Citrus Sinensis ID: 042968

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG
Secondary Structure (PSIPRED)
cccHHHHHHcccccHHHHHHccccHHHHcccccccHHcccccHHHHHHHHHHHHcHHHHHHHHHHHccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEcccHHHHHHHHHHHcccHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcc
Coil and Loop (DISEMBL)
MHDKLVFRNLCRSQLkdtileggipfnrahgmhifeyvgldprfnkHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG
Flexible Loop (DISEMBL)
MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG
Low Complexity Region (SEG)
MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG
Disordered region (IsUnstruct)
****LVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLV****
Disordered Region (DISOPRED)
*HDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG
Disordered Region (DISEMBL)
MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG
Disordered Region (DISPRO)
*HDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q9FK25	363	Flavone 3'-O-methyltransf	yes	no	0.839	0.187	0.602	5e-20
Q43047	364	Caffeic acid 3-O-methyltr	N/A	no	0.839	0.186	0.617	7e-20
Q9XGV9	361	Caffeic acid 3-O-methyltr	N/A	no	0.839	0.188	0.588	1e-19
Q43046	365	Caffeic acid 3-O-methyltr	N/A	no	0.827	0.183	0.611	1e-19
Q8W013	363	Caffeic acid 3-O-methyltr	N/A	no	0.839	0.187	0.588	2e-19
Q9SWC2	313	Caffeic acid 3-O-methyltr	N/A	no	0.827	0.214	0.582	3e-19
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.827	0.183	0.597	3e-19
Q8LL87	350	Caffeic acid 3-O-methyltr	N/A	no	0.839	0.194	0.573	4e-19
P46484	366	Caffeic acid 3-O-methyltr	N/A	no	0.827	0.183	0.582	4e-19
P28002	365	Caffeic acid 3-O-methyltr	N/A	no	0.839	0.186	0.573	4e-19

>sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/68 (60%), Positives = 51/68 (75%)

Query: 14  QLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNI 73
            LKD IL+GGIPFN+A+GM  FEY G DPRFNK FN  M N++++ M  I E+YKGF+ +
Sbjct: 140 HLKDAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKGFEGL 199

Query: 74  KQLVDVGG 81
             LVDVGG
Sbjct: 200 TSLVDVGG 207

Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 6

>sp|Q43047|COMT3_POPKI Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 50/68 (73%)

Query: 14  QLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNI 73
            LKD ILEGGIPFN+A+GM  FEY G DPRFNK FN  M +++ + M  I ESYKGF+ +
Sbjct: 141 HLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSKMAMKKILESYKGFEGL 200

Query: 74  KQLVDVGG 81
             LVDVGG
Sbjct: 201 ASLVDVGG 208

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/68 (58%), Positives = 51/68 (75%)

Query: 14  QLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNI 73
            LKD +L+GGIPFN+A+GM  FEY G DPRFNK FN  M N++++ M  I E+Y GFD +
Sbjct: 140 HLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILETYTGFDGL 199

Query: 74  KQLVDVGG 81
           K +VDVGG
Sbjct: 200 KTVVDVGG 207

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 51/67 (76%)

Query: 15  LKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIK 74
           LKD ILEGGIPFN+A+GM  FEY G DPRFNK FN  M +++++ M  I E+YKGF+ + 
Sbjct: 143 LKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEGLT 202

Query: 75  QLVDVGG 81
            LVDVGG
Sbjct: 203 SLVDVGG 209

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/68 (58%), Positives = 51/68 (75%)

Query: 14  QLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNI 73
            LKD +LEGGIPFN+A+GM  FEY G DPRFNK FN  M N+++++M  I E Y+GF  +
Sbjct: 142 HLKDAVLEGGIPFNKAYGMTAFEYHGKDPRFNKVFNQGMSNHSTIIMKKILEIYQGFQGL 201

Query: 74  KQLVDVGG 81
           K +VDVGG
Sbjct: 202 KTVVDVGG 209

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9SWC2|COMT1_EUCGL Caffeic acid 3-O-methyltransferase (Fragment) OS=Eucalyptus globulus GN=COMT1 PE=3 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 53/67 (79%)

Query: 15  LKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIK 74
           +KD ILEGGIPF++AHGM  F+Y G DPRFNK FN AM ++++++M  I E+Y GF+ +K
Sbjct: 125 MKDAILEGGIPFHKAHGMTAFDYPGTDPRFNKIFNRAMSDHSTIMMKKILETYNGFEGLK 184

Query: 75  QLVDVGG 81
            +VDVGG
Sbjct: 185 TVVDVGG 191

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Eucalyptus globulus (taxid: 34317)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/67 (59%), Positives = 51/67 (76%)

Query: 15  LKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIK 74
           LKD IL+GGIPFN+A+GM  FEY G DPRFNK FN  M +++++ M  I E+YKGF+ + 
Sbjct: 143 LKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEGLT 202

Query: 75  QLVDVGG 81
            LVDVGG
Sbjct: 203 SLVDVGG 209

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 51/68 (75%)

Query: 14  QLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNI 73
            LKD +L+GGIPFN+A+GM  FEY G DPRFNK FN  M N++++ M  I E Y+GF+ +
Sbjct: 129 HLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVYRGFEGL 188

Query: 74  KQLVDVGG 81
           K +VDVGG
Sbjct: 189 KTVVDVGG 196

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|P46484|COMT1_EUCGU Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 52/67 (77%)

Query: 15  LKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIK 74
           LKD +LEGGIPFN+A+GM  FEY G DPRFNK FN  M +++++ M  I E+YKGF+ ++
Sbjct: 144 LKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKIFNRGMSDHSTITMKKILETYKGFEGLE 203

Query: 75  QLVDVGG 81
            +VDVGG
Sbjct: 204 TVVDVGG 210

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Eucalyptus gunnii (taxid: 3933)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 51/68 (75%)

Query: 14  QLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNI 73
            LKD +L+GGIPFN+A+GM  FEY G DPRFNK FN  M +++++ M  I E+Y GF+ +
Sbjct: 142 HLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL 201

Query: 74  KQLVDVGG 81
           K LVDVGG
Sbjct: 202 KSLVDVGG 209

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
145695037	353	O-methyltransferase [Citrus sinensis x C	0.975	0.223	0.802	2e-31
224128073	358	catechol o-methyltransferase related [Po	0.851	0.192	0.652	6e-22
224068173	359	catechol o-methyltransferase [Populus tr	0.975	0.220	0.580	7e-22
225453640	359	PREDICTED: quercetin 3-O-methyltransfera	0.851	0.192	0.637	2e-21
225453636	358	PREDICTED: quercetin 3-O-methyltransfera	0.851	0.192	0.637	2e-21
147785075	382	hypothetical protein VITISV_028012 [Viti	0.851	0.180	0.637	2e-21
296089019	280	unnamed protein product [Vitis vinifera]	0.851	0.246	0.637	4e-21
284437809	377	O-methyltransferase-like protein [Prunus	0.851	0.183	0.647	6e-21
296089018	221	unnamed protein product [Vitis vinifera]	0.851	0.312	0.637	6e-20
224068181	336	catechol o-methyltransferase [Populus tr	0.851	0.205	0.637	7e-20

>gi|145695037|gb|ABP94018.1| O-methyltransferase [Citrus sinensis x Citrus reticulata]

