ADVNARDKDGRTPLHL-- 112

Query: 137 AIRPNEFDV 145
           A +    +V
Sbjct: 113 AAKNGHLEV 121

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 71.3 bits (175), Expect = 3e-15
 Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 9/116 (7%)

Query: 2   AALSKLLEIKKNLIKE------TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           AA +  LE+ K L++        D  G TP+H AA  G+   V LLLE      N  DKD
Sbjct: 14  AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKD 72

Query: 56  RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLL 111
              T LHLAA  G+  +V+ ++    +     D  G   LH A  +  +E +  LL
Sbjct: 73  -GNTPLHLAARNGNLDVVKLLLKHGADVNA-RDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 26  IHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYE 85
           +H AA  GN   V LLLE         +     TALHLAA  G+  IV+ ++    +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD----VNLGDTDTALHLAARNGNLEIVKLLLEHGADV-N 55

Query: 86  LVDNRGWNFLHYAVVSFRVEKLTNLLENNP 115
             D  G   LH A  +  +E +  LLE+  
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 2  AALSKLLEIKKNLIKETDQYGW----TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK 57
          AA +  LE+ K L+++          T +H AA  GN   V LLLE    A   A     
Sbjct: 4  AAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLE--HGADVNAKDKDG 61

Query: 58 MTALHLAAGKGDARIVEAIISKNPE 82
           TALHLAA  G+  IV+ ++    +
Sbjct: 62 NTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.3 bits (108), Expect = 8e-07
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 22 GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVEAII 77
          G T +H AA  G    V  LLE      +I   D    TALH+AA  G+  +++ ++
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKG---VDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.0 bits (108), Expect = 9e-06
 Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 13/152 (8%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 65
            L  I    +   D  G  P+H AA  G+   V LLL     A   A      T LHLAA
Sbjct: 57  LLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLL--ASGADVNAKDADGDTPLHLAA 114

Query: 66  -----GKGDARIVEAIISKNP--ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLAR 118
                 +G+  + + ++      +   L D  G   LH+A ++   + +  LLE    A 
Sbjct: 115 LNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLE----AG 170

Query: 119 SLINEGDAKGNTPLHVLAAIRPNEFDVDLVRK 150
           +  N  ++ G T L   A     E    L+ K
Sbjct: 171 ADPNSRNSYGVTALDPAAKNGRIELVKLLLDK 202

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 41 LLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYA 98
          LLE      N  D +   T LHLAA  G   +V+ ++ K      L D+ G   L  A
Sbjct: 1  LLEHGPIDLNATDGNG-NTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 38/164 (23%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA--------- 65
           +   D Y  TPIHYAA  GN   VNLLL      + IA  D  ++ L  A          
Sbjct: 171 VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDD--LSVLECAVDSKNIDTIK 228

Query: 66  ---------GKGDARIVEAIISKNPECYELVDNRGWNF----------LHYAVVSFRVEK 106
                     K D  +++AI +++ E   L+ + G++           LH+A  +  + +
Sbjct: 229 AIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSR 288

Query: 107 LTNLLENNPLARSL-INEGDAKGNTPLHVLAAIRPNEFDVDLVR 149
           L   L    L R   +N  + KG TPL+++A    N +D + +R
Sbjct: 289 LVPKL----LERGADVNAKNIKGETPLYLMAK---NGYDTENIR 325

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 38  VNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNF-LH 96
             LLL    +  N+ D+ +  TALH A    D R+ E ++S        + ++  N  LH
Sbjct: 150 TKLLLSYG-ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN--IPDKTNNSPLH 206

Query: 97  YAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHV 134
           +AV  +    +  LLEN     +  +  D  GNTPLH+
Sbjct: 207 HAVKHYNKPIVHILLENG----ASTDARDKCGNTPLHI 240

Length = 477

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.3 bits (101), Expect = 8e-05
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
           D+ G TP+H+AA  G+   V LLLE    A   +     +TAL  AA  G   +V+ ++ 
Sbjct: 144 DEDGNTPLHWAALNGDADIVELLLE--AGADPNSRNSYGVTALDPAAKNGRIELVKLLLD 201

Query: 79  KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
           K      L  N         V    +  LT+L+ 
Sbjct: 202 KGLHLSLLKFNLEGVANAN-VSKRNILNLTSLII 234

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 42/128 (32%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 65
           KLL  K       D  G +P+H AA YG+Y  + LL++     ++I +K           
Sbjct: 174 KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLID---HGNHIMNK----------- 219

Query: 66  GKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGD 125
                            C       G+  LH A++  R      LL NN    + IN+ D
Sbjct: 220 -----------------C-----KNGFTPLHNAIIHNR--SAIELLINN----ASINDQD 251

Query: 126 AKGNTPLH 133
             G+TPLH
Sbjct: 252 IDGSTPLH 259

Length = 434

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 21 YGWTPIHYAAYYGNYGTVNLLLE 43
           G TP+H AA  G+   V LLLE
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLE 23

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 7  LLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLA 64
          LLE     +  TD  G TP+H AA YG    V  LL+      N+ D D   TAL LA
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGL-TALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIV 73
           I   D YG+TP+HYA Y  N   V  LL+     +N    ++   T LH+A    +  I 
Sbjct: 185 INIKDVYGFTPLHYAVYNNNPEFVKYLLD---LGANPNLVNKYGDTPLHIAILNNNKEIF 241

Query: 74  EAIISKNP 81
           + +++  P
Sbjct: 242 KLLLNNGP 249

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 29/138 (21%)

Query: 15  IKETDQYGWTPIHYAAYYGN----YGTVNLLLE--TDQSASNIADKDRKMTALH--LAAG 66
           +   D+ G TP+H   Y          + LLL    D +A ++      MT L   L + 
Sbjct: 110 VNAKDKVGRTPLH--VYLSGFNINPKVIRLLLRKGADVNALDLYG----MTPLAVLLKSR 163

Query: 67  KGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEG-- 124
             +  ++  +I    + Y  VD+R  + LH+ + SF+            + R LI  G  
Sbjct: 164 NANVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFK--------PRARIVRELIRAGCD 214

Query: 125 ----DAKGNTPLHVLAAI 138
               D  GNTPLH +A  
Sbjct: 215 PAATDMLGNTPLHSMATG 232

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
           I   ++YG TP+HYAA + N      L+      + ++      T L L     + R V 
Sbjct: 250 INARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGN--TPLSLMVRNNNGRAVR 307

Query: 75  AIISKNPECYELVDN 89
           A ++KNP   E V  
Sbjct: 308 AALAKNPS-AETVAA 321

Length = 471

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.95
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
PHA02946	446	ankyin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02874	434	ankyrin repeat protein; Provisional	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.95
PF13962	113	PGG: Domain of unknown function	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA02874	434	ankyrin repeat protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA02946	446	ankyin-like protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA03100	480	ankyrin repeat protein; Provisional	99.94
PHA02798	489	ankyrin-like protein; Provisional	99.94
PHA02989	494	ankyrin repeat protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
PHA03095	471	ankyrin-like protein; Provisional	99.93
PHA03095	471	ankyrin-like protein; Provisional	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA02798	489	ankyrin-like protein; Provisional	99.92
PHA02917	661	ankyrin-like protein; Provisional	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PHA02989	494	ankyrin repeat protein; Provisional	99.91
KOG0508	615	consensus Ankyrin repeat protein [General function	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.88
PHA02917	661	ankyrin-like protein; Provisional	99.88
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.88
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.87
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.87
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.86
KOG0508	615	consensus Ankyrin repeat protein [General function	99.86
PHA02795	437	ankyrin-like protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.85
PHA02730	672	ankyrin-like protein; Provisional	99.85
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
PHA02741	169	hypothetical protein; Provisional	99.84
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
PHA02792	631	ankyrin-like protein; Provisional	99.83
PHA02730	672	ankyrin-like protein; Provisional	99.83
PHA02743	166	Viral ankyrin protein; Provisional	99.82
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.82
PHA02792	631	ankyrin-like protein; Provisional	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.8
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.78
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.77
PHA02884	300	ankyrin repeat protein; Provisional	99.77
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.75
KOG0514	452	consensus Ankyrin repeat protein [General function	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.74
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.71
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.71
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.7
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.65
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.46
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.44
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.43
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.43
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.43
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.42
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.41
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.39
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.38
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.31
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.28
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.26
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.06
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.82
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.8
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.77
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.77
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.74
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.68
PF13606	30	Ank_3: Ankyrin repeat	98.65
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.65
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.62
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.61
PF13606	30	Ank_3: Ankyrin repeat	98.6
KOG0522	560	consensus Ankyrin repeat protein [General function	98.48
KOG0522	560	consensus Ankyrin repeat protein [General function	98.44
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.34
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.25
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.24
KOG2384	223	consensus Major histocompatibility complex protein	98.2
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.11
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.07
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.04
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.83
KOG0511	516	consensus Ankyrin repeat protein [General function	97.76
KOG0511	516	consensus Ankyrin repeat protein [General function	97.71
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.68
KOG2384	223	consensus Major histocompatibility complex protein	97.48
KOG2505	591	consensus Ankyrin repeat protein [General function	96.9
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.79
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.55
KOG2505	591	consensus Ankyrin repeat protein [General function	95.77
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	88.72
COG0598	322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	87.15
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.35
TIGR00383	318	corA magnesium Mg(2+) and cobalt Co(2+) transport	82.93
COG4298	95	Uncharacterized protein conserved in bacteria [Fun	82.26
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	81.39

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-35  Score=231.17  Aligned_cols=181  Identities=26%  Similarity=0.370  Sum_probs=158.2

Q ss_pred             hHHHHHHHhccccccccCC-CCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhh-
Q 042924            2 AALSKLLEIKKNLIKETDQ-YGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK-   79 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~-~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~-   79 (355)
                      ..+++++...|.-++.+|. +|+||||+||+.|+.+++.+|++...-..+.+|+ .|+||||+||..|+.++|+.|+.+ 
T Consensus        17 ~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd-aGWtPlhia~s~g~~evVk~Ll~r~   95 (226)
T KOG4412|consen   17 FKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD-AGWTPLHIAASNGNDEVVKELLNRS   95 (226)
T ss_pred             HHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccc-cCCchhhhhhhcCcHHHHHHHhcCC
Confidence            3578899999966677765 9999999999999999999999754444466776 999999999999999999999999 


Q ss_pred             CCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCccccccc
Q 042924           80 NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVN  159 (355)
Q Consensus        80 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n  159 (355)
                      ++++ +..++.|+|+||+|+.+|+.++.++|++    .|+.++.+|..|.||||-|+..|. .+++++|+..|+.+|..|
T Consensus        96 ~adv-na~tn~G~T~LHyAagK~r~eIaqlLle----~ga~i~~kD~~~qtplHRAAavGk-lkvie~Li~~~a~~n~qD  169 (226)
T KOG4412|consen   96 GADV-NATTNGGQTCLHYAAGKGRLEIAQLLLE----KGALIRIKDKQGQTPLHRAAAVGK-LKVIEYLISQGAPLNTQD  169 (226)
T ss_pred             CCCc-ceecCCCcceehhhhcCChhhHHHHHHh----cCCCCcccccccCchhHHHHhccc-hhhHHHHHhcCCCCCccc
Confidence            8888 8999999999999999999999999999    789999999999999999999995 899999999999999999


Q ss_pred             CCCCcHHHHH-hhCCCchHHHHHHHHHHcCCCCCC
Q 042924          160 KQIVSVRHIF-NYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       160 ~~g~Tpl~~a-~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      +.|+||||.| ++.+.    +.-.+|.++|++-..
T Consensus       170 k~G~TpL~~al~e~~~----d~a~lLV~~gAd~~~  200 (226)
T KOG4412|consen  170 KYGFTPLHHALAEGHP----DVAVLLVRAGADTDR  200 (226)
T ss_pred             ccCccHHHHHHhccCc----hHHHHHHHhccceee
Confidence            9999999999 45543    445556666655443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=2.7e-32  Score=215.55  Aligned_cols=162  Identities=28%  Similarity=0.317  Sum_probs=147.5

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhcc-CCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLET-DQSASNIADKDRKMTALHLAAGKGDARIVEAIISKN   80 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~   80 (355)
                      +++.-||.+-.-.+|.+|..||||||.||+.|+.++|+.|+.+ ++++ |...+ .|.||||+|+..|+.++.++|++.+
T Consensus        52 eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn-~G~T~LHyAagK~r~eIaqlLle~g  129 (226)
T KOG4412|consen   52 EIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-NATTN-GGQTCLHYAAGKGRLEIAQLLLEKG  129 (226)
T ss_pred             hHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecC-CCcceehhhhcCChhhHHHHHHhcC
Confidence            4556666666667899999999999999999999999999998 7776 77777 9999999999999999999999999


Q ss_pred             CccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccC
Q 042924           81 PECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNK  160 (355)
Q Consensus        81 ~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~  160 (355)
                      +.+ +.+|..|.||||.|+.-|+.+++++|+.    .|+.+|.+|+.|+||||.|...++ .++..+|.++|++++..|+
T Consensus       130 a~i-~~kD~~~qtplHRAAavGklkvie~Li~----~~a~~n~qDk~G~TpL~~al~e~~-~d~a~lLV~~gAd~~~edk  203 (226)
T KOG4412|consen  130 ALI-RIKDKQGQTPLHRAAAVGKLKVIEYLIS----QGAPLNTQDKYGFTPLHHALAEGH-PDVAVLLVRAGADTDREDK  203 (226)
T ss_pred             CCC-cccccccCchhHHHHhccchhhHHHHHh----cCCCCCcccccCccHHHHHHhccC-chHHHHHHHhccceeeccc
Confidence            877 9999999999999999999999999999    778999999999999999977776 7888999999999999999


Q ss_pred             CCCcHHHHHhhC
Q 042924          161 QIVSVRHIFNYG  172 (355)
Q Consensus       161 ~g~Tpl~~a~~~  172 (355)
                      +| ||+.+++..
T Consensus       204 e~-t~~~~a~~~  214 (226)
T KOG4412|consen  204 EG-TALRIACNE  214 (226)
T ss_pred             cC-chHHHHHHH
Confidence            99 999988743

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=1.1e-28  Score=229.71  Aligned_cols=165  Identities=23%  Similarity=0.227  Sum_probs=152.8

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++++++..+..+++.|++|.|+||+||.+++.+++++|+++|+++ |..+..-+.||||+|+++|+..+++.|+++|+
T Consensus        58 ~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G~~~vv~lLlqhGA  136 (600)
T KOG0509|consen   58 ETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNGHISVVDLLLQHGA  136 (600)
T ss_pred             HHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcCcHHHHHHHHHcCC
Confidence            56888888878889999999999999999999999999999999998 66553389999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCccccccc-C
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVN-K  160 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n-~  160 (355)
                      ++ +.+|.+|.||+|.|++.++.-.+.+++.    .++++|.+|.+|+||||+|+.+|+... +..|++.|++++..| +
T Consensus       137 dp-t~~D~~G~~~lHla~~~~~~~~vayll~----~~~d~d~~D~~grTpLmwAaykg~~~~-v~~LL~f~a~~~~~d~~  210 (600)
T KOG0509|consen  137 DP-TLKDKQGLTPLHLAAQFGHTALVAYLLS----KGADIDLRDNNGRTPLMWAAYKGFALF-VRRLLKFGASLLLTDDN  210 (600)
T ss_pred             CC-ceecCCCCcHHHHHHHhCchHHHHHHHH----hcccCCCcCCCCCCHHHHHHHhcccHH-HHHHHHhcccccccccc
Confidence            99 9999999999999999999999999999    679999999999999999999997444 889999999999998 9


Q ss_pred             CCCcHHHHHhhCC
Q 042924          161 QIVSVRHIFNYGY  173 (355)
Q Consensus       161 ~g~Tpl~~a~~~~  173 (355)
                      +|.||||.|....
T Consensus       211 ~g~TpLHwa~~~g  223 (600)
T KOG0509|consen  211 HGNTPLHWAVVGG  223 (600)
T ss_pred             cCCchHHHHHhcC
Confidence            9999999999554

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=4.4e-28  Score=215.94  Aligned_cols=158  Identities=18%  Similarity=0.117  Sum_probs=88.5

Q ss_pred             CChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCc-hHHHHHHh
Q 042924           22 GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGW-NFLHYAVV  100 (355)
Q Consensus        22 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~  100 (355)
                      |+||||+|+..|+.++++.|++.|+++ +.++. .|+||||+|+..|+.++++.|++.++++ +.++..|+ ||||+|+.
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~-~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~  137 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMDD-SQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVM  137 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHH
Confidence            344444444444445555554444443 44443 4555555555555555555555555544 33444442 45555555


Q ss_pred             cCChhHHHHHHhcChhhhhhhccCC-CCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcH-HHHHhhCCCchHH
Q 042924          101 SFRVEKLTNLLENNPLARSLINEGD-AKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSV-RHIFNYGYPELKE  178 (355)
Q Consensus       101 ~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tp-l~~a~~~~~~~~~  178 (355)
                      .|+.+++++|++..    .  +..| ..|+||||+|++.|+ .+++++|+++|++++.+|..|.|| ||+|+...   ..
T Consensus       138 ~g~~eivk~LL~~~----~--~~~d~~~g~TpLh~Aa~~g~-~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~---~~  207 (284)
T PHA02791        138 LNDVSIVSYFLSEI----P--STFDLAILLSCIHITIKNGH-VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK---DL  207 (284)
T ss_pred             cCCHHHHHHHHhcC----C--cccccccCccHHHHHHHcCC-HHHHHHHHHCCCCCCcccCCCCChHHHHHHHcC---CH
Confidence            55555555555421    1  1122 246777777777774 677777777777777777777765 77777554   45


Q ss_pred             HHHHHHHHcCCCCC
Q 042924          179 EIQKLSKDVGRGQY  192 (355)
Q Consensus       179 ~i~~~l~~~~~~~~  192 (355)
                      +++++|.+.|.+..
T Consensus       208 e~v~lLl~~Ga~in  221 (284)
T PHA02791        208 EMLQALFKYDINIY  221 (284)
T ss_pred             HHHHHHHHCCCCCc
Confidence            66777777666554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=8.1e-28  Score=228.44  Aligned_cols=179  Identities=17%  Similarity=0.140  Sum_probs=150.4

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE   82 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   82 (355)
                      .++.|+ +.+.+++.++.+|.||||+|+..|+.+++++|++.|+++ +..+. ++.||||.|+..|+.++++.|++.+++
T Consensus        17 iv~~Ll-~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~~~~   93 (413)
T PHA02875         17 IARRLL-DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYP-DIESELHDAVEEGDVKAVEELLDLGKF   93 (413)
T ss_pred             HHHHHH-HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCC-CcccHHHHHHHCCCHHHHHHHHHcCCc
Confidence            455555 456778899999999999999999999999999999876 66665 788999999999999999999988887


Q ss_pred             cccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCC
Q 042924           83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQI  162 (355)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g  162 (355)
                      ..+..+.+|+||||+|+..|+.++++.|++    .|++++.+|.+|+||||+|+..|+ .+++++|+++|++++.+|..|
T Consensus        94 ~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~----~gad~~~~~~~g~tpLh~A~~~~~-~~~v~~Ll~~g~~~~~~d~~g  168 (413)
T PHA02875         94 ADDVFYKDGMTPLHLATILKKLDIMKLLIA----RGADPDIPNTDKFSPLHLAVMMGD-IKGIELLIDHKACLDIEDCCG  168 (413)
T ss_pred             ccccccCCCCCHHHHHHHhCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHhcCCCCCCCCCCC
Confidence            766677788999999999999999999988    678888888889999999998885 888888888999999999999


Q ss_pred             CcHHHHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          163 VSVRHIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       163 ~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                      .||||+|+..+   ..+++++|.+.|.++.
T Consensus       169 ~TpL~~A~~~g---~~eiv~~Ll~~ga~~n  195 (413)
T PHA02875        169 CTPLIIAMAKG---DIAICKMLLDSGANID  195 (413)
T ss_pred             CCHHHHHHHcC---CHHHHHHHHhCCCCCC
Confidence            99999988655   4577788888777664

>PHA02791 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.1e-27  Score=211.60  Aligned_cols=174  Identities=20%  Similarity=0.142  Sum_probs=151.3

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE   82 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   82 (355)
                      .+.++|..++.  +.+|.+|+||||+|+..|+.++++.|++.|++. +..   +|.||||+|+..|+.++++.|++.+++
T Consensus        13 ~~~~~Lis~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~---d~~TpLh~Aa~~g~~eiV~lLL~~Gad   86 (284)
T PHA02791         13 QLKSFLSSKDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALK-NLL---ENEFPLHQAATLEDTKIVKILLFSGMD   86 (284)
T ss_pred             HHHHHHHhCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCC---CCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence            35667777765  578999999999999999999999999999876 433   468999999999999999999999998


Q ss_pred             cccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCC-cHHHHHHhcCCchHHHHHHhccCccccccc-C
Q 042924           83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGN-TPLHVLAAIRPNEFDVDLVRKTQANYDAVN-K  160 (355)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~-T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n-~  160 (355)
                      + +.+|..|+||||+|+.+|+.++++.|++    .|++++.+|..|+ ||||+|+..|+ .+++++|++++.+.  .| .
T Consensus        87 v-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~----~gadin~~~~~g~~TpL~~Aa~~g~-~eivk~LL~~~~~~--~d~~  158 (284)
T PHA02791         87 D-SQFDDKGNTALYYAVDSGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLND-VSIVSYFLSEIPST--FDLA  158 (284)
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCcCccCCCCCcHHHHHHHHcCC-HHHHHHHHhcCCcc--cccc
Confidence            8 8889999999999999999999999999    7788999999884 99999999996 88999999887543  23 3


Q ss_pred             CCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          161 QIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       161 ~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      .|.||||+|+..+   ..+++++|.+.|+++..
T Consensus       159 ~g~TpLh~Aa~~g---~~eiv~lLL~~gAd~n~  188 (284)
T PHA02791        159 ILLSCIHITIKNG---HVDMMILLLDYMTSTNT  188 (284)
T ss_pred             cCccHHHHHHHcC---CHHHHHHHHHCCCCCCc
Confidence            5899999999776   66899999998887643

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=2.3e-27  Score=220.90  Aligned_cols=161  Identities=27%  Similarity=0.319  Sum_probs=147.0

Q ss_pred             HHHHHHhccccccccC-CCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc
Q 042924            4 LSKLLEIKKNLIKETD-QYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE   82 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d-~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   82 (355)
                      +.+.|..+++++|..+ .-|.||||+||++|+..+|.+|+++|+++ +.+|. +|.+|||+|+..|+.-++-+|+.++.+
T Consensus        93 v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~-~G~~~lHla~~~~~~~~vayll~~~~d  170 (600)
T KOG0509|consen   93 VARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDK-QGLTPLHLAAQFGHTALVAYLLSKGAD  170 (600)
T ss_pred             HHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecC-CCCcHHHHHHHhCchHHHHHHHHhccc
Confidence            3445555667789998 78999999999999999999999999999 99998 999999999999999999999999988


Q ss_pred             cccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCC-CCCCcHHHHHHhcCCchHHHHHHhccCcccccccCC
Q 042924           83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGD-AKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ  161 (355)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~  161 (355)
                      . +.+|.+|+||||+|+.+|....+..|++    .++.++..| +.|+||||+|+..|+ ..++.++++.|++.+..|.+
T Consensus       171 ~-d~~D~~grTpLmwAaykg~~~~v~~LL~----f~a~~~~~d~~~g~TpLHwa~~~gN-~~~v~Ll~~g~~~~d~~~~~  244 (600)
T KOG0509|consen  171 I-DLRDNNGRTPLMWAAYKGFALFVRRLLK----FGASLLLTDDNHGNTPLHWAVVGGN-LTAVKLLLEGGADLDKTNTN  244 (600)
T ss_pred             C-CCcCCCCCCHHHHHHHhcccHHHHHHHH----hcccccccccccCCchHHHHHhcCC-cceEehhhhcCCcccccccC
Confidence            7 9999999999999999999887889999    678888888 899999999999995 77777889999999999999


Q ss_pred             CCcHHHHHhhC
Q 042924          162 IVSVRHIFNYG  172 (355)
Q Consensus       162 g~Tpl~~a~~~  172 (355)
                      |+||+++|.+.
T Consensus       245 g~tp~~LA~~~  255 (600)
T KOG0509|consen  245 GKTPFDLAQER  255 (600)
T ss_pred             CCCHHHHHHHh
Confidence            99999999854

>PHA02946 ankyin-like protein; Provisional

Probab=99.95  E-value=3.8e-27  Score=224.19  Aligned_cols=174  Identities=18%  Similarity=0.133  Sum_probs=130.4

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcC--CHHHHHHHhhhCC
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKG--DARIVEAIISKNP   81 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~   81 (355)
                      +.++|...+.++|.+|.+|+||||+||+.|+.++++.|+++|+++ +.+|. .|.||||+|+..+  ..++++.|++.|+
T Consensus        54 iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~-~g~TpLh~A~~~~~~~~e~v~lLl~~Ga  131 (446)
T PHA02946         54 FVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDK-QHKTPLYYLSGTDDEVIERINLLVQYGA  131 (446)
T ss_pred             HHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCC-CCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            444555567789999999999999999999999999999999998 88887 9999999998766  4789999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCc-hHHHHHHhccCcccccccC
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPN-EFDVDLVRKTQANYDAVNK  160 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~-~~~~~lL~~~ga~~~~~n~  160 (355)
                      ++....|..|.|||| |+..++.++++.|++    .|++++.+|..|+||||+|+..++. .+++++|++.|++++.+|.
T Consensus       132 din~~~d~~g~tpL~-aa~~~~~~vv~~Ll~----~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~  206 (446)
T PHA02946        132 KINNSVDEEGCGPLL-ACTDPSERVFKKIMS----IGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDH  206 (446)
T ss_pred             CcccccCCCCCcHHH-HHHCCChHHHHHHHh----ccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCC
Confidence            885456888888887 555677778887777    5566677777777777766654431 3556666677777777777


Q ss_pred             CCCcHHHHHhhCCCchHHHHHHHHH
Q 042924          161 QIVSVRHIFNYGYPELKEEIQKLSK  185 (355)
Q Consensus       161 ~g~Tpl~~a~~~~~~~~~~i~~~l~  185 (355)
                      +|.||||+|+..... ..+++++|.
T Consensus       207 ~G~TpLH~Aa~~~~~-~~~iv~lLl  230 (446)
T PHA02946        207 DGNTPLHIVCSKTVK-NVDIINLLL  230 (446)
T ss_pred             CCCCHHHHHHHcCCC-cHHHHHHHH
Confidence            777777777643211 234444444

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.3e-27  Score=202.71  Aligned_cols=149  Identities=17%  Similarity=0.229  Sum_probs=99.7

Q ss_pred             ccccCCCCChHHHHHHHcC--CHHHHHHhhccCCCcccccccCCCchHHHHHHhc---CCHHHHHHHhhhCCcccccccc
Q 042924           15 IKETDQYGWTPIHYAAYYG--NYGTVNLLLETDQSASNIADKDRKMTALHLAAGK---GDARIVEAIISKNPECYELVDN   89 (355)
Q Consensus        15 ~~~~d~~G~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~   89 (355)
                      ++..|..|.||||+|+..+  +.+++++|+++|+++ +.++...|.||||+|+..   ++.++++.|++.++++ +.+|.
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~  121 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDE  121 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCC
Confidence            4566677777777777643  677777777777766 444422567777776542   3567777777777766 66677


Q ss_pred             CCchHHHHHHh--cCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHH-HhcCCchHHHHHHhccCcccccccCCCCcHH
Q 042924           90 RGWNFLHYAVV--SFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL-AAIRPNEFDVDLVRKTQANYDAVNKQIVSVR  166 (355)
Q Consensus        90 ~g~t~Lh~A~~--~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A-~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl  166 (355)
                      .|+||||+|+.  .++.++++.|++    .|++++.+|.+|+||||.+ +..+ ..+++++|++.|++++.+|..|+||+
T Consensus       122 ~G~TpLh~a~~~~~~~~~iv~~Li~----~gadin~~d~~g~t~Lh~~a~~~~-~~~iv~~Ll~~Gadi~~~d~~g~tpl  196 (209)
T PHA02859        122 DGKNLLHMYMCNFNVRINVIKLLID----SGVSFLNKDFDNNNILYSYILFHS-DKKIFDFLTSLGIDINETNKSGYNCY  196 (209)
T ss_pred             CCCCHHHHHHHhccCCHHHHHHHHH----cCCCcccccCCCCcHHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            77777777665  346677777776    5667777777777777753 3344 36666777777777777777777777


Q ss_pred             HHHh
Q 042924          167 HIFN  170 (355)
Q Consensus       167 ~~a~  170 (355)
                      |+|.
T Consensus       197 ~la~  200 (209)
T PHA02859        197 DLIK  200 (209)
T ss_pred             HHHh
Confidence            7776

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.95  E-value=6.3e-27  Score=223.58  Aligned_cols=180  Identities=22%  Similarity=0.179  Sum_probs=160.1

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.+++++..++..++..+.+|.||||.|++.|+.+++++|++.|+++ +..+. .|.||||.|+..|+.+++++|++.|+
T Consensus        15 ~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~-~~~t~L~~A~~~~~~~iv~~Ll~~g~   92 (434)
T PHA02874         15 EAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADI-NHINT-KIPHPLLTAIKIGAHDIIKLLIDNGV   92 (434)
T ss_pred             HHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            56788898888888999999999999999999999999999999987 66776 89999999999999999999998775


Q ss_pred             cc----------------------ccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcC
Q 042924           82 EC----------------------YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIR  139 (355)
Q Consensus        82 ~~----------------------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~  139 (355)
                      +.                      .+.+|..|+||||+|+..|+.++++.|++    .|++++.+|.+|+||||+|+..+
T Consensus        93 ~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~----~gad~n~~d~~g~tpLh~A~~~~  168 (434)
T PHA02874         93 DTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE----YGADVNIEDDNGCYPIHIAIKHN  168 (434)
T ss_pred             CCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHh----CCCCCCCcCCCCCCHHHHHHHCC
Confidence            42                      25578899999999999999999999999    77899999999999999999999


Q ss_pred             CchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCC
Q 042924          140 PNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       140 ~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~  191 (355)
                      + .+++++|++.|++++.+|.+|.||+|+|+...   ..+++++|.+.|...
T Consensus       169 ~-~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g---~~~iv~~Ll~~g~~i  216 (434)
T PHA02874        169 F-FDIIKLLLEKGAYANVKDNNGESPLHNAAEYG---DYACIKLLIDHGNHI  216 (434)
T ss_pred             c-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHhCCCCC
Confidence            5 88999999999999999999999999999765   567888888877654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5.6e-27  Score=222.69  Aligned_cols=179  Identities=21%  Similarity=0.180  Sum_probs=161.5

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcc
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC   83 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   83 (355)
                      +.++|.+.++..+..+.+|.||||+|+..|+.++++.|++.+....+..+. +|.||||+|+..|+.+++++|++.|+++
T Consensus        50 ~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~~~~~iv~~Ll~~gad~  128 (413)
T PHA02875         50 AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYK-DGMTPLHLATILKKLDIMKLLIARGADP  128 (413)
T ss_pred             HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccC-CCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            445555667778888999999999999999999999999999877566665 8999999999999999999999999998


Q ss_pred             ccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCC
Q 042924           84 YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIV  163 (355)
Q Consensus        84 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~  163 (355)
                       +.+|..|+||||+|+..|+.++++.|++    .|++++.+|..|+||||+|+..|+ .+++++|++.|++++..+.+|.
T Consensus       129 -~~~~~~g~tpLh~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~TpL~~A~~~g~-~eiv~~Ll~~ga~~n~~~~~~~  202 (413)
T PHA02875        129 -DIPNTDKFSPLHLAVMMGDIKGIELLID----HKACLDIEDCCGCTPLIIAMAKGD-IAICKMLLDSGANIDYFGKNGC  202 (413)
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHhCCCCCCcCCCCCC
Confidence             8889999999999999999999999999    778999999999999999999995 8999999999999999998885


Q ss_pred             -cHHHHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          164 -SVRHIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       164 -Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                       ||+++|....   ..+++++|.+.|.++.
T Consensus       203 ~t~l~~A~~~~---~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        203 VAALCYAIENN---KIDIVRLFIKRGADCN  229 (413)
T ss_pred             chHHHHHHHcC---CHHHHHHHHHCCcCcc
Confidence             8899888665   5689999999888875

>PF13962 PGG: Domain of unknown function

Probab=99.95  E-value=1.5e-27  Score=183.64  Aligned_cols=109  Identities=40%  Similarity=0.657  Sum_probs=95.9

Q ss_pred             hhhhHhhhchhhhhHHHHHHHHhHhhccCCCcccCC---Cceeeecccc-hhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042924          213 EENYKDTRASHLVVAALIATVAFAAAFTIPGGYRSE---NGTAILRRNT-AFQAFIVADSIAMVFSLSAVFTHFLMSFII  288 (355)
Q Consensus       213 ~~~~~~~~~s~~vvA~Liatvtfaa~~t~PGg~~~~---~G~~~~~~~~-~f~~F~~~~~~a~~~s~~~~~~~~~~~~~~  288 (355)
                      +||++++++++++||+|||||||||+++||||++||   .|+|++.+++ .|++|+++|++||++|++++++++ +.+  
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~-~~~--   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLI-SGL--   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHH-HHh--
Confidence            479999999999999999999999999999999775   4999999888 999999999999999999999966 444  


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 042924          289 EETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAM  324 (355)
Q Consensus       289 ~~~~~~~~~~l~~~~~~~~~s~~~~~~af~~~~~~v  324 (355)
                      ....++.++.+..+..++++++.+|++||++|+|+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            212344555678999999999999999999999975

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=9.5e-27  Score=224.89  Aligned_cols=141  Identities=26%  Similarity=0.264  Sum_probs=84.1

Q ss_pred             HhhccCCCcccccccCC-CchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhh
Q 042924           40 LLLETDQSASNIADKDR-KMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLAR  118 (355)
Q Consensus        40 ~Ll~~~~~~~~~~~~~~-g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~  118 (355)
                      .|+++|+++ +..+. . |.||||+|+..|+.+++++|++.|+++ +.+|..|+||||.|++.++.++++.|++    .|
T Consensus       152 ~Ll~~gadi-n~~~~-~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~----~g  224 (477)
T PHA02878        152 LLLSYGADI-NMKDR-HKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLE----NG  224 (477)
T ss_pred             HHHHcCCCC-CccCC-CCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHH----cC
Confidence            333334433 33443 3 666666666666666666666666665 5566666666666666666666666666    55


Q ss_pred             hhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccC-CCCcHHHHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          119 SLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNK-QIVSVRHIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       119 ~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~-~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                      +++|.+|.+|+||||+|+..+...+++++|+++|++++.++. .|.||||.|..     ..+++++|.+.|+++.
T Consensus       225 a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~~-----~~~~v~~Ll~~gadin  294 (477)
T PHA02878        225 ASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIK-----SERKLKLLLEYGADIN  294 (477)
T ss_pred             CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHcc-----CHHHHHHHHHCCCCCC
Confidence            666666666666666666543235666666666666666654 56666666621     2345566666555543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=8.7e-26  Score=214.50  Aligned_cols=151  Identities=30%  Similarity=0.336  Sum_probs=138.8

Q ss_pred             ccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhh-hCCcccccccc
Q 042924           11 KKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS-KNPECYELVDN   89 (355)
Q Consensus        11 ~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~   89 (355)
                      ...++|..|++|.||||+||+.|+.+++..|+..|+++ +.+++ ++.||||.|++.|+.++++.||+ .+.-..+..|.
T Consensus       262 ~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~-d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~  339 (929)
T KOG0510|consen  262 EKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNK-DEESPLHFAAIYGRINTVERLLQESDTRLLNESDL  339 (929)
T ss_pred             HHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCC-CCCCchHHHHHcccHHHHHHHHhCcCccccccccc
Confidence            34567899999999999999999999999999999998 88887 99999999999999999999999 55555678899


Q ss_pred             CCchHHHHHHhcCChhHHHHHHhcChhhhhhhc---cCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHH
Q 042924           90 RGWNFLHYAVVSFRVEKLTNLLENNPLARSLIN---EGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVR  166 (355)
Q Consensus        90 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n---~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl  166 (355)
                      .|.||||.|+++||.++++.|++    .|++.+   ..|.+|+||||+|++.|+ ..+++.|+.+|+++..+|+.|.+++
T Consensus       340 ~g~tpLHlaa~~gH~~v~qlLl~----~GA~~~~~~e~D~dg~TaLH~Aa~~g~-~~av~~Li~~Ga~I~~~n~~g~SA~  414 (929)
T KOG0510|consen  340 HGMTPLHLAAKSGHDRVVQLLLN----KGALFLNMSEADSDGNTALHLAAKYGN-TSAVQKLISHGADIGVKNKKGKSAF  414 (929)
T ss_pred             cCCCchhhhhhcCHHHHHHHHHh----cChhhhcccccccCCchhhhHHHHhcc-HHHHHHHHHcCCceeeccccccccc
Confidence            99999999999999999999999    666666   569999999999999995 9999999999999999999999999


Q ss_pred             HH
Q 042924          167 HI  168 (355)
Q Consensus       167 ~~  168 (355)
                      |+
T Consensus       415 ~~  416 (929)
T KOG0510|consen  415 DT  416 (929)
T ss_pred             cc
Confidence            95

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=8.3e-27  Score=225.29  Aligned_cols=159  Identities=25%  Similarity=0.238  Sum_probs=145.4

Q ss_pred             HHHHHHhccccccccCCC-CChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc
Q 042924            4 LSKLLEIKKNLIKETDQY-GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE   82 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~-G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   82 (355)
                      +.++|.+.+++++.+|.+ |.||||+|+..|+.+++++|++.|+++ +.++. .|.||||.|+..|+.++++.|++.|++
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~ga~  226 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDK-TNNSPLHHAVKHYNKPIVHILLENGAS  226 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            455666678889999998 999999999999999999999999987 88887 999999999999999999999999999


Q ss_pred             cccccccCCchHHHHHHhc-CChhHHHHHHhcChhhhhhhccCCC-CCCcHHHHHHhcCCchHHHHHHhccCcccccccC
Q 042924           83 CYELVDNRGWNFLHYAVVS-FRVEKLTNLLENNPLARSLINEGDA-KGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNK  160 (355)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~-~~~~~~~~Ll~~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~  160 (355)
                      + +.+|..|+||||+|+.. ++.++++.|++    .|+++|.++. .|+||||+|+  + ..+++++|+++|+|++.+|.
T Consensus       227 i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~----~gadvn~~~~~~g~TpLh~A~--~-~~~~v~~Ll~~gadin~~d~  298 (477)
T PHA02878        227 T-DARDKCGNTPLHISVGYCKDYDILKLLLE----HGVDVNAKSYILGLTALHSSI--K-SERKLKLLLEYGADINSLNS  298 (477)
T ss_pred             C-CCCCCCCCCHHHHHHHhcCCHHHHHHHHH----cCCCCCccCCCCCCCHHHHHc--c-CHHHHHHHHHCCCCCCCcCC
Confidence            8 88999999999999975 68999999999    7889999986 7999999993  4 37889999999999999999


Q ss_pred             CCCcHHHHHhhC
Q 042924          161 QIVSVRHIFNYG  172 (355)
Q Consensus       161 ~g~Tpl~~a~~~  172 (355)
                      +|.||+++|...
T Consensus       299 ~g~TpL~~A~~~  310 (477)
T PHA02878        299 YKLTPLSSAVKQ  310 (477)
T ss_pred             CCCCHHHHHHHH
Confidence            999999999853

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.8e-26  Score=219.12  Aligned_cols=174  Identities=18%  Similarity=0.116  Sum_probs=144.0

Q ss_pred             HHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccc
Q 042924            7 LLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYEL   86 (355)
Q Consensus         7 lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~   86 (355)
                      .+...+.+++.+|..|.||||+|+..|+.++++.|++.|+++ +.++. .|.||||+|+..|+.+++++|++.++++ +.
T Consensus       109 ~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~-~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~  185 (434)
T PHA02874        109 TILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDD-NGCYPIHIAIKHNFFDIIKLLLEKGAYA-NV  185 (434)
T ss_pred             HHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCC-CCCCHHHHHHHCCcHHHHHHHHHCCCCC-CC
Confidence            344456678999999999999999999999999999999988 78887 9999999999999999999999999988 78


Q ss_pred             cccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHH
Q 042924           87 VDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVR  166 (355)
Q Consensus        87 ~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl  166 (355)
                      .|..|+||||+|+..|+.+++++|++    .|.+++.++.+|+||||.|+..++  ..+.+|+ .|++++.+|.+|.|||
T Consensus       186 ~~~~g~tpL~~A~~~g~~~iv~~Ll~----~g~~i~~~~~~g~TpL~~A~~~~~--~~i~~Ll-~~~~in~~d~~G~TpL  258 (434)
T PHA02874        186 KDNNGESPLHNAAEYGDYACIKLLID----HGNHIMNKCKNGFTPLHNAIIHNR--SAIELLI-NNASINDQDIDGSTPL  258 (434)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCHHHHHHHCCh--HHHHHHH-cCCCCCCcCCCCCCHH
Confidence            89999999999999999999999999    667777788888888888887763  3444444 4777888888888888


Q ss_pred             HHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          167 HIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       167 ~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                      |+|+....  ..+++++|.+.|.++.
T Consensus       259 h~A~~~~~--~~~iv~~Ll~~gad~n  282 (434)
T PHA02874        259 HHAINPPC--DIDIIDILLYHKADIS  282 (434)
T ss_pred             HHHHhcCC--cHHHHHHHHHCcCCCC
Confidence            88875432  3467777777666654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2e-26  Score=223.19  Aligned_cols=172  Identities=28%  Similarity=0.287  Sum_probs=99.9

Q ss_pred             ccccccccCCCCChHHHHHH--HcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcC--CHHHHHHHhhhCCccccc
Q 042924           11 KKNLIKETDQYGWTPIHYAA--YYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKG--DARIVEAIISKNPECYEL   86 (355)
Q Consensus        11 ~~~~~~~~d~~G~tpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~   86 (355)
                      .++.++..|..|.||||+|+  ..|+.++++.|+++|++. +..+. .|.||||+|+..|  +.++++.|++.|+++ +.
T Consensus        95 ~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~  171 (480)
T PHA03100         95 YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNS-DGENLLHLYLESNKIDLKILKLLIDKGVDI-NA  171 (480)
T ss_pred             CCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCC-CCCcHHHHHHHcCCChHHHHHHHHHCCCCc-cc
Confidence            34444555555666666666  555666666666555554 44444 5555666655555  555555555555555 44


Q ss_pred             cccCCchHHHHHHhcCChhHHHHHHhcChh-------------------------------------hhhhhccCCCCCC
Q 042924           87 VDNRGWNFLHYAVVSFRVEKLTNLLENNPL-------------------------------------ARSLINEGDAKGN  129 (355)
Q Consensus        87 ~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~-------------------------------------~~~~~n~~d~~G~  129 (355)
                      +|..|.||||+|+..|+.++++.|++.+..                                     .|+++|.+|.+|+
T Consensus       172 ~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~  251 (480)
T PHA03100        172 KNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGF  251 (480)
T ss_pred             ccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCC
Confidence            555555555555555555555555541100                                     3455666666666


Q ss_pred             cHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCC
Q 042924          130 TPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGR  189 (355)
Q Consensus       130 T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~  189 (355)
                      ||||+|+..++ .+++++|++.|+|++.+|.+|+||+++|....   ..+++++|.+.|.
T Consensus       252 TpL~~A~~~~~-~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~---~~~iv~~Ll~~g~  307 (480)
T PHA03100        252 TPLHYAVYNNN-PEFVKYLLDLGANPNLVNKYGDTPLHIAILNN---NKEIFKLLLNNGP  307 (480)
T ss_pred             CHHHHHHHcCC-HHHHHHHHHcCCCCCccCCCCCcHHHHHHHhC---CHHHHHHHHhcCC
Confidence            66666666664 66666666666666666666666666666443   3455566665554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=2.5e-26  Score=225.99  Aligned_cols=176  Identities=17%  Similarity=0.117  Sum_probs=119.9

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCC--HHHHHHhhccCCCcccccccCCCchHHHHH-----------------
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYGN--YGTVNLLLETDQSASNIADKDRKMTALHLA-----------------   64 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~--~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A-----------------   64 (355)
                      +.++|.+++.++|.+|.+|.||||+|++.|+  .++++.|+++|+++ +.++. .|+||||.|                 
T Consensus       194 IVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~-~G~TPLh~Ai~~a~n~~~EIvkiLie  271 (764)
T PHA02716        194 ILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCV-NGMSPIMTYIINIDNINPEITNIYIE  271 (764)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHhhhccCHHHHHHHHH
Confidence            3444555666777777778888888887774  37778888877776 66776 777887754                 


Q ss_pred             --------------------HhcCCHHHHHHHhhhCCccccccccCCchHHHHHHh--cCChhHHHHHHhcChhhhhhhc
Q 042924           65 --------------------AGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVV--SFRVEKLTNLLENNPLARSLIN  122 (355)
Q Consensus        65 --------------------a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~~~~~~~~~Ll~~~~~~~~~~n  122 (355)
                                          +..|+.++++.|++.|+++ +.+|.+|+||||+|+.  +++.+++++|++    .|+++|
T Consensus       272 ~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe----~GADIN  346 (764)
T PHA02716        272 SLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHE----YGNDLN  346 (764)
T ss_pred             hccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHH----cCCCCc
Confidence                                3446677777777777776 6677778888887653  346677777777    667777


Q ss_pred             cCCCCCCcHHHHHHhc--------------CCchHHHHHHhccCcccccccCCCCcHHHHHh-hCCCchHHHHHHHHHHc
Q 042924          123 EGDAKGNTPLHVLAAI--------------RPNEFDVDLVRKTQANYDAVNKQIVSVRHIFN-YGYPELKEEIQKLSKDV  187 (355)
Q Consensus       123 ~~d~~G~T~Lh~A~~~--------------~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~-~~~~~~~~~i~~~l~~~  187 (355)
                      .+|..|+||||+|+..              + ..+++++|+++|+|++.+|..|+||||.+. ........+++++|.+.
T Consensus       347 ~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~-~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~  425 (764)
T PHA02716        347 EPDNIGNTVLHTYLSMLSVVNILDPETDNDI-RLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISD  425 (764)
T ss_pred             cCCCCCCCHHHHHHHhhhhhccccccccccC-hHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhC
Confidence            7787888888876542              3 367777777788888888888888887322 11111145566666554

>PHA02946 ankyin-like protein; Provisional

Probab=99.94  E-value=6.5e-26  Score=215.80  Aligned_cols=177  Identities=19%  Similarity=0.197  Sum_probs=150.5

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCC--HHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYGN--YGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~--~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++|.+++++++.+|.+|+||||+|+..++  .+++++|+++|+++....+. +|.|||| |+..|+.++++.|++.+.
T Consensus        87 iv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~-~g~tpL~-aa~~~~~~vv~~Ll~~ga  164 (446)
T PHA02946         87 IVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDE-EGCGPLL-ACTDPSERVFKKIMSIGF  164 (446)
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCC-CCCcHHH-HHHCCChHHHHHHHhccc
Confidence            4455666788899999999999999998764  78999999999998444566 9999998 677899999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCC--hhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCC-chHHHHHHhccCcccccc
Q 042924           82 ECYELVDNRGWNFLHYAVVSFR--VEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRP-NEFDVDLVRKTQANYDAV  158 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~--~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~-~~~~~~lL~~~ga~~~~~  158 (355)
                      ++ +.+|..|+||||+|+..++  .++++.|++    .|+++|.+|.+|+||||+|+..+. ..+++++|++ |++++.+
T Consensus       165 d~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~----~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~  238 (446)
T PHA02946        165 EA-RIVDKFGKNHIHRHLMSDNPKASTISWMMK----LGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQ  238 (446)
T ss_pred             cc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCC
Confidence            88 8899999999999987654  588999999    789999999999999999999762 3677888875 8999999


Q ss_pred             cCCCCcHHHHHhhCCCchHHHHHHHHHHcCCC
Q 042924          159 NKQIVSVRHIFNYGYPELKEEIQKLSKDVGRG  190 (355)
Q Consensus       159 n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~  190 (355)
                      |.+|+||||+|+....  ..++.+.|.+.|..
T Consensus       239 d~~G~TpLh~A~~~~~--~~~~~~~Ll~~g~~  268 (446)
T PHA02946        239 NKFGDSPLTLLIKTLS--PAHLINKLLSTSNV  268 (446)
T ss_pred             CCCCCCHHHHHHHhCC--hHHHHHHHHhCCCC
Confidence            9999999999997643  35677788877654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=4.7e-26  Score=224.09  Aligned_cols=184  Identities=12%  Similarity=0.146  Sum_probs=152.1

Q ss_pred             hHHHHHHHhcccccccc-CCCCChHHHHHHHc--CCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCC--HHHHHHH
Q 042924            2 AALSKLLEIKKNLIKET-DQYGWTPIHYAAYY--GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGD--ARIVEAI   76 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~-d~~G~tpLh~Aa~~--g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~--~~~v~~L   76 (355)
                      +.++.|++.++.++|.+ |+.|.||||+|+..  ++.+++++|+++|+++ +.++. .|.||||+|+..|+  .++++.|
T Consensus       156 eiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~-~G~TPLH~Aa~~g~~~~eIVklL  233 (764)
T PHA02716        156 DLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNN-HLITPLHTYLITGNVCASVIKKI  233 (764)
T ss_pred             HHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCCCHHHHHHH
Confidence            45555665543788998 99999999998754  6789999999999988 88887 99999999999995  5999999


Q ss_pred             hhhCCccccccccCCchHHHHHH-------------------------------------hcCChhHHHHHHhcChhhhh
Q 042924           77 ISKNPECYELVDNRGWNFLHYAV-------------------------------------VSFRVEKLTNLLENNPLARS  119 (355)
Q Consensus        77 l~~~~~~~~~~d~~g~t~Lh~A~-------------------------------------~~~~~~~~~~Ll~~~~~~~~  119 (355)
                      ++.|+++ +.+|..|+||||.|+                                     ++|+.++++.|++    .|+
T Consensus       234 Le~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe----~GA  308 (764)
T PHA02716        234 IELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ----PGV  308 (764)
T ss_pred             HHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh----CCC
Confidence            9999998 889999999999763                                     3456677777777    778


Q ss_pred             hhccCCCCCCcHHHHHHhcC-CchHHHHHHhccCcccccccCCCCcHHHHHhhC-----------CCchHHHHHHHHHHc
Q 042924          120 LINEGDAKGNTPLHVLAAIR-PNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYG-----------YPELKEEIQKLSKDV  187 (355)
Q Consensus       120 ~~n~~d~~G~T~Lh~A~~~~-~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~-----------~~~~~~~i~~~l~~~  187 (355)
                      ++|.+|.+|+||||+|+..+ ...+++++|++.|++++.+|..|+||||+|...           ......+++++|.+.
T Consensus       309 dIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~  388 (764)
T PHA02716        309 KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL  388 (764)
T ss_pred             ceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC
Confidence            99999999999999987532 247899999999999999999999999997631           011256889999988


Q ss_pred             CCCCC
Q 042924          188 GRGQY  192 (355)
Q Consensus       188 ~~~~~  192 (355)
                      |.++.
T Consensus       389 GADIn  393 (764)
T PHA02716        389 GADIT  393 (764)
T ss_pred             CCCCC
Confidence            77654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.94  E-value=6.7e-26  Score=219.49  Aligned_cols=160  Identities=24%  Similarity=0.270  Sum_probs=136.4

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHH-----HHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHH--hcCCHHHHH
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHY-----AAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA--GKGDARIVE   74 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~-----Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa--~~g~~~~v~   74 (355)
                      +.++.|+ ..+.+++..+.+|.||||+     |+..|+.++++.|++.|+++ +..+. .|.||||+|+  ..|+.++++
T Consensus        49 ~ivk~Ll-~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~-~g~tpL~~A~~~~~~~~~iv~  125 (480)
T PHA03100         49 DVVKILL-DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDN-NGITPLLYAISKKSNSYSIVE  125 (480)
T ss_pred             HHHHHHH-HcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCC-CCCchhhHHHhcccChHHHHH
Confidence            3455555 4567789999999999999     99999999999999999998 88887 9999999999  999999999


Q ss_pred             HHhhhCCccccccccCCchHHHHHHhcC--ChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccC
Q 042924           75 AIISKNPECYELVDNRGWNFLHYAVVSF--RVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQ  152 (355)
Q Consensus        75 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~--~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g  152 (355)
                      +|++.|+++ +..|..|.||||+|+..+  +.++++.|++    .|++++.+|.+|+||||+|+..|+ .+++++|+++|
T Consensus       126 ~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~----~g~din~~d~~g~tpL~~A~~~~~-~~iv~~Ll~~g  199 (480)
T PHA03100        126 YLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLID----KGVDINAKNRYGYTPLHIAVEKGN-IDVIKFLLDNG  199 (480)
T ss_pred             HHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHH----CCCCcccccCCCCCHHHHHHHhCC-HHHHHHHHHcC
Confidence            999999998 888999999999999999  9999999999    778899999999999999999884 66666666666


Q ss_pred             cccccccCCC------CcHHHHHh
Q 042924          153 ANYDAVNKQI------VSVRHIFN  170 (355)
Q Consensus       153 a~~~~~n~~g------~Tpl~~a~  170 (355)
                      ++++..+..|      .||+|.|+
T Consensus       200 a~~~~~~~~~~~~~~~~t~l~~a~  223 (480)
T PHA03100        200 ADINAGDIETLLFTIFETPLHIAA  223 (480)
T ss_pred             CCccCCCCCCCcHHHHHhHHHHHH
Confidence            6555555544      44555544

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=9.4e-26  Score=218.44  Aligned_cols=180  Identities=14%  Similarity=0.134  Sum_probs=123.2

Q ss_pred             HHHHHhccccccccCCCCChHHHHHHHcC---CHHHHHHhhccCCCcccccccCCCchHHHHHHhcCC---HHHHHHHhh
Q 042924            5 SKLLEIKKNLIKETDQYGWTPIHYAAYYG---NYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGD---ARIVEAIIS   78 (355)
Q Consensus         5 ~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~---~~~v~~Ll~   78 (355)
                      .++|.++++++|.+|.+|+||||+|+..|   +.+++++|+++|+++ +.++. .|.||||+|+..|+   .+++++|++
T Consensus        92 v~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~-~g~tpL~~a~~~~~~~~~~vv~~Ll~  169 (489)
T PHA02798         92 VKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDK-DGFTMLQVYLQSNHHIDIEIIKLLLE  169 (489)
T ss_pred             HHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCC-CCCcHHHHHHHcCCcchHHHHHHHHH
Confidence            34444455666666666777777666654   566667777666665 56665 66677777666665   666777776


Q ss_pred             hCCcccccc-ccCCchHHHHHHhc----CChhHHHHHHhcChh-----------------------------------hh
Q 042924           79 KNPECYELV-DNRGWNFLHYAVVS----FRVEKLTNLLENNPL-----------------------------------AR  118 (355)
Q Consensus        79 ~~~~~~~~~-d~~g~t~Lh~A~~~----~~~~~~~~Ll~~~~~-----------------------------------~~  118 (355)
                      .|+++ +.. +..|.||||.++.+    ++.++++.|++.+..                                   .+
T Consensus       170 ~gadi-n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~  248 (489)
T PHA02798        170 KGVDI-NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSY  248 (489)
T ss_pred             hCCCc-ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhc
Confidence            66666 333 34566677666543    245666666553210                                   12


Q ss_pred             hhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCC
Q 042924          119 SLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       119 ~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~  191 (355)
                      .++|.+|..|+||||+|+..++ .+++++|++.|+|++.+|..|+||++.|....   ..++++.+.+.+.++
T Consensus       249 ~dvN~~d~~G~TPL~~A~~~~~-~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~---~~~iv~~lL~~~~~~  317 (489)
T PHA02798        249 IDINQVDELGFNPLYYSVSHNN-RKIFEYLLQLGGDINIITELGNTCLFTAFENE---SKFIFNSILNKKPNK  317 (489)
T ss_pred             CCCCCcCcCCccHHHHHHHcCc-HHHHHHHHHcCCcccccCCCCCcHHHHHHHcC---cHHHHHHHHccCCCH
Confidence            3567788899999999999985 88999999999999999999999999998665   456777777655544

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2e-25  Score=216.41  Aligned_cols=180  Identities=17%  Similarity=0.142  Sum_probs=149.7

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHc---CCHHHHHHhhccCCCcccccccCCCchHHHHHHhc--CCHHHHHHHhh
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYY---GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGK--GDARIVEAIIS   78 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~--g~~~~v~~Ll~   78 (355)
                      +.++|.++|+++|.+|.+|.||||.|+..   |+.+++++|+++|+++.+.++. .|+||||+|+..  ++.+++++|++
T Consensus        90 iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~-~g~tpLh~a~~~~~~~~~iv~~Ll~  168 (494)
T PHA02989         90 IVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS-RGYNLLHMYLESFSVKKDVIKILLS  168 (494)
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC-CCCCHHHHHHHhccCCHHHHHHHHH
Confidence            45666677888999999999999988765   6799999999999987566776 999999998754  68999999999


Q ss_pred             hCCccccccccCCchHHHHHHhcC----ChhHHHHHHhcChh----------------------------------hhhh
Q 042924           79 KNPECYELVDNRGWNFLHYAVVSF----RVEKLTNLLENNPL----------------------------------ARSL  120 (355)
Q Consensus        79 ~~~~~~~~~d~~g~t~Lh~A~~~~----~~~~~~~Ll~~~~~----------------------------------~~~~  120 (355)
                      .|+++....+..|.||||+|++++    +.+++++|++.+..                                  .+++
T Consensus       169 ~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~ad  248 (494)
T PHA02989        169 FGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIK  248 (494)
T ss_pred             cCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCC
Confidence            999984436889999999998764    78899999885321                                  1234


Q ss_pred             hccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcC
Q 042924          121 INEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVG  188 (355)
Q Consensus       121 ~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~  188 (355)
                      +|.+|.+|+||||+|+..++ .+++++|++.|+|++.+|.+|.|||++|....   ..++++.+.+.+
T Consensus       249 vn~~d~~G~TpL~~Aa~~~~-~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~---~~~iv~~LL~~~  312 (494)
T PHA02989        249 INKKDKKGFNPLLISAKVDN-YEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHG---NIDMLNRILQLK  312 (494)
T ss_pred             CCCCCCCCCCHHHHHHHhcC-HHHHHHHHHcCCCccccCCCCCCHHHHHHHcC---CHHHHHHHHhcC
Confidence            67888899999999999995 89999999999999999999999999999765   456677666643

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2.3e-25  Score=224.17  Aligned_cols=181  Identities=25%  Similarity=0.217  Sum_probs=123.9

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCccccccc----------------------------
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADK----------------------------   54 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~----------------------------   54 (355)
                      .+.++|.+++.++|.+|.+|+||||+||+.|+.+++++|+++|+++ +..+.                            
T Consensus       159 ~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~  237 (682)
T PHA02876        159 LIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNI  237 (682)
T ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            4556777888889999999999999999999999999999998876 44333                            


Q ss_pred             ---------------------------------CCCchHHHHHHhcCCH-HHHHHHhhhCCccccccccCCchHHHHHHh
Q 042924           55 ---------------------------------DRKMTALHLAAGKGDA-RIVEAIISKNPECYELVDNRGWNFLHYAVV  100 (355)
Q Consensus        55 ---------------------------------~~g~tpLh~Aa~~g~~-~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  100 (355)
                                                       ..|.||||+|+..|+. ++++.|++.+.++ +.+|.+|+||||+|+.
T Consensus       238 ~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~  316 (682)
T PHA02876        238 NKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAK  316 (682)
T ss_pred             CCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHH
Confidence                                             1355555555555553 3555555555554 4555566666666666


Q ss_pred             cC-ChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHH
Q 042924          101 SF-RVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEE  179 (355)
Q Consensus       101 ~~-~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~  179 (355)
                      +| ..+.++.|+.    .|++++.+|..|+||||+|+..++...++++|++.|++++.+|..|.||||+|+..+   ..+
T Consensus       317 ~g~~~~~v~~Ll~----~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~---~~~  389 (682)
T PHA02876        317 NGYDTENIRTLIM----LGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRN---NVV  389 (682)
T ss_pred             hCCCHHHHHHHHH----cCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcC---CHH
Confidence            55 3555555555    455666666666666666666554566677777777777777777777777777554   456


Q ss_pred             HHHHHHHcCCCCC
Q 042924          180 IQKLSKDVGRGQY  192 (355)
Q Consensus       180 i~~~l~~~~~~~~  192 (355)
                      +++.|.+.|.++.
T Consensus       390 iv~~Ll~~gad~~  402 (682)
T PHA02876        390 IINTLLDYGADIE  402 (682)
T ss_pred             HHHHHHHCCCCcc
Confidence            6677776665543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.7e-25  Score=205.64  Aligned_cols=180  Identities=14%  Similarity=-0.029  Sum_probs=156.3

Q ss_pred             HHHHHHhcccccc------ccCCCCChHHHHHHH--cCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHH
Q 042924            4 LSKLLEIKKNLIK------ETDQYGWTPIHYAAY--YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEA   75 (355)
Q Consensus         4 v~~lL~~~~~~~~------~~d~~G~tpLh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   75 (355)
                      +.++|..++++++      .++..++|+||+++.  .|+.+++++|+++|+++ +.  . ++.||+|.|+..|+.+++++
T Consensus        92 ~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~-~~~t~lh~A~~~~~~eIVk~  167 (437)
T PHA02795         92 IISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--I-ECLNAYFRGICKKESSVVEF  167 (437)
T ss_pred             HHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--C-CCCCHHHHHHHcCcHHHHHH
Confidence            5577788888877      888999999999999  89999999999999998 54  2 55899999999999999999


Q ss_pred             HhhhCCcccccc-----ccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhc
Q 042924           76 IISKNPECYELV-----DNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRK  150 (355)
Q Consensus        76 Ll~~~~~~~~~~-----d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~  150 (355)
                      |+++|++..+..     +..+.+++|.|..+++.++++.|++    .|+++|.+|.+|+||||+|+..|+ .+++++|++
T Consensus       168 Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs----~GADIN~kD~~G~TpLh~Aa~~g~-~eiVelLL~  242 (437)
T PHA02795        168 ILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP----YIEDINQLDAGGRTLLYRAIYAGY-IDLVSWLLE  242 (437)
T ss_pred             HHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh----CcCCcCcCCCCCCCHHHHHHHcCC-HHHHHHHHH
Confidence            999997543433     2357899999999999999999999    789999999999999999999996 899999999


Q ss_pred             cCcccccccCCCCcHHHHHhhCCC-----chHHHHHHHHHHcCCCCC
Q 042924          151 TQANYDAVNKQIVSVRHIFNYGYP-----ELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       151 ~ga~~~~~n~~g~Tpl~~a~~~~~-----~~~~~i~~~l~~~~~~~~  192 (355)
                      +|++++.+|.+|.||||+|...+.     +...+++++|.+.|.+..
T Consensus       243 ~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        243 NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            999999999999999999996542     125688999988766443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=3.8e-25  Score=222.59  Aligned_cols=180  Identities=22%  Similarity=0.183  Sum_probs=137.1

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcC-CHHHHHHhhccCCCcccccccCCCchHHHHHHhc-CCHHHHHHHhhhCC
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYG-NYGTVNLLLETDQSASNIADKDRKMTALHLAAGK-GDARIVEAIISKNP   81 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g-~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~-g~~~~v~~Ll~~~~   81 (355)
                      +.++|...+.+++.+|.+|.||||+|+..| +.+.++.|++.|+++ +..+. .|.||||+|+.. ++.++++.|++.+.
T Consensus       289 iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~-~g~TpLh~A~~~~~~~~iv~lLl~~ga  366 (682)
T PHA02876        289 LVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADR-LYITPLHQASTLDRNKDIVITLLELGA  366 (682)
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCccc-CCCcHHHHHHHhCCcHHHHHHHHHcCC
Confidence            445566666777888888888888888887 477788888877776 66666 778888888764 46778888888887


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCC
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ  161 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~  161 (355)
                      ++ +.+|..|+||||+|+..++.++++.|++    .|++++..+..|+||||+|+..++...++++|++.|+++|.+|.+
T Consensus       367 di-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~----~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~  441 (682)
T PHA02876        367 NV-NARDYCDKTPIHYAAVRNNVVIINTLLD----YGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKD  441 (682)
T ss_pred             CC-ccCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCC
Confidence            77 7778888888888888888888888887    667778888888888888877665456677888888888888888


Q ss_pred             CCcHHHHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          162 IVSVRHIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                      |+||||+|+..+.  ..+++++|.+.|.++.
T Consensus       442 G~TpLh~Aa~~~~--~~~iv~lLl~~Gad~n  470 (682)
T PHA02876        442 LSTPLHYACKKNC--KLDVIEMLLDNGADVN  470 (682)
T ss_pred             CChHHHHHHHhCC--cHHHHHHHHHCCCCCC
Confidence            8888888875432  3467777777776654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=5.8e-25  Score=212.43  Aligned_cols=182  Identities=24%  Similarity=0.277  Sum_probs=154.3

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcC---CHHHHHHhhccCCCcccccccCCCchHHHHHHhcC-CHHHHHHHhh
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYG---NYGTVNLLLETDQSASNIADKDRKMTALHLAAGKG-DARIVEAIIS   78 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g-~~~~v~~Ll~   78 (355)
                      .++.|+ +.+.+++.+|..|.||||+|+..|   +.++++.|++.|+++ +.++. .|.||||+|+..| +.+++++|++
T Consensus        29 ~v~~Ll-~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~-~g~TpLh~A~~~~~~~~iv~lLl~  105 (471)
T PHA03095         29 EVRRLL-AAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPER-CGFTPLHLYLYNATTLDVIKLLIK  105 (471)
T ss_pred             HHHHHH-HcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCcHHHHHHHHH
Confidence            455555 557778999999999999999998   999999999999988 88887 9999999999999 5999999999


Q ss_pred             hCCccccccccCCchHHHHHH--hcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCC-chHHHHHHhccCccc
Q 042924           79 KNPECYELVDNRGWNFLHYAV--VSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRP-NEFDVDLVRKTQANY  155 (355)
Q Consensus        79 ~~~~~~~~~d~~g~t~Lh~A~--~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~-~~~~~~lL~~~ga~~  155 (355)
                      .|+++ +.+|..|+||||+|+  .+++.++++.|++    .|++++.+|.+|.||||+|+..++ ..+++++|++.|+++
T Consensus       106 ~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~----~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~  180 (471)
T PHA03095        106 AGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLR----KGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADV  180 (471)
T ss_pred             cCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC
Confidence            99998 888999999999999  5567889999999    778899999999999999888653 367889999999999


Q ss_pred             ccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          156 DAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       156 ~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      +..|..|.||+|.+...... ...+++.|.+.|.++..
T Consensus       181 ~~~d~~g~t~Lh~~~~~~~~-~~~i~~~Ll~~g~~~~~  217 (471)
T PHA03095        181 YAVDDRFRSLLHHHLQSFKP-RARIVRELIRAGCDPAA  217 (471)
T ss_pred             cccCCCCCCHHHHHHHHCCC-cHHHHHHHHHcCCCCcc
Confidence            98899999999998854332 56777788777766644

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=5e-25  Score=212.88  Aligned_cols=180  Identities=22%  Similarity=0.188  Sum_probs=128.3

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHH--HcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcC--CHHHHHHHhh
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAA--YYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKG--DARIVEAIIS   78 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g--~~~~v~~Ll~   78 (355)
                      .+.++|.+++.+++.+|..|.||||+|+  ..++.++++.|+++|+++ +..+. .|.||||+|+..+  +.++++.|++
T Consensus        98 ~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~-~g~tpL~~a~~~~~~~~~iv~~Ll~  175 (471)
T PHA03095         98 DVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDL-YGMTPLAVLLKSRNANVELLRLLID  175 (471)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCC-CCCCHHHHHHHcCCCCHHHHHHHHH
Confidence            4556666777888889989999999998  456788899999888887 77776 8888888887765  5788888888


Q ss_pred             hCCccccccccCCchHHHHHHhc--CChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCch-HHHHHHhccCccc
Q 042924           79 KNPECYELVDNRGWNFLHYAVVS--FRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNE-FDVDLVRKTQANY  155 (355)
Q Consensus        79 ~~~~~~~~~d~~g~t~Lh~A~~~--~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~-~~~~lL~~~ga~~  155 (355)
                      .+++. +..|..|+||||+++..  +..++++.|++    .|++++.+|.+|+||||+|+..++.. ..++.|++.|+++
T Consensus       176 ~g~~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~----~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di  250 (471)
T PHA03095        176 AGADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIR----AGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI  250 (471)
T ss_pred             cCCCC-cccCCCCCCHHHHHHHHCCCcHHHHHHHHH----cCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCC
Confidence            88877 44477888888887764  55667777776    56666777777777777777666421 3455666667777


Q ss_pred             ccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          156 DAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       156 ~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                      |.+|.+|+||||+|+..+   ..+++++|.+.|+++.
T Consensus       251 n~~d~~g~TpLh~A~~~~---~~~~v~~LL~~gad~n  284 (471)
T PHA03095        251 NARNRYGQTPLHYAAVFN---NPRACRRLIALGADIN  284 (471)
T ss_pred             CCcCCCCCCHHHHHHHcC---CHHHHHHHHHcCCCCc
Confidence            777777777777776543   3455566666555553

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=2.3e-25  Score=211.66  Aligned_cols=172  Identities=21%  Similarity=0.246  Sum_probs=150.0

Q ss_pred             cccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCccc--------------ccccCCCchHHHHHHhcCCHHHHHHHh
Q 042924           12 KNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASN--------------IADKDRKMTALHLAAGKGDARIVEAII   77 (355)
Q Consensus        12 ~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~--------------~~~~~~g~tpLh~Aa~~g~~~~v~~Ll   77 (355)
                      ...+|..|++|.||||.|+..|+.++++.+|+.++..++              ..|+ +|.||||+||+.|+.+.++.|+
T Consensus       215 ~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~-dg~tpLH~a~r~G~~~svd~Ll  293 (929)
T KOG0510|consen  215 QTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDN-DGCTPLHYAARQGGPESVDNLL  293 (929)
T ss_pred             hcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccc-cCCchHHHHHHcCChhHHHHHH
Confidence            345788888999999999999999999999997765543              3354 8999999999999999999999


Q ss_pred             hhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccc-
Q 042924           78 SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYD-  156 (355)
Q Consensus        78 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~-  156 (355)
                      ..|+++ +.++.++.||||.|+++|+.++++.|++..  .-.++|..|..|+||||+|++.|| ..++++|+++|++.+ 
T Consensus       294 ~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~--~~rllne~D~~g~tpLHlaa~~gH-~~v~qlLl~~GA~~~~  369 (929)
T KOG0510|consen  294 GFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQES--DTRLLNESDLHGMTPLHLAAKSGH-DRVVQLLLNKGALFLN  369 (929)
T ss_pred             HcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCc--CccccccccccCCCchhhhhhcCH-HHHHHHHHhcChhhhc
Confidence            999999 889999999999999999999999999932  346899999999999999999997 999999999999987 


Q ss_pred             --cccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCC
Q 042924          157 --AVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       157 --~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~  191 (355)
                        ..|.+|.||||.|+..+   ....++.|..+|++-
T Consensus       370 ~~e~D~dg~TaLH~Aa~~g---~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  370 MSEADSDGNTALHLAAKYG---NTSAVQKLISHGADI  403 (929)
T ss_pred             ccccccCCchhhhHHHHhc---cHHHHHHHHHcCCce
Confidence              56999999999999665   556777777766554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.1e-24  Score=187.11  Aligned_cols=167  Identities=14%  Similarity=0.101  Sum_probs=140.5

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcC--CHHHHHHHhhhCCccccccc-cCC
Q 042924           15 IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKG--DARIVEAIISKNPECYELVD-NRG   91 (355)
Q Consensus        15 ~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d-~~g   91 (355)
                      .+...+.++||||+|++.|+.++++.|++..    +..+. .|.||||+|+..+  +.+++++|++.++++ +.++ ..|
T Consensus        14 ~~~~~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~-~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g   87 (209)
T PHA02859         14 TDYLFYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCND-LYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNN   87 (209)
T ss_pred             HHHHhhccCcHHHHHHHhCcHHHHHHHHHhh----hccCc-cCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCC
Confidence            3444578899999999999999999999752    45666 8999999999854  899999999999999 6665 589


Q ss_pred             chHHHHHHhc---CChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcC-CchHHHHHHhccCcccccccCCCCcHHH
Q 042924           92 WNFLHYAVVS---FRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIR-PNEFDVDLVRKTQANYDAVNKQIVSVRH  167 (355)
Q Consensus        92 ~t~Lh~A~~~---~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~-~~~~~~~lL~~~ga~~~~~n~~g~Tpl~  167 (355)
                      +||||+|+..   ++.++++.|++    .|+++|.+|.+|.||||+|+... ...+++++|++.|++++.+|.+|.||+|
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~----~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh  163 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILID----SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILY  163 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHH
Confidence            9999998764   47899999999    78999999999999999998742 2488999999999999999999999999


Q ss_pred             HHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          168 IFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       168 ~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      .+.....  ..+++++|.+.|.++..
T Consensus       164 ~~a~~~~--~~~iv~~Ll~~Gadi~~  187 (209)
T PHA02859        164 SYILFHS--DKKIFDFLTSLGIDINE  187 (209)
T ss_pred             HHHHhcC--CHHHHHHHHHcCCCCCC
Confidence            7543222  56788999998876653

>PHA02798 ankyrin-like protein; Provisional

Probab=99.92  E-value=2e-24  Score=209.12  Aligned_cols=181  Identities=17%  Similarity=0.130  Sum_probs=152.1

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHc-----CCHHHHHHhhccCCCcccccccCCCchHHHHHHhcC---CHHHHH
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYY-----GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKG---DARIVE   74 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g---~~~~v~   74 (355)
                      .+.++|.++++++|.+|..|.||||.|+..     ++.++++.|+++|+++ +.++. .|+||||+|+..|   +.++++
T Consensus        52 ~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~-~G~TpLh~a~~~~~~~~~~iv~  129 (489)
T PHA02798         52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNS-DGETPLYCLLSNGYINNLEILL  129 (489)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCC-CcCcHHHHHHHcCCcChHHHHH
Confidence            455566667888999999999999999864     6789999999999997 88887 9999999999876   789999


Q ss_pred             HHhhhCCccccccccCCchHHHHHHhcCC---hhHHHHHHhcChhhhhhhccCC-CCCCcHHHHHHhcC---CchHHHHH
Q 042924           75 AIISKNPECYELVDNRGWNFLHYAVVSFR---VEKLTNLLENNPLARSLINEGD-AKGNTPLHVLAAIR---PNEFDVDL  147 (355)
Q Consensus        75 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~---~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~---~~~~~~~l  147 (355)
                      +|++.|+++ +.+|.+|.||||+|++.++   .++++.|++    .|+++|.+| ..|.||||.++..+   ...+++++
T Consensus       130 ~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~----~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~  204 (489)
T PHA02798        130 FMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE----KGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKL  204 (489)
T ss_pred             HHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHH----hCCCcccccCcCCCcHHHHHHHhccccCCHHHHHH
Confidence            999999998 8899999999999999987   899999999    788898885 57899999887643   12556666


Q ss_pred             HhccCc---------------------------------------ccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcC
Q 042924          148 VRKTQA---------------------------------------NYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVG  188 (355)
Q Consensus       148 L~~~ga---------------------------------------~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~  188 (355)
                      |+++|+                                       |+|.+|..|+||||+|+..+   ..++.++|.+.|
T Consensus       205 Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~---~~~~v~~LL~~G  281 (489)
T PHA02798        205 FVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHN---NRKIFEYLLQLG  281 (489)
T ss_pred             HHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcC---cHHHHHHHHHcC
Confidence            665554                                       55667888999999999665   567889999988


Q ss_pred             CCCCC
Q 042924          189 RGQYS  193 (355)
Q Consensus       189 ~~~~~  193 (355)
                      +++..
T Consensus       282 Adin~  286 (489)
T PHA02798        282 GDINI  286 (489)
T ss_pred             Ccccc
Confidence            87654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.92  E-value=2e-24  Score=213.36  Aligned_cols=175  Identities=14%  Similarity=0.160  Sum_probs=142.8

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHc---CCHHHHHHhhccCCCcccccccCCCchHHHHHHhcC----------
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYY---GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKG----------   68 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g----------   68 (355)
                      +.+++|+. +++.++.+|++|+||||+||..   |+.+++++|+++|+++ +.++. .|+||||.|+..|          
T Consensus        13 ~~~~~l~~-~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~-~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         13 DELKQMLR-DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNW-RQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHh-ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCC-CCCCHHHHHHHcCChhHHHHHHH
Confidence            45777886 5566688899999999998665   7899999999999988 67776 8999999887644          


Q ss_pred             -------------------------CHHHHHHHhhhCCccccccccCCchHHHHH--HhcCChhHHHHHHhcChhhhhhh
Q 042924           69 -------------------------DARIVEAIISKNPECYELVDNRGWNFLHYA--VVSFRVEKLTNLLENNPLARSLI  121 (355)
Q Consensus        69 -------------------------~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~~~~~Ll~~~~~~~~~~  121 (355)
                                               +.+++++|++.|+++ +..|.+|+||||.+  +.+|+.+++++|++    .|+++
T Consensus        90 ~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~----~Ga~v  164 (661)
T PHA02917         90 ALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIE----NGCSV  164 (661)
T ss_pred             HHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHH----cCCCc
Confidence                                     456777788888888 78899999999964  45789999999999    78888


Q ss_pred             ccCCCC---C-----------CcHHHHHHh-----------cCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCch
Q 042924          122 NEGDAK---G-----------NTPLHVLAA-----------IRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPEL  176 (355)
Q Consensus       122 n~~d~~---G-----------~T~Lh~A~~-----------~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~  176 (355)
                      |.+|.+   |           .||||+|+.           .+ ..+++++|++.|+|+|.+|.+|.||||+|...+.. 
T Consensus       165 n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~-~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~-  242 (661)
T PHA02917        165 LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYV-RPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHI-  242 (661)
T ss_pred             cccccccccccccccccccccccHHHHHHhhcccccccccccC-cHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCC-
Confidence            866543   3           599999986           34 47899999999999999999999999999976532 


Q ss_pred             HHHHHHHHHH
Q 042924          177 KEEIQKLSKD  186 (355)
Q Consensus       177 ~~~i~~~l~~  186 (355)
                      ..++++.|.+
T Consensus       243 ~~eivk~Li~  252 (661)
T PHA02917        243 DIDIVKLLMK  252 (661)
T ss_pred             cHHHHHHHHh
Confidence            3477887765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=6e-24  Score=217.11  Aligned_cols=158  Identities=18%  Similarity=0.125  Sum_probs=76.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHh
Q 042924           21 YGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVV  100 (355)
Q Consensus        21 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  100 (355)
                      ++.++||.||..|+.++++.|++.|.++ +..|. .|+||||+|+.+|+.++++.|++.++++ +.+|.+|+||||.|+.
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~  600 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDP-DIGDS-KGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAIS  600 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHH
Confidence            3445555555555555555555555444 44444 4555555555555555555555555444 4445555555555555


