Citrus Sinensis ID: 042979

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIAEGNSSPECGATS
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEEccccEEEEEEccEEEEEccccEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEccccEEEEEEEcccccccccEccccccccHHHEEEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
vihpfdaqangelslsIDDYVVVCQvaptgwsegeckgqagwfplayverqekapaskiaegnsspecgats
Flexible Loop (DISEMBL)
vihpfdaqangelslsidDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKapaskiaegnsspecgats
Low Complexity Region (SEG)
VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIAEGNSSPECGATS
Disordered region (IsUnstruct)
************LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE***********************
Disordered Region (DISOPRED)
VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV************************
Disordered Region (DISEMBL)
VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE********************
Disordered Region (DISPRO)
VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIAEGNSSPECGATS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
P19706	1147	Myosin heavy chain IB OS=	N/A	no	0.666	0.041	0.416	1e-05
O42287	1270	Intersectin-1 OS=Xenopus	N/A	no	0.736	0.041	0.381	3e-05
Q15811	1721	Intersectin-1 OS=Homo sap	yes	no	0.902	0.037	0.302	6e-05
Q9Z0R4	1714	Intersectin-1 OS=Mus musc	no	no	0.902	0.037	0.323	6e-05
Q9Z0R6	1659	Intersectin-2 OS=Mus musc	no	no	0.986	0.042	0.368	0.0004
Q9WVE9	1217	Intersectin-1 OS=Rattus n	no	no	0.902	0.053	0.302	0.0005
Q63356	1107	Unconventional myosin-Ie	no	no	0.680	0.044	0.346	0.0007
E9Q634	1107	Unconventional myosin-Ie	no	no	0.680	0.044	0.346	0.0008
Q12965	1108	Unconventional myosin-Ie	no	no	0.680	0.044	0.346	0.0008

>sp|P19706|MYSB_ACACA Myosin heavy chain IB OS=Acanthamoeba castellanii GN=MIB PE=1 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 2    IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
            ++ +DAQ   EL+    D ++V Q  P GW EGE  G+ GW P  YV+
Sbjct: 1098 LYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 1145

Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.
Acanthamoeba castellanii (taxid: 5755)

>sp|O42287|ITSN1_XENLA Intersectin-1 OS=Xenopus laevis GN=itsn1 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 2   IHPFDAQANGELSLSIDDYVVV--CQVAPTGWSEGECKGQAGWFPLAYVERQEKA 54
           ++PFDA+++ E+++   D ++V   Q    GW  GE KG+ GWFP  Y ER  ++
Sbjct: 740 LYPFDARSHDEITIEPGDIIMVDESQTGEPGWLGGELKGKTGWFPANYAERMPES 794

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles.

Xenopus laevis (taxid: 8355)

>sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=1 SV=3

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 11/76 (14%)

Query: 2   IHPFDAQANGELSLSIDDYVVV-------CQVAPTGWSEGECKGQAGWFPLAYVER---- 50
           ++PF+++++ E+++   D V+V        Q    GW  GE KG+ GWFP  Y E+    
Sbjct: 748 LYPFESRSHDEITIQPGDIVMVKGEWVDESQTGEPGWLGGELKGKTGWFPANYAEKIPEN 807

Query: 51  QEKAPASKIAEGNSSP 66
           +  AP   + +  S+P
Sbjct: 808 EVPAPVKPVTDSTSAP 823

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Isoform 1 could be involved in brain-specific synaptic vesicle recycling. Inhibits ARHGAP31 activity toward RAC1.

Homo sapiens (taxid: 9606)

>sp|Q9Z0R4|ITSN1_MOUSE Intersectin-1 OS=Mus musculus GN=Itsn1 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 2   IHPFDAQANGELSLSIDDYVVV--CQVAPTGWSEGECKGQAGWFPLAYVER----QEKAP 55
           ++PF+++++ E+++   D V+V   Q    GW  GE KG+ GWFP  Y E+    +   P
Sbjct: 746 LYPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEKIPENEVPTP 805

Query: 56  ASKIAEGNSSP 66
           A  + +  S+P
Sbjct: 806 AKPVTDLTSAP 816

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Inhibits ARHGAP31 activity toward RAC1.