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 72/81 (88%), Gaps = 2/81 (2%)

Query: 1   MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM 60
           + DK+  ++   SQLKD ILEGGIPFNRAHG+H+FEY GLDP+FNKHFNTAMYNYTSLVM
Sbjct: 121 VQDKVFLKSW--SQLKDAILEGGIPFNRAHGVHVFEYTGLDPKFNKHFNTAMYNYTSLVM 178

Query: 61  SNIRESYKGFDNIKQLVDVGG 81
           SNI ESYKGFDNIKQLVDVGG
Sbjct: 179 SNILESYKGFDNIKQLVDVGG 199

Source: Citrus sinensis x Citrus reticulata

Species: Citrus sinensis x Citrus reticulata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128073|ref|XP_002320237.1| catechol o-methyltransferase related [Populus trichocarpa] gi|118481911|gb|ABK92890.1| unknown [Populus trichocarpa] gi|222861010|gb|EEE98552.1| catechol o-methyltransferase related [Populus trichocarpa]

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/69 (65%), Positives = 57/69 (82%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
           SQLKD +LEGG+ F+R HG H FEY GLDPRFN+ FNTAMYN T++V+ N+ E+Y GF N
Sbjct: 136 SQLKDAVLEGGVAFDRVHGAHAFEYPGLDPRFNQVFNTAMYNQTTVVLENMLEAYTGFKN 195

Query: 73  IKQLVDVGG 81
           +KQLV++GG
Sbjct: 196 LKQLVEIGG 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068173|ref|XP_002302676.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844402|gb|EEE81949.1| catechol o-methyltransferase [Populus trichocarpa]

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 63/81 (77%), Gaps = 2/81 (2%)

Query: 1   MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM 60
           +H+ ++ ++   SQLKD +LEGG+ F+R HG+H FEY GLDPRFN+ FNTAMYN T++V 
Sbjct: 126 IHENVILQSW--SQLKDAVLEGGVAFHRVHGVHAFEYNGLDPRFNQVFNTAMYNQTTVVN 183

Query: 61  SNIRESYKGFDNIKQLVDVGG 81
            N+ E Y GF N+KQLVD+GG
Sbjct: 184 GNMLEKYNGFKNLKQLVDIGG 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453640|ref|XP_002267179.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera] gi|147785074|emb|CAN75449.1| hypothetical protein VITISV_028011 [Vitis vinifera]

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/69 (63%), Positives = 59/69 (85%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
           SQLK+ I+EGGIPFNR HG H FEY G DPRFN+ FNTAM+N+T+++++ I ESYKGF++
Sbjct: 137 SQLKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTIIVNKILESYKGFEH 196

Query: 73  IKQLVDVGG 81
           + ++VDVGG
Sbjct: 197 LTRVVDVGG 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453636|ref|XP_002266899.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera]

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/69 (63%), Positives = 59/69 (85%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
           SQLK+ I+EGGIPFNR HG H FEY G DPRFN+ FNTAM+N+T+++++ I ESYKGF++
Sbjct: 136 SQLKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTVIVNKILESYKGFEH 195

Query: 73  IKQLVDVGG 81
           + ++VDVGG
Sbjct: 196 LTRVVDVGG 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785075|emb|CAN75450.1| hypothetical protein VITISV_028012 [Vitis vinifera]

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/69 (63%), Positives = 59/69 (85%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
           SQLK+ I+EGGIPFNR HG H FEY G DPRFN+ FNTAM+N+T+++++ I ESYKGF++
Sbjct: 136 SQLKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTVIVNKILESYKGFEH 195

Query: 73  IKQLVDVGG 81
           + ++VDVGG
Sbjct: 196 LTRVVDVGG 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089019|emb|CBI38722.3| unnamed protein product [Vitis vinifera]

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/69 (63%), Positives = 59/69 (85%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
           SQLK+ I+EGGIPFNR HG H FEY G DPRFN+ FNTAM+N+T+++++ I ESYKGF++
Sbjct: 58  SQLKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTIIVNKILESYKGFEH 117

Query: 73  IKQLVDVGG 81
           + ++VDVGG
Sbjct: 118 LTRVVDVGG 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284437809|gb|ADB85561.1| O-methyltransferase-like protein [Prunus mume]

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/71 (64%), Positives = 57/71 (80%), Gaps = 2/71 (2%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFD- 71
           SQLKD ++EGGIPFNR HGMH FEY GLDPRFN+ FNTAM+N+T++V+  +   YKG + 
Sbjct: 153 SQLKDAVVEGGIPFNRVHGMHAFEYPGLDPRFNQVFNTAMFNHTTIVIKKLLHIYKGLED 212

Query: 72  -NIKQLVDVGG 81
            N+ QLVDVGG
Sbjct: 213 KNLTQLVDVGG 223

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089018|emb|CBI38721.3| unnamed protein product [Vitis vinifera]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 59/69 (85%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
           SQLK+ I+EGGIPFNR HG H FEY G DPRFN+ FNTAM+N+T+++++ I ESYKGF++
Sbjct: 57  SQLKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTVIVNKILESYKGFEH 116

Query: 73  IKQLVDVGG 81
           + ++VDVGG
Sbjct: 117 LTRVVDVGG 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068181|ref|XP_002302677.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844403|gb|EEE81950.1| catechol o-methyltransferase [Populus trichocarpa]

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/69 (63%), Positives = 55/69 (79%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
           SQLKD +LEGG+ F+R HG+H FEY GLDP+FN+ FNTAMYN T++V   + E Y GF N
Sbjct: 113 SQLKDAVLEGGVAFHRVHGVHGFEYNGLDPKFNQVFNTAMYNQTTVVNGFMLEKYNGFKN 172

Query: 73  IKQLVDVGG 81
           +KQLVD+GG
Sbjct: 173 LKQLVDIGG 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.827	0.184	0.611	1.4e-18
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.827	0.186	0.537	2.6e-16
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.827	0.182	0.507	3e-14
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.975	0.207	0.432	3.3e-13
TAIR|locus:2204695	381	AT1G77530 [Arabidopsis thalian	0.975	0.207	0.407	5.5e-13
TAIR|locus:2038026	352	AT1G33030 [Arabidopsis thalian	0.827	0.190	0.462	7.2e-13
TAIR|locus:2199607	373	IGMT1 "indole glucosinolate O-	0.901	0.195	0.506	1.1e-12
TAIR|locus:2164087	378	AT5G53810 [Arabidopsis thalian	0.851	0.182	0.478	1.9e-12
TAIR|locus:2199597	373	IGMT3 "indole glucosinolate O-	0.901	0.195	0.493	3.9e-12
TAIR|locus:2199587	373	IGMT2 "indole glucosinolate O-	0.901	0.195	0.493	3.9e-12

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 41/67 (61%), Positives = 51/67 (76%)

Query:    15 LKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIK 74
             LKD IL+GGIPFN+A+GM  FEY G DPRFNK FN  M N++++ M  I E+YKGF+ + 
Sbjct:   141 LKDAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKGFEGLT 200

Query:    75 QLVDVGG 81
              LVDVGG
Sbjct:   201 SLVDVGG 207

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 206 (77.6 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 36/67 (53%), Positives = 49/67 (73%)