Q ss_pred             cCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHH
Q 042924          101 SFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEI  180 (355)
Q Consensus       101 ~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i  180 (355)
                      .|+.++++.|++.    +...  .+..|.++||.|+..|+ .+++++|+++|+|+|.+|.+|.||||+|....   +.++
T Consensus       601 ~g~~~iv~~L~~~----~~~~--~~~~~~~~L~~Aa~~g~-~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g---~~~i  670 (823)
T PLN03192        601 AKHHKIFRILYHF----ASIS--DPHAAGDLLCTAAKRND-LTAMKELLKQGLNVDSEDHQGATALQVAMAED---HVDM  670 (823)
T ss_pred             hCCHHHHHHHHhc----Cccc--CcccCchHHHHHHHhCC-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC---cHHH
Confidence            5555555555441    1111  12234455555555553 44445555555555555555555555554333   3344


Q ss_pred             HHHHHHcCCCC
Q 042924          181 QKLSKDVGRGQ  191 (355)
Q Consensus       181 ~~~l~~~~~~~  191 (355)
                      .++|.++|+++
T Consensus       671 v~~Ll~~GAdv  681 (823)
T PLN03192        671 VRLLIMNGADV  681 (823)
T ss_pred             HHHHHHcCCCC
Confidence            44444444433

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3e-23  Score=201.26  Aligned_cols=145  Identities=19%  Similarity=0.185  Sum_probs=86.3

Q ss_pred             HHHHHhccccccccCCCCChHHHHHHHcC------CHHHHHHhhccCCCcccccccCCCchHHHHHHhc---CCHHHHHH
Q 042924            5 SKLLEIKKNLIKETDQYGWTPIHYAAYYG------NYGTVNLLLETDQSASNIADKDRKMTALHLAAGK---GDARIVEA   75 (355)
Q Consensus         5 ~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g------~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~---g~~~~v~~   75 (355)
                      .++|.++|+++|.++ .|.||||.|+..+      +.+++++|+++|+++ +.++. .|.||||.|+..   |+.+++++
T Consensus        53 v~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~-~g~tpL~~a~~~~~~~~~eiv~~  129 (494)
T PHA02989         53 VKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTF-NGVSPIVCFIYNSNINNCDMLRF  129 (494)
T ss_pred             HHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCC-CCCcHHHHHHHhcccCcHHHHHH
Confidence            344444556666654 4566666665543      345666666666665 66665 666777665543   45667777


Q ss_pred             HhhhCCccccccccCCchHHHHHHhc--CChhHHHHHHhcChhhhhhhcc-CCCCCCcHHHHHHhcC---CchHHHHHHh
Q 042924           76 IISKNPECYELVDNRGWNFLHYAVVS--FRVEKLTNLLENNPLARSLINE-GDAKGNTPLHVLAAIR---PNEFDVDLVR  149 (355)
Q Consensus        76 Ll~~~~~~~~~~d~~g~t~Lh~A~~~--~~~~~~~~Ll~~~~~~~~~~n~-~d~~G~T~Lh~A~~~~---~~~~~~~lL~  149 (355)
                      |++.|+++.+.+|..|+||||+|+..  ++.++++.|++    .|++++. .|..|.||||.|++.+   .+.+++++|+
T Consensus       130 Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~----~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll  205 (494)
T PHA02989        130 LLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLS----FGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLI  205 (494)
T ss_pred             HHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHH----cCCCccccccccCCChHHHHHhcccccccHHHHHHHH
Confidence            77766666445566677777766543  45666666666    5566665 4566666666665543   1245556665


Q ss_pred             ccCcccc
Q 042924          150 KTQANYD  156 (355)
Q Consensus       150 ~~ga~~~  156 (355)
                      +.|++++
T Consensus       206 ~~Ga~vn  212 (494)
T PHA02989        206 KKGVNIE  212 (494)
T ss_pred             hCCCCcc
Confidence            5555443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=6.8e-24  Score=190.55  Aligned_cols=163  Identities=25%  Similarity=0.231  Sum_probs=144.2

Q ss_pred             hHHHHHHHhccccccc--------cCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHH
Q 042924            2 AALSKLLEIKKNLIKE--------TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIV   73 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~--------~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v   73 (355)
                      +.|+.+|++.++.+.+        ..-+|-+||..|+..||.++|+.|+++++++ |.... ...|||-.||.-|+.+++
T Consensus        56 ~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~-TNStPLraACfDG~leiv  133 (615)
T KOG0508|consen   56 DVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTR-TNSTPLRAACFDGHLEIV  133 (615)
T ss_pred             HHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccc-cCCccHHHHHhcchhHHH
Confidence            4677788876655433        2357899999999999999999999999877 55554 677999999999999999


Q ss_pred             HHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCc
Q 042924           74 EAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQA  153 (355)
Q Consensus        74 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga  153 (355)
                      ++|+++++|+ +..|+.|.|.||+|+..|+.+++++|++    .|+++|.++..|||+||.++..|+ .+++++|+++|+
T Consensus       134 KyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle----~gADvn~ks~kGNTALH~caEsG~-vdivq~Ll~~ga  207 (615)
T KOG0508|consen  134 KYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLE----QGADVNAKSYKGNTALHDCAESGS-VDIVQLLLKHGA  207 (615)
T ss_pred             HHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHH----hCCCcchhcccCchHHHhhhhccc-HHHHHHHHhCCc
Confidence            9999999999 9999999999999999999999999999    889999999999999999999996 999999999999


Q ss_pred             ccccccCCCCcHHHHHhhCC
Q 042924          154 NYDAVNKQIVSVRHIFNYGY  173 (355)
Q Consensus       154 ~~~~~n~~g~Tpl~~a~~~~  173 (355)
                      .++ +|..|.|||-.|....
T Consensus       208 ~i~-~d~~GmtPL~~Aa~tG  226 (615)
T KOG0508|consen  208 KID-VDGHGMTPLLLAAVTG  226 (615)
T ss_pred             eee-ecCCCCchHHHHhhhc
Confidence            876 4556999999998443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=6.4e-23  Score=209.55  Aligned_cols=157  Identities=24%  Similarity=0.194  Sum_probs=142.7

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE   82 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   82 (355)
                      .++.++ +.+.++|.+|.+|+||||+||..|+.++++.|+++|+++ +.+|. +|+||||.|+..|+.++++.|++.+..
T Consensus       540 ~l~~Ll-~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~-~G~TpL~~A~~~g~~~iv~~L~~~~~~  616 (823)
T PLN03192        540 LLEELL-KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDA-NGNTALWNAISAKHHKIFRILYHFASI  616 (823)
T ss_pred             HHHHHH-HCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCC-CCCCHHHHHHHhCCHHHHHHHHhcCcc
Confidence            445544 567778999999999999999999999999999999987 88887 999999999999999999999987665


Q ss_pred             cccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCC
Q 042924           83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQI  162 (355)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g  162 (355)
                      . +  +..|.++||.|+.+|+.++++.|++    .|+++|.+|.+|+||||+|+..|+ .+++++|+++|+|++..|.+|
T Consensus       617 ~-~--~~~~~~~L~~Aa~~g~~~~v~~Ll~----~Gadin~~d~~G~TpLh~A~~~g~-~~iv~~Ll~~GAdv~~~~~~g  688 (823)
T PLN03192        617 S-D--PHAAGDLLCTAAKRNDLTAMKELLK----QGLNVDSEDHQGATALQVAMAEDH-VDMVRLLIMNGADVDKANTDD  688 (823)
T ss_pred             c-C--cccCchHHHHHHHhCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHCCc-HHHHHHHHHcCCCCCCCCCCC
Confidence            4 2  4567899999999999999999999    789999999999999999999996 999999999999999999998


Q ss_pred             -CcHHHHHh
Q 042924          163 -VSVRHIFN  170 (355)
Q Consensus       163 -~Tpl~~a~  170 (355)
                       .||.+++.
T Consensus       689 ~~t~~~l~~  697 (823)
T PLN03192        689 DFSPTELRE  697 (823)
T ss_pred             CCCHHHHHH
Confidence             89998876

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=2.5e-23  Score=172.16  Aligned_cols=147  Identities=15%  Similarity=0.098  Sum_probs=128.0

Q ss_pred             ccccccccCCCCChHHHHHHHcCCH----HHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHH---HHHHhhhCCcc
Q 042924           11 KKNLIKETDQYGWTPIHYAAYYGNY----GTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARI---VEAIISKNPEC   83 (355)
Q Consensus        11 ~~~~~~~~d~~G~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~---v~~Ll~~~~~~   83 (355)
                      ++.++++.+.++.++||.||+.|+.    ++++.|++.+... +.++. .|+||||+|+..|+.+.   +++|++.++++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~-~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDH-HGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCC-CCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            3456777889999999999999998    5666777777765 77777 99999999999988654   89999999988


Q ss_pred             ccccc-cCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCC
Q 042924           84 YELVD-NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQI  162 (355)
Q Consensus        84 ~~~~d-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g  162 (355)
                       +.+| ..|+||||+|+..++.+++++|+..   .+.+++.+|.+|+||||+|+..++ .+++++|+++|++++.++..|
T Consensus        87 -n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~---~gad~~~~d~~g~tpL~~A~~~~~-~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         87 -NARELGTGNTLLHIAASTKNYELAEWLCRQ---LGVNLGAINYQHETAYHIAYKMRD-RRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             -CCCCCCCCCcHHHHHHHhCCHHHHHHHHhc---cCCCccCcCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCCcccCC
Confidence             7777 5899999999999999999999952   578899999999999999999995 889999999999999999887


Q ss_pred             Cc
Q 042924          163 VS  164 (355)
Q Consensus       163 ~T  164 (355)
                      ..
T Consensus       162 ~~  163 (166)
T PHA02743        162 LS  163 (166)
T ss_pred             cc
Confidence            53

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=1.7e-22  Score=167.94  Aligned_cols=135  Identities=19%  Similarity=0.195  Sum_probs=112.7

Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHHhhcc------CCCcccccccCCCchHHHHHHhcCC----HHHHHHHhhhCCcc
Q 042924           14 LIKETDQYGWTPIHYAAYYGNYGTVNLLLET------DQSASNIADKDRKMTALHLAAGKGD----ARIVEAIISKNPEC   83 (355)
Q Consensus        14 ~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~------~~~~~~~~~~~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~   83 (355)
                      +++.+|.+|.||||+|++.|+.++++.|+..      +++. +.++. .|.||||+|+..|+    .++++.|++.++++
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~-~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi   90 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDD-AGQMCIHIAAEKHEAQLAAEIIDHLIELGADI   90 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCC-CCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC
Confidence            4678889999999999999999999988542      3444 67776 89999999999998    58889999999888


Q ss_pred             cccccc-CCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCccc
Q 042924           84 YELVDN-RGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANY  155 (355)
Q Consensus        84 ~~~~d~-~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~  155 (355)
                       +.+|. +|+||||+|+..++.++++.|+..   .+.+++.+|.+|+||||+|+..++ .+++++|.+.++..
T Consensus        91 -n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~---~g~~~~~~n~~g~tpL~~A~~~~~-~~iv~~L~~~~~~~  158 (169)
T PHA02741         91 -NAQEMLEGDTALHLAAHRRDHDLAEWLCCQ---PGIDLHFCNADNKSPFELAIDNED-VAMMQILREIVATS  158 (169)
T ss_pred             -CCCCcCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCcCCCCCCCHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence             66774 899999999999999999999863   357888899999999999999985 78888888776553

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=7.6e-23  Score=178.45  Aligned_cols=152  Identities=22%  Similarity=0.236  Sum_probs=136.2

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHh-----cCCHHHHHHHhhhCCcccccccc
Q 042924           15 IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAG-----KGDARIVEAIISKNPECYELVDN   89 (355)
Q Consensus        15 ~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~-----~g~~~~v~~Ll~~~~~~~~~~d~   89 (355)
                      +|..|.+|.|+||||+.++|.++|+.||+.|...++..++ -|+||+++|+.     ..+.++|..|.+.| +++-....
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNr-AGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNR-AGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCccccccccc-ccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh
Confidence            6889999999999999999999999999999887788887 99999999884     35788999998765 44345567


Q ss_pred             CCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHh-ccCcccccccCCCCcHHHH
Q 042924           90 RGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVR-KTQANYDAVNKQIVSVRHI  168 (355)
Q Consensus        90 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~-~~ga~~~~~n~~g~Tpl~~  168 (355)
                      .|+|+|++|+.+|+.++++.||.    .|+++|.+|.+|-|+|+.||.+|| .+++++|+ ..++|....|.+|-|+|.+
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLa----cgAdVNiQDdDGSTALMCA~EHGh-kEivklLLA~p~cd~sLtD~DgSTAl~I  413 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLA----CGADVNIQDDDGSTALMCAAEHGH-KEIVKLLLAVPSCDISLTDVDGSTALSI  413 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHH----ccCCCccccCCccHHHhhhhhhCh-HHHHHHHhccCcccceeecCCCchhhhh
Confidence            89999999999999999999999    889999999999999999999997 88887776 6689999999999999999


Q ss_pred             HhhCC
Q 042924          169 FNYGY  173 (355)
Q Consensus       169 a~~~~  173 (355)
                      |.+..
T Consensus       414 Aleag  418 (452)
T KOG0514|consen  414 ALEAG  418 (452)
T ss_pred             HHhcC
Confidence            99665

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.88  E-value=4.8e-23  Score=168.10  Aligned_cols=162  Identities=17%  Similarity=0.131  Sum_probs=138.4

Q ss_pred             ccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccC
Q 042924           11 KKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNR   90 (355)
Q Consensus        11 ~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   90 (355)
                      ++.-.|+.+-.+++|+.+++.+.+.+.+..+.+..   .|..|+ .|.|||.+|+.+|+.++|++|++.|+++ ......
T Consensus       118 N~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De-~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~  192 (296)
T KOG0502|consen  118 NGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDE-FGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKY  192 (296)
T ss_pred             ccccCCccccccCChhhHHHHHHHHHHHHHHhhcc---ccCccc-cCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhh
Confidence            44556888889999999999999888877776543   377787 9999999999999999999999999998 778888


Q ss_pred             CchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHh
Q 042924           91 GWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFN  170 (355)
Q Consensus        91 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~  170 (355)
                      ..++|.+|++.|..+++++|+.    ++.++|..|-+|-|||-+|++.+| .+|++.|+..|+|++..+..|+++++.|.
T Consensus       193 resALsLAt~ggytdiV~lLL~----r~vdVNvyDwNGgTpLlyAvrgnh-vkcve~Ll~sGAd~t~e~dsGy~~mdlAV  267 (296)
T KOG0502|consen  193 RESALSLATRGGYTDIVELLLT----REVDVNVYDWNGGTPLLYAVRGNH-VKCVESLLNSGADVTQEDDSGYWIMDLAV  267 (296)
T ss_pred             hhhhHhHHhcCChHHHHHHHHh----cCCCcceeccCCCceeeeeecCCh-HHHHHHHHhcCCCcccccccCCcHHHHHH
Confidence            8999999999999999999999    778999999999999999999886 89999999999999999999999999998


Q ss_pred             hCCCchHHHHHH
Q 042924          171 YGYPELKEEIQK  182 (355)
Q Consensus       171 ~~~~~~~~~i~~  182 (355)
                      .......+.+++
T Consensus       268 alGyr~Vqqvie  279 (296)
T KOG0502|consen  268 ALGYRIVQQVIE  279 (296)
T ss_pred             HhhhHHHHHHHH
Confidence            443333444444

>PHA02917 ankyrin-like protein; Provisional

Probab=99.88  E-value=1.1e-21  Score=194.10  Aligned_cols=179  Identities=15%  Similarity=0.087  Sum_probs=143.2

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcC-----------------------------------CHHHHHHhhccCCCc
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYG-----------------------------------NYGTVNLLLETDQSA   48 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g-----------------------------------~~~~v~~Ll~~~~~~   48 (355)
                      +.++|...+++++.+|..|+||||+|+..|                                   +.+++++|+++|+++
T Consensus        50 ~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadi  129 (661)
T PHA02917         50 VVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDL  129 (661)
T ss_pred             HHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCC
Confidence            444555677888999999999999888755                                   346677778888887


Q ss_pred             ccccccCCCchHHHHHH--hcCCHHHHHHHhhhCCcccccccc---CC-----------chHHHHHHh-----------c
Q 042924           49 SNIADKDRKMTALHLAA--GKGDARIVEAIISKNPECYELVDN---RG-----------WNFLHYAVV-----------S  101 (355)
Q Consensus        49 ~~~~~~~~g~tpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~---~g-----------~t~Lh~A~~-----------~  101 (355)
                       +.++. .|+||||.|+  ..|+.+++++|++.|+++ +..|.   .|           .||||+|+.           +
T Consensus       130 -n~~d~-~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~  206 (661)
T PHA02917        130 -SVKCE-NHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAY  206 (661)
T ss_pred             -CccCC-CCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccHHHHHHhhccccccccccc
Confidence             77887 9999999654  578999999999999988 43332   33           599999986           4


Q ss_pred             CChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCc-hHHHHHHhccCcccc----cccCCCCcHHHHHhh-----
Q 042924          102 FRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPN-EFDVDLVRKTQANYD----AVNKQIVSVRHIFNY-----  171 (355)
Q Consensus       102 ~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~-~~~~~lL~~~ga~~~----~~n~~g~Tpl~~a~~-----  171 (355)
                      ++.+++++|++    .|+++|.+|.+|+||||+|+..|+. .+++++|++ |++.+    ..|..|.||++++.+     
T Consensus       207 ~~~eiv~~Li~----~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~  281 (661)
T PHA02917        207 VRPEVVKCLIN----HGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDY  281 (661)
T ss_pred             CcHHHHHHHHH----CCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhc
Confidence            68899999999    7899999999999999999999964 368899875 88875    456678888888873     


Q ss_pred             -CCCchHHHHHHHHHHcCCC
Q 042924          172 -GYPELKEEIQKLSKDVGRG  190 (355)
Q Consensus       172 -~~~~~~~~i~~~l~~~~~~  190 (355)
                       ....+..+++++|.+.|+.
T Consensus       282 ~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        282 RYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             cccccchHHHHHHHHhCCCC
Confidence             2224467899999998864

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.88  E-value=2.3e-22  Score=202.06  Aligned_cols=176  Identities=29%  Similarity=0.313  Sum_probs=156.2

Q ss_pred             HHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccc
Q 042924            5 SKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECY   84 (355)
Q Consensus         5 ~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   84 (355)
                      ..++.+.+..+|..-++|.||||.|+..||.++++.|++.++.. +...+ .|.+++|.|...+...+++.+++.+.++ 
T Consensus       457 ~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~-~~l~~lhla~~~~~v~~~~~l~~~ga~v-  533 (1143)
T KOG4177|consen  457 ARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAK-KGLTPLHLAADEDTVKVAKILLEHGANV-  533 (1143)
T ss_pred             hhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCcc-Cccch-hccchhhhhhhhhhHHHHHHHhhcCCce-
Confidence            34566677888999999999999999999999999999987555 55555 8899999999999999999999999988 


Q ss_pred             cccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCc
Q 042924           85 ELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVS  164 (355)
Q Consensus        85 ~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~T  164 (355)
                      +.++..|.||||.|+.+|+.++|++|++    +|++++.+|+.|+||||.||..|+ .+++.+|+++|+++|..|.+|.|
T Consensus       534 ~~~~~r~~TpLh~A~~~g~v~~VkfLLe----~gAdv~ak~~~G~TPLH~Aa~~G~-~~i~~LLlk~GA~vna~d~~g~T  608 (1143)
T KOG4177|consen  534 DLRTGRGYTPLHVAVHYGNVDLVKFLLE----HGADVNAKDKLGYTPLHQAAQQGH-NDIAELLLKHGASVNAADLDGFT  608 (1143)
T ss_pred             ehhcccccchHHHHHhcCCchHHHHhhh----CCccccccCCCCCChhhHHHHcCh-HHHHHHHHHcCCCCCcccccCcc
Confidence            8889999999999999999999999999    889999999999999999999996 89999999999999999999999


Q ss_pred             HHHHHhhCCCchHHHHHHHHHHcCCCC
Q 042924          165 VRHIFNYGYPELKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       165 pl~~a~~~~~~~~~~i~~~l~~~~~~~  191 (355)
                      ||++|....   ...+.+.++..+..+
T Consensus       609 pL~iA~~lg---~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  609 PLHIAVRLG---YLSVVKLLKVVTATP  632 (1143)
T ss_pred             hhHHHHHhc---ccchhhHHHhccCcc
Confidence            999999655   456677777766664

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=5.2e-22  Score=156.33  Aligned_cols=142  Identities=25%  Similarity=0.231  Sum_probs=131.2

Q ss_pred             HHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCCh
Q 042924           25 PIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRV  104 (355)
Q Consensus        25 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  104 (355)
                      -+.+|+..+....|+.||+..++.+|.+|. +|.||||.|+.+|+.++++.|+..+++. +.+...|+||||.||.-++.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~-D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDE-DEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccccccccc-ccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccch
Confidence            367899999999999999999999999998 9999999999999999999999999999 88999999999999999999


Q ss_pred             hHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHH-HhccCcccccccCCCCcHHHHHhhC
Q 042924          105 EKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDL-VRKTQANYDAVNKQIVSVRHIFNYG  172 (355)
Q Consensus       105 ~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~l-L~~~ga~~~~~n~~g~Tpl~~a~~~  172 (355)
                      +++..|++    .|+++|++.....||||+||...+....+.+ |..+++++..+|+.+.||+++|.+.
T Consensus       144 ~va~~LLq----hgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  144 EVAGRLLQ----HGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             hHHHHHHh----ccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            99999999    8899999999999999999998865666655 4577899999999999999999854

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=5.1e-22  Score=162.60  Aligned_cols=136  Identities=17%  Similarity=0.123  Sum_probs=111.1

Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHhhccCC------CcccccccCCCchHHHHHHhcCCH---HHHHHHhhhCCcc
Q 042924           13 NLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQ------SASNIADKDRKMTALHLAAGKGDA---RIVEAIISKNPEC   83 (355)
Q Consensus        13 ~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~------~~~~~~~~~~g~tpLh~Aa~~g~~---~~v~~Ll~~~~~~   83 (355)
                      ...+.+|.+|.||||+||+.|+.  +.++...+.      .....++. .|.||||+|+..|+.   ++++.|++.++++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~-~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi   84 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNR-HGKQCVHIVSNPDKADPQEKLKLLMEWGADI   84 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcC-CCCEEEEeecccCchhHHHHHHHHHHcCCCc
Confidence            34678899999999999999984  333322211      11234565 899999999999987   4688999999988


Q ss_pred             ccccc-cCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccc
Q 042924           84 YELVD-NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYD  156 (355)
Q Consensus        84 ~~~~d-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~  156 (355)
                       +.+| ..|+||||+|+..++.++++.|+..   .+.+++.+|..|+||||+|+..++ .+++++|++.|++.+
T Consensus        85 -n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~---~g~d~n~~~~~g~tpL~~A~~~~~-~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         85 -NGKERVFGNTPLHIAVYTQNYELATWLCNQ---PGVNMEILNYAFKTPYYVACERHD-AKMMNILRAKGAQCK  153 (154)
T ss_pred             -cccCCCCCCcHHHHHHHhCCHHHHHHHHhC---CCCCCccccCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCC
Confidence             6777 5899999999999999999999973   367899999999999999999995 889999999998865

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.87  E-value=2.9e-22  Score=163.56  Aligned_cols=145  Identities=24%  Similarity=0.305  Sum_probs=96.0

Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCc
Q 042924           13 NLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGW   92 (355)
Q Consensus        13 ~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~   92 (355)
                      +.+|..|+.|.|||.+|+..|+.++|++||+.|+++ ..-.+ ...++|.+|++.|..++|++|+.+++++ +..|.+|-
T Consensus       151 n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk-~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGg  227 (296)
T KOG0502|consen  151 NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGK-YRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGG  227 (296)
T ss_pred             ccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhh-hhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCC
Confidence            446666777777777777777777777777777666 44444 5566777777777777777777777666 66677777


Q ss_pred             hHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHH
Q 042924           93 NFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVR  166 (355)
Q Consensus        93 t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl  166 (355)
                      |||.+|++.++.+|++.|++    .|++++..|..|++++.+|+..|  ...++..+++-++.+.+|+.-+||+
T Consensus       228 TpLlyAvrgnhvkcve~Ll~----sGAd~t~e~dsGy~~mdlAValG--yr~Vqqvie~h~lkl~Q~~~~~~~~  295 (296)
T KOG0502|consen  228 TPLLYAVRGNHVKCVESLLN----SGADVTQEDDSGYWIMDLAVALG--YRIVQQVIEKHALKLCQDSEKRTPL  295 (296)
T ss_pred             ceeeeeecCChHHHHHHHHh----cCCCcccccccCCcHHHHHHHhh--hHHHHHHHHHHHHHHhhcccCCCCC
Confidence            77777777777777777776    66677777777777777777766  2355555555566666665555554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.86  E-value=2.4e-22  Score=170.41  Aligned_cols=154  Identities=21%  Similarity=0.232  Sum_probs=132.4

Q ss_pred             HHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHH
Q 042924           29 AAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLT  108 (355)
Q Consensus        29 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~  108 (355)
                      -|+.|+.--|++-|+......|..|+ .|.+|||+||+.|+..+++.|+..|+.+ +..+.-..||||+|+.+|+.++++
T Consensus         7 wcregna~qvrlwld~tehdln~gdd-hgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLDDTEHDLNVGDD-HGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhhcCCeEEEEEEecCcccccccccc-cCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHH
Confidence            46777766677777755555588887 9999999999999999999999999988 778888899999999999999999


Q ss_pred             HHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcC
Q 042924          109 NLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVG  188 (355)
Q Consensus       109 ~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~  188 (355)
                      .|++    .++++|+.+..||||||+||..| ...+.+=|+..|+.++..|++|.||++.|...-   ++.+++.-++.|
T Consensus        85 kll~----~kadvnavnehgntplhyacfwg-ydqiaedli~~ga~v~icnk~g~tpldkakp~l---~~~l~e~aek~g  156 (448)
T KOG0195|consen   85 KLLS----RKADVNAVNEHGNTPLHYACFWG-YDQIAEDLISCGAAVNICNKKGMTPLDKAKPML---KNTLLEIAEKHG  156 (448)
T ss_pred             HHHH----HhcccchhhccCCCchhhhhhhc-HHHHHHHHHhccceeeecccCCCCchhhhchHH---HHHHHHHHHHhC
Confidence            9999    78999999999999999999999 488889999999999999999999999987433   556666666666


Q ss_pred             CCCC
Q 042924          189 RGQY  192 (355)
Q Consensus       189 ~~~~  192 (355)
                      ..+.
T Consensus       157 q~~n  160 (448)
T KOG0195|consen  157 QSPN  160 (448)
T ss_pred             CCCC
Confidence            6554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=4.7e-22  Score=178.77  Aligned_cols=158  Identities=18%  Similarity=0.107  Sum_probs=138.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHhhccC-CCccccccc-------CCCchHHHHHHhcCCHHHHHHHhhhCCccccccccC
Q 042924           19 DQYGWTPIHYAAYYGNYGTVNLLLETD-QSASNIADK-------DRKMTALHLAAGKGDARIVEAIISKNPECYELVDNR   90 (355)
Q Consensus        19 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~-~~~~~~~~~-------~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   90 (355)
                      +.+|.|||-.||++||.++|++|+++. +++ .....       -+|-+||-.|+..||.++|+.|++.++++ |.....
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~-e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~T  116 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASP-EQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRT  116 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCc-cCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-cccccc
Confidence            467889999999999999999999943 322 22111       36889999999999999999999999888 777778


Q ss_pred             CchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHh
Q 042924           91 GWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFN  170 (355)
Q Consensus        91 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~  170 (355)
                      ..|||--||.-|+.+++++|++    .|++++..|+.|+|.||+||..|| .+++++|++.|+|+|.++.+|.|+||.+.
T Consensus       117 NStPLraACfDG~leivKyLvE----~gad~~IanrhGhTcLmIa~ykGh-~~I~qyLle~gADvn~ks~kGNTALH~ca  191 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVE----HGADPEIANRHGHTCLMIACYKGH-VDIAQYLLEQGADVNAKSYKGNTALHDCA  191 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHH----cCCCCcccccCCCeeEEeeeccCc-hHHHHHHHHhCCCcchhcccCchHHHhhh
Confidence            8899999999999999999999    889999999999999999999996 99999999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHH
Q 042924          171 YGYPELKEEIQKLSKD  186 (355)
Q Consensus       171 ~~~~~~~~~i~~~l~~  186 (355)
                      +.+   .-+|+++|..
T Consensus       192 EsG---~vdivq~Ll~  204 (615)
T KOG0508|consen  192 ESG---SVDIVQLLLK  204 (615)
T ss_pred             hcc---cHHHHHHHHh
Confidence            665   4466666665

>PHA02795 ankyrin-like protein; Provisional

Probab=99.86  E-value=3.3e-21  Score=178.55  Aligned_cols=151  Identities=14%  Similarity=0.080  Sum_probs=130.9

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCccccccc----CCCchHHHHHHhcCCHHHHHHHhh
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADK----DRKMTALHLAAGKGDARIVEAIIS   78 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~----~~g~tpLh~Aa~~g~~~~v~~Ll~   78 (355)
                      .+.++|..+|++++..  ++.||||.|+..|+.+++++|+++|++..+..+.    ..|.+|+|.|+..++.++++.|++
T Consensus       132 eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs  209 (437)
T PHA02795        132 DIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP  209 (437)
T ss_pred             HHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh
Confidence            3456667788888874  5589999999999999999999999754333211    147899999999999999999999


Q ss_pred             hCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCC-------chHHHHHHhcc
Q 042924           79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRP-------NEFDVDLVRKT  151 (355)
Q Consensus        79 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~-------~~~~~~lL~~~  151 (355)
                      .|+++ +.+|..|+||||+|+.+|+.++++.|++    .|+++|.+|.+|+||||+|+..|+       +.+++++|+++
T Consensus       210 ~GADI-N~kD~~G~TpLh~Aa~~g~~eiVelLL~----~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~  284 (437)
T PHA02795        210 YIEDI-NQLDAGGRTLLYRAIYAGYIDLVSWLLE----NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLRE  284 (437)
T ss_pred             CcCCc-CcCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhC
Confidence            99998 8899999999999999999999999999    889999999999999999999884       25889999999


Q ss_pred             CcccccccC
Q 042924          152 QANYDAVNK  160 (355)
Q Consensus       152 ga~~~~~n~  160 (355)
                      |++++....
T Consensus       285 gadI~~~~~  293 (437)
T PHA02795        285 PLSIDCIKL  293 (437)
T ss_pred             CCCCCchhH
Confidence            999876543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.2e-20  Score=168.32  Aligned_cols=155  Identities=14%  Similarity=0.107  Sum_probs=125.4

Q ss_pred             ccccCCCCChH-HHHHHHcCCHHHHHHhhccCCCcccccc---cCCCchHHHHHHhcCCHHHHHHHhhhCCcccccc-cc
Q 042924           15 IKETDQYGWTP-IHYAAYYGNYGTVNLLLETDQSASNIAD---KDRKMTALHLAAGKGDARIVEAIISKNPECYELV-DN   89 (355)
Q Consensus        15 ~~~~d~~G~tp-Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~---~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~   89 (355)
                      +..+|+.|+|| ||.|++.|+.++++.|+++|+++ +.++   ...|.||||+|+..|+.+++++|++.|+++ +.+ +.
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEE  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCC
Confidence            57788888865 56666779999999999999988 6653   138999999999999999999999999999 664 56


Q ss_pred             CCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHH
Q 042924           90 RGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIF  169 (355)
Q Consensus        90 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a  169 (355)
                      .|.||||+|+..++.++++.|+.    .|++++.+|.+|.||||+|+..++ ..++.++.  |..   .+..+.+|.++.
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~----~GAdin~kd~~G~TpL~~A~~~~~-~~~~~~~~--~~~---~~~~~~~~~~~~  172 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLS----YGADINIQTNDMVTPIELALMICN-NFLAFMIC--DNE---ISNFYKHPKKIL  172 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHhCC-hhHHHHhc--CCc---ccccccChhhhh
Confidence            89999999999999999999999    789999999999999999999885 55555544  322   466777888865


Q ss_pred             hhCCCchHHHHHHHHHHc
Q 042924          170 NYGYPELKEEIQKLSKDV  187 (355)
Q Consensus       170 ~~~~~~~~~~i~~~l~~~  187 (355)
                      .      ..++.++|..+
T Consensus       173 ~------n~ei~~~Lish  184 (300)
T PHA02884        173 I------NFDILKILVSH  184 (300)
T ss_pred             c------cHHHHHHHHHH
Confidence            3      23455555553

>PHA02730 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.9e-20  Score=181.42  Aligned_cols=181  Identities=16%  Similarity=0.101  Sum_probs=134.2

Q ss_pred             HHHHHHHhccccccccCCCCChHHHH--HHHcCCHHHHHHhhc--------------------------------cCCCc
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHY--AAYYGNYGTVNLLLE--------------------------------TDQSA   48 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~--Aa~~g~~~~v~~Ll~--------------------------------~~~~~   48 (355)
                      .+.++|..+|+++|.+|.+|+||||+  |+..|+.|++++|++                                +|.+.
T Consensus       216 eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  295 (672)
T PHA02730        216 DVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM  295 (672)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch
Confidence            46678888899999999999999995  666788999999999                                45554


Q ss_pred             ccc--------------------cccCCCch---------------------HHHHHHhcC---CHHHHHHHhhhCCccc
Q 042924           49 SNI--------------------ADKDRKMT---------------------ALHLAAGKG---DARIVEAIISKNPECY   84 (355)
Q Consensus        49 ~~~--------------------~~~~~g~t---------------------pLh~Aa~~g---~~~~v~~Ll~~~~~~~   84 (355)
                       ..                    .+. .|.+                     .||.=...+   +.++++.|+++|+++ 
T Consensus       296 -~i~~~~~~~~~~~~~~~~~~~~~~~-~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI-  372 (672)
T PHA02730        296 -EIVNLLIEGRHTLIDVMRSITSYDS-REYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATM-  372 (672)
T ss_pred             -HHHHHHhhccCcchhhhhccccccc-cccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC-
Confidence             23                    222 3433                     455555544   688899999998888 


Q ss_pred             cccccCCchHHHHHHhcCC----hhHHHHHHhcChhhhh--hhccCCCCCCcHHHH---HHhcCC--------chHHHHH
Q 042924           85 ELVDNRGWNFLHYAVVSFR----VEKLTNLLENNPLARS--LINEGDAKGNTPLHV---LAAIRP--------NEFDVDL  147 (355)
Q Consensus        85 ~~~d~~g~t~Lh~A~~~~~----~~~~~~Ll~~~~~~~~--~~n~~d~~G~T~Lh~---A~~~~~--------~~~~~~l  147 (355)
                      +. +..|+||||+|+.++.    .++++.|++    .|+  ++|.+|.+|.||||.   |...+.        ...++++
T Consensus       373 N~-k~~G~TpLH~Aa~~nnn~i~~eIvelLIs----~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~  447 (672)
T PHA02730        373 DK-TTDNNYPLHDYFVNNNNIVDVNVVRFIVE----NNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDI  447 (672)
T ss_pred             Cc-CCCCCcHHHHHHHHcCCcchHHHHHHHHH----cCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHH
Confidence            44 3688899998887764    788888888    444  588888889998883   332221        1135788


Q ss_pred             HhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCCC
Q 042924          148 VRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYSD  194 (355)
Q Consensus       148 L~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~~  194 (355)
                      |+.+|+|+|.+|..|+|||++|+...   ..++.++|.+.|++....
T Consensus       448 LIs~GADINakD~~G~TPLh~Aa~~~---~~eive~LI~~GAdIN~~  491 (672)
T PHA02730        448 LSKYMDDIDMIDNENKTLLYYAVDVN---NIQFARRLLEYGASVNTT  491 (672)
T ss_pred             HHhcccchhccCCCCCCHHHHHHHhC---CHHHHHHHHHCCCCCCCC
Confidence            88889999999999999999888654   457788888887766543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.85  E-value=2.7e-19  Score=181.76  Aligned_cols=160  Identities=21%  Similarity=0.177  Sum_probs=127.9

Q ss_pred             hHHHHHHHh-ccccccccCCCCChHHH-HHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhc---CCHHHHHHH
Q 042924            2 AALSKLLEI-KKNLIKETDQYGWTPIH-YAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGK---GDARIVEAI   76 (355)
Q Consensus         2 ~~v~~lL~~-~~~~~~~~d~~G~tpLh-~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~---g~~~~v~~L   76 (355)
                      +.++++++. .+.++|..|..|+|||| .|+..++.++++.|++.+.     .+. .|.||||.|+..   +..++++.+
T Consensus        31 ~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~-~G~T~Lh~A~~~~~~~v~~ll~~l  104 (743)
T TIGR00870        31 ASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGA-VGDTLLHAISLEYVDAVEAILLHL  104 (743)
T ss_pred             HHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCC-cChHHHHHHHhccHHHHHHHHHHH
Confidence            456677765 25678999999999999 8888899999999999876     444 899999999873   223344444


Q ss_pred             hhhCCcc---------ccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCC--------------CCCCcHHH
Q 042924           77 ISKNPEC---------YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGD--------------AKGNTPLH  133 (355)
Q Consensus        77 l~~~~~~---------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d--------------~~G~T~Lh  133 (355)
                      .+.+++.         ....+..|.||||+|+.+|+.++++.|++    .|+++|.++              ..|+||||
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~----~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~  180 (743)
T TIGR00870       105 LAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLE----RGASVPARACGDFFVKSQGVDSFYHGESPLN  180 (743)
T ss_pred             hhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHh----CCCCCCcCcCCchhhcCCCCCcccccccHHH
Confidence            4444321         11123569999999999999999999999    677777653              35999999


Q ss_pred             HHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhC
Q 042924          134 VLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYG  172 (355)
Q Consensus       134 ~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~  172 (355)
                      .|+..++ .+++++|++.|+|++.+|..|+||+|+|...
T Consensus       181 ~Aa~~~~-~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       181 AAACLGS-PSIVALLSEDPADILTADSLGNTLLHLLVME  218 (743)
T ss_pred             HHHHhCC-HHHHHHHhcCCcchhhHhhhhhHHHHHHHhh
Confidence            9999995 9999999999999999999999999999854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=2.5e-21  Score=177.20  Aligned_cols=162  Identities=28%  Similarity=0.259  Sum_probs=144.2

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.+..+|..+ ...+..|.+|.|+||-+|...+.+||++|+++|+++ +..|. +|+||||.|+..|+..++++|++.++
T Consensus        54 ~ev~~ll~~g-a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~-e~wtPlhaaascg~~~i~~~li~~gA  130 (527)
T KOG0505|consen   54 EEVRKLLNRG-ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDN-EGWTPLHAAASCGYLNIVEYLIQHGA  130 (527)
T ss_pred             HHHHHHhccC-CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-ccccc-ccCCcchhhcccccHHHHHHHHHhhh
Confidence            3466666655 456999999999999999999999999999999998 88888 99999999999999999999998766


Q ss_pred             cccc----------------------------------------------------------ccccCCchHHHHHHhcCC
Q 042924           82 ECYE----------------------------------------------------------LVDNRGWNFLHYAVVSFR  103 (355)
Q Consensus        82 ~~~~----------------------------------------------------------~~d~~g~t~Lh~A~~~~~  103 (355)
                      +...                                                          ..+..|.|.||+|+.+|.
T Consensus       131 ~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy  210 (527)
T KOG0505|consen  131 NLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGY  210 (527)
T ss_pred             hhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhH
Confidence            5311                                                          133458999999999999


Q ss_pred             hhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhh
Q 042924          104 VEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNY  171 (355)
Q Consensus       104 ~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~  171 (355)
                      .++.++|++    .|..++.+|.+|+||||.|+..|+ ...+++|.++|++++.++..|+||++++..
T Consensus       211 ~e~~~lLl~----ag~~~~~~D~dgWtPlHAAA~Wg~-~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  211 TEVAALLLQ----AGYSVNIKDYDGWTPLHAAAHWGQ-EDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHHHHHH----hccCcccccccCCCcccHHHHhhh-HhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            999999999    889999999999999999999996 888899999999999999999999999984

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=1.8e-20  Score=155.75  Aligned_cols=128  Identities=17%  Similarity=0.141  Sum_probs=108.5

Q ss_pred             ccccCCCchHHHHHHhcCCHHHHHHHhhh------CCccccccccCCchHHHHHHhcCC----hhHHHHHHhcChhhhhh
Q 042924           51 IADKDRKMTALHLAAGKGDARIVEAIISK------NPECYELVDNRGWNFLHYAVVSFR----VEKLTNLLENNPLARSL  120 (355)
Q Consensus        51 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~------~~~~~~~~d~~g~t~Lh~A~~~~~----~~~~~~Ll~~~~~~~~~  120 (355)
                      .++. .|.||||+|++.|+.++++.|+..      +.++ +.+|..|+||||+|+..++    .++++.|++    .|++
T Consensus        16 ~~~~-~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~----~gad   89 (169)
T PHA02741         16 EKNS-EGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE----LGAD   89 (169)
T ss_pred             cccc-CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHH----cCCC
Confidence            3455 899999999999999999998653      3444 7889999999999999998    467777877    7889


Q ss_pred             hccCCC-CCCcHHHHHHhcCCchHHHHHHhc-cCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcC
Q 042924          121 INEGDA-KGNTPLHVLAAIRPNEFDVDLVRK-TQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVG  188 (355)
Q Consensus       121 ~n~~d~-~G~T~Lh~A~~~~~~~~~~~lL~~-~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~  188 (355)
                      +|.+|. +|+||||+|+..++ .+++++|++ .|++++.+|.+|+||+++|....   ..++.++|.+.+
T Consensus        90 in~~~~~~g~TpLh~A~~~~~-~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~---~~~iv~~L~~~~  155 (169)
T PHA02741         90 INAQEMLEGDTALHLAAHRRD-HDLAEWLCCQPGIDLHFCNADNKSPFELAIDNE---DVAMMQILREIV  155 (169)
T ss_pred             CCCCCcCCCCCHHHHHHHcCC-HHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCC---CHHHHHHHHHHH
Confidence            999985 99999999999996 888999886 69999999999999999999765   446677776643

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.83  E-value=5.5e-21  Score=192.16  Aligned_cols=185  Identities=26%  Similarity=0.267  Sum_probs=147.1

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcC-CHHHHHHHhhhCCc
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKG-DARIVEAIISKNPE   82 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g-~~~~v~~Ll~~~~~   82 (355)
                      +.+|+...+.+.+.++..|.||||.|+..++.++++.+++++++. +..+. .|.||+|.|+..| ..+....+++.+.+
T Consensus       389 ~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~-lG~T~lhvaa~~g~~~~~~~~l~~~g~~  466 (1143)
T KOG4177|consen  389 VVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAK-LGYTPLHVAAKKGRYLQIARLLLQYGAD  466 (1143)
T ss_pred             HHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHhh-cCCChhhhhhhcccHhhhhhhHhhcCCC
Confidence            455666666667777888888888888888888888888877776 77776 7778888877777 67777777777777


Q ss_pred             cccccccCCchHHHHHHhcCChhHHHHHHhcC-----------------------------hhhhhhhccCCCCCCcHHH
Q 042924           83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLENN-----------------------------PLARSLINEGDAKGNTPLH  133 (355)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~-----------------------------~~~~~~~n~~d~~G~T~Lh  133 (355)
                      + +..-..|.||||+|+..|+.+.+..+++..                             ...|..++.++.+|.||||
T Consensus       467 ~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh  545 (1143)
T KOG4177|consen  467 P-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLH  545 (1143)
T ss_pred             c-chhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHH
Confidence            6 667777777777777777777776665521                             1146778889999999999


Q ss_pred             HHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCCCc
Q 042924          134 VLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYSDG  195 (355)
Q Consensus       134 ~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~~~  195 (355)
                      .|+.+|+ ..++++|+++|+|++.+++.|+||||.|+...   ..++.++|.+.|+.+...+
T Consensus       546 ~A~~~g~-v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G---~~~i~~LLlk~GA~vna~d  603 (1143)
T KOG4177|consen  546 VAVHYGN-VDLVKFLLEHGADVNAKDKLGYTPLHQAAQQG---HNDIAELLLKHGASVNAAD  603 (1143)
T ss_pred             HHHhcCC-chHHHHhhhCCccccccCCCCCChhhHHHHcC---hHHHHHHHHHcCCCCCccc
Confidence            9999996 89999999999999999999999999999766   7789999999888775443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=2.3e-20  Score=147.04  Aligned_cols=132  Identities=20%  Similarity=0.235  Sum_probs=116.5

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      ..|++||..++..+|.+|++|+||||.|+++|+.++++.|+..|++. +.+.. .|+||||-||.-.+.+++..|++.|+
T Consensus        77 ~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~-~GWTPLhSAckWnN~~va~~LLqhga  154 (228)
T KOG0512|consen   77 TEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTN-EGWTPLHSACKWNNFEVAGRLLQHGA  154 (228)
T ss_pred             HHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccc-cCccchhhhhcccchhHHHHHHhccC
Confidence            46899999999999999999999999999999999999999999998 77776 99999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCC-hhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcC
Q 042924           82 ECYELVDNRGWNFLHYAVVSFR-VEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIR  139 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~-~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~  139 (355)
                      ++ +.......||||+|+.+++ ...+++|+..   .+.....++..+.||+.+|-+.+
T Consensus       155 DV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~d---ryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  155 DV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHD---RYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             cc-cccccccchhhHHhhcccchHHHHHHHhhc---cccChhhhcCccchHHHHHHHhh
Confidence            99 8888888999999998765 4456666654   33445567788999999998876

>PHA02792 ankyrin-like protein; Provisional

Probab=99.83  E-value=2.5e-19  Score=172.06  Aligned_cols=129  Identities=16%  Similarity=0.027  Sum_probs=90.8

Q ss_pred             CchHHHHHHhcCCHHHHHHHhhhCCccccccccCC--chHHHHHHhcCChh---HHHHHHhcChhhhhhhccCCCCCCcH
Q 042924           57 KMTALHLAAGKGDARIVEAIISKNPECYELVDNRG--WNFLHYAVVSFRVE---KLTNLLENNPLARSLINEGDAKGNTP  131 (355)
Q Consensus        57 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g--~t~Lh~A~~~~~~~---~~~~Ll~~~~~~~~~~n~~d~~G~T~  131 (355)
                      +..++|.|+..|+.+++++|++.|+++ +.+|.+|  .||||+|..+...+   +++.+++    .|+++|.+|..|+||
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs----~GADIN~kD~~G~TP  413 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKP----YIDDINKIDKHGRSI  413 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh----cCCccccccccCcch
Confidence            344566677778888888888888877 6666664  57888776665543   3555566    677888888888888


Q ss_pred             HHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhh---CC-C---chHHHHHHHHHHcCCCC
Q 042924          132 LHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNY---GY-P---ELKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       132 Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~---~~-~---~~~~~i~~~l~~~~~~~  191 (355)
                      ||+|+..++ .+++++|+++|++++.+|..|+||+++|..   +. .   +...++.+++.+.+..+
T Consensus       414 Lh~Aa~~~n-~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        414 LYYCIESHS-VSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             HHHHHHcCC-HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            888888874 788888888888888888888888888863   11 1   11234566666655443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.83  E-value=1.7e-19  Score=174.82  Aligned_cols=162  Identities=18%  Similarity=0.128  Sum_probs=99.4

Q ss_pred             ccCCCCChHHHHHHHcC---CHHHHHHhhccCCCcccccccCCCchHHHHHHhcC--CHHHHHHHhhhCCcc-cccccc-
Q 042924           17 ETDQYGWTPIHYAAYYG---NYGTVNLLLETDQSASNIADKDRKMTALHLAAGKG--DARIVEAIISKNPEC-YELVDN-   89 (355)
Q Consensus        17 ~~d~~G~tpLh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~-~~~~d~-   89 (355)
                      .+|.+|+||||+|+..|   +.+++++|+++|+++ +.+|. .|.||||+|+..+  +.|++++|++.|... .+..|. 
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD~-~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~  113 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRNN-EGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNI  113 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccCC-CCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccccc
Confidence            55556666666666554   356666666666655 55554 5666666655544  455666666553211 021222 


Q ss_pred             ----------------------------------------CCchHHHHHHhcCChhHHHHHHhcChhhhhhhc-------
Q 042924           90 ----------------------------------------RGWNFLHYAVVSFRVEKLTNLLENNPLARSLIN-------  122 (355)
Q Consensus        90 ----------------------------------------~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n-------  122 (355)
                                                              .|.+|++++...++.+++++|++    .|+.++       
T Consensus       114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~----~g~~v~g~~~~~~  189 (672)
T PHA02730        114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLK----SECYSTGYVFRSC  189 (672)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHH----cCCcccccccccc
Confidence                                                    45666666666666666666666    455554       


Q ss_pred             cCCCCCC-cHHHHHHh------cCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHH
Q 042924          123 EGDAKGN-TPLHVLAA------IRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKD  186 (355)
Q Consensus       123 ~~d~~G~-T~Lh~A~~------~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~  186 (355)
                      ..|..+. |.||++..      .+ ..+++++|+++|+|+|.+|.+|+||||++.... +...+++++|.+
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n-~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~-~~~~eiv~~Li~  258 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESL-SKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCS-TIDIEIVKLLIK  258 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhcc-CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC-cccHHHHHHHHh
Confidence            2334444 55553333      33 488999999999999999999999999744322 114678888777

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.82  E-value=9.4e-20  Score=150.79  Aligned_cols=133  Identities=17%  Similarity=0.139  Sum_probs=112.5

Q ss_pred             cccccCCCchHHHHHHhcCCH----HHHHHHhhhCCccccccccCCchHHHHHHhcCChhH---HHHHHhcChhhhhhhc
Q 042924           50 NIADKDRKMTALHLAAGKGDA----RIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEK---LTNLLENNPLARSLIN  122 (355)
Q Consensus        50 ~~~~~~~g~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~---~~~Ll~~~~~~~~~~n  122 (355)
                      +..+. ++.+++|.||+.|+.    +++++|.+.++.. +.+|.+|+||||+|+.+|+.+.   +++|++    .|+++|
T Consensus        14 ~~~~~-~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~----~Gadin   87 (166)
T PHA02743         14 VEIDE-DEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVN----MGADIN   87 (166)
T ss_pred             hhhcc-CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHH----cCCCCC
Confidence            33444 778999999999998    5666777777766 7889999999999999988665   788888    788999


Q ss_pred             cCC-CCCCcHHHHHHhcCCchHHHHHHh-ccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          123 EGD-AKGNTPLHVLAAIRPNEFDVDLVR-KTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       123 ~~d-~~G~T~Lh~A~~~~~~~~~~~lL~-~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                      .+| ..|+||||+|+..++ .+++++|+ +.|++++.+|.+|+||+|+|....   ..+++++|.+.|....
T Consensus        88 ~~d~~~g~TpLh~A~~~g~-~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~---~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743         88 ARELGTGNTLLHIAASTKN-YELAEWLCRQLGVNLGAINYQHETAYHIAYKMR---DRRMMEILRANGAVCD  155 (166)
T ss_pred             CCCCCCCCcHHHHHHHhCC-HHHHHHHHhccCCCccCcCCCCCCHHHHHHHcC---CHHHHHHHHHcCCCCC
Confidence            998 589999999999996 88889888 589999999999999999999765   4578889988776554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.82  E-value=4.9e-19  Score=179.92  Aligned_cols=172  Identities=20%  Similarity=0.095  Sum_probs=127.1

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcC---CHHHHHHhhccCCCc-----cccc---ccCCCchHHHHHHhcCCHH
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYG---NYGTVNLLLETDQSA-----SNIA---DKDRKMTALHLAAGKGDAR   71 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g---~~~~v~~Ll~~~~~~-----~~~~---~~~~g~tpLh~Aa~~g~~~   71 (355)
                      .+.++|..+++    ++..|.||||.|+..+   ...+++.+.+.+.+.     .+..   +...|.||||+|+.+|+.+
T Consensus        67 eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~e  142 (743)
T TIGR00870        67 ELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYE  142 (743)
T ss_pred             HHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHH
Confidence            45666766665    6889999999999832   234445555444321     0111   1136999999999999999


Q ss_pred             HHHHHhhhCCccccccc--------------cCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHh
Q 042924           72 IVEAIISKNPECYELVD--------------NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA  137 (355)
Q Consensus        72 ~v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~  137 (355)
                      +++.|+++|+++ +.++              ..|+||||.|+..++.++++.|++    .|+++|.+|..|+||||+|+.
T Consensus       143 iVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~----~gadin~~d~~g~T~Lh~A~~  217 (743)
T TIGR00870       143 IVKLLLERGASV-PARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE----DPADILTADSLGNTLLHLLVM  217 (743)
T ss_pred             HHHHHHhCCCCC-CcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc----CCcchhhHhhhhhHHHHHHHh
Confidence            999999999887 3332              369999999999999999999999    678999999999999999999


Q ss_pred             cCCc--------hHHHHHHhccCccc-------ccccCCCCcHHHHHhhCCCchHHHHHHHHHH
Q 042924          138 IRPN--------EFDVDLVRKTQANY-------DAVNKQIVSVRHIFNYGYPELKEEIQKLSKD  186 (355)
Q Consensus       138 ~~~~--------~~~~~lL~~~ga~~-------~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~  186 (355)
                      .+..        ..+.+++.+.+++.       +..|++|.||+++|+...   +.++.+++.+
T Consensus       218 ~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g---~~~l~~lLL~  278 (743)
T TIGR00870       218 ENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEG---RIVLFRLKLA  278 (743)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcC---CccHHHHHHH
Confidence            8621        23445666555543       778999999999999654   3344444444

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.82  E-value=3.4e-20  Score=157.41  Aligned_cols=141  Identities=26%  Similarity=0.376  Sum_probs=119.1

Q ss_pred             HHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcccccc
Q 042924            8 LEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELV   87 (355)
Q Consensus         8 L~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~   87 (355)
                      |.....+.|..|..|.+|||+||+.|+..+++.|+.+|+.+ |..+. ...||||+|+.+||.++++.|++..+|+ +..
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnm-gddtplhlaaahghrdivqkll~~kadv-nav   96 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNM-GDDTPLHLAAAHGHRDIVQKLLSRKADV-NAV   96 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccC-CCCcchhhhhhcccHHHHHHHHHHhccc-chh
Confidence            44556678999999999999999999999999999999988 66665 5679999999999999999999999999 899


Q ss_pred             ccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccc
Q 042924           88 DNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYD  156 (355)
Q Consensus        88 d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~  156 (355)
                      +..|+|||||||.-|...+.+-|+.    .|+.++..+++|.|||..|--.-. ....++-.+.|-++|
T Consensus        97 nehgntplhyacfwgydqiaedli~----~ga~v~icnk~g~tpldkakp~l~-~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen   97 NEHGNTPLHYACFWGYDQIAEDLIS----CGAAVNICNKKGMTPLDKAKPMLK-NTLLEIAEKHGQSPN  160 (448)
T ss_pred             hccCCCchhhhhhhcHHHHHHHHHh----ccceeeecccCCCCchhhhchHHH-HHHHHHHHHhCCCCC
Confidence            9999999999999999999999999    889999999999999987632221 222233345565554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.81  E-value=2.1e-19  Score=172.48  Aligned_cols=107  Identities=22%  Similarity=0.151  Sum_probs=87.5

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHH-cCCHHHHHHhhccCCCcc--------------------------------
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAY-YGNYGTVNLLLETDQSAS--------------------------------   49 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~-~g~~~~v~~Ll~~~~~~~--------------------------------   49 (355)
                      ++.++|..+|+++|.+++.|.||+|+|+. .|+.|++++|+++|++..                                
T Consensus        86 Elvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (631)
T PHA02792         86 ELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYD  165 (631)
T ss_pred             HHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccc
Confidence            45555666789999999999999999976 699999999999987621                                


Q ss_pred             ---cccccCCCchHHHHHHhcC-------CHHHHHHHhhhCCccccccccCCchHHHHHHhcC--ChhHHHHHH
Q 042924           50 ---NIADKDRKMTALHLAAGKG-------DARIVEAIISKNPECYELVDNRGWNFLHYAVVSF--RVEKLTNLL  111 (355)
Q Consensus        50 ---~~~~~~~g~tpLh~Aa~~g-------~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~--~~~~~~~Ll  111 (355)
                         +..+ ..|.||||+|+..+       +.|+++.|+++|+++ +..|.+|.||||+|+.+.  +.|+++.|+
T Consensus       166 ~~i~~~~-~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~  237 (631)
T PHA02792        166 YTTDYDD-RMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALF  237 (631)
T ss_pred             cccccCC-CCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHH
Confidence               1233 36999999999998       899999999999998 778999999999999888  666666553

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=1.6e-19  Score=147.83  Aligned_cols=133  Identities=17%  Similarity=0.109  Sum_probs=104.1

Q ss_pred             cccccCCCchHHHHHHhcCCHHHHHHHhhhC----CccccccccCCchHHHHHHhcCChh---HHHHHHhcChhhhhhhc
Q 042924           50 NIADKDRKMTALHLAAGKGDARIVEAIISKN----PECYELVDNRGWNFLHYAVVSFRVE---KLTNLLENNPLARSLIN  122 (355)
Q Consensus        50 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~----~~~~~~~d~~g~t~Lh~A~~~~~~~---~~~~Ll~~~~~~~~~~n  122 (355)
                      +.++. +|.||||+|++.|+.+.+.......    +.....+|.+|+||||+|+..++.+   +++.|++    .|+++|
T Consensus        11 ~~~d~-~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~----~gadin   85 (154)
T PHA02736         11 SEPDI-EGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME----WGADIN   85 (154)
T ss_pred             HhcCC-CCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH----cCCCcc
Confidence            44555 8999999999999843221111111    1223557899999999999999864   5778888    788999


Q ss_pred             cCC-CCCCcHHHHHHhcCCchHHHHHHhc-cCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCC
Q 042924          123 EGD-AKGNTPLHVLAAIRPNEFDVDLVRK-TQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       123 ~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~-~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~  191 (355)
                      .+| .+|+||||+|+..++ .+++++|++ .|++++.+|..|+||+++|....   ..++.++|.+.|...
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~-~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~---~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQN-YELATWLCNQPGVNMEILNYAFKTPYYVACERH---DAKMMNILRAKGAQC  152 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCC-HHHHHHHHhCCCCCCccccCCCCCHHHHHHHcC---CHHHHHHHHHcCCCC
Confidence            998 499999999999996 888888886 59999999999999999999665   457788888766543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.78  E-value=3.8e-19  Score=168.45  Aligned_cols=177  Identities=24%  Similarity=0.219  Sum_probs=135.7

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcc
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC   83 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   83 (355)
                      +..||..+..+++..|..|.+|||+|++.|+.++++.++.++... |.... +|.||||.|+++||.+++.+|++++.+.
T Consensus        64 is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~-e~~tplhlaaqhgh~dvv~~Ll~~~adp  141 (854)
T KOG0507|consen   64 ISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNI-ENETPLHLAAQHGHLEVVFYLLKKNADP  141 (854)
T ss_pred             HHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCC-Ccccc-cCcCccchhhhhcchHHHHHHHhcCCCc
Confidence            455666777778888888899999999999999999888887444 66665 8889999999999999999999988888


Q ss_pred             ccccccCCchHHHHHHhcCChhHHHHHHhcChhh----hhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCccccccc
Q 042924           84 YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLA----RSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVN  159 (355)
Q Consensus        84 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~----~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n  159 (355)
                       ..+|+++.|+|-+|++.|+.++++.|++..-..    ......++..+-+|||+|+++|| .++++.|++.|.|+|...
T Consensus       142 -~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh-~~~~~~ll~ag~din~~t  219 (854)
T KOG0507|consen  142 -FIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGH-VECMQALLEAGFDINYTT  219 (854)
T ss_pred             -cccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcch-HHHHHHHHhcCCCccccc
Confidence             678888888888888888888888888752110    01133456677888999999886 888888888888888777


Q ss_pred             CCCCcHHHHHhhCCCchHHHHHHHHHHcC
Q 042924          160 KQIVSVRHIFNYGYPELKEEIQKLSKDVG  188 (355)
Q Consensus       160 ~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~  188 (355)
                      ++| |+||.|....   +.++++.|.+.|
T Consensus       220 ~~g-talheaalcg---k~evvr~ll~~g  244 (854)
T KOG0507|consen  220 EDG-TALHEAALCG---KAEVVRFLLEIG  244 (854)
T ss_pred             ccc-hhhhhHhhcC---cchhhhHHHhhc
Confidence            666 6777777554   445666666544

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.77  E-value=6.9e-17  Score=155.05  Aligned_cols=154  Identities=25%  Similarity=0.184  Sum_probs=131.4

Q ss_pred             cccccCCCCChHHHHHHHc---CCHHHHHHhhccCCCccc---ccccCCCchHHHHHHhcCCHHHHHHHhhhCCcccccc
Q 042924           14 LIKETDQYGWTPIHYAAYY---GNYGTVNLLLETDQSASN---IADKDRKMTALHLAAGKGDARIVEAIISKNPECYELV   87 (355)
Q Consensus        14 ~~~~~d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~---~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~   87 (355)
                      .++++...|.|.||.|..+   ++.++++.|++.-+...|   ..+...|.||||+|+.+.+.++|+.|++.|+|+ +.+
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aR  213 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HAR  213 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhH
Confidence            4677788999999999974   567999999996554433   333367999999999999999999999999987 221


Q ss_pred             ---------c--------------cCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHH
Q 042924           88 ---------D--------------NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFD  144 (355)
Q Consensus        88 ---------d--------------~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~  144 (355)
                               |              ..|+.||..|+..++++++++|++    .|+++|++|.+|||.||+.+..- ..+.
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~----~gAd~~aqDS~GNTVLH~lVi~~-~~~M  288 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA----HGADPNAQDSNGNTVLHMLVIHF-VTEM  288 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh----cCCCCCccccCCChHHHHHHHHH-HHHH
Confidence                     1              147899999999999999999999    88999999999999999988875 4677


Q ss_pred             HHHHhccCcc--cccccCCCCcHHHHHhhCC
Q 042924          145 VDLVRKTQAN--YDAVNKQIVSVRHIFNYGY  173 (355)
Q Consensus       145 ~~lL~~~ga~--~~~~n~~g~Tpl~~a~~~~  173 (355)
                      -.+++++|++  ...+|++|.|||.+|+...
T Consensus       289 y~~~L~~ga~~l~~v~N~qgLTPLtLAaklG  319 (782)
T KOG3676|consen  289 YDLALELGANALEHVRNNQGLTPLTLAAKLG  319 (782)
T ss_pred             HHHHHhcCCCccccccccCCCChHHHHHHhh
Confidence            7899999999  9999999999999999655

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.77  E-value=5e-18  Score=151.54  Aligned_cols=115  Identities=16%  Similarity=0.057  Sum_probs=101.6

Q ss_pred             cccCCCc-hHHHHHHhcCCHHHHHHHhhhCCcccccc----ccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCC-
Q 042924           52 ADKDRKM-TALHLAAGKGDARIVEAIISKNPECYELV----DNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGD-  125 (355)
Q Consensus        52 ~~~~~g~-tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~----d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-  125 (355)
                      +|+ .|+ ++||.|+..|+.++++.|++.|+++ +.+    |..|.||||+|+..++.++++.|++    .|+++|.++ 
T Consensus        28 ~d~-~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~----~GADVN~~~~  101 (300)
T PHA02884         28 KNK-ICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIR----YGADVNRYAE  101 (300)
T ss_pred             cCc-CCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCcCcccC
Confidence            444 444 4677778889999999999999998 555    4689999999999999999999999    789999864 


Q ss_pred             CCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCC
Q 042924          126 AKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGY  173 (355)
Q Consensus       126 ~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~  173 (355)
                      ..|+||||+|+..++ .+++++|++.|++++.+|.+|.||+++|....
T Consensus       102 ~~g~TpLh~Aa~~~~-~eivklLL~~GAdin~kd~~G~TpL~~A~~~~  148 (300)
T PHA02884        102 EAKITPLYISVLHGC-LKCLEILLSYGADINIQTNDMVTPIELALMIC  148 (300)
T ss_pred             CCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC
Confidence            689999999999996 99999999999999999999999999998643

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.75  E-value=2.4e-18  Score=163.11  Aligned_cols=171  Identities=18%  Similarity=0.132  Sum_probs=148.4

Q ss_pred             cccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCC
Q 042924           12 KNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRG   91 (355)
Q Consensus        12 ~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g   91 (355)
                      ++..|..|.+|.|.||.||.+|+.+++++|++..+-. .+.+. .|.+|||+|++.|+.++++.++..+.. .+..+..|
T Consensus        39 sds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~-kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~  115 (854)
T KOG0507|consen   39 SDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDT-KGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIEN  115 (854)
T ss_pred             CccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhc-cCcceEEehhhcCcchHHHHHHhcccC-CCcccccC
Confidence            4567899999999999999999999999999988766 77786 999999999999999999999999844 48899999


Q ss_pred             chHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcc--------cccccCCCC
Q 042924           92 WNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQAN--------YDAVNKQIV  163 (355)
Q Consensus        92 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~--------~~~~n~~g~  163 (355)
                      .||||.|+++|+.+++.+|++    .+++.-.+|+.+.|+|.+|++.|. ..+++.|++....        -..++-.+.
T Consensus       116 ~tplhlaaqhgh~dvv~~Ll~----~~adp~i~nns~~t~ldlA~qfgr-~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~  190 (854)
T KOG0507|consen  116 ETPLHLAAQHGHLEVVFYLLK----KNADPFIRNNSKETVLDLASRFGR-AEVVQMLLQKKFPVQSSLRVGDIKRPFPAI  190 (854)
T ss_pred             cCccchhhhhcchHHHHHHHh----cCCCccccCcccccHHHHHHHhhh-hHHHHHHhhhccchhhcccCCCCCCCCCCc
Confidence            999999999999999999999    788999999999999999999996 7888777655222        235567788


Q ss_pred             cHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          164 SVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       164 Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      +|+|+|.++.   +.++++.|+++|.+...
T Consensus       191 ~plHlaakng---h~~~~~~ll~ag~din~  217 (854)
T KOG0507|consen  191 YPLHLAAKNG---HVECMQALLEAGFDINY  217 (854)
T ss_pred             CCcchhhhcc---hHHHHHHHHhcCCCccc
Confidence            9999999776   77889999987765543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.75  E-value=7e-18  Score=147.61  Aligned_cols=140  Identities=22%  Similarity=0.248  Sum_probs=125.5

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHc-----CCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHH
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYY-----GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAI   76 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   76 (355)
                      ++|+.||..+-.++|.+|+-|+||.++|+..     .+.++|..|.+.| ++ |.+.+..|+|+|++|+.+|+.++++.|
T Consensus       282 ~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nV-NaKAsQ~gQTALMLAVSHGr~d~vk~L  359 (452)
T KOG0514|consen  282 DVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DV-NAKASQHGQTALMLAVSHGRVDMVKAL  359 (452)
T ss_pred             HHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Cc-chhhhhhcchhhhhhhhcCcHHHHHHH
Confidence            5789999999999999999999999999864     4678899999875 33 667666899999999999999999999


Q ss_pred             hhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHH
Q 042924           77 ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLV  148 (355)
Q Consensus        77 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL  148 (355)
                      |.+++|+ |.+|.+|-|+|++|+++||.+++++||..+   +.+....|.+|-|+|.+|-..|| .++..+|
T Consensus       360 LacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p---~cd~sLtD~DgSTAl~IAleagh-~eIa~ml  426 (452)
T KOG0514|consen  360 LACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVP---SCDISLTDVDGSTALSIALEAGH-REIAVML  426 (452)
T ss_pred             HHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccC---cccceeecCCCchhhhhHHhcCc-hHHHHHH
Confidence            9999999 999999999999999999999999999974   57888999999999999999997 6665444

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.74  E-value=5.3e-17  Score=127.05  Aligned_cols=124  Identities=34%  Similarity=0.430  Sum_probs=105.4

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHH
Q 042924           17 ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLH   96 (355)
Q Consensus        17 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (355)
                      .+|.+|+||||+|+..|+.++++.|++.+.+. +.++. .|.+|+|.|+..++.++++.|++.++.. +..+..|.||+|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~-~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~   78 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDN-DGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLH   78 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHH
Confidence            45678999999999999999999999988776 66666 8899999999999999999999988766 667888999999


Q ss_pred             HHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHH
Q 042924           97 YAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLV  148 (355)
Q Consensus        97 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL  148 (355)
                      +|+..++.++++.|++    .+...+..|..|.||+|.|...++ ..++++|
T Consensus        79 ~a~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~L  125 (126)
T cd00204          79 LAARNGNLDVVKLLLK----HGADVNARDKDGRTPLHLAAKNGH-LEVVKLL  125 (126)
T ss_pred             HHHHcCcHHHHHHHHH----cCCCCcccCCCCCCHHHHHHhcCC-HHHHHHh
Confidence            9999999999999988    556788888899999999998875 6666655

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.72  E-value=2.7e-17  Score=150.90  Aligned_cols=157  Identities=22%  Similarity=0.233  Sum_probs=135.7

Q ss_pred             HHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChh
Q 042924           26 IHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVE  105 (355)
Q Consensus        26 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  105 (355)
                      +.-||..|..+=++.|+..++++ +..+. +|.|+||-+|.-.+.++|++|++.++++ +..|.+|+||||.|+..|+..
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~-~~~n~-DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASP-NLCNV-DGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCc-cccCC-ccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHH
Confidence            56788999999999999999888 77776 9999999999999999999999999999 889999999999999999999


Q ss_pred             HHHHHHhcChh-------------------------------------------------------hhhhhccCCCCCCc
Q 042924          106 KLTNLLENNPL-------------------------------------------------------ARSLINEGDAKGNT  130 (355)
Q Consensus       106 ~~~~Ll~~~~~-------------------------------------------------------~~~~~n~~d~~G~T  130 (355)
                      ++.+|+.....                                                       .|...+.++..|-|
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T  200 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGAT  200 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccch
Confidence            99999863211                                                       12235555667999


Q ss_pred             HHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCC
Q 042924          131 PLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGR  189 (355)
Q Consensus       131 ~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~  189 (355)
                      .||.|+.+| ..++.++|++.|.+++.+|.+|+||||.|+.+.   +....++|.++|.
T Consensus       201 ~lHvAaa~G-y~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg---~~~~~elL~~~ga  255 (527)
T KOG0505|consen  201 ALHVAAANG-YTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWG---QEDACELLVEHGA  255 (527)
T ss_pred             HHHHHHhhh-HHHHHHHHHHhccCcccccccCCCcccHHHHhh---hHhHHHHHHHhhc
Confidence            999999999 699999999999999999999999999999876   5566666666443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.71  E-value=3.4e-16  Score=150.35  Aligned_cols=167  Identities=23%  Similarity=0.263  Sum_probs=134.5

Q ss_pred             hHHHHHHHhccccccccC----CCCChHHHHHHHcCCHHHHHHhhccCCCccccccc----------------------C
Q 042924            2 AALSKLLEIKKNLIKETD----QYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADK----------------------D   55 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d----~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~----------------------~   55 (355)
                      +.+..||+..|.++|..-    -.|.||||.|+.+.+.++|++|++.|+|+ +.+..                      .
T Consensus       160 ~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~~~dqk~~rk~T~Y~G~~Y  238 (782)
T KOG3676|consen  160 ELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFCPDDQKASRKSTNYTGYFY  238 (782)
T ss_pred             HHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccCcccccccccccCCcceee
Confidence            577889999998887652    36999999999999999999999999887 32211                      2


Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHH
Q 042924           56 RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL  135 (355)
Q Consensus        56 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A  135 (355)
                      .|..||-.||+.++.|++++|+++++|+ +.+|.+|+|.||..+.+-..++...+++.+..  .....+|+.|-|||-+|
T Consensus       239 fGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtLA  315 (782)
T KOG3676|consen  239 FGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTLA  315 (782)
T ss_pred             eccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChHHHH
Confidence            4778999999999999999999999999 99999999999999999888999999994421  33888999999999999


Q ss_pred             HhcCCchHHHHHHhcc-C-------------cccccccC--CCCcHHHHHhhCC
Q 042924          136 AAIRPNEFDVDLVRKT-Q-------------ANYDAVNK--QIVSVRHIFNYGY  173 (355)
Q Consensus       136 ~~~~~~~~~~~lL~~~-g-------------a~~~~~n~--~g~Tpl~~a~~~~  173 (355)
                      ++.|. .++.+.+++. +             -+.+..|.  +..++|.+...+.
T Consensus       316 aklGk-~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg~  368 (782)
T KOG3676|consen  316 AKLGK-KEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYGI  368 (782)
T ss_pred             HHhhh-HHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcCC
Confidence            99996 7776666655 1             12233332  4557788877553

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.71  E-value=4.3e-17  Score=120.43  Aligned_cols=89  Identities=34%  Similarity=0.397  Sum_probs=49.0

Q ss_pred             HHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCC
Q 042924           61 LHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRP  140 (355)
Q Consensus        61 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~  140 (355)
                      ||+|++.|+.++++.|++.+++. +.    |+||||+|+.+|+.+++++|++    .|.+++.+|.+|+||||+|+..++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLE----NGADINSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHH----TTTCTT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHH----hcccccccCCCCCCHHHHHHHcCC
Confidence            45555666666666666555444 21    5556666666666666666655    445555555566666666666553


Q ss_pred             chHHHHHHhccCccccccc
Q 042924          141 NEFDVDLVRKTQANYDAVN  159 (355)
Q Consensus       141 ~~~~~~lL~~~ga~~~~~n  159 (355)
                       .+++++|+++|++++.+|
T Consensus        72 -~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   72 -LEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             -HHHHHHHHHTTT-TTSS-
T ss_pred             -HHHHHHHHHcCCCCCCcC
Confidence             555555555566555544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.70  E-value=9.4e-17  Score=118.62  Aligned_cols=89  Identities=33%  Similarity=0.414  Sum_probs=79.5

Q ss_pred             HHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChh
Q 042924           26 IHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVE  105 (355)
Q Consensus        26 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  105 (355)
                      ||+||+.|+.++++.|++.+.+. +     .|.||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+.+++.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~-----~~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-N-----LGNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-T-----SSSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-C-----CCCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHH
Confidence            79999999999999999988766 2     2789999999999999999999999998 888999999999999999999


Q ss_pred             HHHHHHhcChhhhhhhccCC
Q 042924          106 KLTNLLENNPLARSLINEGD  125 (355)
Q Consensus       106 ~~~~Ll~~~~~~~~~~n~~d  125 (355)
                      ++++|++    .|.+++.+|
T Consensus        74 ~~~~Ll~----~g~~~~~~n   89 (89)
T PF12796_consen   74 IVKLLLE----HGADVNIRN   89 (89)
T ss_dssp             HHHHHHH----TTT-TTSS-
T ss_pred             HHHHHHH----cCCCCCCcC
Confidence            9999999    677887765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.65  E-value=2.3e-15  Score=117.69  Aligned_cols=112  Identities=30%  Similarity=0.326  Sum_probs=104.2

Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHH
Q 042924           56 RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL  135 (355)
Q Consensus        56 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A  135 (355)
                      .|.||||.|+..|+.++++.|++.+++. ...|..|.+|+|.|+..++.++++.|++    .+..++..|..|.||+|+|
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~~~~l~~a   80 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLE----KGADVNARDKDGNTPLHLA   80 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCHHHHH
Confidence            8999999999999999999999999887 7789999999999999999999999999    5567888899999999999


Q ss_pred             HhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCC
Q 042924          136 AAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGY  173 (355)
Q Consensus       136 ~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~  173 (355)
                      +..++ ..++++|.+.+.+.+..|..|.||++.+....
T Consensus        81 ~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~  117 (126)
T cd00204          81 ARNGN-LDVVKLLLKHGADVNARDKDGRTPLHLAAKNG  117 (126)
T ss_pred             HHcCc-HHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            99996 89999999999999999999999999998653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=4.2e-15  Score=128.66  Aligned_cols=131  Identities=28%  Similarity=0.304  Sum_probs=94.5

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCC-----HHHHHHHhhhCC--cccccc
Q 042924           15 IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGD-----ARIVEAIISKNP--ECYELV   87 (355)
Q Consensus        15 ~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~-----~~~v~~Ll~~~~--~~~~~~   87 (355)
                      ....+..+.+|+|.++..+..+.++.++..+.++ +.++. .|.||||+|+..|+     .++++.|++.++  +..+.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDA-DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccC-CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            3445556777777777777777777777777777 67776 77777777777777     777777777777  455666


Q ss_pred             ccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccC
Q 042924           88 DNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQ  152 (355)
Q Consensus        88 d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g  152 (355)
                      |.+|+||||+|+..|+.++++.|++    .+++++.+|..|.|++|.|+..++ ......+.+.+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~----~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~l~~~~  203 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLE----AGADPNSRNSYGVTALDPAAKNGR-IELVKLLLDKG  203 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHh----cCCCCcccccCCCcchhhhcccch-HHHHHHHHhcC
Confidence            7777777777777777777777777    566777777777777777777774 66666666544

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.58  E-value=9.7e-15  Score=103.31  Aligned_cols=104  Identities=18%  Similarity=0.139  Sum_probs=90.3

Q ss_pred             HHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcC
Q 042924           60 ALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIR  139 (355)
Q Consensus        60 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~  139 (355)
                      -+.++.++|..+-|+..+..+-++.+.  ..|++|||+|+-.|+.+++++|+.    .|++++.+|+.|-|||-.|+..|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~----iGA~i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLIS----IGANIQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHH----hccccCCccccCCcHHHHHHHHh
Confidence            456788899999999999888666333  389999999999999999999998    78899999999999999999999


Q ss_pred             CchHHHHHHhccCcccccccCCCCcHHHHHh
Q 042924          140 PNEFDVDLVRKTQANYDAVNKQIVSVRHIFN  170 (355)
Q Consensus       140 ~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~  170 (355)
                      | ..|+++|++.|+|-..+-.+|.+.++.+.
T Consensus        79 H-~~cVklLL~~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   79 H-RDCVKLLLQNGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             h-HHHHHHHHHcCcccceeCCCchhHHhhcc
Confidence            7 89999999999999999999988887654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=1.4e-13  Score=119.14  Aligned_cols=128  Identities=30%  Similarity=0.289  Sum_probs=114.2

Q ss_pred             ccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCC-----hhHHHHHHhcChhhhh---hhc
Q 042924           51 IADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFR-----VEKLTNLLENNPLARS---LIN  122 (355)
Q Consensus        51 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~~~~Ll~~~~~~~~---~~n  122 (355)
                      ..+. .+.+++|.++..+..++++.++..+.++ +.+|..|.||||+|+.+++     .++++.|++    .|+   ..+
T Consensus        68 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~----~g~~~~~~~  141 (235)
T COG0666          68 ARDL-DGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE----AGADLDVNN  141 (235)
T ss_pred             cCCc-cccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHH----cCCCCCCcc
Confidence            3444 6899999999999999999999999999 9999999999999999999     999999999    666   677


Q ss_pred             cCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcC
Q 042924          123 EGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVG  188 (355)
Q Consensus       123 ~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~  188 (355)
                      .+|.+|+||||+|+..|+ ..++++|++.|++++.+|..|.|+++.+....   ...+.+.+.+.+
T Consensus       142 ~~~~~g~tpl~~A~~~~~-~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~---~~~~~~~l~~~~  203 (235)
T COG0666         142 LRDEDGNTPLHWAALNGD-ADIVELLLEAGADPNSRNSYGVTALDPAAKNG---RIELVKLLLDKG  203 (235)
T ss_pred             ccCCCCCchhHHHHHcCc-hHHHHHHHhcCCCCcccccCCCcchhhhcccc---hHHHHHHHHhcC
Confidence            779999999999999997 78999999999999999999999999999665   556666666644

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=4.6e-14  Score=94.14  Aligned_cols=56  Identities=43%  Similarity=0.626  Sum_probs=28.5

Q ss_pred             HHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHH
Q 042924            7 LLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLA   64 (355)
Q Consensus         7 lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~A   64 (355)
                      ||+.++.+++.+|..|.||||+||..|+.+++++|++.+.++ +.+++ .|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~-~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDK-DGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---T-TS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcC-CCCCHHHhC
Confidence            355556777888888888888888888888888888777776 77777 888888876

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.46  E-value=7.1e-14  Score=137.33  Aligned_cols=162  Identities=21%  Similarity=0.215  Sum_probs=123.7

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +...++|...++++.-+|+.|.+||.+|+-.||..+|+.|+++.+++....|+ .+.|+|-+||..|+.++++.||..++
T Consensus       770 ~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdr-tkdt~lSlacsggr~~vvelLl~~ga  848 (2131)
T KOG4369|consen  770 REEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDR-TKDTMLSLACSGGRTRVVELLLNAGA  848 (2131)
T ss_pred             HHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhccc-ccCceEEEecCCCcchHHHHHHHhhc
Confidence            34566777777888899999999999999999999999999888887556665 88888888888888888888888888


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCC--CCCCcHHHHHHhcCCchHHHHHHhccCccccccc
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGD--AKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVN  159 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d--~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n  159 (355)
                      +. +.++....|||.+|...|..+++..|+.    .|..+|.+.  +.|-.||++|..+|| ....+.|++.|-|+|..=
T Consensus       849 nk-ehrnvsDytPlsla~Sggy~~iI~~llS----~GseInSrtgSklgisPLmlatmngh-~~at~~ll~~gsdiNaqI  922 (2131)
T KOG4369|consen  849 NK-EHRNVSDYTPLSLARSGGYTKIIHALLS----SGSEINSRTGSKLGISPLMLATMNGH-QAATLSLLQPGSDINAQI  922 (2131)
T ss_pred             cc-cccchhhcCchhhhcCcchHHHHHHHhh----cccccccccccccCcchhhhhhhccc-cHHHHHHhcccchhcccc
Confidence            77 7777778888888888888888888887    566666554  457777777777775 666666777776666442


Q ss_pred             -CCCCcHHHHHh
Q 042924          160 -KQIVSVRHIFN  170 (355)
Q Consensus       160 -~~g~Tpl~~a~  170 (355)
                       .+.+|+|-+|+
T Consensus       923 eTNrnTaltla~  934 (2131)
T KOG4369|consen  923 ETNRNTALTLAL  934 (2131)
T ss_pred             ccccccceeecc
Confidence             34446666665

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.44  E-value=2e-13  Score=90.51  Aligned_cols=54  Identities=43%  Similarity=0.616  Sum_probs=32.5

Q ss_pred             CChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHh
Q 042924           22 GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII   77 (355)
Q Consensus        22 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll   77 (355)
                      |+||||+||+.|+.+++++|++++.++ +.+|. +|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~-~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDE-DGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-T-TS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHccCHHHHHHHC
Confidence            566777777777777777777666665 55555 6777777777777777776664

...