Mus musculus (taxid: 10090)

>sp|Q9Z0R6|ITSN2_MOUSE Intersectin-2 OS=Mus musculus GN=Itsn2 PE=1 SV=2

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 2   IHPFDAQANGELSLSIDDYVVVCQ--VAPTGWSEGECKGQAGWFPLAYVER---QEKAPA 56
           ++PF+A+ + E+S S  D + V +  V   GW  G  +G+ GWFP  YVE+    EKA +
Sbjct: 726 LYPFEARNHDEMSFSSGDIIQVDEKTVGEPGWLYGSFQGKFGWFPCNYVEKVLSSEKALS 785

Query: 57  SKIAEGNSSPECGATS 72
            K A    +    ATS
Sbjct: 786 PKKALLPPTVSLSATS 801

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles.

Mus musculus (taxid: 10090)

>sp|Q9WVE9|ITSN1_RAT Intersectin-1 OS=Rattus norvegicus GN=Itsn1 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 11/76 (14%)

Query: 2   IHPFDAQANGELSLSIDDYVVV-------CQVAPTGWSEGECKGQAGWFPLAYVER---- 50
           ++PF+++++ E+++   D V+V        Q    GW  GE KG+ GWFP  Y E+    
Sbjct: 745 LYPFESRSHDEITIQPGDIVMVKGEWVDESQTGEPGWLGGEPKGKTGWFPANYAEKIPEN 804

Query: 51  QEKAPASKIAEGNSSP 66
           +   PA  + +  S+P
Sbjct: 805 EIPTPAKPVTDLTSAP 820

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Inhibits ARHGAP31 activity toward RAC1.

Rattus norvegicus (taxid: 10116)

>sp|Q63356|MYO1E_RAT Unconventional myosin-Ie OS=Rattus norvegicus GN=Myo1e PE=1 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 2    IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
            ++ +DAQ   ELS + +D + + +  P+GW  G  +G+ G FP  YV +
Sbjct: 1058 LYAYDAQDTDELSFNANDVIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 1106

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails bind to membranous compartments, which are then moved relative to actin filaments. Binds to membranes containing anionic phospholipids via its tail domain. Required for normal morphology of the glomerular basement membrane, normal development of foot processes by kidney podocytes and normal kidney function (By similarity). In dendritic cells, may control the movement of class II-containing cytoplasmic vesicles along the actin cytoskeleton by connecting them with the actin network via C11orf46/ ARF7EP and ARL14.

Rattus norvegicus (taxid: 10116)

>sp|E9Q634|MYO1E_MOUSE Unconventional myosin-Ie OS=Mus musculus GN=Myo1e PE=1 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 2    IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
            ++ +DAQ   ELS + +D + + +  P+GW  G  +G+ G FP  YV +
Sbjct: 1058 LYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 1106

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails bind to membranous compartments, which are then moved relative to actin filaments. Binds to membranes containing anionic phospholipids via its tail domain (By similarity). Required for normal morphology of the glomerular basement membrane, normal development of foot processes by kidney podocytes and normal kidney function. In dendritic cells, may control the movement of class II-containing cytoplasmic vesicles along the actin cytoskeleton by connecting them with the actin network via C11orf46/ ARF7EP and ARL14.

Mus musculus (taxid: 10090)

>sp|Q12965|MYO1E_HUMAN Unconventional myosin-Ie OS=Homo sapiens GN=MYO1E PE=1 SV=2

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 2    IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
            ++ +DAQ   ELS + +D + + +  P+GW  G  +G+ G FP  YV +
Sbjct: 1059 LYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 1107

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails bind to membranous compartments, which are then moved relative to actin filaments. Binds to membranes containing anionic phospholipids via its tail domain. Required for normal morphology of the glomerular basement membrane, normal development of foot processes by kidney podocytes and normal kidney function. In dendritic cells, may control the movement of class II-containing cytoplasmic vesicles along the actin cytoskeleton by connecting them with the actin network via C11orf46/ ARF7EP and ARL14.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
255557725	368	clathrin binding protein, putative [Rici	0.847	0.165	0.868	4e-25
224139142	370	predicted protein [Populus trichocarpa]	0.916	0.178	0.787	5e-24
15221714	439	SH3 domain-containing protein [Arabidops	0.888	0.145	0.796	2e-23
297846528	439	SH3 domain-containing protein 1 [Arabido	0.875	0.143	0.793	5e-23
224074583	371	predicted protein [Populus trichocarpa]	0.847	0.164	0.786	2e-22
356531527	362	PREDICTED: uncharacterized protein LOC10	0.847	0.168	0.786	4e-22
218192497	140	hypothetical protein OsI_10872 [Oryza sa	0.847	0.435	0.786	4e-22
225427560	371	PREDICTED: uncharacterized protein LOC10	0.888	0.172	0.796	4e-22
359474740	350	PREDICTED: uncharacterized protein LOC10	0.888	0.182	0.796	5e-22
356496467	314	PREDICTED: uncharacterized protein LOC10	0.847	0.194	0.786	6e-22