Query:    15 LKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIK 74
             LKD +L+GGIPFN+A+GM  FEY G DPRFN+ FN  M N++ ++   + E YKGF+ + 
Sbjct:   140 LKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLEVYKGFEGLG 199

Query:    75 QLVDVGG 81
              +VDVGG
Sbjct:   200 TIVDVGG 206

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 188 (71.2 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 34/67 (50%), Positives = 46/67 (68%)

Query:    15 LKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIK 74
             LKD +L+GGIPFN+A+GM  FEY G D RFN+ FN  M N++ ++   + + Y GFD   
Sbjct:   147 LKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDLYTGFDAAS 206

Query:    75 QLVDVGG 81
              +VDVGG
Sbjct:   207 TVVDVGG 213

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 35/81 (43%), Positives = 52/81 (64%)

Query:     1 MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM 60
             +H ++ F+    + LKD ILEG   FN AHGM IFEY+  D  F + FN AM   ++++M
Sbjct:   148 LHTQVFFKTW--TNLKDVILEGRDAFNSAHGMKIFEYINSDQPFAELFNRAMSEPSTMIM 205

Query:    61 SNIRESYKGFDNIKQLVDVGG 81
               + + Y+GF+++  LVDVGG
Sbjct:   206 KKVLDVYRGFEDVNTLVDVGG 226

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 5.5e-13, P = 5.5e-13
 Identities = 33/81 (40%), Positives = 53/81 (65%)

Query:     1 MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM 60
             +H +++ +    + LKD ILEG   F+ AH M +FEY+  D +F+K F+ AM   +++VM
Sbjct:   148 LHSQVILKTW--TNLKDVILEGKDAFSSAHDMRLFEYISSDDQFSKLFHRAMSESSTMVM 205

Query:    61 SNIRESYKGFDNIKQLVDVGG 81
               + E Y+GF+++  LVDVGG
Sbjct:   206 KKVLEEYRGFEDVNTLVDVGG 226

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 7.2e-13, P = 7.2e-13
 Identities = 31/67 (46%), Positives = 43/67 (64%)

Query:    15 LKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIK 74
             LKD++LEGG+PFN  HG    E VG D RF + F ++M  +  + +    ++Y GFD +K
Sbjct:   129 LKDSVLEGGLPFNNTHGSSAVELVGSDSRFREVFQSSMKGFNEVFIEEFLKNYNGFDGVK 188

Query:    75 QLVDVGG 81
              LVDVGG
Sbjct:   189 SLVDVGG 195

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 39/77 (50%), Positives = 49/77 (63%)

Query:     6 VFRNLCRSQLKDTILEGGIPFNRAHG-MHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIR 64
             VF N   +QLKD +LEGG  F RAHG M +F+Y+G D RF+K FN     +T  V+    
Sbjct:   145 VFLNTW-AQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQT--GFTIAVVKKAL 201

Query:    65 ESYKGFDNIKQLVDVGG 81
             E Y+GF  +K LVDVGG
Sbjct:   202 EVYEGFKGVKVLVDVGG 218

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA;IDA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042343 "indole glucosinolate metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 33/69 (47%), Positives = 46/69 (66%)

Query:    13 SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
             + L+D ILEG   F+ AHGM +FEY+  D RF K FN AM   +++V   + + Y+GF +
Sbjct:   155 THLEDVILEGRDAFSSAHGMKLFEYIQADERFGKVFNRAMLESSTMVTEKVLKFYEGFKD 214

Query:    73 IKQLVDVGG 81
             +K LVDVGG
Sbjct:   215 VKTLVDVGG 223

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199597 IGMT3 "indole glucosinolate O-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 38/77 (49%), Positives = 48/77 (62%)

Query:     6 VFRNLCRSQLKDTILEGGIPFNRAHG-MHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIR 64
             VF N   +QLKD +LEGG  F RAHG M +F+Y+G D RF+K FN     +T  V+    
Sbjct:   145 VFLNTW-AQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQT--GFTIAVVKKAL 201

Query:    65 ESYKGFDNIKQLVDVGG 81
             E Y+GF  +  LVDVGG
Sbjct:   202 EVYQGFKGVNVLVDVGG 218

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199587 IGMT2 "indole glucosinolate O-methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 38/77 (49%), Positives = 48/77 (62%)

Query:     6 VFRNLCRSQLKDTILEGGIPFNRAHG-MHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIR 64
             VF N   +QLKD +LEGG  F RAHG M +F+Y+G D RF+K FN     +T  V+    
Sbjct:   145 VFLNTW-AQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQT--GFTIAVVKKAL 201

Query:    65 ESYKGFDNIKQLVDVGG 81
             E Y+GF  +  LVDVGG
Sbjct:   202 EVYQGFKGVNVLVDVGG 218

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA;IDA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042343 "indole glucosinolate metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: COMT5 catechol o-methyltransferase (359 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	81
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	8e-25

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score = 91.9 bits (229), Expect = 8e-25
 Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 1   MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM 60
             D  +      + LKD + EGG PF RA GM  FEY+G DP FN+ FN AM  ++ LVM
Sbjct: 32  YADPTLLE--SWAHLKDAVREGGPPFERAFGMPFFEYLGADPEFNRVFNRAMAAHSRLVM 89

Query: 61  SNIRESYKGFDNIKQLVDVGG 81
             I E+   F  +  LVDVGG
Sbjct: 90  KKILETAFDFSGLSSLVDVGG 110

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.65
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.35
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	97.48
PRK06922	677	hypothetical protein; Provisional	91.55
PF09959	499	DUF2193: Uncharacterized protein conserved in arch	81.71

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.65  E-value=1.4e-16  Score=103.99  Aligned_cols=77  Identities=34%  Similarity=0.625  Sum_probs=69.4

Q ss_pred             CCccccccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhH-HHHHHhCCCCCCCCeEEecC
Q 042968            2 HDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM-SNIRESYKGFDNIKQLVDVG   80 (81)
Q Consensus         2 ~~~~~~~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~-~~~~~~~d~~~~~~~lvDVG   80 (81)
                      ..+..|.+  |.+|.+++|+|+++|+.++|.++|+|++++|+..+.|+.+|+..+.... +.+++.++ |++.++|||||
T Consensus        32 ~~~~~~~~--~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d-~~~~~~vvDvG  108 (241)
T PF00891_consen   32 ISPELYPA--WFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD-FSGFKTVVDVG  108 (241)
T ss_dssp             TCHHHHHG--GGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST-TTTSSEEEEET
T ss_pred             cCHHHHHH--HHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc-ccCccEEEecc
Confidence            35677889  9999999999999999999999999999999999999999999998887 88899999 99999999999


Q ss_pred             C
Q 042968           81 G   81 (81)
Q Consensus        81 G   81 (81)
                      |
T Consensus       109 G  109 (241)
T PF00891_consen  109 G  109 (241)
T ss_dssp             -
T ss_pred             C
Confidence            7

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.35  E-value=1.2e-12  Score=89.67  Aligned_cols=78  Identities=46%  Similarity=0.729  Sum_probs=73.5

Q ss_pred             CCccccccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968            2 HDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus         2 ~~~~~~~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      +++..++.  |..|.++++.|..+|..+||+.+|+|...++.....|+++|...+....+.+++.|.+|+++.++|||||
T Consensus       109 ~~~v~~~~--w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGg  186 (342)
T KOG3178|consen  109 TSKVIMNT--WQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGG  186 (342)
T ss_pred             cccchhhh--HHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCC
Confidence            45677888  9999999999999999999998999999999999999999999999999999999977999999999997