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.43  E-value=2.6e-13  Score=133.50  Aligned_cols=156  Identities=23%  Similarity=0.172  Sum_probs=67.4

Q ss_pred             HHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcccc
Q 042924            6 KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYE   85 (355)
Q Consensus         6 ~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~   85 (355)
                      .||..+.+.-.+.|+++.|+|.+||..|+.++|.+||..|++. ..++- ...|||.+|...|.+++++.|+..|.++..
T Consensus       808 ~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gank-ehrnv-sDytPlsla~Sggy~~iI~~llS~GseInS  885 (2131)
T KOG4369|consen  808 DLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANK-EHRNV-SDYTPLSLARSGGYTKIIHALLSSGSEINS  885 (2131)
T ss_pred             HHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccc-cccch-hhcCchhhhcCcchHHHHHHHhhccccccc
Confidence            3333333333334555555555555555555555555554443 22222 334555555555555555555554444421


Q ss_pred             cc-ccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCC-CCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCC
Q 042924           86 LV-DNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGD-AKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIV  163 (355)
Q Consensus        86 ~~-d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~  163 (355)
                      .. .+.|-.||++|..+|+.+....|++    .|.++|.+- .+-||+|-+|+-.|. .+++.+|+.+.+++..+-+.|.
T Consensus       886 rtgSklgisPLmlatmngh~~at~~ll~----~gsdiNaqIeTNrnTaltla~fqgr-~evv~lLLa~~anvehRaktgl  960 (2131)
T KOG4369|consen  886 RTGSKLGISPLMLATMNGHQAATLSLLQ----PGSDINAQIETNRNTALTLALFQGR-PEVVFLLLAAQANVEHRAKTGL  960 (2131)
T ss_pred             ccccccCcchhhhhhhccccHHHHHHhc----ccchhccccccccccceeeccccCc-chHHHHHHHHhhhhhhhcccCC
Confidence            11 1234444444444444444444444    333333332 233344444444442 3334444444444444444444


Q ss_pred             cHHHH
Q 042924          164 SVRHI  168 (355)
Q Consensus       164 Tpl~~  168 (355)
                      |||.-
T Consensus       961 tplme  965 (2131)
T KOG4369|consen  961 TPLME  965 (2131)
T ss_pred             cccch
Confidence            44433

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.43  E-value=1.1e-13  Score=92.36  Aligned_cols=50  Identities=30%  Similarity=0.250  Sum_probs=25.1

Q ss_pred             hhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHH
Q 042924          119 SLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIF  169 (355)
Q Consensus       119 ~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a  169 (355)
                      .++|.+|.+|+||||+|+..|+ .+++++|++.|+|++.+|++|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~-~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGH-SEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT--HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCc-HHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            5677777777777777777774 6677777777777777777777777765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.43  E-value=4.9e-13  Score=133.51  Aligned_cols=109  Identities=19%  Similarity=0.161  Sum_probs=94.8

Q ss_pred             HHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCCh
Q 042924           25 PIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRV  104 (355)
Q Consensus        25 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  104 (355)
                      +|+.|+..|+.+.++.|++.|+++ +.+|. .|.||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+.+++.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~-~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDY-DGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcH
Confidence            488999999999999999999887 77887 9999999999999999999999999998 88999999999999999999


Q ss_pred             hHHHHHHhcC---hhhhhhhccCCCCCCcHHHHHH
Q 042924          105 EKLTNLLENN---PLARSLINEGDAKGNTPLHVLA  136 (355)
Q Consensus       105 ~~~~~Ll~~~---~~~~~~~n~~d~~G~T~Lh~A~  136 (355)
                      ++++.|++..   ...+++.+..+.+|++|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999851   1136777778888887776554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.42  E-value=5.4e-13  Score=133.21  Aligned_cols=106  Identities=22%  Similarity=0.107  Sum_probs=97.9

Q ss_pred             hHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhc
Q 042924           59 TALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI  138 (355)
Q Consensus        59 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~  138 (355)
                      .+|+.|+..|+.+.++.|++.++++ +.+|.+|+||||+|+.+|+.++++.|++    .|+++|.+|.+|+||||+|+..
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~----~Gadvn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLE----FGADPTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHC
Confidence            3588999999999999999999998 8889999999999999999999999999    7889999999999999999999


Q ss_pred             CCchHHHHHHhcc-------CcccccccCCCCcHHHHHh
Q 042924          139 RPNEFDVDLVRKT-------QANYDAVNKQIVSVRHIFN  170 (355)
Q Consensus       139 ~~~~~~~~lL~~~-------ga~~~~~n~~g~Tpl~~a~  170 (355)
                      ++ .+++++|+++       |++.+..+..|.+|+....
T Consensus       159 g~-~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        159 GF-REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             Cc-HHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            96 8999999988       9999999998888876665

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.41  E-value=8.2e-13  Score=93.61  Aligned_cols=102  Identities=21%  Similarity=0.157  Sum_probs=86.4

Q ss_pred             hHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCC
Q 042924           24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFR  103 (355)
Q Consensus        24 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  103 (355)
                      --..+++++|..+-|+..+..|-+. |..  ..|++|||+|+-.|..+++++|+..|+++ +.+|+.|-|||..|+..||
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nV-n~~--~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNV-NEI--YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccH-HHH--hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhh
Confidence            3467889999999999988887544 333  37899999999999999999999999998 8889999999999999999


Q ss_pred             hhHHHHHHhcChhhhhhhccCCCCCCcHHH
Q 042924          104 VEKLTNLLENNPLARSLINEGDAKGNTPLH  133 (355)
Q Consensus       104 ~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh  133 (355)
                      .+++++|++    .|++-..+..+|.+.+.
T Consensus        80 ~~cVklLL~----~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   80 RDCVKLLLQ----NGADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHHH----cCcccceeCCCchhHHh
Confidence            999999999    66777777778877665

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.39  E-value=7.9e-13  Score=87.61  Aligned_cols=54  Identities=30%  Similarity=0.419  Sum_probs=39.1

Q ss_pred             CchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHH
Q 042924           57 KMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLL  111 (355)
Q Consensus        57 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll  111 (355)
                      |+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888888777 666888888888888888888887775

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.38  E-value=2.1e-12  Score=110.17  Aligned_cols=106  Identities=23%  Similarity=0.256  Sum_probs=89.2

Q ss_pred             HHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccc
Q 042924            5 SKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECY   84 (355)
Q Consensus         5 ~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   84 (355)
                      ..||.. ...+|.+|.+|.|||..|+..|+.+++++||+.|+|++.-++. .+.||||.|+..|+.++.+.|++.|+.. 
T Consensus        29 ~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg-~~YTpLmFAALSGn~dvcrllldaGa~~-  105 (396)
T KOG1710|consen   29 LALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHG-TLYTPLMFAALSGNQDVCRLLLDAGARM-  105 (396)
T ss_pred             HHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccccc-ccccHHHHHHHcCCchHHHHHHhccCcc-
Confidence            344444 3457899999999999999999999999999999998444444 8899999999999999999999999888 


Q ss_pred             cccccCCchHHHHHHhcCChhHHHHHHhc
Q 042924           85 ELVDNRGWNFLHYAVVSFRVEKLTNLLEN  113 (355)
Q Consensus        85 ~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~  113 (355)
                      ...|.-|+|+-.+|+.-|+.+++..+-+.
T Consensus       106 ~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  106 YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            77889999999999999999888766543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.31  E-value=1.1e-11  Score=105.86  Aligned_cols=121  Identities=21%  Similarity=0.170  Sum_probs=109.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHh
Q 042924           21 YGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVV  100 (355)
Q Consensus        21 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  100 (355)
                      .-.+||..+...|..+....||+.-... |.+|. .|++||..|+..|+.+.++.|++.|+|++..++..+.||||.|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~-sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQV-NQRDP-SGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhh-hccCC-CcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            4568999999999999999999864444 88887 999999999999999999999999999988899999999999999


Q ss_pred             cCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHH
Q 042924          101 SFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLV  148 (355)
Q Consensus       101 ~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL  148 (355)
                      .|+.++.+.|++    .|+.....+.-|+|+-.+|+.-|+ -+++..+
T Consensus        89 SGn~dvcrllld----aGa~~~~vNsvgrTAaqmAAFVG~-H~CV~iI  131 (396)
T KOG1710|consen   89 SGNQDVCRLLLD----AGARMYLVNSVGRTAAQMAAFVGH-HECVAII  131 (396)
T ss_pred             cCCchHHHHHHh----ccCccccccchhhhHHHHHHHhcc-hHHHHHH
Confidence            999999999999    778888888999999999999996 6776554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=1.1e-11  Score=113.81  Aligned_cols=101  Identities=23%  Similarity=0.231  Sum_probs=47.5

Q ss_pred             HHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchH
Q 042924           64 AAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEF  143 (355)
Q Consensus        64 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~  143 (355)
                      |+..|-.|+|+.++..-.|+ ...+..|-|+||-|+..||.++|++|++    .|+++|..|.+|+||||.|+..++ ..
T Consensus       557 aaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~----~ganVNa~DSdGWTPLHCAASCNn-v~  630 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIE----FGANVNAADSDGWTPLHCAASCNN-VP  630 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHh----cCCcccCccCCCCchhhhhhhcCc-hH
Confidence            44445555555554444443 3344445555555555555555555554    444555555555555555544442 44


Q ss_pred             HHHHHhccCccccccc-CCCCcHHHHHh
Q 042924          144 DVDLVRKTQANYDAVN-KQIVSVRHIFN  170 (355)
Q Consensus       144 ~~~lL~~~ga~~~~~n-~~g~Tpl~~a~  170 (355)
                      +++.|.+.|+-+-+.. .+++||.+-+.
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eKCe  658 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEKCE  658 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhhcc
Confidence            4444444444432222 34445544443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=1.7e-11  Score=112.59  Aligned_cols=130  Identities=20%  Similarity=0.224  Sum_probs=101.5

Q ss_pred             CChHH---HHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHH
Q 042924           22 GWTPI---HYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYA   98 (355)
Q Consensus        22 G~tpL---h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   98 (355)
                      ...||   .-|+..|..++|+..+..-.|+ ...++ +|.|+||-|++.||.+||++|++.|.++ +..|.+||||||+|
T Consensus       547 rfnPLaLLLDaaLeGEldlVq~~i~ev~Dp-SqpNd-EGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCA  623 (752)
T KOG0515|consen  547 RFNPLALLLDAALEGELDLVQRIIYEVTDP-SQPND-EGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCA  623 (752)
T ss_pred             ecchHHHHHhhhhcchHHHHHHHHHhhcCC-CCCCc-cchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhh
Confidence            34565   4588899999999999876666 45554 8999999999999999999999999999 89999999999999


Q ss_pred             HhcCChhHHHHHHhcChhhhhh-hccCCCCCCcHHHHHHh--cCCchHHHHHHhccCccccccc
Q 042924           99 VVSFRVEKLTNLLENNPLARSL-INEGDAKGNTPLHVLAA--IRPNEFDVDLVRKTQANYDAVN  159 (355)
Q Consensus        99 ~~~~~~~~~~~Ll~~~~~~~~~-~n~~d~~G~T~Lh~A~~--~~~~~~~~~lL~~~ga~~~~~n  159 (355)
                      +..++..+++.|++    .|+. +-..-.++.|+..-.-.  .| ...|.++|....-.....|
T Consensus       624 ASCNnv~~ckqLVe----~GaavfAsTlSDmeTa~eKCee~eeG-Y~~CsqyL~~vqesmG~mN  682 (752)
T KOG0515|consen  624 ASCNNVPMCKQLVE----SGAAVFASTLSDMETAAEKCEEMEEG-YDQCSQYLYGVQESMGSMN  682 (752)
T ss_pred             hhcCchHHHHHHHh----ccceEEeeecccccchhhhcchhhhh-HHHHHHHHHHHHHhhcccc
Confidence            99999999999999    4444 44445788888765433  34 4567777754433333444

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.06  E-value=7.6e-11  Score=113.52  Aligned_cols=89  Identities=25%  Similarity=0.319  Sum_probs=82.9

Q ss_pred             ccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccC
Q 042924           11 KKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNR   90 (355)
Q Consensus        11 ~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   90 (355)
                      +....|.+|..|+|+||+|+..|..++++.||++|.++ +.+|.+.|+||||.|...|+.|++-.||.+|... .++|++
T Consensus        41 c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL-~i~Dke  118 (1267)
T KOG0783|consen   41 CQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL-RIKDKE  118 (1267)
T ss_pred             hhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCce-EEeccc
Confidence            45678999999999999999999999999999999998 8999889999999999999999999999999888 899999


Q ss_pred             CchHHHHHHhc
Q 042924           91 GWNFLHYAVVS  101 (355)
Q Consensus        91 g~t~Lh~A~~~  101 (355)
                      |..||..-++-
T Consensus       119 glsplq~~~r~  129 (1267)
T KOG0783|consen  119 GLSPLQFLSRV  129 (1267)
T ss_pred             CCCHHHHHhhc
Confidence            99999988763

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.82  E-value=1.4e-08  Score=93.01  Aligned_cols=95  Identities=25%  Similarity=0.225  Sum_probs=85.4

Q ss_pred             cccCCCCChH------HHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcccccccc
Q 042924           16 KETDQYGWTP------IHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDN   89 (355)
Q Consensus        16 ~~~d~~G~tp------Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~   89 (355)
                      -.+|.+|.+.      ||..++.|+.+..-.||..|++. |..+.+.|.||||.|++.|+..-+++|+-+|+|+ ...|.
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~-N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~  198 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQA-NFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDS  198 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHccccc-CCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCC
Confidence            4567777765      89999999999999999999998 5555569999999999999999999999999999 88999


Q ss_pred             CCchHHHHHHhcCChhHHHHHHh
Q 042924           90 RGWNFLHYAVVSFRVEKLTNLLE  112 (355)
Q Consensus        90 ~g~t~Lh~A~~~~~~~~~~~Ll~  112 (355)
                      +|.||+.+|-..||.++.+.|++
T Consensus       199 ~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCcHHHHHHhcCchHHHHHHHH
Confidence            99999999999999988887776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.80  E-value=2.4e-08  Score=92.84  Aligned_cols=109  Identities=17%  Similarity=0.159  Sum_probs=63.3

Q ss_pred             HHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCC
Q 042924           61 LHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRP  140 (355)
Q Consensus        61 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~  140 (355)
                      +..|+..+..--+...-..|.+. ..++.+..+.||+|+..|+.+++++++.+.+  ...+++.|..|.|+||-|+..++
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhcc
Confidence            33444444444444444445555 4556666666666666666666666666543  24556666666666666666663


Q ss_pred             chHHHHHHhccCcccccccCCCCcHHHHHhhCC
Q 042924          141 NEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGY  173 (355)
Q Consensus       141 ~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~  173 (355)
                       ..+..+|.+.|+.+...|.+|.||-+-|.+..
T Consensus       947 -r~vc~~lvdagasl~ktd~kg~tp~eraqqa~  978 (1004)
T KOG0782|consen  947 -RAVCQLLVDAGASLRKTDSKGKTPQERAQQAG  978 (1004)
T ss_pred             -hHHHHHHHhcchhheecccCCCChHHHHHhcC
Confidence             55666666666666666666666666665433

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.77  E-value=5.3e-09  Score=101.12  Aligned_cols=97  Identities=22%  Similarity=0.297  Sum_probs=77.2

Q ss_pred             HHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccc-cCCchHHHHHHhcCChhHHHHHHhcCh
Q 042924           37 TVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVD-NRGWNFLHYAVVSFRVEKLTNLLENNP  115 (355)
Q Consensus        37 ~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~  115 (355)
                      +..++-+.+.+.+++.|. .|+|+||+|+..|..+++++|+++|.++ ..+| ..|+||||-|+.+|+.+++..|++   
T Consensus        33 lk~F~~k~c~n~anikD~-~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~---  107 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDR-YGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLS---  107 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHh-hccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHh---
Confidence            344445566666788887 8889999988888888999999888888 4455 468889999988898888888888   


Q ss_pred             hhhhhhccCCCCCCcHHHHHHhcC
Q 042924          116 LARSLINEGDAKGNTPLHVLAAIR  139 (355)
Q Consensus       116 ~~~~~~n~~d~~G~T~Lh~A~~~~  139 (355)
                       .|..+..+|++|.+||..-++-.
T Consensus       108 -~g~SL~i~Dkeglsplq~~~r~~  130 (1267)
T KOG0783|consen  108 -KGRSLRIKDKEGLSPLQFLSRVL  130 (1267)
T ss_pred             -cCCceEEecccCCCHHHHHhhcc
Confidence             67788888888988888877744

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.77  E-value=2.4e-08  Score=91.47  Aligned_cols=87  Identities=26%  Similarity=0.225  Sum_probs=74.6

Q ss_pred             HHHHHHhcCChhHHHHHHhcChhhhhhhccCC-CCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHh-h
Q 042924           94 FLHYAVVSFRVEKLTNLLENNPLARSLINEGD-AKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFN-Y  171 (355)
Q Consensus        94 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~-~  171 (355)
                      -||..++.|..++.-.|+.    .|++.|..+ ..|+||||.|++.|+ ..-+++|.-+|+|++..|.+|.||+++|. .
T Consensus       136 QLhasvRt~nlet~LRll~----lGA~~N~~hpekg~TpLHvAAk~Gq-~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~  210 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLS----LGAQANFFHPEKGNTPLHVAAKAGQ-ILQAELLAVYGADPGAQDSSGMTPVDYARQG  210 (669)
T ss_pred             HHHHHhhcccHHHHHHHHH----cccccCCCCcccCCchhHHHHhccc-hhhhhHHhhccCCCCCCCCCCCcHHHHHHhc
Confidence            5899999999999888888    788999887 469999999999996 77789999999999999999999999998 4


Q ss_pred             CCCchHHHHHHHHH
Q 042924          172 GYPELKEEIQKLSK  185 (355)
Q Consensus       172 ~~~~~~~~i~~~l~  185 (355)
                      ++.++.+.+++..-
T Consensus       211 gH~~laeRl~e~~y  224 (669)
T KOG0818|consen  211 GHHELAERLVEIQY  224 (669)
T ss_pred             CchHHHHHHHHHHH
Confidence            55566666666543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.74  E-value=1e-08  Score=93.41  Aligned_cols=93  Identities=23%  Similarity=0.208  Sum_probs=79.9

Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHH
Q 042924           56 RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL  135 (355)
Q Consensus        56 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A  135 (355)
                      ++..++.+|++.|.+..++.+.-.+.|. +.+|.+.+|+||+|+..|+.+++++|++.   .+.+.+.+|++|+|||.-|
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~---~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNA---CKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHH---HcCCCChhhccCCCcchHh
Confidence            5667888999999999999888888888 88899999999999999999999999886   5678888999999999999


Q ss_pred             HhcCCchHHHHHHhccCc
Q 042924          136 AAIRPNEFDVDLVRKTQA  153 (355)
Q Consensus       136 ~~~~~~~~~~~lL~~~ga  153 (355)
                      ...+| .+++++|.+...
T Consensus       581 ~~F~h-~~v~k~L~~~~~  597 (622)
T KOG0506|consen  581 KHFKH-KEVVKLLEEAQY  597 (622)
T ss_pred             HhcCc-HHHHHHHHHHhc
Confidence            99886 888888876644

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.68  E-value=1.6e-08  Score=92.16  Aligned_cols=94  Identities=21%  Similarity=0.168  Sum_probs=84.9

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHH
Q 042924           17 ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLH   96 (355)
Q Consensus        17 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (355)
                      .++.++..++.+|++.|++..++.+.-.+.+. +.+|- +.+|+||.|+..|+++++++|++.+....+.+|+.|+|||.
T Consensus       501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~Dy-D~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlD  578 (622)
T KOG0506|consen  501 PRENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDY-DDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLD  578 (622)
T ss_pred             cccccchhhhhhhhhcCCHHHHHHHHHhcccc-ccccc-ccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcch
Confidence            34466788999999999999999999888887 78886 88999999999999999999999987666889999999999


Q ss_pred             HHHhcCChhHHHHHHh
Q 042924           97 YAVVSFRVEKLTNLLE  112 (355)
Q Consensus        97 ~A~~~~~~~~~~~Ll~  112 (355)
                      -|...+|.+++++|-+
T Consensus       579 dA~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  579 DAKHFKHKEVVKLLEE  594 (622)
T ss_pred             HhHhcCcHHHHHHHHH
Confidence            9999999999988866

>PF13606 Ank_3: Ankyrin repeat

Probab=98.65  E-value=2.7e-08  Score=56.69  Aligned_cols=28  Identities=43%  Similarity=0.552  Sum_probs=18.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHhhccCCCc
Q 042924           21 YGWTPIHYAAYYGNYGTVNLLLETDQSA   48 (355)
Q Consensus        21 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~   48 (355)
                      +|+||||+||+.|+.+++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4666666666666666666666666554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.65  E-value=3.2e-08  Score=58.02  Aligned_cols=33  Identities=36%  Similarity=0.370  Sum_probs=26.2

Q ss_pred             CCCcHHHHHHhcCCchHHHHHHhccCcccccccC
Q 042924          127 KGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNK  160 (355)
Q Consensus       127 ~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~  160 (355)
                      +|+||||+|+..++ .+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~-~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGH-PDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTC-HHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHH-HHHHHHHHHCcCCCCCCCC
Confidence            57888888888885 7888888888888887764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.62  E-value=1.3e-07  Score=88.03  Aligned_cols=119  Identities=21%  Similarity=0.209  Sum_probs=99.9

Q ss_pred             HHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc-cccccccCCchHHHHHHhcCCh
Q 042924           26 IHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE-CYELVDNRGWNFLHYAVVSFRV  104 (355)
Q Consensus        26 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~-~~~~~d~~g~t~Lh~A~~~~~~  104 (355)
                      +..|+..++.--++..-..|.+. ..++. +..+.||+|++.|+-|+|+++++++|. +.+..|.+|+|+||-|+..++.
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~-~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGP-DHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCc-chhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            45566666655555566667776 67776 889999999999999999999999875 4577899999999999999999


Q ss_pred             hHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhcc
Q 042924          105 EKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKT  151 (355)
Q Consensus       105 ~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~  151 (355)
                      .++.+|++    .|+.+...|..|.||-.-|-+.|+ .+...+|..+
T Consensus       948 ~vc~~lvd----agasl~ktd~kg~tp~eraqqa~d-~dlaayle~r  989 (1004)
T KOG0782|consen  948 AVCQLLVD----AGASLRKTDSKGKTPQERAQQAGD-PDLAAYLESR  989 (1004)
T ss_pred             HHHHHHHh----cchhheecccCCCChHHHHHhcCC-chHHHHHhhh
Confidence            99999999    889999999999999999999996 7777776544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.61  E-value=4.1e-08  Score=57.53  Aligned_cols=27  Identities=44%  Similarity=0.641  Sum_probs=15.3

Q ss_pred             CChHHHHHHHcCCHHHHHHhhccCCCc
Q 042924           22 GWTPIHYAAYYGNYGTVNLLLETDQSA   48 (355)
Q Consensus        22 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~   48 (355)
                      |+||||+|+..|+.+++++|+++|+++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            555555555555555555555555554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.60  E-value=4.9e-08  Score=55.63  Aligned_cols=29  Identities=31%  Similarity=0.339  Sum_probs=22.1

Q ss_pred             CCCcHHHHHHhcCCchHHHHHHhccCcccc
Q 042924          127 KGNTPLHVLAAIRPNEFDVDLVRKTQANYD  156 (355)
Q Consensus       127 ~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~  156 (355)
                      +|+||||+|++.|+ .+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~-~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGN-IEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCC-HHHHHHHHHcCCCCC
Confidence            47788888888774 777777777777776

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.48  E-value=3e-07  Score=85.34  Aligned_cols=89  Identities=25%  Similarity=0.238  Sum_probs=68.2

Q ss_pred             hHHHHHHhcCCHHHHHHHhh-hCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHh
Q 042924           59 TALHLAAGKGDARIVEAIIS-KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA  137 (355)
Q Consensus        59 tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~  137 (355)
                      .|+|++......+-+...+. .-...++.+|..|+||||+|+.-|+.+.++.|+.    .|+++..+|++|++|||.|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~----a~Adv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLS----AGADVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHh----cCCCccccccccccHHHHHHH
Confidence            45999887776665555433 3333457888999999999999999999999998    788899999999999999999


Q ss_pred             cCCchHHHHHHhcc
Q 042924          138 IRPNEFDVDLVRKT  151 (355)
Q Consensus       138 ~~~~~~~~~lL~~~  151 (355)
                      .|+...+..+|.++
T Consensus        98 ~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   98 TGNEQIITEVLRHL  111 (560)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99644444555443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.44  E-value=4.5e-07  Score=84.24  Aligned_cols=63  Identities=25%  Similarity=0.489  Sum_probs=29.7

Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhh
Q 042924           14 LIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS   78 (355)
Q Consensus        14 ~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~   78 (355)
                      .++.+|..|.||||+|+..|+.+.++.|+..+++. ..+++ +|++|||.|+..|+.+++..++.
T Consensus        47 ~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~-~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   47 VIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNN-EGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             eeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-ccccc-ccccHHHHHHHcCCHHHHHHHHH
Confidence            34444444444444444444444444444444443 33443 44444444444444444444443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.34  E-value=1.1e-06  Score=82.32  Aligned_cols=86  Identities=27%  Similarity=0.261  Sum_probs=46.2

Q ss_pred             HHHHHHcCCHHHHHHhhccCCCc--ccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCC
Q 042924           26 IHYAAYYGNYGTVNLLLETDQSA--SNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFR  103 (355)
Q Consensus        26 Lh~Aa~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  103 (355)
                      |..|+...++..+-+||.+|...  .+...+.+|+|+||+||+.|++.+.++|+-++.|+ ..+|.+|+|+|.||-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc
Confidence            34444455555555555554322  11111134556666666666666666666555555 5556666666666666666


Q ss_pred             hhHHHHHHh
Q 042924          104 VEKLTNLLE  112 (355)
Q Consensus       104 ~~~~~~Ll~  112 (355)
                      .+++..|++
T Consensus       707 qec~d~llq  715 (749)
T KOG0705|consen  707 QECIDVLLQ  715 (749)
T ss_pred             HHHHHHHHH
Confidence            666666655

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.25  E-value=9.5e-07  Score=88.70  Aligned_cols=79  Identities=27%  Similarity=0.162  Sum_probs=70.0

Q ss_pred             cCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHH
Q 042924           89 NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI  168 (355)
Q Consensus        89 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~  168 (355)
                      ..|.++||.|+..+..-.++.|++    .|+++|..|..|+||||.+...|+ .....+++++|++.++.+.+|++|+++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~----~ga~vn~~d~~g~~plh~~~~~g~-~~~~~~ll~~~a~~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQ----NGADVNALDSKGRTPLHHATASGH-TSIACLLLKRGADPNAFDPDGKLPLDI  728 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHh----cCCcchhhhccCCCcchhhhhhcc-cchhhhhccccccccccCccCcchhhH
Confidence            457899999999999999999999    778899999999999999999996 677788888999999999999999999


Q ss_pred             HhhC
Q 042924          169 FNYG  172 (355)
Q Consensus       169 a~~~  172 (355)
                      |...
T Consensus       729 a~~~  732 (785)
T KOG0521|consen  729 AMEA  732 (785)
T ss_pred             Hhhh
Confidence            9754

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.24  E-value=2.9e-06  Score=79.52  Aligned_cols=93  Identities=16%  Similarity=0.045  Sum_probs=73.3

Q ss_pred             HHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCC
Q 042924           95 LHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYP  174 (355)
Q Consensus        95 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~  174 (355)
                      |.-|+...+...+.+|+.+......+-...+.+|+|+||+||+.|+ ....++|+=+|+|+..+|.+|.|||-+|.... 
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gn-Vvl~QLLiWyg~dv~~rda~g~t~l~yar~a~-  705 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGN-VVLAQLLIWYGVDVMARDAHGRTALFYARQAG-  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcc-hhHHHHHHHhCccceecccCCchhhhhHhhcc-
Confidence            4556666677777788886643333333446788999999999995 88889999999999999999999999999776 


Q ss_pred             chHHHHHHHHHHcCCCC
Q 042924          175 ELKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       175 ~~~~~i~~~l~~~~~~~  191 (355)
                        .++....|..+|..+
T Consensus       706 --sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 --SQECIDVLLQYGCPD  720 (749)
T ss_pred             --cHHHHHHHHHcCCCc
Confidence              668888888876544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.20  E-value=3e-06  Score=68.75  Aligned_cols=70  Identities=26%  Similarity=0.437  Sum_probs=63.1

Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcc
Q 042924           13 NLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC   83 (355)
Q Consensus        13 ~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   83 (355)
                      .++|.+|..|||||+.|+..|+.+.+.+|+.+|...+...|. .|.+++.+|-+.|+.++++.|.+...+-
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~-ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDE-SSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCccccccccc-ccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            468999999999999999999999999999999555588887 9999999999999999999999875443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.11  E-value=3.9e-06  Score=84.08  Aligned_cols=118  Identities=16%  Similarity=0.103  Sum_probs=53.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHhhcc-CCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHH
Q 042924           20 QYGWTPIHYAAYYGNYGTVNLLLET-DQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYA   98 (355)
Q Consensus        20 ~~G~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   98 (355)
                      -.|++-+|.++..++...++.+++- +... ...|. +|...+|. |..++.+..-++.......++.+|.+||||||+|
T Consensus       572 ~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~-d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  572 FRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDR-DGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcc-cCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            3455555555555555555555553 2222 23332 44444444 3444444444444443333355555555555555


Q ss_pred             HhcCChhHHHHHHhcChhhhh--hhccCCCCCCcHHHHHHhcCC
Q 042924           99 VVSFRVEKLTNLLENNPLARS--LINEGDAKGNTPLHVLAAIRP  140 (355)
Q Consensus        99 ~~~~~~~~~~~Ll~~~~~~~~--~~n~~d~~G~T~Lh~A~~~~~  140 (355)
                      +..|+..++..|++.....+.  +.+..+..|-|+--+|-..|+
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~  692 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGH  692 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccc
Confidence            555555555555543222222  122223335555555555553

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.07  E-value=4.7e-06  Score=83.53  Aligned_cols=111  Identities=22%  Similarity=0.124  Sum_probs=88.0

Q ss_pred             CCCchHHHHHHhcCCHHHHHHHhhh-CCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHH
Q 042924           55 DRKMTALHLAAGKGDARIVEAIISK-NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLH  133 (355)
Q Consensus        55 ~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh  133 (355)
                      -.|++-+|+++..+..-.++.+++. +... ...|.+|...+|+++ .++.+...+++..   .|..++.+|.+|+||||
T Consensus       572 ~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca-~lg~ewA~ll~~~---~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  572 FRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCA-ALGYEWAFLPISA---DGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             CcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhh-hcCCceeEEEEee---cccccccccCCCCcccc
Confidence            3788999999999999999999996 4444 567889999999955 4455555555543   67789999999999999


Q ss_pred             HHHhcCCchHHHHHHhccCccc------ccccCCCCcHHHHHhh
Q 042924          134 VLAAIRPNEFDVDLVRKTQANY------DAVNKQIVSVRHIFNY  171 (355)
Q Consensus       134 ~A~~~~~~~~~~~lL~~~ga~~------~~~n~~g~Tpl~~a~~  171 (355)
                      +|+..|+ +.++..|.+.|++.      ...+-.|.|+-+++..
T Consensus       647 wAa~~G~-e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s  689 (975)
T KOG0520|consen  647 WAAFRGR-EKLVASLIELGADPGAVTDPSPETPGGKTAADLARA  689 (975)
T ss_pred             hHhhcCH-HHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc
Confidence            9999997 88888887766654      3344569999999983

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.04  E-value=5.2e-06  Score=83.50  Aligned_cols=87  Identities=26%  Similarity=0.294  Sum_probs=78.3

Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHH
Q 042924           56 RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL  135 (355)
Q Consensus        56 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A  135 (355)
                      .|.|+||.|+..|....++.|++.++++ +.+|..|+||+|.+...|+......+++    +|++.+..|.+|.+||++|
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~----~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLK----RGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcc----ccccccccCccCcchhhHH
Confidence            6799999999999999999999999996 9999999999999999999999998988    8899999999999999999


Q ss_pred             HhcCCchHHHHHH
Q 042924          136 AAIRPNEFDVDLV  148 (355)
Q Consensus       136 ~~~~~~~~~~~lL  148 (355)
                      ....+ ...+-++
T Consensus       730 ~~~~~-~d~~~l~  741 (785)
T KOG0521|consen  730 MEAAN-ADIVLLL  741 (785)
T ss_pred             hhhcc-ccHHHHH
Confidence            88754 4444443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.83  E-value=0.00013  Score=71.96  Aligned_cols=140  Identities=19%  Similarity=0.079  Sum_probs=103.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHhhccCCC---cccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHH
Q 042924           20 QYGWTPIHYAAYYGNYGTVNLLLETDQS---ASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLH   96 (355)
Q Consensus        20 ~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~---~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (355)
                      ..+.--...|+..|+...|+..++....   ..|..|. -|+++||.|..+.+.|++++|++.....        ..+|.
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~-lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL   93 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDP-LGRLALHIAIDNENLELQELLLDTSSEE--------GDALL   93 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccCh-HhhhceecccccccHHHHHHHhcCcccc--------chHHH
Confidence            3444556789999999999999985443   2255665 8999999999999999999999875443        35788


Q ss_pred             HHHhcCChhHHHHHHhcChhhhhhhccCC------CCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHH
Q 042924           97 YAVVSFRVEKLTNLLENNPLARSLINEGD------AKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIF  169 (355)
Q Consensus        97 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d------~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a  169 (355)
                      +|+..|..+.++.++......+..--..|      .-+-|||.+||..++ .+++++|+++|+.+...-.....+-+.-
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~Nn-yEil~~Ll~kg~~i~~PH~~~C~C~~C~  171 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNN-FEILQCLLTRGHCIPIPHDIRCECKTCK  171 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcc-hHHHHHHHHcCCCCCCCcccccCchHhh
Confidence            89999999999999986533211111222      346799999999995 9999999999998865544444443333

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.76  E-value=6.1e-05  Score=67.50  Aligned_cols=77  Identities=23%  Similarity=0.313  Sum_probs=63.4

Q ss_pred             ChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcC
Q 042924           23 WTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSF  102 (355)
Q Consensus        23 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  102 (355)
                      .--|.+||+.|..+.|+.|++.|.++ |..|. ...+||.+|+-.||.+++++|+++|+-+ ..-.-+|.-+ |+++.+.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~-fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC-~YgaLnd  112 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDR-FDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRC-HYGALND  112 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhc-ccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchh-hhhhhhH
Confidence            34588999999999999999998887 88898 7889999999999999999999999987 4333455554 5665554


Q ss_pred             C
Q 042924          103 R  103 (355)
Q Consensus       103 ~  103 (355)
                      +
T Consensus       113 ~  113 (516)
T KOG0511|consen  113 R  113 (516)
T ss_pred             H
Confidence            4

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.71  E-value=0.00012  Score=65.63  Aligned_cols=85  Identities=18%  Similarity=0.097  Sum_probs=58.2

Q ss_pred             chHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHh
Q 042924           58 MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA  137 (355)
Q Consensus        58 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~  137 (355)
                      .--|..||+.|..+.++.|++.|-.+ |.+|+....||.+|+..||.+++++|++    +|+.-+.-..+|. -.|+++.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLe----nGAiC~rdtf~G~-RC~YgaL  110 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLE----NGAICSRDTFDGD-RCHYGAL  110 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHH----cCCcccccccCcc-hhhhhhh
Confidence            44577888888888888888877777 7788888888888888888888888888    4544333333444 3445554


Q ss_pred             cCCchHHHHHHhcc
Q 042924          138 IRPNEFDVDLVRKT  151 (355)
Q Consensus       138 ~~~~~~~~~lL~~~  151 (355)
                      +.   .+.+.|+..
T Consensus       111 nd---~IR~mllsy  121 (516)
T KOG0511|consen  111 ND---RIRRMLLSY  121 (516)
T ss_pred             hH---HHHHHHHHH
Confidence            43   344455544

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.68  E-value=9.4e-05  Score=72.98  Aligned_cols=102  Identities=26%  Similarity=0.195  Sum_probs=83.5

Q ss_pred             HHHHHHHhccc---cccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhh
Q 042924            3 ALSKLLEIKKN---LIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK   79 (355)
Q Consensus         3 ~v~~lL~~~~~---~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~   79 (355)
                      .|+++|+....   ++|++|.-|+++||.|..+.|.++.++|++++...         ..+|.+|+..|.+++++.++..
T Consensus        40 ~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~---------gdALL~aI~~~~v~~VE~ll~~  110 (822)
T KOG3609|consen   40 LVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE---------GDALLLAIAVGSVPLVELLLVH  110 (822)
T ss_pred             HHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc---------chHHHHHHHHHHHHHHHHHHhc
Confidence            46777776654   68999999999999999999999999999975432         3789999999999999999986


Q ss_pred             CCccc---------cccccCCchHHHHHHhcCChhHHHHHHhc
Q 042924           80 NPECY---------ELVDNRGWNFLHYAVVSFRVEKLTNLLEN  113 (355)
Q Consensus        80 ~~~~~---------~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~  113 (355)
                      .....         ...-..+-||+.+|+..++.|+++.|++.
T Consensus       111 ~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k  153 (822)
T KOG3609|consen  111 FVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR  153 (822)
T ss_pred             ccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc
Confidence            43321         11224578999999999999999999994

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.48  E-value=0.0003  Score=57.41  Aligned_cols=64  Identities=22%  Similarity=0.188  Sum_probs=58.5

Q ss_pred             cccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcC
Q 042924           50 NIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENN  114 (355)
Q Consensus        50 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~  114 (355)
                      |.+|. .|+||+..|+..|..+.+.+|+..+...+...|..|.+++.+|-+.|..+++..|.+..
T Consensus         6 n~rD~-fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    6 NARDA-FGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             cchhh-hcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            88887 99999999999999999999999995444889999999999999999999999998853

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.90  E-value=0.0024  Score=59.57  Aligned_cols=54  Identities=15%  Similarity=-0.012  Sum_probs=44.2

Q ss_pred             CCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHH
Q 042924          125 DAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQ  181 (355)
Q Consensus       125 d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~  181 (355)
                      |.---|+||+|+..|. ..++..+++.|+|+..+|..|.||.+++.  +++++...+
T Consensus       427 ~~ltsT~LH~aa~qg~-~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~--nkdVk~~F~  480 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGA-RKCVKYFLEEGCDPSTKDGAGRTPYSLSA--NKDVKSIFI  480 (591)
T ss_pred             ccccchHHHHHHhcch-HHHHHHHHHhcCCchhcccCCCCcccccc--cHHHHHHHH
Confidence            3345799999999995 89999999999999999999999999987  334344433

>smart00248 ANK ankyrin repeats

Probab=96.79  E-value=0.0018  Score=35.19  Aligned_cols=25  Identities=48%  Similarity=0.708  Sum_probs=14.0

Q ss_pred             CChHHHHHHHcCCHHHHHHhhccCC
Q 042924           22 GWTPIHYAAYYGNYGTVNLLLETDQ   46 (355)
Q Consensus        22 G~tpLh~Aa~~g~~~~v~~Ll~~~~   46 (355)
                      |.||+|+|+..|+.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4555555555555555555555444

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.55  E-value=0.0038  Score=33.83  Aligned_cols=27  Identities=33%  Similarity=0.555  Sum_probs=21.2

Q ss_pred             CchHHHHHHhcCCHHHHHHHhhhCCcc
Q 042924           57 KMTALHLAAGKGDARIVEAIISKNPEC   83 (355)
Q Consensus        57 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   83 (355)
                      |.||+|+|+..|+.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            678888888888888888888776644

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.77  E-value=0.019  Score=53.79  Aligned_cols=64  Identities=19%  Similarity=0.131  Sum_probs=47.0

Q ss_pred             HHHHHHhhccCCCccccccc----CCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHH
Q 042924           35 YGTVNLLLETDQSASNIADK----DRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAV   99 (355)
Q Consensus        35 ~~~v~~Ll~~~~~~~~~~~~----~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~   99 (355)
                      ...+..|.+.+.+.+.....    .--.|+||+|+..|..+++.+||+.+.|+ ...|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc
Confidence            45566666665544211111    13468999999999999999999999888 788999999988877

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=88.72  E-value=3  Score=35.59  Aligned_cols=113  Identities=16%  Similarity=0.187  Sum_probs=67.5

Q ss_pred             HHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC----ccccccccCCchHHHHHHhc
Q 042924           26 IHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP----ECYELVDNRGWNFLHYAVVS  101 (355)
Q Consensus        26 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~----~~~~~~d~~g~t~Lh~A~~~  101 (355)
                      |--|+...|.+-+.-++..         +.+-.+++-+|..++..+++.+|+....    ++...  ..+.--+-++...
T Consensus       157 ledAV~AsN~~~i~~~Vtd---------KkdA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~LS~  225 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTD---------KKDAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLLSE  225 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcc---------hHHHHHHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHHhh
Confidence            4455555555555544432         2244678888888888888888887632    11111  1222233343332


Q ss_pred             --CChhHHHHHHhcChhhhhhhc---cCCCCCCcHHHHHHhcCCchHHHHHHhccCc
Q 042924          102 --FRVEKLTNLLENNPLARSLIN---EGDAKGNTPLHVLAAIRPNEFDVDLVRKTQA  153 (355)
Q Consensus       102 --~~~~~~~~Ll~~~~~~~~~~n---~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga  153 (355)
                        ....+++..++.+.   .++|   .+-+.|.|-|.-|.++++ .+.+.+|+++|+
T Consensus       226 h~a~~kvL~~Fi~~Gl---v~vN~~F~~~NSGdtMLDNA~Ky~~-~emi~~Llk~GA  278 (284)
T PF06128_consen  226 HSASYKVLEYFINRGL---VDVNKKFQKVNSGDTMLDNAMKYKN-SEMIAFLLKYGA  278 (284)
T ss_pred             cCCcHHHHHHHHhccc---cccchhhhccCCcchHHHhHHhcCc-HHHHHHHHHcCc
Confidence              24556777776433   2333   335678888888888884 788888888887

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]

Probab=87.15  E-value=5.5  Score=36.53  Aligned_cols=52  Identities=27%  Similarity=0.294  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHh-cc--CCcce--e-hhhHHHHHHHHHHHHHHHhhcc
Q 042924          303 VWFTIFSMGAMVIAFVTGTYAM-LV--PSLGL--A-IITCLIGLSFFLLVIWIVRLSI  354 (355)
Q Consensus       303 ~~~~~~s~~~~~~af~~~~~~v-~~--~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~  354 (355)
                      ..++.+|++.+..+|.+|+|=| ++  |-..|  . .+++++.+.+.++.+|+||++.
T Consensus       263 k~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~~~frrk~  320 (322)
T COG0598         263 KILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLYLYFRRKG  320 (322)
T ss_pred             HHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3556688888999999999953 22  22223  2 3445555566777788888764

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.35  E-value=1.8  Score=30.23  Aligned_cols=46  Identities=22%  Similarity=0.396  Sum_probs=25.4

Q ss_pred             HHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhh
Q 042924           25 PIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK   79 (355)
Q Consensus        25 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~   79 (355)
                      -+..|+..|+.|+++.+++.+. +       + ...+..|+...+-+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~-~-------~-~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNK-P-------D-NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhc-c-------H-HHHHHHHHHHhhHHHHHHHHHh
Confidence            3556666666666666664331 1       1 2445666666666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)

Probab=82.93  E-value=13  Score=33.83  Aligned_cols=51  Identities=16%  Similarity=0.099  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhHh----ccCCcce-ehhh-HHHHHHHHHHHHHHHhhcc
Q 042924          304 WFTIFSMGAMVIAFVTGTYAM----LVPSLGL-AIIT-CLIGLSFFLLVIWIVRLSI  354 (355)
Q Consensus       304 ~~~~~s~~~~~~af~~~~~~v----~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~  354 (355)
                      .++.+|++.+..+|.+|+|=+    +|...|. .+.+ .++.+++.+..+|+||++.
T Consensus       260 ~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~  316 (318)
T TIGR00383       260 ILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKG  316 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            566788899999999999963    4443332 3332 2333345556677888753

The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.

>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.26  E-value=4.8  Score=28.35  Aligned_cols=50  Identities=28%  Similarity=0.133  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhccC
Q 042924          262 AFIVADSIAMVFSLSAVFTHFLMSFIIEETKDFNEDLLLASVWFTIFSMGAMVIAFVTGTYAMLVP  327 (355)
Q Consensus       262 ~F~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~af~~~~~~v~~~  327 (355)
                      +++++|.+||..|++.+.+.++-..-+.-.|                +..+|.+.|.+|.-..+..
T Consensus        15 awi~f~waafg~s~~m~~~gi~~lPVD~w~K----------------Gy~~MG~lfltgSt~tL~K   64 (95)
T COG4298          15 AWIMFNWAAFGASYFMLGLGIWLLPVDLWTK----------------GYWAMGILFLTGSTVTLVK   64 (95)
T ss_pred             hhHhHHHHHHHHHHHHHHHHhheechHHHHH----------------HHHHHHHHHHhcchhhhhH
Confidence            5688899999999888877555333332111                2345777888887765543

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=81.39  E-value=3.5  Score=28.79  Aligned_cols=48  Identities=31%  Similarity=0.351  Sum_probs=39.5

Q ss_pred             chHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhc
Q 042924           58 MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN  113 (355)
Q Consensus        58 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~  113 (355)
                      ...+..|...|+.|+++.+++.+ .+    +   ...+..|+...+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KP----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-cc----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            45688999999999999999754 22    1   4579999999999999999984

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	355
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-07
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-07
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-05
1uoh_A	226	Human Gankyrin Length = 226		3e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		4e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		5e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		6e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		7e-05
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-04
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		7e-04

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
           +D  GWTP+H AAY+G+   V +LL+     +  AD    +T LHLAA +G   +VE ++
Sbjct: 43  SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN--ADDSLGVTPLHLAADRGHLEVVEVLL 100
Query: 78  SKNPECYELVDNRGWNFLHYA 98
            KN       D+ G+  LH A
Sbjct: 101 -KNGADVNANDHNGFTPLHLA 120

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDR-KMTALHLAAGKGDARIVEAII 77
           D  GWTP+H AA++G+   V +LL   ++ +++  KD   +T LHLAA +G   IVE ++
Sbjct: 44  DFTGWTPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL 100
Query: 78  SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
            KN       D+ G+  LH A     +E +  LL+N
Sbjct: 101 -KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 20/155 (12%)
Query: 20  QYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK 79
           + G+TP+H AA YG      LLLE D +  N A K+  +T LH+A    +  IV+ ++ +
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPR 201
Query: 80  NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDA------KGNTPLH 133
               +    N G+  LH A    +VE          +ARSL+  G +      +G TPLH
Sbjct: 202 GGSPHSPAWN-GYTPLHIAAKQNQVE----------VARSLLQYGGSANAESVQGVTPLH 250
Query: 134 VLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI 168
            LAA   +   V L+   QAN +  NK  ++  H+
Sbjct: 251 -LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 284

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
           +D  G TP+HYAA  G+   V LL+ +  +  N  D D + T LH AA +G   IV+ +I
Sbjct: 33  SDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGR-TPLHYAAKEGHKEIVKLLI 90
Query: 78  SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
           SK  +     D+ G   LHYA      E +  L+       + +N  D+ G TPL  LA 
Sbjct: 91  SKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISKG----ADVNTSDSDGRTPLD-LAR 144
Query: 138 IRPNEFDVDLVRK 150
              NE  V L+ K
Sbjct: 145 EHGNEEIVKLLEK 157

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP 81
           G TP+H AA  G+   V LLLE      N  DK+ + T LHLAA  G   +V+ ++    
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 59
Query: 82  ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLA 136
           +     D  G   LH A  +  +E +  LLE    A + +N  D  G TPLH+ A
Sbjct: 60  DVNA-KDKNGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAA 109

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
           D+ G+TP+H AA  G+   V +LL+      N  DKD   T LHLAA +G   IVE ++ 
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKD-GYTPLHLAAREGHLEIVEVLLK 89
Query: 79  KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
              +     D  G+  LH A     +E +  LL+    A + +N  D  G TP  +  AI
Sbjct: 90  AGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK----AGADVNAQDKFGKTPFDL--AI 142
Query: 139 RPNEFDV 145
           R    D+
Sbjct: 143 REGHEDI 149

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
           +D  G TP+HYAA  G+   V LLL +  +  N  D D + T LH AA  G   IV+ ++
Sbjct: 33  SDSDGRTPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGR-TPLHYAAENGHKEIVKLLL 90
Query: 78  SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
           SK  +     D+ G   LHYA  +   E +  LL       +  N  D+ G TPL  LA 
Sbjct: 91  SKGADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKG----ADPNTSDSDGRTPLD-LAR 144
Query: 138 IRPNEFDVDLVRK 150
              NE  V L+ K
Sbjct: 145 EHGNEEIVKLLEK 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEA 75
           TD  G TP+H AA  G    V +LL+   D +AS+ A     +T LHLAA  G   IVE 
Sbjct: 35  TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA----GITPLHLAAYDGHLEIVEV 90
Query: 76  IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHV 134
           ++    +     D  GW  LH A +S ++E +  LL++     + +N  DA G T   +
Sbjct: 91  LLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLKHG----ADVNAQDALGLTAFDI 144

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
           D+ G+TP+H AA  G+   V +LL+      N  DKD   T LHLAA +G   IVE ++ 
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKD-GYTPLHLAAREGHLEIVEVLLK 89
Query: 79  KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTP 131
              +     D  G+  LH A     +E +  LL+    A + +N  D  G TP
Sbjct: 90  AGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK----AGADVNAQDKFGKTP 137

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
           +D  G TP+H+AA  G+   V LL+ +  +  N  D D + T LH AA  G   +V+ +I
Sbjct: 33  SDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGR-TPLHHAAENGHKEVVKLLI 90
Query: 78  SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
           SK  +     D+ G   LH+A  +   E +  L+       + +N  D+ G TPL  LA 
Sbjct: 91  SKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKG----ADVNTSDSDGRTPLD-LAR 144
Query: 138 IRPNEFDVDLVRK 150
              NE  V L+ K
Sbjct: 145 EHGNEEVVKLLEK 157

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
           +D  G TP+H AA  G+   V LLL +  +  N  D D K T LHLAA  G   +V+ ++
Sbjct: 33  SDSDGKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGK-TPLHLAAENGHKEVVKLLL 90
Query: 78  SK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL 135
           S+  +P      D+ G   LH A  +   E +  LL       +  N  D+ G TPL  L
Sbjct: 91  SQGADPNAK---DSDGKTPLHLAAENGHKEVVKLLLSQG----ADPNTSDSDGRTPLD-L 142
Query: 136 AAIRPNEFDVDLVRK 150
           A    NE  V L+ K
Sbjct: 143 AREHGNEEVVKLLEK 157

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVEAI 76
           TDQ   T +H+A   G+   V  LL   Q    + DKD    + LH+AA  G   IV+A+
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL 92
Query: 77  ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLAR-----SLINEGDAKGN 129
           + K  +    V+  G   LHYA    R E    LLE   NP A+     + ++   AKGN
Sbjct: 93  LGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 151
Query: 130 TPL-HVL 135
             + H+L
Sbjct: 152 LKMIHIL 158

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVEAI 76
           TDQ   T +H+A   G+   V  LL   Q    + DKD    + LH+AA  G   IV+A+
Sbjct: 37  TDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL 93
Query: 77  ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLAR-----SLINEGDAKGN 129
           + K  +    V+  G   LHYA    R E    LLE   NP A+     + ++   AKGN
Sbjct: 94  LGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 152
Query: 130 TPL-HVL 135
             + H+L
Sbjct: 153 LKMIHIL 159

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
           D  GWTP H A   GN   V  L +           ++ +T LHLA GK    + + +I 
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI- 127
Query: 79  KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
           +N     + D      LH A  S    KL  LL    L +S +N  D +G TPL    A 
Sbjct: 128 ENGASVRIKDKFNQIPLHRA-ASVGSLKLIELLCG--LGKSAVNWQDKQGWTPLFHALAE 184
Query: 139 RPNEFDVDLVRKTQANYDAVNKQ 161
              +  V LV K  A YD V+ +
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNK 207

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
           D  GWTP H A   GN   V  L +           ++ +T LHLA GK    + + +I 
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI- 127
Query: 79  KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
           +N     + D      LH A  S    KL  LL    L +S +N  D +G TPL    A 
Sbjct: 128 ENGASVRIKDKFNQIPLHRA-ASVGSLKLIELLCG--LGKSAVNWQDKQGWTPLFHALAE 184
Query: 139 RPNEFDVDLVRKTQANYDAVNKQ 161
              +  V LV K  A YD V+ +
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNK 207

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
           D  GWTP H A   GN   V  L +           ++ +T LHLA GK    + + +I 
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI- 127
Query: 79  KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
           +N     + D      LH A  S    KL  LL    L +S +N  D +G TPL    A 
Sbjct: 128 ENGASVRIKDKFNQIPLHRA-ASVGSLKLIELLCG--LGKSAVNWQDKQGWTPLFHALAE 184
Query: 139 RPNEFDVDLVRKTQANYDAVNKQ 161
              +  V LV K  A YD V+ +
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNK 207

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
           T Q G +P+H AA +G    + LLL+   +A   A    +   LHLA  +G  ++V+ ++
Sbjct: 82  TSQDGSSPLHVAALHGRADLIPLLLKHGANAG--ARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 78  SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
             N +  +  D  G   L YA      E +  LL++     + IN  + KGNT LH  A 
Sbjct: 140 DSNAKPNK-KDLSGNTPLIYACSGGHHELVALLLQHG----ASINASNNKGNTALHE-AV 193
Query: 138 IRPNEFDVDLVRKTQANYDAVNKQ 161
           I  + F V+L+    A+   +NK+
Sbjct: 194 IEKHVFVVELLLLHGASVQVLNKR 217

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
          TD  G +P+H AA YG++ T  +LL    S       DR  T LH+AA +G A IVE ++
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIVEVLL 87
Query: 78 SKNPE 82
              +
Sbjct: 88 KHGAD 92

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVEAI 76
           TDQ   T +H+A   G+   V  LL   Q    + DKD    + LH+AA  G   IV+A+
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL 92
Query: 77  ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLAR-----SLINEGDAKGN 129
           + K       V+  G   LHYA    R E    LLE   NP A+     + ++   AKGN
Sbjct: 93  LVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151
Query: 130 TPL-HVL 135
             + H+L
Sbjct: 152 LKMVHIL 158

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVEAI 76
           TDQ   T +H+A   G+   V  LL   Q    + DKD    + LH+AA  G   IV+A+
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL 92
Query: 77  ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLAR-----SLINEGDAKGN 129
           + K       V+  G   LHYA    R E    LLE   NP A+     + ++   AKGN
Sbjct: 93  LVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151
Query: 130 TPL-HVL 135
             + H+L
Sbjct: 152 LKMVHIL 158

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLET--DQSASNIADKDRKMTALHLAAGKGDARIVEA 75
           TD  G+TP+H AA  G+   V +LL+   D +AS++      +T LHLAA  G   IVE 
Sbjct: 43  TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT----GITPLHLAAATGHLEIVEV 98
Query: 76  IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
           ++    +     DN G   LH A     +E +  LL++
Sbjct: 99  LLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
            D  GWTP+H AAY+G+   V +LL+     +  A      T LHLAA  G   IVE ++
Sbjct: 43  ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN--AYDTLGSTPLHLAAHFGHLEIVEVLL 100
Query: 78  SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
            KN       D+ G   LH A     +E +  LL+
Sbjct: 101 -KNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
           D+ G+TP+H AA  G+   V +LL+      N  DKD   T LHLAA +G   IVE ++ 
Sbjct: 44  DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKD-GYTPLHLAAREGHLEIVEVLLK 101
Query: 79  KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
              +     D  G+  LH A     +E +  LL+
Sbjct: 102 AGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 134

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
           D  GWTP+H AA+ G+   V +LL+     + +      MT L LAA  G   IVE ++ 
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV--DHAGMTPLRLAALFGHLEIVEVLL- 100
Query: 79  KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
           KN       D  G   LH A +   +E +  LL+N
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 59  TALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLAR 118
           T LHLAA  G   IVE ++ KN      VD+ G   L  A +   +E +  LL+N     
Sbjct: 49  TPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG---- 103
Query: 119 SLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI-FNYGYPELK 177
           + +N  D +G+TPLH+ A     E  V+++ K  A+ +A +K   +   I  + G  +L 
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEI-VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 178 EEIQKLS 184
           E +QKL+
Sbjct: 163 EILQKLN 169

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
           +D +G+TP+H AAY+G+   V +LL+      N  D D  MT LHLAA  G   IVE ++
Sbjct: 76  SDVFGYTPLHLAAYWGHLEIVEVLLKNGADV-NAMDSD-GMTPLHLAAKWGYLEIVEVLL 133
Query: 78  SKNPEC 83
               + 
Sbjct: 134 KHGADV 139

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 9/157 (5%)
Query: 29  AAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVD 88
           AA  G    V +L+     A   A  D+  T LHLAA  G   IVE ++    +     D
Sbjct: 21  AARAGQDDEVRILMAN--GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARD 77
Query: 89  NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLV 148
             GW  LH A  +  +E +  LL+      + +N  DA G TPLH LAA R +   V+++
Sbjct: 78  TDGWTPLHLAADNGHLEIVEVLLKYG----ADVNAQDAYGLTPLH-LAADRGHLEIVEVL 132
Query: 149 RKTQANYDAVNKQIVSVRHI-FNYGYPELKEEIQKLS 184
            K  A+ +A +K   +   I  + G  +L E +QKL+
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEA 75
           TD  G TP+H AA YG+   V +LL+   D +A +I       T LHLAA  G   IVE 
Sbjct: 43  TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS----TPLHLAALIGHLEIVEV 98
Query: 76  IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
           ++    +    VD  G   LH A +   +E +  LL++
Sbjct: 99  LLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKH 135

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEA 75
           TD  G TP+H AA YG+   V +LL+   D +A +I       T LHLAA  G   IVE 
Sbjct: 43  TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS----TPLHLAALIGHLEIVEV 98
Query: 76  IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
           ++    +    VD  G   LH A +   +E +  LL++
Sbjct: 99  LLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKH 135

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEA 75
           +D+ GWTP+H AAY G+   V +LL+   D +A +     +  T LHLAA  G   IVE 
Sbjct: 76  SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY----QGYTPLHLAAEDGHLEIVEV 131
Query: 76  IIS 78
           ++ 
Sbjct: 132 LLK 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-12
2rfa_A	232	Transient receptor potential cation channel subfa	2e-18
2rfa_A	232	Transient receptor potential cation channel subfa	1e-15
2rfa_A	232	Transient receptor potential cation channel subfa	6e-15
2rfa_A	232	Transient receptor potential cation channel subfa	1e-11
2rfa_A	232	Transient receptor potential cation channel subfa	1e-09
2rfa_A	232	Transient receptor potential cation channel subfa	4e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-17
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-10
2etb_A	256	Transient receptor potential cation channel subfam	4e-15
2etb_A	256	Transient receptor potential cation channel subfam	1e-14
2etb_A	256	Transient receptor potential cation channel subfam	4e-09
2etb_A	256	Transient receptor potential cation channel subfam	2e-07
2etb_A	256	Transient receptor potential cation channel subfam	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	7e-15
2pnn_A	273	Transient receptor potential cation channel subfa	3e-14
2pnn_A	273	Transient receptor potential cation channel subfa	4e-14
2pnn_A	273	Transient receptor potential cation channel subfa	2e-11
2pnn_A	273	Transient receptor potential cation channel subfa	7e-09
2pnn_A	273	Transient receptor potential cation channel subfa	2e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 91.0 bits (227), Expect = 1e-21
 Identities = 43/151 (28%), Positives = 54/151 (35%), Gaps = 10/151 (6%)

Query: 13  NLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDAR 71
           NL    D  GWTP H A   GN   V  L +       N        T LHLA GK    
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKWFE 121

Query: 72  IVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTP 131
           + + +I          D      LH A     ++ +  L       +S +N  D +G TP
Sbjct: 122 VSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLCGLG---KSAVNWQDKQGWTP 177

Query: 132 LHVLAAIRPNEFDV--DLVRKTQANYDAVNK 160
           L   A       D    LV K  A YD V+ 
Sbjct: 178 LF-HALAE-GHGDAAVLLVEKYGAEYDLVDN 206

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 84.8 bits (211), Expect = 2e-19
 Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 7/121 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIV 73
           + +    G T +H A     +     L+  +  AS  I DK  +   LH AA  G  +++
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLI--ENGASVRIKDKFNQ-IPLHRAASVGSLKLI 156

Query: 74  EAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLH 133
           E +           D +GW  L +A+     +    LL     A    +  D KG     
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD-AAVLLVEKYGAE--YDLVDNKGAKAED 213

Query: 134 V 134
           V
Sbjct: 214 V 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 79.8 bits (198), Expect = 1e-17
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK-- 79
              P+H A     +  V  LL +  S     D+D +   LH +       I   ++SK  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKME 60

Query: 80  NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
           N    +  D+ GW   H A     +E + +L +        +N+   +G T LH LA 
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD--LNKITNQGVTCLH-LAV 115

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 78.6 bits (195), Expect = 3e-17
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 17/139 (12%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK----MTAL 61
           +LL  K +L+ + DQ G  P+H++  +  +   + LL   +   N+   D       T  
Sbjct: 20  ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKME-NVNLDDYPDDSGWTPF 76

Query: 62  HLAAGKGDARIVEAIISKNPECY-ELVDNRGWNFLHYAVVSFRVE--KLTNLLENNPLAR 118
           H+A   G+  +V+++  +  +     + N+G   LH AV     E  +   L+EN     
Sbjct: 77  HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF--LIENGA--- 131

Query: 119 SLINEGDAKGNTPLHVLAA 137
             +   D     PLH  AA
Sbjct: 132 -SVRIKDKFNQIPLHR-AA 148

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 76.3 bits (189), Expect = 2e-16
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           A   K  E+ + LI+        D++   P+H AA  G+   + LL    +SA N  DK 
Sbjct: 114 AVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173

Query: 56  RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAV 99
              T L  A  +G       ++ K    Y+LVDN+G      A+
Sbjct: 174 GW-TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 89.0 bits (222), Expect = 8e-21
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 10/131 (7%)

Query: 14  LIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS---NIADKDRKMTALHLAAGKGDA 70
           +    D+ G TP+H A   GN   V+ L+   Q      +I +  R+ T LHLA      
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLP 59

Query: 71  RIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKG 128
            +V  +++   +P     +D  G    H A        L  LL++       +   +  G
Sbjct: 60  SVVRLLVTAGASP---MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 129 NTPLHVLAAIR 139
            T LH +A   
Sbjct: 117 LTALH-VAVNT 126

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 82.5 bits (205), Expect = 2e-18
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 18/136 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIV 73
           ++  +  G T +H A       TV LLLE  + A  +  D     + L  A       +V
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLE--RGADIDAVDIKSGRSPLIHAVENNSLSMV 166

Query: 74  EAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKGN 129
           + ++    N          G + LH A     +  +  L+ +  +       +  +   +
Sbjct: 167 QLLLQHGANVNA---QMYSGSSALHSASGRGLLPLVRTLVRSGAD------SSLKNCHND 217

Query: 130 TPLHVLAAIRPNEFDV 145
           TPL V  A      D+
Sbjct: 218 TPLMV--ARSRRVIDI 231

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 82.1 bits (204), Expect = 2e-18
 Identities = 30/148 (20%), Positives = 64/148 (43%), Gaps = 17/148 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           A ++ L  + + L+         D++G T  H A  + +   +  LL+   +A    D +
Sbjct: 53  AVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD--SAAPGTLDLE 110

Query: 56  RK----MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLL 111
            +    +TALH+A        V+ ++ +  +   +    G + L +AV +  +  +  LL
Sbjct: 111 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170

Query: 112 ENNPLARSLINEGDAKGNTPLHVLAAIR 139
           ++     + +N     G++ LH  A+ R
Sbjct: 171 QHG----ANVNAQMYSGSSALHS-ASGR 193

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 63.6 bits (156), Expect = 6e-12
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           A  +  L + + L++           G + +H A+  G    V  L+     A  ++ + 
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR--SGADSSLKNC 214

Query: 55  DRKMTALHLAAGKGDARIVEAIISK 79
               T L +A  +    I+    ++
Sbjct: 215 HND-TPLMVARSRRVIDILRGKATR 238

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 87.1 bits (217), Expect = 1e-20
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 14/134 (10%)

Query: 7   LLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAA 65
            L    NL+ + D+ G+TP+ +A+ +G   TV  LLE    A  +I  K+R  +AL LA+
Sbjct: 21  HLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE--WGADPHILAKER-ESALSLAS 77

Query: 66  GKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINE 123
             G   IV  ++ +  +   Y   D  G   L YAV    V+ +  LL     A   +  
Sbjct: 78  TGGYTDIVGLLLERDVDINIY---DWNGGTPLLYAVRGNHVKCVEALLARG--AD--LTT 130

Query: 124 GDAKGNTPLHVLAA 137
               G TP+  LA 
Sbjct: 131 EADSGYTPMD-LAV 143

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 75.5 bits (187), Expect = 1e-16
 Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 15/120 (12%)

Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK-- 79
               IH  A  G    +   L    +  N  D+    T L  A+  G+   V  ++    
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDER-GFTPLIWASAFGEIETVRFLLEWGA 60

Query: 80  NPECYELVDNRGWNFLHYAVVSFRVE--KLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
           +P     +     + L  A      +   L  LLE +      IN  D  G TPL   A 
Sbjct: 61  DPHI---LAKERESALSLASTGGYTDIVGL--LLERD--VD--INIYDWNGGTPLL-YAV 110

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 72.1 bits (178), Expect = 3e-15
 Identities = 22/133 (16%), Positives = 52/133 (39%), Gaps = 19/133 (14%)

Query: 8   LEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTA 60
           +E  + L++         +   + +  A+  G    V LLL  ++    NI D +   T 
Sbjct: 49  IETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL--ERDVDINIYDWNG-GTP 105

Query: 61  LHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVV--SFRVEKLTNLLENNPLAR 118
           L  A      + VEA++++  +      + G+  +  AV     +V+++  +  +    +
Sbjct: 106 LLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQV--IENHI--LK 160

Query: 119 SLINEGDAKGNTP 131
             + + +     P
Sbjct: 161 --LFQSNLVPADP 171

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 88.0 bits (219), Expect = 2e-20
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 12/130 (9%)

Query: 16  KETDQYGWTPIHYAAYYGNYGTVNLLLET--DQSAS-NIADKDRKMTALHLAAGKGDARI 72
           ++  + G + +H A  +        ++       A  N  +  ++ T LHLA       I
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEI 60

Query: 73  VEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKG 128
            EA++    +P   EL D RG   LH A     +  +  L ++   P   S++   +  G
Sbjct: 61  AEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117

Query: 129 NTPLHVLAAI 138
           +T LH LA+I
Sbjct: 118 HTCLH-LASI 126

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 83.4 bits (207), Expect = 8e-19
 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 19/132 (14%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIV 73
           +   +    TP+H A           LL         + D     T LHLA  +G    V
Sbjct: 38  LNFQNNLQQTPLHLAVITNQPEIAEALLG--AGCDPELRDFRGN-TPLHLACEQGCLASV 94

Query: 74  EAIISK--NPECYELV---DNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDA 126
             +      P  + ++   +  G   LH A +   +  +  L+    +      +N  + 
Sbjct: 95  GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD------VNAQEP 148

Query: 127 K-GNTPLHVLAA 137
             G T LH LA 
Sbjct: 149 CNGRTALH-LAV 159

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 79.9 bits (198), Expect = 2e-17
 Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 21/151 (13%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLE-----TDQSASN 50
           A ++   EI + L+         D  G TP+H A   G   +V +L +        S   
Sbjct: 52  AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111

Query: 51  IADKDRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLT 108
             + +   T LHLA+  G   IVE ++S   +    E  +  G   LH AV     + ++
Sbjct: 112 ATNYNGH-TCLHLASIHGYLGIVELLVSLGADVNAQEPCN--GRTALHLAVDLQNPDLVS 168

Query: 109 NLLENNPLARSLINEGDAKGNTPLHVLAAIR 139
            LL+      + +N    +G +P   L   R
Sbjct: 169 LLLKCG----ADVNRVTYQGYSPYQ-LTWGR 194

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 69.9 bits (172), Expect = 4e-14
 Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 24/131 (18%)

Query: 12  KNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDA 70
            +++K T+  G T +H A+ +G  G V LL+     A  N  +     TALHLA    + 
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVS--LGADVNAQEPCNGRTALHLAVDLQNP 164

Query: 71  RIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLI------N 122
            +V  ++    +      V  +G++                      + + L        
Sbjct: 165 DLVSLLLKCGADVNR---VTYQGYSPYQLTWGRPSTR----------IQQQLGQLTLENL 211

Query: 123 EGDAKGNTPLH 133
           +   +      
Sbjct: 212 QMLPESEDEES 222

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 88.8 bits (221), Expect = 2e-20
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 19/145 (13%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           +  +   E +             +  G TP+H A  + +   V LL +    A  N  + 
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD--AGADLNKPEP 189

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
               T LHLA     A ++E ++    +P         G   L  A++         L  
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTA---RMYGGRTPLGSALLRPNPILARLLRA 246

Query: 113 NNPLARSLINEGDAKGNTPLHVLAA 137
           +   A     E      +P    + 
Sbjct: 247 HG--AP--EPEDGGDKLSPCS-SSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 78.7 bits (195), Expect = 8e-17
 Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 20/142 (14%)

Query: 11  KKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGD 69
               +   +  G T +H AA  G   TV  L      A   +A++    TALHLA     
Sbjct: 34  GHEYLDLQNDLGQTALHLAAILGEASTVEKLYA--AGAGVLVAERGGH-TALHLACRVRA 90

Query: 70  ARIVEAIISKN------------PECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLA 117
                 ++                +  +   +                +     E+  L 
Sbjct: 91  HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ 150

Query: 118 RSLINEGDAKGNTPLHVLAAIR 139
              +   +  G+TPLH +A I 
Sbjct: 151 ---LEAENYDGHTPLH-VAVIH 168

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 77.2 bits (191), Expect = 2e-16
 Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 13/156 (8%)

Query: 17  ETDQYGWTPIHYAAYYGNYGTVNLLLET--DQSASNIADKDRKMTALHLAAGKGDARIVE 74
              + G T +H A  + +   ++ LL         ++ +   + TALHLAA  G+A  VE
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEASTVE 62

Query: 75  AIISKNPECYELVDNRGWNFLHYAVVSFRVE--KL-------TNLLENNPLARSLINEGD 125
            + +         +  G   LH A          +            ++       +   
Sbjct: 63  KLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 126 AKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ 161
              + P  V +   P   +       +   +A N  
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 68.3 bits (168), Expect = 3e-13
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 29/157 (18%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLE------------ 43
           AA+       + L          ++ G T +H A     +    +LL+            
Sbjct: 52  AAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

Query: 44  TDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFR 103
               + +         A   +    +            +  E  +  G   LH AV+   
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKD 170

Query: 104 VE--KLTNLLENNPLARSLINEGDAK-GNTPLHVLAA 137
            E  +L  L +      + +N+ +   G TPLH LA 
Sbjct: 171 AEMVRL--LRDAG----ADLNKPEPTCGRTPLH-LAV 200

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 10/80 (12%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           A  ++   + + L+K           G TP+  A    N     LL      A       
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA--HGAPEPEDGG 256

Query: 55  DRKMTALHLAAGKGDARIVE 74
           D+  +    +    D+   +
Sbjct: 257 DKL-SPCSSSGSDSDSDNRD 275

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 6/50 (12%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETD 45
           A L     + + L        E      +P   +    +    +   E D
Sbjct: 232 ALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 87.1 bits (217), Expect = 4e-20
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 13/142 (9%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           AA     +  K L++        D  G TP+H A      G   +L+    +  +    D
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 56  RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNP 115
              T L LAA      ++E +I+ + +    VD+ G + LH+A     V+    LL+N  
Sbjct: 124 GT-TPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLKNG- 180

Query: 116 LARSLINEGDAKGNTPLHVLAA 137
              +  +  + +  TPL  LAA
Sbjct: 181 ---ANKDMQNNREETPLF-LAA 198

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 82.5 bits (205), Expect = 2e-18
 Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 29/152 (19%)

Query: 2   AALSKLLEIKKNLIK-------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIAD 53
           A  +    + + LI+            G TP+  AA     G +  L+     A  N  D
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN--SHADVNAVD 154

Query: 54  KDRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVE--KLTN 109
              K +ALH AA   +      ++    N +     +NR    L  A      E  K+  
Sbjct: 155 DLGK-SALHWAAAVNNVDAAVVLLKNGANKDM---QNNREETPLFLAAREGSYETAKV-- 208

Query: 110 LLEN--NPLARSLINEGDAKGNTPLHVLAAIR 139
           LL++  N       +  D     P  + A  R
Sbjct: 209 LLDHFAN------RDITDHMDRLPRDI-AQER 233

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 82.1 bits (204), Expect = 3e-18
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 13/136 (9%)

Query: 7   LLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAA 65
            +    +L  +TD+ G T +H AA Y        LL  + SA  NI D   + T LH A 
Sbjct: 42  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL--EASADANIQDNMGR-TPLHAAV 98

Query: 66  GKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINE 123
                 + + +I       +   + G   L  A        L +L+ +  +      +N 
Sbjct: 99  SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------VNA 152

Query: 124 GDAKGNTPLHVLAAIR 139
            D  G + LH  AA  
Sbjct: 153 VDDLGKSALH-WAAAV 167

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.9 bits (180), Expect = 5e-15
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 23/138 (16%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGT-------------VNLLLETDQSASNIADKDRKMTAL 61
           +      G+TP+  A+  G                 ++  +    S  N  D+  + TAL
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE-TAL 61

Query: 62  HLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARS 119
           HLAA    +   + ++    +       DN G   LH AV +        L+ N     +
Sbjct: 62  HLAARYSRSDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVFQILIRN---RAT 115

Query: 120 LINEGDAKGNTPLHVLAA 137
            ++     G TPL  LAA
Sbjct: 116 DLDARMHDGTTPLI-LAA 132

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 63.6 bits (156), Expect = 7e-12
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA    ++    L+K        +    TP+  AA  G+Y T  +LL+    A+ +I D 
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD--HFANRDITDH 221