>gi|255557725|ref|XP_002519892.1| clathrin binding protein, putative [Ricinus communis] gi|223540938|gb|EEF42496.1| clathrin binding protein, putative [Ricinus communis]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/61 (86%), Positives = 58/61 (95%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
           VIHPFDAQA GELSLS+DDYVVV QVAPTGWSEGECKG+AGWFP AY+E+QEKAPA+KIA
Sbjct: 306 VIHPFDAQAEGELSLSLDDYVVVRQVAPTGWSEGECKGKAGWFPSAYIEKQEKAPANKIA 365

Query: 61  E 61
           E
Sbjct: 366 E 366

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139142|ref|XP_002326778.1| predicted protein [Populus trichocarpa] gi|222834100|gb|EEE72577.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/66 (78%), Positives = 59/66 (89%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
           VIHPFDAQA GELSL IDD+VVV +VAPTGWSEGECKG+AGWFP AY+E+ EKAPASKI 
Sbjct: 305 VIHPFDAQAEGELSLFIDDFVVVRKVAPTGWSEGECKGKAGWFPSAYIEKHEKAPASKIM 364

Query: 61  EGNSSP 66
           E +S+P
Sbjct: 365 EESSTP 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221714|ref|NP_174429.1| SH3 domain-containing protein [Arabidopsis thaliana] gi|12322535|gb|AAG51264.1|AC027135_5 unknown protein [Arabidopsis thaliana] gi|16974676|gb|AAL32438.1|AF367773_1 SH3 domain-containing protein 1 [Arabidopsis thaliana] gi|19424043|gb|AAL87310.1| unknown protein [Arabidopsis thaliana] gi|21281229|gb|AAM45032.1| unknown protein [Arabidopsis thaliana] gi|332193235|gb|AEE31356.1| SH3 domain-containing protein [Arabidopsis thaliana]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/64 (79%), Positives = 57/64 (89%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
           V+HPFDAQA GELSL++DDYV+V QVA TGWSEGE KG+AGWFP AYVE+QEKAPASKI 
Sbjct: 373 VVHPFDAQAPGELSLAVDDYVIVRQVAGTGWSEGEYKGKAGWFPSAYVEKQEKAPASKIV 432

Query: 61  EGNS 64
           E NS
Sbjct: 433 ESNS 436

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846528|ref|XP_002891145.1| SH3 domain-containing protein 1 [Arabidopsis lyrata subsp. lyrata] gi|297336987|gb|EFH67404.1| SH3 domain-containing protein 1 [Arabidopsis lyrata subsp. lyrata]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 56/63 (88%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
           V+HPFDAQA GELSL++DDYV+V QVA TGWSEGE KG+AGWFP AYVE+QEKAPASKI 
Sbjct: 373 VVHPFDAQAPGELSLAVDDYVIVRQVAGTGWSEGEYKGKAGWFPSAYVEKQEKAPASKIV 432

Query: 61  EGN 63
           E N
Sbjct: 433 ESN 435

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074583|ref|XP_002304394.1| predicted protein [Populus trichocarpa] gi|222841826|gb|EEE79373.1| predicted protein [Populus trichocarpa]

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/61 (78%), Positives = 54/61 (88%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
           VIHPFDAQA GELSLS+DD+VVV QVAPTGWSEGECKG+AGWFP AY+E+ E +PASK  
Sbjct: 306 VIHPFDAQAEGELSLSVDDFVVVRQVAPTGWSEGECKGKAGWFPSAYIEKHENSPASKTM 365

Query: 61  E 61
           E
Sbjct: 366 E 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531527|ref|XP_003534329.1| PREDICTED: uncharacterized protein LOC100819767 [Glycine max]

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/61 (78%), Positives = 52/61 (85%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
           V+HPFDAQA GELSLS+DD+VVV QV P GWSEGECKG AGWFP AYVERQ+  PASKI 
Sbjct: 302 VVHPFDAQAEGELSLSVDDFVVVRQVGPNGWSEGECKGNAGWFPSAYVERQDMIPASKIT 361