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=97.48  E-value=0.00033  Score=47.32  Aligned_cols=62  Identities=19%  Similarity=0.328  Sum_probs=40.1

Q ss_pred             ccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHh-hchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968           12 RSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMY-NYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus        12 w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~-~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      |.+|.+++| ++++|+..+     ++-...++. ..|.+.|. .......+.+++..+ +++..+|+||||
T Consensus        96 ~~~l~~~~r-~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~  158 (306)
T TIGR02716        96 YMGLSQAVR-GQKNFKGQV-----PYPPVTRED-NLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGG  158 (306)
T ss_pred             HHhHHHHhc-CCccccccc-----CCCCCCHHH-HHhHHHHHHhcchhHHHHHHHHcC-CCCCCEEEEeCC
Confidence            888999998 444454322     222233333 34555554 444445677888898 999999999996

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK06922 hypothetical protein; Provisional

Probab=91.55  E-value=0.31  Score=36.95  Aligned_cols=49  Identities=18%  Similarity=0.333  Sum_probs=36.2

Q ss_pred             CcchhhccCCchHHHHHHHHHhhchhhh--HHHHHHhCCCCCCCCeEEecCC
Q 042968           32 MHIFEYVGLDPRFNKHFNTAMYNYTSLV--MSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus        32 ~~~f~~~~~~p~~~~~F~~~M~~~s~~~--~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      ..+|+++..+|+..++|.+.|.......  .......++ +....+|+|||+
T Consensus       377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGC  427 (677)
T PRK06922        377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGA  427 (677)
T ss_pred             hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCC
Confidence            4679999999999999998887754432  222344566 777789999984

>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function

Probab=81.71  E-value=1.9  Score=31.12  Aligned_cols=71  Identities=27%  Similarity=0.355  Sum_probs=49.5

Q ss_pred             cccccccchHHHHhcCCCccccccCCc-chhhc-cCCchHHH---HHHHHHhhchhhhHHHHHHhCCCCCCCCeEEec
Q 042968            7 FRNLCRSQLKDTILEGGIPFNRAHGMH-IFEYV-GLDPRFNK---HFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDV   79 (81)
Q Consensus         7 ~~~~~w~~l~~~lr~g~~~f~~~~g~~-~f~~~-~~~p~~~~---~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDV   79 (81)
                      |..  ...|+++||-...+|-.-+..+ +-|.| ++||.+++   .|.++......+.....++.|.+|=+-..|||.
T Consensus        68 yei--L~~LT~tvrPeDDPFVEhyQTP~ilEILy~eD~~F~ks~~kfi~~I~~sealIg~E~~RrygGFYGpTcVvDF  143 (499)
T PF09959_consen   68 YEI--LKSLTDTVRPEDDPFVEHYQTPAILEILYEEDPAFRKSVEKFIEAIGKSEALIGKESARRYGGFYGPTCVVDF  143 (499)
T ss_pred             HHH--HHHHhcccCCCCCchHhhccccHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHhhHHHHHHhcCccCCceeeee
Confidence            445  5678888887677777666654 45665 46887764   455555555666677888999778888899985

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	81
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		3e-20
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		6e-18
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		2e-17
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		2e-07
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		4e-05

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 51/68 (75%)
Query: 14  QLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNI 73
            LKD +L+GGIPFN+A+GM  FEY G DPRFNK FN  M +++++ M  I E+Y GF+ +
Sbjct: 142 HLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL 201
Query: 74  KQLVDVGG 81
           K LVDVGG
Sbjct: 202 KSLVDVGG 209

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 48/67 (71%)
Query: 15  LKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIK 74
           LKD +L+GGIPFN+A+GM  FEY G DPRFN+ FN  M N++ ++   + E Y GF+ + 
Sbjct: 144 LKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLG 203
Query: 75  QLVDVGG 81
            LVDVGG
Sbjct: 204 TLVDVGG 210

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/67 (55%), Positives = 48/67 (71%)
Query: 15  LKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIK 74
           LKD ILEGGIPFN+A+GM+IF+Y G D R NK FN  M + +++ M  I E Y GF+ + 
Sbjct: 146 LKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLT 205
Query: 75  QLVDVGG 81
            +VDVGG
Sbjct: 206 TIVDVGG 212

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 26  FNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG 81
           F   HG+  +E++G D + N+ FN +M +  +  M  + E Y GF+ I  LVDVGG
Sbjct: 163 FKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGG 218

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 26  FNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG 81
           F   HG+  +E+ G D + N+ FN +  +  +       E Y GF+ I  LVDVGG
Sbjct: 163 FKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGFEGISTLVDVGG 218

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	81
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	1e-24
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	7e-24
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	1e-23
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	3e-22
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	1e-21
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	2e-21
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	2e-21
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	3e-21
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	4e-21
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	1e-20
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	1e-16
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	4e-12
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	2e-10
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	4e-10
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	6e-10

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score = 93.3 bits (232), Expect = 1e-24
 Identities = 36/69 (52%), Positives = 48/69 (69%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
             LKD +L+GGIPFN+A+GM  FEY G DPRFN+ FN  M N++ ++   + E Y GF+ 
Sbjct: 142 YYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEG 201

Query: 73  IKQLVDVGG 81
           +  LVDVGG
Sbjct: 202 LGTLVDVGG 210

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score = 91.0 bits (226), Expect = 7e-24
 Identities = 37/69 (53%), Positives = 48/69 (69%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
             LKD ILEGGIPFN+A+GM+IF+Y G D R NK FN  M + +++ M  I E Y GF+ 
Sbjct: 144 FYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEG 203

Query: 73  IKQLVDVGG 81
           +  +VDVGG
Sbjct: 204 LTTIVDVGG 212

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score = 90.6 bits (225), Expect = 1e-23
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 13  SQLKDTILEGGI-PFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFD 71
            +LK  I E  +  F    G   ++++  +P +N  FN AM + + L+   +R+    FD
Sbjct: 128 HELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFD 187

Query: 72  NIKQLVDVGG 81
            ++ +VDVGG
Sbjct: 188 GLESIVDVGG 197

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score = 86.8 bits (215), Expect = 3e-22
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 13  SQLKDTILEGGI-PFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFD 71
              K+ +++  I  F   HG+  +E++G D + N+ FN +M +  +  M  + E Y GF+
Sbjct: 149 MNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFE 208

Query: 72  NIKQLVDVGG 81
            I  LVDVGG
Sbjct: 209 GISTLVDVGG 218

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score = 84.7 bits (210), Expect = 1e-21
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
           ++L D I  G   +   +G   +E +   P     F++ +     +       +Y  + N
Sbjct: 125 TRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAY-DWTN 183

Query: 73  IKQLVDVGG 81
           ++ ++DVGG
Sbjct: 184 VRHVLDVGG 192

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score = 84.7 bits (210), Expect = 2e-21
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 1   MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM 60
           ++  +   +L  + L D +  G   +   +G   +E +  D      F+  M     L  
Sbjct: 112 LNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAY 171