Query: 55  DRKMTALHLAAGKGDARIVEAIISKN 80
             +     +A  +    IV  +  ++
Sbjct: 222 MDR-LPRDIAQERMHHDIVRLLDLEH 246

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 85.1 bits (212), Expect = 5e-20
 Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 20/145 (13%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
            A    +      I+       TD+ G+TP+ +AA +G    V  LL+    A   +  K
Sbjct: 10  LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQLLGK 67

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
            R  +AL LA  KG   IV+ ++    +   Y   D  G   L YAV    V+ +  LLE
Sbjct: 68  GR-ESALSLACSKGYTDIVKMLLDCGVDVNEY---DWNGGTPLLYAVHGNHVKCVKMLLE 123

Query: 113 NNPLARSLINEGDAKGNTPLHVLAA 137
           +     +        G   +  LA 
Sbjct: 124 SG----ADPTIETDSGYNSMD-LAV 143

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 74.3 bits (184), Expect = 3e-16
 Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEAIISK- 79
               +H  A  G    +   +E  Q    N  D++   T L  AA  G   +VE ++   
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIE--QENVINHTDEEGF-TPLMWAAAHGQIAVVEFLLQNG 59

Query: 80  -NPECYELVDNRGWNFLHYAVVSFRVE--KLTNLLENNPLARSLINEGDAKGNTPLHVLA 136
            +P+    +     + L  A      +  K+  LL+        +NE D  G TPL   A
Sbjct: 60  ADPQL---LGKGRESALSLACSKGYTDIVKM--LLDCG--VD--VNEYDWNGGTPLL-YA 109

Query: 137 A 137
            
Sbjct: 110 V 110

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 65.1 bits (160), Expect = 6e-13
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           A      +I K L+       E D  G TP+ YA +  +   V +LLE    A   I   
Sbjct: 76  ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE--SGADPTIETD 133

Query: 55  DRKMTALHLAAGKGDARIVEAIISK 79
                ++ LA   G   + + I S 
Sbjct: 134 SGY-NSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 7/62 (11%), Positives = 18/62 (29%), Gaps = 12/62 (19%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           A     ++  K L++           G+  +  A   G      ++       S++    
Sbjct: 109 AVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE------SHLLKLL 162

Query: 56  RK 57
           + 
Sbjct: 163 QN 164

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 86.3 bits (215), Expect = 5e-20
 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 19/145 (13%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           AA     +  K L++        D  G TP+H A      G   +L+     A+++  + 
Sbjct: 32  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR--NRATDLDARM 89

Query: 56  RK-MTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
               T L LAA      ++E +I+   +      VD+ G + LH+A     V+    LL+
Sbjct: 90  HDGTTPLILAARLAVEGMLEDLINSHADVN---AVDDLGKSALHWAAAVNNVDAAVVLLK 146

Query: 113 NNPLARSLINEGDAKGNTPLHVLAA 137
           N   A    +  + +  TPL  LAA
Sbjct: 147 NG--AN--KDMQNNREETPLF-LAA 166

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 85.5 bits (213), Expect = 9e-20
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 7   LLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAA 65
            +    +L  +TD+ G T +H AA Y        LL  + SA  NI D   + T LH A 
Sbjct: 10  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL--EASADANIQDNMGR-TPLHAAV 66

Query: 66  GKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGD 125
                 + + +I       +   + G   L  A        L +L+ ++    + +N  D
Sbjct: 67  SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH----ADVNAVD 122

Query: 126 AKGNTPLHVLAAIR 139
             G + LH  AA  
Sbjct: 123 DLGKSALH-WAAAV 135

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 81.3 bits (202), Expect = 4e-18
 Identities = 32/150 (21%), Positives = 49/150 (32%), Gaps = 25/150 (16%)

Query: 2   AALSKLLEIKKNLIK-------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIAD 53
           A  +    + + LI+            G TP+  AA     G +  L+     A  N  D
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN--SHADVNAVD 122

Query: 54  KDRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLL 111
              K +ALH AA   +      ++    N +     +NR    L  A      E    LL
Sbjct: 123 DLGK-SALHWAAAVNNVDAAVVLLKNGANKDM---QNNREETPLFLAAREGSYETAKVLL 178

Query: 112 EN--NPLARSLINEGDAKGNTPLHVLAAIR 139
           ++  N       +  D     P  + A  R
Sbjct: 179 DHFAN------RDITDHMDRLPRDI-AQER 201

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 74.8 bits (185), Expect = 8e-16
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 26/141 (18%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA   +  + ++LI         D  G + +H+AA   N     +LL+    A+ ++ + 
Sbjct: 99  AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK--NGANKDMQNN 156

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
             + T L LAA +G     + ++    N +     D+        A      +       
Sbjct: 157 REE-TPLFLAAREGSYETAKVLLDHFANRDI---TDHMDRLPRDIAQERMHHD------- 205

Query: 113 NNPLARSLINEGDAKGNTPLH 133
              + R L        +  LH
Sbjct: 206 ---IVRLLDEYN-LVRSPQLH 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 86.5 bits (214), Expect = 6e-20
 Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 16/174 (9%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           A   KL E+K+ ++        TDQ   T +H+A   G+   V  LL        N  D 
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL--QLGVPVNDKDD 71

Query: 55  DRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENN 114
               + LH+AA  G   IV+A++ K       V+  G   LHYA    R E    LLE  
Sbjct: 72  AGW-SPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGG 129

Query: 115 PLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI 168
               +  +  D    T +H  AA + N   V ++   +A+ +  + +  +  H+
Sbjct: 130 ----ANPDAKDHYDATAMH-RAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 14/150 (9%)

Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEAIISK- 79
                + A           +L     +     D+D + TALH A   G   IVE ++   
Sbjct: 7   NIMICNLAYSGKLDELKERILA--DKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLG 63

Query: 80  -NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
                    D+ GW+ LH A  +   E +  LL       + +N  +  G TPLH  AA 
Sbjct: 64  VPVND---KDDAGWSPLHIAASAGXDEIVKALLVKG----AHVNAVNQNGCTPLH-YAAS 115

Query: 139 RPNEFDVDLVRKTQANYDAVNKQIVSVRHI 168
           +       ++ +  AN DA +    +  H 
Sbjct: 116 KNRHEIAVMLLEGGANPDAKDHYDATAMHR 145

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 15/142 (10%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           AA +   EI K L+         +Q G TP+HYAA    +    +LLE     +N   KD
Sbjct: 80  AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE---GGANPDAKD 136

Query: 56  RK-MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENN 114
               TA+H AA KG+ ++V  ++          D  G   LH A    RVE+   L+   
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNI-QDTEGNTPLHLACDEERVEEAKFLVTQG 195

Query: 115 PLARSLINEGDAKGNTPLHVLA 136
               + I   + +  TPL V  
Sbjct: 196 ----ASIYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
               D Y  T +H AA  GN   V++LL    S  NI D +   T LHLA  +      +
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGN-TPLHLACDEERVEEAK 189

Query: 75  AIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
            ++++    Y   +      L  A     +      L  
Sbjct: 190 FLVTQGASIYI-ENKEEKTPLQVAKGGLGLILK--RLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 4   LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALH 62
           +  +L   K      D  G TP+H A           L+      ++I  ++++  T L 
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT---QGASIYIENKEEKTPLQ 210

Query: 63  LAAGKGDARIVEAIISK 79
           +A G     ++   +++
Sbjct: 211 VAKGGLG--LILKRLAE 225

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 84.8 bits (211), Expect = 7e-20
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 14/134 (10%)

Query: 7   LLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAA 65
            L+  +N + + D +G++P+H+A   G    V +L+   + A  N+ ++    T LHLAA
Sbjct: 24  WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM--RGARINVMNRGDD-TPLHLAA 80

Query: 66  GKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINE 123
             G   IV+ ++    +      V+  G   LHYA    + +   +L+ N     +L++ 
Sbjct: 81  SHGHRDIVQKLLQYKADINA---VNEHGNVPLHYACFWGQDQVAEDLVANG----ALVSI 133

Query: 124 GDAKGNTPLHVLAA 137
            +  G  P+   A 
Sbjct: 134 CNKYGEMPVD-KAK 146

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 79.4 bits (197), Expect = 6e-18
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK-- 79
               I      GN   V L L+  ++  N  D     + LH A  +G + +VE +I +  
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLIMRGA 63

Query: 80  NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKGNTPLHVLAA 137
                  ++      LH A      + +  LL+   +      IN  +  GN PLH  A 
Sbjct: 64  RINV---MNRGDDTPLHLAASHGHRDIVQKLLQYKAD------INAVNEHGNVPLH-YAC 113

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 65.1 bits (160), Expect = 7e-13
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA     +I + L++        +++G  P+HYA ++G       L+     A  +I +K
Sbjct: 79  AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA--NGALVSICNK 136

Query: 55  DRKMTALHLAAGKGDARIVEAIISK 79
             +   +  A       + E     
Sbjct: 137 YGE-MPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.8 bits (128), Expect = 1e-08
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 52  ADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLL 111
              +  M  +     +G+A  V   +          D+ G++ LH+A    R   +  L+
Sbjct: 1   GSPEF-MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 112 ENNPLARSLINEGDAKGNTPLHVLAA 137
                AR  IN  +   +TPLH LAA
Sbjct: 60  MRG--AR--INVMNRGDDTPLH-LAA 80

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 48.2 bits (116), Expect = 5e-07
 Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 14/73 (19%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           A      ++ ++L+         ++YG  P+  A                       + +
Sbjct: 112 ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE------KMGQNLN 165

Query: 56  RKMTALHLAAGKG 68
           R          KG
Sbjct: 166 R--IPYKDTFWKG 176

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 87.6 bits (218), Expect = 1e-19
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 27/150 (18%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           AA     +  + LI+        +++G T +H A  +G   T   L          +   
Sbjct: 27  AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA--SVGE-VHSLWH 83

Query: 56  RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNP 115
            +   +HLA       +V A++            RG             E          
Sbjct: 84  GQ-KPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNECDERE---------- 125

Query: 116 LARSLINEGDAKGNTPLHVLAAIRPNEFDV 145
           +     +    KG T LH    + P   ++
Sbjct: 126 VNEIGSHVKHCKGQTALHWCVGLGPEYLEM 155

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 21/134 (15%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLA 64
            + +  K    ++D      IH AA  G    V  L+E     S  I ++    TALHLA
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRF-GCTALHLA 60

Query: 65  AGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLIN 122
              G     + + S              G   +H AV++ + +          L  +L+ 
Sbjct: 61  CKFGCVDTAKYLASVGEVHS-----LWHGQKPIHLAVMANKTD----------LVVALVE 105

Query: 123 EGDAKGNTPLHVLA 136
               +G  P  +L 
Sbjct: 106 GAKERGQMPESLLN 119

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.0 bits (206), Expect = 6e-18
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 2   AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYG--TVNLLLETDQSAS-NIADKDRKM 58
                  E+ +         G T +H+    G      + +L++    AS    DK  + 
Sbjct: 118 LNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ--LGASPTAKDKADE- 174

Query: 59  TALHLAAGKGDARIVEAIISKNPECY----ELVDNRGWNFLHYAVVSFRVEKLTNLLENN 114
           T L  A    +   ++ ++   P       +  + +G + LH+A++    +     +E  
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG 234

Query: 115 PLARSLINEGDAKGNTPLHVLAA 137
                 +N  D +   PL+ L+ 
Sbjct: 235 --ID--VNMEDNEHTVPLY-LSV 252

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.1 bits (201), Expect = 3e-17
 Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 20/133 (15%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIV 73
           +   ++ G + +H+A            +E       N+ D +     L+L+       + 
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRFVE--MGIDVNMEDNEHT-VPLYLSVRAAMVLLT 260

Query: 74  EAIISKNPECYEL------------VDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLI 121
           + ++ K                         +F+  A    + E L  L E        +
Sbjct: 261 KELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL----DEV 316

Query: 122 NEGDAKGNTPLHV 134
                 G      
Sbjct: 317 VRSLNTGAGGAVK 329

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 20/138 (14%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK----MTALHLAAGKGDA 70
               D+   TP+  A  + N   ++L+++T  S  +    D       + LH A      
Sbjct: 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPS-KSSLRLDYANKQGNSHLHWAILINWE 224

Query: 71  RIVEAIISK--NPECYELVDNRGWNFLHYA-------VVSFRVEKLTNLLENNPLAR--S 119
            +    +    +       DN     L+ +       +    ++K    L         +
Sbjct: 225 DVAMRFVEMGIDVNM---EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGT 281

Query: 120 LINEGDAKGNTPLHVLAA 137
            +          +   AA
Sbjct: 282 TVLPDRVVWLDFVP-AAA 298

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 2   AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTAL 61
           A ++   ++   L++   + G  P              +         ++     + TAL
Sbjct: 91  AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGS-------HVKHCKGQ-TAL 142

Query: 62  HLAAGKGDAR--IVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLA 117
           H   G G     +++ ++    +P      D      L  A+     E L  +++  P  
Sbjct: 143 HWCVGLGPEYLEMIKILVQLGASPTA---KDKADETPLMRAMEFRNREALDLMMDTVPSK 199

Query: 118 RSL-INEGDAKGNTPLHVLAA 137
            SL ++  + +GN+ LH  A 
Sbjct: 200 SSLRLDYANKQGNSHLH-WAI 219

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.8 bits (177), Expect = 4e-14
 Identities = 14/150 (9%), Positives = 34/150 (22%), Gaps = 22/150 (14%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLE----------TD 45
           A L    ++    ++        D     P++ +           LL+            
Sbjct: 218 AILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPY 277

Query: 46  QSASNIADKDRK-MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRV 104
            + + +       +  +  AA      +++ +  K  E      N G             
Sbjct: 278 HNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV-VRSLNTGAGGAVKRKKKAAP 336

Query: 105 EKLTNLLENNPLARSLINEGDAKGNTPLHV 134
                 L  +    + +            V
Sbjct: 337 AVKRMKLAPS----APVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 6/83 (7%), Positives = 15/83 (18%), Gaps = 5/83 (6%)

Query: 17  ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEA 75
                    +  AA       + LL E  +      +              K    +   
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQE--KLDEVVRSLNTGA-GGAVKRKKKAAPAVKRM 341

Query: 76  IISKNPECYELVDNRGWNFLHYA 98
            ++ +                 +
Sbjct: 342 KLAPSAPV-RTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 9/70 (12%), Positives = 18/70 (25%), Gaps = 10/70 (14%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA     E+ + L +       +   G                 + L    SA      +
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA--PSAPVRTRSR 354

Query: 55  DRKMTALHLA 64
            R   +  ++
Sbjct: 355 SRA-RSSAVS 363

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 83.2 bits (207), Expect = 2e-19
 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 23/146 (15%)

Query: 2   AALSKLLEIKKNLIK-----ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKD 55
           AA +   +  + L+       TD  G +P+H AA YG++ T  +LL      S +   K 
Sbjct: 9   AARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKV 66

Query: 56  RKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
            + T LH+AA +G A IVE ++    +       D      LH+A      E +  L++ 
Sbjct: 67  DR-TPLHMAASEGHANIVEVLLKHGADVNA---KDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 114 --NPLARSLINEGDAKGNTPLHVLAA 137
             +      ++       T    ++ 
Sbjct: 123 GAD------VHTQSKFCKTAFD-ISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.3 bits (171), Expect = 1e-14
 Identities = 25/120 (20%), Positives = 36/120 (30%), Gaps = 13/120 (10%)

Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP 81
               +  AA  G    V +L+     A    D     + LHLAA  G     E ++    
Sbjct: 2   LGKKLLEAARAGQDDEVRILMA--NGAPFTTDWLGT-SPLHLAAQYGHFSTTEVLLRAGV 58

Query: 82  ECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKGNTPLHVLAAIR 139
                        LH A        +  LL++  +      +N  D    T LH  A   
Sbjct: 59  SRDA-RTKVDRTPLHMAASEGHANIVEVLLKHGAD------VNAKDMLKMTALH-WATEH 110

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 59.7 bits (146), Expect = 4e-11
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA      I + L+K        D    T +H+A  + +   V LL++    A  +   K
Sbjct: 74  AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK--YGADVHTQSK 131

Query: 55  DRKMTALHLAAGKGDARIVE 74
             K TA  ++   G+  + E
Sbjct: 132 FCK-TAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 41.6 bits (99), Expect = 7e-05
 Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 6/46 (13%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLL 41
           A      E+ + LIK         ++  T    +   GN     +L
Sbjct: 107 ATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 86.8 bits (216), Expect = 2e-19
 Identities = 39/174 (22%), Positives = 62/174 (35%), Gaps = 33/174 (18%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA    + I + L++        D+ G  P+H A  YG+Y    LLL+    A  N  D 
Sbjct: 65  AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK--HGACVNAMDL 122

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
            +  T LH AA K    +   ++S   +P     V+  G + +  A      E+LT   +
Sbjct: 123 WQF-TPLHEAASKNRVEVCSLLLSHGADPTL---VNCHGKSAVDMAPTPELRERLTYEFK 178

Query: 113 NNPL------------ARSLINEG-----DAKGNTPLHVLAAIRPNEFDVDLVR 149
            + L             ++L  E           T LH  A    +     +  
Sbjct: 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH-CAVASLHPKRKQVAE 231

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 83.3 bits (207), Expect = 4e-18
 Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 25/155 (16%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           A      ++   L         +D    TP+H AA Y     V LLL+    A  +  DK
Sbjct: 32  ARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ--HGADVHAKDK 89

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVE--KLTNL 110
              +  LH A   G   + E ++           +D   +  LH A    RVE   L  L
Sbjct: 90  G-GLVPLHNACSYGHYEVTELLLKHGACVNA---MDLWQFTPLHEAASKNRVEVCSL--L 143

Query: 111 LENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDV 145
           L +     +     +  G + + +  A  P   + 
Sbjct: 144 LSHG----ADPTLVNCHGKSAVDM--APTPELRER 172

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 75.2 bits (186), Expect = 2e-15
 Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 15/127 (11%)

Query: 15  IKETDQYGWTPIHYAAYYGNY-GTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARI 72
              T +Y    +  AA  GN    + LL     + + + +D   K T LHLAAG    RI
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTP--LNVNCHASDGR-KSTPLHLAAGYNRVRI 73

Query: 73  VEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNT 130
           V+ ++    +       D  G   LH A      E    LL++     + +N  D    T
Sbjct: 74  VQLLLQHGADV---HAKDKGGLVPLHNACSYGHYEVTELLLKHG----ACVNAMDLWQFT 126

Query: 131 PLHVLAA 137
           PLH  AA
Sbjct: 127 PLH-EAA 132

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 74.1 bits (183), Expect = 6e-15
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 17/124 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIV 73
           + E ++   TP+H AA   +   + +L +    A  N  D   + TALH AA  G  +  
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHK--HGAKMNALDSLGQ-TALHRAALAGHLQTC 296

Query: 74  EAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLH 133
             ++S   +   ++  +G+            E +  +L  +    + +   D   +  L 
Sbjct: 297 RLLLSYGSDP-SIISLQGFTAAQMG-----NEAVQQILSES----TPMRTSD--VDYRLL 344

Query: 134 VLAA 137
             A+
Sbjct: 345 -EAS 347

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.3 bits (137), Expect = 4e-09
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 33  GNYG-TVNLLLETDQSASNIADKDRKMTALHLAAGKGDA-RIVEAIISKNPECYELVDNR 90
           G +G +   L   D SA  +   + K   L  AA  G+  +++  +   N  C    D R
Sbjct: 1   GEFGKSALDLA--DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGR 57

Query: 91  GWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
               LH A    RV  +  LL++     + ++  D  G  PLH  A 
Sbjct: 58  KSTPLHLAAGYNRVRIVQLLLQHG----ADVHAKDKGGLVPLH-NAC 99

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 18/104 (17%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA     ++ + L K        D  G T +H AA  G+  T  LLL     +  +I   
Sbjct: 254 AAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS--YGSDPSIISL 311

Query: 55  DRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYA 98
               TA  +         V+ I+S++       D      L  A
Sbjct: 312 QGF-TAAQMG-----NEAVQQILSESTPMRT-SDVDYR--LLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 17/75 (22%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSA-SNIADK 54
           AAL+  L+  + L+            G+T             V  +L   +S     +D 
Sbjct: 287 AALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQILS--ESTPMRTSDV 339

Query: 55  DRKMTALHLAAGKGD 69
           D     L  A+  GD
Sbjct: 340 D---YRLLEASKAGD 351

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 84.2 bits (209), Expect = 3e-19
 Identities = 34/154 (22%), Positives = 52/154 (33%), Gaps = 13/154 (8%)

Query: 10  IKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKG 68
           I  N + E  +    P+H AA  GN   +   L+       N  DK    TAL+ A   G
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLD--NRVGVNGLDKAGS-TALYWACHGG 117

Query: 69  DARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVE--KLTNLLENNPLARSLINEGDA 126
              IVE + ++        +  G   LH A      +  +L  LL     AR   +  + 
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL--LLAKG--AR--TDLRNI 171

Query: 127 KGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNK 160
           +       +A        +   + T A     N 
Sbjct: 172 EKKLAFD-MATNAACASLLKKKQGTDAVRTLSNA 204

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 83.8 bits (208), Expect = 4e-19
 Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 16/141 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           AA    L   +  +         D+ G T +++A + G+   V +L        N  +K 
Sbjct: 80  AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL 139

Query: 56  RKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
              TALH AA KG A IV+ +++K       +L +         A  +     L      
Sbjct: 140 GD-TALHAAAWKGYADIVQLLLAKGART---DLRNIEKKLAFDMATNAACASLLKKKQGT 195

Query: 114 NPLARSLINEGDAKGNTPLHV 134
           +    ++    +A+       
Sbjct: 196 D----AVRTLSNAEDYLDDED 212

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 77.3 bits (191), Expect = 9e-17
 Identities = 28/146 (19%), Positives = 44/146 (30%), Gaps = 16/146 (10%)

Query: 17  ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAI 76
           +  + G   +  A Y     T + L    +    I   D   T       KG   ++ + 
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYI--EEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 77  ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLA 136
                           N LH A     +  L   L+N    R  +N  D  G+T L+   
Sbjct: 65  YVAE------QAESIDNPLHEAAKRGNLSWLRECLDN----RVGVNGLDKAGSTALYW-- 112

Query: 137 AIRPNEFDV--DLVRKTQANYDAVNK 160
           A      D+   L  +     +  NK
Sbjct: 113 ACHGGHKDIVEMLFTQPNIELNQQNK 138

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 71.9 bits (177), Expect = 8e-15
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 2   AALSKLLEIKKNLIK-------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIAD 53
           A      +I + L         + ++ G T +H AA+ G    V LLL   + A  ++ +
Sbjct: 113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA--KGARTDLRN 170

Query: 54  KDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYA 98
            ++K  A  +A     A +++     +     L +   +     +
Sbjct: 171 IEKK-LAFDMATNAACASLLKKKQGTDAVR-TLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 16/134 (11%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 65
             L I++  I        T        G  G +               +      LH AA
Sbjct: 29  DELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV------AEQAESID-NPLHEAA 81

Query: 66  GKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINE 123
            +G+   +   +           +D  G   L++A      + +  +L   P     +N+
Sbjct: 82  KRGNLSWLRECLDNRVGVNG---LDKAGSTALYWACHGGHKD-IVEMLFTQPNIE--LNQ 135

Query: 124 GDAKGNTPLHVLAA 137
            +  G+T LH  AA
Sbjct: 136 QNKLGDTALH-AAA 148

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 7/73 (9%), Positives = 19/73 (26%), Gaps = 8/73 (10%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           AA     +I + L+         +         A        +     TD +   +++ +
Sbjct: 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAE 205

Query: 56  RKMTALHLAAGKG 68
                   +  + 
Sbjct: 206 -DYLDDEDSDLEH 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 84.0 bits (209), Expect = 4e-19
 Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 13/142 (9%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           AA +  LE  K LIK        D  G T +H AA  G+Y  V  LL   Q   N  D  
Sbjct: 51  AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110

Query: 56  RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNP 115
              T +  A       +V+ ++SK  +   + DN     LH+A  S  V+    LL    
Sbjct: 111 GW-TPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAK- 167

Query: 116 LARSLINEGDAKGNTPLHVLAA 137
                ++  +  G++PLH +AA
Sbjct: 168 ---CDLHAVNIHGDSPLH-IAA 185

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 84.0 bits (209), Expect = 4e-19
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 20/143 (13%)

Query: 2   AALSKLLEIKKNLIK-------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIAD 53
           AA     E+ + L+          D  GWTP+ +A  Y +   V LLL   + +  NI D
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS--KGSDINIRD 141

Query: 54  KDRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLL 111
            +     LH AA  G   I E +++   +      V+  G + LH A    R + +   L
Sbjct: 142 NEEN-ICLHWAAFSGCVDIAEILLAAKCDLHA---VNIHGDSPLHIAARENRYDCVVLFL 197

Query: 112 ENNPLARSLINEGDAKGNTPLHV 134
             +    S +   + +G TPL  
Sbjct: 198 SRD----SDVTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 80.1 bits (199), Expect = 1e-17
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 9/124 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIV 73
            K   Q   +P+H AA  G+    ++L++    A+ +   +D + T L  AA       V
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQ--AGANIDTCSED-QRTPLMEAAENNHLEAV 60

Query: 74  EAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLH 133
           + +I          D  G   LH A      E +  LL N    +  +N  D  G TP+ 
Sbjct: 61  KYLIKAGALVDP-KDAEGSTCLHLAAKKGHYEVVQYLLSNG---QMDVNCQDDGGWTPMI 116

Query: 134 VLAA 137
             A 
Sbjct: 117 -WAT 119

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.0 bits (157), Expect = 5e-12
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA S  ++I + L+         + +G +P+H AA    Y  V L L   + +   + +K
Sbjct: 151 AAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS--RDSDVTLKNK 208

Query: 55  DRKMTALHLAAGKGDARIVEAIISKN 80
           + + T L  A+          +    
Sbjct: 209 EGE-TPLQCASLNSQVWSALQMSKAL 233

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 82.9 bits (206), Expect = 6e-19
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 21/151 (13%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           A  +  +EI K LI         +    +P  YA   G    +  +L    +  ++   +
Sbjct: 46  AVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML--KHATPDLNKHN 103

Query: 56  RK-MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENN 114
           R    AL  AA KG    V+ ++    E  +  ++ G+  L  AV      +     +  
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ--LYQD-- 159

Query: 115 PLARSLI------NEGDAKGNTPLHVLAAIR 139
            + + L+      +  D  G T +   A  +
Sbjct: 160 -IVKLLMENGADQSIKDNSGRTAMD-YANQK 188

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.3 bits (202), Expect = 2e-18
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 14/147 (9%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           A      ++K+ L        E D  G TP++ A +  +      L++  + A  N+ + 
Sbjct: 13  ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID--RGADINLQNS 70

Query: 55  DRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENN 114
               +    A  +G   I+  ++          +  G N L  A     ++    LL  +
Sbjct: 71  ISD-SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID-NVKLLLED 128

Query: 115 PLARSLINEGDAKGNTPLHVLAAIRPN 141
                 I+  +  G T L   A     
Sbjct: 129 GRED--IDFQNDFGYTALI-EAVGLRE 152

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 75.6 bits (187), Expect = 2e-16
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 16/147 (10%)

Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEAII 77
                  +  A          +L +   +   +  D +   T L++A    D  I +A+I
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQD--TTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALI 59

Query: 78  SK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL 135
            +  +       ++   +   YA    R E L  +L++   A   +N+ +  G   L   
Sbjct: 60  DRGADINL---QNSISDSPYLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGNALI-P 112

Query: 136 AAIRPNEFDV--DLVRKTQANYDAVNK 160
           AA +    D    L+   + + D  N 
Sbjct: 113 AAEK-GHIDNVKLLLEDGREDIDFQND 138

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 56.3 bits (137), Expect = 1e-09
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 16/92 (17%)

Query: 2   AALSKLLEIKKNLIK-------ETDQYGWTPIHYAAYYGNYG-----TVNLLLETDQSAS 49
           AA    ++  K L++         + +G+T +  A             V LL+E    A 
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME--NGAD 170

Query: 50  -NIADKDRKMTALHLAAGKGDARIVEAIISKN 80
            +I D   + TA+  A  KG   I + +   N
Sbjct: 171 QSIKDNSGR-TAMDYANQKGYTEISKILAQYN 201

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 85.6 bits (213), Expect = 1e-18
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 16/143 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA    +E+ ++L++           G TP+H AA  G+   V LLL   + A+ N+ +K
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS--KQANGNLGNK 276

Query: 55  DRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENN 114
               T LHL A +G   + + +I       +     G+  LH A     ++ +  LL++ 
Sbjct: 277 SGL-TPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334

Query: 115 PLARSLINEGDAKGNTPLHVLAA 137
               + +N     G +PLH  AA
Sbjct: 335 ----ADVNAKTKLGYSPLH-QAA 352

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 84.9 bits (211), Expect = 2e-18
 Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA    +E    L++         + G+TP+H AA YG      LLLE  + A  N A K
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE--RDAHPNAAGK 177

Query: 55  DRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENN 114
           +  +T LH+A    +  IV+ ++ +           G+  LH A    +VE   +LL+  
Sbjct: 178 N-GLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235

Query: 115 PLARSLINEGDAKGNTPLHVLAA 137
                  N    +G TPLH LAA
Sbjct: 236 ----GSANAESVQGVTPLH-LAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 83.7 bits (208), Expect = 5e-18
 Identities = 42/147 (28%), Positives = 60/147 (40%), Gaps = 20/147 (13%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA      + K L++           G TP+H AA  G+  TV  LLE  + AS     K
Sbjct: 87  AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE--KEASQACMTK 144

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
               T LH+AA  G  R+ E ++ +  +P         G   LH AV    ++ +  LL 
Sbjct: 145 KGF-TPLHVAAKYGKVRVAELLLERDAHPNA---AGKNGLTPLHVAVHHNNLDIVKLLLP 200

Query: 113 NNPLARSLINEGDAKGNTPLHVLAAIR 139
                    +     G TPLH +AA +
Sbjct: 201 RG----GSPHSPAWNGYTPLH-IAAKQ 222

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 82.5 bits (205), Expect = 1e-17
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 21/181 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA     E+   L+         ++ G TP+H  A  G+    ++L++       +   +
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK--HGVMVDATTR 309

Query: 55  DRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENN 114
               T LH+A+  G+ ++V+ ++    +        G++ LH A      + +T LL+N 
Sbjct: 310 MGY-TPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367

Query: 115 PLARSLINEGDAKGNTPLHVLAAIRPNEFDV----DLVRKTQANYDAVNKQIVSVRHIFN 170
               +  NE  + G TPL +  A R     V     +V    +     +K  +S     +
Sbjct: 368 ----ASPNEVSSDGTTPLAI--AKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVD 421

Query: 171 Y 171
            
Sbjct: 422 E 422

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 81.0 bits (201), Expect = 4e-17
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIV 73
                + G TP+H A++ G+   V  LL+  + AS N+++   + T LH+AA  G   + 
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQ--RGASPNVSNVKVE-TPLHMAARAGHTEVA 63

Query: 74  EAIISKNPECYELVDNRGWNFLHYAVVSFRVE--KLTNLLENNPLARSLINEGDAKGNTP 131
           + ++    +            LH A         KL  LLENN    +  N     G+TP
Sbjct: 64  KYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKL--LLENN----ANPNLATTAGHTP 116

Query: 132 LHVLAA 137
           LH +AA
Sbjct: 117 LH-IAA 121

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 84.2 bits (209), Expect = 2e-18
 Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 21/153 (13%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           A L++   +   L+K        ++   + +H AA   ++G +  +L + +   +I + D
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232

Query: 56  RK-MTALHLAA---GKGDARIVEAIISK-------NPECYELVDNRGWNFLHYAVVSFRV 104
           R  MTAL + A   G+      + ++ K            +    +G   LHYA     +
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM 292

Query: 105 EKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
             +   L     +    ++ D  G TP+  LAA
Sbjct: 293 P-IVKYLVGEKGSN--KDKQDEDGKTPIM-LAA 321

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 83.8 bits (208), Expect = 3e-18
 Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 8   LEIKKNLIKE-----TDQYGWTPIHYAAYYGNYGTVNLLLETDQSA--SNIADKDRK--- 57
             I + + +E       ++  T +H+ A   +      L+  +     +  AD +     
Sbjct: 106 YAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD 165

Query: 58  -MTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENN 114
             T L LA      R+V  ++    +P      +    + LH A  +     +  +L + 
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKAGADPTI---YNKSERSALHQAAANRDFGMMVYMLNST 222

Query: 115 PLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVR 149
            L    I E D  G T L  + A       V   +
Sbjct: 223 KLKGD-IEELDRNGMTALM-IVAHNEGRDQVASAK 255

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 82.7 bits (205), Expect = 7e-18
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 17/158 (10%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIV 73
           +   D    TP+  A        V  L++    A   I +K  + +ALH AA   D  ++
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMK--AGADPTIYNKSER-SALHQAAANRDFGMM 215

Query: 74  EAIISKNPECYEL--VDNRGWNFLHYAVVSFRVEKLTN---LLEN----NPLARSLINEG 124
             +++      ++  +D  G   L     +   +++ +   L+E     +    +  +  
Sbjct: 216 VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275

Query: 125 DAKGNTPLHVLAAIRPNEFDV--DLVRKTQANYDAVNK 160
             KG T LH  AA   +   +   LV +  +N D  ++
Sbjct: 276 KYKGRTALH-YAAQV-SNMPIVKYLVGEKGSNKDKQDE 311

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 19/144 (13%)

Query: 1   DAALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MT 59
           +A+    ++ ++N +     Y   P       GN    +             + + +   
Sbjct: 43  EASYDGYIKRQRNEL---QHYSLYPNPQGYGNGNDFLGDFNHTNL---QIPTEPEPESPI 96

Query: 60  ALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARS 119
            LH  A  G   I E I  ++    +         LH+   +   EK  +L+ +   A+ 
Sbjct: 97  KLHTEA-AGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVH--EAKE 151

Query: 120 L------INEGDAKGNTPLHVLAA 137
                  +N  D   NTPL  LA 
Sbjct: 152 CIAAGADVNAMDCDENTPLM-LAV 174

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 74.2 bits (183), Expect = 5e-15
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 19/132 (14%)

Query: 15  IKETDQYGWTPIHYAAYYGNYG---TVNLLLE-------TDQSASNIADKDRKMTALHLA 64
           I+E D+ G T +   A+        +  LL+E          +  +      + TALH A
Sbjct: 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR-TALHYA 286

Query: 65  AGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVV--SFRVEKLTNLLENNPLARSLIN 122
           A   +  IV+ ++ +     +  D  G   +  A       V     L++      + + 
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY--LIQQG----ASVE 340

Query: 123 EGDAKGNTPLHV 134
             DA  +T   +
Sbjct: 341 AVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.7 bits (161), Expect = 4e-12
 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 2   AALSKLLEIKKNLIK-------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIAD 53
           AA    + I K L+        + D+ G TPI  AA  G    V  L+   Q AS    D
Sbjct: 286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI--QQGASVEAVD 343

Query: 54  KDRKMTALHLAAGKGDARIVEAIISKNPE 82
                TA  LA       IV+      PE
Sbjct: 344 ATDH-TARQLAQANNHHNIVDIFDRCRPE 371

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 81.9 bits (203), Expect = 2e-18
 Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 26/161 (16%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLE----TDQSASNIADKDRKMTALHLAAGKGDA 70
           + +    G T +H AA Y N     +L+E               + + TALH+A    + 
Sbjct: 30  VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ-TALHIAVINQNV 88

Query: 71  RIVEAIISK------------NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPL 116
            +V A++++                   +   G + L +A      E +  L+E+  +  
Sbjct: 89  NLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-- 146

Query: 117 ARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDA 157
               I   D+ GNT LH +  ++PN+     +     +YD 
Sbjct: 147 ----IRAQDSLGNTVLH-ILILQPNKTFACQMYNLLLSYDG 182

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 34/169 (20%), Positives = 49/169 (28%), Gaps = 38/169 (22%)

Query: 2   AALSKLLEIKKNLIK-----------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS- 49
           AAL   LE    L++                G T +H A    N   V  LL   + AS 
Sbjct: 44  AALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA--RGASV 101

Query: 50  NIADKDRKM------------TALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFL 95
           +                      L  AA  G   IV  +I    +       D+ G   L
Sbjct: 102 SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA---QDSLGNTVL 158

Query: 96  HYAVVSFRVEKLTNLLEN------NPLARSLINEGDAKGNTPLHVLAAI 138
           H  ++         +             +SL    + +G TP   LA +
Sbjct: 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFK-LAGV 206

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 72.3 bits (178), Expect = 6e-15
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 17/131 (12%)

Query: 21  YGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEAIISK 79
              +P+  AA   +   ++ LL+  +    +      + TALH+AA   +      ++  
Sbjct: 2   IWESPLLLAAKENDVQALSKLLK-FEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEA 59

Query: 80  NPECYELV----DNRGWNFLHYAVVSFRVEKLTNLLE---------NNPLARSLINEGDA 126
            PE            G   LH AV++  V  +  LL             +     +    
Sbjct: 60  APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119

Query: 127 KGNTPLHVLAA 137
            G  PL   AA
Sbjct: 120 YGEHPLS-FAA 129

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 16/93 (17%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTV----NLLLETD-----Q 46
           AA     EI + LI+        D  G T +H      N        NLLL  D     +
Sbjct: 128 AACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK 187

Query: 47  SASNIADKDRKMTALHLAAGKGDARIVEAIISK 79
           S   + +     T   LA  +G+  + + ++ K
Sbjct: 188 SLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQK 219

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 82.1 bits (204), Expect = 3e-18
 Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 9/124 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIV 73
           +   D Y    I  A  YG Y     L+E          DK+  +T LH AA      +V
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVE--AGYDVRQPDKE-NVTLLHWAAINNRIDLV 58

Query: 74  EAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLH 133
           +  ISK     +L  +     LH+A     +  +  L++    A    +  D +G + +H
Sbjct: 59  KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG--AD--PSLIDGEGCSCIH 114

Query: 134 VLAA 137
            LAA
Sbjct: 115 -LAA 117

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 78.2 bits (194), Expect = 5e-17
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 16/144 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           A     L +   L+K        D  G + IH AA +G+   V  L+   +    ++ D+
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA--KGQDVDMMDQ 140

Query: 55  DRKMTALHLAAGKGDAR-IVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
           +  MT L  AA +  +      +++ N              LH+AV++     ++ LLE 
Sbjct: 141 N-GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199

Query: 114 NPLARSLINEGDAKGNTPLHVLAA 137
                + ++  + KG + L  LA 
Sbjct: 200 G----ANVDAQNIKGESALD-LAK 218

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 74.8 bits (185), Expect = 8e-16
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 23/144 (15%)

Query: 8   LEIKKNLI-------KETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMT 59
           +++ K  I       +       TP+H+A   G+   V  L++    A  ++ D +   +
Sbjct: 55  IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK--YGADPSLIDGEGC-S 111

Query: 60  ALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVV---SFRVEKLTNLLENNPL 116
            +HLAA  G   IV  +I+K  +  +++D  G   L +A     S    +L  LL  N  
Sbjct: 112 CIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRL--LLTFNV- 167

Query: 117 ARSLINEGD-AKGNTPLHVLAAIR 139
               +N GD    NT LH  A + 
Sbjct: 168 ---SVNLGDKYHKNTALH-WAVLA 187

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 11/80 (13%)

Query: 8   LEIKKNLIK------ETDQY-GWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMT 59
           ++  + L+         D+Y   T +H+A   GN   ++LLLE    A+ +  +   + +
Sbjct: 156 VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE--AGANVDAQNIKGE-S 212

Query: 60  ALHLAAGKGDARIVEAIISK 79
           AL LA  + +  ++  +   
Sbjct: 213 ALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLE 43
           A L+    +   L++        +  G + +  A    N   +N L E
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 82.2 bits (204), Expect = 4e-18
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 24/139 (17%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK--MTALHL 63
           K     K+   + D +G +  +YA    N   V  LL      +  A K+       LH 
Sbjct: 16  KSFLSSKD-TFKADVHGHSASYYAIADNNVRLVCTLL------NAGALKNLLENEFPLHQ 68

Query: 64  AAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVE--KLTNLLENNPLARS 119
           AA   D +IV+ ++    +       D++G   L+YAV S  ++  KL   ++ N     
Sbjct: 69  AATLEDTKIVKILLFSGLDDSQ---FDDKGNTALYYAVDSGNMQTVKL--FVKKN----W 119

Query: 120 LINEGDAKG-NTPLHVLAA 137
            +      G  T  +  A 
Sbjct: 120 RLMFYGKTGWKTSFY-HAV 137

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 82.2 bits (204), Expect = 4e-18
 Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA  +  +I K L+       + D  G T ++YA   GN  TV L ++  ++       K
Sbjct: 69  AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK--KNWRLMFYGK 126

Query: 55  DRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENN 114
               T+ + A    D  IV   +S+ P  ++       + +H  + +  V+ +  LL+  
Sbjct: 127 TGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYM 184

Query: 115 PLARSLINEGDAKGNTPLHVLAAIR 139
                  N  ++    P   LA   
Sbjct: 185 --TS--TNTNNSLLFIPDIKLAIDN 205

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 69.5 bits (171), Expect = 1e-13
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 16/129 (12%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLA 64
               + +           + IH     G+   + LLL  D   S N  +    +  + LA
Sbjct: 146 SYF-LSEIPSTFDLAILLSCIHITIKNGHVDMMILLL--DYMTSTNTNNSLLFIPDIKLA 202

Query: 65  AGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEG 124
               D  +++A+   +      + +         V+    E    ++E +          
Sbjct: 203 IDNKDIEMLQALFKYDIN----IYSA----NLENVLLDDAEIAKMIIEKH--VE--YKSD 250

Query: 125 DAKGNTPLH 133
               +  + 
Sbjct: 251 SYTKDLDIV 259

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 81.8 bits (203), Expect = 7e-18
 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 21/145 (14%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA+       +NLI              +P+H A   G+   V +LL     A  N    
Sbjct: 66  AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL--KHGAQVNGVTA 123

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
           D   T L  A   G    V  ++    + +     ++   + +H A     VE + +L+ 
Sbjct: 124 D-WHTPLFNACVSGSWDCVNLLLQHGASVQ----PESDLASPIHEAARRGHVECVNSLIA 178

Query: 113 NNPLARSLINEGDAKGNTPLHVLAA 137
                   I+   +   TPL++ A 
Sbjct: 179 YG----GNIDHKISHLGTPLYL-AC 198

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 79.1 bits (196), Expect = 5e-17
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 26/147 (17%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           A L   L   K L+K             TP+  A   G++  VNLLL+    A ++  + 
Sbjct: 99  ACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ--HGA-SVQPES 155

Query: 56  RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNP 115
              + +H AA +G    V ++I+      +   +     L+ A  + +            
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRA---------- 204

Query: 116 LARSLINEG-----DAKGNTPLHVLAA 137
             + L+  G         ++PLH    
Sbjct: 205 CVKKLLESGADVNQGKGQDSPLH-AVV 230

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 77.5 bits (192), Expect = 2e-16
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 20/144 (13%)

Query: 2   AALSKLLEIKKNLIK-----ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKD 55
           A +S   +    L++     + +    +PIH AA  G+   VN L+      + +     
Sbjct: 132 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIA--YGGNIDHKISH 189

Query: 56  RKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
              T L+LA        V+ ++    +            + LH  V +   E    L++ 
Sbjct: 190 LG-TPLYLACENQQRACVKKLLESGADVNQ----GKGQDSPLHAVVRTASEELACLLMDF 244

Query: 114 NPLARSLINEGDAKGNTPLHVLAA 137
                +     +A+G  P+  L  
Sbjct: 245 G----ADTQAKNAEGKRPVE-LVP 263

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 77.1 bits (191), Expect = 3e-16
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 26/146 (17%)

Query: 2   AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTA 60
                +  +   L+ +     W+P+H AA +G+  ++  L+   Q  + NI   D  ++ 
Sbjct: 40  RDFPGIRLLSNPLMGDAV-SDWSPMHEAAIHGHQLSLRNLIS--QGWAVNIITADH-VSP 95

Query: 61  LHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLAR 118
           LH A   G    V+ ++           V       L  A VS   +             
Sbjct: 96  LHEACLGGHLSCVKILLKHGAQVNG---VTADWHTPLFNACVSGSWD----------CVN 142

Query: 119 SLINEG-----DAKGNTPLHVLAAIR 139
            L+  G     ++   +P+H  AA R
Sbjct: 143 LLLQHGASVQPESDLASPIH-EAARR 167

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.1 bits (152), Expect = 4e-11
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 19/124 (15%)

Query: 16  KETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEA 75
           K+    G  P     + G       LL    S   + D     + +H AA  G    +  
Sbjct: 27  KQGGMDGSKPAGPRDFPG-----IRLL----SNPLMGDAVSDWSPMHEAAIHGHQLSLRN 77

Query: 76  IISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLH 133
           +IS+         +     + LH A +   +  +  LL++     + +N   A  +TPL 
Sbjct: 78  LISQGWAVNI---ITADHVSPLHEACLGGHLSCVKILLKHG----AQVNGVTADWHTPLF 130

Query: 134 VLAA 137
             A 
Sbjct: 131 -NAC 133

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 2   AALSKLLEIKKNLIK-----ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKD 55
           A  ++     K L++        +   +P+H      +     LL+  D  A     + +
Sbjct: 197 ACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLM--DFGADTQAKNAE 254

Query: 56  RKMTALHLAAGKG 68
            K   + L   + 
Sbjct: 255 GK-RPVELVPPES 266

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 10/111 (9%)

Query: 29  AAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVD 88
            + + ++   + L+   + + ++A  D K   +  +   G        +  NP   +   
Sbjct: 2   GSSHHHHHHSSGLVP--RGS-HMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD--A 56

Query: 89  NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIR 139
              W+ +H A +      L NL+         +N   A   +PLH  A + 
Sbjct: 57  VSDWSPMHEAAIHGHQLSLRNLISQG--WA--VNIITADHVSPLHE-ACLG 102

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 79.7 bits (198), Expect = 7e-18
 Identities = 33/146 (22%), Positives = 53/146 (36%), Gaps = 24/146 (16%)

Query: 2   AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK---- 57
                + +    L    D Y  TP+  A   G    ++ L+       N    + K    
Sbjct: 15  KDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLV------ENFDKLEDKDIEG 68

Query: 58  MTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN-- 113
            TAL  A       I E ++SK  N       D  G   L ++++    E    LLE+  
Sbjct: 69  STALIWAVKNNRLGIAEKLLSKGSNV---NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125

Query: 114 NPLARSLINEGDAKGNTPLHVLAAIR 139
           N      +N+ + +G TPL  +A+  
Sbjct: 126 N------VNDRNLEGETPLI-VASKY 144

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 75.5 bits (187), Expect = 2e-16
 Identities = 31/150 (20%), Positives = 49/150 (32%), Gaps = 28/150 (18%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           A +  +      L++      + D  G T + +A      G    LL   + ++ N  D 
Sbjct: 42  ACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS--KGSNVNTKDF 99

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVE--KLTNL 110
             K T L  +   G + +   ++    N       +  G   L  A    R E  K   L
Sbjct: 100 SGK-TPLMWSIIFGYSEMSYFLLEHGANVND---RNLEGETPLIVASKYGRSEIVKK--L 153

Query: 111 LEN--NPLARSLINEGDAKGNTPLHVLAAI 138
           LE   +      I+  D  G T     A I
Sbjct: 154 LELGAD------ISARDLTGLTAEA-SARI 176

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 65.9 bits (162), Expect = 5e-13
 Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 18/123 (14%)

Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
           D+ G               ++ L        N  D   + T L +A   G    ++ ++ 
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLR-------NYRDSYNR-TPLMVACMLGMENAIDKLVE 56

Query: 79  KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKGNTPLHVLA 136
              +  E  D  G   L +AV + R+     LL    N      +N  D  G TPL   +
Sbjct: 57  NFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN------VNTKDFSGKTPLM-WS 108

Query: 137 AIR 139
            I 
Sbjct: 109 IIF 111

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.5 bits (148), Expect = 4e-11
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           + +    E+   L++      + +  G TP+  A+ YG    V  LLE    A  +  D 
Sbjct: 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE--LGADISARDL 165

Query: 55  DRKMTALHLAAGKGDARIVEAIIS 78
               TA   A   G   +++    
Sbjct: 166 TGL-TAEASARIFGRQEVIKIFTE 188

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.0 bits (201), Expect = 1e-17
 Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 23/163 (14%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           A      +I + L++         + G TP   AA  G+   + L L   + A  N  D 
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS--KGADVNECDF 103

Query: 55  DRKMTALHLAAGKGDARIVEAIIS---------KNPECYELVDNRGWNFLHYAVVSFRVE 105
               TA   AA  G  + ++ +           K  E  E +   G   L  A     VE
Sbjct: 104 Y-GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162

Query: 106 KLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLV 148
            +  +L +   A   +N  D  G   L   A +  ++ DV+ +
Sbjct: 163 -VLKILLDEMGAD--VNACDNMGRNALI-HALLSSDDSDVEAI 201

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 80.6 bits (200), Expect = 2e-17
 Identities = 36/182 (19%), Positives = 71/182 (39%), Gaps = 32/182 (17%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLL-------ETDQSA 48
           AA++  +++ K  +       E D YG+T    AA YG    +  L           ++ 
Sbjct: 79  AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 138

Query: 49  SNIADKDRK-MTALHLAAGKGDARIVEAIISK---NPECYELVDNRGWNFLHYAVVSFRV 104
            +     +   TAL  AA KG   +++ ++ +   +       DN G N L +A++S   
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA---CDNMGRNALIHALLSSDD 195

Query: 105 EKLTN----LLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDV--DLVRKTQANYDAV 158
             +      LL++     + +N    +G TPL +  A+      +   L+ +     +  
Sbjct: 196 SDVEAITHLLLDHG----ADVNVRGERGKTPLIL--AVEKKHLGLVQRLLEQEHIEINDT 249

Query: 159 NK 160
           + 
Sbjct: 250 DS 251

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 75.6 bits (187), Expect = 1e-15
 Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 13/121 (10%)

Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEAIISK- 79
               +  A    +   V  LLE    A+ N  +++   T LH A       IVE ++   
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 80  -NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
            +P         G      A ++  V+ L   L       + +NE D  G T     AA+
Sbjct: 63  ADPVL---RKKNGATPFLLAAIAGSVKLLKLFLSKG----ADVNECDFYGFTAFM-EAAV 114

Query: 139 R 139
            
Sbjct: 115 Y 115

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 75.2 bits (186), Expect = 1e-15
 Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 23/152 (15%)

Query: 2   AALSKLLEIKKNLI-------KETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIAD 53
           A  ++ +++ + L+        + ++ GWTP+H A        V LLL     A   +  
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRK 69

Query: 54  KDRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLL 111
           K+   T   LAA  G  ++++  +SK  +       D  G+     A V  +V+ L  L 
Sbjct: 70  KNGA-TPFLLAAIAGSVKLLKLFLSKGADVNE---CDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 112 EN--NPLAR----SLINEGDAKGNTPLHVLAA 137
           +   N   R             G T L   AA
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALM-DAA 156

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.7 bits (177), Expect = 2e-14
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 16/133 (12%)

Query: 12  KNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDA 70
           K   +   + G T +  AA  G+   + +LL  D+  +++   D     AL  A    D 
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDD 195

Query: 71  R----IVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEG 124
                I   ++    +         RG   L  AV    +  +  LLE        IN+ 
Sbjct: 196 SDVEAITHLLLDHGADVNV---RGERGKTPLILAVEKKHLGLVQRLLEQE---HIEINDT 249

Query: 125 DAKGNTPLHVLAA 137
           D+ G T L  LA 
Sbjct: 250 DSDGKTALL-LAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.3 bits (163), Expect = 1e-12
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 15/110 (13%)

Query: 2   AALSKLLEIKKNLIKET-------DQYGWTPIHYAAYYGNYGT----VNLLLETDQSAS- 49
           AA    +E+ K L+ E        D  G   + +A    +        +LLL+    A  
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD--HGADV 212

Query: 50  NIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAV 99
           N+  +  K T L LA  K    +V+ ++ +        D+ G   L  AV
Sbjct: 213 NVRGERGK-TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 64.4 bits (158), Expect = 7e-12
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
           +    + G TP+  A    + G V  LLE +    N  D D K TAL LA      +I E
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK-TALLLAVELKLKKIAE 270

Query: 75  AIISK 79
            +  +
Sbjct: 271 LLCKR 275

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 76.6 bits (190), Expect = 1e-17
 Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 17/120 (14%)

Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEAII 77
            + G TP+H AA  G+   V  LL   + A  N   KD   T LHLAA  G A IV+ ++
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDGN-TPLHLAAKNGHAEIVKLLL 62

Query: 78  SK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKGNTPLH 133
           +K  +          G    H A  +   E +  L     +      +N      +   H
Sbjct: 63  AKGADVNA---RSKDGNTPEHLAKKNGHHEIVKLLDAKGAD------VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 15/99 (15%)

Query: 8   LEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTA 60
            E  K L+          + G TP+H AA  G+   V LLL   + A  N   KD   T 
Sbjct: 22  AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA--KGADVNARSKDGN-TP 78

Query: 61  LHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHY 97
            HLA   G   IV+ + +K  +            +  H+
Sbjct: 79  EHLAKKNGHHEIVKLLDAKGADV---NARSWGSSHHHHH 114

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 78.2 bits (194), Expect = 1e-17
 Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 27/146 (18%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA +   +  + L+         D  GWTP+H AA+ G+   V +LL+    A  N  D 
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK--NGADVNAVDH 78

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVE--KLTNL 110
               T L LAA  G   IVE ++    +       D  G   LH A +   +E  ++  L
Sbjct: 79  AGM-TPLRLAALFGHLEIVEVLLKNGADV---NANDMEGHTPLHLAAMFGHLEIVEV--L 132

Query: 111 LEN--NPLARSLINEGDAKGNTPLHV 134
           L+N  +      +N  D  G T   +
Sbjct: 133 LKNGAD------VNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 69.7 bits (172), Expect = 1e-14
 Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 18/123 (14%)

Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEAIISKN 80
               +  AA  G    V +L+     A  N  D     T LHLAA  G   IVE ++   
Sbjct: 14  LGKKLLEAARAGRDDEVRILMA--NGADVNAEDASGW-TPLHLAAFNGHLEIVEVLLKNG 70

Query: 81  PECYELVDNRGWNFLHYAVVSFRVE--KLTNLLEN--NPLARSLINEGDAKGNTPLHVLA 136
            +    VD+ G   L  A +   +E  ++  LL+N  +      +N  D +G+TPLH LA
Sbjct: 71  ADVNA-VDHAGMTPLRLAALFGHLEIVEV--LLKNGAD------VNANDMEGHTPLH-LA 120

Query: 137 AIR 139
           A+ 
Sbjct: 121 AMF 123

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 65.8 bits (162), Expect = 3e-13
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AAL   LEI + L+K        D  G TP+H AA +G+   V +LL+    A  N  DK
Sbjct: 87  AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK--NGADVNAQDK 144

Query: 55  DRKMTALHLAAGKGDARIVEAIISKN 80
             K TA  ++   G+  + E +   N
Sbjct: 145 FGK-TAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.4 bits (114), Expect = 9e-07
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 14/92 (15%)

Query: 50  NIADKDRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKL 107
           +          L  AA  G    V  +++   +       D  GW  LH A  +  +E +
Sbjct: 7   HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNA---EDASGWTPLHLAAFNGHLEIV 63

Query: 108 TNLLEN--NPLARSLINEGDAKGNTPLHVLAA 137
             LL+N  +      +N  D  G TPL  LAA
Sbjct: 64  EVLLKNGAD------VNAVDHAGMTPLR-LAA 88

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 80.6 bits (200), Expect = 2e-17
 Identities = 33/153 (21%), Positives = 49/153 (32%), Gaps = 27/153 (17%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           A  S   E    L++        +  G T +H A    N   V  L+E    A+ N  D 
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE--NGANINQPDN 104

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
           +     LH AA  G   I E +IS+  +      V++ G   L  A           + E
Sbjct: 105 E-GWIPLHAAASCGYLDIAEYLISQGAHV---GAVNSEGDTPLDIAE-------EEAMEE 153

Query: 113 NNPLARSLINEGDAKGNTPLHVLAAIRPNEFDV 145
              L ++ +N                R    D 
Sbjct: 154 ---LLQNEVNRQGVDIEAARK--EEERIMLRDA 181

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 79.9 bits (198), Expect = 4e-17
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 22/143 (15%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           A +   +++ K L++      + D  GW P+H AA  G       L+   Q A     + 
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS--QGAHVGAVNS 137

Query: 55  DRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENN 114
           +   T L +A  +    +++  +++     E         +      +      N     
Sbjct: 138 EGD-TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN----- 191

Query: 115 PLARSLINEGDAKGNTPLHVLAA 137
                        G T LHV AA
Sbjct: 192 ------DVRHAKSGGTALHV-AA 207

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 71.8 bits (177), Expect = 2e-14
 Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 19/138 (13%)

Query: 1   DAALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIAD 53
           +     L + ++ L           + G T +H AA  G    + LL++       NI D
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ--ARYDVNIKD 229

Query: 54  KDRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLL 111
            D   T LH AA  G       ++    +    E V+  G      A             
Sbjct: 230 YDGW-TPLHAAAHWGKEEACRILVENLCDM---EAVNKVGQTAFDVADEDILGYLEELQK 285

Query: 112 ENNPLARSLINEGDAKGN 129
           + N     L +E   K +
Sbjct: 286 KQN----LLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 69.8 bits (172), Expect = 8e-14
 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 17/127 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
           +K  D           + G+   +   +   +       K         A   GD   V 
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVV--KRK-KTKVKFDDGAVFLAACSSGDTEEVL 57

Query: 75  AIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKGNT 130
            ++ +  +       +  G   LH A +   V+ +  L+EN  N      IN+ D +G  
Sbjct: 58  RLLERGADINY---ANVDGLTALHQACIDDNVDMVKFLVENGAN------INQPDNEGWI 108

Query: 131 PLHVLAA 137
           PLH  AA
Sbjct: 109 PLHA-AA 114

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 19/139 (13%)

Query: 2   AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK---- 57
           A    + E+ +N +                         L       S   +  R     
Sbjct: 146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLN------SGHINDVRHAKSG 199

Query: 58  MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NP 115
            TALH+AA KG   +++ +I    +   + D  GW  LH A    + E    L+EN  + 
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCD- 257

Query: 116 LARSLINEGDAKGNTPLHV 134
                +   +  G T   V
Sbjct: 258 -----MEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.1 bits (157), Expect = 9e-12
 Identities = 30/142 (21%), Positives = 42/142 (29%), Gaps = 20/142 (14%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           AA    L+I + LI         +  G TP+  A        +   +       N    D
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV-------NRQGVD 165

Query: 56  RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNP 115
               A             + + S +          G   LH A      E L  L++   
Sbjct: 166 -IEAARKEEERIMLRDARQWLNSGHINDVR-HAKSGGTALHVAAAKGYTEVLKLLIQAR- 222

Query: 116 LARSLINEGDAKGNTPLHVLAA 137
                +N  D  G TPLH  AA
Sbjct: 223 -YD--VNIKDYDGWTPLHA-AA 240

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 31/162 (19%)

Query: 2   AALSKLLEIKKNLIK-----ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKD 55
           AA     +    L++       D+ G T + + A  G+   V LL E    A  +  D  
Sbjct: 52  AARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMR 109

Query: 56  RKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYA-------VVSF---- 102
             +TALH+AAG     +VEA++    +    E+ D RG   L  A               
Sbjct: 110 GGLTALHMAAGYVRPEVVEALVELGADI---EVEDERGLTALELAREILKTTPKGNPMQF 166

Query: 103 ----RVEKLTNLLENNPLARS---LINEGDAKGNTPLHVLAA 137
                +EK+ N+LE      +    I E   KG    +++  
Sbjct: 167 GRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRW 208

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 72.6 bits (179), Expect = 5e-15
 Identities = 34/179 (18%), Positives = 56/179 (31%), Gaps = 15/179 (8%)

Query: 2   AALSKLLEIKKNLIK---ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRK 57
                             +      TP   AA   +   ++ LLE       +  D++ +
Sbjct: 22  EWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGR 78

Query: 58  MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLA 117
            TAL   AG G  + V  +     +        G   LH A    R E +  L+E    A
Sbjct: 79  -TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG--A 135

Query: 118 RSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPEL 176
              I   D +G T L  LA             +         +++++V     + Y E+
Sbjct: 136 D--IEVEDERGLTALE-LAREILKTTPKGNPMQFGRRIGL--EKVINVLEGQVFEYAEV 189

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 19/133 (14%)

Query: 9   EIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKG 68
           E+ K +   T   G          G+  +          A+++  +    T    AA K 
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI---AADVVSEYE--TPWWTAARKA 56

Query: 69  DARIVEAIISK-NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGD 125
           D + +  ++   + +    VD  G   L +       + +  L E   +      ++  D
Sbjct: 57  DEQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAEAGAD------LDHRD 107

Query: 126 AK-GNTPLHVLAA 137
            + G T LH +AA
Sbjct: 108 MRGGLTALH-MAA 119

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 9/84 (10%), Positives = 17/84 (20%), Gaps = 20/84 (23%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLE-------------------TDQSASNIADKD 55
           I+  D+ G T +  A            ++                          I +K 
Sbjct: 137 IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKR 196

Query: 56  -RKMTALHLAAGKGDARIVEAIIS 78
            +     +L   K           
Sbjct: 197 GKGKDVEYLVRWKDGGDCEWVKGV 220

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 10/57 (17%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIAD---KDRKMTALHLAAGKG 68
           I E    G    +   +        +         ++A+   KD +   L  A  + 
Sbjct: 192 IVEKRGKGKDVEYLVRWKDGGDCEWVKG------VHVAEDVAKDYE-DGLEYAVAES 241

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 77.8 bits (193), Expect = 2e-17
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 17/126 (13%)

Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD-RKMTALHLAAGKGDARIVEAII 77
           +      +  AA  G+  TV  L      + N  D + R+ T LH AAG     +VE ++
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCT--VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 78  SK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKGNTPLH 133
               +       D  G   LH A      E    L+++         +N  D    TPLH
Sbjct: 63  QHGADVHA---KDKGGLVPLHNACSYGHYEVAELLVKHGAV------VNVADLWKFTPLH 113

Query: 134 VLAAIR 139
             AA +
Sbjct: 114 -EAAAK 118

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 76.3 bits (189), Expect = 7e-17
 Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 30/148 (20%)

Query: 2   AALSKLLEIKKNLI-------KETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADK 54
           AA +  +E  K L        ++ +    TP+H+AA Y     V  LL       + AD 
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL------QHGADV 68

Query: 55  DRK----MTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLT 108
             K    +  LH A   G   + E ++            D   +  LH A    + E   
Sbjct: 69  HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV---ADLWKFTPLHEAAAKGKYEICK 125

Query: 109 NLLEN--NPLARSLINEGDAKGNTPLHV 134
            LL++  +        + +  GNTPL +
Sbjct: 126 LLLQHGAD------PTKKNRDGNTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 69.3 bits (171), Expect = 2e-14
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 15/106 (14%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA    + + + L++        D+ G  P+H A  YG+Y    LL++    A  N+AD 
Sbjct: 49  AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK--HGAVVNVADL 106

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYA 98
            +  T LH AA KG   I + ++    +P      +  G   L   
Sbjct: 107 WKF-TPLHEAAAKGKYEICKLLLQHGADP---TKKNRDGNTPLDLV 148

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 61.3 bits (150), Expect = 1e-11
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 11/85 (12%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           A      E+ + L+K        D + +TP+H AA  G Y    LLL+    A     ++
Sbjct: 82  ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ--HGADPTKKNR 139

Query: 55  DRKMTALHLAAGKGDARIVEAIISK 79
           D   T L L    GD  I + +   
Sbjct: 140 DGN-TPLDLVK-DGDTDIQDLLRGD 162

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 76.3 bits (189), Expect = 3e-17
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 19/135 (14%)

Query: 16  KETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVE 74
             T+  G T +H A+  G+  +V  LL+    +  N+ D     T LH A   G  ++VE
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGW-TPLHEACNHGHLKVVE 60

Query: 75  AIISK--NPECYELVDNRGWNFLHYAVVSFRVE--KLTNLLENNPLARSLINEGDAKGNT 130
            ++              +  + LH A  +  V+  KL  LL     A    N  +  G  
Sbjct: 61  LLLQHKALVNT---TGYQNDSPLHDAAKNGHVDIVKL--LLSYG--AS--RNAVNIFGLR 111

Query: 131 PLHVLAAIRPNEFDV 145
           P+        +   +
Sbjct: 112 PVDY--TDDESMKSL 124

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 71.3 bits (176), Expect = 2e-15
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 15/100 (15%)

Query: 8   LEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTA 60
           +   + L++        D  GWTP+H A  +G+   V LLL+    A  N        + 
Sbjct: 23  IPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ--HKALVNTTGYQN-DSP 79

Query: 61  LHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYA 98
           LH AA  G   IV+ ++S   +      V+  G   + Y 
Sbjct: 80  LHDAAKNGHVDIVKLLLSYGASR---NAVNIFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 8   LEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTA 60
           L++ + L++       T     +P+H AA  G+   V LLL     AS N  +       
Sbjct: 56  LKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS--YGASRNAVNIFGL-RP 112

Query: 61  LHLAAGKGDARIVEAIIS 78
           +     +    ++     
Sbjct: 113 VDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 52.8 bits (128), Expect = 6e-09
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 14/92 (15%)

Query: 50  NIADKDRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVE-- 105
           +     R  T LH+A+ KGD   VE ++    +P      D+ GW  LH A     ++  
Sbjct: 3   DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVV 59

Query: 106 KLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
           +L  LL++     +L+N    + ++PLH  AA
Sbjct: 60  EL--LLQHK----ALVNTTGYQNDSPLH-DAA 84

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 38.6 bits (91), Expect = 7e-04
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 1   DAALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLE 43
           DAA +  ++I K L+         + +G  P+ Y         + L  +
Sbjct: 82  DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 75.2 bits (186), Expect = 7e-17
 Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 16/127 (12%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIV 73
           I          +  AA  G   TV  LLE    A  N  ++      + +    G A++ 
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLE--AGADPNALNRF-GRRPIQVMM-MGSAQVA 60

Query: 74  EAIISK--NPECYELVDNRGWNF-LHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNT 130
           E ++     P C    D       +H A     ++ L  L      AR  ++  DA G  
Sbjct: 61  ELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRAG--AR--LDVCDAWGRL 113

Query: 131 PLHVLAA 137
           P+  LA 
Sbjct: 114 PVD-LAE 119

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 8   LEIKKNLIK------ETDQYGWT-PIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMT 59
            ++ + L+         D    T P+H AA  G   T+ +L      A  ++ D      
Sbjct: 57  AQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR--AGARLDVCDAW-GRL 113

Query: 60  ALHLAAGKGDARIVEAIISK 79
            + LA  +G   I   + + 
Sbjct: 114 PVDLAEEQGHRDIARYLHAA 133

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 16/151 (10%)

Query: 1   DAALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIAD 53
           D++L    ++ + +I         +  G T +H A   G+   V  L++     + N AD
Sbjct: 43  DSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ--FGVNVNAAD 100

Query: 54  KDRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLL 111
            D   T LH AA   + ++ + ++            D +        +     +    L 
Sbjct: 101 SDGW-TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159

Query: 112 ENNPLARSLINEGDAKGNTPLHVLAAIRPNE 142
                 +  +   +      L        +E
Sbjct: 160 GVQ--EK--MGIMNKGVIYALWDYEPQNDDE 186

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 17/123 (13%)

Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
           +  G   +          T +  +        +      +  L  ++ +G+  +V+ II 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIA--HGM-RVKFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 79  K--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKGNTPLHV 134
           +  +P    L ++ G   LH AV +   E +  L++   N      +N  D+ G TPLH 
Sbjct: 59  EVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN------VNAADSDGWTPLH- 108

Query: 135 LAA 137
            AA
Sbjct: 109 CAA 111

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 72.6 bits (179), Expect = 6e-15
 Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 25/146 (17%)

Query: 2   AALSKLLEIKKNLI-----KETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDR 56
              + L +     I      + +      +  ++  G +  V  ++        + D   
Sbjct: 12  GKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRII------YEVDDPSL 65

Query: 57  K----MTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNL 110
                +TALH A   G   IV+ ++    N       D+ GW  LH A     V+    L
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA---ADSDGWTPLHCAASCNNVQVCKFL 122

Query: 111 LEN--NPLARSLINEGDAKGNTPLHV 134
           +E+     A       D +       
Sbjct: 123 VESGAAVFAM---TYSDMQTAADKCE 145

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 70.7 bits (174), Expect = 3e-14
 Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 19/146 (13%)

Query: 8   LEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMT 59
            EI K L++        D  GWTP+H AA   N      L+E      A   +D      
Sbjct: 83  TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA-A 141

Query: 60  ALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKL------TNLLE- 112
                  +G  +  + +     +   +++      L         E          ++  
Sbjct: 142 DKCEEMEEGYTQCSQFLYGVQEKM-GIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHR 200

Query: 113 --NNPLARSLINEGDAKGNTPLHVLA 136
              + +        D +G  P ++L 
Sbjct: 201 EDEDEIEWWWARLNDKEGYVPRNLLG 226

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 75.5 bits (187), Expect = 1e-16
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 16/135 (11%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLA 64
           +LL  +       +++G T +     +G+      LL+  Q AS N+ D     + +H A
Sbjct: 20  RLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLK--QGASPNVQDTSGT-SPVHDA 75

Query: 65  AGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLIN 122
           A  G    ++ ++    +       D  G   +H AV       + + L     A S ++
Sbjct: 76  ARTGFLDTLKVLVEHGADVNV---PDGTGALPIHLAVQEGHTA-VVSFL----AAESDLH 127

Query: 123 EGDAKGNTPLHVLAA 137
             DA+G TPL  LA 
Sbjct: 128 RRDARGLTPLE-LAL 141

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 69.7 bits (172), Expect = 1e-14
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 12/118 (10%)

Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK-- 79
               +  AA  G+   V  LL  +    +  ++  K TAL +    G   I   ++ +  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGK-TALQVMM-FGSTAIALELLKQGA 59

Query: 80  NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
           +P    + D  G + +H A  +  ++ L  L+E+     + +N  D  G  P+H LA 
Sbjct: 60  SP---NVQDTSGTSPVHDAARTGFLDTLKVLVEHG----ADVNVPDGTGALPIH-LAV 109

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 62.8 bits (154), Expect = 3e-12
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           AA +  L+  K L++        D  G  PIH A   G+   V+ L    +S  +  D  
Sbjct: 75  AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDAR 132

Query: 56  RKMTALHLAAGKGDARIVEAIIS 78
              T L LA  +G   +V+ +  
Sbjct: 133 GL-TPLELALQRGAQDLVDILQG 154

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 75.1 bits (186), Expect = 2e-16
 Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 19/142 (13%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA    LE   +L++        + +G T +      GN      LL   + A+ ++ D+
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLL--RGANPDLKDR 68

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
                 +H AA  G    ++ ++    +     + DN G   LH A     +  +  L++
Sbjct: 69  TGF-AVIHDAARAGFLDTLQTLLEFQADV---NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124

Query: 113 NNPLARSLINEGDAKGNTPLHV 134
           +   A + +   + KG+T   +
Sbjct: 125 HT--ASN-VGHRNHKGDTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 72.4 bits (179), Expect = 1e-15
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 8   LEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTA 60
            EI + L+         D+ G+  IH AA  G   T+  LLE    A  NI D +     
Sbjct: 50  PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE--FQADVNIEDNEGN-LP 106

Query: 61  LHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAV 99
           LHLAA +G  R+VE ++          +++G      A 
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 68.2 bits (168), Expect = 4e-14
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 25/124 (20%)

Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK----MTALHLAAGKGDARIVEAII 77
               +  AA  G+   +  LL       N  + + +     TAL +    G+  I   ++
Sbjct: 5   WGNELASAAARGDLEQLTSLL------QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL 57

Query: 78  SK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKGNTPLH 133
            +  NP   +L D  G+  +H A  +  ++ L  LLE   +      +N  D +GN PLH
Sbjct: 58  LRGANP---DLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD------VNIEDNEGNLPLH 108

Query: 134 VLAA 137
            LAA
Sbjct: 109 -LAA 111

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 66.3 bits (163), Expect = 2e-13
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           AA +  L+  + L++        D  G  P+H AA  G+   V  L++   +ASN+  ++
Sbjct: 77  AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK--HTASNVGHRN 134

Query: 56  RK-MTALHLAAGKGDARIVEAIISK 79
            K  TA  LA   G   +V  + + 
Sbjct: 135 HKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.1 bits (108), Expect = 5e-06
 Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 23/91 (25%)

Query: 55  DRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYA------VVSFRVEKLT 108
           +     L  AA +GD   + +++  N       +  G   L         +         
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKLGNPEIARR------ 55

Query: 109 NLLEN--NPLARSLINEGDAKGNTPLHVLAA 137
            LL    N       +  D  G   +H  AA
Sbjct: 56  -LLLRGAN------PDLKDRTGFAVIH-DAA 78

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 75.6 bits (187), Expect = 2e-16
 Identities = 31/140 (22%), Positives = 45/140 (32%), Gaps = 13/140 (9%)

Query: 2   AALSKLLEIKKNLIK---ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRK 57
                             +      TP   AA   +   ++ LLE       +  D++ +
Sbjct: 21  EWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGR 77

Query: 58  MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLA 117
            TAL   AG G  + V  +     +        G   LH A    R E +  L+E    A
Sbjct: 78  -TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG--A 134

Query: 118 RSLINEGDAKGNTPLHVLAA 137
              I   D +G T L  LA 
Sbjct: 135 D--IEVEDERGLTALE-LAR 151

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 72.9 bits (180), Expect = 2e-15
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 2   AALSKLLEIKKNLIK-----ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKD 55
           AA     +    L++       D+ G T + + A  G+   V LL E    A  +  D  
Sbjct: 51  AARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMR 108

Query: 56  RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
             +TALH+AAG     +VEA++    +  E+ D RG   L  A    +     N ++ 
Sbjct: 109 GGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 71.4 bits (176), Expect = 5e-15
 Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 19/133 (14%)

Query: 9   EIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKG 68
           E+ K +   T   G          G+  +          A+++  +    T    AA K 
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSY---IAADVVSEYE--TPWWTAARKA 55

Query: 69  DARIVEAIISK-NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGD 125
           D + +  ++   + +    VD  G   L +       + +  L E   +      ++  D
Sbjct: 56  DEQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAEAGAD------LDHRD 106

Query: 126 AK-GNTPLHVLAA 137
            + G T LH +AA
Sbjct: 107 MRGGLTALH-MAA 118

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.4 bits (186), Expect = 5e-16
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 22/145 (15%)

Query: 1   DAALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIAD 53
           DAAL+  LE+ +  +K      + ++ G T +H A    NY  V+ L+     A+ N  D
Sbjct: 27  DAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT--AGANVNSPD 84

Query: 54  KDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFR-----VEKLT 108
                T LH AA   D  I  A++      +    + G                    L 
Sbjct: 85  SHGW-TPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA 143

Query: 109 NLLENNPLARSLINEGDAKGNTPLH 133
           ++ ++       +   ++     L 
Sbjct: 144 DVEQS-------MGLMNSGAVYALW 161

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 28/152 (18%), Positives = 42/152 (27%), Gaps = 32/152 (21%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           A       I   LI         D +GWTP+H AA   +      L++    A  I    
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQ--HGA-AIFATT 117

Query: 56  RK--MTALHLAAG--KGDARIVEAIISKNPECYELVDNRGWNFLHYA------VVSFRVE 105
                TA        +G A     +     +   L+++     L          +SFR  
Sbjct: 118 LSDGATAFEKCDPYREGYADCATYLADVE-QSMGLMNSGAVYALWDYSAEFGDELSFREG 176

Query: 106 KLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
           +              +   D    T     AA
Sbjct: 177 ESVT-----------VLRRDGPEETDWW-WAA 196

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 15/169 (8%)

Query: 12  KNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDA 70
               +         +  AA  G    V   ++  +    +  +++  +TALH A    + 
Sbjct: 11  PRKARRARLNPLVLLLDAALTGELEVVQQAVK--EMNDPSQPNEEG-ITALHNAICGANY 67

Query: 71  RIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAK- 127
            IV+ +I+   N       D+ GW  LH A           L+++     + I       
Sbjct: 68  SIVDFLITAGANVNS---PDSHGWTPLHCAASCNDTVICMALVQHG----AAIFATTLSD 120

Query: 128 GNTPLHVLAAIRPNEFD-VDLVRKTQANYDAVNKQIVSVRHIFNYGYPE 175
           G T        R    D    +   + +   +N   V     ++  + +
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD 169

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 75.6 bits (186), Expect = 7e-16
 Identities = 38/163 (23%), Positives = 59/163 (36%), Gaps = 29/163 (17%)

Query: 7   LLEIKKNLI---KETDQYGWTPIHYAAYYGNYG---TVNLLLETDQSA--------SNIA 52
           LL  KK L          G T +  A    + G   T+ +LL+  +          S   
Sbjct: 28  LLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87

Query: 53  DKDRK-MTALHLAAGKGDARIVEAIISK-------------NPECYELVDNRGWNFLHYA 98
           D   +  TALH+A  +     VE ++ K              P+        G   L  A
Sbjct: 88  DVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA 147

Query: 99  VVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPN 141
             + +   + + L  N   ++ +   D++GNT LH L AI  N
Sbjct: 148 ACTNQPH-IVHYLTENGHKQADLRRQDSRGNTVLHALVAIADN 189

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 70.6 bits (173), Expect = 4e-14
 Identities = 29/149 (19%), Positives = 44/149 (29%), Gaps = 27/149 (18%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLL-------ETDQSASNIADKDRKM-----TALH 62
            ++    G T +H A        V LL+          +        +          L 
Sbjct: 86  FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLS 145

Query: 63  LAAGKGDARIVEAIISKNPECYEL--VDNRGWNFLHYAVVS---------FRVEKLTNLL 111
           LAA      IV  +     +  +L   D+RG   LH  V           F  +    LL
Sbjct: 146 LAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLL 205

Query: 112 E---NNPLARSLINEGDAKGNTPLHVLAA 137
                     +L    +  G +PL  +AA
Sbjct: 206 IKCAKLFPDTNLEALLNNDGLSPLM-MAA 233

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 16/115 (13%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGD---- 69
                 +G  P+  AA       V+ L E     +++  +D +  T LH      D    
Sbjct: 133 EGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRE 192

Query: 70  -----ARIVEAIISK------NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
                 ++ + ++ K      +     L++N G + L  A  + ++    +++  
Sbjct: 193 NTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 22/146 (15%), Positives = 39/146 (26%), Gaps = 30/146 (20%)

Query: 21  YGWTPIHYAAYYGNYGTVNLLLETDQSA-SNIADKDRKM-----TALHLAA---GKGDAR 71
           +    +      G+   +  LL    +    + D++ +      T L  A      G   
Sbjct: 4   FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND 63