Query: 61  E 61
           E
Sbjct: 362 E 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218192497|gb|EEC74924.1| hypothetical protein OsI_10872 [Oryza sativa Indica Group]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/61 (78%), Positives = 56/61 (91%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
           VIHPFDAQA+GELS+S+ DYVVV QVAP GWSEGECKG+AGWFP AYVE+++KAPASK+ 
Sbjct: 74  VIHPFDAQADGELSISVGDYVVVRQVAPNGWSEGECKGKAGWFPSAYVEQRDKAPASKVI 133

Query: 61  E 61
           E
Sbjct: 134 E 134

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427560|ref|XP_002267588.1| PREDICTED: uncharacterized protein LOC100249391 isoform 1 [Vitis vinifera] gi|296085501|emb|CBI29233.3| unnamed protein product [Vitis vinifera]

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/64 (79%), Positives = 55/64 (85%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
           VIHPFDAQA+GEL LS+DDYVVV QVAP GWSEGECKG AGWFP AYVER++KAPAS I 
Sbjct: 302 VIHPFDAQADGELGLSVDDYVVVRQVAPNGWSEGECKGTAGWFPSAYVERRDKAPASVIN 361

Query: 61  EGNS 64
           E  S
Sbjct: 362 EEAS 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474740|ref|XP_003631526.1| PREDICTED: uncharacterized protein LOC100249391 isoform 2 [Vitis vinifera]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/64 (79%), Positives = 55/64 (85%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
           VIHPFDAQA+GEL LS+DDYVVV QVAP GWSEGECKG AGWFP AYVER++KAPAS I 
Sbjct: 281 VIHPFDAQADGELGLSVDDYVVVRQVAPNGWSEGECKGTAGWFPSAYVERRDKAPASVIN 340

Query: 61  EGNS 64
           E  S
Sbjct: 341 EEAS 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496467|ref|XP_003517089.1| PREDICTED: uncharacterized protein LOC100816554 [Glycine max]

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/61 (78%), Positives = 52/61 (85%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
           VIHPFDAQA GELSLS+DD+VVV QV P GWSEGECKG AGWFP AYV+RQ+  PASKI 
Sbjct: 254 VIHPFDAQAEGELSLSVDDFVVVRQVGPNGWSEGECKGNAGWFPSAYVQRQDMIPASKIT 313

Query: 61  E 61
           E
Sbjct: 314 E 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
TAIR|locus:2206174	439	AT1G31440 [Arabidopsis thalian	0.930	0.152	0.761	1.1e-23
TAIR|locus:2117666	351	AT4G18060 "AT4G18060" [Arabido	0.833	0.170	0.55	1.5e-15
TAIR|locus:2139554	368	AT4G34660 "AT4G34660" [Arabido	0.847	0.165	0.540	5e-14
TAIR|locus:2120257	169	AT4G39020 "AT4G39020" [Arabido	0.847	0.360	0.491	2.7e-13
UNIPROTKB|A8DCP3	914	ITSN1 "Intersectin 1 short for	0.902	0.071	0.323	3.2e-06
UNIPROTKB|G3N0W1	1215	ITSN1 "Uncharacterized protein	0.902	0.053	0.338	3.5e-06
UNIPROTKB|A7Y322	1015	ITSN1 "Intersectin-1" [Homo sa	0.902	0.064	0.323	3.6e-06
UNIPROTKB|E7ERJ1	1020	ITSN1 "Intersectin-1" [Homo sa	0.902	0.063	0.323	3.6e-06
UNIPROTKB|E7ERJ0	1178	ITSN1 "Intersectin-1" [Homo sa	0.902	0.055	0.323	4.3e-06
UNIPROTKB|B4DTM2	1215	ITSN1 "Intersectin-1" [Homo sa	0.902	0.053	0.323	4.5e-06

TAIR|locus:2206174 AT1G31440 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 51/67 (76%), Positives = 58/67 (86%)

Query:     1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
             V+HPFDAQA GELSL++DDYV+V QVA TGWSEGE KG+AGWFP AYVE+QEKAPASKI 
Sbjct:   373 VVHPFDAQAPGELSLAVDDYVIVRQVAGTGWSEGEYKGKAGWFPSAYVEKQEKAPASKIV 432

Query:    61 EGNSSPE 67
             E NS  +
Sbjct:   433 ESNSKQQ 439

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0012505 "endomembrane system" evidence=IDA