Query: 61  SNIRESYKGFDNIKQLVDVGG 81
               ++Y  +  ++ ++DVGG
Sbjct: 172 EAPADAYD-WSAVRHVLDVGG 191

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score = 84.3 bits (209), Expect = 2e-21
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
            QL  ++  G   F+ A+G   ++    DP+  + FN AM + +      +  +Y  F  
Sbjct: 144 EQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSG 202

Query: 73  IKQLVDVGG 81
               VD+GG
Sbjct: 203 AATAVDIGG 211

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score = 83.5 bits (207), Expect = 3e-21
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 1   MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM 60
           M+  +   +L   +L  +I  G   +   +G   +E +G DP  +  F+T M ++  L  
Sbjct: 99  MNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDY 158

Query: 61  SNIRESYKGFDNIKQLVDVGG 81
           + I   Y  +  +  +VDVGG
Sbjct: 159 TGIAAKYD-WAALGHVVDVGG 178

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score = 83.5 bits (207), Expect = 4e-21
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 1/69 (1%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
            ++   +      F    G  +  Y   D      +   M   ++     +  +   F  
Sbjct: 126 HRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAG-DFPA 184

Query: 73  IKQLVDVGG 81
              + DVGG
Sbjct: 185 TGTVADVGG 193

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score = 82.6 bits (204), Expect = 1e-20
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 13  SQLKDTILEGG--IPFNRAHGMHIFEYVGLDPRFN--KHFNTAMYNYTSLVMSNIRESYK 68
           S  K    E      F  A G   ++++  D   +    F  AM + + +    ++E+ +
Sbjct: 130 SSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKR 189

Query: 69  GFDNIKQLVDVGG 81
            F+ ++ LVDVGG
Sbjct: 190 VFEGLESLVDVGG 202

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score = 71.1 bits (175), Expect = 1e-16
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 13  SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
           +   + +L G   F  A G   + Y+   P   + F  AM   ++L    I      F  
Sbjct: 111 TPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLL-DFRG 168

Query: 73  IKQLVDVGG 81
            +  VDVGG
Sbjct: 169 -RSFVDVGG 176

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score = 58.5 bits (142), Expect = 4e-12
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 1   MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM 60
            H  L + N    +L + +        +            D R    FN AM   +  ++
Sbjct: 116 EHQYLQWDNW--PRLGEILRSE-----KPLAFQQESRFAHDTRARDAFNDAMVRLSQPMV 168

Query: 61  SNIRESYKGFDNIKQLVDVGG 81
             + E    F   + ++D+ G
Sbjct: 169 DVVSELG-VFARARTVIDLAG 188

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score = 53.6 bits (129), Expect = 2e-10
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 7/71 (9%)

Query: 11  CRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGF 70
               L    + G   F          Y  +    N +F     +     +  + E  K  
Sbjct: 136 FYMGLSQA-VRGQKNFK-----GQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-L 188

Query: 71  DNIKQLVDVGG 81
           D +K+++DVGG
Sbjct: 189 DGVKKMIDVGG 199

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 53.2 bits (128), Expect = 4e-10
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 1   MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMH--IFEYVGLDPRFNKHFNTAMYNYTSL 58
            +  + ++ L    L++ +L G     +  G    I+E +   P   +       ++ S 
Sbjct: 108 FNHDVNYQGL--FHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSD 165

Query: 59  VMSNIRESYKGFDNIKQLVDVGG 81
                        + K+L+D+GG
Sbjct: 166 QSFGKALEIVFSHHPKRLLDIGG 188

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score = 52.4 bits (126), Expect = 6e-10
 Identities = 12/81 (14%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 1   MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM 60
           +   ++      + L   +L+GG   +    +       +  +F K  +  M N   L+ 
Sbjct: 101 LLSPMITNGF--NDLTAAVLKGGTAISSEGTL--SPEHPVWVQFAKAMSPMMANPAQLIA 156

Query: 61  SNIRESYKGFDNIKQLVDVGG 81
             + E+    + +K ++D+  
Sbjct: 157 QLVNEN--KIEPLK-VLDISA 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.53
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.53
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.47
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.47
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.39
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.38
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.36
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.34
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.33
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.32
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.17
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.15
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.9
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.88
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.85
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.43
4dyq_A	140	Gene 1 protein; GP1, octamer, DNA-binding, viral p	86.04
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	85.7

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.53  E-value=1.1e-14  Score=98.93  Aligned_cols=77  Identities=49%  Similarity=0.902  Sum_probs=71.3

Q ss_pred             CccccccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968            3 DKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus         3 ~~~~~~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      ++.++.+  |.+|.+++|+|+++|+.++|.++|+|+.++|+..+.|+++|...+....+.+++.+++|++..+||||||
T Consensus       134 ~~~~~~~--~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~  210 (364)
T 3p9c_A          134 DKVLMES--WYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGG  210 (364)
T ss_dssp             SHHHHGG--GGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETC
T ss_pred             CHHHHHH--HhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCC
Confidence            4667889  9999999999999999999999999999999999999999999998888899999965888899999996

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.53  E-value=1.2e-14  Score=98.68  Aligned_cols=77  Identities=51%  Similarity=0.886  Sum_probs=71.1

Q ss_pred             CccccccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968            3 DKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus         3 ~~~~~~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      ++.++.+  |.+|.+++|+|+++|+.++|.++|+|+.++|+..+.|+++|...+....+.+++.+++|++..+|+||||
T Consensus       136 ~~~~~~~--~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~  212 (368)
T 3reo_A          136 DKVLLEP--WFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGG  212 (368)
T ss_dssp             CHHHHGG--GGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETC
T ss_pred             CHHHHhh--hhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCC
Confidence            4667889  9999999999999999999999999999999999999999999998888899999965888899999996

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.47  E-value=2.7e-14  Score=96.08  Aligned_cols=76  Identities=14%  Similarity=0.216  Sum_probs=70.8

Q ss_pred             CccccccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968            3 DKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus         3 ~~~~~~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      ++..+++  |.+|++++|+|+++|+..+|.++|+|+.++|+..+.|+++|...+....+.+++.++ |++..+|+||||
T Consensus       118 ~~~~~~~--~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~  193 (348)
T 3lst_A          118 DTMFWTM--SHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGG  193 (348)
T ss_dssp             SHHHHHH--HHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETC
T ss_pred             CHHHHHH--HHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECC
Confidence            3446788  999999999999999999999999999999999999999999999988899999999 999999999996

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.47  E-value=3.5e-14  Score=96.12  Aligned_cols=75  Identities=17%  Similarity=0.302  Sum_probs=69.2

Q ss_pred             ccccccccccchHHHHhcCCCccccccCC---cchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecC
Q 042968            4 KLVFRNLCRSQLKDTILEGGIPFNRAHGM---HIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVG   80 (81)
Q Consensus         4 ~~~~~~~~w~~l~~~lr~g~~~f~~~~g~---~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVG   80 (81)
                      +..|++  |.+|.+++|+|+++|..++|.   ++|+++.++|+....|+++|...+....+.+++.|| |++..+|||||
T Consensus       111 ~~~~~~--~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvG  187 (353)
T 4a6d_A          111 RTSYRC--WGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLG  187 (353)
T ss_dssp             HTHHHH--HTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEET
T ss_pred             HHHHHH--HHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeC
Confidence            345778  999999999999999999984   579999999999999999999999998999999999 99999999999