Query: 72  IVEAIISKNPECYEL----------VDNRGWNFLHYAVVSFRVEKLTNLLEN-------- 113
            +  ++    +   +          V  RG   LH A+       +  L+E         
Sbjct: 64  TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123

Query: 114 --NPLARSLINEGDAKGNTPLHVLAA 137
                           G  PL  LAA
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLS-LAA 148

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 11  KKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLE 43
             NL    +  G +P+  AA  G  G    ++ 
Sbjct: 214 DTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 71.6 bits (177), Expect = 1e-15
 Identities = 45/123 (36%), Positives = 58/123 (47%), Gaps = 22/123 (17%)

Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEAIISK- 79
           G TP+H AA  G+   V LLLE    A  N  DK+ + T LHLAA  G   +V+ ++   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAG 58

Query: 80  -NPECYELVDNRGWNFLHYAVVSFRVE--KLTNLLEN--NPLARSLINEGDAKGNTPLHV 134
            +       D  G   LH A  +  +E  KL  LLE   +      +N  D  G TPLH 
Sbjct: 59  ADVNA---KDKNGRTPLHLAARNGHLEVVKL--LLEAGAD------VNAKDKNGRTPLH- 106

Query: 135 LAA 137
           LAA
Sbjct: 107 LAA 109

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 68.1 bits (168), Expect = 2e-14
 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA +  LE+ K L++        D+ G TP+H AA  G+   V LLLE    A  N  DK
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDK 66

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYA 98
           + + T LHLAA  G   +V+ ++    +       D  G   LH A
Sbjct: 67  NGR-TPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 62.0 bits (152), Expect = 3e-12
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 8   LEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTA 60
           LE+ K L++        D+ G TP+H AA  G+   V LLLE    A  N  DK+ + T 
Sbjct: 48  LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGR-TP 104

Query: 61  LHLAAGKGDARIVEAIISK 79
           LHLAA  G   +V+ ++  
Sbjct: 105 LHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.6 bits (99), Expect = 4e-05
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLE 43
           AA +  LE+ K L++        D+ G TP+H AA  G+   V LLLE
Sbjct: 75  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 71.3 bits (176), Expect = 1e-15
 Identities = 24/124 (19%), Positives = 34/124 (27%), Gaps = 27/124 (21%)

Query: 21  YGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK----MTALHLAAGKGDARIVEAI 76
                  +A   G+   V   +      +   D +R        LH AA  G   I+E +
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYV------AKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

Query: 77  ISK--NPECYELVDNRGWNFLHYAVVSFRVE--KLTNLLEN--NPLARSLINEGDAKGNT 130
           + K  +       D      L  AV    V   KL  LL    +             G T
Sbjct: 60  LLKGADINA---PDKHHITPLLSAVYEGHVSCVKL--LLSKGAD------KTVKGPDGLT 108

Query: 131 PLHV 134
               
Sbjct: 109 AFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 69.7 bits (172), Expect = 5e-15
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 21/103 (20%)

Query: 8   LEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK---- 57
           L+  K+ +        T + G  P+HYAA  G    +  LL         AD +      
Sbjct: 20  LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL------LKGADINAPDKHH 73

Query: 58  MTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYA 98
           +T L  A  +G    V+ ++SK  +     +    G       
Sbjct: 74  ITPLLSAVYEGHVSCVKLLLSKGADK---TVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 58.6 bits (143), Expect = 4e-11
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 16/77 (20%)

Query: 8   LEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK---- 57
           LEI + L+         D++  TP+  A Y G+   V LLL      S  ADK  K    
Sbjct: 53  LEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL------SKGADKTVKGPDG 106

Query: 58  MTALHLAAGKGDARIVE 74
           +TA      +    +++
Sbjct: 107 LTAFEATDNQAIKALLQ 123

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 75.5 bits (185), Expect = 1e-15
 Identities = 38/216 (17%), Positives = 70/216 (32%), Gaps = 60/216 (27%)

Query: 2   AALSKLLEIKKNLI-------KETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADK 54
           +  S L E+               D++G TP+H+     N   V  L++     SN    
Sbjct: 104 SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG---SNRLYG 160

Query: 55  DRK-MTALHLAAGKG---DARIVEAIISKNPECYELVDNRGWNFLHYAVVS--------- 101
           D    + L  A       D+   EA++     C  L D+     LH+ +++         
Sbjct: 161 DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAA 220

Query: 102 --FRVEKLTNLL----------------------------------ENNPLARSLINEGD 125
             + ++ L   +                                  +   +  +++N  D
Sbjct: 221 AKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD 280

Query: 126 AKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ 161
           + G+T L+ +AA   N   VD +    A+    NK 
Sbjct: 281 SNGDTCLN-IAARLGNISIVDALLDYGADPFIANKS 315

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 64.7 bits (157), Expect = 6e-12
 Identities = 17/145 (11%), Positives = 37/145 (25%), Gaps = 18/145 (12%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGN----------YGTVNLLLETDQSASNIADKD 55
            LL+     +   D    T +H+                Y  + +     +    I    
Sbjct: 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244

Query: 56  RKMTALHLAAGKGDARIVEAIISKNPECYELV---DNRGWNFLHYAVVSFRVEKLTNLLE 112
            +  +            +   +        ++   D+ G   L+ A     +  +  LL+
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 304

Query: 113 NNPLARSLINEGDAKGNTPLHVLAA 137
               A       +  G  P+    A
Sbjct: 305 YG--AD--PFIANKSGLRPVD-FGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 59.3 bits (143), Expect = 4e-10
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 2   AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTA 60
                L  I  N++   D  G T ++ AA  GN   V+ LL+    A   IA+K      
Sbjct: 263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD--YGADPFIANKSGL-RP 319

Query: 61  LHLAAG 66
           +   AG
Sbjct: 320 VDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.1 bits (127), Expect = 4e-08
 Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 6/128 (4%)

Query: 17  ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAI 76
           E        +    +      +   L  D S  N           H++       + +A 
Sbjct: 58  EQKMKLEAFLQRLLF-PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF 116

Query: 77  ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLA 136
            +        VD  G   LH+      +E + +L+++   +      GD  G + L   A
Sbjct: 117 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG--SN--RLYGDNMGESCLV-KA 171

Query: 137 AIRPNEFD 144
               N +D
Sbjct: 172 VKSVNNYD 179

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.1 bits (178), Expect = 1e-15
 Identities = 30/146 (20%), Positives = 47/146 (32%), Gaps = 16/146 (10%)

Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEAII 77
            +     +  AA  G    V  LLE    A+ N  +       + +    G AR+ E ++
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLE--AGANPNAPNSY-GRRPIQVMM-MGSARVAELLL 64

Query: 78  SK--NPECYELVDNRGWNF-LHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHV 134
                P C    D       +H A     ++ L  L      AR  ++  DA G  P+  
Sbjct: 65  LHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRAG--AR--LDVRDAWGRLPVD- 116

Query: 135 LAAIRPNEFDVDLVRKTQANYDAVNK 160
           LA    +      +R         N 
Sbjct: 117 LAEELGHRDVARYLRAAAGGTRGSNH 142

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 70.6 bits (174), Expect = 6e-15
 Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 26/146 (17%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA    +E  + L++        + YG  PI      G+     LLL     A  N AD 
Sbjct: 19  AAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL--HGAEPNCADP 75

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
                 +H AA +G    +  +       +     D  G   +  A      +       
Sbjct: 76  ATLTRPVHDAAREGFLDTLVVLHRAGARLDV---RDAWGRLPVDLAEELGHRD------- 125

Query: 113 NNPLARSLINEG-DAKGNTPLHVLAA 137
              +AR L       +G+    + AA
Sbjct: 126 ---VARYLRAAAGGTRGSNHARIDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 56.3 bits (137), Expect = 5e-10
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 13/80 (16%)

Query: 1   DAALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADK 54
           DAA    L+    L +        D +G  P+  A   G+      L       +     
Sbjct: 84  DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR------AAAGGT 137

Query: 55  DRKMTALHLAAGKGDARIVE 74
                   + A +G + I +
Sbjct: 138 RGS-NHARIDAAEGPSDIPD 156

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 73.3 bits (180), Expect = 4e-15
 Identities = 33/166 (19%), Positives = 55/166 (33%), Gaps = 28/166 (16%)

Query: 4   LSKLLEIKKNL---IKETDQYGWTPIHYAAYYGNYG---TVNLLLETDQSA--------S 49
           L  L    K L          G T +  A      G    +  LL+ D+ +        +
Sbjct: 22  LEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81

Query: 50  NIADKDRK-MTALHLAAGKGDARIVEAIISK------------NPECYELVDNRGWNFLH 96
              D+  +  +ALH+A  K   + V+ ++                +        G   L 
Sbjct: 82  QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLS 141

Query: 97  YAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNE 142
            A  + + + +   L  NP   + +   D+ GNT LH L  I  N 
Sbjct: 142 LAACTKQWD-VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS 186

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 24/123 (19%)

Query: 16  KETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVE 74
                +G  P+  AA    +  V  LLE     +++   D    T LH      D     
Sbjct: 130 GTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD----- 184

Query: 75  AIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHV 134
                        ++   + L   +    ++    L         L    + +G TPL  
Sbjct: 185 -------------NSPENSALVIHMYDGLLQMGARLCPTVQ----LEEISNHQGLTPLK- 226

Query: 135 LAA 137
           LAA
Sbjct: 227 LAA 229

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
           +   +    + +    Y G       L  T Q    I++    +T L LAA +G   I  
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLE-EISNHQ-GLTPLKLAAKEGKIEIFR 238

Query: 75  AIISKN 80
            I+ + 
Sbjct: 239 HILQRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 29/145 (20%)

Query: 21  YGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRK----MTALHLAA---GKGDAR 71
           +    +      G    +  LLE     S         +     T L  A      G   
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60

Query: 72  IVEAIISKNPECYEL----------VDNRGWNFLHYAVVSFRVEKLTNLLEN-------- 113
            +  ++  + +                 +G + LH A+    ++ +  L+EN        
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 114 -NPLARSLINEGDAKGNTPLHVLAA 137
                +         G  PL  LAA
Sbjct: 121 CGRFFQKHQGTCFYFGELPLS-LAA 144

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLE 43
                LL++   L         ++  G TP+  AA  G       +L+
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 72.9 bits (179), Expect = 7e-15
 Identities = 35/176 (19%), Positives = 59/176 (33%), Gaps = 33/176 (18%)

Query: 2   AALSKLLEIKKNLIK-------ETDQYGWTPIHYAAYYGNYG---TVNLLLETDQSA--- 48
             L  LL   +   K       +  + G T +  A    + G   T+ LLL+  +     
Sbjct: 27  QELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86

Query: 49  -----SNIADKDRK-MTALHLAAGKGDARIVEAIISK-------------NPECYELVDN 89
                ++  D   K  TALH+A  + +  +V  ++                         
Sbjct: 87  KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFY 146

Query: 90  RGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDV 145
            G   L  A  + ++  +   L  N    + I+  D+ GNT LH L  +  N  D 
Sbjct: 147 FGELPLSLAACTNQLA-IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDN 201

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 26/143 (18%), Positives = 45/143 (31%), Gaps = 28/143 (19%)

Query: 11  KKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGD 69
           KK   +    +G  P+  AA       V  LL+     ++I+ +D    T LH      D
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196

Query: 70  ARIVE---------------AIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENN 114
             +                 A +    +  E+ + +G   L  A  S ++  L  +L+  
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR- 255

Query: 115 PLARSLINEGDAKGNTPLHVLAA 137
                     +       H  AA
Sbjct: 256 ----------EIHEPECRH-AAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 70.6 bits (173), Expect = 4e-14
 Identities = 31/149 (20%), Positives = 44/149 (29%), Gaps = 27/149 (18%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLE------------TDQSASNIADKDRKMTALH 62
             ++   G T +H A    N   V LL+E              +              L 
Sbjct: 94  YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLS 153

Query: 63  LAAGKGDARIVEAIISKNPEC--YELVDNRGWNFLHYAV---------VSFRVEKLTNLL 111
           LAA      IV+ ++  + +       D+ G   LH  V           F       +L
Sbjct: 154 LAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL 213

Query: 112 ENNPL---ARSLINEGDAKGNTPLHVLAA 137
                      L    + KG TPL  LAA
Sbjct: 214 ILGAKLHPTLKLEEITNRKGLTPLA-LAA 241

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 30/152 (19%), Positives = 46/152 (30%), Gaps = 30/152 (19%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLET-DQSASNIADKDRK-----MTALHLA---A 65
            K    Y    I  A    N   +  LL    +S   + D + K      T L  A    
Sbjct: 6   EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNL 65

Query: 66  GKGDARIVEAIISKNPEC----------YELVDNRGWNFLHYAVVSFRVEKLTNLLEN-- 113
             G    +  ++    +           Y     +G   LH A+    +  +T L+EN  
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 114 --------NPLARSLINEGDAKGNTPLHVLAA 137
                   +   ++    G   G  PL  LAA
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLS-LAA 156

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 55.2 bits (133), Expect = 7e-09
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 15/73 (20%)

Query: 2   AALSKLLEIKKNLIKE------TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           +  +++L +   L         T++ G TP+  AA  G  G +  +L+ +        + 
Sbjct: 207 SMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE------IHEP 260

Query: 56  RKMTALHLAAGKG 68
                 H AA   
Sbjct: 261 ---ECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 18/110 (16%)

Query: 47  SASNIADKDRKMTALHLAAGKGDARIVEAII------SKNPECYELVD-NRGWNFLHYAV 99
           SA     +     ++  A  + + + +E+++       K     E  D   G   L  A+
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 100 VSFR------VEKLTNLLENNPLARSLIN----EGDAKGNTPLHVLAAIR 139
           ++        +  L ++       +  +N    +   KG T LH +A  R
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALH-IAIER 111

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 68.6 bits (169), Expect = 2e-14
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 14/119 (11%)

Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEAIISKN 80
               +  AA  G    V +L+     A  N  D+    T L+LA   G   IVE ++   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMA--NGADVNAKDEYGL-TPLYLATAHGHLEIVEVLLKNG 70

Query: 81  PECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKGNTPLHVLAA 137
            +    VD  G+  LH A     +E    LL++  +      +N  D  G T    ++ 
Sbjct: 71  ADVNA-VDAIGFTPLHLAAFIGHLEIAEVLLKHGAD------VNAQDKFGKTAFD-ISI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           AA +   +  + L+         D+YG TP++ A  +G+   V +LL+    A  N  D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK--NGADVNAVDA 78

Query: 55  DRKMTALHLAAGKGDARIVEAIISK--NPECYELVDNRGWNFLHYAV 99
               T LHLAA  G   I E ++    +       D  G      ++
Sbjct: 79  IGF-TPLHLAAFIGHLEIAEVLLKHGADVNA---QDKFGKTAFDISI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 64.7 bits (159), Expect = 4e-13
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADK 54
           A     LEI + L+K        D  G+TP+H AA+ G+     +LL+    A  N  DK
Sbjct: 54  ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK--HGADVNAQDK 111

Query: 55  DRKMTALHLAAGKGDARIVEAIISKN 80
             K TA  ++ G G+  + E +   N
Sbjct: 112 FGK-TAFDISIGNGNEDLAEILQKLN 136

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 16/126 (12%), Positives = 30/126 (23%), Gaps = 20/126 (15%)

Query: 22  GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK---MTALHLAAGKGDARIVEAIIS 78
            +  +  AA  G Y     L E  +   +     +       L     +   +I   +I+
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFE--KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 79  K--NPECYELVDNRGWNFLHYAV------VSFRVEKLTNLLENNPLARSLINEGDAKGNT 130
           K  + +        G              ++   E     LE    A   I         
Sbjct: 64  KGADIKS---RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG--AD--ITALYKPYKI 116

Query: 131 PLHVLA 136
            +    
Sbjct: 117 VVFKNI 122

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.5 bits (155), Expect = 4e-12
 Identities = 17/178 (9%), Positives = 45/178 (25%), Gaps = 24/178 (13%)

Query: 2   AALSKLLEIKKNLIKETDQY---------GWTPIHYAAYYGNYGTVNLLLETDQSAS-NI 51
           AA+    E    L ++  +           +  +        Y     L+  ++ A    
Sbjct: 13  AAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI--NKGADIKS 70

Query: 52  ADKDRKMTALHLAAGKG------DARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVE 105
             K+   T        G         + +  + K  +    +       +   + ++ V+
Sbjct: 71  RTKE-GTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVD 128

Query: 106 KLTNLLENNPLARSL---INEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNK 160
           +   +     +       +   D  G T L            + ++      Y+    
Sbjct: 129 ENEMIPLYKLIFSQSGLQLLIKDKWGLTALE-FVKRCQKPIALKMMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 10/90 (11%)

Query: 52  ADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAV----VSFRVEKL 107
           ++   +   +  AA  G       +  K  E  +       N L+  +       R +  
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKIS 58

Query: 108 TNLLENNPLARSLINEGDAKGNTPLHVLAA 137
             L+     A   I     +G T    L  
Sbjct: 59  MFLINKG--AD--IKSRTKEGTTLFFPLFQ 84

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 64.7 bits (159), Expect = 2e-13
 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 22 GWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEAIISK- 79
          G TP+H AA  G+   V LLLE    A  N  DK+ + T LHLAA  G   +V+ ++   
Sbjct: 2  GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAG 58

Query: 80 -NPECYELVDNRGWNFLHYA 98
           +       D  G   LH A
Sbjct: 59 ADVNA---KDKNGRTPLHLA 75

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 60.4 bits (148), Expect = 4e-12
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 8  LEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTA 60
          LE+ K L++        D+ G TP+H AA  G+   V LLLE    A  N  DK+ + T 
Sbjct: 15 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGR-TP 71

Query: 61 LHLAAGKGDARIVEAIISK 79
          LHLAA  G   +V+ ++  
Sbjct: 72 LHLAARNGHLEVVKLLLEA 90

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 60.7 bits (148), Expect = 6e-12
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 8/96 (8%)

Query: 8  LEIKKNLIK---ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHL 63
                L+             +  AA  G    V +L+     A     DK+   T LHL
Sbjct: 7  HHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMA--NGADVAAKDKNGS-TPLHL 63

Query: 64 AAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAV 99
          AA  G   +V+ ++    +     D  G      ++
Sbjct: 64 AARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISI 98

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 10/76 (13%)

Query: 8   LEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTA 60
            +  + L+         D+ G TP+H AA  G+   V LLLE    A ++  +D+   TA
Sbjct: 37  DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE--AGA-DVXAQDKFGKTA 93

Query: 61  LHLAAGKGDARIVEAI 76
             ++   G+  + E +
Sbjct: 94  FDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 24/115 (20%)

Query: 29  AAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVEAIISK--NPECYE 85
            + + ++   + L+         +         L  AA  G    V  +++   +     
Sbjct: 1   GSSHHHHHHSSGLV------PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAA-- 52

Query: 86  LVDNRGWNFLHYAVVSFRVE--KLTNLLEN--NPLARSLINEGDAKGNTPLHVLA 136
             D  G   LH A  +  +E  KL  LLE   +      +   D  G T   +  
Sbjct: 53  -KDKNGSTPLHLAARNGHLEVVKL--LLEAGAD------VXAQDKFGKTAFDISI 98

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHL 63
            LL     ++K      +     AA  G+   +N L E    +  + I  ++    A  L
Sbjct: 112 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY--HAFRL 169

Query: 64  AAGKGDARIVEAIISKNPE-CYELVDNRGWNFLHYA 98
           AA  G   ++  +    P     ++    +    +A
Sbjct: 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 58.8 bits (142), Expect = 8e-10
 Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 13/154 (8%)

Query: 7   LLEIKKNL-IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 65
           L E+     +       +     AA  G+   +N L E   + +    +     A   AA
Sbjct: 147 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 206

Query: 66  -GKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEG 124
            G+G   ++  ++          +   + +    V  F    +  L E +   +    +G
Sbjct: 207 VGRGHHNVINFLLDCPV-MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDG 265

Query: 125 ---------DAKGNTPLHVLAAIRPNEFDVDLVR 149
                      +G   L      R +E  +D +R
Sbjct: 266 VFDLVTKSECLQGFYMLR-NLIRRNDEVLLDDIR 298

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 19/154 (12%), Positives = 37/154 (24%), Gaps = 36/154 (23%)

Query: 7   LLEIKKNL-IKETDQYGWTPIHYAAY-YGNYGTVNLLLETDQS----------------- 47
           L E+             +    +AA   G++  +N LL+                     
Sbjct: 182 LCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVN 241

Query: 48  ---ASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAV---VS 101
              A ++        A  L+   G   +V                 G+  L   +     
Sbjct: 242 PFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ----------GFYMLRNLIRRNDE 291

Query: 102 FRVEKLTNLLENNPLARSL-INEGDAKGNTPLHV 134
             ++ +  LL    +             N  L +
Sbjct: 292 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 325

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 9/66 (13%), Positives = 16/66 (24%), Gaps = 5/66 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
                      +  A   GN G   LLL     +     K       ++    G   +  
Sbjct: 312 TATIPGDANELLRLALRLGNQGACALLLS--IPSVLALTKA---NNYYINETGGRLDLRA 366

Query: 75  AIISKN 80
             +  +
Sbjct: 367 VALEHH 372

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
           +      G T +HYAA Y     + LLL   ++     ++  + TAL +A  K      E
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGE-TALDIARKKHHKECEE 276

Query: 75  AIISKNPECYELVDN--RGWNFLH 96
            +       +    +    W    
Sbjct: 277 LLEQAQAGTFAFPLHVDYSWVIST 300

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 59  TALHLAAGKGDAR---IVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNP 115
             LHLA    +     +V+ II  N    +     G   LHYA +  + + L  LL+   
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-- 248

Query: 116 LARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQAN 154
             R+L+   +  G T L  +A  + ++   +L+ + QA 
Sbjct: 249 --RALVGTVNEAGETALD-IARKKHHKECEELLEQAQAG 284

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 59  TALHLAAGKGDARIVEAI--ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPL 116
           TALHLA    D   +  +  + +N    +    +G   LHY  ++   E L  LL     
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG--- 227

Query: 117 ARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQAN 154
            ++ I   +  G TPL  +A    +E   +L+ +  + 
Sbjct: 228 -KASIEIANESGETPLD-IAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDR-KMTALHLAAGKGDARIV 73
           + +    G T +HY     N   + LLL   +  ++I   +    T L +A         
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLL---RGKASIEIANESGETPLDIAKRLKHEHCE 254

Query: 74  E 74
           E
Sbjct: 255 E 255

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
           + + D  G  P+H+A   G+ G   L L+         D + +   L +A    +A IV 
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADL-GARDSEGR-DPLTIAMETANADIVT 318

Query: 75  AIISKNPECYELVDN 89
            +        E    
Sbjct: 319 LLRLAKMREAEAAQG 333

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 53/331 (16%), Positives = 99/331 (29%), Gaps = 78/331 (23%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYG---TVNLLLETDQSASNIADKDRKMTALH 62
             L++++ L++        P       G  G   T  + L+   S       D K+  L+
Sbjct: 136 PYLKLRQALLELR------PAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLN 188

Query: 63  LAAGKGDARIVEAIISK-NPECYELVDNRGWNFLHYAVVSFRVE----KLTNLLENNPLA 117
           L     +    E ++       Y++  N      H + +  R+     +L  LL++ P  
Sbjct: 189 L----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 118 RSLI---NEGDAKGNTPLHVLAAIRPNEFDVD---LVRKTQANYDAVNKQIVSVRHIFNY 171
             L+   N  +AK         A     F++    L+  T+       KQ+         
Sbjct: 245 NCLLVLLNVQNAK------AWNA-----FNLSCKILL-TTR------FKQVTDFLSAATT 286

Query: 172 GYPELKEEIQKLSKDVGRGQYSDGVICIRESEDRAVQKYVTEENYKDTRASHLVVAALIA 231
            +  L      L+ D  +      + C  +   R V              ++    ++I 
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT------------TNPRRLSII- 333

Query: 232 TVAFAAAFTIPGGYRSENGTAILRRNTAFQAFIVADSIAMVFSLS-AVFTHFLMSFIIEE 290
                A     G    +N       N      I+  S+     L  A +        +  
Sbjct: 334 -----AESIRDGLATWDN---WKHVNCDKLTTIIESSLN---VLEPAEYRKMFDRLSV-- 380

Query: 291 TKDFNEDL-----LLASVWFTIFSMGAMVIA 316
              F         LL+ +WF +     MV+ 
Sbjct: 381 ---FPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.98
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.95
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
4ev6_A	339	Magnesium transport protein CORA; membrane protein	83.64
2iub_A	363	CORA, divalent cation transport-related protein; m	82.06

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.7e-32  Score=226.97  Aligned_cols=157  Identities=27%  Similarity=0.260  Sum_probs=144.8

Q ss_pred             hHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCC
Q 042924           24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFR  103 (355)
Q Consensus        24 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  103 (355)
                      ++|+.||+.|+.++|+.|+++|+++ +.++. .|+||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+++|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~-~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDS-DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence            4799999999999999999999998 88887 9999999999999999999999999998 8899999999999999999


Q ss_pred             hhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHH
Q 042924          104 VEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKL  183 (355)
Q Consensus       104 ~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~  183 (355)
                      .++++.|++    .|+++|.+|.+|+||||+|+..|+ .+++++|+++|++++.+|.+|+|||++|....   ..+++++
T Consensus        83 ~~~v~~Ll~----~gadvn~~d~~G~TpLh~A~~~g~-~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g---~~~iv~~  154 (169)
T 4gpm_A           83 KEVVKLLIS----KGADVNAKDSDGRTPLHHAAENGH-KEVVKLLISKGADVNTSDSDGRTPLDLAREHG---NEEVVKL  154 (169)
T ss_dssp             HHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHHH----CcCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCccccCCCCCCHHHHHHHcC---CHHHHHH
Confidence            999999999    789999999999999999999996 89999999999999999999999999999765   5688999


Q ss_pred             HHHcCCCC
Q 042924          184 SKDVGRGQ  191 (355)
Q Consensus       184 l~~~~~~~  191 (355)
                      |.+.|+.-
T Consensus       155 Ll~~GA~i  162 (169)
T 4gpm_A          155 LEKQGGWL  162 (169)
T ss_dssp             HHTC----
T ss_pred             HHHCCCCc
Confidence            99988754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=6e-33  Score=247.27  Aligned_cols=161  Identities=25%  Similarity=0.278  Sum_probs=147.7

Q ss_pred             HHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccc
Q 042924            5 SKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECY   84 (355)
Q Consensus         5 ~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   84 (355)
                      .++|...+.++|.+|.+|+||||+||..|+.+++++|++.++++ +.++. .|.||+|.|+..++.++++.|++.++++ 
T Consensus        69 v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-  145 (269)
T 4b93_B           69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNA-DQAVPLHLACQQGHFQVVKCLLDSNAKP-  145 (269)
T ss_dssp             ------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCS-
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCC-CCCCccccccccChHHHHHHHHHCCCCC-
Confidence            34556677889999999999999999999999999999999987 77777 9999999999999999999999999998 


Q ss_pred             cccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCc
Q 042924           85 ELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVS  164 (355)
Q Consensus        85 ~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~T  164 (355)
                      +.+|..|+||||+|+.+|+.+++++|++    .|+++|.+|.+|+||||+|+..|+ .+++++|+++|+|++.+|.+|+|
T Consensus       146 n~~d~~g~TpL~~A~~~g~~~~v~~Ll~----~gadvn~~~~~g~t~Lh~A~~~g~-~~~v~~Ll~~Gad~~~~d~~G~T  220 (269)
T 4b93_B          146 NKKDLSGNTPLIYACSGGHHELVALLLQ----HGASINASNNKGNTALHEAVIEKH-VFVVELLLLHGASVQVLNKRQRT  220 (269)
T ss_dssp             CCCCTTCCCHHHHHHHTTCGGGHHHHHH----TTCCTTCBCTTSCBHHHHHHHTTC-HHHHHHHHHTTCCSCCCCTTSCC
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHH----CCCCCCccccCCCcHHHHHHHcCC-HHHHHHHHHCCCCCCCcCCCCCC
Confidence            8899999999999999999999999999    789999999999999999999996 99999999999999999999999


Q ss_pred             HHHHHhhCC
Q 042924          165 VRHIFNYGY  173 (355)
Q Consensus       165 pl~~a~~~~  173 (355)
                      |||+|.++.
T Consensus       221 pL~~A~~~~  229 (269)
T 4b93_B          221 AVDCAEQNS  229 (269)
T ss_dssp             SGGGSCTTC
T ss_pred             HHHHHHhCC
Confidence            999998643

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=6.9e-32  Score=229.24  Aligned_cols=178  Identities=17%  Similarity=0.162  Sum_probs=160.8

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++++|...+.+++.+|.+|+||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|++.++
T Consensus        19 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~   96 (201)
T 3hra_A           19 KKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNS-ISDSPYLYAGAQGRTEILAYMLKHAT   96 (201)
T ss_dssp             HHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            56888999888789999999999999999999999999999999988 77887 89999999999999999999996666


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhh-hhhccCCCCCCcHHHHHHhcCCc----hHHHHHHhccCcccc
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLAR-SLINEGDAKGNTPLHVLAAIRPN----EFDVDLVRKTQANYD  156 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~-~~~n~~d~~G~T~Lh~A~~~~~~----~~~~~lL~~~ga~~~  156 (355)
                      ...+..|..|+||||+|+.+++.++++.|++    .+ .+++.+|.+|+||||+|+..++.    .+++++|+++|++++
T Consensus        97 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~  172 (201)
T 3hra_A           97 PDLNKHNRYGGNALIPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS  172 (201)
T ss_dssp             CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred             cccccccCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence            4458899999999999999999999999999    56 78999999999999999998842    788999999999999


Q ss_pred             cccCCCCcHHHHHhhCCCchHHHHHHHHHHcC
Q 042924          157 AVNKQIVSVRHIFNYGYPELKEEIQKLSKDVG  188 (355)
Q Consensus       157 ~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~  188 (355)
                      .+|.+|+||+|+|....   ..+++++|.+.|
T Consensus       173 ~~~~~g~t~l~~A~~~~---~~~~~~~Ll~~G  201 (201)
T 3hra_A          173 IKDNSGRTAMDYANQKG---YTEISKILAQYN  201 (201)
T ss_dssp             CCCTTSCCHHHHHHHHT---CHHHHHHHHTCC
T ss_pred             ccCCCCCCHHHHHHHcC---CHhHHHHHHhcC
Confidence            99999999999999665   457777777643

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.98  E-value=4.1e-31  Score=229.39  Aligned_cols=181  Identities=26%  Similarity=0.262  Sum_probs=168.6

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.+++++...+...+.+|.+|.||||+|+..|+.+++++|++.+.++ +.++. .|.||||+|+..|+.+++++|++.++
T Consensus        20 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~   97 (231)
T 3aji_A           20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDD-AGWSPLHIAASAGXDEIVKALLVKGA   97 (231)
T ss_dssp             HHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCC-CCCCHHHHHHHcCHHHHHHHHHHcCC
Confidence            57889999999999999999999999999999999999999999887 77787 99999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCC
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ  161 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~  161 (355)
                      ++ +.+|..|+||||+|+..++.++++.|++    .|.+++.+|..|+||||+|+..|+ .+++++|++.|++++.+|.+
T Consensus        98 ~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~  171 (231)
T 3aji_A           98 HV-NAVNQNGCTPLHYAASKNRHEIAVMLLE----GGANPDAKDHYDATAMHRAAAKGN-LKMVHILLFYKASTNIQDTE  171 (231)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHHTTCCSCCCCTT
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHcCC-HHHHHHHHhcCCCccccCCC
Confidence            98 8889999999999999999999999999    778999999999999999999995 89999999999999999999


Q ss_pred             CCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          162 IVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      |.||+|+|....   ..+++++|.+.|.++..
T Consensus       172 g~t~L~~A~~~~---~~~~v~~Ll~~ga~~~~  200 (231)
T 3aji_A          172 GNTPLHLACDEE---RVEEAKFLVTQGASIYI  200 (231)
T ss_dssp             SCCHHHHHHHTT---CHHHHHHHHHTTCCSCC
T ss_pred             CCCHHHHHHHCC---CHHHHHHHHHCCCCCCC
Confidence            999999999765   46788999998877653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=2.9e-31  Score=236.96  Aligned_cols=183  Identities=23%  Similarity=0.235  Sum_probs=162.6

Q ss_pred             hHHHHHHHhccc--cccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhh
Q 042924            2 AALSKLLEIKKN--LIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK   79 (355)
Q Consensus         2 ~~v~~lL~~~~~--~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~   79 (355)
                      +.++.|+..+..  .++.+|..|+||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|++.
T Consensus        23 ~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~  100 (282)
T 1oy3_D           23 PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAER-GGHTALHLACRVRAHTCACVLLQP  100 (282)
T ss_dssp             HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCT-TSCCHHHHHTTTTCHHHHHHHSSS
T ss_pred             HHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCcchhHhhhcc
Confidence            456667765443  38999999999999999999999999999999988 78887 999999999999999999999998


Q ss_pred             CCcc----------------------------------------------ccccccCCchHHHHHHhcCChhHHHHHHhc
Q 042924           80 NPEC----------------------------------------------YELVDNRGWNFLHYAVVSFRVEKLTNLLEN  113 (355)
Q Consensus        80 ~~~~----------------------------------------------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~  113 (355)
                      +++.                                              .+.+|..|+||||+|+.+|+.++++.|++ 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-  179 (282)
T 1oy3_D          101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-  179 (282)
T ss_dssp             CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHH-
Confidence            7651                                              35678899999999999999999999999 


Q ss_pred             ChhhhhhhccCCCC-CCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          114 NPLARSLINEGDAK-GNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       114 ~~~~~~~~n~~d~~-G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                         .|.+++.+|.. |+||||+|+..|+ .+++++|+++|++++.+|.+|+||||+|....   ..+++++|.+.|.++.
T Consensus       180 ---~g~~~~~~~~~~g~tpL~~A~~~~~-~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~---~~~~v~~Ll~~ga~~~  252 (282)
T 1oy3_D          180 ---AGADLNKPEPTCGRTPLHLAVEAQA-ASVLELLLKAGADPTARMYGGRTPLGSALLRP---NPILARLLRAHGAPEP  252 (282)
T ss_dssp             ---HTCCTTCCCTTTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS---CHHHHHHHHHTTCCCC
T ss_pred             ---cCCCCCCCCCCCCcCHHHHHHHcCC-HHHHHHHHHcCCCCcccccCCCCHHHHHHHcC---CcHHHHHHHHcCCCcC
Confidence               78899999865 9999999999996 99999999999999999999999999999765   5689999999888775


Q ss_pred             CC
Q 042924          193 SD  194 (355)
Q Consensus       193 ~~  194 (355)
                      ..
T Consensus       253 ~~  254 (282)
T 1oy3_D          253 ED  254 (282)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=1.5e-31  Score=232.45  Aligned_cols=180  Identities=22%  Similarity=0.187  Sum_probs=157.2

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcc----cccccCCCchHHHHHHhcCCHHHHHHHh
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS----NIADKDRKMTALHLAAGKGDARIVEAII   77 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~----~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll   77 (355)
                      +.++.|++..+.+++.+|.+|+||||+|+..|+.++++.|++.+++..    +.++. .|.||||+|+..|+.+++++|+
T Consensus        17 ~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll   95 (232)
T 2rfa_A           17 QALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY-EGQTALHIAVINQNVNLVRALL   95 (232)
T ss_dssp             HHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTT-TTCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCC-CCcCHHHHHHHcCCHHHHHHHH
Confidence            467788887788899999999999999999999999999999987753    33444 8999999999999999999999


Q ss_pred             hhCCcccccccc-------------CCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHH
Q 042924           78 SKNPECYELVDN-------------RGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFD  144 (355)
Q Consensus        78 ~~~~~~~~~~d~-------------~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~  144 (355)
                      +.++++ +.++.             +|+||||+|+..|+.++++.|++    .|+++|.+|.+|+||||+|+..++ .++
T Consensus        96 ~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~t~L~~A~~~~~-~~~  169 (232)
T 2rfa_A           96 ARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE----HGADIRAQDSLGNTVLHILILQPN-KTF  169 (232)
T ss_dssp             HTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHTCSC-HHH
T ss_pred             hCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCC-hHH
Confidence            999887 55544             79999999999999999999999    788999999999999999999996 666


Q ss_pred             H----HHHhccCccc------ccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCC
Q 042924          145 V----DLVRKTQANY------DAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       145 ~----~lL~~~ga~~------~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~  191 (355)
                      +    ++|++.|++.      +.+|.+|+||+|+|....   ..+++++|.+.|..+
T Consensus       170 ~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g---~~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          170 ACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG---NIVMFQHLMQKRKHI  223 (232)
T ss_dssp             HHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHT---CHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcC---CHHHHHHHHhcCccc
Confidence            6    9999999988      689999999999999665   457788877755433

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=1.9e-31  Score=235.33  Aligned_cols=182  Identities=24%  Similarity=0.196  Sum_probs=154.6

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|+..+++..+..|.+|+||||+|+..|+.++++.|+++|+++ +.++. .|.||||+|+..|+.+++++|++.++
T Consensus        37 ~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~  114 (253)
T 1yyh_A           37 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDN-MGRTPLHAAVSADAQGVFQILIRNRA  114 (253)
T ss_dssp             ---------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             HHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            45677777777766777999999999999999999999999999987 77887 99999999999999999999999998


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCC
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ  161 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~  161 (355)
                      ...+.+|..|+||||+|+..++.++++.|++    .|.+++.+|.+|+||||+|+..|+ .+++++|+++|++++.+|.+
T Consensus       115 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~  189 (253)
T 1yyh_A          115 TDLDARMHDGTTPLILAARLAVEGMLEDLIN----SHADVNAVDDLGKSALHWAAAVNN-VDAAVVLLKNGANKDMQNNR  189 (253)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH----TTCCTTCBCTTSCBHHHHHHHHTC-HHHHHHHHHTTCCTTCCCTT
T ss_pred             CCccccCCCCCcHHHHHHHcChHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCCcCCC
Confidence            5558899999999999999999999999999    788999999999999999999996 89999999999999999999


Q ss_pred             CCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          162 IVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      |.||+|+|+...   ..+++++|.+.|.++..
T Consensus       190 g~tpL~~A~~~~---~~~~v~~Ll~~ga~~~~  218 (253)
T 1yyh_A          190 EETPLFLAAREG---SYETAKVLLDHFANRDI  218 (253)
T ss_dssp             SCCHHHHHHHHT---CHHHHHHHHHTTCCTTC
T ss_pred             CCCHHHHHHHCC---CHHHHHHHHHcCCCccc
Confidence            999999999665   56789999998877653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.7e-31  Score=225.57  Aligned_cols=166  Identities=22%  Similarity=0.184  Sum_probs=152.9

Q ss_pred             ccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccC
Q 042924           11 KKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNR   90 (355)
Q Consensus        11 ~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   90 (355)
                      .+.++|.+|.+|+||||+|+..|+.++++.|++.+.++ +.++. .|.||||+|+..|+.+++++|++.++++ +.+|..
T Consensus        24 ~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~  100 (192)
T 2rfm_A           24 LDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDI-EGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFS  100 (192)
T ss_dssp             HHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTT
T ss_pred             hHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccc-cCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCC
Confidence            34567889999999999999999999999999999887 77777 8999999999999999999999999988 888999


Q ss_pred             CchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHh
Q 042924           91 GWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFN  170 (355)
Q Consensus        91 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~  170 (355)
                      |+||||+|+..++.+++++|++    .|.+++.+|.+|+||||+|+..++ .+++++|+++|++++.+|.+|.||+++|.
T Consensus       101 g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  175 (192)
T 2rfm_A          101 GKTPLMWSIIFGYSEMSYFLLE----HGANVNDRNLEGETPLIVASKYGR-SEIVKKLLELGADISARDLTGLTAEASAR  175 (192)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHH----TTCCSSCCCTTCCCHHHHHHHHTC-HHHHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            9999999999999999999999    788999999999999999999996 89999999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHc
Q 042924          171 YGYPELKEEIQKLSKDV  187 (355)
Q Consensus       171 ~~~~~~~~~i~~~l~~~  187 (355)
                      ...   ..+++++|.+.
T Consensus       176 ~~~---~~~~v~~Ll~~  189 (192)
T 2rfm_A          176 IFG---RQEVIKIFTEV  189 (192)
T ss_dssp             HTT---CHHHHHHHHHH
T ss_pred             HhC---cHHHHHHHHhc
Confidence            765   45677777664

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=3.6e-31  Score=219.03  Aligned_cols=148  Identities=28%  Similarity=0.351  Sum_probs=132.3

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.|+.||+ .+.++|.+|.+|+||||+|+..|+.++++.|++.|+++ +.++. .|+||||+|+..|+.+++++|++.++
T Consensus        18 ~~v~~Ll~-~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~ga   94 (169)
T 4gpm_A           18 DRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDS-DGRTPLHHAAENGHKEVVKLLISKGA   94 (169)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhcc-CCCCHHHHHHHcCCHHHHHHHHHCcC
Confidence            45566555 56779999999999999999999999999999999998 88887 99999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccc
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAV  158 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~  158 (355)
                      ++ +.+|.+|+||||+|+++|+.++++.|++    .|++++.+|.+|+||||+|++.|+ .+++++|+++|++++..
T Consensus        95 dv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~----~gad~~~~d~~G~TpL~~A~~~g~-~~iv~~Ll~~GA~ie~~  165 (169)
T 4gpm_A           95 DV-NAKDSDGRTPLHHAAENGHKEVVKLLIS----KGADVNTSDSDGRTPLDLAREHGN-EEVVKLLEKQGGWLEHH  165 (169)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHTC-------
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCcCCC
Confidence            98 8899999999999999999999999999    789999999999999999999996 99999999999998643

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=1.4e-30  Score=224.84  Aligned_cols=178  Identities=24%  Similarity=0.194  Sum_probs=122.6

Q ss_pred             HHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccc
Q 042924            5 SKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECY   84 (355)
Q Consensus         5 ~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   84 (355)
                      +.|++.+.+..+..|.+|+||||+|+..|+.+++++|++++.++ +..+. .|.||||+|+..|+.+++++|++.++...
T Consensus         8 ~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~   85 (223)
T 2f8y_A            8 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDL   85 (223)
T ss_dssp             ETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHBTTSCT
T ss_pred             HHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            33444444433444677777777777777777777777777665 55665 67777777777777777777777766444


Q ss_pred             cccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCc
Q 042924           85 ELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVS  164 (355)
Q Consensus        85 ~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~T  164 (355)
                      +..|..|+||||+|+..++.++++.|++    .+.+++.+|.+|+||||+|+..++ .+++++|+++|++++.+|.+|.|
T Consensus        86 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t  160 (223)
T 2f8y_A           86 DARMHDGTTPLILAARLAVEGMLEDLIN----SHADVNAVDDLGKSALHWAAAVNN-VDAAVVLLKNGANKDMQNNREET  160 (223)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             ccCCCCCCcHHHHHHHhCcHHHHHHHHH----cCCCCcCcCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCCcCCCCcC
Confidence            6667777777777777777777777777    566677777777777777777774 66777777777777777777777


Q ss_pred             HHHHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          165 VRHIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       165 pl~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                      |+|+|+...   ..+++++|.+.|.++.
T Consensus       161 ~L~~A~~~~---~~~~v~~Ll~~ga~~~  185 (223)
T 2f8y_A          161 PLFLAAREG---SYETAKVLLDHFANRD  185 (223)
T ss_dssp             HHHHHHHHT---CHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHcC---CHHHHHHHHHcCCCCc
Confidence            777777544   3466666666665554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=1.5e-30  Score=225.21  Aligned_cols=182  Identities=20%  Similarity=0.226  Sum_probs=163.2

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccC--CCcccccccCCCchHHHHHHhcCCHHHHHHHhhh
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETD--QSASNIADKDRKMTALHLAAGKGDARIVEAIISK   79 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~--~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~   79 (355)
                      +.++.|++.++...+.+|.+|+||||+|+..|+.++++.|++.+  .+.....+. .|.||||+|+..|+.+++++|++.
T Consensus        16 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~   94 (228)
T 2dzn_A           16 FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD-SGWTPFHIACSVGNLEVVKSLYDR   94 (228)
T ss_dssp             HHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT-TSCCHHHHHHHHCCHHHHHHHHSS
T ss_pred             HHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC-CCCCHHHHHHHcCCHHHHHHHHhC
Confidence            57888999998888889999999999999999999999999998  444222555 899999999999999999999999


Q ss_pred             C--CccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccC-cccc
Q 042924           80 N--PECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQ-ANYD  156 (355)
Q Consensus        80 ~--~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g-a~~~  156 (355)
                      +  ++. +..|..|+||||+|+..++.++++.|++    .|.+++.+|.+|+||||+|+..|+ .+++++|++.| ++++
T Consensus        95 g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~  168 (228)
T 2dzn_A           95 PLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIE----NGASVRIKDKFNQIPLHRAASVGS-LKLIELLCGLGKSAVN  168 (228)
T ss_dssp             SSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTC-HHHHHHHHTTTCCCSC
T ss_pred             CCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHH----cCCCccccCCCCCCHHHHHHHcCC-HHHHHHHHhcCccccc
Confidence            8  666 7889999999999999999999999999    788999999999999999999996 89999999999 9999


Q ss_pred             cccCCCCcHHHHHhhCCCchHHHHHHHHH-HcCCCCCC
Q 042924          157 AVNKQIVSVRHIFNYGYPELKEEIQKLSK-DVGRGQYS  193 (355)
Q Consensus       157 ~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~-~~~~~~~~  193 (355)
                      .+|.+|+||+|+|....   ..+++++|. +.|.++..
T Consensus       169 ~~d~~g~t~L~~A~~~~---~~~~v~~Ll~~~ga~~~~  203 (228)
T 2dzn_A          169 WQDKQGWTPLFHALAEG---HGDAAVLLVEKYGAEYDL  203 (228)
T ss_dssp             CCCTTSCCHHHHHHHTT---CHHHHHHHHHHHCCCSCC
T ss_pred             CcCCCCCCHHHHHHHcC---CHHHHHHHHHhcCCCCCc
Confidence            99999999999999765   457777777 77777654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=6.6e-31  Score=228.11  Aligned_cols=174  Identities=22%  Similarity=0.260  Sum_probs=158.8

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE   82 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   82 (355)
                      .++.|+ +.+.+++.+|..|+||||+|+..|+.+++++|++++.++ +.++. .|.||||+|+..|+.+++++|++.+.+
T Consensus        55 ~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~  131 (231)
T 3aji_A           55 IVEFLL-QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGAN  131 (231)
T ss_dssp             HHHHHH-HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHH-HhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            455555 456778999999999999999999999999999999987 77777 899999999999999999999999998


Q ss_pred             cccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCC
Q 042924           83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQI  162 (355)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g  162 (355)
                      + +.+|..|+||||+|+..|+.++++.|++    .|.+++.+|.+|+||||+|+..++ .+++++|+++|++++.+|.+|
T Consensus       132 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g  205 (231)
T 3aji_A          132 P-DAKDHYDATAMHRAAAKGNLKMVHILLF----YKASTNIQDTEGNTPLHLACDEER-VEEAKFLVTQGASIYIENKEE  205 (231)
T ss_dssp             T-TCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTCCSCCCCTTS
T ss_pred             C-CCcCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCccccCCCCCCHHHHHHHCCC-HHHHHHHHHCCCCCCCCCCCC
Confidence            8 8889999999999999999999999999    788999999999999999999996 899999999999999999999


Q ss_pred             CcHHHHHhhCCCchHHHHHHHHHHcC
Q 042924          163 VSVRHIFNYGYPELKEEIQKLSKDVG  188 (355)
Q Consensus       163 ~Tpl~~a~~~~~~~~~~i~~~l~~~~  188 (355)
                      +||+++|...+   ..++.++|.+.+
T Consensus       206 ~t~l~~A~~~~---~~~i~~lL~~~~  228 (231)
T 3aji_A          206 KTPLQVAKGGL---GLILKRLAEGEE  228 (231)
T ss_dssp             CCHHHHSCHHH---HHHHHHHHHHHH
T ss_pred             CCHHHHHHhhH---HHHHHHHHcccc
Confidence            99999998654   677888887754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=6.6e-31  Score=231.81  Aligned_cols=176  Identities=21%  Similarity=0.201  Sum_probs=158.7

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE   82 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   82 (355)
                      .++.| .+.+.+++.+|.+|+||||+|+..|+.+++++|++.++...+.++. .|.||||+|+..|+.+++++|++.+++
T Consensus        72 ~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~  149 (253)
T 1yyh_A           72 AAKRL-LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHAD  149 (253)
T ss_dssp             HHHHH-HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT-TCCCHHHHHHHHTCSSHHHHHHHTTCC
T ss_pred             HHHHH-HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC-CCCcHHHHHHHcChHHHHHHHHHcCCC
Confidence            44444 4567778999999999999999999999999999998855588887 999999999999999999999999999


Q ss_pred             cccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCC
Q 042924           83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQI  162 (355)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g  162 (355)
                      + +.+|..|+||||+|+..|+.++++.|++    .|++++.+|.+|+||||+|+..|+ .+++++|+++|++++.+|..|
T Consensus       150 ~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~tpL~~A~~~~~-~~~v~~Ll~~ga~~~~~d~~g  223 (253)
T 1yyh_A          150 V-NAVDDLGKSALHWAAAVNNVDAAVVLLK----NGANKDMQNNREETPLFLAAREGS-YETAKVLLDHFANRDITDHMD  223 (253)
T ss_dssp             T-TCBCTTSCBHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHHTTCCTTCCCTTC
T ss_pred             C-CCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHCCC-HHHHHHHHHcCCCccccccCC
Confidence            8 8889999999999999999999999999    788999999999999999999996 899999999999999999999


Q ss_pred             CcHHHHHhhCCCchHHHHHHHHHHcCC
Q 042924          163 VSVRHIFNYGYPELKEEIQKLSKDVGR  189 (355)
Q Consensus       163 ~Tpl~~a~~~~~~~~~~i~~~l~~~~~  189 (355)
                      +||+++|....   ..+|.++|.....
T Consensus       224 ~tpl~~A~~~g---~~~i~~~l~~~~~  247 (253)
T 1yyh_A          224 RLPRDIAQERM---HHDIVRLLDLEHH  247 (253)
T ss_dssp             CCHHHHHHHTT---CHHHHHHHHC---
T ss_pred             CCHHHHHHHcC---CHHHHHHHHHHhh
Confidence            99999999776   5678888876443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=5e-31  Score=227.60  Aligned_cols=180  Identities=22%  Similarity=0.226  Sum_probs=163.7

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|++ .+.+++.+|.+|+||||+|+..|+.+++++|++.++...+..+. .|.||||+|+..|+.+++++|++.++
T Consensus        39 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~  116 (223)
T 2f8y_A           39 DAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHA  116 (223)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCCcHHHHHHHhCcHHHHHHHHHcCC
Confidence            34555554 56778999999999999999999999999999998855577787 99999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCC
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ  161 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~  161 (355)
                      ++ +.+|..|+||||+|+..++.++++.|++    .|.+++.+|.+|+||||+|+..++ .+++++|+++|++++.+|..
T Consensus       117 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~  190 (223)
T 2f8y_A          117 DV-NAVDDLGKSALHWAAAVNNVDAAVVLLK----NGANKDMQNNREETPLFLAAREGS-YETAKVLLDHFANRDITDHM  190 (223)
T ss_dssp             CT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHTC-HHHHHHHHHTTCCTTCCCTT
T ss_pred             CC-cCcCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCcCHHHHHHHcCC-HHHHHHHHHcCCCCcccccc
Confidence            98 8889999999999999999999999999    788999999999999999999996 89999999999999999999


Q ss_pred             CCcHHHHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          162 IVSVRHIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                      |.||+++|....   ..+++++|.+.|....
T Consensus       191 g~t~l~~A~~~~---~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          191 DRLPRDIAQERM---HHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             CCCHHHHHHHTT---CHHHHHHHHHTTCSSC
T ss_pred             CCCHHHHHHHhc---chHHHHHHHHcCCCcc
Confidence            999999999766   5689999999877654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=6.2e-30  Score=223.17  Aligned_cols=181  Identities=22%  Similarity=0.167  Sum_probs=163.4

Q ss_pred             hHHHHHHH---hccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhh
Q 042924            2 AALSKLLE---IKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS   78 (355)
Q Consensus         2 ~~v~~lL~---~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~   78 (355)
                      +.++.|++   ..+..++.+|.+|.||||+|+..|+.+++++|++.|.++ +..+. .|.||||+|+..|+.+++++|++
T Consensus        23 ~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~  100 (241)
T 1k1a_A           23 PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDR-HGQTAAHLACEHRSPTCLRALLD  100 (241)
T ss_dssp             HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCC-CCCCHHHHHHHcCCHHHHHHHHH
Confidence            45666666   477889999999999999999999999999999999887 77777 99999999999999999999999


Q ss_pred             hCC----ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCC-CCCCcHHHHHHhcCCchHHHHHHhccCc
Q 042924           79 KNP----ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGD-AKGNTPLHVLAAIRPNEFDVDLVRKTQA  153 (355)
Q Consensus        79 ~~~----~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~ga  153 (355)
                      .++    +. +..|..|+||||+|+..++.++++.|++    .|.+++.+| ..|+||||+|+..++ .+++++|+++|+
T Consensus       101 ~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~  174 (241)
T 1k1a_A          101 SAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLE----RGADIDAVDIKSGRSPLIHAVENNS-LSMVQLLLQHGA  174 (241)
T ss_dssp             HSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTC-HHHHHHHHHTTC
T ss_pred             cCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHH----cCCCcccccccCCCcHHHHHHHcCC-HHHHHHHHHcCC
Confidence            987    44 7789999999999999999999999999    778899998 889999999999995 899999999999


Q ss_pred             ccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          154 NYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       154 ~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      +++.+|.+|.||+|+|....   ..+++++|.+.|.++..
T Consensus       175 ~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~ga~~~~  211 (241)
T 1k1a_A          175 NVNAQMYSGSSALHSASGRG---LLPLVRTLVRSGADSSL  211 (241)
T ss_dssp             CTTCBCTTSCBHHHHHHHHT---CHHHHHHHHHTTCCTTC
T ss_pred             CCCCcCCCCCCHHHHHHHcC---CHHHHHHHHhcCCCCCC
Confidence            99999999999999999665   46788888888877643

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.3e-30  Score=227.31  Aligned_cols=170  Identities=20%  Similarity=0.183  Sum_probs=157.0

Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc-----ccccc
Q 042924           13 NLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE-----CYELV   87 (355)
Q Consensus        13 ~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~-----~~~~~   87 (355)
                      .+++.+|..|+||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|++.+++     ..+..
T Consensus        36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  113 (236)
T 1ikn_D           36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDF-RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT  113 (236)
T ss_dssp             CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCT-TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCC
T ss_pred             HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhcc
Confidence            368999999999999999999999999999999987 78887 999999999999999999999999864     24778


Q ss_pred             ccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCC-CCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHH
Q 042924           88 DNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDA-KGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVR  166 (355)
Q Consensus        88 d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl  166 (355)
                      |..|+||||+|+.+|+.+++++|++    .|.+++.+|. +|+||||+|+..|+ .+++++|+++|++++.+|..|+||+
T Consensus       114 ~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~tpL~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g~tpl  188 (236)
T 1ikn_D          114 NYNGHTCLHLASIHGYLGIVELLVS----LGADVNAQEPCNGRTALHLAVDLQN-PDLVSLLLKCGADVNRVTYQGYSPY  188 (236)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTC-HHHHHHHHTTTCCSCCCCTTCCCGG
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCcccCCCCCHH
Confidence            8899999999999999999999999    7899999998 99999999999996 9999999999999999999999999


Q ss_pred             HHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          167 HIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       167 ~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                      ++|....   ..+++++|.+.|..+.
T Consensus       189 ~~A~~~~---~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          189 QLTWGRP---STRIQQQLGQLTLENL  211 (236)
T ss_dssp             GGCTTSS---CHHHHHHHHTTSCGGG
T ss_pred             HHHHccC---chHHHHHHHHcchhhh
Confidence            9999765   5689999999888665

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=1.4e-29  Score=220.59  Aligned_cols=180  Identities=23%  Similarity=0.167  Sum_probs=161.9

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE   82 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   82 (355)
                      .++.|+ +.+..++..|.+|.||||+|+..|+.+++++|+++|.++ +.++. .|.||||+|+..|+.+++++|++.++.
T Consensus        26 ~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~  102 (237)
T 3b7b_A           26 ICHMLV-QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQM  102 (237)
T ss_dssp             HHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCT-TSCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             HHHHHH-HcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCC
Confidence            455555 456778999999999999999999999999999999887 77776 899999999999999999999999965


Q ss_pred             cccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCC
Q 042924           83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQI  162 (355)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g  162 (355)
                      ..+..|..|+||||+|+..++.++++.|++    .|.+++.+|.+|+||||+|+..|+ .+++++|++.|++++.+|..|
T Consensus       103 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~g~~~~~~~~~g  177 (237)
T 3b7b_A          103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLS----KGSDINIRDNEENICLHWAAFSGC-VDIAEILLAAKCDLHAVNIHG  177 (237)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHCC-HHHHHHHHTTTCCTTCCCTTC
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHCCC-HHHHHHHHHcCCCCCCcCCCC
Confidence            558889999999999999999999999999    778999999999999999999995 899999999999999999999


Q ss_pred             CcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          163 VSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       163 ~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      .||+|+|....   ..+++++|.+.|.++..
T Consensus       178 ~t~L~~A~~~~---~~~~v~~Ll~~gad~~~  205 (237)
T 3b7b_A          178 DSPLHIAAREN---RYDCVVLFLSRDSDVTL  205 (237)
T ss_dssp             CCHHHHHHHTT---CHHHHHHHHTTTCCTTC
T ss_pred             CCHHHHHHHhC---CHhHHHHHHHcCCCCCc
Confidence            99999999765   56788889888877643

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=5.2e-30  Score=235.71  Aligned_cols=185  Identities=24%  Similarity=0.221  Sum_probs=154.0

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++++|...+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|++.++
T Consensus        38 ~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~g~  115 (351)
T 3utm_A           38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDK-GGLVPLHNACSYGHYEVTELLLKHGA  115 (351)
T ss_dssp             HHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCC-CCCcHHHHHHHCCCHHHHHHHHHCCC
Confidence            45777888778888888888999999999999999999999888877 77776 88899999999999999999998888


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChh---------------------------------------------
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPL---------------------------------------------  116 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~---------------------------------------------  116 (355)
                      ++ +..|..|+||||+|+.+|+.++++.|++....                                             
T Consensus       116 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (351)
T 3utm_A          116 CV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKV  194 (351)
T ss_dssp             CT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHH
Confidence            87 77788888899988888888888888764210                                             


Q ss_pred             -----------------------------------------hhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCccc
Q 042924          117 -----------------------------------------ARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANY  155 (355)
Q Consensus       117 -----------------------------------------~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~  155 (355)
                                                               .|.++|.+|.+|+||||+|+..|+ .+++++|+++|+++
T Consensus       195 ~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~ga~~  273 (351)
T 3utm_A          195 KKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH-NDVMEVLHKHGAKM  273 (351)
T ss_dssp             HHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC-HHHHHHHHHTTCCT
T ss_pred             HHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCC
Confidence                                                     344577788899999999999995 88889999999999


Q ss_pred             ccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          156 DAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       156 ~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      +.+|..|+||||+|....   ..+++++|.+.|.++..
T Consensus       274 n~~d~~g~t~L~~A~~~~---~~~~v~~Ll~~gad~~~  308 (351)
T 3utm_A          274 NALDSLGQTALHRAALAG---HLQTCRLLLSYGSDPSI  308 (351)
T ss_dssp             TCCCTTSCCHHHHHHHHT---CHHHHHHHHHTTCCTTC
T ss_pred             CCcCCCCCCHHHHHHHcC---cHHHHHHHHHcCCCCCC
Confidence            999999999999998655   56788888888877654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=8e-30  Score=210.30  Aligned_cols=156  Identities=18%  Similarity=0.121  Sum_probs=143.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHh
Q 042924           21 YGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVV  100 (355)
Q Consensus        21 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  100 (355)
                      .|.||||.|+..|+.++++.|++.+.+. +.++. .|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDE-EGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            5899999999999999999999998876 78887 9999999999999999999999999988 8889999999999999


Q ss_pred             cCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHH
Q 042924          101 SFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEI  180 (355)
Q Consensus       101 ~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i  180 (355)
                      .++.++++.|++    .|.+++.+|.+|+||||+|+..++ .+++++|+++|++++.+|.+|+||+++|....   ..++
T Consensus        79 ~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~---~~~~  150 (167)
T 3v31_A           79 KGYTDIVKMLLD----CGVDVNEYDWNGGTPLLYAVHGNH-VKCVKMLLESGADPTIETDSGYNSMDLAVALG---YRSV  150 (167)
T ss_dssp             HTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT---CHHH
T ss_pred             cCCHHHHHHHHH----CCCCCCcCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC---cHHH
Confidence            999999999999    788999999999999999999996 89999999999999999999999999999654   3456


Q ss_pred             HHHHHHc
Q 042924          181 QKLSKDV  187 (355)
Q Consensus       181 ~~~l~~~  187 (355)
                      +++|.+.
T Consensus       151 ~~~L~~~  157 (167)
T 3v31_A          151 QQVIESH  157 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666553

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=3.1e-30  Score=227.65  Aligned_cols=176  Identities=22%  Similarity=0.165  Sum_probs=150.7

Q ss_pred             HHHhccccccc----cCCCCChHHHHHHHc---CCHHHHHHhhccCCCcccc----------cccCCCchHHHHHHhcCC
Q 042924            7 LLEIKKNLIKE----TDQYGWTPIHYAAYY---GNYGTVNLLLETDQSASNI----------ADKDRKMTALHLAAGKGD   69 (355)
Q Consensus         7 lL~~~~~~~~~----~d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~----------~~~~~g~tpLh~Aa~~g~   69 (355)
                      .+...+.+++.    +|.+|+||||+|+..   |+.+++++|++.+++....          ++. .|.||||+|+..|+
T Consensus        24 ~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~  102 (256)
T 2etb_A           24 YLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFY-QGHSALHIAIEKRS  102 (256)
T ss_dssp             HHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTT-TTCCHHHHHHHTTC
T ss_pred             HHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccc-cCCCHHHHHHHcCC
Confidence            33456677888    899999999999999   9999999999988765222          223 79999999999999


Q ss_pred             HHHHHHHhhhCCccccccccC-------------CchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHH
Q 042924           70 ARIVEAIISKNPECYELVDNR-------------GWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLA  136 (355)
Q Consensus        70 ~~~v~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~  136 (355)
                      .+++++|++.++++ +.+|..             |+||||+|+.+|+.+++++|++... .|+++|.+|.+|+||||+|+
T Consensus       103 ~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~-~ga~~n~~d~~g~TpLh~A~  180 (256)
T 2etb_A          103 LQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH-QPASLEATDSLGNTVLHALV  180 (256)
T ss_dssp             HHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS-CCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-cCCCcCccCCCCCCHHHHHH
Confidence            99999999999998 777775             9999999999999999999999321 35789999999999999999


Q ss_pred             h--cCCchH-------HHHHHhccCccc-------ccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCC
Q 042924          137 A--IRPNEF-------DVDLVRKTQANY-------DAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGR  189 (355)
Q Consensus       137 ~--~~~~~~-------~~~lL~~~ga~~-------~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~  189 (355)
                      .  .++ .+       ++++|+++|+++       +.+|.+|+||+|+|....   ..+++++|.+.|.
T Consensus       181 ~~~~~~-~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g---~~~~v~~Ll~~g~  245 (256)
T 2etb_A          181 MIADNS-PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG---KIEIFRHILQREF  245 (256)
T ss_dssp             HHCCSC-HHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HcccCC-chhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhC---CHHHHHHHHhCCC
Confidence            9  554 66       899999999999       999999999999999765   5677787777543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=4.9e-30  Score=211.14  Aligned_cols=160  Identities=23%  Similarity=0.192  Sum_probs=144.6

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHH
Q 042924           18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHY   97 (355)
Q Consensus        18 ~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~   97 (355)
                      .|.+|.||||.|++.|+.++++.|++.+....+..+. .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   81 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHN   81 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc-CCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHH
Confidence            5788999999999999999999999976655466666 8999999999999999999999999998 8889999999999


Q ss_pred             HHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchH
Q 042924           98 AVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELK  177 (355)
Q Consensus        98 A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~  177 (355)
                      |+..++.+++++|++    .|.+++.+|.+|+||||+|+..++ .+++++|+++|++++.+|.+|+||+++|..+    .
T Consensus        82 A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~----~  152 (165)
T 3twr_A           82 ACSYGHYEVAELLVK----HGAVVNVADLWKFTPLHEAAAKGK-YEICKLLLQHGADPTKKNRDGNTPLDLVKDG----D  152 (165)
T ss_dssp             HHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCTGGGSCTT----C
T ss_pred             HHHcCcHHHHHHHHh----CCCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCcccCCCCCChhHhHhcC----C
Confidence            999999999999999    788999999999999999999996 8999999999999999999999999998764    3


Q ss_pred             HHHHHHHHHcC
Q 042924          178 EEIQKLSKDVG  188 (355)
Q Consensus       178 ~~i~~~l~~~~  188 (355)
                      .+++++|.+.|
T Consensus       153 ~~i~~~L~~~g  163 (165)
T 3twr_A          153 TDIQDLLRGDA  163 (165)
T ss_dssp             HHHHHHHHTC-
T ss_pred             hHHHHHHhhcc
Confidence            47888888755

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=6.2e-30  Score=228.69  Aligned_cols=164  Identities=18%  Similarity=0.188  Sum_probs=149.9

Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHH-----hcCCHHHHHHHhhhCCccccccc
Q 042924           14 LIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA-----GKGDARIVEAIISKNPECYELVD   88 (355)
Q Consensus        14 ~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa-----~~g~~~~v~~Ll~~~~~~~~~~d   88 (355)
                      .+|.+|.+|+||||+|+..|+.++++.|++.|+...+..+. .|.||||+|+     ..++.++++.|++.+.+. +..|
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~  180 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR-AGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKAS  180 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCT
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC-CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccC
Confidence            47899999999999999999999999999999844488887 9999999999     668999999999999777 7789


Q ss_pred             cCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhc-cCcccccccCCCCcHHH
Q 042924           89 NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRK-TQANYDAVNKQIVSVRH  167 (355)
Q Consensus        89 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~-~ga~~~~~n~~g~Tpl~  167 (355)
                      ..|+||||+|+.+|+.++++.|++    .|+++|.+|.+|+||||+|+..|+ .+++++|++ .|++++.+|.+|+||++
T Consensus       181 ~~g~tpLh~A~~~g~~~~v~~Ll~----~gad~n~~d~~G~TpLh~A~~~g~-~~iv~~Ll~~~gad~~~~d~~g~TpL~  255 (276)
T 4hbd_A          181 QAGQTALMLAVSHGRVDVVKALLA----CEADVNVQDDDGSTALMCACEHGH-KEIAGLLLAVPSCDISLTDRDGSTALM  255 (276)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCC-HHHHHHHHhcCCCCCcCcCCCCCCHHH
Confidence            999999999999999999999999    789999999999999999999996 899999998 89999999999999999


Q ss_pred             HHhhCCCchHHHHHHHHHHc
Q 042924          168 IFNYGYPELKEEIQKLSKDV  187 (355)
Q Consensus       168 ~a~~~~~~~~~~i~~~l~~~  187 (355)
                      +|....   ..+++++|.+.
T Consensus       256 ~A~~~g---~~~iv~~Ll~~  272 (276)
T 4hbd_A          256 VALDAG---QSEIASMLYSR  272 (276)
T ss_dssp             HHHHHT---CHHHHHHHHHH
T ss_pred             HHHHcC---CHHHHHHHHhc
Confidence            999665   45677777663

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.5e-29  Score=209.24  Aligned_cols=162  Identities=25%  Similarity=0.263  Sum_probs=145.5

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHH
Q 042924           16 KETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFL   95 (355)
Q Consensus        16 ~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L   95 (355)
                      ......+.+|||+|++.|+.+++++|++++.++ +.++. .|.||||+|+..|+.+++++|++.+.++ +..|..|+|||
T Consensus         8 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L   84 (169)
T 2y1l_E            8 HHHGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDA-SGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPL   84 (169)
T ss_dssp             -----CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             ccCCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHH
Confidence            345567889999999999999999999999887 77787 9999999999999999999999999988 88899999999


Q ss_pred             HHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCc
Q 042924           96 HYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPE  175 (355)
Q Consensus        96 h~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~  175 (355)
                      |+|+..|+.+++++|++    .|.+++.+|.+|+||||+|+..++ .+++++|+++|++++.+|.+|.||+++|....  
T Consensus        85 ~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~--  157 (169)
T 2y1l_E           85 RLAALFGHLEIVEVLLK----NGADVNANDMEGHTPLHLAAMFGH-LEIVEVLLKNGADVNAQDKFGKTAFDISIDNG--  157 (169)
T ss_dssp             HHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT--
T ss_pred             HHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhC--
Confidence            99999999999999999    788999999999999999999996 99999999999999999999999999999765  


Q ss_pred             hHHHHHHHHHHcC
Q 042924          176 LKEEIQKLSKDVG  188 (355)
Q Consensus       176 ~~~~i~~~l~~~~  188 (355)
                       ..+++++|.+.|
T Consensus       158 -~~~~~~~L~~~G  169 (169)
T 2y1l_E          158 -NEDLAEILQKLN  169 (169)
T ss_dssp             -CHHHHHHHHTC-
T ss_pred             -CHHHHHHHHHcC
Confidence             457777777643

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.96  E-value=4.4e-29  Score=217.45  Aligned_cols=163  Identities=25%  Similarity=0.240  Sum_probs=149.9

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcc
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC   83 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   83 (355)
                      +.++|.+.+..++.+|..|.||||+|+..|+.+++++|++.++...+..+. .|.||||+|+..|+.+++++|++.++++
T Consensus        59 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  137 (237)
T 3b7b_A           59 AVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKGSDI  137 (237)
T ss_dssp             HHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            334455567778999999999999999999999999999998544477787 8999999999999999999999999998


Q ss_pred             ccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCC
Q 042924           84 YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIV  163 (355)
Q Consensus        84 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~  163 (355)
                       +.+|..|+||||+|+..|+.++++.|++    .|.+++.+|.+|+||||+|++.++ .+++++|+++|++++.+|.+|+
T Consensus       138 -~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~gad~~~~d~~g~  211 (237)
T 3b7b_A          138 -NIRDNEENICLHWAAFSGCVDIAEILLA----AKCDLHAVNIHGDSPLHIAARENR-YDCVVLFLSRDSDVTLKNKEGE  211 (237)
T ss_dssp             -TCCCTTSCCHHHHHHHHCCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHHHTTC-HHHHHHHHTTTCCTTCCCTTSC
T ss_pred             -CccCCCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHhCC-HhHHHHHHHcCCCCCccCCCCC
Confidence             8889999999999999999999999999    788999999999999999999996 8999999999999999999999


Q ss_pred             cHHHHHhhCC
Q 042924          164 SVRHIFNYGY  173 (355)
Q Consensus       164 Tpl~~a~~~~  173 (355)
                      ||+|+|....
T Consensus       212 t~l~~A~~~~  221 (237)
T 3b7b_A          212 TPLQCASLNS  221 (237)
T ss_dssp             CHHHHSCTTC
T ss_pred             CHHHHHHHHH
Confidence            9999999665

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=1.4e-29  Score=228.41  Aligned_cols=183  Identities=23%  Similarity=0.148  Sum_probs=145.0

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|++. +.+++.+|.+|.||||+||..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|++.++
T Consensus        54 ~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~  130 (299)
T 1s70_B           54 EEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDN-EGWIPLHAAASCGYLDIAEYLISQGA  130 (299)
T ss_dssp             HHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence            356666655 5668999999999999999999999999999999987 78887 99999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChh-----------------------hhhhhccCCCCCCcHHHHHHhc
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPL-----------------------ARSLINEGDAKGNTPLHVLAAI  138 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~-----------------------~~~~~n~~d~~G~T~Lh~A~~~  138 (355)
                      ++ +..|..|.||||+|+..++.++++.++.....                       ........|..|+||||+|+..
T Consensus       131 ~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~  209 (299)
T 1s70_B          131 HV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK  209 (299)
T ss_dssp             CT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             CC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHC
Confidence            88 77788888888888888887777776653110                       0011123566788888888888


Q ss_pred             CCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          139 RPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       139 ~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                      |+ .+++++|++.|++++.+|.+|.||||+|+...   ..+++++|.+.|.++.
T Consensus       210 g~-~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~---~~~~v~~Ll~~gad~~  259 (299)
T 1s70_B          210 GY-TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG---KEEACRILVENLCDME  259 (299)
T ss_dssp             TC-HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTT---CHHHHHHHHHTTCCTT
T ss_pred             Cc-HHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcC---CHHHHHHHHHcCCCCC
Confidence            85 77888888888888888888888888888655   4567777777665543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=9.7e-30  Score=226.49  Aligned_cols=181  Identities=18%  Similarity=0.131  Sum_probs=136.2

Q ss_pred             hHHHHHHHhccc-------cccccCCCCChHHHHHHHcCCH-HHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHH
Q 042924            2 AALSKLLEIKKN-------LIKETDQYGWTPIHYAAYYGNY-GTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIV   73 (355)
Q Consensus         2 ~~v~~lL~~~~~-------~~~~~d~~G~tpLh~Aa~~g~~-~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v   73 (355)
                      +.|+.||+....       .++..|..|.||||+|+..++. ++++.|++.|+++ +.++. +|+||||+|+..|+.+++
T Consensus        25 ~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~-~G~TpLh~A~~~g~~~~v  102 (269)
T 4b93_B           25 EMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQ-DGSSPLHVAALHGRADLI  102 (269)
T ss_dssp             HHHHHHHTCC----------------------------------------CCCCT-TCCCT-TSCCHHHHHHHTTCTTHH
T ss_pred             HHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHcCcHHHH
Confidence            456777765543       3567888999999999998875 4789999999998 88887 999999999999999999


Q ss_pred             HHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCc
Q 042924           74 EAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQA  153 (355)
Q Consensus        74 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga  153 (355)
                      ++|++.++++ +.++.+|.||+|+|+..++.++++.|++    .|.++|.+|.+|+||||+|+..|+ .+++++|+++|+
T Consensus       103 ~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~----~g~~~n~~d~~g~TpL~~A~~~g~-~~~v~~Ll~~ga  176 (269)
T 4b93_B          103 PLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLD----SNAKPNKKDLSGNTPLIYACSGGH-HELVALLLQHGA  176 (269)
T ss_dssp             HHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTCCCHHHHHHHTTC-GGGHHHHHHTTC
T ss_pred             HHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHCCC-HHHHHHHHHCCC
Confidence            9999999998 8889999999999999999999999999    788999999999999999999996 899999999999


Q ss_pred             ccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          154 NYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       154 ~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      |+|.+|.+|.||||+|+..+   ..+++++|.+.|.++..
T Consensus       177 dvn~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~Gad~~~  213 (269)
T 4b93_B          177 SINASNNKGNTALHEAVIEK---HVFVVELLLLHGASVQV  213 (269)
T ss_dssp             CTTCBCTTSCBHHHHHHHTT---CHHHHHHHHHTTCCSCC
T ss_pred             CCCccccCCCcHHHHHHHcC---CHHHHHHHHHCCCCCCC
Confidence            99999999999999999766   56789999998877653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=1.5e-29  Score=218.89  Aligned_cols=163  Identities=26%  Similarity=0.254  Sum_probs=146.2

Q ss_pred             hHHHHHHHhcc-ccccc-cCCCCChHHHHHHHcCCHHHHHHhhccC--CCcccccccCCCchHHHHHHhcCCHHHHHHHh
Q 042924            2 AALSKLLEIKK-NLIKE-TDQYGWTPIHYAAYYGNYGTVNLLLETD--QSASNIADKDRKMTALHLAAGKGDARIVEAII   77 (355)
Q Consensus         2 ~~v~~lL~~~~-~~~~~-~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~--~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll   77 (355)
                      +.++.|++.++ .+++. +|..|+||||+|+..|+.++++.|++++  .+. +..+. .|.||||+|+..|+.+++++|+
T Consensus        50 ~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll  127 (228)
T 2dzn_A           50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITN-QGVTCLHLAVGKKWFEVSQFLI  127 (228)
T ss_dssp             HHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCc-CCCCHHHHHHHcCCHhHHHHHH
Confidence            45666666651 33455 8899999999999999999999999998  555 66776 8999999999999999999999


Q ss_pred             hhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhh-hhhccCCCCCCcHHHHHHhcCCchHHHHHHh-ccCccc
Q 042924           78 SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLAR-SLINEGDAKGNTPLHVLAAIRPNEFDVDLVR-KTQANY  155 (355)
Q Consensus        78 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~-~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~-~~ga~~  155 (355)
                      +.+.++ +.+|..|+||||+|+..|+.++++.|++    .| .++|.+|.+|+||||+|+..++ .+++++|+ +.|+++
T Consensus       128 ~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~d~~g~t~L~~A~~~~~-~~~v~~Ll~~~ga~~  201 (228)
T 2dzn_A          128 ENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCG----LGKSAVNWQDKQGWTPLFHALAEGH-GDAAVLLVEKYGAEY  201 (228)
T ss_dssp             HTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHT----TTCCCSCCCCTTSCCHHHHHHHTTC-HHHHHHHHHHHCCCS
T ss_pred             HcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHh----cCcccccCcCCCCCCHHHHHHHcCC-HHHHHHHHHhcCCCC
Confidence            999998 8899999999999999999999999999    66 7899999999999999999996 88999998 899999


Q ss_pred             ccccCCCCcHHHHHhhC
Q 042924          156 DAVNKQIVSVRHIFNYG  172 (355)
Q Consensus       156 ~~~n~~g~Tpl~~a~~~  172 (355)
                      +.+|.+|+||+++|.+.
T Consensus       202 ~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          202 DLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             CCBCTTSCBGGGGCSST
T ss_pred             CccCCCCCcHHHHHHHH
Confidence            99999999999999743

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.8e-29  Score=209.14  Aligned_cols=158  Identities=18%  Similarity=0.081  Sum_probs=141.9

Q ss_pred             CChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhc
Q 042924           22 GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVS  101 (355)
Q Consensus        22 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  101 (355)
                      +.||||.|+..|+.++++.|++.++...+.++. .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence            578999999999999999999998886677887 9999999999999999999999999988 88899999999999999


Q ss_pred             CChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHH
Q 042924          102 FRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQ  181 (355)
Q Consensus       102 ~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~  181 (355)
                      ++.++++.|++    .|.+++.+|.+|+||||+|+..++ .+++++|+++|++++.+|.+|.||+|+|....   ..+++
T Consensus        80 ~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~---~~~~~  151 (172)
T 3v30_A           80 GYTDIVGLLLE----RDVDINIYDWNGGTPLLYAVRGNH-VKCVEALLARGADLTTEADSGYTPMDLAVALG---YRKVQ  151 (172)
T ss_dssp             TCHHHHHHHHT----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT---CHHHH
T ss_pred             CCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCccccCCCCCCHHHHHHHhC---cHHHH
Confidence            99999999999    788999999999999999999996 89999999999999999999999999999655   45667