GO:0030276 "clathrin binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2117666 AT4G18060 "AT4G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query:     1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
             VIHPF A +  EL L   DY+VV +V+ TGW+EGECKG+AGWFP+AY+E++++ P +  A
Sbjct:   288 VIHPFSAASEKELDLDKGDYIVVRKVSQTGWAEGECKGKAGWFPMAYIEKRQRLPTTNFA 347

GO:0030276 "clathrin binding" evidence=ISS

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2139554 AT4G34660 "AT4G34660" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 5.0e-14, P = 5.0e-14
 Identities = 33/61 (54%), Positives = 46/61 (75%)

Query:     1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
             V+ P+    + ELSLS  +YVVV +V  +GW+EGECKG+AGWFP  Y+ER+E+  ASK++
Sbjct:   306 VLFPYHGVTDVELSLSTGEYVVVRKVTGSGWAEGECKGKAGWFPYGYIERRERVLASKVS 365

Query:    61 E 61
             E
Sbjct:   366 E 366

GO:0008150 "biological_process" evidence=ND

GO:0030276 "clathrin binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2120257 AT4G39020 "AT4G39020" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query:     1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
             V+ P+ A ++ ELSLS+ DYVV+ +V  + W+EGECKG AGWF   Y+ER+++  A+K+ 
Sbjct:   107 VMFPYQADSDFELSLSVGDYVVIREVVSSVWAEGECKGNAGWFTYIYIERRDRVFATKVI 166

Query:    61 E 61
             E
Sbjct:   167 E 167

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A8DCP3 ITSN1 "Intersectin 1 short form variant 14" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query:     2 IHPFDAQANGELSLSIDDYVVV--CQVAPTGWSEGECKGQAGWFPLAYVER----QEKAP 55
             ++PF+++++ E+++   D V+V   Q    GW  GE KG+ GWFP  Y E+    +  AP
Sbjct:   748 LYPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEKIPENEVPAP 807

Query:    56 ASKIAEGNSSP 66
                + +  S+P
Sbjct:   808 VKPVTDSTSAP 818

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

UNIPROTKB|G3N0W1 ITSN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 121 (47.7 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query:     2 IHPFDAQANGELSLSIDDYVVV--CQVAPTGWSEGECKGQAGWFPLAYVER----QEKAP 55
             ++PF+++++ E+++   D V+V   Q    GW  GE KG+ GWFP  Y E+    +  AP
Sbjct:   748 LYPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEKIPENEVPAP 807

Query:    56 ASKIAEGNSSP 66
                + E  S+P
Sbjct:   808 VKPVTEAASTP 818

GO:0070064 "proline-rich region binding" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0019209 "kinase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|A7Y322 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query:     2 IHPFDAQANGELSLSIDDYVVV--CQVAPTGWSEGECKGQAGWFPLAYVER----QEKAP 55
             ++PF+++++ E+++   D V+V   Q    GW  GE KG+ GWFP  Y E+    +  AP
Sbjct:   748 LYPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEKIPENEVPAP 807

Query:    56 ASKIAEGNSSP 66
                + +  S+P
Sbjct:   808 VKPVTDSTSAP 818

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

UNIPROTKB|E7ERJ1 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query:     2 IHPFDAQANGELSLSIDDYVVV--CQVAPTGWSEGECKGQAGWFPLAYVER----QEKAP 55
             ++PF+++++ E+++   D V+V   Q    GW  GE KG+ GWFP  Y E+    +  AP
Sbjct:   748 LYPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEKIPENEVPAP 807

Query:    56 ASKIAEGNSSP 66
                + +  S+P
Sbjct:   808 VKPVTDSTSAP 818

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

UNIPROTKB|E7ERJ0 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query:     2 IHPFDAQANGELSLSIDDYVVV--CQVAPTGWSEGECKGQAGWFPLAYVER----QEKAP 55
             ++PF+++++ E+++   D V+V   Q    GW  GE KG+ GWFP  Y E+    +  AP
Sbjct:   711 LYPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEKIPENEVPAP 770

Query:    56 ASKIAEGNSSP 66
                + +  S+P
Sbjct:   771 VKPVTDSTSAP 781

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|B4DTM2 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query:     2 IHPFDAQANGELSLSIDDYVVV--CQVAPTGWSEGECKGQAGWFPLAYVER----QEKAP 55
             ++PF+++++ E+++   D V+V   Q    GW  GE KG+ GWFP  Y E+    +  AP
Sbjct:   748 LYPFESRSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEKIPENEVPAP 807

Query:    56 ASKIAEGNSSP 66
                + +  S+P
Sbjct:   808 VKPVTDSTSAP 818