Q ss_pred             C
Q 042968           81 G   81 (81)
Q Consensus        81 G   81 (81)
                      |
T Consensus       188 g  188 (353)
T 4a6d_A          188 G  188 (353)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.39  E-value=2.6e-13  Score=92.00  Aligned_cols=74  Identities=26%  Similarity=0.457  Sum_probs=69.6

Q ss_pred             cccccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968            5 LVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus         5 ~~~~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      ..+..  |.+|.+++|+|+++|+..+|.++|+|+.++|+..+.|+++|...+....+.+++.++ |++..+||||||
T Consensus       138 ~~~~~--~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~  211 (369)
T 3gwz_A          138 WHWRA--WEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGG  211 (369)
T ss_dssp             HHHHH--HHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETC
T ss_pred             HHHHH--HHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCC
Confidence            45678  999999999999999999999999999999999999999999999888899999999 999999999996

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.38  E-value=6.2e-13  Score=90.10  Aligned_cols=76  Identities=30%  Similarity=0.584  Sum_probs=55.7

Q ss_pred             ccccccccccchHHHHhcC-CCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968            4 KLVFRNLCRSQLKDTILEG-GIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus         4 ~~~~~~~~w~~l~~~lr~g-~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      +.++.+  |.+|+++||+| +++|+.++|.++|+|+.++|+..+.|+++|...+....+.+++.|+.|++..+|+||||
T Consensus       142 ~~~~~~--~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~  218 (372)
T 1fp1_D          142 PALLQV--WMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGG  218 (372)
T ss_dssp             HHHHHH--HTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETC
T ss_pred             chHHHH--HHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCC
Confidence            456778  99999999998 89999999999999999999999999999999988888899999954888899999996

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.36  E-value=1.6e-13  Score=91.52  Aligned_cols=71  Identities=27%  Similarity=0.440  Sum_probs=67.1

Q ss_pred             ccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968            8 RNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus         8 ~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      ..  |.+|++++|+|+++|+..+|.++|+|+.++|+..+.|+++|...+....+.+++.++ |++..+|+||||
T Consensus       108 ~~--~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~  178 (332)
T 3i53_A          108 LG--FVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGG  178 (332)
T ss_dssp             GG--GGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC-CGGGSEEEEETC
T ss_pred             HH--HHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC-CCCCCEEEEeCC
Confidence            77  999999999999999999999999999999999999999999998887888999999 999999999996

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.34  E-value=1.1e-12  Score=87.22  Aligned_cols=69  Identities=26%  Similarity=0.450  Sum_probs=65.0

Q ss_pred             ccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968            8 RNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus         8 ~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      ..  |.+|++++|+|+++|+..+|.++|+|+.++|+..+.|+++| ..+....+.+++.++ |++ .+|+|||+
T Consensus       108 ~~--~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~  176 (334)
T 2ip2_A          108 AA--WTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGG  176 (334)
T ss_dssp             HH--TTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETC
T ss_pred             hH--HHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCC
Confidence            67  99999999999999999999999999999999999999999 888887899999999 999 99999996

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.33  E-value=6.2e-13  Score=89.63  Aligned_cols=75  Identities=23%  Similarity=0.325  Sum_probs=67.3

Q ss_pred             CccccccccccchHHHHhcC--CCccccccCCcchhhccCCchHHH--HHHHHHhhchhhhHHHHHHhC--CCCCCCCeE
Q 042968            3 DKLVFRNLCRSQLKDTILEG--GIPFNRAHGMHIFEYVGLDPRFNK--HFNTAMYNYTSLVMSNIRESY--KGFDNIKQL   76 (81)
Q Consensus         3 ~~~~~~~~~w~~l~~~lr~g--~~~f~~~~g~~~f~~~~~~p~~~~--~F~~~M~~~s~~~~~~~~~~~--d~~~~~~~l   76 (81)
                      ++.++.+  |.+|++++|+|  .++|+.++|.++|+|+.++|+..+  .|+++|...+.... .+++.|  + |++..+|
T Consensus       122 ~~~~~~~--~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~-~~~~~~v  197 (358)
T 1zg3_A          122 HPSSLDM--WSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQENKRV-FEGLESL  197 (358)
T ss_dssp             SHHHHGG--GGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHH-HHTCSEE
T ss_pred             CcHHHHH--HHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcchh-ccCCCEE
Confidence            3456788  99999999998  788999999999999999999999  99999999988766 889999  6 8888999


Q ss_pred             EecCC
Q 042968           77 VDVGG   81 (81)
Q Consensus        77 vDVGG   81 (81)
                      |||||
T Consensus       198 lDvG~  202 (358)
T 1zg3_A          198 VDVGG  202 (358)
T ss_dssp             EEETC
T ss_pred             EEECC
Confidence            99996

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.32  E-value=8.7e-13  Score=88.72  Aligned_cols=75  Identities=28%  Similarity=0.458  Sum_probs=67.7

Q ss_pred             CccccccccccchHHHHh-cCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhC--CCCCCCCeEEec
Q 042968            3 DKLVFRNLCRSQLKDTIL-EGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESY--KGFDNIKQLVDV   79 (81)
Q Consensus         3 ~~~~~~~~~w~~l~~~lr-~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~--d~~~~~~~lvDV   79 (81)
                      ++.++.+  |.+|++++| +|+++|+.++|.++|+|+.++|+..+.|+++|...+....+. ++.|  + |++..+|+||
T Consensus       120 ~~~~~~~--~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vlDv  195 (352)
T 1fp2_A          120 DPTLSGS--YHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIVDV  195 (352)
T ss_dssp             CHHHHHG--GGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEEEE
T ss_pred             CchHHHH--HHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccc-cccCceEEEe
Confidence            3456778  999999999 899999999999999999999999999999999998887777 8889  6 8888999999


Q ss_pred             CC
Q 042968           80 GG   81 (81)
Q Consensus        80 GG   81 (81)
                      ||
T Consensus       196 G~  197 (352)
T 1fp2_A          196 GG  197 (352)
T ss_dssp             TC
T ss_pred             CC
Confidence            96

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.17  E-value=2.7e-11  Score=81.26  Aligned_cols=73  Identities=19%  Similarity=0.380  Sum_probs=67.8

Q ss_pred             ccccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968            6 VFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus         6 ~~~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      .+..  |.+|.+++++|+++|+..+|.++|+++..+|+....|+.+|...+....+.+++.++ +.+..+|+|||+
T Consensus       120 ~~~~--~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~  192 (360)
T 1tw3_A          120 ADIS--FTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGG  192 (360)
T ss_dssp             HGGG--GGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETC
T ss_pred             HHHH--HHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCC
Confidence            5678  999999999999999999999999999999999999999999988887889999999 998899999995

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.15  E-value=1.5e-11  Score=82.83  Aligned_cols=73  Identities=19%  Similarity=0.330  Sum_probs=67.3

Q ss_pred             cc-ccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968            6 VF-RNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus         6 ~~-~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      .+ ..  |.+|.+++++|+++|+..+|.++|+++.++|+..+.|+++|...+....+.+++.++ +.+..+|+|||+
T Consensus       118 ~~~~~--~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~  191 (374)
T 1qzz_A          118 HADLA--FTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGG  191 (374)
T ss_dssp             HHHGG--GGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETC
T ss_pred             hHHHH--HHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECC
Confidence            44 67  999999999999999999999999999999999999999999988877789999998 998899999995