Q ss_pred             HHHHHcCC
Q 042924          182 KLSKDVGR  189 (355)
Q Consensus       182 ~~l~~~~~  189 (355)
                      ++|.+.+.
T Consensus       152 ~~L~~~~~  159 (172)
T 3v30_A          152 QVIENHIL  159 (172)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.4e-29  Score=209.91  Aligned_cols=156  Identities=24%  Similarity=0.320  Sum_probs=142.0

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.++..++..++.+|..|+||||+|+..|+.+++++|+++|+++ +..+. .|.||||+|+..|+.+++++|++.++
T Consensus        16 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~   93 (172)
T 3v30_A           16 DQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAK-ERESALSLASTGGYTDIVGLLLERDV   93 (172)
T ss_dssp             HHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcc-cCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            57889999988889999999999999999999999999999999987 77887 99999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCC
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ  161 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~  161 (355)
                      ++ +.+|..|+||||+|+.+++.++++.|++    .|++++.+|.+|+||||+|+..++ .+++++|+++|+++..+|..
T Consensus        94 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~-~~~~~~L~~~~~~~~~~~~~  167 (172)
T 3v30_A           94 DI-NIYDWNGGTPLLYAVRGNHVKCVEALLA----RGADLTTEADSGYTPMDLAVALGY-RKVQQVIENHILKLFQSNLV  167 (172)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHHHHHHHSCC---
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCHHHHHHHhCc-HHHHHHHHHHHHHHhcccCC
Confidence            98 8889999999999999999999999999    788999999999999999999995 99999999999999999999


Q ss_pred             CCcH
Q 042924          162 IVSV  165 (355)
Q Consensus       162 g~Tp  165 (355)
                      |.||
T Consensus       168 ~~~p  171 (172)
T 3v30_A          168 PADP  171 (172)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            9987

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=8e-30  Score=222.44  Aligned_cols=172  Identities=18%  Similarity=0.131  Sum_probs=151.4

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCC----CcccccccCCCchHHHHHHhcCCHHHHHHHhhh
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQ----SASNIADKDRKMTALHLAAGKGDARIVEAIISK   79 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~----~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~   79 (355)
                      +.++|.+.+..++.+|.+|.||||+|+..|+.++++.|++.++    +. +..+. .|.||||+|+..|+.+++++|++.
T Consensus        61 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~  138 (241)
T 1k1a_A           61 VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNY-DGLTALHVAVNTECQETVQLLLER  138 (241)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCc-CCCcHHHHHHHcCCHHHHHHHHHc
Confidence            3344455677789999999999999999999999999999887    44 66676 899999999999999999999999


Q ss_pred             CCccccccc-cCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccc
Q 042924           80 NPECYELVD-NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAV  158 (355)
Q Consensus        80 ~~~~~~~~d-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~  158 (355)
                      ++++ +..| ..|+||||+|+.+|+.++++.|++    .|.+++.+|.+|+||||+|+..|+ .+++++|+++|++++.+
T Consensus       139 g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~~  212 (241)
T 1k1a_A          139 GADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQ----HGANVNAQMYSGSSALHSASGRGL-LPLVRTLVRSGADSSLK  212 (241)
T ss_dssp             TCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHHTC-HHHHHHHHHTTCCTTCC
T ss_pred             CCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHHhcCCCCCCc
Confidence            9998 5566 889999999999999999999999    788999999999999999999996 89999999999999999


Q ss_pred             cCCCCcHHHHHhhCCCchHHHHHHHHHH
Q 042924          159 NKQIVSVRHIFNYGYPELKEEIQKLSKD  186 (355)
Q Consensus       159 n~~g~Tpl~~a~~~~~~~~~~i~~~l~~  186 (355)
                      |.+|+||+|+|....   ..++++.|.+
T Consensus       213 ~~~g~tpl~~A~~~~---~~~i~~~l~~  237 (241)
T 1k1a_A          213 NCHNDTPLMVARSRR---VIDILRGKAT  237 (241)
T ss_dssp             CTTSCCTTTTCSSHH---HHHHHTC---
T ss_pred             CCCCCCHHHHHHhcC---cHHHHhhhcc
Confidence            999999999998543   5566666554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.5e-29  Score=211.18  Aligned_cols=165  Identities=19%  Similarity=0.189  Sum_probs=149.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHH
Q 042924           19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYA   98 (355)
Q Consensus        19 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   98 (355)
                      +.++.+|||.|+..|+.++++.|++.++...+.++. .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|
T Consensus         2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLA   79 (179)
T ss_dssp             -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence            357899999999999999999999987665588887 9999999999999999999999999998 88899999999999


Q ss_pred             HhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHH
Q 042924           99 VVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKE  178 (355)
Q Consensus        99 ~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~  178 (355)
                      +..|+.++++.|++    .|.++|.+|.+|+||||+|+..++ .+++++|+++|++++.+|.+|+||+++|....   ..
T Consensus        80 ~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~---~~  151 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQ----YKADINAVNEHGNVPLHYACFWGQ-DQVAEDLVANGALVSICNKYGEMPVDKAKAPL---RE  151 (179)
T ss_dssp             HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHH---HH
T ss_pred             HHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCcchhccCCCCcHHHHHHHH---HH
Confidence            99999999999999    788999999999999999999996 89999999999999999999999999998644   77


Q ss_pred             HHHHHHHHcCCCCCC
Q 042924          179 EIQKLSKDVGRGQYS  193 (355)
Q Consensus       179 ~i~~~l~~~~~~~~~  193 (355)
                      ++.++|.+.|.++..
T Consensus       152 ~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          152 LLRERAEKMGQNLNR  166 (179)
T ss_dssp             HHHHHHHHTTCCCSC
T ss_pred             HHHHHHHHhhcCccc
Confidence            899999998877754

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=2.7e-29  Score=233.15  Aligned_cols=176  Identities=16%  Similarity=0.116  Sum_probs=117.9

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCccc-------------------------------
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASN-------------------------------   50 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~-------------------------------   50 (355)
                      +.++.|++ .+.+++.+|.+|+||||+|+..|+.+++++|++.+++...                               
T Consensus        34 ~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  112 (364)
T 3ljn_A           34 DEVRRLIE-TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQ  112 (364)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHH-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCC
Confidence            34555555 4667899999999999999999999999999998875421                               


Q ss_pred             ---c-----------------cccCCCchHHHHHHhcC--CHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHH
Q 042924           51 ---I-----------------ADKDRKMTALHLAAGKG--DARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLT  108 (355)
Q Consensus        51 ---~-----------------~~~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~  108 (355)
                         .                 .+. .|.||||+|+..|  +.+++++|++.+.++ +.+|..|+||||+|+.+|+.++++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~  190 (364)
T 3ljn_A          113 MPESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALD  190 (364)
T ss_dssp             CHHHHHTCCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHhhcchHhhhhhccccCCC-CCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHH
Confidence               0                 333 5666666666666  666666666666665 556666666666666666666666


Q ss_pred             HHHhcChhhhhh-----hccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHH
Q 042924          109 NLLENNPLARSL-----INEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKL  183 (355)
Q Consensus       109 ~Ll~~~~~~~~~-----~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~  183 (355)
                      +|++    .+.+     +|.+|.+|+||||+|+..|+ .+++++|+++|+|++.+|.+|+|||++|+...   ..+++++
T Consensus       191 ~Ll~----~g~~~~~~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g---~~~~v~~  262 (364)
T 3ljn_A          191 LMMD----TVPSKSSLRLDYANKQGNSHLHWAILINW-EDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA---MVLLTKE  262 (364)
T ss_dssp             HHHH----HCSCSSSCCTTCCCTTCCCTTHHHHTTTC-HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTC---CHHHHHH
T ss_pred             HHHh----cccccccccccccCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC---hHHHHHH
Confidence            6666    3334     66666666666666666664 66666666666666666666666666666544   3455555


Q ss_pred             HHHcC
Q 042924          184 SKDVG  188 (355)
Q Consensus       184 l~~~~  188 (355)
                      |.+.+
T Consensus       263 Ll~~~  267 (364)
T 3ljn_A          263 LLQKT  267 (364)
T ss_dssp             HHHHS
T ss_pred             HHHcC
Confidence            55543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.7e-29  Score=207.08  Aligned_cols=159  Identities=23%  Similarity=0.251  Sum_probs=144.8

Q ss_pred             CCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHH
Q 042924           20 QYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAV   99 (355)
Q Consensus        20 ~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~   99 (355)
                      +...||||.|+..|+.++++.|++++.++ +.++. .|.||||+|+. |+.+++++|++.++++ +.+|..|+||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNV-NAQNG-FGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCT-TSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCc-cCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            45679999999999999999999999887 77787 99999999999 9999999999999988 888999999999999


Q ss_pred             hcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcc-cccccCCCCcHHHHHhhCCCchHH
Q 042924          100 VSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQAN-YDAVNKQIVSVRHIFNYGYPELKE  178 (355)
Q Consensus       100 ~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~-~~~~n~~g~Tpl~~a~~~~~~~~~  178 (355)
                      .+|+.++++.|++    .|.+++.+|.+|+||||+|+..|+ .+++++|+++|++ ++.+|.+|+||+++|....   ..
T Consensus        79 ~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~---~~  150 (162)
T 1ihb_A           79 RAGFLDTLQTLLE----FQADVNIEDNEGNLPLHLAAKEGH-LRVVEFLVKHTASNVGHRNHKGDTACDLARLYG---RN  150 (162)
T ss_dssp             HHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT---CH
T ss_pred             HcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcC---CH
Confidence            9999999999999    788999999999999999999996 9999999999998 5999999999999999765   56


Q ss_pred             HHHHHHHHcCCC
Q 042924          179 EIQKLSKDVGRG  190 (355)
Q Consensus       179 ~i~~~l~~~~~~  190 (355)
                      +++++|.+.|++
T Consensus       151 ~~~~~Ll~~GAd  162 (162)
T 1ihb_A          151 EVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHhCCC
Confidence            888888887753

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=6.3e-29  Score=223.13  Aligned_cols=176  Identities=19%  Similarity=0.148  Sum_probs=147.4

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE   82 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   82 (355)
                      .++.|++ .+.+++.+|.+|+||||+|+..|+.+++++|++.++++ +.++. .|.||||+|+..|+.+++++|++.+++
T Consensus        74 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~  150 (285)
T 3d9h_A           74 SLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTA-DWHTPLFNACVSGSWDCVNLLLQHGAS  150 (285)
T ss_dssp             HHHHHHH-TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHH-CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCHHHHHHHHHHCCCC
Confidence            4555555 45668889999999999999999999999999988877 77776 889999999999999999999998887


Q ss_pred             cccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCC
Q 042924           83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQI  162 (355)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g  162 (355)
                      + +. +.+|+||||+|+..|+.++++.|++    .|.+++.+|.+|+||||+|+..|+ .+++++|++.|++++. |..|
T Consensus       151 ~-~~-~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~-~~~g  222 (285)
T 3d9h_A          151 V-QP-ESDLASPIHEAARRGHVECVNSLIA----YGGNIDHKISHLGTPLYLACENQQ-RACVKKLLESGADVNQ-GKGQ  222 (285)
T ss_dssp             S-SC-SCTTSCHHHHHHHHTCHHHHHHHHH----TTCCTTCCBTTTBCHHHHHHHTTC-HHHHHHHHHTTCCTTC-CBTT
T ss_pred             C-CC-CCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCc-HHHHHHHHHCCCCCCC-CCCC
Confidence            7 33 4558999999999999999999998    678889999999999999999985 8888999999999984 8889


Q ss_pred             CcHHHHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          163 VSVRHIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       163 ~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                      .||||+|....   ..+++++|.+.|.++.
T Consensus       223 ~t~L~~A~~~~---~~~~v~~Ll~~gad~~  249 (285)
T 3d9h_A          223 DSPLHAVVRTA---SEELACLLMDFGADTQ  249 (285)
T ss_dssp             BCHHHHHHHTT---CHHHHHHHHHTTCCTT
T ss_pred             CCHHHHHHHcC---CHHHHHHHHHCCCCCC
Confidence            99999998765   4578888888776654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=3.8e-30  Score=235.64  Aligned_cols=166  Identities=18%  Similarity=0.134  Sum_probs=143.3

Q ss_pred             HHHHHHHhccccccc-cCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCC---HHHHHHHhh
Q 042924            3 ALSKLLEIKKNLIKE-TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGD---ARIVEAIIS   78 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~-~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~---~~~v~~Ll~   78 (355)
                      .+.++|...+.++|. +|.+|+||||+||..|+.+++++|+++|+++ +.++. .|+||||+|+..|+   .++++.|++
T Consensus       111 ~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~-~g~TpLh~A~~~g~~~~~~~~~~ll~  188 (327)
T 1sw6_A          111 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDN-MGESCLVKAVKSVNNYDSGTFEALLD  188 (327)
T ss_dssp             HHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHH
T ss_pred             HHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHhcccccHHHHHHHHH
Confidence            355666777888999 8999999999999999999999999999998 88887 99999999999999   788888888


Q ss_pred             hCCccccccccCCchHHHHHHh----cCChhHHHHHHhcChhh----------------h--------------------
Q 042924           79 KNPECYELVDNRGWNFLHYAVV----SFRVEKLTNLLENNPLA----------------R--------------------  118 (355)
Q Consensus        79 ~~~~~~~~~d~~g~t~Lh~A~~----~~~~~~~~~Ll~~~~~~----------------~--------------------  118 (355)
                      .+....+.+|..|+||||+|++    .|+.++++.|++.....                +                    
T Consensus       189 ~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~  268 (327)
T 1sw6_A          189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL  268 (327)
T ss_dssp             HHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSH
T ss_pred             hhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHH
Confidence            8744458899999999999999    89999999998742100                1                    


Q ss_pred             -----hhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhh
Q 042924          119 -----SLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNY  171 (355)
Q Consensus       119 -----~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~  171 (355)
                           .++|.+|.+|+||||+|+..|+ .+++++|+++|+|++.+|.+|+||||+|+.
T Consensus       269 ~~Ll~~~~n~~d~~G~TpLh~A~~~g~-~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          269 KWIIANMLNAQDSNGDTCLNIAARLGN-ISIVDALLDYGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             HHHHHHTTTCCCTTSCCHHHHHHHHCC-HHHHHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred             HHHHHhCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence                 1488889999999999999995 888999999999999999999999998874

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=3.6e-29  Score=223.30  Aligned_cols=162  Identities=20%  Similarity=0.118  Sum_probs=133.8

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCc----------------------------------
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSA----------------------------------   48 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~----------------------------------   48 (355)
                      +++. |.+++.+++.+|..|+||||+|+..|+.+++++|++++++.                                  
T Consensus        60 ~v~~-Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (282)
T 1oy3_D           60 TVEK-LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN  138 (282)
T ss_dssp             HHHH-HHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------
T ss_pred             HHHH-HHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccch
Confidence            4444 45567779999999999999999999999999999987652                                  


Q ss_pred             ------------ccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcccccccc-CCchHHHHHHhcCChhHHHHHHhcCh
Q 042924           49 ------------SNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDN-RGWNFLHYAVVSFRVEKLTNLLENNP  115 (355)
Q Consensus        49 ------------~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~~~~Ll~~~~  115 (355)
                                  .+.++. .|.||||+|+..|+.+++++|++.++++ +.++. .|+||||+|+.+|+.+++++|++   
T Consensus       139 ~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~---  213 (282)
T 1oy3_D          139 EEEPRDEDWRLQLEAENY-DGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLK---  213 (282)
T ss_dssp             -----CCCGGGGTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHH---
T ss_pred             hhhhhhhhhhhcCCCcCC-CCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHH---
Confidence                        244555 8999999999999999999999999998 56664 59999999999999999999999   


Q ss_pred             hhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhC
Q 042924          116 LARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYG  172 (355)
Q Consensus       116 ~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~  172 (355)
                       .|++++.+|.+|+||||+|+..++ .+++++|+++|++++.+|.+|.||++++...
T Consensus       214 -~gad~~~~d~~g~tpL~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          214 -AGADPTARMYGGRTPLGSALLRPN-PILARLLRAHGAPEPEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             -TTCCTTCCCTTSCCHHHHHHTSSC-HHHHHHHHHTTCCCCCCC-------------
T ss_pred             -cCCCCcccccCCCCHHHHHHHcCC-cHHHHHHHHcCCCcCcCCCcccccccccCCc
Confidence             789999999999999999999996 9999999999999999999999999999843

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=9.2e-30  Score=226.86  Aligned_cols=185  Identities=21%  Similarity=0.195  Sum_probs=151.4

Q ss_pred             HHHHHHHh---cccccc----ccCCCCChHHHHHHHc---CCHHHHHHhhccCCCcc------cc----cccCCCchHHH
Q 042924            3 ALSKLLEI---KKNLIK----ETDQYGWTPIHYAAYY---GNYGTVNLLLETDQSAS------NI----ADKDRKMTALH   62 (355)
Q Consensus         3 ~v~~lL~~---~~~~~~----~~d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~------~~----~~~~~g~tpLh   62 (355)
                      .++.|++.   .+..++    .+|.+|+||||+|+..   |+.+++++|++.|++..      +.    .+. .|.||||
T Consensus        28 ~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~-~g~tpL~  106 (273)
T 2pnn_A           28 ELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYY-KGQTALH  106 (273)
T ss_dssp             TTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTT-TTCCHHH
T ss_pred             HHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccC-CCCCHHH
Confidence            34555552   444444    4589999999999987   99999999999876431      11    344 8999999


Q ss_pred             HHHhcCCHHHHHHHhhhCCcccccccc--------------CCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCC
Q 042924           63 LAAGKGDARIVEAIISKNPECYELVDN--------------RGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKG  128 (355)
Q Consensus        63 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G  128 (355)
                      +|+..|+.+++++|++.++++ +.+|.              .|+||||+|+.+|+.+++++|++... .|+++|.+|.+|
T Consensus       107 ~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~gad~~~~d~~g  184 (273)
T 2pnn_A          107 IAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW-QPADISARDSVG  184 (273)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS-CCCCTTCCCTTS
T ss_pred             HHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-CCCCceeeCCCC
Confidence            999999999999999999998 66776              79999999999999999999999321 257899999999


Q ss_pred             CcHHHHHHhcCCc--------hHHHHHHhccCcccc-------cccCCCCcHHHHHhhCCCchHHHHHHHHHHcCC-CCC
Q 042924          129 NTPLHVLAAIRPN--------EFDVDLVRKTQANYD-------AVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGR-GQY  192 (355)
Q Consensus       129 ~T~Lh~A~~~~~~--------~~~~~lL~~~ga~~~-------~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~-~~~  192 (355)
                      +||||+|+..++.        .+++++|+++|++++       .+|.+|+||||+|+...   ..+++++|.+.|+ +|.
T Consensus       185 ~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g---~~~iv~~Ll~~ga~dp~  261 (273)
T 2pnn_A          185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG---KIGVLAYILQREIHEPE  261 (273)
T ss_dssp             CCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT---CHHHHHHHHHHHTC---
T ss_pred             CcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhC---hHHHHHHHHHCCCCCch
Confidence            9999999998853        578899999999997       59999999999999766   5688899988877 554


Q ss_pred             C
Q 042924          193 S  193 (355)
Q Consensus       193 ~  193 (355)
                      .
T Consensus       262 ~  262 (273)
T 2pnn_A          262 C  262 (273)
T ss_dssp             -
T ss_pred             h
Confidence            3

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=1e-28  Score=214.51  Aligned_cols=165  Identities=21%  Similarity=0.175  Sum_probs=145.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHhhcc-CCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccc----cccccCCchHH
Q 042924           21 YGWTPIHYAAYYGNYGTVNLLLET-DQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECY----ELVDNRGWNFL   95 (355)
Q Consensus        21 ~G~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~g~t~L   95 (355)
                      .|+||||+|++.|+.++++.|++. +.++ +.++. .|+||||+|+..|+.+++++|++.+++..    +.+|.+|+|||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L   79 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGA-MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL   79 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCC-CCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence            589999999999999999999998 6666 88887 99999999999999999999999998763    45677999999


Q ss_pred             HHHHhcCChhHHHHHHhcChhhhhhhccCCC-------------CCCcHHHHHHhcCCchHHHHHHhccCcccccccCCC
Q 042924           96 HYAVVSFRVEKLTNLLENNPLARSLINEGDA-------------KGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQI  162 (355)
Q Consensus        96 h~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~-------------~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g  162 (355)
                      |+|+.+|+.++++.|++    .|.+++.++.             +|+||||+|+..|+ .+++++|+++|++++.+|.+|
T Consensus        80 ~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~~d~~g  154 (232)
T 2rfa_A           80 HIAVINQNVNLVRALLA----RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS-EEIVRLLIEHGADIRAQDSLG  154 (232)
T ss_dssp             HHHHHTTCHHHHHHHHH----TTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTC-HHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHcCCHHHHHHHHh----CCCCCCcccCCcceeecccccccCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCCCCCCC
Confidence            99999999999999999    6677777765             79999999999996 999999999999999999999


Q ss_pred             CcHHHHHhhCCC-chHHHHHHHHHHcCCCCC
Q 042924          163 VSVRHIFNYGYP-ELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       163 ~Tpl~~a~~~~~-~~~~~i~~~l~~~~~~~~  192 (355)
                      .||||+|+.... +...+++++|.+.|..+.
T Consensus       155 ~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          155 NTVLHILILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             CCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             CCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence            999999996542 333556689999887664

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=4.5e-29  Score=202.86  Aligned_cols=151  Identities=20%  Similarity=0.123  Sum_probs=138.5

Q ss_pred             CChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhc
Q 042924           22 GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVS  101 (355)
Q Consensus        22 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  101 (355)
                      +.||||.|++.|+.++++.|++.+.+. + .+. .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCT-TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            468999999999999999999998865 3 455 8999999999999999999999999988 88899999999999999


Q ss_pred             CChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHH
Q 042924          102 FRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQ  181 (355)
Q Consensus       102 ~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~  181 (355)
                      |+.+++++|++    .|.+++.+|.+|+||||+|+..++ .+++++|+++|++++.+|.+|+||+++|....   ..+++
T Consensus        78 ~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~---~~~i~  149 (153)
T 1awc_B           78 GHANIVEVLLK----HGADVNAKDMLKMTALHWATEHNH-QEVVELLIKYGADVHTQSKFCKTAFDISIDNG---NEDLA  149 (153)
T ss_dssp             TCHHHHHHHHT----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT---CHHHH
T ss_pred             ChHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCccccCCCCCCHHHHHHHcC---CHHHH
Confidence            99999999999    788999999999999999999996 89999999999999999999999999999765   44566


Q ss_pred             HHH
Q 042924          182 KLS  184 (355)
Q Consensus       182 ~~l  184 (355)
                      ++|
T Consensus       150 ~~L  152 (153)
T 1awc_B          150 EIL  152 (153)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            655

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=7.4e-30  Score=225.68  Aligned_cols=176  Identities=23%  Similarity=0.169  Sum_probs=147.9

Q ss_pred             hccccccccC----CCCChHHHHHH---HcCCHHHHHHhhccCCCc----------ccccccCCCchHHHHHHhcCCHHH
Q 042924           10 IKKNLIKETD----QYGWTPIHYAA---YYGNYGTVNLLLETDQSA----------SNIADKDRKMTALHLAAGKGDARI   72 (355)
Q Consensus        10 ~~~~~~~~~d----~~G~tpLh~Aa---~~g~~~~v~~Ll~~~~~~----------~~~~~~~~g~tpLh~Aa~~g~~~~   72 (355)
                      ..+..++..+    .+|+||||+|+   +.|+.+++++|++.+++.          .+..+. .|+||||+|+..|+.++
T Consensus        30 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~  108 (260)
T 3jxi_A           30 THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY-RGQTALHIAIERRCKHY  108 (260)
T ss_dssp             HHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE-ESBCHHHHHHHTTCHHH
T ss_pred             hcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc-CCCCHHHHHHHcCCHHH
Confidence            4555566555    78999999999   779999999999987542          123333 89999999999999999


Q ss_pred             HHHHhhhCCccccccc--------------cCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhc
Q 042924           73 VEAIISKNPECYELVD--------------NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI  138 (355)
Q Consensus        73 v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~  138 (355)
                      +++|++.++++ +.+|              ..|+||||+|+..|+.+++++|++... .|+++|.+|.+|+||||+|+..
T Consensus       109 v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~ga~~~~~d~~g~TpLh~A~~~  186 (260)
T 3jxi_A          109 VELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH-KQADLRRQDSRGNTVLHALVAI  186 (260)
T ss_dssp             HHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS-CCCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-cCCCCcccCCCCCcHHHHHHHh
Confidence            99999999998 6677              689999999999999999999999321 3578999999999999999988


Q ss_pred             CCc--------hHHHHHHhccCccc-------ccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCC
Q 042924          139 RPN--------EFDVDLVRKTQANY-------DAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       139 ~~~--------~~~~~lL~~~ga~~-------~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~  191 (355)
                      ++.        .+++++|+++|+++       +.+|.+|+||||+|+...   ..+++++|.++|..+
T Consensus       187 ~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g---~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG---KIGIFQHIIRREIAD  251 (260)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred             ccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcC---CHHHHHHHHHhCCCc
Confidence            753        47889999999999       789999999999999766   567888888765443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=3.4e-28  Score=216.85  Aligned_cols=180  Identities=18%  Similarity=0.085  Sum_probs=131.1

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE   82 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   82 (355)
                      +++.|+ +.+.+++.+|.+|.||||+|+..|+.+++++|+++|.++ +.++. .|.||||+|+..|+.+++++|++.+++
T Consensus        54 ~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~  130 (285)
T 1wdy_A           54 IVELLL-RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDF-YGFTAFMEAAVYGKVKALKFLYKRGAN  130 (285)
T ss_dssp             HHHHHH-HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHH-HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCc-ccCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence            344444 456667888888888888888888888888888888776 66666 788888888888888888888888777


Q ss_pred             ccccc----------ccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCc---hHHHHHHh
Q 042924           83 CYELV----------DNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPN---EFDVDLVR  149 (355)
Q Consensus        83 ~~~~~----------d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~---~~~~~lL~  149 (355)
                      + +..          +..|.||||+|+..|+.++++.|++.   .+.+++.+|..|+||||+|+..++.   .+++++|+
T Consensus       131 ~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll  206 (285)
T 1wdy_A          131 V-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL  206 (285)
T ss_dssp             T-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHH
T ss_pred             c-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHH
Confidence            6 443          66788888888888888888888873   2567777777777777777777642   45667777


Q ss_pred             ccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHH-cCCCCC
Q 042924          150 KTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKD-VGRGQY  192 (355)
Q Consensus       150 ~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~-~~~~~~  192 (355)
                      ++|++++.+|.+|.||+|+|....   ..+++++|.+ .|.++.
T Consensus       207 ~~g~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~~g~~~~  247 (285)
T 1wdy_A          207 DHGADVNVRGERGKTPLILAVEKK---HLGLVQRLLEQEHIEIN  247 (285)
T ss_dssp             HTTCCSSCCCTTSCCHHHHHHHTT---CHHHHHHHHHSSSCCTT
T ss_pred             HcCCCCCCcCCCCCcHHHHHHHcC---CHHHHHHHHhccCCCcc
Confidence            777777777777777777777554   3455666655 454443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=1.6e-28  Score=220.50  Aligned_cols=169  Identities=20%  Similarity=0.172  Sum_probs=150.5

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcc
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC   83 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   83 (355)
                      +.++|.+.+.+++.+|.+|.||||+|+..|+.+++++|++.+.+. +. +. .|.||||+|+..|+.+++++|++.++++
T Consensus       107 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  183 (285)
T 3d9h_A          107 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ES-DLASPIHEAARRGHVECVNSLIAYGGNI  183 (285)
T ss_dssp             HHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SC-TTSCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-CC-CC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            334455567889999999999999999999999999999999876 43 33 6999999999999999999999999998


Q ss_pred             ccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCC
Q 042924           84 YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIV  163 (355)
Q Consensus        84 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~  163 (355)
                       +.+|.+|+||||+|+.+|+.++++.|++    .|.+++. |.+|+||||+|+..++ .+++++|+++|++++.+|.+|+
T Consensus       184 -~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~-~~~g~t~L~~A~~~~~-~~~v~~Ll~~gad~~~~d~~g~  256 (285)
T 3d9h_A          184 -DHKISHLGTPLYLACENQQRACVKKLLE----SGADVNQ-GKGQDSPLHAVVRTAS-EELACLLMDFGADTQAKNAEGK  256 (285)
T ss_dssp             -TCCBTTTBCHHHHHHHTTCHHHHHHHHH----TTCCTTC-CBTTBCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSC
T ss_pred             -CCcCCCCCCHHHHHHHcCcHHHHHHHHH----CCCCCCC-CCCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCCcCCCCC
Confidence             8899999999999999999999999999    6778884 8999999999999996 8999999999999999999999


Q ss_pred             cHHHHHhhCCCchHHHHHHHHHHc
Q 042924          164 SVRHIFNYGYPELKEEIQKLSKDV  187 (355)
Q Consensus       164 Tpl~~a~~~~~~~~~~i~~~l~~~  187 (355)
                      ||+|+|...     .++.++|.+.
T Consensus       257 t~l~~A~~~-----~~~~~~Ll~~  275 (285)
T 3d9h_A          257 RPVELVPPE-----SPLAQLFLER  275 (285)
T ss_dssp             CGGGGSCTT-----SHHHHHHHHH
T ss_pred             CHHHHhcCc-----cHHHHHHHHh
Confidence            999999843     3566776664

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=8.9e-29  Score=222.16  Aligned_cols=156  Identities=21%  Similarity=0.142  Sum_probs=98.0

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE   82 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   82 (355)
                      .+.++|..+  .++.+|.+|+||||+|+..|+.++++.|++.|+++ +..   +|.||||+|+..|+.+++++|++.+++
T Consensus        14 ~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~   87 (285)
T 3kea_A           14 QLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL---ENEFPLHQAATLEDTKIVKILLFSGLD   87 (285)
T ss_dssp             HHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC---TTCCHHHHHTTSSSCHHHHHHHHTTCC
T ss_pred             HHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC---CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            455566554  35677777777777777777777777777776554 222   466777777777777777777777766


Q ss_pred             cccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCC-CcHHHHHHhcCCchHHHHHHhccCcccccccCC
Q 042924           83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKG-NTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ  161 (355)
Q Consensus        83 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G-~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~  161 (355)
                      + +.+|..|+||||+|+.+|+.+++++|++    .|++++.+|.+| +||||+|+..|+ .+++++|+++|++.... ..
T Consensus        88 ~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~-~~  160 (285)
T 3kea_A           88 D-SQFDDKGNTALYYAVDSGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLND-VSIVSYFLSEIPSTFDL-AI  160 (285)
T ss_dssp             T-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTC-HHHHHHHHTTSCTTCCC-ST
T ss_pred             C-CCcCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCC-HHHHHHHHhCCCccccc-cC
Confidence            6 5566677777777777777777777776    556666666666 566666666553 55555555555444211 14


Q ss_pred             CCcHHHHHhh
Q 042924          162 IVSVRHIFNY  171 (355)
Q Consensus       162 g~Tpl~~a~~  171 (355)
                      |.||||+|+.
T Consensus       161 g~t~L~~A~~  170 (285)
T 3kea_A          161 LLSCIHITIK  170 (285)
T ss_dssp             HHHHHHHHHH
T ss_pred             CccHHHHHHH
Confidence            5555555553

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=5.6e-28  Score=229.59  Aligned_cols=173  Identities=25%  Similarity=0.252  Sum_probs=127.9

Q ss_pred             hccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcccccccc
Q 042924           10 IKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDN   89 (355)
Q Consensus        10 ~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~   89 (355)
                      ..+..++.++.+|.||||+|+..|+.++++.|++.+.+. +..+. .|.||||+|+..|+.+++++|++.+++. +..|.
T Consensus       200 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~  276 (437)
T 1n11_A          200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESV-QGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNK  276 (437)
T ss_dssp             GGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT
T ss_pred             hCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCC
Confidence            334445555566666666666666666666666666554 55554 6777777777777777777777777766 66777


Q ss_pred             CCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHH
Q 042924           90 RGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIF  169 (355)
Q Consensus        90 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a  169 (355)
                      .|+||||+|++.|+.++++.|++    .|.++|.+|..|+||||+|+..|+ .+++++|+++|++++.+|..|.||||+|
T Consensus       277 ~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~gad~n~~~~~g~t~L~~A  351 (437)
T 1n11_A          277 SGLTPLHLVAQEGHVPVADVLIK----HGVMVDATTRMGYTPLHVASHYGN-IKLVKFLLQHQADVNAKTKLGYSPLHQA  351 (437)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCSSCCCHHHHHHHSSC-SHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh----CCccCCCCCCCCCCHHHHHHHcCc-HHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence            77788888887777777777777    677888888888888888888885 7788888888888888888888888888


Q ss_pred             hhCCCchHHHHHHHHHHcCCCCCC
Q 042924          170 NYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       170 ~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      ....   ..+++++|.+.|.++..
T Consensus       352 ~~~g---~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          352 AQQG---HTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             HHTT---CHHHHHHHHHTTCCSCC
T ss_pred             HHCC---hHHHHHHHHHCcCCCCC
Confidence            8665   45788888888777654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=4.3e-28  Score=230.41  Aligned_cols=171  Identities=23%  Similarity=0.238  Sum_probs=155.7

Q ss_pred             HHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccc
Q 042924            5 SKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECY   84 (355)
Q Consensus         5 ~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   84 (355)
                      .+.|.+.+..++.+|..|.||||+|+..|+.+++++|++++++. +..+. .|.||||+|+..|+.+++++|++.+.++ 
T Consensus       228 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-  304 (437)
T 1n11_A          228 ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMV-  304 (437)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCCT-
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCccC-
Confidence            34444566678999999999999999999999999999999887 77887 9999999999999999999999999988 


Q ss_pred             cccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCc
Q 042924           85 ELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVS  164 (355)
Q Consensus        85 ~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~T  164 (355)
                      +.+|..|+||||+|+.+|+.+++++|++    .|+++|.+|..|+||||+|+..|+ .+++++|+++|++++.+|.+|+|
T Consensus       305 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~gad~n~~~~~g~t~L~~A~~~g~-~~iv~~Ll~~ga~~~~~~~~g~t  379 (437)
T 1n11_A          305 DATTRMGYTPLHVASHYGNIKLVKFLLQ----HQADVNAKTKLGYSPLHQAAQQGH-TDIVTLLLKNGASPNEVSSDGTT  379 (437)
T ss_dssp             TCCCSSCCCHHHHHHHSSCSHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTCCSCCCCSSSCC
T ss_pred             CCCCCCCCCHHHHHHHcCcHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHCCh-HHHHHHHHHCcCCCCCCCCCCCC
Confidence            8889999999999999999999999999    788999999999999999999996 99999999999999999999999


Q ss_pred             HHHHHhhCCCchHHHHHHHHHH
Q 042924          165 VRHIFNYGYPELKEEIQKLSKD  186 (355)
Q Consensus       165 pl~~a~~~~~~~~~~i~~~l~~  186 (355)
                      |+++|....   ...+.++|+.
T Consensus       380 ~l~~A~~~g---~~~~~~~l~~  398 (437)
T 1n11_A          380 PLAIAKRLG---YISVTDVLKV  398 (437)
T ss_dssp             HHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHcC---cHHHHHHHHh
Confidence            999999665   3456666655

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=2.9e-28  Score=227.20  Aligned_cols=175  Identities=18%  Similarity=0.138  Sum_probs=140.1

Q ss_pred             HHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhC---Cccc
Q 042924            8 LEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKN---PECY   84 (355)
Q Consensus         8 L~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~---~~~~   84 (355)
                      |...+.++|.+|.+|.||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|++.+   .++ 
T Consensus       152 ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-  228 (373)
T 2fo1_E          152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDI-  228 (373)
T ss_dssp             HHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-
T ss_pred             HHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCC-CCCCHHHHHHHCCCHHHHHHHHhcCccccCh-
Confidence            34667778999999999999999999999999999998887 77776 8889999999999999999988876   454 


Q ss_pred             cccccCCchHHHHHHhcC---ChhHHHHHHhcChhhhhhhcc--------CCCCCCcHHHHHHhcCCchHHHHHHhccC-
Q 042924           85 ELVDNRGWNFLHYAVVSF---RVEKLTNLLENNPLARSLINE--------GDAKGNTPLHVLAAIRPNEFDVDLVRKTQ-  152 (355)
Q Consensus        85 ~~~d~~g~t~Lh~A~~~~---~~~~~~~Ll~~~~~~~~~~n~--------~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g-  152 (355)
                      +..|.+|+||||+|+..+   +.++++.|++    .|.+++.        +|.+|+||||+|+..|+ .+++++|++.+ 
T Consensus       229 ~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~----~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~v~~Ll~~~~  303 (373)
T 2fo1_E          229 EELDRNGMTALMIVAHNEGRDQVASAKLLVE----KGAKVDYDGAARKDSEKYKGRTALHYAAQVSN-MPIVKYLVGEKG  303 (373)
T ss_dssp             SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHH----HTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC-HHHHHHHHHHSC
T ss_pred             hhcCCCCCCHHHHHHHhCCcchHHHHHHHHH----CCCCcccccccccCcccccCCCHHHHHHHhCC-HHHHHHHHHhcC
Confidence            667888888888888877   7788888888    5555554        66788888888888885 77777777665 


Q ss_pred             cccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          153 ANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       153 a~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      ++++.+|.+|.||||+|+...   ..+++++|.+.|.++..
T Consensus       304 ~~~n~~d~~g~TpL~~A~~~g---~~~iv~~Ll~~gad~~~  341 (373)
T 2fo1_E          304 SNKDKQDEDGKTPIMLAAQEG---RIEVVMYLIQQGASVEA  341 (373)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHT---CHHHHHHHHHTTCCSSC
T ss_pred             CCccCcCCCCCCHHHHHHHcC---CHHHHHHHHHcCCCccC
Confidence            888888888888888888654   45677788777766543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=8.7e-28  Score=208.95  Aligned_cols=182  Identities=17%  Similarity=0.179  Sum_probs=161.6

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|++ .+.+++.+|.+|.||||+|+..|+.+++++|++.+.+.....+. .|.||||+|+..|+.+++++|++.++
T Consensus        23 ~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~t~L~~A~~~~~~~~v~~Ll~~g~  100 (240)
T 3eu9_A           23 ERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD-LNSTPLHWATRQGHLSMVVQLMKYGA  100 (240)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT-TTBCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCC-cCCChhHHHHHcCCHHHHHHHHHcCC
Confidence            35566665 55668999999999999999999999999999999988555554 79999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccC-
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNK-  160 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~-  160 (355)
                      ++ +.+|..|+||||+|+..++.++++.|++    .|.+++.+|.+|+||||+|+..++...++++|++.|++++..+. 
T Consensus       101 ~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~  175 (240)
T 3eu9_A          101 DP-SLIDGEGCSCIHLAAQFGHTSIVAYLIA----KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY  175 (240)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTT
T ss_pred             CC-cccCCCCCCHHHHHHHcCHHHHHHHHHh----cCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhcc
Confidence            88 7889999999999999999999999999    67899999999999999999888768899999999999999997 


Q ss_pred             CCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          161 QIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       161 ~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      .|.||||+|+...   ..+++++|.+.|.++..
T Consensus       176 ~g~t~L~~A~~~~---~~~~v~~Ll~~g~~~~~  205 (240)
T 3eu9_A          176 HKNTALHWAVLAG---NTTVISLLLEAGANVDA  205 (240)
T ss_dssp             TCCCHHHHHHHHT---CHHHHHHHHHHTCCTTC
T ss_pred             CCCcHHHHHHHcC---CHHHHHHHHHcCCCCCC
Confidence            9999999999665   45788888888877653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=6e-28  Score=209.99  Aligned_cols=179  Identities=21%  Similarity=0.238  Sum_probs=156.9

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|++..+......+..|.||||+|+..|+.++++.|++.+.++ +.++. .|.||||+|+..|+.+++++|++.++
T Consensus        56 ~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~  133 (240)
T 3eu9_A           56 DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDG-EGCSCIHLAAQFGHTSIVAYLIAKGQ  133 (240)
T ss_dssp             HHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCC-CCCCHHHHHHHcCHHHHHHHHHhcCC
Confidence            45677777666655566677999999999999999999999999887 77776 89999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCC-hhHHHHHHhcChhhhhhhccCCC-CCCcHHHHHHhcCCchHHHHHHhccCccccccc
Q 042924           82 ECYELVDNRGWNFLHYAVVSFR-VEKLTNLLENNPLARSLINEGDA-KGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVN  159 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~-~~~~~~Ll~~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n  159 (355)
                      ++ +.+|..|+||||+|+..++ .++++.|++    .+.+++.++. .|+||||+|+..++ .+++++|+++|++++.+|
T Consensus       134 ~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~----~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~  207 (240)
T 3eu9_A          134 DV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLT----FNVSVNLGDKYHKNTALHWAVLAGN-TTVISLLLEAGANVDAQN  207 (240)
T ss_dssp             CT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHH----TTCCTTCCCTTTCCCHHHHHHHHTC-HHHHHHHHHHTCCTTCBC
T ss_pred             Cc-cccCCCCCcHHHHHHHhCChHHHHHHHHh----cCCCcchhhccCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCCcC
Confidence            88 8889999999999997766 788999988    7789999997 99999999999996 899999999999999999


Q ss_pred             CCCCcHHHHHhhCCCchHHHHHHHHHHcCCCC
Q 042924          160 KQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       160 ~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~  191 (355)
                      .+|+||+++|....   ..+++++|.+.+...
T Consensus       208 ~~g~t~l~~A~~~~---~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          208 IKGESALDLAKQRK---NVWMINHLQEARQAK  236 (240)
T ss_dssp             TTSCBHHHHHHHTT---CHHHHHHHHHHC---
T ss_pred             CCCCCHHHHHHHcC---cHHHHHHHHHhhhcc
Confidence            99999999999765   567888888765443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=1.5e-28  Score=220.74  Aligned_cols=177  Identities=18%  Similarity=0.066  Sum_probs=155.6

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|++ .+.+++.+  +|+||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|++.++
T Consensus        45 ~~v~~Ll~-~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga  119 (285)
T 3kea_A           45 RLVCTLLN-AGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDD-KGNTALYYAVDSGNMQTVKLFVKKNW  119 (285)
T ss_dssp             HHHHHHHH-TTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCG
T ss_pred             HHHHHHHh-CCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence            34555555 46667777  4999999999999999999999999987 77887 99999999999999999999999999


Q ss_pred             ccccccccCC-chHHHHHHhcCChhHHHHHHhcChhhhhhhccCCC-CCCcHHHHHHhcCCchHHHHHHhccCccccccc
Q 042924           82 ECYELVDNRG-WNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDA-KGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVN  159 (355)
Q Consensus        82 ~~~~~~d~~g-~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~-~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n  159 (355)
                      ++ +.+|..| .||||+|+..|+.+++++|++    .|...  .|. +|+||||+|+..|+ .+++++|+++|++++.+|
T Consensus       120 ~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~----~g~~~--~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~gad~n~~~  191 (285)
T 3kea_A          120 RL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLS----EIPST--FDLAILLSCIHITIKNGH-VDMMILLLDYMTSTNTNN  191 (285)
T ss_dssp             GG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHT----TSCTT--CCCSTHHHHHHHHHHTTC-HHHHHHHHHHHHHTCTTC
T ss_pred             CC-CccCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCcc--ccccCCccHHHHHHHcCh-HHHHHHHHHcCCCCCccc
Confidence            98 8889999 899999999999999999999    44443  333 89999999999996 999999999999999999


Q ss_pred             CCCCcH-HHHHhhCCCchHHHHHHHHHHcCCCCCCC
Q 042924          160 KQIVSV-RHIFNYGYPELKEEIQKLSKDVGRGQYSD  194 (355)
Q Consensus       160 ~~g~Tp-l~~a~~~~~~~~~~i~~~l~~~~~~~~~~  194 (355)
                      ..|.|| +|+|....   ..+++++|.+.|.++...
T Consensus       192 ~~g~t~~L~~A~~~~---~~~~v~~Ll~~gad~~~~  224 (285)
T 3kea_A          192 SLLFIPDIKLAIDNK---DIEMLQALFKYDINIYSA  224 (285)
T ss_dssp             CCBCCTTHHHHHHHT---CHHHHHHHTTSCBCSTTT
T ss_pred             CCCCChHHHHHHHcC---CHHHHHHHHHcCCCCCCC
Confidence            999998 99999765   568999999998887654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=8.6e-29  Score=215.73  Aligned_cols=172  Identities=19%  Similarity=0.140  Sum_probs=146.0

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHhhccCCC---cccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCc
Q 042924           16 KETDQYGWTPIHYAAYYGNYGTVNLLLETDQS---ASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGW   92 (355)
Q Consensus        16 ~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~---~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~   92 (355)
                      +.+|++|+||||+|+..|+.++++.|++.+..   ..+.++. .|.||||+|+..|+.+++++|++.++++ +.+|..|+
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~   79 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGN   79 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCC
Confidence            46789999999999999999999999997763   2377776 8999999999999999999999999988 88899999


Q ss_pred             hHHHHHHhcCChhHHHHHHhcChh--hhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccC-CCCcHHHHH
Q 042924           93 NFLHYAVVSFRVEKLTNLLENNPL--ARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNK-QIVSVRHIF  169 (355)
Q Consensus        93 t~Lh~A~~~~~~~~~~~Ll~~~~~--~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~-~g~Tpl~~a  169 (355)
                      ||||+|+..|+.++++.|++....  ....++..|..|+||||+|+..|+ .+++++|+++|++++.++. .|.||||+|
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A  158 (236)
T 1ikn_D           80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLA  158 (236)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTC-HHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence            999999999999999999995421  123478899999999999999996 8999999999999999998 999999999


Q ss_pred             hhCCCchHHHHHHHHHHcCCCCCC
Q 042924          170 NYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       170 ~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      +...   ..+++++|.+.|.++..
T Consensus       159 ~~~~---~~~~v~~Ll~~ga~~~~  179 (236)
T 1ikn_D          159 VDLQ---NPDLVSLLLKCGADVNR  179 (236)
T ss_dssp             HHTT---CHHHHHHHHTTTCCSCC
T ss_pred             HHcC---CHHHHHHHHHcCCCCCc
Confidence            9765   56889999988876653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.95  E-value=8.9e-28  Score=220.77  Aligned_cols=170  Identities=22%  Similarity=0.256  Sum_probs=140.0

Q ss_pred             HHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc
Q 042924            3 ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE   82 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~   82 (355)
                      +++.|+ +.+.+++.+|.+|+||||+|+..|+.+++++|+++|+++ +..+. .|.||||+|+..|+.+++++|++.+++
T Consensus        73 ~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~  149 (351)
T 3utm_A           73 IVQLLL-QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDL-WQFTPLHEAASKNRVEVCSLLLSHGAD  149 (351)
T ss_dssp             HHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHH-HcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            344444 456667888888888888888888888888888888776 66665 788888888888888877777776543


Q ss_pred             c-------------------------------------------------------------------------------
Q 042924           83 C-------------------------------------------------------------------------------   83 (355)
Q Consensus        83 ~-------------------------------------------------------------------------------   83 (355)
                      +                                                                               
T Consensus       150 ~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~  229 (351)
T 3utm_A          150 PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQV  229 (351)
T ss_dssp             TTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHH
T ss_pred             CccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHH
Confidence            2                                                                               


Q ss_pred             ----------ccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCc
Q 042924           84 ----------YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQA  153 (355)
Q Consensus        84 ----------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga  153 (355)
                                .+.+|.+|+||||+|+++|+.++++.|++    .|+++|.+|..|+||||+|+..|+ .+++++|+++|+
T Consensus       230 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~n~~d~~g~t~L~~A~~~~~-~~~v~~Ll~~ga  304 (351)
T 3utm_A          230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK----HGAKMNALDSLGQTALHRAALAGH-LQTCRLLLSYGS  304 (351)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHHTTC
T ss_pred             HHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCc-HHHHHHHHHcCC
Confidence                      14467889999999999999999999999    789999999999999999999996 999999999999


Q ss_pred             ccccccCCCCcHHHHHhhCCCchHHHHHHHHHHc
Q 042924          154 NYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDV  187 (355)
Q Consensus       154 ~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~  187 (355)
                      +++.+|.+|+||+++|.       +.+.+++.+.
T Consensus       305 d~~~~~~~g~tal~~a~-------~~~~~~l~~~  331 (351)
T 3utm_A          305 DPSIISLQGFTAAQMGN-------EAVQQILSES  331 (351)
T ss_dssp             CTTCCCTTSCCHHHHSC-------HHHHHHHHHC
T ss_pred             CCCCcCCCCCChhhhhh-------HHHHHHHHhc
Confidence            99999999999999983       3566666663

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=2.6e-27  Score=211.11  Aligned_cols=183  Identities=22%  Similarity=0.211  Sum_probs=159.9

Q ss_pred             hHHHHHHHhcccccccc-CCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhC
Q 042924            2 AALSKLLEIKKNLIKET-DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKN   80 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~-d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~   80 (355)
                      +.++.|++.+++ ++.. +..|+||||+|+..|+.+++++|+++|.++ +.++. .|.||||+|+..|+.+++++|++.+
T Consensus        19 ~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g   95 (285)
T 1wdy_A           19 DLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKK-NGATPFLLAAIAGSVKLLKLFLSKG   95 (285)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCC-CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            456777766554 5666 889999999999999999999999999987 77777 9999999999999999999999999


Q ss_pred             CccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccC----------CCCCCcHHHHHHhcCCchHHHHHHhc
Q 042924           81 PECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEG----------DAKGNTPLHVLAAIRPNEFDVDLVRK  150 (355)
Q Consensus        81 ~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~----------d~~G~T~Lh~A~~~~~~~~~~~lL~~  150 (355)
                      +++ +..|..|+||||+|+..|+.++++.|++    .|.+++.+          |..|.||||+|+..|+ .+++++|++
T Consensus        96 ~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~  169 (285)
T 1wdy_A           96 ADV-NECDFYGFTAFMEAAVYGKVKALKFLYK----RGANVNLRRKTKEDQERLRKGGATALMDAAEKGH-VEVLKILLD  169 (285)
T ss_dssp             CCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC-HHHHHHHHH
T ss_pred             CCC-CccCcccCCHHHHHHHhCCHHHHHHHHH----hCCCcccccccHHHHHhhccCCCcHHHHHHHcCC-HHHHHHHHH
Confidence            998 8889999999999999999999999999    56677766          8889999999999996 888888887


Q ss_pred             c-CcccccccCCCCcHHHHHhhCCC-chHHHHHHHHHHcCCCCCC
Q 042924          151 T-QANYDAVNKQIVSVRHIFNYGYP-ELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       151 ~-ga~~~~~n~~g~Tpl~~a~~~~~-~~~~~i~~~l~~~~~~~~~  193 (355)
                      . |++++.+|..|.||++.|..... +...+++++|.+.|.++..
T Consensus       170 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~  214 (285)
T 1wdy_A          170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV  214 (285)
T ss_dssp             TSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC
T ss_pred             hcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCC
Confidence            6 99999999999999999985432 2247889999998876643

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=4.5e-28  Score=197.38  Aligned_cols=153  Identities=16%  Similarity=0.155  Sum_probs=138.4

Q ss_pred             CChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhc
Q 042924           22 GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVS  101 (355)
Q Consensus        22 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  101 (355)
                      |.||||.|+..|+.++++.|++......+..+. .|.||||+ +..|+.+++++|++.++++ +.+|..|+||||+|+.+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT-TSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCC-CCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence            569999999999999999999983323377777 89999999 9999999999999999998 88999999999999999


Q ss_pred             CChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHH
Q 042924          102 FRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQ  181 (355)
Q Consensus       102 ~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~  181 (355)
                      |+.++++.|++    .|.+++.+|.+|+||||+|+..|+ .+++++|++. ++++.+|.+|.||+++|....   ..+++
T Consensus        79 ~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~---~~~~v  149 (156)
T 1bd8_A           79 GFLDTLKVLVE----HGADVNVPDGTGALPIHLAVQEGH-TAVVSFLAAE-SDLHRRDARGLTPLELALQRG---AQDLV  149 (156)
T ss_dssp             TCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHHTC-HHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSC---CHHHH
T ss_pred             CcHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHhCh-HHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcC---cHHHH
Confidence            99999999999    788999999999999999999996 8999999999 999999999999999999765   45667


Q ss_pred             HHHHH
Q 042924          182 KLSKD  186 (355)
Q Consensus       182 ~~l~~  186 (355)
                      ++|.+
T Consensus       150 ~~Ll~  154 (156)
T 1bd8_A          150 DILQG  154 (156)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            76654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=2.1e-28  Score=199.73  Aligned_cols=146  Identities=17%  Similarity=0.137  Sum_probs=118.4

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCch-
Q 042924           15 IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWN-   93 (355)
Q Consensus        15 ~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-   93 (355)
                      .+..++.|.||||+|+..|+.++++.|+++|.++ +.++. .|+||||+|+ .|+.+++++|++.+.++ +.+|..|+| 
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~tt   80 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNS-YGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTR   80 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCS-SSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCC
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcH
Confidence            4677899999999999999999999999999887 78887 9999999985 99999999999999988 889999999 


Q ss_pred             HHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHH
Q 042924           94 FLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIF  169 (355)
Q Consensus        94 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a  169 (355)
                      |||+|+..|+.+++++|++    .|++++.+|.+|+||||+|+..++ .+++++|+++|++++.+|..|.||.+-+
T Consensus        81 pL~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~tpl~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLHR----AGARLDVRDAWGRLPVDLAEELGH-RDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTCCCHHHHHHHHTC-HHHHHHHSSCC-----------------
T ss_pred             HHHHHHHCCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHhCH-HHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999999    789999999999999999999996 8999999999999999999999998743

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.95  E-value=7.1e-28  Score=224.54  Aligned_cols=177  Identities=18%  Similarity=0.173  Sum_probs=156.1

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccC---CCcccccccCCCchHHHHHHhcC---CHHHHHHHh
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETD---QSASNIADKDRKMTALHLAAGKG---DARIVEAII   77 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~---~~~~~~~~~~~g~tpLh~Aa~~g---~~~~v~~Ll   77 (355)
                      +.++|.+.+.+++.+|.+|.||||+|+..|+.+++++|++.+   .+. +..+. .|.||||+|+..|   +.+++++|+
T Consensus       181 iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~-~g~t~L~~A~~~~~~~~~~~v~~Ll  258 (373)
T 2fo1_E          181 LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDR-NGMTALMIVAHNEGRDQVASAKLLV  258 (373)
T ss_dssp             HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCT-TSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred             HHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCC-CCCCHHHHHHHhCCcchHHHHHHHH
Confidence            444555567789999999999999999999999999999987   455 77777 9999999999998   899999999


Q ss_pred             hhCCcccc-------ccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhc
Q 042924           78 SKNPECYE-------LVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRK  150 (355)
Q Consensus        78 ~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~  150 (355)
                      +.++++..       ..|..|+||||+|+.+|+.+++++|++.   .+.++|.+|.+|+||||+|+..|+ .+++++|++
T Consensus       259 ~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~---~~~~~n~~d~~g~TpL~~A~~~g~-~~iv~~Ll~  334 (373)
T 2fo1_E          259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE---KGSNKDKQDEDGKTPIMLAAQEGR-IEVVMYLIQ  334 (373)
T ss_dssp             HHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH---SCCCTTCCCTTCCCHHHHHHHHTC-HHHHHHHHH
T ss_pred             HCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHh---cCCCccCcCCCCCCHHHHHHHcCC-HHHHHHHHH
Confidence            99998832       2577999999999999999999999983   238999999999999999999996 999999999


Q ss_pred             cCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCC
Q 042924          151 TQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGR  189 (355)
Q Consensus       151 ~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~  189 (355)
                      +|++++.+|.+|+||+++|....   ..+++++|.+.+.
T Consensus       335 ~gad~~~~d~~g~t~l~~A~~~g---~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          335 QGASVEAVDATDHTARQLAQANN---HHNIVDIFDRCRP  370 (373)
T ss_dssp             TTCCSSCCCSSSCCHHHHHHHTT---CHHHHHHHHTTC-
T ss_pred             cCCCccCCCCCCCCHHHHHHHcC---CHHHHHHHHhcCc
Confidence            99999999999999999999765   5688888887554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=4.4e-28  Score=202.31  Aligned_cols=153  Identities=23%  Similarity=0.330  Sum_probs=143.8

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.+++..+.+++.+|..|+||||+|+..|+.+++++|++.+.++ +.++. .|.||||+|+..|+.+++++|++.++
T Consensus        19 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~   96 (179)
T 3f6q_A           19 VAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNR-GDDTPLHLAASHGHRDIVQKLLQYKA   96 (179)
T ss_dssp             HHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            56888888889999999999999999999999999999999999987 77887 99999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCC
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ  161 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~  161 (355)
                      ++ +.+|..|+||||+|+..++.++++.|++    .|++++.+|.+|+||||+|+..++ ..++++|++.|++++..+.+
T Consensus        97 ~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~tpl~~A~~~~~-~~~~~~L~~~g~~~~~~~~~  170 (179)
T 3f6q_A           97 DI-NAVNEHGNVPLHYACFWGQDQVAEDLVA----NGALVSICNKYGEMPVDKAKAPLR-ELLRERAEKMGQNLNRIPYK  170 (179)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCSSBCCTTSCCGGGGSCHHHH-HHHHHHHHHTTCCCSCBCCC
T ss_pred             CC-CccCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCcchhccCCCCcHHHHHHHHH-HHHHHHHHHhhcCcccCCcc
Confidence            98 8899999999999999999999999999    788999999999999999999995 89999999999999987765


Q ss_pred             C
Q 042924          162 I  162 (355)
Q Consensus       162 g  162 (355)
                      +
T Consensus       171 ~  171 (179)
T 3f6q_A          171 D  171 (179)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=3.6e-27  Score=200.02  Aligned_cols=169  Identities=21%  Similarity=0.145  Sum_probs=151.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHH
Q 042924           19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYA   98 (355)
Q Consensus        19 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   98 (355)
                      +..+.||||.|+..|+.+.++.|++.++...+..+. .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A   79 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYA   79 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            467999999999999999999999988844488887 9999999999999999999999999998 88999999999999


Q ss_pred             HhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccC-cccccccCCCCcHHHHHhhCCC--c
Q 042924           99 VVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQ-ANYDAVNKQIVSVRHIFNYGYP--E  175 (355)
Q Consensus        99 ~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g-a~~~~~n~~g~Tpl~~a~~~~~--~  175 (355)
                      +..|+.++++.|++.   .+.+++.+|.+|+||||+|+..++ .+++++|++.| ++++.+|.+|.||+|+|+....  .
T Consensus        80 ~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~  155 (201)
T 3hra_A           80 GAQGRTEILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGH-IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ  155 (201)
T ss_dssp             HHTTCHHHHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTC-HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSH
T ss_pred             HHcCCHHHHHHHHhc---cCcccccccCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchh
Confidence            999999999999964   456899999999999999999996 89999999998 9999999999999999995543  2


Q ss_pred             hHHHHHHHHHHcCCCCCC
Q 042924          176 LKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       176 ~~~~i~~~l~~~~~~~~~  193 (355)
                      ...+++++|.+.|.++..
T Consensus       156 ~~~~~v~~Ll~~ga~~~~  173 (201)
T 3hra_A          156 LYQDIVKLLMENGADQSI  173 (201)
T ss_dssp             HHHHHHHHHHHTTCCTTC
T ss_pred             hHHHHHHHHHHCCCCCCc
Confidence            237899999998877654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=2.6e-27  Score=213.42  Aligned_cols=164  Identities=21%  Similarity=0.177  Sum_probs=142.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHH
Q 042924           19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYA   98 (355)
Q Consensus        19 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   98 (355)
                      +.+|.||||.||..|+.++++.|++.|.++ +..+. .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A  113 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANV-DGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAA  113 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            346789999999999999999999999887 77887 9999999999999999999999999998 88899999999999


Q ss_pred             HhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHH-HHhccCccccc--------------------
Q 042924           99 VVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVD-LVRKTQANYDA--------------------  157 (355)
Q Consensus        99 ~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~-lL~~~ga~~~~--------------------  157 (355)
                      +..|+.+++++|++    .|.+++.+|.+|+||||+|+..++ ..+++ ++...+++++.                    
T Consensus       114 ~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (299)
T 1s70_B          114 ASCGYLDIAEYLIS----QGAHVGAVNSEGDTPLDIAEEEAM-EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG  188 (299)
T ss_dssp             HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHCCSHHH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHh----CCCCCCCcCCCCCCHHHHHHhcch-HHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhcc
Confidence            99999999999999    788999999999999999999885 55554 44455555443                    


Q ss_pred             ------ccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          158 ------VNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       158 ------~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                            .+..|.||||+|+...   ..+++++|.+.|.++..
T Consensus       189 ~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~d~~~  227 (299)
T 1s70_B          189 HINDVRHAKSGGTALHVAAAKG---YTEVLKLLIQARYDVNI  227 (299)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHT---CHHHHHHHHTTTCCTTC
T ss_pred             CcchhhhcCCCCCHHHHHHHCC---cHHHHHHHHHcCCCCCC
Confidence                  5678999999999665   45788888887766543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.95  E-value=7.9e-28  Score=223.19  Aligned_cols=170  Identities=25%  Similarity=0.176  Sum_probs=112.7

Q ss_pred             cccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcccc------
Q 042924           12 KNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYE------   85 (355)
Q Consensus        12 ~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~------   85 (355)
                      ..+.+..|.+|+||||+||..|+.+++++|++.|.++ +.++. .|.||||+|+..|+.+++++|++.+++...      
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~   87 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNR-FGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKP   87 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCH
Confidence            3456788999999999999999999999999999887 88887 999999999999999999999999885521      


Q ss_pred             ---------------------------------------------ccccCCchHHHHHHhcC--ChhHHHHHHhcChhhh
Q 042924           86 ---------------------------------------------LVDNRGWNFLHYAVVSF--RVEKLTNLLENNPLAR  118 (355)
Q Consensus        86 ---------------------------------------------~~d~~g~t~Lh~A~~~~--~~~~~~~Ll~~~~~~~  118 (355)
                                                                   ..|..|+||||+|+..|  +.+++++|++    .|
T Consensus        88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~----~g  163 (364)
T 3ljn_A           88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ----LG  163 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH----HT
T ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH----cC
Confidence                                                         03444555555555555  5555555555    44


Q ss_pred             hhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcc-----cccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCC
Q 042924          119 SLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQAN-----YDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       119 ~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~-----~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~  191 (355)
                      ++++.+|.+|+||||+|+..|+ .+++++|++.|++     ++.+|.+|.||||+|+...   ..+++++|.+.|.++
T Consensus       164 a~~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~gad~  237 (364)
T 3ljn_A          164 ASPTAKDKADETPLMRAMEFRN-REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN---WEDVAMRFVEMGIDV  237 (364)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTT---CHHHHHHHHTTTCCT
T ss_pred             CCCcccCCCCCCHHHHHHHcCC-HHHHHHHHhcccccccccccccCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCC
Confidence            5555555555555555555553 5555555555555     5555555555555555433   334555555555444

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=7e-28  Score=191.95  Aligned_cols=134  Identities=18%  Similarity=0.118  Sum_probs=125.8

Q ss_pred             cccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccC-
Q 042924           12 KNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNR-   90 (355)
Q Consensus        12 ~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-   90 (355)
                      +.+++.+|..|.||||+|+..|+.+++++|++++.++ +.++. .|+||||+|+. |+.+++++|++.++++ +.+|.. 
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~   77 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNR-FGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPAT   77 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTT
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCC-CCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCC
Confidence            4568999999999999999999999999999999887 77887 99999999999 9999999999999998 888999 


Q ss_pred             CchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcc
Q 042924           91 GWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQAN  154 (355)
Q Consensus        91 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~  154 (355)
                      |+||||+|+..|+.++++.|++    .|++++.+|.+|+||||+|+..++ .+++++|+++|+|
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~tpl~~A~~~~~-~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHR----AGARLDVCDAWGRLPVDLAEEQGH-RDIARYLHAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHH----TCCCCCCCSSSSSCHHHHHHHHTC-HHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCC-HHHHHHHHHcCCC
Confidence            9999999999999999999999    788999999999999999999996 9999999999886

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=5.5e-27  Score=192.02  Aligned_cols=143  Identities=19%  Similarity=0.262  Sum_probs=129.1

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|++ .+..++.+|..|+||||+|+. |+.+++++|++++.++ +.++. .|.||||+|+..|+.+++++|++.++
T Consensus        19 ~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~   94 (162)
T 1ihb_A           19 EQLTSLLQ-NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDR-TGFAVIHDAARAGFLDTLQTLLEFQA   94 (162)
T ss_dssp             HHHHHHTT-SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHh-CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            34555554 667789999999999999999 9999999999999887 77887 99999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhh-hccCCCCCCcHHHHHHhcCCchHHHHHHhccCcc
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSL-INEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQAN  154 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~-~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~  154 (355)
                      ++ +.+|.+|+||||+|++.|+.+++++|++    .|.+ ++.+|.+|+||||+|+..++ .+++++|+++|+|
T Consensus        95 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~l~~A~~~~~-~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           95 DV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK----HTASNVGHRNHKGDTACDLARLYGR-NEVVSLMQANGAG  162 (162)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----HSCCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTC--
T ss_pred             CC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH----ccCCCCCCcCCCCCcHHHHHHHcCC-HHHHHHHHHhCCC
Confidence            88 8899999999999999999999999999    5665 69999999999999999996 9999999999986

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=2.1e-26  Score=190.32  Aligned_cols=142  Identities=27%  Similarity=0.386  Sum_probs=129.6

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|++ .+.+++.+|.+|.||||+|+..|+.+++++|++++.+. +..+. .|.||||+|+..|+.+++++|++.++
T Consensus        28 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~  104 (169)
T 2y1l_E           28 DEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDH-AGMTPLRLAALFGHLEIVEVLLKNGA  104 (169)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCC-CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            34555555 56778999999999999999999999999999999887 77787 89999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccC
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQ  152 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g  152 (355)
                      ++ +.+|.+|+||||+|+..++.+++++|++    .|++++.+|.+|+||||+|+..++ .+++++|++.|
T Consensus       105 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~-~~~~~~L~~~G  169 (169)
T 2y1l_E          105 DV-NANDMEGHTPLHLAAMFGHLEIVEVLLK----NGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN  169 (169)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHTC-
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHhCC-HHHHHHHHHcC
Confidence            98 8889999999999999999999999999    788999999999999999999996 89999998875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=1e-27  Score=209.63  Aligned_cols=161  Identities=16%  Similarity=0.100  Sum_probs=110.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHH
Q 042924           19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYA   98 (355)
Q Consensus        19 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   98 (355)
                      +..|.||||.|++.|+.+.++.|+++|.++ +.. . .|.||||.|+..|+.++++.|++.++++ +.+|..|+||||+|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~~-~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-KFN-P-LPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNA   77 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc-ccC-c-hhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence            467999999999999999999999999887 443 3 7899999999999999999999999987 88999999999999


Q ss_pred             HhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCC-cHHHHHhhCCCchH
Q 042924           99 VVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIV-SVRHIFNYGYPELK  177 (355)
Q Consensus        99 ~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~-Tpl~~a~~~~~~~~  177 (355)
                      +.+|+.+++++|++    .|+++|.+|.+|+||||+|+..|+ .+++++|+++|++++.+|..|. ||+|+|...... .
T Consensus        78 ~~~g~~~~v~~Ll~----~ga~~~~~d~~g~tpL~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g-~  151 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQ----FGVNVNAADSDGWTPLHCAASCNN-VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG-Y  151 (239)
T ss_dssp             HHHTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTT-C
T ss_pred             HHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhc-c
Confidence            99999999999999    789999999999999999999996 9999999999999999998887 999999421111 2


Q ss_pred             HHHHHHHHHcCC
Q 042924          178 EEIQKLSKDVGR  189 (355)
Q Consensus       178 ~~i~~~l~~~~~  189 (355)
                      .+++++|.+.+.
T Consensus       152 ~~~~~~Ll~~~a  163 (239)
T 1ycs_B          152 TQCSQFLYGVQE  163 (239)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhh
Confidence            345666665443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=5e-27  Score=193.07  Aligned_cols=143  Identities=24%  Similarity=0.305  Sum_probs=131.8

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|++..+...+..|..|.||||+|+..|+.+++++|++++.++ +.++. .|.||||+|+..|+.+++++|++.++
T Consensus        22 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~   99 (165)
T 3twr_A           22 ETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDK-GGLVPLHNACSYGHYEVAELLVKHGA   99 (165)
T ss_dssp             HHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCC-CCCCHHHHHHHcCcHHHHHHHHhCCC
Confidence            56788888888888999999999999999999999999999999987 78887 99999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCc
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQA  153 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga  153 (355)
                      ++ +.+|..|+||||+|+.+++.++++.|++    .|++++.+|.+|+||||+|+. ++ .+++++|+++|+
T Consensus       100 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~a~~-~~-~~i~~~L~~~gA  164 (165)
T 3twr_A          100 VV-NVADLWKFTPLHEAAAKGKYEICKLLLQ----HGADPTKKNRDGNTPLDLVKD-GD-TDIQDLLRGDAA  164 (165)
T ss_dssp             CT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCTGGGSCT-TC-HHHHHHHHTC--
T ss_pred             CC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCChhHhHhc-CC-hHHHHHHhhccc
Confidence            98 8889999999999999999999999999    788999999999999999877 64 799999998876

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=3.7e-27  Score=207.91  Aligned_cols=164  Identities=13%  Similarity=0.051  Sum_probs=139.0

Q ss_pred             CCChHHHHHHHcCCHH----HHHHhhccCCCcccc----cccCCCchHHHHHHhc---CCHHHHHHHhhhCCcccc----
Q 042924           21 YGWTPIHYAAYYGNYG----TVNLLLETDQSASNI----ADKDRKMTALHLAAGK---GDARIVEAIISKNPECYE----   85 (355)
Q Consensus        21 ~G~tpLh~Aa~~g~~~----~v~~Ll~~~~~~~~~----~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~----   85 (355)
                      .|+||||+|+..|+.+    ++++|++.+.++ +.    ++. .|+||||+|+..   |+.+++++|++.+++...    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~-~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGS-TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTT-TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCC-CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            4899999999999997    556677788887 55    676 999999999999   999999999999876521    


Q ss_pred             ------ccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCC-------------CCcHHHHHHhcCCchHHHH
Q 042924           86 ------LVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAK-------------GNTPLHVLAAIRPNEFDVD  146 (355)
Q Consensus        86 ------~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~-------------G~T~Lh~A~~~~~~~~~~~  146 (355)
                            ..|..|+||||+|+..|+.++++.|++    .|+++|.+|..             |+||||+|+..|+ .++++
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~-~~~v~  153 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE----NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ-WDVVT  153 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC-HHHHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcccccccccccccccccCCCCHHHHHHHcCC-HHHHH
Confidence                  234789999999999999999999999    78899999886             9999999999996 89999


Q ss_pred             HHhc---cCcccccccCCCCcHHHHHhhC-CCchH-----HHHHHHHHHcCCCC
Q 042924          147 LVRK---TQANYDAVNKQIVSVRHIFNYG-YPELK-----EEIQKLSKDVGRGQ  191 (355)
Q Consensus       147 lL~~---~ga~~~~~n~~g~Tpl~~a~~~-~~~~~-----~~i~~~l~~~~~~~  191 (355)
                      +|++   .|++++.+|.+|+||||+|+.. .....     .+++++|.+.|.++
T Consensus       154 ~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          154 YLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            9999   9999999999999999999962 22111     13788888766554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=2.1e-26  Score=189.67  Aligned_cols=146  Identities=25%  Similarity=0.301  Sum_probs=134.0

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|++. +..++.+|.+|.||||+|+..|+.+++++|++.+.++ +..+. .|.||||+|+..|+.+++++|++.++
T Consensus        17 ~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~   93 (167)
T 3v31_A           17 LYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGK-GRESALSLACSKGYTDIVKMLLDCGV   93 (167)
T ss_dssp             HHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCC-CCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence            456677766 4668999999999999999999999999999999887 77777 99999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccc
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYD  156 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~  156 (355)
                      ++ +.+|..|+||||+|+..++.++++.|++    .|.+++.+|.+|+||||+|+..|+ .+++++|++++.+..
T Consensus        94 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~-~~~~~~L~~~~~~~~  162 (167)
T 3v31_A           94 DV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE----SGADPTIETDSGYNSMDLAVALGY-RSVQQVIESHLLKLL  162 (167)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHHHHHHHC
T ss_pred             CC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCc-HHHHHHHHHHHHHHH
Confidence            98 8889999999999999999999999999    788999999999999999999996 999999998877654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=2.8e-26  Score=186.72  Aligned_cols=140  Identities=21%  Similarity=0.265  Sum_probs=129.6

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.+++..+.+++.+|..|+||||+ +..|+.++++.|+++|.++ +.++. .|.||||+|+..|+.+++++|++.++
T Consensus        16 ~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~   92 (156)
T 1bd8_A           16 QEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDT-SGTSPVHDAARTGFLDTLKVLVEHGA   92 (156)
T ss_dssp             HHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            567888888666889999999999999 9999999999999999987 88887 99999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhcc
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKT  151 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~  151 (355)
                      ++ +.+|..|+||||+|+.+|+.+++++|++    . .+++.+|.+|+||||+|+..|+ .+++++|+++
T Consensus        93 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~-~~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~  155 (156)
T 1bd8_A           93 DV-NVPDGTGALPIHLAVQEGHTAVVSFLAA----E-SDLHRRDARGLTPLELALQRGA-QDLVDILQGH  155 (156)
T ss_dssp             CS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT----T-SCTTCCCTTSCCHHHHHHHSCC-HHHHHHHHTT
T ss_pred             CC-CCcCCCCCcHHHHHHHhChHHHHHHHHh----c-cCCCCcCCCCCCHHHHHHHcCc-HHHHHHHHhh
Confidence            88 8889999999999999999999999998    5 7899999999999999999996 8899988764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=6.7e-26  Score=208.00  Aligned_cols=176  Identities=22%  Similarity=0.221  Sum_probs=147.6

Q ss_pred             HHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCccccccc---------CCCchHHHHHHhcCCHHHHHHHhh
Q 042924            8 LEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADK---------DRKMTALHLAAGKGDARIVEAIIS   78 (355)
Q Consensus         8 L~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~---------~~g~tpLh~Aa~~g~~~~v~~Ll~   78 (355)
                      +...+.+++.+|..|+||||+|+..|+.++++.|+++|+++ +....         ..|.||||+|+..|+.+++++|++
T Consensus       111 ~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~-~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~  189 (337)
T 4g8k_A          111 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD  189 (337)
T ss_dssp             HHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             hhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCc-chhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHh
Confidence            33445567888999999999999999999999999998876 32221         268999999999999999999997


Q ss_pred             h-CCccccccccCCchHHHHHHhcCC----hhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhc-cC
Q 042924           79 K-NPECYELVDNRGWNFLHYAVVSFR----VEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRK-TQ  152 (355)
Q Consensus        79 ~-~~~~~~~~d~~g~t~Lh~A~~~~~----~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~-~g  152 (355)
                      + +.++ +.+|..|+|++|.++..++    ..++++|++    .|+++|.+|.+|+||||+|+..|+ .++++.|++ .|
T Consensus       190 ~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~----~gad~n~~d~~g~t~L~~a~~~~~-~~~v~~Ll~~~~  263 (337)
T 4g8k_A          190 EMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLD----HGADVNVRGERGKTPLILAVEKKH-LGLVQRLLEQEH  263 (337)
T ss_dssp             HSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH----TTCCTTCCCGGGCCHHHHHHHTTC-HHHHHHHHTSTT
T ss_pred             ccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhhh-hHHHHHHHHhcC
Confidence            5 6676 8899999999998876554    346777887    789999999999999999999996 777776665 58


Q ss_pred             cccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          153 ANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       153 a~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      ++++.+|.+|+||||+|+...   ..+++++|.+.|+++..
T Consensus       264 ~~vn~~d~~G~TpL~~A~~~g---~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          264 IEINDTDSDGKTALLLAVELK---LKKIAELLCKRGASTDC  301 (337)
T ss_dssp             CCTTCBCTTSCBHHHHHHHTT---CHHHHHHHHTTSCSSTT
T ss_pred             CcccCcCCCCCCHHHHHHHcC---CHHHHHHHHHCCCCCCC
Confidence            999999999999999999766   56889999998887643

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=2e-27  Score=206.46  Aligned_cols=159  Identities=16%  Similarity=0.147  Sum_probs=135.5

Q ss_pred             HHHHHHhcccc--ccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            4 LSKLLEIKKNL--IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         4 v~~lL~~~~~~--~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      ++.||++..+.  .+..+.+|.||||+|+..|+.++++.|++.|+++ +.++. .|+||||+|+..|+.+++++|++.++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga   78 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNE-EGITALHNAICGANYSIVDFLITAGA   78 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            35566655432  3455677889999999999999999999999987 78887 99999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCC-CCCCcHHHHH--HhcCCchHHHHHHhccCcccccc
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGD-AKGNTPLHVL--AAIRPNEFDVDLVRKTQANYDAV  158 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A--~~~~~~~~~~~lL~~~ga~~~~~  158 (355)
                      ++ +.+|..|+||||+|+.+|+.+++++|++    .|++++.+| .+|+||||+|  +..++ .+++++|++.|++++.+
T Consensus        79 ~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~g~tpL~~A~a~~~~~-~~~v~~Ll~~ga~~~~~  152 (229)
T 2vge_A           79 NV-NSPDSHGWTPLHCAASCNDTVICMALVQ----HGAAIFATTLSDGATAFEKCDPYREGY-ADCATYLADVEQSMGLM  152 (229)
T ss_dssp             CT-TCCCTTCCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCSSTTCCTGGGCCTTSTTH-HHHHHHHHHHHHHTTTS
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCCHHHHHHHHhcCh-HHHHHHHHHcCCCcccc
Confidence            98 8899999999999999999999999999    788999997 6999999999  88884 89999999999999888


Q ss_pred             cCCCCcHHHHHh
Q 042924          159 NKQIVSVRHIFN  170 (355)
Q Consensus       159 n~~g~Tpl~~a~  170 (355)
                      |..|.||++.+.
T Consensus       153 ~~~~~~~l~~~~  164 (229)
T 2vge_A          153 NSGAVYALWDYS  164 (229)
T ss_dssp             GGGEEEESSCBC
T ss_pred             cCCchHHHHHHh
Confidence            888888887554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=9.6e-26  Score=183.12  Aligned_cols=137  Identities=24%  Similarity=0.314  Sum_probs=125.0