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00290321 hypothetical protein (371 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	72
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	5e-18
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	2e-11
smart00326	56	smart00326, SH3, Src homology 3 domains	6e-11
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	9e-11
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	6e-10
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	6e-10
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	4e-09
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	6e-09
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	2e-08
cd11987	55	cd11987, SH3_Intersectin1_1, First Src homology 3	5e-08
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	8e-08
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	2e-07
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	2e-07
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	3e-07
cd11982	52	cd11982, SH3_Shank1, Src homology 3 domain of SH3	4e-07
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	5e-07
cd11940	55	cd11940, SH3_ARHGEF5_19, Src homology 3 domain of	6e-07
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	7e-07
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	7e-07
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	9e-07
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	1e-06
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	2e-06
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	2e-06
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	2e-06
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	2e-06
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	2e-06
cd11759	57	cd11759, SH3_CRK_C, C-terminal Src Homology 3 doma	3e-06
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	3e-06
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	3e-06
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	3e-06
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	3e-06
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	3e-06
pfam00018	47	pfam00018, SH3_1, SH3 domain	5e-06
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	8e-06
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	1e-05
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	1e-05
cd11791	59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	1e-05
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	1e-05
cd11983	52	cd11983, SH3_Shank2, Src homology 3 domain of SH3	2e-05
cd11832	50	cd11832, SH3_Shank, Src homology 3 domain of SH3 a	2e-05
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	2e-05
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	2e-05
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	3e-05
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	5e-05
cd12021	53	cd12021, SH3_p47phox_1, First or N-terminal Src ho	6e-05
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	7e-05
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	7e-05
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	9e-05
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	9e-05
cd11989	52	cd11989, SH3_Intersectin1_2, Second Src homology 3	9e-05
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	1e-04
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	1e-04
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	1e-04
cd11984	52	cd11984, SH3_Shank3, Src homology 3 domain of SH3	1e-04
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	1e-04
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	1e-04
cd11939	55	cd11939, SH3_ephexin1, Src homology 3 domain of th	2e-04
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	2e-04
cd11993	65	cd11993, SH3_Intersectin1_4, Fourth Src homology 3	2e-04
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	2e-04
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	3e-04
cd11938	55	cd11938, SH3_ARHGEF16_26, Src homology 3 domain of	3e-04
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	4e-04
cd11990	52	cd11990, SH3_Intersectin2_2, Second Src homology 3	4e-04
cd11801	55	cd11801, SH3_JIP1_like, Src homology 3 domain of J	5e-04
cd12076	54	cd12076, SH3_Tks4_2, Second Src homology 3 domain	5e-04
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	5e-04
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	5e-04
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	7e-04
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	8e-04
cd12047	53	cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 do	0.001
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	0.001
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	0.001
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	0.002
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	0.002
cd11945	61	cd11945, SH3_Endophilin_B1, Src homology 3 domain	0.002
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	0.004

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 69.7 bits (171), Expect = 5e-18
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 5/54 (9%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKG-----QAGWFPLAYVE 49
          VI PF A A  +LSL++   V+V + +P+GW EGE +      Q GWFP  YV+
Sbjct: 4  VIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVK 57

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 53.1 bits (128), Expect = 2e-11
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVV--CQVAPTGWSEGECKGQAGWFPLAYVER 50
           ++ F+A+   E+S    D + V   QVA  GW  GE KG+ GWFP  YVE+
Sbjct: 4  ALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYVEK 55

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 51.4 bits (124), Expect = 6e-11
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-GQAGWFPLAYVE 49
           ++ + AQ   ELS    D + V + +  GW +G    G+ G FP  YVE
Sbjct: 7  ALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 51.2 bits (123), Expect = 9e-11
 Identities = 19/49 (38%), Positives = 23/49 (46%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
              F+     ELS    D + V QV   GW EG   G+ GWFP  YV+
Sbjct: 4  AKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 48.9 bits (117), Expect = 6e-10
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVE 49
           +H + AQ   EL+L   D V V +  P GW EGE    G+ GWFP +Y E
Sbjct: 4  CVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYTE 54

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 49.0 bits (118), Expect = 6e-10
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC-KGQAGWFPLAY 47
           ++ ++AQ + ELS    D + V +    GW EGE   G+ G FP  Y
Sbjct: 4  ALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 46.9 bits (112), Expect = 4e-09
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQV-APTGWSEGE-CKGQAGWFPLAYVE 49
           ++ FD+Q +GELSL   + + + +     GW EG   +G+ G FP +YVE
Sbjct: 4  ALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEVGLFPSSYVE 54