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.90  E-value=9.4e-10  Score=74.37  Aligned_cols=72  Identities=19%  Similarity=0.261  Sum_probs=57.0

Q ss_pred             ccccccccccchHHHHhcCCCccccccC--CcchhhccCCchHHH----HHHHHHhhchhhhHHHHHHhCCCCCCCCeEE
Q 042968            4 KLVFRNLCRSQLKDTILEGGIPFNRAHG--MHIFEYVGLDPRFNK----HFNTAMYNYTSLVMSNIRESYKGFDNIKQLV   77 (81)
Q Consensus         4 ~~~~~~~~w~~l~~~lr~g~~~f~~~~g--~~~f~~~~~~p~~~~----~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lv   77 (81)
                      +..|++  |.+|+++||+|++++..++|  .++|+++.++|+..+    .|+.+|...+.   ..++..+. ..+..+|+
T Consensus       111 ~~~~~~--~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vl  184 (363)
T 3dp7_A          111 DVNYQG--LFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLL  184 (363)
T ss_dssp             HTTHHH--HTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEE
T ss_pred             HHhhhh--HHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEE
Confidence            456788  99999999999999999998  689999999999877    47777766543   23445444 46778999


Q ss_pred             ecCC
Q 042968           78 DVGG   81 (81)
Q Consensus        78 DVGG   81 (81)
                      ||||
T Consensus       185 DvG~  188 (363)
T 3dp7_A          185 DIGG  188 (363)
T ss_dssp             EESC
T ss_pred             EeCC
Confidence            9996

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.88  E-value=3.9e-09  Score=69.86  Aligned_cols=69  Identities=13%  Similarity=0.134  Sum_probs=61.6

Q ss_pred             ccccccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCC--CCCCeEEecCC
Q 042968            4 KLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGF--DNIKQLVDVGG   81 (81)
Q Consensus         4 ~~~~~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~--~~~~~lvDVGG   81 (81)
                      +..+..  |.+|++++++|+++|+     + |+++.++|+....|.++|...+......+++.++ +  .+..+|+|||+
T Consensus       104 ~~~~~~--~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~  174 (335)
T 2r3s_A          104 PMITNG--FNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN-ENKIEPLKVLDISA  174 (335)
T ss_dssp             HHHHGG--GTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT-C--CCCSEEEEETC
T ss_pred             hhhHHH--HHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc-cccCCCCEEEEECC
Confidence            356778  9999999999998876     3 9999999999999999999998888889999998 8  88899999995

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.85  E-value=4.1e-09  Score=70.87  Aligned_cols=64  Identities=19%  Similarity=0.223  Sum_probs=57.5

Q ss_pred             cccccccccchHHHHhcCCCccccccCCcchhhccCCch---HHHHHHHHHhhchh-hhHHHHHHhCCCCCCCCeEEecC
Q 042968            5 LVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPR---FNKHFNTAMYNYTS-LVMSNIRESYKGFDNIKQLVDVG   80 (81)
Q Consensus         5 ~~~~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~---~~~~F~~~M~~~s~-~~~~~~~~~~d~~~~~~~lvDVG   80 (81)
                      ..+.+  |.+|++++|+|++          |+|+.++|+   ..+.|+++|...+. ...+.+++.++ +++..+|+|||
T Consensus       132 ~~~~~--~~~L~~~l~~g~~----------~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG  198 (359)
T 1x19_A          132 LADDF--YMGLSQAVRGQKN----------FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVG  198 (359)
T ss_dssp             HHHHT--GGGHHHHHTTSCC----------CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEES
T ss_pred             HHHHH--HHHHHHHHhcCCC----------CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEEC
Confidence            35677  9999999998875          888999999   99999999999988 77899999999 99999999999


Q ss_pred             C
Q 042968           81 G   81 (81)
Q Consensus        81 G   81 (81)
                      +
T Consensus       199 ~  199 (359)
T 1x19_A          199 G  199 (359)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.43  E-value=3.3e-07  Score=61.14  Aligned_cols=66  Identities=18%  Similarity=0.285  Sum_probs=52.6

Q ss_pred             ccccccccchHHHHhcCCCc-cccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCC-CCeEEecCC
Q 042968            6 VFRNLCRSQLKDTILEGGIP-FNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN-IKQLVDVGG   81 (81)
Q Consensus         6 ~~~~~~w~~l~~~lr~g~~~-f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~-~~~lvDVGG   81 (81)
                      .++.  |.+|++++|+|++. |+..      .++.++|+..+.|+++|...... +..+++.++ +.+ ..+|+||||
T Consensus       121 ~~~~--~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~  188 (352)
T 3mcz_A          121 QWDN--WPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAG  188 (352)
T ss_dssp             TTTT--GGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETC
T ss_pred             HHHH--HHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCC
Confidence            5778  99999999998765 3432      23468999999999999985443 348899998 887 899999996

>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A

Probab=86.04  E-value=0.73  Score=27.03  Aligned_cols=54  Identities=15%  Similarity=0.288  Sum_probs=38.3

Q ss_pred             ccchHHHHhcCCCc--cccccCC----cchhhccCCchHHHHHHHHHhhchhhhHHHHHH
Q 042968           12 RSQLKDTILEGGIP--FNRAHGM----HIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRE   65 (81)
Q Consensus        12 w~~l~~~lr~g~~~--f~~~~g~----~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~   65 (81)
                      ...+.+.+..|.+.  .....|.    ++|.|+.++|++.+.+.++...........+.+
T Consensus        18 ~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ef~e~~~~Ar~~~~~~~~~~~~~   77 (140)
T 4dyq_A           18 ADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEARADSIFEEIFE   77 (140)
T ss_dssp             HHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888888763  3333443    579999999999999999987765554444443

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=85.70  E-value=0.27  Score=29.85  Aligned_cols=45  Identities=11%  Similarity=0.127  Sum_probs=28.0

Q ss_pred             chhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968           34 IFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus        34 ~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      +++|....|+....+...+........+.+++..+   ...+|+|||+
T Consensus         3 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vLDlG~   47 (227)
T 1ve3_A            3 FKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMK---KRGKVLDLAC   47 (227)
T ss_dssp             CHHHHHHCSTTTCTTSHHHHHHHHHHHHHHHHSCC---SCCEEEEETC
T ss_pred             chhHHHHhhhhhcccHHHHHHHHHHHHHHHHHhcC---CCCeEEEEec
Confidence            45566666666666666666555444555555554   3569999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	81
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	4e-20
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	2e-19
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	3e-19
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	6e-17
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	1e-16

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 78.2 bits (192), Expect = 4e-20
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 13 SQLKDTILEGGI-PFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFD 71
             K+ +++  I  F   HG+  +E++G D + N+ FN +M +  +  M  + E Y GF+
Sbjct: 21 MNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFE 80

Query: 72 NIKQLVDVGG 81
           I  LVDVGG
Sbjct: 81 GISTLVDVGG 90

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 76.3 bits (187), Expect = 2e-19
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 14 QLKDTILEGGI-PFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
          +LK  I E  +  F    G   ++++  +P +N  FN AM + + L+   +R+    FD 
Sbjct: 21 ELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDG 80