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|++.+.+ ++ .|..|.||||+|+..|+.+++++|++.+.++ +.++. .|.||||+|+..|+.+++++|++.++
T Consensus        16 ~~v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~   91 (153)
T 1awc_B           16 DEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTK-VDRTPLHMAASEGHANIVEVLLKHGA   91 (153)
T ss_dssp             HHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             HHHHHHHHcCCC-CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcChHHHHHHHHHcCC
Confidence            456777776654 44 6899999999999999999999999999887 77787 89999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHH
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLV  148 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL  148 (355)
                      ++ +.+|..|+||||+|+.+++.+++++|++    .|++++.+|.+|+||||+|+..|+ .+++++|
T Consensus        92 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~-~~i~~~L  152 (153)
T 1awc_B           92 DV-NAKDMLKMTALHWATEHNHQEVVELLIK----YGADVHTQSKFCKTAFDISIDNGN-EDLAEIL  152 (153)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHH
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCHHHHHHHcCC-HHHHHHh
Confidence            98 8889999999999999999999999999    788999999999999999999996 8888776

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.93  E-value=6.9e-26  Score=201.72  Aligned_cols=159  Identities=19%  Similarity=0.200  Sum_probs=126.3

Q ss_pred             hHHHHHHHhcccc------cc----ccCCCCChHHHHHHHcCCHHHHHHhhccCCCccccccc-------------CCCc
Q 042924            2 AALSKLLEIKKNL------IK----ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADK-------------DRKM   58 (355)
Q Consensus         2 ~~v~~lL~~~~~~------~~----~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-------------~~g~   58 (355)
                      ++++.|++.+.+.      ++    .+|.+|+||||+|+..|+.+++++|+++|+++ +.++.             ..|.
T Consensus        71 ~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~  149 (273)
T 2pnn_A           71 DTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGE  149 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCB
T ss_pred             HHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCC
Confidence            4566666664321      23    36779999999999999999999999999887 66653             1699


Q ss_pred             hHHHHHHhcCCHHHHHHHhh---hCCccccccccCCchHHHHHHhcCC---------hhHHHHHHhcChhhhhhhc----
Q 042924           59 TALHLAAGKGDARIVEAIIS---KNPECYELVDNRGWNFLHYAVVSFR---------VEKLTNLLENNPLARSLIN----  122 (355)
Q Consensus        59 tpLh~Aa~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~~~~Ll~~~~~~~~~~n----  122 (355)
                      ||||+|+..|+.+++++|++   .+.++ +.+|.+|+||||+|+..++         .++++.|++    .|+++|    
T Consensus       150 tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~----~ga~~n~~~~  224 (273)
T 2pnn_A          150 LPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI----LGAKLHPTLK  224 (273)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH----HHHHHCTTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH----hhhhcccccc
Confidence            99999999999999999999   88888 8899999999999999988         789999999    788886    


Q ss_pred             ---cCCCCCCcHHHHHHhcCCchHHHHHHhccCc-ccccccCCCCcHHH
Q 042924          123 ---EGDAKGNTPLHVLAAIRPNEFDVDLVRKTQA-NYDAVNKQIVSVRH  167 (355)
Q Consensus       123 ---~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga-~~~~~n~~g~Tpl~  167 (355)
                         .+|.+|+||||+|+..|+ .+++++|+++|+ |+......+.+|-+
T Consensus       225 ~~~~~d~~g~TpL~~A~~~g~-~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          225 LEEITNRKGLTPLALAASSGK-IGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTC-HHHHHHHHHHHTC--------------
T ss_pred             cccccCCCCCCHHHHHHHhCh-HHHHHHHHHCCCCCchhhhhhhhhccC
Confidence               589999999999999996 999999999999 88887777776643

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=5.5e-26  Score=191.63  Aligned_cols=142  Identities=20%  Similarity=0.151  Sum_probs=130.3

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|++. +.+++.+|.+|+||||+|+..|+.+++++|++.++++ +.++. .|.||||+|+..|+.+++++|++.++
T Consensus        49 ~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~  125 (192)
T 2rfm_A           49 NAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDF-SGKTPLMWSIIFGYSEMSYFLLEHGA  125 (192)
T ss_dssp             GGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence            355666665 5668999999999999999999999999999999887 77887 99999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccC
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQ  152 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g  152 (355)
                      ++ +.+|..|+||||+|+..|+.++++.|++    .|++++.+|.+|+||||+|+..|+ .+++++|++.|
T Consensus       126 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~~  190 (192)
T 2rfm_A          126 NV-NDRNLEGETPLIVASKYGRSEIVKKLLE----LGADISARDLTGLTAEASARIFGR-QEVIKIFTEVR  190 (192)
T ss_dssp             CS-SCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhCc-HHHHHHHHhcc
Confidence            98 8899999999999999999999999999    788999999999999999999996 89999998764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=2e-26  Score=193.53  Aligned_cols=154  Identities=14%  Similarity=0.023  Sum_probs=132.1

Q ss_pred             CChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCH----HHHHHHhhhCCccccccccCCchHHHH
Q 042924           22 GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA----RIVEAIISKNPECYELVDNRGWNFLHY   97 (355)
Q Consensus        22 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~   97 (355)
                      ++++||.|++.|+.+.++.+++.+.+   ..++..|+||||+|+.+|+.    +++++|++.|+++ +.+|..|+||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence            67899999999999999999987643   34422799999999999985    5999999999999 8899999999999


Q ss_pred             HHhcCC------hhHHHHHHhcChhhhhhhccCCCCCC-cHHHHHHhcCCc----hHHHHHHhc-cCcccccccCCCCcH
Q 042924           98 AVVSFR------VEKLTNLLENNPLARSLINEGDAKGN-TPLHVLAAIRPN----EFDVDLVRK-TQANYDAVNKQIVSV  165 (355)
Q Consensus        98 A~~~~~------~~~~~~Ll~~~~~~~~~~n~~d~~G~-T~Lh~A~~~~~~----~~~~~lL~~-~ga~~~~~n~~g~Tp  165 (355)
                      |+..++      .+++++|++    .|+++|.+|.+|+ ||||+|+..+..    ..++++|++ +|+|++.+|.+|+||
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~----~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~Tp  157 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLE----KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA  157 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHH----TTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred             HHHcCCcchhhHHHHHHHHHH----CCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCH
Confidence            999987      467999999    8899999999999 999999996532    357789998 999999999999999


Q ss_pred             HHHHhhCCCchHHHHHHHHHH
Q 042924          166 RHIFNYGYPELKEEIQKLSKD  186 (355)
Q Consensus       166 l~~a~~~~~~~~~~i~~~l~~  186 (355)
                      ||+|....   ..+++++|.+
T Consensus       158 L~~A~~~~---~~~~v~~L~~  175 (186)
T 3t8k_A          158 LEFVKRCQ---KPIALKMMED  175 (186)
T ss_dssp             HHHHHTTT---CHHHHHHHHH
T ss_pred             HHHHHHcC---CHHHHHHHHH
Confidence            99999665   3455555554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=2.3e-25  Score=174.05  Aligned_cols=126  Identities=35%  Similarity=0.432  Sum_probs=117.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHh
Q 042924           21 YGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVV  100 (355)
Q Consensus        21 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  100 (355)
                      +|+||||+|++.|+.++++.|++.+.++ +..+. .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCC-CCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence            5899999999999999999999998887 77776 8999999999999999999999999988 8889999999999999


Q ss_pred             cCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcc
Q 042924          101 SFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQAN  154 (355)
Q Consensus       101 ~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~  154 (355)
                      .++.+++++|++    .|.+++.+|.+|+||||+|+..++ .+++++|+++|+|
T Consensus        78 ~~~~~~~~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~-~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGH-LEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCc-HHHHHHHHHcCCC
Confidence            999999999999    678899999999999999999995 8999999999986

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.93  E-value=1.6e-24  Score=198.87  Aligned_cols=180  Identities=22%  Similarity=0.207  Sum_probs=108.3

Q ss_pred             HHHHHHHhccccccccCC-CCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            3 ALSKLLEIKKNLIKETDQ-YGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d~-~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +|+.||+ +++++|.+|. .|+||||+||..|+.+++++|+++|+++ +.++. .+.+|+|.++..+..+.+..+++.++
T Consensus        40 ~V~~LL~-~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (337)
T 4g8k_A           40 LVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKK-NGATPFILAAIAGSVKLLKLFLSKGA  116 (337)
T ss_dssp             HHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             HHHHHHH-CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-hhhcc-CCCchhHHHHhcccchhhHHhhhccc
Confidence            4555554 4566777664 4788888888888888888888877766 44444 45555555555555555555555555


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhc----------cCCCCCCcHHHHHHhcCCchHHHHHHh-c
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLIN----------EGDAKGNTPLHVLAAIRPNEFDVDLVR-K  150 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n----------~~d~~G~T~Lh~A~~~~~~~~~~~lL~-~  150 (355)
                      ++ +..|..|+||||+|+..|+.++++.+++    .|++++          ..+..|.||||+|+..|+ .+++++|+ +
T Consensus       117 ~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~----~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~-~~~v~~LL~~  190 (337)
T 4g8k_A          117 DV-NECDFYGFTAFMEAAVYGKVKALKFLYK----RGANVNLRRKTKEDQERLRKGGATALMDAAEKGH-VEVLKILLDE  190 (337)
T ss_dssp             CT-TCBCTTCCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC-HHHHHHHHHH
T ss_pred             hh-hhhccCCCCHHHHHHHcCcHHHHHHHHH----cCCCcchhhccccccccccCCCCcHHHHHHHCCC-HHHHHHHHhc
Confidence            54 5556666666666666666666666666    333332          234456666666666664 55666555 3


Q ss_pred             cCcccccccCCCCcHHHHHh-hCCCchHHHHHHHHHHcCCCC
Q 042924          151 TQANYDAVNKQIVSVRHIFN-YGYPELKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       151 ~ga~~~~~n~~g~Tpl~~a~-~~~~~~~~~i~~~l~~~~~~~  191 (355)
                      .|++++.+|..|.||++.+. .......+.+.++|.+.|.++
T Consensus       191 ~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~  232 (337)
T 4g8k_A          191 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV  232 (337)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT
T ss_pred             cCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC
Confidence            46666666666666666554 222222455666666665554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=1e-25  Score=199.01  Aligned_cols=167  Identities=15%  Similarity=0.090  Sum_probs=138.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHhhc----cCCCccccccc---CCCchHHHHHH---hcCCHHHHHHHhhhCCcc-----
Q 042924           19 DQYGWTPIHYAAYYGNYGTVNLLLE----TDQSASNIADK---DRKMTALHLAA---GKGDARIVEAIISKNPEC-----   83 (355)
Q Consensus        19 d~~G~tpLh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~---~~g~tpLh~Aa---~~g~~~~v~~Ll~~~~~~-----   83 (355)
                      +..|+||||.|++.|+.+.++.|++    .+.+. +..+.   ..|.||||+|+   ..|+.+++++|++.+++.     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            5789999999999999996655555    77776 44441   37999999999   779999999999987542     


Q ss_pred             -----ccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCC--------------CCCCcHHHHHHhcCCchHH
Q 042924           84 -----YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGD--------------AKGNTPLHVLAAIRPNEFD  144 (355)
Q Consensus        84 -----~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d--------------~~G~T~Lh~A~~~~~~~~~  144 (355)
                           .+..|..|+||||+|+..|+.++++.|++    .|++++.+|              .+|+||||+|+..|+ .++
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~-~~~  155 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVE----KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ-PHI  155 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTC-HHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHh----CCCCcCccccccccCcccccccccCCCCHHHHHHHcCC-HHH
Confidence                 24456699999999999999999999999    788999998              689999999999996 999


Q ss_pred             HHHHhc---cCcccccccCCCCcHHHHHhhCCCc------hHHHHHHHHHHcCCCC
Q 042924          145 VDLVRK---TQANYDAVNKQIVSVRHIFNYGYPE------LKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       145 ~~lL~~---~ga~~~~~n~~g~Tpl~~a~~~~~~------~~~~i~~~l~~~~~~~  191 (355)
                      +++|++   .|++++.+|.+|+||||+|+.....      ...+++++|.+.|.++
T Consensus       156 v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            999999   9999999999999999999943321      1146778888766544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.6e-25  Score=178.25  Aligned_cols=128  Identities=23%  Similarity=0.261  Sum_probs=111.5

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHH
Q 042924           17 ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLH   96 (355)
Q Consensus        17 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (355)
                      .....|.||||+|+..|+.++++.|++++.++ +.++. .|.||||+|+..|+.+++++|++.++++ +.+|.+|+||||
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~   85 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDE-YGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLH   85 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHH
Confidence            44567889999999999999999999998887 77776 8999999999999999999999998887 778899999999


Q ss_pred             HHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccC
Q 042924           97 YAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQ  152 (355)
Q Consensus        97 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g  152 (355)
                      +|+..++.++++.|++    .|.+++.+|.+|+||||+|+..++ .+++++|++.|
T Consensus        86 ~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~tpl~~A~~~~~-~~~~~~Ll~~G  136 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLK----HGADVNAQDKFGKTAFDISIGNGN-EDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHH----cCCCCcCcCCCCCCHHHHHHHCCC-HHHHHHHHHcC
Confidence            9999999999999998    678899999999999999999995 88888888765

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=6.3e-26  Score=198.25  Aligned_cols=159  Identities=15%  Similarity=0.122  Sum_probs=129.5

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcc
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC   83 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   83 (355)
                      ++.++ .++..++. +..|.||||+|+..|+.++++.|++.++++ +.++. .|.||||+|+..|+.+++++|++.++++
T Consensus        21 ~~~ll-~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~   96 (239)
T 1ycs_B           21 GSERI-AHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPND-EGITALHNAVCAGHTEIVKFLVQFGVNV   96 (239)
T ss_dssp             ------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred             HHHHh-ccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            44444 45565664 478999999999999999999999999987 88887 9999999999999999999999999998


Q ss_pred             ccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCC-cHHHHH--HhcCCchHHHHHHhccCccccccc-
Q 042924           84 YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGN-TPLHVL--AAIRPNEFDVDLVRKTQANYDAVN-  159 (355)
Q Consensus        84 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~-T~Lh~A--~~~~~~~~~~~lL~~~ga~~~~~n-  159 (355)
                       +.+|.+|+||||+|+.+|+.+++++|++    .|++++.+|.+|. ||||+|  +..|+ .+++++|++.|++++..| 
T Consensus        97 -~~~d~~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~~~~t~l~~a~~~~~g~-~~~~~~Ll~~~a~~~~~~~  170 (239)
T 1ycs_B           97 -NAADSDGWTPLHCAASCNNVQVCKFLVE----SGAAVFAMTYSDMQTAADKCEEMEEGY-TQCSQFLYGVQEKMGIMNK  170 (239)
T ss_dssp             -TCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCSSSCCCHHHHCCSSSTTC-CCHHHHHHHHHHHTTTTGG
T ss_pred             -CccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCcceecCCCCcchHHHHHHhhhcc-HHHHHHHHHhhhccccccc
Confidence             8899999999999999999999999999    7899999998887 999999  67785 889999999999998774 


Q ss_pred             --------CCCCcHHHHHhhC
Q 042924          160 --------KQIVSVRHIFNYG  172 (355)
Q Consensus       160 --------~~g~Tpl~~a~~~  172 (355)
                              ..+.++.+++...
T Consensus       171 ~~~~al~d~~~~~~~eLa~~~  191 (239)
T 1ycs_B          171 GVIYALWDYEPQNDDELPMKE  191 (239)
T ss_dssp             GEEEESSCBCCSSTTBCCBCS
T ss_pred             ceEEEEeccCCCCCCcccccC
Confidence                    4566666665543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=8.8e-27  Score=202.40  Aligned_cols=160  Identities=16%  Similarity=0.085  Sum_probs=141.5

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|++ .+.+++.+|.+|+||||+|+..|+.+++++|++.|+++ +.++. .|+||||+|+..|+.+++++|++.++
T Consensus        35 ~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga  111 (229)
T 2vge_A           35 EVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDS-HGWTPLHCAASCNDTVICMALVQHGA  111 (229)
T ss_dssp             HHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            45666665 45678999999999999999999999999999999987 88887 99999999999999999999999999


Q ss_pred             ccccccc-cCCchHHHHH--HhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcc--cc
Q 042924           82 ECYELVD-NRGWNFLHYA--VVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQAN--YD  156 (355)
Q Consensus        82 ~~~~~~d-~~g~t~Lh~A--~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~--~~  156 (355)
                      ++ +..| ..|+||||+|  +..++.+++++|++    .|++++.+|..|.||+|.++....    .++|++.|++  ++
T Consensus       112 ~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~----~ga~~~~~~~~~~~~l~~~~~~~~----~~~ll~~ga~~~~~  182 (229)
T 2vge_A          112 AI-FATTLSDGATAFEKCDPYREGYADCATYLAD----VEQSMGLMNSGAVYALWDYSAEFG----DELSFREGESVTVL  182 (229)
T ss_dssp             CT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH----HHHHTTTSGGGEEEESSCBCCSST----TBCCBCTTCEEEEE
T ss_pred             Cc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHH----cCCCcccccCCchHHHHHHhhccc----cccCcccccccccc
Confidence            98 5555 6999999999  99999999999999    889999999999999997655542    2577888988  78


Q ss_pred             cccCCCCcHHHHHhhCC
Q 042924          157 AVNKQIVSVRHIFNYGY  173 (355)
Q Consensus       157 ~~n~~g~Tpl~~a~~~~  173 (355)
                      .+|.+|+|||++|+..+
T Consensus       183 ~~d~~G~TpL~~A~~~g  199 (229)
T 2vge_A          183 RRDGPEETDWWWAALHG  199 (229)
T ss_dssp             ESSCTTCSSEEEEEETT
T ss_pred             ccCCCcccHHHHHHHcC
Confidence            89999999999998543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=1.4e-25  Score=178.64  Aligned_cols=127  Identities=23%  Similarity=0.220  Sum_probs=98.3

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHH
Q 042924           17 ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLH   96 (355)
Q Consensus        17 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (355)
                      .+|.+|+||||+|+..|+.++++.|++.+.++ +.++. .|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDH-AGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHH
Confidence            56788888888888888888888888887776 66676 7888888888888888888888888777 777888888888


Q ss_pred             HHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhcc
Q 042924           97 YAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKT  151 (355)
Q Consensus        97 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~  151 (355)
                      +|+..++.++++.|++    .|++++.+|.+|+||||+|+..+. .+++++|.+.
T Consensus        82 ~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~tpl~~A~~~~~-~~~l~~l~~~  131 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLS----YGASRNAVNIFGLRPVDYTDDESM-KSLLLLPEKN  131 (137)
T ss_dssp             HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCGGGGCCCHHH-HHHHSCC---
T ss_pred             HHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHhhccH-HHHHhhcccc
Confidence            8888888888888887    677788888888888888877663 5555554443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=6e-25  Score=174.85  Aligned_cols=129  Identities=12%  Similarity=0.063  Sum_probs=119.1

Q ss_pred             cccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCC-C
Q 042924           50 NIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAK-G  128 (355)
Q Consensus        50 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~-G  128 (355)
                      +..+. .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+. ++.+++++|++    .|.+++.+|.+ |
T Consensus         6 ~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~----~g~~~~~~~~~~g   78 (136)
T 1d9s_A            6 HMLGG-SSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLL----HGAEPNCADPATL   78 (136)
T ss_dssp             SCCCC-CCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHH----HTCCSSCCBTTTT
T ss_pred             cCCCC-CCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHH----CCCCCCCcCCCCC
Confidence            66776 9999999999999999999999999988 8889999999999999 99999999999    78899999999 9


Q ss_pred             CcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCC
Q 042924          129 NTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGR  189 (355)
Q Consensus       129 ~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~  189 (355)
                      +||||+|+..++ .+++++|+++|++++.+|.+|+||+++|....   ..+++++|.+.|+
T Consensus        79 ~t~L~~A~~~~~-~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~---~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           79 TRPVHDAAREGF-LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG---HRDIARYLHAATG  135 (136)
T ss_dssp             BCHHHHHHHHTC-HHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHT---CHHHHHHHHHHHC
T ss_pred             CCHHHHHHHcCC-HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC---CHHHHHHHHHcCC
Confidence            999999999996 99999999999999999999999999999665   4678888877664

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=9.2e-25  Score=199.84  Aligned_cols=160  Identities=17%  Similarity=0.068  Sum_probs=136.0

Q ss_pred             hHHHHHHHcCCHHHHHHhhccCCCcccc-cccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcC
Q 042924           24 TPIHYAAYYGNYGTVNLLLETDQSASNI-ADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSF  102 (355)
Q Consensus        24 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~-~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  102 (355)
                      +.+|.|+..+..++++.|++.+.++ +. ++. .|+||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+.+|
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g  175 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDE-HGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSV  175 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCS-CSCCST-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSS
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCc-ccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhc
Confidence            3458888889999999999999988 66 787 9999999999999999999999999998 889999999999999999


Q ss_pred             C---hhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHh----cCCchHHHHHHhccCc----------------------
Q 042924          103 R---VEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA----IRPNEFDVDLVRKTQA----------------------  153 (355)
Q Consensus       103 ~---~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~----~~~~~~~~~lL~~~ga----------------------  153 (355)
                      +   .++++.|++..   ..+++.+|.+|+||||+|+.    .|+ .+++++|++.++                      
T Consensus       176 ~~~~~~~~~~ll~~~---~~~~~~~d~~g~tpLh~A~~~~~~~g~-~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~  251 (327)
T 1sw6_A          176 NNYDSGTFEALLDYL---YPCLILEDSMNRTILHHIIITSGMTGC-SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP  251 (327)
T ss_dssp             HHHHTTCHHHHHHHH---GGGGGEECTTCCCHHHHHHHHHTSTTC-HHHHHHHHHHHHHHHHHGGGCCEEEC--------
T ss_pred             ccccHHHHHHHHHhh---hccccCCCCCCCCHHHHHHHHcccccc-HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc
Confidence            8   68888888832   26799999999999999999    775 888888877643                      


Q ss_pred             -----------------------ccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          154 -----------------------NYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       154 -----------------------~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                                             +++.+|.+|+||||+|+...   ..+++++|.+.|.++..
T Consensus       252 ~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g---~~~~v~~Ll~~Gad~~~  311 (327)
T 1sw6_A          252 NDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG---NISIVDALLDYGADPFI  311 (327)
T ss_dssp             --------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHC---CHHHHHHHHHTTCCTTC
T ss_pred             ccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHHcCCCCcc
Confidence                                   57888999999999999765   46889999998887643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=2.1e-25  Score=187.33  Aligned_cols=148  Identities=9%  Similarity=0.073  Sum_probs=125.1

Q ss_pred             HHHHHHHhccccccccC-CCCChHHHHHHHcCCH----HHHHHhhccCCCcccccccCCCchHHHHHHhcCC------HH
Q 042924            3 ALSKLLEIKKNLIKETD-QYGWTPIHYAAYYGNY----GTVNLLLETDQSASNIADKDRKMTALHLAAGKGD------AR   71 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~~d-~~G~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~------~~   71 (355)
                      .++.++...   ++.+| ..|+||||+|+..|+.    +++++|+++|+++ +.++. .|+||||+|+..|+      .+
T Consensus        21 ~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~-~g~TpLh~a~~~~~~~~~~~~~   95 (186)
T 3t8k_A           21 DFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTK-EGTTLFFPLFQGGGNDITGTTE   95 (186)
T ss_dssp             HHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCT-TCCCTHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCC-CCCcHHHHHHHcCCcchhhHHH
Confidence            455555544   34555 7899999999999985    5999999999998 88887 99999999999987      68


Q ss_pred             HHHHHhhhCCccccccccCCc-hHHHHHHhcCC-----hhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHH
Q 042924           72 IVEAIISKNPECYELVDNRGW-NFLHYAVVSFR-----VEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDV  145 (355)
Q Consensus        72 ~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~~-----~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~  145 (355)
                      ++++|++.|+++ +.+|..|+ ||||+|+..+.     .+++++|++.   .|+++|.+|.+|+||||+|++.++ ..++
T Consensus        96 iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~---~gad~~~~d~~G~TpL~~A~~~~~-~~~v  170 (186)
T 3t8k_A           96 LCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ---SGLQLLIKDKWGLTALEFVKRCQK-PIAL  170 (186)
T ss_dssp             HHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS---TTCCTTCCCTTSCCHHHHHHTTTC-HHHH
T ss_pred             HHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh---cCCCCcccCCCCCCHHHHHHHcCC-HHHH
Confidence            899999999999 88999999 99999999554     4578888873   578999999999999999999996 8899


Q ss_pred             HHHhccCcccccccC
Q 042924          146 DLVRKTQANYDAVNK  160 (355)
Q Consensus       146 ~lL~~~ga~~~~~n~  160 (355)
                      ++|.+...+.+.+++
T Consensus       171 ~~L~~~~~~~~~~~~  185 (186)
T 3t8k_A          171 KMMEDYIKKYNLKEN  185 (186)
T ss_dssp             HHHHHHHHHHTCCC-
T ss_pred             HHHHHHHHHHhcccC
Confidence            999888776666653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.91  E-value=2e-24  Score=192.91  Aligned_cols=144  Identities=22%  Similarity=0.220  Sum_probs=129.9

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHH-----HcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHH
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAA-----YYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAI   76 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa-----~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   76 (355)
                      +.++.|++.+..+++.+|..|+||||+|+     ..++.++++.|++.+... +..+. .|.||||+|+..|+.+++++|
T Consensus       125 ~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~tpLh~A~~~g~~~~v~~L  202 (276)
T 4hbd_A          125 PVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQ-AGQTALMLAVSHGRVDVVKAL  202 (276)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTT-TCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCC-CCCCHHHHHHHcCCHHHHHHH
Confidence            45677777766689999999999999999     678899999999998766 66666 899999999999999999999


Q ss_pred             hhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccC
Q 042924           77 ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQ  152 (355)
Q Consensus        77 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g  152 (355)
                      ++.++++ +.+|.+|+||||+|+..|+.+++++|++.   .|++++.+|.+|+||||+|+..|+ .+++++|++++
T Consensus       203 l~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~---~gad~~~~d~~g~TpL~~A~~~g~-~~iv~~Ll~~~  273 (276)
T 4hbd_A          203 LACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAV---PSCDISLTDRDGSTALMVALDAGQ-SEIASMLYSRM  273 (276)
T ss_dssp             HHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTS---TTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHHHC
T ss_pred             HhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhc---CCCCCcCcCCCCCCHHHHHHHcCC-HHHHHHHHhcc
Confidence            9999998 88999999999999999999999999984   468999999999999999999996 88888888663

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=8.3e-25  Score=183.17  Aligned_cols=140  Identities=23%  Similarity=0.188  Sum_probs=124.5

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccc-cCCchHHH
Q 042924           18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVD-NRGWNFLH   96 (355)
Q Consensus        18 ~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh   96 (355)
                      .|.+|.||||+|+..|+.++++.|++ +.++ +.++. .|+||||+|+..|+.+++++|++.++++ +.+| ..|+||||
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~  115 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDE-NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence            45689999999999999999999999 7776 78887 9999999999999999999999999998 6666 89999999


Q ss_pred             HHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCch
Q 042924           97 YAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPEL  176 (355)
Q Consensus        97 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~  176 (355)
                      +|+..|+.++++.|++    .|++++.+|.+|+||||+|++.++ .                 ..+.+|++++....   
T Consensus       116 ~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~tpl~~A~~~~~-~-----------------~~~~~~l~~a~~~~---  170 (183)
T 3deo_A          116 MAAGYVRPEVVEALVE----LGADIEVEDERGLTALELAREILK-T-----------------TPKGNPMQFGRRIG---  170 (183)
T ss_dssp             HHHHTTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHHHH-T-----------------CCCCSHHHHHHHHH---
T ss_pred             HHHhcCcHHHHHHHHH----cCCCCcCCCCCCCCHHHHHHHhcc-C-----------------cccccHHHHHHHcC---
Confidence            9999999999999999    788999999999999999998763 1                 45689999998654   


Q ss_pred             HHHHHHHHHH
Q 042924          177 KEEIQKLSKD  186 (355)
Q Consensus       177 ~~~i~~~l~~  186 (355)
                      ..+++++|.+
T Consensus       171 ~~~i~~~L~~  180 (183)
T 3deo_A          171 LEKVINVLEG  180 (183)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            6778887765

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=3.1e-25  Score=191.44  Aligned_cols=141  Identities=21%  Similarity=0.125  Sum_probs=108.5

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhh-CCccccccccCCch
Q 042924           15 IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK-NPECYELVDNRGWN   93 (355)
Q Consensus        15 ~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t   93 (355)
                      ++..|.+|.||||+||..|+.++++.|++.+.++ +.++. .|+||||+|+..|+.+++++|++. +.++ +.+|..|+|
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~t  142 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDK-AGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDT  142 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCC
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCc-cccCC-CCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCC
Confidence            4556778899999999999999999999988887 77776 899999999999999999999988 6666 788999999


Q ss_pred             HHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCC
Q 042924           94 FLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIV  163 (355)
Q Consensus        94 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~  163 (355)
                      |||+|+..|+.+++++|++    .|++++.+|.+|+||||+|+..++ .++++.|++.|++.+..|.+|.
T Consensus       143 pL~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~~~~-~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLA----KGARTDLRNIEKKLAFDMATNAAC-ASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHH----HTCCSCCCCTTSCCHHHHCCSHHH-HHHHC-----------------
T ss_pred             HHHHHHHcCCHHHHHHHHH----cCCCCccccCCCCCHHHHhcchhH-HHHHHHHhccchhhhccchhhh
Confidence            9999999999999999998    788899999999999999998884 8888888888888887776654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=9.2e-25  Score=173.90  Aligned_cols=126  Identities=25%  Similarity=0.268  Sum_probs=112.9

Q ss_pred             ccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCc
Q 042924           51 IADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNT  130 (355)
Q Consensus        51 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T  130 (355)
                      .++. .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..++.+++++|++    .|.+++.+|.+|+|
T Consensus         5 ~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t   78 (137)
T 3c5r_A            5 FTNH-RGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQ----HKALVNTTGYQNDS   78 (137)
T ss_dssp             CCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCGGGCC
T ss_pred             CcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH----cCCcccCcCCCCCC
Confidence            4555 8999999999999999999999999988 8889999999999999999999999999    78899999999999


Q ss_pred             HHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHH
Q 042924          131 PLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKD  186 (355)
Q Consensus       131 ~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~  186 (355)
                      |||+|+..++ .+++++|+++|++++.+|.+|+||+++|....   ..++++++.+
T Consensus        79 ~L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~---~~~~l~~l~~  130 (137)
T 3c5r_A           79 PLHDAAKNGH-VDIVKLLLSYGASRNAVNIFGLRPVDYTDDES---MKSLLLLPEK  130 (137)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHH---HHHHHSCC--
T ss_pred             HHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhcc---HHHHHhhccc
Confidence            9999999996 89999999999999999999999999998433   4555555544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=3.5e-24  Score=187.83  Aligned_cols=141  Identities=23%  Similarity=0.185  Sum_probs=124.8

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccc-cCCchHHH
Q 042924           18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVD-NRGWNFLH   96 (355)
Q Consensus        18 ~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh   96 (355)
                      .+.+|.||||+|++.|+.++++.|++ +.++ +.++. .|+||||+|+..|+.+++++|++.++++ +.+| ..|+||||
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~  116 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDE-NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence            34679999999999999999999999 7776 88887 9999999999999999999999999998 6666 88999999


Q ss_pred             HHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCch
Q 042924           97 YAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPEL  176 (355)
Q Consensus        97 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~  176 (355)
                      +|+.+|+.+++++|++    .|++++.+|.+|+||||+|+..++                  +..+.||+++|....   
T Consensus       117 ~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g---  171 (244)
T 3ui2_A          117 MAAGYVRPEVVEALVE----LGADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIG---  171 (244)
T ss_dssp             HHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHH---
T ss_pred             HHHHcCCHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcC---
Confidence            9999999999999999    788999999999999999987553                  256899999999654   


Q ss_pred             HHHHHHHHHHc
Q 042924          177 KEEIQKLSKDV  187 (355)
Q Consensus       177 ~~~i~~~l~~~  187 (355)
                      ..+++++|.+.
T Consensus       172 ~~~iv~~L~~~  182 (244)
T 3ui2_A          172 LEKVINVLEGQ  182 (244)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHh
Confidence            66788888763

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=9.8e-24  Score=167.79  Aligned_cols=124  Identities=23%  Similarity=0.177  Sum_probs=114.4

Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHH
Q 042924           56 RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL  135 (355)
Q Consensus        56 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A  135 (355)
                      .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.+++.++++.|++    .|.++|.+|.+|+||||+|
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHH
Confidence            7889999999999999999999999988 8889999999999999999999999999    7889999999999999999


Q ss_pred             HhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcC
Q 042924          136 AAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVG  188 (355)
Q Consensus       136 ~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~  188 (355)
                      +..++ .+++++|+++|++++.+|.+|+||+++|....   ..+++++|.+.|
T Consensus        88 ~~~~~-~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~---~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGH-LEIAEVLLKHGADVNAQDKFGKTAFDISIGNG---NEDLAEILQKLN  136 (136)
T ss_dssp             HHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT---CHHHHHHHHHC-
T ss_pred             HHcCC-HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCC---CHHHHHHHHHcC
Confidence            99996 99999999999999999999999999999765   457777777643

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=3.3e-23  Score=161.71  Aligned_cols=125  Identities=29%  Similarity=0.318  Sum_probs=116.2

Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHH
Q 042924           56 RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL  135 (355)
Q Consensus        56 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A  135 (355)
                      +|+||||.|+..|+.+++++|++.++++ +..|..|+||||+|+..++.+++++|++    .|.+++.+|..|+||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHH----cCCCCcccCCCCCcHHHHH
Confidence            4899999999999999999999999988 7889999999999999999999999999    6789999999999999999


Q ss_pred             HhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCC
Q 042924          136 AAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGR  189 (355)
Q Consensus       136 ~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~  189 (355)
                      +..++ .+++++|+++|++++.+|.+|.||+++|....   ..+++++|.+.|+
T Consensus        76 ~~~~~-~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~---~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           76 ARNGH-LEVVKLLLEAGADVNAKDKNGRTPLHLAARNG---HLEVVKLLLEAGA  125 (126)
T ss_dssp             HHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT---CHHHHHHHHHHTC
T ss_pred             HHcCh-HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC---cHHHHHHHHHcCC
Confidence            99995 89999999999999999999999999999765   5678888887765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=3e-23  Score=161.97  Aligned_cols=108  Identities=21%  Similarity=0.104  Sum_probs=53.8

Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHH
Q 042924           56 RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL  135 (355)
Q Consensus        56 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A  135 (355)
                      .|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..++.+++++|++    .|.++|.+|.+|+||||+|
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLL----KGADINAPDKHHITPLLSA   80 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSCCHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHH
Confidence            3445555555555555555555544444 4444455555555555555555555554    3444555555555555555


Q ss_pred             HhcCCchHHHHHHhccCcccccccCCCCcHHHHH
Q 042924          136 AAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIF  169 (355)
Q Consensus       136 ~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a  169 (355)
                      +..++ .+++++|+++|++++.+|.+|+||+++|
T Consensus        81 ~~~~~-~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           81 VYEGH-VSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             HHcCC-HHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            55553 4444555555555555555555555554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=3.5e-23  Score=161.62  Aligned_cols=113  Identities=19%  Similarity=0.125  Sum_probs=103.6

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHH
Q 042924           18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHY   97 (355)
Q Consensus        18 ~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~   97 (355)
                      .+..|.||||+|+..|+.++++.|++.+.++ +.++. .|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~   79 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLE-GGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLS   79 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCT-TSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence            3578999999999999999999999999887 78887 9999999999999999999999999998 8899999999999


Q ss_pred             HHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHh
Q 042924           98 AVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA  137 (355)
Q Consensus        98 A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~  137 (355)
                      |+..++.++++.|++    .|++++.+|.+|+||||+|..
T Consensus        80 A~~~~~~~~v~~Ll~----~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLS----KGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHCCC
T ss_pred             HHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHhCC
Confidence            999999999999999    788999999999999999943

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=2.8e-23  Score=187.61  Aligned_cols=139  Identities=20%  Similarity=0.156  Sum_probs=120.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHhhccCCCcccc------cccCCCchHHHHHHhc---CCHHHHHHHhhhCCccccccccCC
Q 042924           21 YGWTPIHYAAYYGNYGTVNLLLETDQSASNI------ADKDRKMTALHLAAGK---GDARIVEAIISKNPECYELVDNRG   91 (355)
Q Consensus        21 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~------~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g   91 (355)
                      .+.++||.|+..|+.+.++.|++.+.++ +.      .+. .|.||||+|+..   |+.+++++|++.++++ +.+|.+|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G  226 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQA-PEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADG  226 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCS-CEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCC-CCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCC
Confidence            3557899999999999999999999887 44      455 899999999987   8999999999999988 8889999


Q ss_pred             chHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhh
Q 042924           92 WNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNY  171 (355)
Q Consensus        92 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~  171 (355)
                      +||||+|+..|+.+++++|++    .|++++.+|.+|+||||+|+..++ .+++++|++.|++      .|.||+|+|+.
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~----~gad~~~~d~~G~TpL~~A~~~~~-~~iv~~Ll~~ga~------~g~tpLh~A~~  295 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLK----GRALVGTVNEAGETALDIARKKHH-KECEELLEQAQAG------TFAFPLHVDYS  295 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH----TTCCCSCCCTTSCCHHHHHHHHTC-HHHHHHHHHHHHH------TTSSCCC----
T ss_pred             CCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHHHhcCC------CCCChhHHHHh
Confidence            999999999999999999999    788999999999999999999996 8999999999886      58999999985


Q ss_pred             CC
Q 042924          172 GY  173 (355)
Q Consensus       172 ~~  173 (355)
                      ..
T Consensus       296 ~g  297 (301)
T 2b0o_E          296 WV  297 (301)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=2.6e-23  Score=169.40  Aligned_cols=131  Identities=14%  Similarity=0.040  Sum_probs=115.8

Q ss_pred             cccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCc-
Q 042924           52 ADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNT-  130 (355)
Q Consensus        52 ~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T-  130 (355)
                      .+. .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+ +|+.+++++|++    .|.++|.+|.+|+| 
T Consensus         8 ~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~----~g~~~~~~d~~g~tt   80 (156)
T 1bi7_B            8 SME-PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLL----HGAEPNCADPATLTR   80 (156)
T ss_dssp             --C-CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHT----TTCCCCCCCTTTCCC
T ss_pred             CCc-cchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHH----cCCCCCCcCCCCCcH
Confidence            344 8999999999999999999999999988 888999999999985 899999999999    78899999999999 


Q ss_pred             HHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          131 PLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       131 ~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      |||+|+..|+ .+++++|+++|++++.+|.+|+||+|+|....   ..+++++|.+.|.++..
T Consensus        81 pL~~A~~~~~-~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~---~~~~v~~Ll~~ga~~~~  139 (156)
T 1bi7_B           81 PVHDAAREGF-LDTLVVLHRAGARLDVRDAWGRLPVDLAEELG---HRDVARYLRAAAGGTRG  139 (156)
T ss_dssp             HHHHHHHHTC-HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHT---CHHHHHHHSSCC-----
T ss_pred             HHHHHHHCCC-HHHHHHHHHcCCCCcccCCCCCCHHHHHHHhC---HHHHHHHHHHcCCCCCc
Confidence            9999999996 89999999999999999999999999999665   56889999988877643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=2e-23  Score=174.68  Aligned_cols=135  Identities=18%  Similarity=0.161  Sum_probs=116.0

Q ss_pred             HHHcCCHHHHHHhhccCCCcc----------cccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHH
Q 042924           29 AAYYGNYGTVNLLLETDQSAS----------NIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYA   98 (355)
Q Consensus        29 Aa~~g~~~~v~~Ll~~~~~~~----------~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A   98 (355)
                      |++.|..+++++|++.+....          ...+. +|.||||+|+..|+.++++.|++ +.++ +.+|..|+||||+|
T Consensus         7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A   83 (183)
T 3deo_A            7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS-EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFV   83 (183)
T ss_dssp             EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHH-HHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHH
T ss_pred             HHHhcCCchhHHHHHHhCCCCccccchhcccccCCC-CCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHH
Confidence            345566666777775432221          11233 78999999999999999999999 7777 88999999999999


Q ss_pred             HhcCChhHHHHHHhcChhhhhhhccCC-CCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhh
Q 042924           99 VVSFRVEKLTNLLENNPLARSLINEGD-AKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNY  171 (355)
Q Consensus        99 ~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~  171 (355)
                      +.+|+.+++++|++    .|+++|.+| .+|+||||+|+..|+ .+++++|+++|++++.+|.+|+||+|+|..
T Consensus        84 ~~~~~~~~v~~Ll~----~ga~~~~~~~~~g~tpL~~A~~~~~-~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  152 (183)
T 3deo_A           84 AGLGSDKCVRLLAE----AGADLDHRDMRGGLTALHMAAGYVR-PEVVEALVELGADIEVEDERGLTALELARE  152 (183)
T ss_dssp             HHHTCHHHHHHHHH----TTCCTTCCCSSSSCCHHHHHHHTTC-HHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHH----cCCCCCcCCCCCCCCHHHHHHhcCc-HHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence            99999999999999    788999998 899999999999996 899999999999999999999999999984

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.87  E-value=8.2e-24  Score=196.41  Aligned_cols=156  Identities=11%  Similarity=0.013  Sum_probs=124.4

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHhhccCCCcc--cccccCCCchHHHHHHhcCCHHHHHHHhhhCCcc--ccccccCC
Q 042924           16 KETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS--NIADKDRKMTALHLAAGKGDARIVEAIISKNPEC--YELVDNRG   91 (355)
Q Consensus        16 ~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~--~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g   91 (355)
                      ...+.++.||||+||+.|+.+++++|++.++...  ...+. .|.||||+|+.+|+.+++++|++.+++.  .+..+.+ 
T Consensus        86 ~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~-~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-  163 (376)
T 2aja_A           86 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-  163 (376)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH-HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-
T ss_pred             HHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhcc-CCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-
Confidence            3456677899999999999999999999887321  12333 6789999999999999999999999752  1233333 


Q ss_pred             chHHHHHHhcCChhHHHHHHhcChhhhhhhcc--CCCCCCcHHHHHH-hcCCchHHHHHHhccCcccccccCCCCcHHHH
Q 042924           92 WNFLHYAVVSFRVEKLTNLLENNPLARSLINE--GDAKGNTPLHVLA-AIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI  168 (355)
Q Consensus        92 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~--~d~~G~T~Lh~A~-~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~  168 (355)
                      +||||+|+.+|+.+++++|++    .|++++.  +|.+|+||||+|+ ..|+ .+++++|++.|++       |.||++.
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~----~ga~~~~~~~d~~g~TpL~~Aa~~~G~-~eiv~~Ll~~ga~-------~~taL~~  231 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCE----LAPTEATAMIQAENYYAFRWAAVGRGH-HNVINFLLDCPVM-------LAYAEIH  231 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH----SCGGGHHHHHHHHHHHHHHHHHSTTCC-HHHHHHHTTSHHH-------HHHHHHC
T ss_pred             CCHHHHHHHCCCHHHHHHHHH----cCCccchhccCCCCCCHHHHHHHHCCC-HHHHHHHHhCCCc-------cchHHHH
Confidence            999999999999999999999    6677776  8889999999999 9996 9999999998753       8999999


Q ss_pred             HhhCCCchHHHHHHHHHHcC
Q 042924          169 FNYGYPELKEEIQKLSKDVG  188 (355)
Q Consensus       169 a~~~~~~~~~~i~~~l~~~~  188 (355)
                      |+..+   ..+++++|.+.|
T Consensus       232 Aa~~g---~~evv~lL~~~g  248 (376)
T 2aja_A          232 EFEYG---EKYVNPFIARHV  248 (376)
T ss_dssp             TTTTT---TTTHHHHHHHHH
T ss_pred             HHHCC---CHHHHHHHHhcC
Confidence            98654   234666666533

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=1.4e-22  Score=174.83  Aligned_cols=165  Identities=16%  Similarity=0.058  Sum_probs=128.6

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHhhccCC--------------CcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcc
Q 042924           18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQ--------------SASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC   83 (355)
Q Consensus        18 ~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~--------------~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   83 (355)
                      .|.++.++.+++.+.|+...+..+.+.+-              ...+..+. .|.||||+|+..|+.++++.|++.+.++
T Consensus        21 ~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~   99 (222)
T 3ehr_A           21 YTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAE-SIDNPLHEAAKRGNLSWLRECLDNRVGV   99 (222)
T ss_dssp             SCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEE-EESCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhcccccc-ccccccccccccCcHHHHHHHHhCCCCc
Confidence            35667777787777777544433332110              00122333 7899999999999999999999999988


Q ss_pred             ccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCC
Q 042924           84 YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIV  163 (355)
Q Consensus        84 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~  163 (355)
                       +.+|..|+||||+|+.+|+.++++.|++.   .|.++|.+|.+|+||||+|+..|+ .+++++|+++|++++.+|.+|+
T Consensus       100 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~d~~g~tpL~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g~  174 (222)
T 3ehr_A          100 -NGLDKAGSTALYWACHGGHKDIVEMLFTQ---PNIELNQQNKLGDTALHAAAWKGY-ADIVQLLLAKGARTDLRNIEKK  174 (222)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHTTS---TTCCCCCCCTTSCCHHHHHHHHTC-HHHHHHHHHHTCCSCCCCTTSC
T ss_pred             -cccCCCCCCHHHHHHHcCCHHHHHHHHcC---CCCCccccCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCccccCCCC
Confidence             88899999999999999999999999993   278999999999999999999996 9999999999999999999999


Q ss_pred             cHHHHHhhCCCchHHHHHHHHHHcCCCC
Q 042924          164 SVRHIFNYGYPELKEEIQKLSKDVGRGQ  191 (355)
Q Consensus       164 Tpl~~a~~~~~~~~~~i~~~l~~~~~~~  191 (355)
                      ||+++|....   ..++++.+.+.+..+
T Consensus       175 t~l~~A~~~~---~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          175 LAFDMATNAA---CASLLKKKQGTDAVR  199 (222)
T ss_dssp             CHHHHCCSHH---HHHHHC---------
T ss_pred             CHHHHhcchh---HHHHHHHHhccchhh
Confidence            9999998543   566777777655544

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=3.2e-22  Score=185.06  Aligned_cols=147  Identities=16%  Similarity=0.095  Sum_probs=115.9

Q ss_pred             cCCCCChHHHHHHHc-CCHHHHHHhhccCCCccccccc-CCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHH
Q 042924           18 TDQYGWTPIHYAAYY-GNYGTVNLLLETDQSASNIADK-DRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFL   95 (355)
Q Consensus        18 ~d~~G~tpLh~Aa~~-g~~~~v~~Ll~~~~~~~~~~~~-~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L   95 (355)
                      .+..+.||||.|+.. |+.++++.|++.|+++ +..+. ..|.||||+|+..|+.+++++|++.++++ +.+|..|+|||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpL  272 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPL  272 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence            334567899999999 9999999999999988 66661 38999999999999999999999999998 88999999999


Q ss_pred             HHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccC---cccccccCCCCcHHHHHhh
Q 042924           96 HYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQ---ANYDAVNKQIVSVRHIFNY  171 (355)
Q Consensus        96 h~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g---a~~~~~n~~g~Tpl~~a~~  171 (355)
                      |+|+..|+.+++++|++    .|++++.+|.+|+||||+|+..++ .+++++|++.+   .+....+..+.|+++++..
T Consensus       273 h~A~~~g~~~~v~~LL~----~Gad~~~~d~~G~TpL~~A~~~g~-~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          273 HHATILGHTGLACLFLK----RGADLGARDSEGRDPLTIAMETAN-ADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHHHC---------------------
T ss_pred             HHHHHcCcHHHHHHHHH----CcCCCCCcCCCCCCHHHHHHHCCC-HHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            99999999999999999    789999999999999999999996 88999998665   4445667788899988874

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=4.1e-23  Score=180.96  Aligned_cols=140  Identities=16%  Similarity=0.064  Sum_probs=121.8

Q ss_pred             CCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHH
Q 042924           20 QYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAV   99 (355)
Q Consensus        20 ~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~   99 (355)
                      ..|.+++..++..|+.+.+..+...+.    ..+. .|.||||+|+..|+.++++.|++ +.++ +.+|..|+||||+|+
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~----~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~   85 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAA----DVVS-EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVA   85 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCH----HHHH-HHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHH
T ss_pred             CCCccHHHHHHHcCCCccccccccccc----cccc-CCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHH
Confidence            456677777777777766655554432    2233 78999999999999999999999 7777 889999999999999


Q ss_pred             hcCChhHHHHHHhcChhhhhhhccCC-CCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhh
Q 042924          100 VSFRVEKLTNLLENNPLARSLINEGD-AKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNY  171 (355)
Q Consensus       100 ~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~  171 (355)
                      .+|+.+++++|++    .|+++|.+| .+|+||||+|+..|+ .+++++|+++|++++.+|.+|.||+|+|..
T Consensus        86 ~~g~~~~v~~Ll~----~ga~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A           86 GLGSDKCVRLLAE----AGADLDHRDMRGGLTALHMAAGYVR-PEVVEALVELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             HHTCHHHHHHHHH----TTCCTTCCCSSSCCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HCCCHHHHHHHHH----cCCCCCcCCCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            9999999999999    788999998 889999999999996 899999999999999999999999999983

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=7.4e-21  Score=169.79  Aligned_cols=170  Identities=17%  Similarity=0.137  Sum_probs=138.5

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHhhccCC-------Ccc-c-------cc-----cc---------CCCchHHHHHHhc
Q 042924           17 ETDQYGWTPIHYAAYYGNYGTVNLLLETDQ-------SAS-N-------IA-----DK---------DRKMTALHLAAGK   67 (355)
Q Consensus        17 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~-------~~~-~-------~~-----~~---------~~g~tpLh~Aa~~   67 (355)
                      ..|..+.++++.+...|+..+.+.+-..-+       ... .       .+     ..         ....++||.|+..
T Consensus        61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~  140 (278)
T 1dcq_A           61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT  140 (278)
T ss_dssp             TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred             ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence            367788899999999999766555532111       110 0       00     00         0224689999999


Q ss_pred             CCHHHHHHHhhhCCccc-----cccccCCchHHHHHHhc---CChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcC
Q 042924           68 GDARIVEAIISKNPECY-----ELVDNRGWNFLHYAVVS---FRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIR  139 (355)
Q Consensus        68 g~~~~v~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~---~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~  139 (355)
                      |+.+.++.+++.+++..     +..|..|+||||+|+..   ++.+++++|++    .|+++|.+|.+|+||||+|+..|
T Consensus       141 ~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~----~ga~in~~d~~g~TpLh~A~~~g  216 (278)
T 1dcq_A          141 RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ----NSGNLDKQTGKGSTALHYCCLTD  216 (278)
T ss_dssp             TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH----HCSCTTCCCTTCCCHHHHHHHTT
T ss_pred             cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHH----CCCCccccCCCCCCHHHHHHHcC
Confidence            99999999999999863     44588999999999999   89999999999    78999999999999999999999


Q ss_pred             CchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCCC
Q 042924          140 PNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYSD  194 (355)
Q Consensus       140 ~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~~  194 (355)
                      + .+++++|+++|+|++.+|.+|+||||+|....   ..+++++|.+.|.++...
T Consensus       217 ~-~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~---~~~~v~~Ll~~ga~~~~~  267 (278)
T 1dcq_A          217 N-AECLKLLLRGKASIEIANESGETPLDIAKRLK---HEHCEELLTQALSGRFNS  267 (278)
T ss_dssp             C-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT---CHHHHHHHHHHHTTCCCS
T ss_pred             C-HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcC---CHHHHHHHHHcCCCCCCc
Confidence            6 89999999999999999999999999999765   568889999877766543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=1.8e-21  Score=175.72  Aligned_cols=124  Identities=16%  Similarity=0.075  Sum_probs=105.1

Q ss_pred             HHHHHHHhccccccc------cCCCCChHHHHHHHc---CCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHH
Q 042924            3 ALSKLLEIKKNLIKE------TDQYGWTPIHYAAYY---GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIV   73 (355)
Q Consensus         3 ~v~~lL~~~~~~~~~------~d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v   73 (355)
                      .+++++.. +.+++.      .|.+|+||||+|+..   |+.+++++|++.|+++ +.++. .|+||||+|+..|+.+++
T Consensus       166 ~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~-~G~TpLh~A~~~g~~~~v  242 (301)
T 2b0o_E          166 SVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAA-DGNTALHYAALYNQPDCL  242 (301)
T ss_dssp             HHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCT-TCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCC-CCCCHHHHHHHcCCHHHH
Confidence            46666654 455666      689999999999997   8999999999999987 88887 999999999999999999


Q ss_pred             HHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCC
Q 042924           74 EAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRP  140 (355)
Q Consensus        74 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~  140 (355)
                      ++|++.++++ +.+|.+|+||||+|+..++.+++++|++    .|++      .|+||||+|+..|+
T Consensus       243 ~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~----~ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          243 KLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQ----AQAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHH----HHHH------TTSSCCC-------
T ss_pred             HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH----hcCC------CCCChhHHHHhcCC
Confidence            9999999998 8899999999999999999999999999    5554      68999999999885

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=1.9e-21  Score=149.79  Aligned_cols=104  Identities=26%  Similarity=0.225  Sum_probs=51.1

Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHH
Q 042924           56 RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL  135 (355)
Q Consensus        56 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A  135 (355)
                      +|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..++.+++++|++    .|.+++.+|.+|+||||+|
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA----KGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTT----TTCCTTCCCTTCCCTTHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH----cCCCCcccCCCCCCHHHHH
Confidence            4444444444444444444444444443 4444445555555555555555555544    3444555555555555555


Q ss_pred             HhcCCchHHHHHHhccCcccccccCCCCcH
Q 042924          136 AAIRPNEFDVDLVRKTQANYDAVNKQIVSV  165 (355)
Q Consensus       136 ~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tp  165 (355)
                      +..++ .+++++|+++|++++.++..|.||
T Consensus        83 ~~~~~-~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGH-HEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HTTTC-HHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHCCC-HHHHHHHHHcCCCCCcCCcccccc
Confidence            55553 455555555555555555555544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=2.5e-21  Score=172.85  Aligned_cols=127  Identities=19%  Similarity=0.231  Sum_probs=116.3

Q ss_pred             CChHHHHHHHcCCHHHHHHhhccCCCcc-----cccccCCCchHHHHHHhc---CCHHHHHHHhhhCCccccccccCCch
Q 042924           22 GWTPIHYAAYYGNYGTVNLLLETDQSAS-----NIADKDRKMTALHLAAGK---GDARIVEAIISKNPECYELVDNRGWN   93 (355)
Q Consensus        22 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t   93 (355)
                      ..++||.|+..|+.+.++.+++.|.+..     +..+. .|.||||+|+..   |+.+++++|++.++++ +.+|.+|+|
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~-~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~T  207 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHE-PDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSS-TTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhcccccccc-CCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCC
Confidence            3579999999999999999999988752     23355 899999999999   8999999999999998 889999999


Q ss_pred             HHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCccc
Q 042924           94 FLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANY  155 (355)
Q Consensus        94 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~  155 (355)
                      |||+|+.+|+.++++.|++    .|++++.+|.+|+||||+|+..|+ .+++++|+++|++.
T Consensus       208 pLh~A~~~g~~~~v~~Ll~----~gad~~~~d~~g~tpL~~A~~~~~-~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLR----GKASIEIANESGETPLDIAKRLKH-EHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHH----cCCCCCCccCCCCCHHHHHHHcCC-HHHHHHHHHcCCCC
Confidence            9999999999999999999    789999999999999999999996 89999999998853

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=5.8e-21  Score=141.32  Aligned_cols=88  Identities=36%  Similarity=0.496  Sum_probs=44.6

Q ss_pred             CChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhc
Q 042924           22 GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVS  101 (355)
Q Consensus        22 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  101 (355)
                      |+||||+|+..|+.+++++|++.+.++ +.++. .|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            455555555555555555555555444 44444 4555555555555555555555555444 44455555555555555


Q ss_pred             CChhHHHHHHh
Q 042924          102 FRVEKLTNLLE  112 (355)
Q Consensus       102 ~~~~~~~~Ll~  112 (355)
                      |+.+++++|++
T Consensus        79 ~~~~~~~~Ll~   89 (93)
T 1n0q_A           79 GHLEVVKLLLE   89 (93)
T ss_dssp             TCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            55555555544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=3.1e-21  Score=148.53  Aligned_cols=109  Identities=27%  Similarity=0.235  Sum_probs=101.0

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHH
Q 042924           17 ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLH   96 (355)
Q Consensus        17 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (355)
                      .+|++|+||||+|+..|+.++++.|++.+.++ +.++. .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSK-DGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCS-SSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHH
Confidence            57899999999999999999999999999887 77887 9999999999999999999999999998 888999999999


Q ss_pred             HHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHH
Q 042924           97 YAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPL  132 (355)
Q Consensus        97 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~L  132 (355)
                      +|+..++.++++.|++    .|+++|.++..|.||-
T Consensus        81 ~A~~~~~~~~~~~Ll~----~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDA----KGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHT----TSSSHHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHH----cCCCCCcCCccccccc
Confidence            9999999999999999    7899999999999874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=9.8e-21  Score=140.07  Aligned_cols=93  Identities=31%  Similarity=0.362  Sum_probs=87.3

Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHH
Q 042924           56 RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL  135 (355)
Q Consensus        56 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A  135 (355)
                      +|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.+++.+++++|++    .|++++.+|.+|+||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHH
Confidence            4889999999999999999999999998 8899999999999999999999999999    7889999999999999999


Q ss_pred             HhcCCchHHHHHHhccCcc
Q 042924          136 AAIRPNEFDVDLVRKTQAN  154 (355)
Q Consensus       136 ~~~~~~~~~~~lL~~~ga~  154 (355)
                      +..++ .+++++|+++|++
T Consensus        76 ~~~~~-~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           76 ARNGH-LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHTTC-HHHHHHHHHTTCC
T ss_pred             HHcCC-HHHHHHHHHcCCC
Confidence            99996 9999999999985

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.81  E-value=1.4e-21  Score=181.29  Aligned_cols=144  Identities=14%  Similarity=0.161  Sum_probs=116.9

Q ss_pred             hHHHHHHHhccc--cccccCCCCChHHHHHHHcCCHHHHHHhhccCCCc--ccccccCCCchHHHHHHhcCCHHHHHHHh
Q 042924            2 AALSKLLEIKKN--LIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSA--SNIADKDRKMTALHLAAGKGDARIVEAII   77 (355)
Q Consensus         2 ~~v~~lL~~~~~--~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll   77 (355)
                      ++++.|++.+..  ..+..|..|.||||+||+.|+.+++++|+++|++.  .+..+. + .||||+|+..|+.+++++|+
T Consensus       106 e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~-~-~TpLh~Aa~~G~~eiv~~Ll  183 (376)
T 2aja_A          106 SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-N-YHAFRLAAENGHLHVLNRLC  183 (376)
T ss_dssp             HHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-H-HHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-C-CCHHHHHHHCCCHHHHHHHH
Confidence            345555554431  12345567899999999999999999999999753  133443 3 89999999999999999999


Q ss_pred             hhCCccccc--cccCCchHHHHHH-hcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcc
Q 042924           78 SKNPECYEL--VDNRGWNFLHYAV-VSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQAN  154 (355)
Q Consensus        78 ~~~~~~~~~--~d~~g~t~Lh~A~-~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~  154 (355)
                      +.++++ +.  .|..|+||||+|+ .+|+.+++++|++    .|.       +|+||||+|+..|+ .+++++|++.|++
T Consensus       184 ~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~----~ga-------~~~taL~~Aa~~g~-~evv~lL~~~ga~  250 (376)
T 2aja_A          184 ELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLD----CPV-------MLAYAEIHEFEYGE-KYVNPFIARHVNR  250 (376)
T ss_dssp             HSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT----SHH-------HHHHHHHCTTTTTT-TTHHHHHHHHHHH
T ss_pred             HcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHh----CCC-------ccchHHHHHHHCCC-HHHHHHHHhcCcc
Confidence            999987 44  7899999999999 9999999999999    443       28999999999996 7799999999999


Q ss_pred             cccccC
Q 042924          155 YDAVNK  160 (355)
Q Consensus       155 ~~~~n~  160 (355)
                      ++..+.
T Consensus       251 ~~~~~~  256 (376)
T 2aja_A          251 LKEMHD  256 (376)
T ss_dssp             HHHHHT
T ss_pred             cccccH
Confidence            877654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=1.3e-19  Score=167.49  Aligned_cols=124  Identities=17%  Similarity=0.105  Sum_probs=113.7

Q ss_pred             CCchHHHHHHhc-CCHHHHHHHhhhCCccccccc--cCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHH
Q 042924           56 RKMTALHLAAGK-GDARIVEAIISKNPECYELVD--NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPL  132 (355)
Q Consensus        56 ~g~tpLh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~L  132 (355)
                      .+.||||.|+.. |+.++++.|++.++++ +..|  ..|+||||+|+..|+.+++++|++    .|+++|.+|.+|+|||
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~----~Gadvn~~d~~G~TpL  272 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQ----NGANVNQADSAGRGPL  272 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHH
Confidence            456899999999 9999999999999998 6677  899999999999999999999999    7899999999999999


Q ss_pred             HHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcC
Q 042924          133 HVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVG  188 (355)
Q Consensus       133 h~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~  188 (355)
                      |+|+..|+ .+++++|+++|++++.+|.+|.||||+|....   ..+++++|..++
T Consensus       273 h~A~~~g~-~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g---~~~iv~lLl~~~  324 (368)
T 3jue_A          273 HHATILGH-TGLACLFLKRGADLGARDSEGRDPLTIAMETA---NADIVTLLRLAK  324 (368)
T ss_dssp             HHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHHHcCc-HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCC---CHHHHHHHHHcC
Confidence            99999996 89999999999999999999999999999765   456777777755

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.76  E-value=1.2e-18  Score=133.12  Aligned_cols=96  Identities=19%  Similarity=0.152  Sum_probs=66.0

Q ss_pred             cccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCC
Q 042924           12 KNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRG   91 (355)
Q Consensus        12 ~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g   91 (355)
                      +......|.+|.||||+|+..|+.++++.|++.++++ +.++. .|.||||+|+..|+.+++++|++.++++ +.+|..|
T Consensus        14 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~-~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g   90 (110)
T 2zgd_A           14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDK-NGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFG   90 (110)
T ss_dssp             --------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred             CCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCC
Confidence            3445666777777777777777777777777777766 66665 7777777777777777777777777776 6677777


Q ss_pred             chHHHHHHhcCChhHHHHH
Q 042924           92 WNFLHYAVVSFRVEKLTNL  110 (355)
Q Consensus        92 ~t~Lh~A~~~~~~~~~~~L  110 (355)
                      +||||+|+.+++.+++++|
T Consensus        91 ~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHh
Confidence            7777777777777776654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=2.3e-17  Score=125.87  Aligned_cols=91  Identities=21%  Similarity=0.174  Sum_probs=76.9

Q ss_pred             ccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCc
Q 042924           51 IADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNT  130 (355)
Q Consensus        51 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T  130 (355)
                      ..+. +|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.+|+.+++++|++    .|++++.+|.+|+|
T Consensus        19 ~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~----~ga~~~~~d~~g~t   92 (110)
T 2zgd_A           19 HMGS-DLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLE----AGADVXAQDKFGKT   92 (110)
T ss_dssp             ---C-CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCC
T ss_pred             ccCC-ccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccccCCCc
Confidence            3444 8889999999999999999999988887 7788899999999999999999999998    67888899999999


Q ss_pred             HHHHHHhcCCchHHHHHH
Q 042924          131 PLHVLAAIRPNEFDVDLV  148 (355)
Q Consensus       131 ~Lh~A~~~~~~~~~~~lL  148 (355)
                      |||+|+..++ .+++++|
T Consensus        93 pl~~A~~~~~-~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGN-EDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTC-HHHHHHH
T ss_pred             HHHHHHHcCC-HHHHHHh
Confidence            9999999885 7777765

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}

Probab=83.64  E-value=4.9  Score=35.80  Aligned_cols=51  Identities=20%  Similarity=0.277  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhHh----ccCCcc-ee-hhhHHHHHHHHHHHHHHHhhcc
Q 042924          304 WFTIFSMGAMVIAFVTGTYAM----LVPSLG-LA-IITCLIGLSFFLLVIWIVRLSI  354 (355)
Q Consensus       304 ~~~~~s~~~~~~af~~~~~~v----~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~  354 (355)
                      .++.+|++.+..+|++|+|=+    +|...| +. .+++++.+++.+..+|+||++.
T Consensus       281 ~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~~fkrk~  337 (339)
T 4ev6_A          281 ILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFVYIFRRSG  337 (339)
T ss_dssp             HHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            567788889999999999954    333322 22 2223333455556667777653

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A

Probab=82.06  E-value=4.6  Score=36.40  Aligned_cols=51  Identities=14%  Similarity=0.131  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHh----ccCCcc-eehhh-HHHHHHHHHHHHHHHhhc
Q 042924          303 VWFTIFSMGAMVIAFVTGTYAM----LVPSLG-LAIIT-CLIGLSFFLLVIWIVRLS  353 (355)
Q Consensus       303 ~~~~~~s~~~~~~af~~~~~~v----~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  353 (355)
                      ..++.+|++.+..+|++|+|=+    +|...| +.+.+ +++.++..+..+|+||++
T Consensus       304 k~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk  360 (363)
T 2iub_A          304 KVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKK  360 (363)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3567788899999999999943    344332 23322 333334555666777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	355
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 1e-13
 Identities = 45/208 (21%), Positives = 68/208 (32%), Gaps = 45/208 (21%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           A+    L I KNL++       ++    TP+H AA  G+      LL+      N   KD
Sbjct: 7   ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKD 65

Query: 56  RKMTALHLAAGKGDARIVEAIISKNPE--------------------------------C 83
              T LH AA  G   +V+ ++  N                                   
Sbjct: 66  -DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 124

Query: 84  YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEF 143
              +  +G+  LH A    +V     LLE +    +  N     G TPLH +A    N  
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERD----AHPNAAGKNGLTPLH-VAVHHNNLD 179

Query: 144 DVDLVRKTQANYDAVNKQIVSVRHIFNY 171
            V L+     +  +      +  HI   
Sbjct: 180 IVKLLLPRGGSPHSPAWNGYTPLHIAAK 207

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 2e-12
 Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 13/165 (7%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
               ++ G TP+H  A  G+    ++L++        A      T LH+A+  G+ ++V+
Sbjct: 257 GNLGNKSGLTPLHLVAQEGHVPVADVLIK--HGVMVDATTRMGYTPLHVASHYGNIKLVK 314

Query: 75  AIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHV 134
             + ++          G++ LH A      + +T LL+N     +  NE  + G TPL  
Sbjct: 315 -FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG----ASPNEVSSDGTTPLA- 368

Query: 135 LAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEE 179
           +A         D+++        V      V       +PE  +E
Sbjct: 369 IAKRLGYISVTDVLKVVTDETSFVL-----VSDKHRMSFPETVDE 408

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 2e-12
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 24  TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC 83
           TP+H A++ G+   V  LL+   S  N+++     T LH+AA  G   + + ++    + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP-NVSNVK-VETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 84  YELVDNRGWNFLHYAVVSFRVEKLTNLLENNP 115
                      LH A        +  LLENN 
Sbjct: 60  -NAKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 2e-10
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 58  MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLA 117
           +T LH+A+  G   IV+ ++ +      + + +    LH A  +   E    LL+N    
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNK--- 56

Query: 118 RSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRK 150
            + +N       TPLH  A I        L+  
Sbjct: 57  -AKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 88

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 7e-09
 Identities = 49/229 (21%), Positives = 82/229 (35%), Gaps = 40/229 (17%)

Query: 2   AALSKLLEIKKNL------IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           A     L+I K L             G+TP+H AA          LL+     S  A+  
Sbjct: 172 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG--SANAESV 229

Query: 56  RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN-- 113
           + +T LHLAA +G A +V  ++        L +  G   LH       V     L+++  
Sbjct: 230 QGVTPLHLAAQEGHAEMVA-LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 288

Query: 114 ----------NPL-----------------ARSLINEGDAKGNTPLHVLAAIRPNEFDVD 146
                      PL                  ++ +N     G +PLH  AA + +   V 
Sbjct: 289 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH-QAAQQGHTDIVT 347

Query: 147 LVRKTQANYDAVNKQIVSVRHI-FNYGYPELKEEIQKLSKDVGRGQYSD 194
           L+ K  A+ + V+    +   I    GY  + + ++ ++ +      SD
Sbjct: 348 LLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD 55
           AA     +I   L+K      E    G TP+  A   G     ++L       S +   D
Sbjct: 337 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

Query: 56  RK 57
           + 
Sbjct: 397 KH 398

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 4e-12
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 8/144 (5%)

Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDAR---IVEA 75
            + G T +  AA  G+   + +LL+   +  N  D   +   +H      D+    I   
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 76  IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL 135
           ++    +   +   RG   L  AV    +  +  LLE   +    IN+ D+ G T L  L
Sbjct: 205 LLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALL-L 259

Query: 136 AAIRPNEFDVDLVRKTQANYDAVN 159
           A     +   +L+ K  A+ D  +
Sbjct: 260 AVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 7e-09
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 8/151 (5%)

Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLE--------TDQSASNIADKDRKMTALHLAAGKGDA 70
           D YG+T    AA YG    +  L +                  +    TAL  AA KG  
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 71  RIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNT 130
            +++ ++ +        DN G N L +A++S     +  +        + +N    +G T
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221

Query: 131 PLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ 161
           PL +    +       L+ +     +  +  
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIEINDTDSD 252

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 3e-08
 Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 9/165 (5%)

Query: 24  TPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEAIISKNPE 82
             +  A    +   V  LLE    A+ N  +++   T LH A       IVE ++    +
Sbjct: 7   HLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 83  CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNE 142
                 N    FL  A+            +      + +NE D  G T     AA+    
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLL-----KLFLSKGADVNECDFYGFTAFME-AAVYGKV 118

Query: 143 FDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDV 187
             +  + K  AN +   K       +   G   L +  +K   +V
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 11/162 (6%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 65
           +LLE   N+  + ++ GWTP+H A        V LLL                    LAA
Sbjct: 23  QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF--LLAA 80

Query: 66  GKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNP------LARS 119
             G  ++++  +SK  +  E  D  G+     A V  +V+ L  L +           + 
Sbjct: 81  IAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139

Query: 120 LINEGDAKGNTPLHVLAAIRPNEFDVD-LVRKTQANYDAVNK 160
                   G T L   AA + +   +  L+ +  A+ +A + 
Sbjct: 140 DQERLRKGGATALM-DAAEKGHVEVLKILLDEMGADVNACDN 180

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLE 43
           +LLE +   I +TD  G T +  A          LL +
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 1e-10
 Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 8/202 (3%)

Query: 19  DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVEAII 77
            + G T +H A  + +   ++ LL        +  ++    TALHLAA  G+A  VE + 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 78  SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEG------DAKGNTP 131
           +         +  G   LH A           LL+  P      ++       D   +T 
Sbjct: 66  AAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 132 LHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQ 191
               A       + +   + +     +  +        +        E+ +L +D G   
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184

Query: 192 YSDGVICIRESEDRAVQKYVTE 213
                 C R     AV+     
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAAS 206

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 22/131 (16%), Positives = 32/131 (24%), Gaps = 11/131 (8%)

Query: 12  KNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDAR 71
              +   +  G T +H AA  G   TV  L                    HLA       
Sbjct: 35  HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL--HLACRVRAHT 92

Query: 72  IVEAIISKNPECYE---------LVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLIN 122
               ++   P               D         A V  +          +   R  + 
Sbjct: 93  CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE 152

Query: 123 EGDAKGNTPLH 133
             +  G+TPLH
Sbjct: 153 AENYDGHTPLH 163

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 3/95 (3%)

Query: 87  VDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVD 146
           V   G   LH AV+      L  LL  +      ++  +  G T LH LAAI      V+
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSA-GHEYLDLQNDLGQTALH-LAAILGEASTVE 62

Query: 147 LVRKTQANYDAVNKQIVSVRHI-FNYGYPELKEEI 180
            +    A      +   +  H+            +
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 9e-05
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 4/61 (6%)

Query: 20  QYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVEAIIS 78
             G TP+H A        + LLL+    A           T L  A  + +  +   + +
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLK--AGADPTARMYG-GRTPLGSALLRPNPILARLLRA 246

Query: 79  K 79
            
Sbjct: 247 H 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 7/29 (24%), Positives = 8/29 (27%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLE 43
                  G TP+  A    N     LL  
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRA 246

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.9 bits (141), Expect = 2e-10
 Identities = 33/202 (16%), Positives = 61/202 (30%), Gaps = 49/202 (24%)

Query: 7   LLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLE----------------------- 43
               + NL    D++G TP+H+     N   V  L++                       
Sbjct: 92  FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 151

Query: 44  -----------TDQSASNIADKDRKM-TALHLAAGKGDAR------------IVEAIISK 79
                       D     +  +D    T LH                     ++  I+ K
Sbjct: 152 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 211

Query: 80  NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIR 139
                +   N   +  +      R + +   L+   +  +++N  D+ G+T L+ +AA  
Sbjct: 212 QNRPIQSGTNEKESKPNDKNGE-RKDSILENLDLKWIIANMLNAQDSNGDTCLN-IAARL 269

Query: 140 PNEFDVDLVRKTQANYDAVNKQ 161
            N   VD +    A+    NK 
Sbjct: 270 GNISIVDALLDYGADPFIANKS 291

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.1 bits (139), Expect = 3e-10
 Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 1   DAALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MT 59
           D  +  +++ +   I+       +  +          +  L      A+ +  +D    T
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

Query: 60  ALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAV 99
            L++AA  G+  IV+A++    +   + +  G   + +  
Sbjct: 262 CLNIAARLGNISIVDALLDYGADP-FIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (128), Expect = 7e-09
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 2   AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTA 60
                L  I  N++   D  G T ++ AA  GN   V+ LL+    A   IA+K   +  
Sbjct: 239 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD--YGADPFIANKS-GLRP 295

Query: 61  LHLAAG 66
           +   AG
Sbjct: 296 VDFGAG 301

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 18/139 (12%), Positives = 40/139 (28%), Gaps = 17/139 (12%)

Query: 8   LEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNL-----------LLETDQSASNIADKDR 56
           L+     +   D    T +H+          +             +   Q+    +  + 
Sbjct: 163 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE 222

Query: 57  KMTALHLAAGKGDARIVEAIISKN--PECYELVDNRGWNFLHYAVVSFRVEKLTNLLENN 114
           K +  +   G+    I+E +  K          D+ G   L+ A     +  +  LL+  
Sbjct: 223 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 282

Query: 115 PLARSLINEGDAKGNTPLH 133
               +     +  G  P+ 
Sbjct: 283 ----ADPFIANKSGLRPVD 297

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 3e-10
 Identities = 39/174 (22%), Positives = 60/174 (34%), Gaps = 7/174 (4%)

Query: 3   ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALH 62
            L + +   K+L   TDQ   T +H+A   G+   V                D   + LH
Sbjct: 18  ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVE--FLLQLGVPVNDKDDAGWSPLH 75

Query: 63  LAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLIN 122
           +AA  G   IV+A++ K       V+  G   LHYA    R E    LLE      +  +
Sbjct: 76  IAASAGRDEIVKALLGKGA-QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG----ANPD 130

Query: 123 EGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPEL 176
             D    T +H  AA    +    L+    +      +    +    +    E 
Sbjct: 131 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE 184

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 1e-09
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
           +   +Q G TP+HYAA    +    +LLE   +  +  D   + TA+H AA KG+ +++ 
Sbjct: 96  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHY-EATAMHRAAAKGNLKMIH 153

Query: 75  AIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHV 134
            I+        + D  G   LH A    RVE+   L+       + I   + +  TPL V
Sbjct: 154 -ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG----ASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 26  IHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYE 85
           +   AY G    +   +  D+S +   D+D + TALH A   G   IVE ++       +
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 86  LVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDV 145
             D+ GW+ LH A  + R E +  LL         +N  +  G TPLH  A+   +E  V
Sbjct: 66  -KDDAGWSPLHIAASAGRDEIVKALLGKGA----QVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 146 DLVRKTQANYDAVNKQIVSVRHIFNY 171
            L+    AN DA +    +  H    
Sbjct: 121 MLLEG-GANPDAKDHYEATAMHRAAA 145

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 8   LEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGK 67
           L   K      D  G TP+H A          LL+    S   I +K+ K T L +A G 
Sbjct: 155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEK-TPLQVAKG- 211

Query: 68  GDARIVEAII 77
           G   I++ ++
Sbjct: 212 GLGLILKRMV 221

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.1 bits (131), Expect = 2e-09
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIVE 74
            D+ G TPI  AA  G    V  L++  Q AS    D     TA  LA       IV+
Sbjct: 217 QDEDGKTPIMLAAQEGRIEVVMYLIQ--QGASVEAVDATDH-TARQLAQANNHHNIVD 271

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
                  G T +HYAA   N   V  L+    S  +  D+D   T + LAA +G   +V 
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED-GKTPIMLAAQEGRIEVVM 238

Query: 75  AIISKNPECYELVDNRGWNFLHYAV 99
            +I +     E VD         A 
Sbjct: 239 YLIQQGASV-EAVDATDHTARQLAQ 262

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 9e-07
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 9/89 (10%)

Query: 24  TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC 83
           +PI           +   +   + + NI D     T LH  A    A   E +I    + 
Sbjct: 2   SPIKLHTEAAGSYAITEPI--TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 84  Y-------ELVDNRGWNFLHYAVVSFRVE 105
                     +D      L  AV++ R  
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.1 bits (105), Expect = 5e-06
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 58  MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLA 117
            TALH AA   +  IV+ ++ +     +  D  G   +  A    R+E +  L++     
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG--- 244

Query: 118 RSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQ 152
            + +   DA  +T    LA    +   VD+  + +
Sbjct: 245 -ASVEAVDATDHTARQ-LAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 59  TALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPL-- 116
             LH  A  G   I E I  ++    +         LH+   +   EK  +L+ +     
Sbjct: 4   IKLHTEAA-GSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 117 --ARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYP 174
             A + +N  D   NTPL +    R       L++           +  ++         
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 120

Query: 175 ELKEEI 180
            +   +
Sbjct: 121 GMMVYM 126

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 6/48 (12%)

Query: 2   AALSKLLEIKKNLIK------ETDQYGWTPIHYAAYYGNYGTVNLLLE 43
           AA    +E+   LI+        D    T    A    ++  V++   
Sbjct: 228 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 11/72 (15%)

Query: 2  AALSKLLEIKKNLIKE-----TDQYGWTPIHYAAYYGNYGTVNLLLETDQSA--SNIADK 54
             +    I + + +E       ++  T +H+ A   +      L+  +     +  AD 
Sbjct: 8  TEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 67