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 46.5 bits (111), Expect = 6e-09
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          V   +DA+   EL+L + D +   +    GW EG   G+ G FP  +V+
Sbjct: 4  VEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLNGKRGMFPDNFVK 52

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 45.3 bits (108), Expect = 2e-08
 Identities = 22/46 (47%), Positives = 27/46 (58%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
          ++AQ   ELSL   D V+V + +  GW  GEC GQ GWFP  YV  
Sbjct: 8  YEAQREDELSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYVTE 53

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212920 cd11987, SH3_Intersectin1_1, First Src homology 3 domain (or SH3A) of Intersectin-1

 Score = 44.2 bits (104), Expect = 5e-08
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 2  IHPFDAQANGELSLSIDDYVVV--CQVAPTGWSEGECKGQAGWFPLAYVER 50
          ++PF+A+++ E+++   D V+V   Q    GW  GE KG+ GWFP  Y E+
Sbjct: 5  LYPFEARSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAEK 55

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 43.7 bits (103), Expect = 8e-08
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQ--VAPTGWSEGECKGQAGWFPLAYVER 50
          ++PF+A+ + E+S +  D + V +  V   GW  G  +G  GWFP  YVE+
Sbjct: 7  LYPFEARNHDEMSFNAGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEK 57

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 43.1 bits (101), Expect = 2e-07
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
          ++ F AQ + ELS    D V + +     W EGE  G+ G FP++YVE+
Sbjct: 6  VYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEK 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 42.4 bits (100), Expect = 2e-07
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
          ++ +DAQ   ELS +  D + + +  P+GW  G  +G+ G FP  YVE+
Sbjct: 5  LYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYVEK 53

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 42.3 bits (100), Expect = 3e-07
 Identities = 18/48 (37%), Positives = 24/48 (50%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          ++ + A    ELSL   D + V +    GW  GE  G+ G FP  YVE
Sbjct: 5  LYSYTANREDELSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212915 cd11982, SH3_Shank1, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 1

 Score = 41.9 bits (98), Expect = 4e-07
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFP 44
          + P+ +QA GE+SLS  + + V  V   G+ EG+ KG+ GWFP
Sbjct: 6  VKPYQSQAEGEISLSKGEKIKVLSVGEGGFWEGQVKGRVGWFP 48

Shank1, also called SSTRIP (Somatostatin receptor-interacting protein), is a brain-specific protein that plays a role in the construction of postsynaptic density (PSD) and the maturation of dendritic spines. Mice deficient in Shank1 show altered PSD composition, thinner PSDs, smaller dendritic spines, and weaker basal synaptic transmission, although synaptic plasticity is normal. They show increased anxiety and impaired fear memory, but also show better spatial learning. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 41.6 bits (98), Expect = 5e-07
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 7  AQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
          AQ + EL L   D V +  +   GW  GE  G+ G FP  +V
Sbjct: 10 AQLDEELDLREGDVVTITGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212873 cd11940, SH3_ARHGEF5_19, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19

 Score = 41.3 bits (97), Expect = 6e-07
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVE 49
          I  + AQ N EL+L   D ++V Q +  GW EG     G+ GWFP ++VE
Sbjct: 5  IRSYKAQENDELTLEKADIIMVRQQSSDGWLEGVRLSDGERGWFPQSHVE 54

ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 41.2 bits (97), Expect = 7e-07
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           ++PF AQ+  ELSL   D + + +     W EGE  G+ G FP +YVE
Sbjct: 4  ALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNGRVGIFPASYVE 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 41.3 bits (97), Expect = 7e-07
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAP-TGWSEGECKGQAGWFPLAY 47
           ++ ++AQ + E+S+ + D + V +    +GW+ GE  G  G FP +Y
Sbjct: 4  ALYDYEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEINGVKGLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 40.7 bits (96), Expect = 9e-07
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
           I  ++AQ + E+SL   + V V +   +GW       + GW P +Y+E 
Sbjct: 4  AIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVRKGDKEGWVPASYLEP 53

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 40.3 bits (95), Expect = 1e-06
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
          F+ Q  GEL     D + V   +   W +GE +G+ G FP  YV+ 
Sbjct: 8  FNPQEPGELEFRRGDIITVLDSSDPDWWKGELRGRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 40.0 bits (94), Expect = 2e-06
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          ++ ++ +  G+LS    D +++ +     W  GEC G+ G+FP +YV+
Sbjct: 5  LYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGKQGFFPASYVQ 52