Query: 73 IKQLVDVGG 81
          ++ +VDVGG
Sbjct: 81 LESIVDVGG 89

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 76.0 bits (186), Expect = 3e-19
 Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 1  MHDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVM 60
            DK++        LKD +L+GGIPFN+A+GM  FEY G DPRFNK FN  M +++++ M
Sbjct: 12 NQDKVLME--SWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITM 69

Query: 61 SNIRESYKGFDNIKQLVDVGG 81
            I E+Y GF+ +K LVDVGG
Sbjct: 70 KKILETYTGFEGLKSLVDVGG 90

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 70.0 bits (170), Expect = 6e-17
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 10 LCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKG 69
          L  + L D +  G   +   +G   +E +  D      F+  M     L      ++Y  
Sbjct: 20 LAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD- 78

Query: 70 FDNIKQLVDVGG 81
          +  ++ ++DVGG
Sbjct: 79 WSAVRHVLDVGG 90

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 69.3 bits (168), Expect = 1e-16
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 13 SQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDN 72
          ++L D I  G   +   +G   +E +   P     F++ +     +       +Y  + N
Sbjct: 22 TRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTN 80

Query: 73 IKQLVDVGG 81
          ++ ++DVGG
Sbjct: 81 VRHVLDVGG 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	81
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.84
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.8
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.73
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.72
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.71
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	82.56

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.84  E-value=1.4e-21  Score=125.76  Aligned_cols=78  Identities=53%  Similarity=0.964  Sum_probs=72.7

Q ss_pred             CCccccccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968            2 HDKLVFRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus         2 ~~~~~~~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      +++.+|++  |.+|.++||+|+++|+.+||+++|+|++++|+..+.|+++|...+....+.+++.|+.+++.++||||||
T Consensus        13 ~~~~~~~~--W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDvGG   90 (243)
T d1kyza2          13 QDKVLMES--WYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGG   90 (243)
T ss_dssp             TSHHHHGG--GGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCSEEEEETC
T ss_pred             cCHHHHHH--HHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCCcEEEEecC
Confidence            57788999  9999999999999999999999999999999999999999999999889999999982366899999998

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.80  E-value=1.5e-20  Score=121.28  Aligned_cols=78  Identities=29%  Similarity=0.571  Sum_probs=61.0

Q ss_pred             CCccccccccccchHHHHhcCC-CccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecC
Q 042968            2 HDKLVFRNLCRSQLKDTILEGG-IPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVG   80 (81)
Q Consensus         2 ~~~~~~~~~~w~~l~~~lr~g~-~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVG   80 (81)
                      ++|.+|++  |.+|.++||+|. ++|+.+||.++|||+.+||+..+.|+++|.+.+...++.+++.|+.|++.++|||||
T Consensus        12 ~~p~~~~~--w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiG   89 (244)
T d1fp1d2          12 CYPALLQV--WMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVG   89 (244)
T ss_dssp             TCHHHHHH--HTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEET
T ss_pred             hCHHHHHH--HHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEec
Confidence            57899999  999999999965 679999999999999999999999999999999999999999997579999999999


Q ss_pred             C
Q 042968           81 G   81 (81)
Q Consensus        81 G   81 (81)
                      |
T Consensus        90 G   90 (244)
T d1fp1d2          90 G   90 (244)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.73  E-value=8.6e-19  Score=113.09  Aligned_cols=69  Identities=20%  Similarity=0.381  Sum_probs=67.3

Q ss_pred             ccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968           12 RSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus        12 w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      |.+|.++||+|+++|+.++|.++|+|+.++|+..+.|+++|...+....+.+++.|| |++.++||||||
T Consensus        22 ~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~vlDvG~   90 (256)
T d1qzza2          22 FTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGG   90 (256)
T ss_dssp             GGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETC
T ss_pred             HHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-CccCCEEEEECC
Confidence            999999999999999999999999999999999999999999999998999999999 999999999997

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.72  E-value=3.2e-18  Score=109.81  Aligned_cols=72  Identities=19%  Similarity=0.385  Sum_probs=68.7

Q ss_pred             cccccccchHHHHhcCCCccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968            7 FRNLCRSQLKDTILEGGIPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus         7 ~~~~~w~~l~~~lr~g~~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      ..+  |.+|+++||+|+++|+.++|+++|+|+.++|+..+.|+++|+..+....+.+++.|| |++.++|+||||
T Consensus        18 ~~~--~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGc   89 (253)
T d1tw3a2          18 DIS--FTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGG   89 (253)
T ss_dssp             GGG--GGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETC
T ss_pred             ccc--HHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCC
Confidence            456  999999999999999999999999999999999999999999999988899999999 999999999996

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.71  E-value=8.1e-19  Score=112.99  Aligned_cols=77  Identities=29%  Similarity=0.528  Sum_probs=69.3

Q ss_pred             CCccccccccccchHHHHhcCC-CccccccCCcchhhccCCchHHHHHHHHHhhchhhhHHHHHHh-CCCCCCCCeEEec
Q 042968            2 HDKLVFRNLCRSQLKDTILEGG-IPFNRAHGMHIFEYVGLDPRFNKHFNTAMYNYTSLVMSNIRES-YKGFDNIKQLVDV   79 (81)
Q Consensus         2 ~~~~~~~~~~w~~l~~~lr~g~-~~f~~~~g~~~f~~~~~~p~~~~~F~~~M~~~s~~~~~~~~~~-~d~~~~~~~lvDV   79 (81)
                      ++|.++.+  |.+|.+++|+|. ++|+.+||+++|+|+++||+..+.|+++|+..+......+.+. ++ |++.++||||
T Consensus        11 ~~p~~~~~--w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~-~~~~~~vvDv   87 (244)
T d1fp2a2          11 LDPTLSGS--YHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFV-FDGLESIVDV   87 (244)
T ss_dssp             TCHHHHHG--GGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHH-HTTCSEEEEE
T ss_pred             hCHHHHHH--HHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhccc-ccCceEEEEe
Confidence            57889999  999999999974 6899999999999999999999999999999998876776653 46 8999999999


Q ss_pred             CC
Q 042968           80 GG   81 (81)
Q Consensus        80 GG   81 (81)
                      ||
T Consensus        88 GG   89 (244)
T d1fp2a2          88 GG   89 (244)
T ss_dssp             TC
T ss_pred             cC
Confidence            97

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=82.56  E-value=0.61  Score=28.25  Aligned_cols=40  Identities=13%  Similarity=0.161  Sum_probs=27.2

Q ss_pred             CchHHHHHHHHHhhchhhhHHHHHHhCCCCCCCCeEEecCC
Q 042968           41 DPRFNKHFNTAMYNYTSLVMSNIRESYKGFDNIKQLVDVGG   81 (81)
Q Consensus        41 ~p~~~~~F~~~M~~~s~~~~~~~~~~~d~~~~~~~lvDVGG   81 (81)
                      +|.....+..++..........+.+..+ ++.-.+|+|||.
T Consensus        37 ~~~~~~~~~~a~~~~~~~~~~~l~~~~~-l~~~~~vLDiGc   76 (282)
T d2o57a1          37 EPVDQDEIREASLRTDEWLASELAMTGV-LQRQAKGLDLGA   76 (282)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHHHHHTTC-CCTTCEEEEETC
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeCC
Confidence            3444444555555555555677778888 888899999994