Query: 55 DRK----MTALH 62
          +       T L 
Sbjct: 68 NAMDCDENTPLM 79

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.5 bits (130), Expect = 6e-09
 Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 3/113 (2%)

Query: 5   SKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHL 63
               ++  +  K+           AA  G    ++ L     S   +     +   A  L
Sbjct: 74  RNAKQLWSDAHKK-GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL 132

Query: 64  AAGKGDARIVEAIISKNPEC-YELVDNRGWNFLHYAVVSFRVEKLTNLLENNP 115
           AA  G   ++  +    P     ++    ++    A  +  +  L  L E  P
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.0 bits (121), Expect = 9e-08
 Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 2/127 (1%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 65
            LL     ++K      +     AA  G+   +N L E   +      +     A  LAA
Sbjct: 110 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAA 169

Query: 66  GKGDARIVEAIISK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINE 123
             G   ++  +           +     + F   AV       +  LL+   +       
Sbjct: 170 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH 229

Query: 124 GDAKGNT 130
               G  
Sbjct: 230 EFEYGEK 236

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 9/80 (11%), Positives = 18/80 (22%), Gaps = 3/80 (3%)

Query: 2   AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLET---DQSASNIADKDRKM 58
           +    + ++          Y    +           +  LL        A          
Sbjct: 259 SNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN 318

Query: 59  TALHLAAGKGDARIVEAIIS 78
             L LA   G+      ++S
Sbjct: 319 ELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 15/136 (11%), Positives = 29/136 (21%), Gaps = 16/136 (11%)

Query: 8   LEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGK 67
             +   L+ +          +   YG       +        ++        A  L+   
Sbjct: 210 HNVINFLL-DCPVMLAYAEIHEFEYGEKYVNPFIAR------HVNRLKEMHDAFKLSNPD 262

Query: 68  GDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSL-INEGDA 126
           G   +V                     L        ++ +  LL    +           
Sbjct: 263 GVFDLVTKSECLQ-------GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG 315

Query: 127 KGNTPLHVLAAIRPNE 142
             N  L  LA    N+
Sbjct: 316 DANELLR-LALRLGNQ 330

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 8/98 (8%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
                + G T +H AA  G    + LL                 T LH AA  G      
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLL--IQARYDVNIKDYDGWTPLHAAAHWGKEEACR 249

Query: 75  AIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
            ++    +  E V+  G      A      E +   LE
Sbjct: 250 ILVENLCD-MEAVNKVGQTAFDVA-----DEDILGYLE 281

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGKGDARIV 73
           +   D  GWTP+H AA++G      +L+E          +K  + TA  +A       + 
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVE--NLCDMEAVNKVGQ-TAFDVADEDILGYLE 281

Query: 74  EAIISKN 80
           E    +N
Sbjct: 282 ELQKKQN 288

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 8e-08
 Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC 83
           P+H A     +  V  LL +  S     D+D     LH +       I   ++SK    
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQD-GRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 84 YELVDNRGWNFLHY 97
                    +  +
Sbjct: 61 NLDDYPDDSGWTPF 74

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 3e-06
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
           +   D+ GWTP+ +A   G+     LL+E   +  ++ D      A  +A    + ++ +
Sbjct: 165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA-KAEDVAL---NEQVKK 220

Query: 75  AIISK 79
             ++ 
Sbjct: 221 FFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 8e-06
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 59 TALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAV 99
            LH A  + +   V+ ++   P      D  G   LH++V
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV 42

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 7   LLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAG 66
            L      ++  D++   P+H AA  G+   + LL    +SA N  DK +  T L  A  
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALA 181

Query: 67  KGDARIVEAIISKNPECYELVDNRGWNFLHYAV 99
           +G       ++ K    Y+LVDN+G      A+
Sbjct: 182 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 3  ALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNY 35
           + +LL  K +L+ + DQ G  P+H++  +  +
Sbjct: 15 KVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 93  NF-LHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEF 143
           N+ LH A +     K+  LL + P   SL+ + D  G  PLH  +       
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKP---SLLLQKDQDGRIPLH-WSVSFQAHE 48

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 58  MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLA 117
              LH AA  G  +++E +           D +GW  L +A+     +    L+E     
Sbjct: 139 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK---Y 195

Query: 118 RSLINEGDAKGNTPLHV 134
            +  +  D KG     V
Sbjct: 196 GAEYDLVDNKGAKAEDV 212

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 22 GWTPIHYAAYYGNYGTVNLLLETDQSAS---NIADKDRKMTALHLA 64
          G TP+H A   GN   V+ L+   Q      +I +   + T LHLA
Sbjct: 3  GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 6   KLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 65
           +LL      +      G + +H A+  G    V  L+ +   + ++ +     T L +A 
Sbjct: 161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHND-TPLMVAR 218

Query: 66  GKGDARIV 73
            +    I+
Sbjct: 219 SRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 58 MTALHLAAGKGDARIVEAIISKNPEC---YELVDNRGWNFLHYA 98
           T LH+A  +G+   V  +++   +     ++ +N     LH A
Sbjct: 4  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 10/130 (7%)

Query: 20  QYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK 79
             G T +H A       TV LLLE       +  K  +   L  A       +V+ ++  
Sbjct: 108 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSP-LIHAVENNSLSMVQLLLQH 166

Query: 80  NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIR 139
                  + + G + LH A     +  +  L+ +     +  +  +   +TPL  +A  R
Sbjct: 167 GANVNAQMYS-GSSALHSASGRGLLPLVRTLVRSG----ADSSLKNCHNDTPLM-VARSR 220

Query: 140 PNEFDVDLVR 149
                +D++R
Sbjct: 221 RV---IDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 14/85 (16%), Positives = 24/85 (28%)

Query: 91  GWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRK 150
           G   LH AVV   +  +  L+         ++  +    TPLH+            LV  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 151 TQANYDAVNKQIVSVRHIFNYGYPE 175
             +          +      +  P 
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPT 87

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 10/124 (8%)

Query: 11  KKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA 70
           +K  +    +   T +H A    +  +++++    Q++ N+  +  K +         D 
Sbjct: 34  EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 93

Query: 71  RIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNT 130
                ++ +     E+ +  G   L  A                     L      + N+
Sbjct: 94  AECLKLLLRGKASIEIANESGETPLDIAKRLKHEH----------CEELLTQALSGRFNS 143

Query: 131 PLHV 134
            +HV
Sbjct: 144 HVHV 147

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 9e-06
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 20  QYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK 79
             G T +H A    N   V+LLL+      N        +   L  G+   RI + +   
Sbjct: 143 CNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQ-GYSPYQLTWGRPSTRIQQQLGQL 200

Query: 80  NPECYELVDN 89
             E  +++  
Sbjct: 201 TLENLQMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 8e-05
 Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 4/46 (8%)

Query: 22 GWTPIHYAAYYGNYGTVNLLLETDQSAS---NIADKDRKMTALHLA 64
          G + +H A  +        ++   +      N  +   + T LHLA
Sbjct: 2  GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 91  GWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLH 133
           G +FLH A++         ++       + +N  +    TPLH
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLH 44

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 58 MTALHLAAGKGDARIVEAIISKNPECYELV---DNRGWNFLHYA 98
           + LHLA    +  +   +I +       +   +N     LH A
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 3/26 (11%), Positives = 7/26 (26%)

Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLE 43
               G++P        +      L +
Sbjct: 174 VTYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 27/131 (20%), Positives = 40/131 (30%), Gaps = 8/131 (6%)

Query: 4   LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHL 63
           +S LL     L    D+ G T +H AA +        LL+    A++  +  R      +
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 64  AAGKGDARIVEAIISKNPECYELVDNR-GWNFLHYAVVSFRVEKLTNLLENNPLARSLIN 122
           AA       +            + D            +   VE L     +       IN
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-------IN 117

Query: 123 EGDAKGNTPLH 133
             D  G T LH
Sbjct: 118 AADNSGKTALH 128

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLL 41
            + TD     P   A+   ++  V LL
Sbjct: 182 REITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 18  TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
            D    TP+  AA  G+Y     LL+   +   I D         +A+ +    IV 
Sbjct: 152 QDDKDETPLFLAAREGSYEASKALLDNFANR-EITDHM-DRLPRDVASERLHHDIVR 206

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 3e-05
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLE 43
           +   D  G TP+  A   G    V++L  
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 6e-05
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLLLE 43
           +   +  G T    A  YG    V+L+  
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (86), Expect = 5e-04
 Identities = 4/27 (14%), Positives = 9/27 (33%)

Query: 15  IKETDQYGWTPIHYAAYYGNYGTVNLL 41
           +    ++  T    +   GN     +L
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.002
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 20  QYGWTPIHYAAYYGNYGTVNLLLE 43
            +G  P+  A   G+      L  
Sbjct: 100 AWGRLPVDLAEELGHRDVARYLRA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.91
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.91
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.9
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.86
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.8
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.77

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.2e-30  Score=220.37  Aligned_cols=181  Identities=26%  Similarity=0.271  Sum_probs=152.6

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++++|+.++..++.+|.+|+||||+||..|+.+++++|++.+... ...+. .+.++++.++..|+.+++++|++.++
T Consensus        17 ~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~i~~~Ll~~~~   94 (223)
T d1uoha_          17 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDD-AGWSPLHIAASAGRDEIVKALLGKGA   94 (223)
T ss_dssp             HHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccc-cccccccccccccccchhHHHhccCc
Confidence            67899999999999999999999999999999999999999987766 44444 67888888888888888888888888


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCC
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ  161 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~  161 (355)
                      ++ +.+|.+|+||||+|+.+++.++++.|++    .|.+++.+|.+|.||||+|+..++ ..+.++|.+.+.+++.+|.+
T Consensus        95 d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~----~g~d~~~~~~~~~t~L~~a~~~~~-~~~~~~L~~~~~~i~~~d~~  168 (223)
T d1uoha_          95 QV-NAVNQNGCTPLHYAASKNRHEIAVMLLE----GGANPDAKDHYEATAMHRAAAKGN-LKMIHILLYYKASTNIQDTE  168 (223)
T ss_dssp             CT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTCCSCCCCTT
T ss_pred             ee-EeeCCCCCchhhHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCccchhhhhcCC-cchhhhhccccceeeeccCC
Confidence            77 7788888888888888888888888887    677888888888888888888885 77788888888888888888


Q ss_pred             CCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          162 IVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      |+|||++|+...   ..+++++|.+.|.++..
T Consensus       169 g~TpL~~Aa~~g---~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         169 GNTPLHLACDEE---RVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             CCCHHHHHHHTT---CHHHHHHHHHTTCCSCC
T ss_pred             CCceeccccccC---cHHHHHHHHHCCCCCCC
Confidence            888888888655   45677888887776653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.7e-29  Score=220.32  Aligned_cols=179  Identities=23%  Similarity=0.227  Sum_probs=152.3

Q ss_pred             hHHHHHHHhc--cccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhh
Q 042924            2 AALSKLLEIK--KNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK   79 (355)
Q Consensus         2 ~~v~~lL~~~--~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~   79 (355)
                      +.++.|++.+  +..++.+|.+|.||||+||..|+.++++.|+++|+++ +.++. +|.||||+|+..|+.++++.|++.
T Consensus        23 ~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~-~g~tpL~~A~~~~~~~~~~~Ll~~  100 (255)
T d1oy3d_          23 PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAER-GGHTALHLACRVRAHTCACVLLQP  100 (255)
T ss_dssp             HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCT-TSCCHHHHHTTTTCHHHHHHHSSS
T ss_pred             HHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-ccccc-ccchhhhhhhccCchHHHHHHHhh
Confidence            3566666653  3457889999999999999999999999999999988 78887 999999999999999999999764


Q ss_pred             CCcc----------------------------------------------ccccccCCchHHHHHHhcCChhHHHHHHhc
Q 042924           80 NPEC----------------------------------------------YELVDNRGWNFLHYAVVSFRVEKLTNLLEN  113 (355)
Q Consensus        80 ~~~~----------------------------------------------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~  113 (355)
                      ....                                              .+.+|.+|+||||+|+++++.++++.|++ 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~-  179 (255)
T d1oy3d_         101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-  179 (255)
T ss_dssp             CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             ccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhc-
Confidence            3210                                              13367789999999999999999999999 


Q ss_pred             Chhhhhhhcc-CCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCC
Q 042924          114 NPLARSLINE-GDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRG  190 (355)
Q Consensus       114 ~~~~~~~~n~-~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~  190 (355)
                         .+...+. ++..|+||||+|++.++ .+++++|+++|++++.+|.+|+||||+|....   ..+++++|.+.|++
T Consensus       180 ---~~~~~~~~~~~~g~TpL~~A~~~~~-~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~---~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         180 ---AGADLNKPEPTCGRTPLHLAVEAQA-ASVLELLLKAGADPTARMYGGRTPLGSALLRP---NPILARLLRAHGAP  250 (255)
T ss_dssp             ---HTCCTTCCCTTTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS---CHHHHHHHHHTTCC
T ss_pred             ---ccccccccccccccccccccccccH-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC---CHHHHHHHHHcCCC
Confidence               5555554 46789999999999995 89999999999999999999999999999766   56889999998885

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.1e-29  Score=212.21  Aligned_cols=177  Identities=21%  Similarity=0.224  Sum_probs=132.4

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcc--cccccCCCchHHHHHHh-------------
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS--NIADKDRKMTALHLAAG-------------   66 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~--~~~~~~~g~tpLh~Aa~-------------   66 (355)
                      +.+++||+.++.+++.+|.+|+||||+|+..|+.+++++|+++|+++.  ...+. .|.+|+|+++.             
T Consensus        14 ~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   92 (229)
T d1ixva_          14 FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD-SGWTPFHIACSVGNLEVVKSLYDR   92 (229)
T ss_dssp             HHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHSS
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccc-cccccccccccccccccccccccc
Confidence            578899999999999999999999999999999999999999887652  12232 56666666555             


Q ss_pred             ----------------------cCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccC
Q 042924           67 ----------------------KGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEG  124 (355)
Q Consensus        67 ----------------------~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~  124 (355)
                                            .++.++++.|++.+.+. ...|.+|+||||+|+..|+.++++.|++..   +.++|.+
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~---~~~in~~  168 (229)
T d1ixva_          93 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLG---KSAVNWQ  168 (229)
T ss_dssp             SSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTT---CCCSCCC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhcccccccccccccc---ccccccc
Confidence                                  45555555555555555 556777888888888888888888887732   2467778


Q ss_pred             CCCCCcHHHHHHhcCCchHHHHHHhc-cCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCC
Q 042924          125 DAKGNTPLHVLAAIRPNEFDVDLVRK-TQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRG  190 (355)
Q Consensus       125 d~~G~T~Lh~A~~~~~~~~~~~lL~~-~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~  190 (355)
                      |.+|+||||+|+..|+ .+++++|++ .|+|++.+|++|+||+|+|.+      .+++++|.+.|.+
T Consensus       169 d~~g~TpLh~A~~~~~-~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~------~~~~~~Ll~~g~d  228 (229)
T d1ixva_         169 DKQGWTPLFHALAEGH-GDAAVLLVEKYGAEYDLVDNKGAKAEDVALN------EQVKKFFLNNVVD  228 (229)
T ss_dssp             CTTSCCHHHHHHHTTC-HHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC------HHHHHHHHHHCCC
T ss_pred             ccccCCchhhhccccc-HHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh------HHHHHHHHHcCCC
Confidence            8888888888888875 777777764 578888888888888887762      3566777776653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.7e-28  Score=207.51  Aligned_cols=171  Identities=23%  Similarity=0.263  Sum_probs=153.2

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcc
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC   83 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~   83 (355)
                      +.+++...+......+..+.++++.++..|+.++++.|++++.++ +.++. .|.||||+|+..|+.+++++|++.|.++
T Consensus        52 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~-~g~tpL~~A~~~~~~e~~~~Ll~~g~d~  129 (223)
T d1uoha_          52 IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANP  129 (223)
T ss_dssp             HHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             ccccccccccccccccccccccccccccccccchhHHHhccCcee-EeeCC-CCCchhhHHHHcCCHHHHHHHHHCCCCC
Confidence            334455556667788889999999999999999999999999887 88887 9999999999999999999999999988


Q ss_pred             ccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCC
Q 042924           84 YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIV  163 (355)
Q Consensus        84 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~  163 (355)
                       +.+|..|.||||+|+..++.++++.|..    .+.++|.+|.+|+||||+|+..|+ .+++++|++.|+|++.+|.+|+
T Consensus       130 -~~~~~~~~t~L~~a~~~~~~~~~~~L~~----~~~~i~~~d~~g~TpL~~Aa~~g~-~~~v~~LL~~Gad~~~~d~~g~  203 (223)
T d1uoha_         130 -DAKDHYEATAMHRAAAKGNLKMIHILLY----YKASTNIQDTEGNTPLHLACDEER-VEEAKLLVSQGASIYIENKEEK  203 (223)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTCCCHHHHHHHTTC-HHHHHHHHHTTCCSCCCCTTSC
T ss_pred             -CCcCCCCCccchhhhhcCCcchhhhhcc----ccceeeeccCCCCceeccccccCc-HHHHHHHHHCCCCCCCCCCCCC
Confidence             8889999999999999999999999988    678999999999999999999996 8999999999999999999999


Q ss_pred             cHHHHHhhCCCchHHHHHHHHHH
Q 042924          164 SVRHIFNYGYPELKEEIQKLSKD  186 (355)
Q Consensus       164 Tpl~~a~~~~~~~~~~i~~~l~~  186 (355)
                      ||+|+|..+    ..++++.|.+
T Consensus       204 tpl~~A~~~----~~~i~~~Ll~  222 (223)
T d1uoha_         204 TPLQVAKGG----LGLILKRMVE  222 (223)
T ss_dssp             CHHHHCCTT----HHHHHHHHHC
T ss_pred             CHHHHHHCC----CHHHHhcccC
Confidence            999998543    5567666653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.5e-27  Score=207.84  Aligned_cols=172  Identities=22%  Similarity=0.201  Sum_probs=147.2

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHhhccCCCc--ccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCch
Q 042924           16 KETDQYGWTPIHYAAYYGNYGTVNLLLETDQSA--SNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWN   93 (355)
Q Consensus        16 ~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t   93 (355)
                      +..|++|.||||+||+.|+.+++++|++++++.  .+.++. .|.||||+|+..|+.+++++|++.|+++ +..|.+|+|
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~-~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~t   80 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT   80 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCC-CCCCccchHHhhcccccccccccccccc-cccccccch
Confidence            456899999999999999999999999988764  245555 8999999999999999999999999998 889999999


Q ss_pred             HHHHHHhcCChhHHHHHHhcCh-------------------------------------------hhhhhhccCCCCCCc
Q 042924           94 FLHYAVVSFRVEKLTNLLENNP-------------------------------------------LARSLINEGDAKGNT  130 (355)
Q Consensus        94 ~Lh~A~~~~~~~~~~~Ll~~~~-------------------------------------------~~~~~~n~~d~~G~T  130 (355)
                      |||+|+..++.++++.|++...                                           ..+..++.+|.+|+|
T Consensus        81 pL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~T  160 (255)
T d1oy3d_          81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (255)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             hhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcc
Confidence            9999999999999988864210                                           023457788999999


Q ss_pred             HHHHHHhcCCchHHHHHHhccCcccccc-cCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          131 PLHVLAAIRPNEFDVDLVRKTQANYDAV-NKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       131 ~Lh~A~~~~~~~~~~~lL~~~ga~~~~~-n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      |||+|+..++ .+++++|++.+++.+.. +..|.||||+|+...   ..+++++|.+.|.++..
T Consensus       161 pLh~A~~~~~-~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~---~~~~v~~Ll~~gadin~  220 (255)
T d1oy3d_         161 PLHVAVIHKD-AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ---AASVLELLLKAGADPTA  220 (255)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT---CHHHHHHHHHTTCCTTC
T ss_pred             cccccccccc-cccccchhccccccccccccccccccccccccc---HHHHHHHHHHCCCCCCC
Confidence            9999999995 89999999999998864 678999999999765   46788899998877643

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.8e-28  Score=205.05  Aligned_cols=171  Identities=20%  Similarity=0.176  Sum_probs=146.6

Q ss_pred             HHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcc----
Q 042924            8 LEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC----   83 (355)
Q Consensus         8 L~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~----   83 (355)
                      +...+.++|.+|.+|+||||+||..|+.+++++|++.|+++ +.++. .|.||||.|+..|+.++++.|++.+...    
T Consensus        25 ~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~-~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~  102 (221)
T d1iknd_          25 VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDF-RGNTPLHLACEQGCLASVGVLTQSCTTPHLHS  102 (221)
T ss_dssp             ----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCT-TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSC
T ss_pred             HHhCCCCcccCCCCCCccccccccccccccccccccccccc-ccccc-ccccccccccccccccccchhhhhcccccccc
Confidence            34467779999999999999999999999999999999998 88887 9999999999999999999999875442    


Q ss_pred             -ccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCC-CCCCcHHHHHHhcCCchHHHHHHhccCcccccccCC
Q 042924           84 -YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGD-AKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ  161 (355)
Q Consensus        84 -~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~  161 (355)
                       .......|.||||.|+..++.+.++.++.    .+..++.++ .+|+||||+|++.|+ .+++++|+++|+|++.+|.+
T Consensus       103 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~----~~~~~~~~~~~~G~T~L~~A~~~g~-~~~v~~Ll~~gad~~~~~~~  177 (221)
T d1iknd_         103 ILKATNYNGHTCLHLASIHGYLGIVELLVS----LGADVNAQEPCNGRTALHLAVDLQN-PDLVSLLLKCGADVNRVTYQ  177 (221)
T ss_dssp             GGGCCCTTCCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTC-HHHHHHHHTTTCCSCCCCTT
T ss_pred             cccccccccchhhhHHhhcCChhheeeecc----cCcccccccccCCCCcccccccccc-HHHHHHHHhcCCcccccCCC
Confidence             24445678999999999999999999998    666777665 679999999999996 89999999999999999999


Q ss_pred             CCcHHHHHhhCCCchHHHHHHHHHHcC
Q 042924          162 IVSVRHIFNYGYPELKEEIQKLSKDVG  188 (355)
Q Consensus       162 g~Tpl~~a~~~~~~~~~~i~~~l~~~~  188 (355)
                      |+||+|+|+...   ..++.+.+.+..
T Consensus       178 G~tpl~~A~~~~---~~~~~~~l~~~~  201 (221)
T d1iknd_         178 GYSPYQLTWGRP---STRIQQQLGQLT  201 (221)
T ss_dssp             CCCGGGGCTTSS---CHHHHHHHHTTS
T ss_pred             CCCHHHHHHHCC---CHHHHHHHHHcC
Confidence            999999998665   456666666643

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.3e-27  Score=201.97  Aligned_cols=171  Identities=24%  Similarity=0.270  Sum_probs=144.6

Q ss_pred             hHHHHHHHhccccccc-cCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCH----------
Q 042924            2 AALSKLLEIKKNLIKE-TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA----------   70 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~-~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~----------   70 (355)
                      |+|+.|+++ +.++|. .|++|.||||+||+.|+.+++++|++.++++ +.++. .+.++++.++..++.          
T Consensus         3 ~~v~~Ll~~-g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           3 QVISDLLAQ-GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDN-TGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHC-CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccc-ccccccccccccccccccccccccc
Confidence            455666665 455776 5999999999999999999999999999887 77776 788888877764443          


Q ss_pred             ------------------------HHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCC
Q 042924           71 ------------------------RIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDA  126 (355)
Q Consensus        71 ------------------------~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~  126 (355)
                                              ...+.|...+.++ +.+|..|+||||.++.+++.+++..++.    .+.+++.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~----~~~~~~~~d~  154 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLM----HHANRDAQDD  154 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCT
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecc----cccccccccc
Confidence                                    4555566666665 7789999999999999999999999999    6678999999


Q ss_pred             CCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHH
Q 042924          127 KGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLS  184 (355)
Q Consensus       127 ~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l  184 (355)
                      +|+||||+|+..|+ .+++++|+++|+|++.+|.+|+||+|+|++..   ..+++++|
T Consensus       155 ~g~TpL~~A~~~g~-~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~---~~~iv~lL  208 (209)
T d1ot8a_         155 KDETPLFLAAREGS-YEASKALLDNFANREITDHMDRLPRDVASERL---HHDIVRLL  208 (209)
T ss_dssp             TCCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT---CHHHHHHH
T ss_pred             ccccccchhccccH-HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC---CHHHHhhc
Confidence            99999999999995 99999999999999999999999999999776   45677765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-26  Score=187.46  Aligned_cols=153  Identities=24%  Similarity=0.280  Sum_probs=139.5

Q ss_pred             hHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCC
Q 042924           24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFR  103 (355)
Q Consensus        24 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  103 (355)
                      +|||+||..|+.++++.|+++|+++ +.++. +|.||||+|+ .|+.+++++|++.++++ +.++.+|.++++.++.+++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~-~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNG-FGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCT-TSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCC-cccccccccc-ccccccccccccccccc-ccccccCcccccccccccc
Confidence            8999999999999999999999997 88887 9999999885 79999999999999998 8889999999999999999


Q ss_pred             hhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCc-ccccccCCCCcHHHHHhhCCCchHHHHHH
Q 042924          104 VEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQA-NYDAVNKQIVSVRHIFNYGYPELKEEIQK  182 (355)
Q Consensus       104 ~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga-~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~  182 (355)
                      .+.++.+++    .+..++..|..|.+|||+|+..++ .+++++|++++. +.+.+|.+|+||+|+|....   ..++++
T Consensus        79 ~~~~~~l~~----~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~---~~~iv~  150 (156)
T d1ihba_          79 LDTLQTLLE----FQADVNIEDNEGNLPLHLAAKEGH-LRVVEFLVKHTASNVGHRNHKGDTACDLARLYG---RNEVVS  150 (156)
T ss_dssp             HHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT---CHHHHH
T ss_pred             ccccccccc----cccccccccccccccccccccccc-ccccccccccccccccccCCCCCCHHHHHHHcC---CHHHHH
Confidence            999999998    667889999999999999999996 888888887775 89999999999999999765   456888


Q ss_pred             HHHHcC
Q 042924          183 LSKDVG  188 (355)
Q Consensus       183 ~l~~~~  188 (355)
                      +|.++|
T Consensus       151 ~Ll~~G  156 (156)
T d1ihba_         151 LMQANG  156 (156)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            888765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1e-26  Score=186.84  Aligned_cols=150  Identities=20%  Similarity=0.133  Sum_probs=136.4

Q ss_pred             ChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcC
Q 042924           23 WTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSF  102 (355)
Q Consensus        23 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  102 (355)
                      .||||.||+.|+.++++.||++|++. + .+. .|+||||+|+..++.++++.++...... ...+..+.+++|.++...
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~-~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCT-TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-ccc-CCCccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            49999999999999999999999875 3 565 8999999999999999999999888777 667888999999999999


Q ss_pred             ChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHH
Q 042924          103 RVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQK  182 (355)
Q Consensus       103 ~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~  182 (355)
                      +.+.++.+..    .+.+.+.+|.+|+||||+|+..|+ .+++++|++.|+|++.+|.+|+||+|+|+...   ..++++
T Consensus        79 ~~~~~~~l~~----~~~~~~~~~~~g~T~L~~A~~~g~-~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g---~~eiv~  150 (153)
T d1awcb_          79 HANIVEVLLK----HGADVNAKDMLKMTALHWATEHNH-QEVVELLIKYGADVHTQSKFCKTAFDISIDNG---NEDLAE  150 (153)
T ss_dssp             CHHHHHHHHT----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT---CHHHHH
T ss_pred             cceeeecccc----cCCccccccccCchHHHhhhhcch-hheeeeccccccCCcccCCCCCCHHHHHHHcC---CHHHHH
Confidence            9999999988    678899999999999999999996 89999999999999999999999999999765   456677


Q ss_pred             HH
Q 042924          183 LS  184 (355)
Q Consensus       183 ~l  184 (355)
                      +|
T Consensus       151 lL  152 (153)
T d1awcb_         151 IL  152 (153)
T ss_dssp             HH
T ss_pred             hC
Confidence            66

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=1e-26  Score=206.52  Aligned_cols=160  Identities=29%  Similarity=0.303  Sum_probs=112.2

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.|+.||+ +|.++|.+|.+|+||||+|+..|+.+++++|++++.+. ...+. .+.+|||.|+..|+.++++.|++.+.
T Consensus        54 ~~v~~Ll~-~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~-~~~~~L~~a~~~~~~~~~~~l~~~~~  130 (291)
T d1s70b_          54 EEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDN-EGWIPLHAAASCGYLDIAEYLISQGA  130 (291)
T ss_dssp             HHHHHHHH-HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-CCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccc-cccccccccccccccchhhcccccCc
Confidence            34566665 55668999999999999999999999999999988876 55565 78899999999999999999988765


Q ss_pred             ccccccc------------------------------------------------------------cCCchHHHHHHhc
Q 042924           82 ECYELVD------------------------------------------------------------NRGWNFLHYAVVS  101 (355)
Q Consensus        82 ~~~~~~d------------------------------------------------------------~~g~t~Lh~A~~~  101 (355)
                      .. +..|                                                            ..|.||||+|+..
T Consensus       131 ~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~  209 (291)
T d1s70b_         131 HV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK  209 (291)
T ss_dssp             CT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             cc-ccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHc
Confidence            44 3333                                                            3455566666666


Q ss_pred             CChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHh
Q 042924          102 FRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFN  170 (355)
Q Consensus       102 ~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~  170 (355)
                      |+.++++.|++    .|.++|.+|.+|+||||+|+..|+ .+++++|+++|+|++.+|++|+||+|+|.
T Consensus       210 ~~~~~~~~Ll~----~g~din~~~~~g~TpL~~A~~~g~-~~iv~lLl~~Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         210 GYTEVLKLLIQ----ARYDVNIKDYDGWTPLHAAAHWGK-EEACRILVENLCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             TCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             CChhhhccccc----ceecccccccCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            66666666665    455566666666666666666664 55566666666666666666666666654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=3.4e-26  Score=201.31  Aligned_cols=169  Identities=19%  Similarity=0.173  Sum_probs=144.7

Q ss_pred             HhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCc------
Q 042924            9 EIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE------   82 (355)
Q Consensus         9 ~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~------   82 (355)
                      ...|+++|.+|.+|+||||+|++.|+.+++++|+++|+++ +.++. +|.||||+|+..|+.++++.+......      
T Consensus        61 l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~-~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~  138 (277)
T d2fo1e1          61 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEE  138 (277)
T ss_dssp             HHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC
T ss_pred             HHcCCCccccCCCCCeeecccccccccccccccccccccc-ccccc-cccccccchhhhcchhhhhhhhhcccccccccc
Confidence            3467889999999999999999999999999999999997 88887 999999999999999888887653110      


Q ss_pred             ----------------------------------------cccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhc
Q 042924           83 ----------------------------------------CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLIN  122 (355)
Q Consensus        83 ----------------------------------------~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n  122 (355)
                                                              ..+..+..|+||||+++..++.++++.++..   .+.+.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~---~~~~~~  215 (277)
T d2fo1e1         139 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE---KGSNKD  215 (277)
T ss_dssp             CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH---SCCCTT
T ss_pred             cccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccc---cccccc
Confidence                                                    0122445789999999999999998876654   456888


Q ss_pred             cCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHH
Q 042924          123 EGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKD  186 (355)
Q Consensus       123 ~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~  186 (355)
                      .+|..|+||||+|++.|+ .+++++|+++|+|++.+|.+|+||||+|...+   ..+++++|.+
T Consensus       216 ~~d~~g~tpL~~A~~~g~-~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~---~~~iv~lL~~  275 (277)
T d2fo1e1         216 KQDEDGKTPIMLAAQEGR-IEVVMYLIQQGASVEAVDATDHTARQLAQANN---HHNIVDIFDR  275 (277)
T ss_dssp             CCCTTCCCHHHHHHHHTC-HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTT---CHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcCC-HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcC---CHHHHHHHHH
Confidence            999999999999999995 89999999999999999999999999999776   4577777764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.9e-27  Score=210.94  Aligned_cols=155  Identities=19%  Similarity=0.183  Sum_probs=119.6

Q ss_pred             cccccc-CCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCH---HHHHHHhhhCCccccccc
Q 042924           13 NLIKET-DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDA---RIVEAIISKNPECYELVD   88 (355)
Q Consensus        13 ~~~~~~-d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~---~~v~~Ll~~~~~~~~~~d   88 (355)
                      .++|.. |++|+||||+||..|+.++|+.|+++|+++ +.++. .|+||||.|+..++.   +.+..+++...+....+|
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~-~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d  174 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  174 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCc-ccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc
Confidence            355655 999999999999999999999999999988 78887 899999999987652   122233332223346789


Q ss_pred             cCCchHHHHHHhcCC----hhHHH--------HHHhcCh---------------------------------hhhhhhcc
Q 042924           89 NRGWNFLHYAVVSFR----VEKLT--------NLLENNP---------------------------------LARSLINE  123 (355)
Q Consensus        89 ~~g~t~Lh~A~~~~~----~~~~~--------~Ll~~~~---------------------------------~~~~~~n~  123 (355)
                      ..|+||||.++..+.    ....+        .+.+...                                 ..+..+|.
T Consensus       175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  254 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA  254 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred             cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccC
Confidence            999999998886543    22222        2222100                                 01223799


Q ss_pred             CCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHh
Q 042924          124 GDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFN  170 (355)
Q Consensus       124 ~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~  170 (355)
                      +|.+|+||||+|++.|+ .+++++|++.|+|++.+|++|+||+|+|+
T Consensus       255 ~D~~G~TpLh~A~~~g~-~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         255 QDSNGDTCLNIAARLGN-ISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTTSCCHHHHHHHHCC-HHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999996 99999999999999999999999999985

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5e-26  Score=183.65  Aligned_cols=151  Identities=16%  Similarity=0.177  Sum_probs=133.9

Q ss_pred             hHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCC
Q 042924           24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFR  103 (355)
Q Consensus        24 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  103 (355)
                      ++||.||..|+.++|+.|++.+....+..+. .|+||||+|+ .|+.+++++|++.+.++ +..+..|.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~-~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT-TSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCC-CCCccccccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            4599999999999999999875444488887 9999999886 58899999999999987 7789999999999999999


Q ss_pred             hhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHH
Q 042924          104 VEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKL  183 (355)
Q Consensus       104 ~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~  183 (355)
                      .++++.+++    .+.++|.+|.+|+||||+|++.|+ .+++++|. .|++++.+|.+|+||+|+|...+   ..+++++
T Consensus        81 ~~~~~~~l~----~~~~~n~~~~~~~t~L~~A~~~~~-~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g---~~~iv~~  151 (156)
T d1bd8a_          81 LDTLKVLVE----HGADVNVPDGTGALPIHLAVQEGH-TAVVSFLA-AESDLHRRDARGLTPLELALQRG---AQDLVDI  151 (156)
T ss_dssp             HHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHHTC-HHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSC---CHHHHHH
T ss_pred             ccccccccc----cccccccccCCCCeeecccccccc-cccccccc-ccccccccCCCCCCHHHHHHHcC---CHHHHHH
Confidence            999999999    678899999999999999999996 88888877 68999999999999999999766   4577888


Q ss_pred             HHH
Q 042924          184 SKD  186 (355)
Q Consensus       184 l~~  186 (355)
                      |.+
T Consensus       152 Ll~  154 (156)
T d1bd8a_         152 LQG  154 (156)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            775

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-26  Score=193.53  Aligned_cols=78  Identities=17%  Similarity=0.043  Sum_probs=57.5

Q ss_pred             cCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHH
Q 042924           89 NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI  168 (355)
Q Consensus        89 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~  168 (355)
                      ..|.++||.|+..+..++.+.+++    .+...+.+|.+|+||||+|+..|+ .+++++|+++|+|++.+|.+|+||||+
T Consensus       142 ~~~~~~l~~a~~~~~~~~~~~~~~----~~~~~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~Gad~n~~d~~G~TpL~~  216 (228)
T d1k1aa_         142 KSGRSPLIHAVENNSLSMVQLLLQ----HGANVNAQMYSGSSALHSASGRGL-LPLVRTLVRSGADSSLKNCHNDTPLMV  216 (228)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCTTTT
T ss_pred             cchhhHHHHHHHhhhhhhhhhhhh----hccccccccccCcchHHHHHHcCC-HHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            355666667776666666666666    556677777788888888888875 777788888888888888888888887


Q ss_pred             Hhh
Q 042924          169 FNY  171 (355)
Q Consensus       169 a~~  171 (355)
                      |.+
T Consensus       217 A~~  219 (228)
T d1k1aa_         217 ARS  219 (228)
T ss_dssp             CSS
T ss_pred             HHh
Confidence            764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-25  Score=180.57  Aligned_cols=140  Identities=21%  Similarity=0.265  Sum_probs=128.9

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.|++||.+++.+++.+|..|+||||+|+. |+.++++.|++.+.++ +..+. .|.+|++.++..++.++++.+++.++
T Consensus        16 ~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~~~~l~~~~   92 (156)
T d1bd8a_          16 QEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASP-NVQDT-SGTSPVHDAARTGFLDTLKVLVEHGA   92 (156)
T ss_dssp             HHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccccc-ccccc-cccccccccccccccccccccccccc
Confidence            578999999999999999999999999875 8899999999999887 77776 89999999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhcc
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKT  151 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~  151 (355)
                      ++ +.+|.+|+||||+|++.|+.+++++|++     |++++.+|.+|+||||+|++.|+ .+++++|+++
T Consensus        93 ~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~~-----~~~~~~~d~~G~TpL~~A~~~g~-~~iv~~Ll~h  155 (156)
T d1bd8a_          93 DV-NVPDGTGALPIHLAVQEGHTAVVSFLAA-----ESDLHRRDARGLTPLELALQRGA-QDLVDILQGH  155 (156)
T ss_dssp             CS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT-----TSCTTCCCTTSCCHHHHHHHSCC-HHHHHHHHTT
T ss_pred             cc-ccccCCCCeeeccccccccccccccccc-----cccccccCCCCCCHHHHHHHcCC-HHHHHHHHhh
Confidence            88 7889999999999999999999997765     56899999999999999999996 8899999875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.9e-24  Score=199.22  Aligned_cols=166  Identities=23%  Similarity=0.239  Sum_probs=143.6

Q ss_pred             hccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcccccccc
Q 042924           10 IKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDN   89 (355)
Q Consensus        10 ~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~   89 (355)
                      .........+.+|.||||+|+..++.++++.+++.+... +..+. .|.||||.|+..++.+++++|++.+.++ +..+.
T Consensus       219 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~-~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~  295 (408)
T d1n11a_         219 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTR  295 (408)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCS
T ss_pred             hccccccccCCCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccC-CCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccc
Confidence            344445566777888888888888888888888877766 66676 8899999999999999999999999988 77888


Q ss_pred             CCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHH
Q 042924           90 RGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIF  169 (355)
Q Consensus        90 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a  169 (355)
                      .+.||||.++..++.++++.+++    .|.++|.+|.+|+||||+|++.|+ .+++++|+++|+|++.+|++|+||+|+|
T Consensus       296 ~~~t~L~~~~~~~~~~~~~~ll~----~g~~in~~d~~G~T~Lh~A~~~g~-~~iv~~Ll~~GAd~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         296 MGYTPLHVASHYGNIKLVKFLLQ----HQADVNAKTKLGYSPLHQAAQQGH-TDIVTLLLKNGASPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             SCCCHHHHHHHSSCSHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             cccccchhhcccCcceeeeeecc----ccccccccCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            99999999999999999999999    788999999999999999999995 9999999999999999999999999999


Q ss_pred             hhCCCchHHHHHHHHHH
Q 042924          170 NYGYPELKEEIQKLSKD  186 (355)
Q Consensus       170 ~~~~~~~~~~i~~~l~~  186 (355)
                      ...+   ..+++++|+.
T Consensus       371 ~~~~---~~~iv~~L~~  384 (408)
T d1n11a_         371 KRLG---YISVTDVLKV  384 (408)
T ss_dssp             HHTT---CHHHHHHHHH
T ss_pred             HHcC---CHHHHHHHHH
Confidence            9765   2345555544

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.4e-25  Score=169.99  Aligned_cols=121  Identities=20%  Similarity=0.172  Sum_probs=109.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCc-hHHHHHH
Q 042924           21 YGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGW-NFLHYAV   99 (355)
Q Consensus        21 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~   99 (355)
                      .+.++||+||+.|+.++++.|+++|+++ +.++. .|.||||.| ..|+.+++++|++.++++ +.+|..|. ||||+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~-~g~t~l~~a-~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPNS-YGRRPIQVM-MMGSARVAELLLLHGAEP-NCADPATLTRPVHDAA   77 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCS-SSCCTTTSS-CTTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccc-ccccccccc-cccccccccccccccccc-cccccccccccccccc
Confidence            4678999999999999999999999887 78887 999999976 479999999999999998 77777765 6999999


Q ss_pred             hcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhc
Q 042924          100 VSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRK  150 (355)
Q Consensus       100 ~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~  150 (355)
                      ++|+.+++++|++    .|.+++.+|.+|+||||+|++.|+ .+++++|+.
T Consensus        78 ~~g~~~~v~~Ll~----~ga~~~~~d~~G~T~l~~A~~~g~-~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHR----AGARLDVRDAWGRLPVDLAEELGH-RDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHH----HTCCSSCCCTTCCCHHHHHHHHTC-HHHHHHHSS
T ss_pred             ccccccccccccc----cccccccccCCCCCHHHHHHHcCC-HHHHHHHHh
Confidence            9999999999999    788999999999999999999996 888998875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.4e-24  Score=186.94  Aligned_cols=187  Identities=20%  Similarity=0.168  Sum_probs=127.1

Q ss_pred             hHHHHHHHhccccccccC-CCCChHHHHHHHcCCHHHHHHhhccCCCcc-------------------------------
Q 042924            2 AALSKLLEIKKNLIKETD-QYGWTPIHYAAYYGNYGTVNLLLETDQSAS-------------------------------   49 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d-~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~-------------------------------   49 (355)
                      ++++.|++ ++.++|.++ ..|+||||+|+..|+.++++.|++.+....                               
T Consensus        19 e~vk~Ll~-~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (285)
T d1wdya_          19 DLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD   97 (285)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHH-CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhccc
Confidence            34555555 566677665 579999999999999999999988644330                               


Q ss_pred             -cccccCCCchHHHHHHhcCCHHHHHHHhhhCCcc---------ccccccCCchHHHHHHhcCChhHHHHHHhcC-----
Q 042924           50 -NIADKDRKMTALHLAAGKGDARIVEAIISKNPEC---------YELVDNRGWNFLHYAVVSFRVEKLTNLLENN-----  114 (355)
Q Consensus        50 -~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~---------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~-----  114 (355)
                       ...+ ..+.++++.|+..|+...++.++....+.         ....+..|.||||+|+++|+.++++.|++..     
T Consensus        98 ~~~~~-~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~  176 (285)
T d1wdya_          98 VNECD-FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN  176 (285)
T ss_dssp             TTCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT
T ss_pred             ccccc-cCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcc
Confidence             0111 13444455555555555444444432221         1123344555555555555555555544310     


Q ss_pred             -----------------------------hhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhc-cCcccccccCCCCc
Q 042924          115 -----------------------------PLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRK-TQANYDAVNKQIVS  164 (355)
Q Consensus       115 -----------------------------~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~-~ga~~~~~n~~g~T  164 (355)
                                                   ...|+++|.+|.+|+||||.|+..|+ .+++++|++ .|++++.+|.+|.|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~-~~~v~~lL~~~g~din~~d~~G~T  255 (285)
T d1wdya_         177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH-LGLVQRLLEQEHIEINDTDSDGKT  255 (285)
T ss_dssp             CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC-HHHHHHHHHSSSCCTTCCCTTSCC
T ss_pred             cccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCc-HHHHHHHHHcCCCCCcCCCCCCCC
Confidence                                         01456778899999999999999996 788888775 69999999999999


Q ss_pred             HHHHHhhCCCchHHHHHHHHHHcCCCCCCC
Q 042924          165 VRHIFNYGYPELKEEIQKLSKDVGRGQYSD  194 (355)
Q Consensus       165 pl~~a~~~~~~~~~~i~~~l~~~~~~~~~~  194 (355)
                      |||+|++..   ..+++++|.++|+++...
T Consensus       256 pL~~A~~~~---~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         256 ALLLAVELK---LKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHSSCSCCS
T ss_pred             HHHHHHHcC---CHHHHHHHHHCCCCCCcc
Confidence            999999776   678999999999988643

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.2e-23  Score=179.82  Aligned_cols=166  Identities=18%  Similarity=0.131  Sum_probs=133.4

Q ss_pred             ChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcc--ccccccCCchHHHHHHh
Q 042924           23 WTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC--YELVDNRGWNFLHYAVV  100 (355)
Q Consensus        23 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~  100 (355)
                      .||||+||..|+.++++.|++..+...+.++. +|+||||+|+..|+.+++++|++.++++  .+..|..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCC-CCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            48999999999999999999977666688887 9999999999999999999999998765  24456677788887777


Q ss_pred             cCChhHHHHHHhcCh-------------------------------hhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHh
Q 042924          101 SFRVEKLTNLLENNP-------------------------------LARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVR  149 (355)
Q Consensus       101 ~~~~~~~~~Ll~~~~-------------------------------~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~  149 (355)
                      .+..++++.++....                               ..+...+.+|.+|+||||+|+..|+ .+++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll  158 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS-LKLIELLC  158 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC-HHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccc-cccccccc
Confidence            777666655443210                               1345567789999999999999996 78888888


Q ss_pred             ccC-cccccccCCCCcHHHHHhhCCCchHHHHHHHHHH-cCCCCCC
Q 042924          150 KTQ-ANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKD-VGRGQYS  193 (355)
Q Consensus       150 ~~g-a~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~-~~~~~~~  193 (355)
                      +.+ .+++.+|.+|+||||+|+...   ..+++++|.+ .|.++..
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~---~~~~v~~Ll~~~gad~~~  201 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEG---HGDAAVLLVEKYGAEYDL  201 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTT---CHHHHHHHHHHHCCCSCC
T ss_pred             ccccccccccccccCCchhhhcccc---cHHHHHHHHHhcCCCCCC
Confidence            876 788999999999999999765   4567777775 5766543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.91  E-value=3.2e-24  Score=188.50  Aligned_cols=171  Identities=18%  Similarity=0.131  Sum_probs=140.0

Q ss_pred             ccccC-CCCChHHHHHHHcCCHHHHHHhh--------ccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCcccc
Q 042924           15 IKETD-QYGWTPIHYAAYYGNYGTVNLLL--------ETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYE   85 (355)
Q Consensus        15 ~~~~d-~~G~tpLh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~   85 (355)
                      +|..| ++|+||||+||..|+.++++.|+        +.|+++ +.+|. +|+||||+|+..|+.+++++|++.|+++ +
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n  101 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDC-DENTPLMLAVLARRRRLVAYLMKAGADP-T  101 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCS-C
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCC-CCCeeecccccccccccccccccccccc-c
Confidence            34455 46999999999999999887774        567777 78887 9999999999999999999999999998 8


Q ss_pred             ccccCCchHHHHHHhcCChhHHHHHHhcCh-------------------------------------------hhhhhhc
Q 042924           86 LVDNRGWNFLHYAVVSFRVEKLTNLLENNP-------------------------------------------LARSLIN  122 (355)
Q Consensus        86 ~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~-------------------------------------------~~~~~~n  122 (355)
                      .+|.+|+||||+|+..++.++...+.....                                           ......+
T Consensus       102 ~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (277)
T d2fo1e1         102 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  181 (277)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccc
Confidence            889999999999999999887776644210                                           0112244


Q ss_pred             cCCCCCCcHHHHHHhcCCchHHH-HHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCC
Q 042924          123 EGDAKGNTPLHVLAAIRPNEFDV-DLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQY  192 (355)
Q Consensus       123 ~~d~~G~T~Lh~A~~~~~~~~~~-~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~  192 (355)
                      ..+.+|.||||+++..++ .... .++...+.+.+.+|..|+||||+|+...   ..+++++|.+.|.++.
T Consensus       182 ~~~~~g~t~L~~~~~~~~-~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g---~~~iv~~Ll~~gadin  248 (277)
T d2fo1e1         182 SEKYKGRTALHYAAQVSN-MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG---RIEVVMYLIQQGASVE  248 (277)
T ss_dssp             SSSCCCCCTHHHHHSSCC-HHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT---CHHHHHHHHHTTCCSS
T ss_pred             ccccCCCCcccccccccc-ccccccccccccccccccCCCCCCHHHHHHHcC---CHHHHHHHHHCcCCCC
Confidence            567789999999999996 5555 4577889999999999999999999765   4578899999887764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.90  E-value=1.2e-23  Score=186.45  Aligned_cols=166  Identities=20%  Similarity=0.123  Sum_probs=143.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHh
Q 042924           21 YGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVV  100 (355)
Q Consensus        21 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  100 (355)
                      +|.||||.||..|+.++|+.|+++|+++ +.++. +|.||||+|+.+|+.+++++|++.+++. ...+..+.+|||.++.
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~-~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADI-NYANV-DGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCC-CccCC-CCCcHHHHHHhcCCceeeeeeccccccc-cccccccccccccccc
Confidence            3569999999999999999999999987 88887 9999999999999999999999999887 7778999999999999


Q ss_pred             cCChhHHHHHHhcChhh--------------------------------------------------------hhhhccC
Q 042924          101 SFRVEKLTNLLENNPLA--------------------------------------------------------RSLINEG  124 (355)
Q Consensus       101 ~~~~~~~~~Ll~~~~~~--------------------------------------------------------~~~~n~~  124 (355)
                      .++.++++.|++.....                                                        .......
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             ccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            99999999988632100                                                        0012345


Q ss_pred             CCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          125 DAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       125 d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                      +.+|.||||.|+..|+ .++++.|++.|++++.++.+|.||||+|+...   ..+++++|.+.|.++..
T Consensus       196 ~~~g~t~L~~a~~~~~-~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g---~~~iv~lLl~~Gadv~~  260 (291)
T d1s70b_         196 AKSGGTALHVAAAKGY-TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG---KEEACRILVENLCDMEA  260 (291)
T ss_dssp             TTTCCCHHHHHHHHTC-HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTT---CHHHHHHHHHTTCCTTC
T ss_pred             cCCCCChhhHHHHcCC-hhhhcccccceecccccccCCCCHHHHHHHcC---CHHHHHHHHHCCCCCCC
Confidence            7789999999999995 89999999999999999999999999999765   56888999998877643

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.6e-24  Score=181.96  Aligned_cols=166  Identities=20%  Similarity=0.128  Sum_probs=140.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHhhc----cCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHH
Q 042924           21 YGWTPIHYAAYYGNYGTVNLLLE----TDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLH   96 (355)
Q Consensus        21 ~G~tpLh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (355)
                      +|.||||+|+..|+.+++..|++    .+.++ +.++. +|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~-~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCC-CCCccccccccccccccccccccccccc-cccccccccccc
Confidence            69999999999999766655554    56665 88887 9999999999999999999999999998 889999999999


Q ss_pred             HHHhcCChhHHHHHHhcChh--hhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCccccccc-CCCCcHHHHHhhCC
Q 042924           97 YAVVSFRVEKLTNLLENNPL--ARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVN-KQIVSVRHIFNYGY  173 (355)
Q Consensus        97 ~A~~~~~~~~~~~Ll~~~~~--~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n-~~g~Tpl~~a~~~~  173 (355)
                      .++.+++.++++.+++....  .....+....+|+||||.|+..++ ...+.+|.+.|++++..+ .+|.||+|+|...+
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g  156 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY-LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  156 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTC-HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCC-hhheeeecccCcccccccccCCCCccccccccc
Confidence            99999999999999885432  223455667789999999999995 888899999999998776 57999999999766


Q ss_pred             CchHHHHHHHHHHcCCCCCC
Q 042924          174 PELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       174 ~~~~~~i~~~l~~~~~~~~~  193 (355)
                         ..+++++|.+.|.++..
T Consensus       157 ---~~~~v~~Ll~~gad~~~  173 (221)
T d1iknd_         157 ---NPDLVSLLLKCGADVNR  173 (221)
T ss_dssp             ---CHHHHHHHHTTTCCSCC
T ss_pred             ---cHHHHHHHHhcCCcccc
Confidence               56888999988876643

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.1e-24  Score=167.12  Aligned_cols=106  Identities=22%  Similarity=0.140  Sum_probs=71.8

Q ss_pred             hHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhc
Q 042924           59 TALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI  138 (355)
Q Consensus        59 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~  138 (355)
                      |||++|+++|+.++++.|++.|+++ +.+|.+|+||||+|+.+++.+++++|++    .|.++|.+|.+|+||||+|+..
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~----~g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLL----KGADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHH----SSCTTTCCSSSCSCHHHHHHTT
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-cccccccccccccccccccccccccccc----ccceeeecccccccchhhhhhc
Confidence            6666666666666666666666665 5566666667776666666666666666    5566666677777777777776


Q ss_pred             CCchHHHHHHhccCcccccccCCCCcHHHHHh
Q 042924          139 RPNEFDVDLVRKTQANYDAVNKQIVSVRHIFN  170 (355)
Q Consensus       139 ~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~  170 (355)
                      |+ .+++++|+++|+|++.+|++|+||+|+|.
T Consensus        79 ~~-~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          79 GH-VSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TC-CHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             Cc-hhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            64 66666666777777777777777766653

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-23  Score=168.72  Aligned_cols=142  Identities=19%  Similarity=0.262  Sum_probs=126.9

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.++.|++ ++.+++.+|.+|.||||+|+ .|+.+++++|+++++++ +..+. .|.+|++.++..++.+.++.|++.+.
T Consensus        15 ~~v~~Ll~-~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~~~   90 (156)
T d1ihba_          15 EQLTSLLQ-NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDR-TGFAVIHDAARAGFLDTLQTLLEFQA   90 (156)
T ss_dssp             HHHHHHTT-SCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHH-CCCCcCccCCcccccccccc-ccccccccccccccccc-ccccc-cCcccccccccccccccccccccccc
Confidence            34555555 56778999999999999886 79999999999999987 77787 89999999999999999999999998


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccC
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQ  152 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~g  152 (355)
                      +. +..|..|.+|+|+|+..++.++++.|++..   +.+.+.+|.+|+||||+|++.++ .+++++|+++|
T Consensus        91 ~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~d~~g~TpL~~A~~~~~-~~iv~~Ll~~G  156 (156)
T d1ihba_          91 DV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT---ASNVGHRNHKGDTACDLARLYGR-NEVVSLMQANG  156 (156)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHS---CCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTC
T ss_pred             cc-cccccccccccccccccccccccccccccc---cccccccCCCCCCHHHHHHHcCC-HHHHHHHHhcC
Confidence            88 888999999999999999999999999942   24789999999999999999996 88999999876

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=7.4e-25  Score=168.19  Aligned_cols=107  Identities=21%  Similarity=0.149  Sum_probs=101.9

Q ss_pred             ChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcC
Q 042924           23 WTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSF  102 (355)
Q Consensus        23 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  102 (355)
                      .|||++|++.|+.++++.|+++|.++ +.++. .|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+.+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~-~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLE-GGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSS-SSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccc-ccccccccccccccccccccccccccee-eecccccccchhhhhhcC
Confidence            48999999999999999999999987 88887 9999999999999999999999999998 889999999999999999


Q ss_pred             ChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHH
Q 042924          103 RVEKLTNLLENNPLARSLINEGDAKGNTPLHVLA  136 (355)
Q Consensus       103 ~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~  136 (355)
                      +.+++++|++    .|+++|.+|.+|+||||+|.
T Consensus        80 ~~~~v~~Ll~----~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          80 HVSCVKLLLS----KGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CCHHHHHHHT----TCCCSSSSSSSTCCCCCTCS
T ss_pred             chhhhhhhhc----ccccceeeCCCCCCHHHHHh
Confidence            9999999999    78899999999999999883

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.6e-22  Score=184.92  Aligned_cols=174  Identities=23%  Similarity=0.213  Sum_probs=145.8

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      +.|+.|++ +++++|.+|..|+||||+||..|+.+++++|+++|+++ +.++. +|.||||+|+..|+.++++.|+...+
T Consensus        14 ~~v~~Ll~-~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~-~g~t~L~~A~~~g~~~~~~~Ll~~~~   90 (408)
T d1n11a_          14 PIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAK-DDQTPLHCAARIGHTNMVKLLLENNA   90 (408)
T ss_dssp             HHHHHHHH-TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHhhh
Confidence            45566665 56778999999999999999999999999999999887 88887 89999999999999999999987654


Q ss_pred             cc--------------------------------ccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCC
Q 042924           82 EC--------------------------------YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGN  129 (355)
Q Consensus        82 ~~--------------------------------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~  129 (355)
                      +.                                ....|.++.++++.|+..++.++++.|++    .+..++..|.+|.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~----~~~~~~~~~~~~~  166 (408)
T d1n11a_          91 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE----RDAHPNAAGKNGL  166 (408)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCSSCC
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCcCc
Confidence            32                                13346778899999999999999999998    6788999999999


Q ss_pred             cHHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHH
Q 042924          130 TPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKD  186 (355)
Q Consensus       130 T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~  186 (355)
                      +|||+|+..++ .+++++|+++|++++..+..|.||++.+....   ..++...+..
T Consensus       167 ~~L~~A~~~~~-~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~---~~~~~~~l~~  219 (408)
T d1n11a_         167 TPLHVAVHHNN-LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN---QVEVARSLLQ  219 (408)
T ss_dssp             CHHHHHHHTTC-HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTT---CHHHHHHHHH
T ss_pred             hHHHHHHHcCC-HHHHHHHHhcCCcccccCCCCCCcchhhhccc---hhhhhhhhhh
Confidence            99999999995 88899999999999999999999999988654   2334444444

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.5e-23  Score=162.36  Aligned_cols=120  Identities=17%  Similarity=0.183  Sum_probs=84.4

Q ss_pred             hHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCC
Q 042924           24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFR  103 (355)
Q Consensus        24 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  103 (355)
                      ++||.||..|+.++++.|+++|+++ +.+++ +|+||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+.+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~-~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPND-EGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccc-cccccccccccccccccccccccccccc-ccccccCcccccccchhhH
Confidence            5677777777777777777777776 66666 7777777777777777777777777766 6677777777777777777


Q ss_pred             hhHHHHHHhcChhhhhhhccCCC-CCCcHHHHH--HhcCCchHHHHHHhcc
Q 042924          104 VEKLTNLLENNPLARSLINEGDA-KGNTPLHVL--AAIRPNEFDVDLVRKT  151 (355)
Q Consensus       104 ~~~~~~Ll~~~~~~~~~~n~~d~-~G~T~Lh~A--~~~~~~~~~~~lL~~~  151 (355)
                      .++++.|++    .|++++.++. +|+||++++  +..|+ .+++++|+..
T Consensus        80 ~~~v~~Ll~----~ga~v~~~~~~~~~~~~~~~~a~~~g~-~eiv~~L~~~  125 (130)
T d1ycsb1          80 VQVCKFLVE----SGAAVFAMTYSDMQTAADKCEEMEEGY-TQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHH----TTCCTTCCCSSSCCCHHHHCCSSSTTC-CCHHHHHHHH
T ss_pred             HHHHHHHHH----cCCCcccccCCCCCCHHHHHHHHHcCh-HHHHHHHHhH
Confidence            777777777    5666776653 467776654  34453 5666766544

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.7e-23  Score=161.02  Aligned_cols=121  Identities=13%  Similarity=0.025  Sum_probs=109.6

Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCC-cHHHH
Q 042924           56 RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGN-TPLHV  134 (355)
Q Consensus        56 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~-T~Lh~  134 (355)
                      .+.++||+|+.+|+.+++++|++.|+++ +.+|..|+||+|.|+ .|+.+++++|++    .|+++|.+|..|. ||||+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLL----HGAEPNCADPATLTRPVHD   75 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHT----TTCCCCCCCTTTCCCHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccc----ccccccccccccccccccc
Confidence            5679999999999999999999999988 889999999999775 689999999999    7889999998876 69999


Q ss_pred             HHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHH
Q 042924          135 LAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKD  186 (355)
Q Consensus       135 A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~  186 (355)
                      |++.|+ .+++++|+++|++++.+|.+|+||+|+|...+   ..+++++|++
T Consensus        76 A~~~g~-~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g---~~~~v~~Lls  123 (125)
T d1bi7b_          76 AAREGF-LDTLVVLHRAGARLDVRDAWGRLPVDLAEELG---HRDVARYLRA  123 (125)
T ss_dssp             HHHHTC-HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHT---CHHHHHHHSS
T ss_pred             cccccc-ccccccccccccccccccCCCCCHHHHHHHcC---CHHHHHHHHh
Confidence            999996 89999999999999999999999999999765   5677777764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4.7e-22  Score=159.15  Aligned_cols=137  Identities=24%  Similarity=0.310  Sum_probs=122.2

Q ss_pred             hHHHHHHHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCC
Q 042924            2 AALSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP   81 (355)
Q Consensus         2 ~~v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~   81 (355)
                      ++++.||+.+. .++ .|..|+||||+|+..++.++++.++...... ...+. .+.+++|.++...+.++++.+...+.
T Consensus        16 ~~v~~LL~~ga-~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (153)
T d1awcb_          16 DEVRILMANGA-PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTK-VDRTPLHMAASEGHANIVEVLLKHGA   91 (153)
T ss_dssp             HHHHHHHHHTC-CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             HHHHHHHHcCC-Ccc-cccCCCccccccccccccccccccccccccc-ccccc-ccccccccccccccceeeecccccCC
Confidence            56777777654 455 7999999999999999999999999987766 44444 78899999999999999999999999


Q ss_pred             ccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHH
Q 042924           82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLV  148 (355)
Q Consensus        82 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL  148 (355)
                      +. +.+|.+|+||||+|+..|+.+++++|++    .|+++|.+|.+|+||||+|+..|+ .+++++|
T Consensus        92 ~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~----~gad~~~~d~~g~Tpl~~A~~~g~-~eiv~lL  152 (153)
T d1awcb_          92 DV-NAKDMLKMTALHWATEHNHQEVVELLIK----YGADVHTQSKFCKTAFDISIDNGN-EDLAEIL  152 (153)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHH
T ss_pred             cc-ccccccCchHHHhhhhcchhheeeeccc----cccCCcccCCCCCCHHHHHHHcCC-HHHHHhC
Confidence            88 7889999999999999999999999999    788999999999999999999996 8888876

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.9e-22  Score=155.48  Aligned_cols=122  Identities=19%  Similarity=0.168  Sum_probs=106.9

Q ss_pred             chHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHh
Q 042924           58 MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA  137 (355)
Q Consensus        58 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~  137 (355)
                      .++||.||..|+.++++.|++.|+++ +.+|.+|+||||+|+..++.++++.|++    .|.++|.+|.+|+||||+|+.
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~----~g~~~~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQ----FGVNVNAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccc----cccccccccccCcccccccch
Confidence            37899999999999999999999998 8899999999999999999999999999    788999999999999999999


Q ss_pred             cCCchHHHHHHhccCcccccccC-CCCcHHHHHhhCCCchHHHHHHHHHH
Q 042924          138 IRPNEFDVDLVRKTQANYDAVNK-QIVSVRHIFNYGYPELKEEIQKLSKD  186 (355)
Q Consensus       138 ~~~~~~~~~lL~~~ga~~~~~n~-~g~Tpl~~a~~~~~~~~~~i~~~l~~  186 (355)
                      .|+ .+++++|+++|++++.++. +|+||++++...... ..+++++|.+
T Consensus        77 ~g~-~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g-~~eiv~~L~~  124 (130)
T d1ycsb1          77 CNN-VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG-YTQCSQFLYG  124 (130)
T ss_dssp             TTC-HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTT-CCCHHHHHHH
T ss_pred             hhH-HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcC-hHHHHHHHHh
Confidence            996 8999999999999998874 699999988632211 2346666654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=1.5e-23  Score=191.06  Aligned_cols=104  Identities=19%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             HHhccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCccccccc-CCCchHHHHHHhcCCHHHHHHHhhhCCccc--
Q 042924            8 LEIKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADK-DRKMTALHLAAGKGDARIVEAIISKNPECY--   84 (355)
Q Consensus         8 L~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~--   84 (355)
                      |...++.+|.+|.+|+||||+||+.||.++|++|++.|++. +..+. .+|.||||+|+.+|+.+++++|++.+++..  
T Consensus       112 L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~  190 (346)
T d2ajaa1         112 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA  190 (346)
T ss_dssp             C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHH
T ss_pred             HHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhhHHHHHHHHHcCCccccc
Confidence            44455556666666666666666666666666666666554 33332 145666666666666666666666655431  


Q ss_pred             cccccCCchHHHHHHhcCChhHHHHHHh
Q 042924           85 ELVDNRGWNFLHYAVVSFRVEKLTNLLE  112 (355)
Q Consensus        85 ~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~  112 (355)
                      +..+.+|.||+|.|+++|+.+++++|++
T Consensus       191 ~~~~~~~~t~l~~A~~~g~~~iv~~Ll~  218 (346)
T d2ajaa1         191 MIQAENYYAFRWAAVGRGHHNVINFLLD  218 (346)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred             ccccCCCcchhhHHhhcCHHHHHHHHHh
Confidence            2233445555566666666666666655

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.86  E-value=1.5e-23  Score=191.03  Aligned_cols=143  Identities=12%  Similarity=0.072  Sum_probs=116.0

Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHH---hhccCCCcccccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccc--
Q 042924           14 LIKETDQYGWTPIHYAAYYGNYGTVNL---LLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVD--   88 (355)
Q Consensus        14 ~~~~~d~~G~tpLh~Aa~~g~~~~v~~---Ll~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--   88 (355)
                      .++.+|.+|.||||+||+.|+.++++.   |++.|+++ +.++. +|+||||+||++|+.+++++|++.+++. +..|  
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~-~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~  158 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQA-ENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQ  158 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CH-HHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHS
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccc
Confidence            346778899999999999999877654   78888887 88887 9999999999999999999999999987 5544  


Q ss_pred             cCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccCC
Q 042924           89 NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQ  161 (355)
Q Consensus        89 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~  161 (355)
                      .+|+||||+|+++|+.+++++|++.... ....+..+.+|.||+|.|+..|+ .+++++|++.|++++..+..
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~~~~~t~l~~A~~~g~-~~iv~~Ll~~ga~~~~~~~~  229 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGH-HNVINFLLDCPVMLAYAEIH  229 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCC-HHHHHHHTTSHHHHHHHHHC
T ss_pred             cCCCChhHHHHHHhhHHHHHHHHHcCCc-ccccccccCCCcchhhHHhhcCH-HHHHHHHHhCCCCcchHHHH
Confidence            5699999999999999999999995431 22345556678888899999996 89999999999988755433

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-21  Score=171.29  Aligned_cols=138  Identities=22%  Similarity=0.231  Sum_probs=120.9

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHhhcc-CCCcccccccCCCchHHHHHHhc----CCHHHHHHHhhhCCccccccccC
Q 042924           16 KETDQYGWTPIHYAAYYGNYGTVNLLLET-DQSASNIADKDRKMTALHLAAGK----GDARIVEAIISKNPECYELVDNR   90 (355)
Q Consensus        16 ~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpLh~Aa~~----g~~~~v~~Ll~~~~~~~~~~d~~   90 (355)
                      +..+..|.||||+|++.|+.++++.|+++ +.++ +..+. .|.++++.+...    +..++++.|++.++++ +.+|..
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~  218 (285)
T d1wdya_         142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGER  218 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTT
T ss_pred             hhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccC-CCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCC
Confidence            45567899999999999999999999975 4555 77776 888887776543    3457999999999998 788999


Q ss_pred             CchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcccccccC
Q 042924           91 GWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNK  160 (355)
Q Consensus        91 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~  160 (355)
                      |+||||.|++.|+.++++.|++.   .|.++|.+|.+|+||||+|++.|+ .+++++|+++|||+|++|.
T Consensus       219 g~t~L~~a~~~~~~~~v~~lL~~---~g~din~~d~~G~TpL~~A~~~~~-~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         219 GKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKL-KKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHHSSCSCCSSC
T ss_pred             CCCccchhhhcCcHHHHHHHHHc---CCCCCcCCCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCcccC
Confidence            99999999999999999999984   467999999999999999999996 9999999999999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.6e-21  Score=154.15  Aligned_cols=123  Identities=20%  Similarity=0.265  Sum_probs=95.4

Q ss_pred             HHHHHHHcCCHHHHHHhhccCCCcccc-----cccCCCchHHHHHHh---cCCHHHHHHHhhhCCccccccccCCchHHH
Q 042924           25 PIHYAAYYGNYGTVNLLLETDQSASNI-----ADKDRKMTALHLAAG---KGDARIVEAIISKNPECYELVDNRGWNFLH   96 (355)
Q Consensus        25 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~-----~~~~~g~tpLh~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh   96 (355)
                      .|+.|++.++...+..++..|.+....     .+ ..|+||||+|++   .|+.+++++|++.|+++ +.+|.+|+||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGH-EPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCS-STTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCC-CCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccc
Confidence            345677888888888888776654211     13 368888888886   36788888888888887 778888888888


Q ss_pred             HHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHHHHHhccCcc
Q 042924           97 YAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQAN  154 (355)
Q Consensus        97 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~lL~~~ga~  154 (355)
                      +|++.|+.++++.|++    .|++++.+|.+|+||||+|++.|+ .+++++|++.+..
T Consensus        87 ~A~~~~~~~~v~~Ll~----~gad~~~~d~~g~tpL~~A~~~~~-~~i~~~L~~~~~~  139 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLR----GKASIEIANESGETPLDIAKRLKH-EHCEELLTQALSG  139 (154)
T ss_dssp             HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHHHHTT
T ss_pred             cccccccccccccccc----cCccccccCCCCCCHHHHHHHcCC-HHHHHHHHHhCCC
Confidence            8888888888888888    677888888888888888888885 7888888776543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.6e-20  Score=150.26  Aligned_cols=129  Identities=16%  Similarity=0.102  Sum_probs=109.8

Q ss_pred             hHHHHHHhcCCHHHHHHHhhhCCccc-----cccccCCchHHHHHHhc---CChhHHHHHHhcChhhhhhhccCCCCCCc
Q 042924           59 TALHLAAGKGDARIVEAIISKNPECY-----ELVDNRGWNFLHYAVVS---FRVEKLTNLLENNPLARSLINEGDAKGNT  130 (355)
Q Consensus        59 tpLh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~---~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T  130 (355)
                      ..|+.|++.+....+..++..+.+..     ...+..|+||||+|++.   +..+++++|++    .|+++|.+|.+|+|
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~----~gadin~~d~~g~T   83 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ----NSGNLDKQTGKGST   83 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH----HCSCTTCCCTTCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHH----cCCChhhhhhhhcc
Confidence            34557789999999999998887652     22367899999999975   56789999999    78899999999999


Q ss_pred             HHHHHHhcCCchHHHHHHhccCcccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCCCc
Q 042924          131 PLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYSDG  195 (355)
Q Consensus       131 ~Lh~A~~~~~~~~~~~lL~~~ga~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~~~  195 (355)
                      |||+|++.|+ .+++++|+++|++++.+|.+|+||+|+|....   ..+++++|.+++.+.....
T Consensus        84 pLh~A~~~~~-~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~---~~~i~~~L~~~~~~~~~~~  144 (154)
T d1dcqa1          84 ALHYCCLTDN-AECLKLLLRGKASIEIANESGETPLDIAKRLK---HEHCEELLTQALSGRFNSH  144 (154)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT---CHHHHHHHHHHHTTCCCSS
T ss_pred             cccccccccc-ccccccccccCccccccCCCCCCHHHHHHHcC---CHHHHHHHHHhCCCCCCcc
Confidence            9999999996 99999999999999999999999999999765   5688888888777666543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.5e-21  Score=162.25  Aligned_cols=137  Identities=17%  Similarity=0.131  Sum_probs=115.6

Q ss_pred             hHHHHHHH---hccccccccCCCCChHHHHHHHcCCHHHHHHhhccCCCcc-----------------------------
Q 042924            2 AALSKLLE---IKKNLIKETDQYGWTPIHYAAYYGNYGTVNLLLETDQSAS-----------------------------   49 (355)
Q Consensus         2 ~~v~~lL~---~~~~~~~~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~-----------------------------   49 (355)
                      +.++.|+.   +.+.++|.+|.+|+||||+|+..|+.++++.|++++++..                             
T Consensus        17 ~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   96 (228)
T d1k1aa_          17 PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA   96 (228)
T ss_dssp             HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcc
Confidence            34555554   5777899999999999999999999999999998765430                             


Q ss_pred             -----------------------------------------cccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccc
Q 042924           50 -----------------------------------------NIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVD   88 (355)
Q Consensus        50 -----------------------------------------~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d   88 (355)
                                                               .... ..|.+|||.|+..+..++++.+++.+.+. +.+|
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~d  174 (228)
T d1k1aa_          97 APGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI-KSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQM  174 (228)
T ss_dssp             CTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBC
T ss_pred             ccccccccccccccccccccccccccchhhhhhhccccccccccc-cchhhHHHHHHHhhhhhhhhhhhhhcccc-cccc
Confidence                                                     0111 36778888999999999999999988877 7789


Q ss_pred             cCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCCcHHHHHHhcCCchHHH
Q 042924           89 NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDV  145 (355)
Q Consensus        89 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~  145 (355)
                      ..|.||||+|+.+|+.+++++|++    .|+++|.+|.+|+||||+|++.|+ .+++
T Consensus       175 ~~g~t~L~~A~~~g~~~~v~~Ll~----~Gad~n~~d~~G~TpL~~A~~~~~-~div  226 (228)
T d1k1aa_         175 YSGSSALHSASGRGLLPLVRTLVR----SGADSSLKNCHNDTPLMVARSRRV-IDIL  226 (228)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCTTTTCSSHHH-HHHH
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHhCCC-cccc
Confidence            999999999999999999999999    788999999999999999999884 4443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=3.7e-19  Score=149.34  Aligned_cols=137  Identities=24%  Similarity=0.193  Sum_probs=116.3

Q ss_pred             HHHHHHhccccccccCCCCChHHHHHHHcCCHHH----------------------------------HHHhhccCCCcc
Q 042924            4 LSKLLEIKKNLIKETDQYGWTPIHYAAYYGNYGT----------------------------------VNLLLETDQSAS   49 (355)
Q Consensus         4 v~~lL~~~~~~~~~~d~~G~tpLh~Aa~~g~~~~----------------------------------v~~Ll~~~~~~~   49 (355)
                      +.++|...+..++.+|..+.+|++.++..++...                                  .+.|.+.+.+. 
T Consensus        38 ~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-  116 (209)
T d1ot8a_          38 AAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-  116 (209)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-
T ss_pred             HHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc-
Confidence            3444555666789999999999999997766433                                  34444455554 


Q ss_pred             cccccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCChhHHHHHHhcChhhhhhhccCCCCCC
Q 042924           50 NIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGN  129 (355)
Q Consensus        50 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~  129 (355)
                      +.++. .|.||||.++..|..++++.+++.+.+. +..|.+|.||||+|+.+|+.++++.|++    .|++++.+|.+|+
T Consensus       117 ~~~~~-~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~TpL~~A~~~g~~~~v~~Ll~----~gad~n~~d~~g~  190 (209)
T d1ot8a_         117 NAADN-SGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLD----NFANREITDHMDR  190 (209)
T ss_dssp             TCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSC
T ss_pred             cccCC-CCCCcchhhcccCcceeeeeeccccccc-cccccccccccchhccccHHHHHHHHHH----CCCCCCCcCCCCC
Confidence            56666 8999999999999999999999999888 8889999999999999999999999999    7889999999999


Q ss_pred             cHHHHHHhcCCchHHHHHH
Q 042924          130 TPLHVLAAIRPNEFDVDLV  148 (355)
Q Consensus       130 T~Lh~A~~~~~~~~~~~lL  148 (355)
                      ||||+|++.|+ .+++++|
T Consensus       191 Tpl~~A~~~~~-~~iv~lL  208 (209)
T d1ot8a_         191 LPRDVASERLH-HDIVRLL  208 (209)
T ss_dssp             CHHHHHHHTTC-HHHHHHH
T ss_pred             CHHHHHHHcCC-HHHHhhc
Confidence            99999999996 8888886

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=7.4e-19  Score=156.50  Aligned_cols=140  Identities=19%  Similarity=0.131  Sum_probs=104.3

Q ss_pred             CCCccccc-ccCCCchHHHHHHhcCCHHHHHHHhhhCCccccccccCCchHHHHHHhcCC---hhHHHHHHhcChhhhhh
Q 042924           45 DQSASNIA-DKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFR---VEKLTNLLENNPLARSL  120 (355)
Q Consensus        45 ~~~~~~~~-~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~---~~~~~~Ll~~~~~~~~~  120 (355)
                      +.++ +.. |. +|+||||+||..|+.++++.|++.|+++ +.+|..|+||||.|+..++   .+.+..+++.   ....
T Consensus        96 ~~dv-n~~~D~-~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~---l~~~  169 (301)
T d1sw6a_          96 QLNL-NIPVDE-HGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDY---LYPC  169 (301)
T ss_dssp             CCCS-CSCCST-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHH---HGGG
T ss_pred             CCCc-CcCcCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHH---Hhhh
Confidence            3444 433 65 8999999999999999999999999998 8899999999999998764   2233444443   2235


Q ss_pred             hccCCCCCCcHHHHHHhcCCc---hH--------HHHHHhccCc------------------------------------
Q 042924          121 INEGDAKGNTPLHVLAAIRPN---EF--------DVDLVRKTQA------------------------------------  153 (355)
Q Consensus       121 ~n~~d~~G~T~Lh~A~~~~~~---~~--------~~~lL~~~ga------------------------------------  153 (355)
                      ++.+|..|+||||.++..+..   ..        ++.++.+.+.                                    
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence            677899999999988874431   11        1222322222                                    


Q ss_pred             -ccccccCCCCcHHHHHhhCCCchHHHHHHHHHHcCCCCCC
Q 042924          154 -NYDAVNKQIVSVRHIFNYGYPELKEEIQKLSKDVGRGQYS  193 (355)
Q Consensus       154 -~~~~~n~~g~Tpl~~a~~~~~~~~~~i~~~l~~~~~~~~~  193 (355)
                       .+|.+|.+|+||||+|+...   ..+++++|.+.|+++..
T Consensus       250 ~~in~~D~~G~TpLh~A~~~g---~~~iv~~Ll~~GAd~~~  287 (301)
T d1sw6a_         250 NMLNAQDSNGDTCLNIAARLG---NISIVDALLDYGADPFI  287 (301)
T ss_dssp             HTTTCCCTTSCCHHHHHHHHC---CHHHHHHHHHTTCCTTC
T ss_pred             cCccCCCCCCCCHHHHHHHcC---CHHHHHHHHHCCCCCCC
Confidence             15888999999999999766   56899999999988754