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 40.1 bits (95), Expect = 2e-06
 Identities = 19/45 (42%), Positives = 22/45 (48%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          + A    ELSL   D V V      GW EGE  G+ G  P +YVE
Sbjct: 8  YVATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVE 52

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 40.1 bits (94), Expect = 2e-06
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  FDAQANG--ELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          +D QA    E+S   DD +   ++   GW  G C+G+ G FP  YVE
Sbjct: 6  YDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCRGKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 40.2 bits (94), Expect = 2e-06
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
          FD Q +GEL     D++ V   +   W +G C GQ G FP  YV  
Sbjct: 8  FDPQEDGELGFRRGDFIEVMDNSDPNWWKGACHGQTGMFPRNYVTP 53

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 40.0 bits (93), Expect = 2e-06
 Identities = 18/45 (40%), Positives = 22/45 (48%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          F      ELS+   D + V +V   GW EG   G+ GWFP  YV 
Sbjct: 10 FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGKTGWFPSNYVR 54

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212693 cd11759, SH3_CRK_C, C-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 39.8 bits (93), Expect = 3e-06
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          +D  A   L+L + D V V ++  +G  EGE  G+ G FP  +VE
Sbjct: 15 YDKTA---LALEVGDLVKVTKINVSGQWEGELNGKVGHFPFTHVE 56

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The C-terminal SH3 domain of CRK has not been shown to bind any target protein; it acts as a negative regulator of CRK function by stabilizing a structure that inhibits the access by target proteins to the N-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 39.9 bits (93), Expect = 3e-06
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          V+H F A+ + +LSL+  + V + +   T W  G+CK   G FP  +V+
Sbjct: 4  VLHDFPAEHSDDLSLNSGEIVYLLEKIDTEWYRGKCKNTTGIFPANHVK 52

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 39.6 bits (93), Expect = 3e-06
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           ++ + A  + ELS    D + V +    GW EG   G  G FP  YVE
Sbjct: 4  ALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 39.6 bits (92), Expect = 3e-06
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 5  FDAQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVERQ 51
          F A+   ELSL   D V +  +++  GW  GE  G+ GWFP  YVE  
Sbjct: 9  FCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVEED 56

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 39.6 bits (93), Expect = 3e-06
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          F+ +  GEL     D + +       W EG   GQ+G+FP+ YVE
Sbjct: 9  FEPENEGELGFKEGDIITLTNQIDENWYEGMVNGQSGFFPVNYVE 53

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 39.4 bits (92), Expect = 3e-06
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 2  IHPFDAQANGE-LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
          ++ F  + + + LS    + + V Q    GW EGE  G  GWFP +YV
Sbjct: 5  LYAFTGEQHQQGLSFEAGELIRVLQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 38.7 bits (91), Expect = 5e-06
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-GQAGWFP 44
           ++ + A+   ELS    D ++V + +  GW +G  K G+ G  P
Sbjct: 2  ALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIP 46

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 38.6 bits (90), Expect = 8e-06
 Identities = 19/48 (39%), Positives = 22/48 (45%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          + P+ AQ   ELS    D + V       W  GE  GQ G FP  YVE
Sbjct: 5  LFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGELNGQTGLFPSNYVE 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 38.3 bits (89), Expect = 1e-05
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
          ++ +DA  + ELS   +D ++  +     W  GEC G  G FP  YVE 
Sbjct: 5  LYDYDAAEDNELSFFENDKIINIEFVDDDWWLGECHGSRGLFPSNYVEL 53

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 38.0 bits (88), Expect = 1e-05
 Identities = 18/45 (40%), Positives = 23/45 (51%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          F AQ   EL L   D V + +     W EGE  G+ G FP +Y+E
Sbjct: 9  FKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRSYIE 53

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins

 Score = 38.1 bits (89), Expect = 1e-05
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 1  VIHPFDAQANGELSLSIDDYVVV----CQVAPTGWSEGEC--KGQAGWFPLAYVER 50
          V++P+  Q   EL L   DY+ V       +  GW EG     G +G  P  Y E+
Sbjct: 4  VLYPYTPQEEDELELVPGDYIYVSPEELDSSSDGWVEGTSWLTGCSGLLPENYTEK 59

UBASH3 or TULA proteins are also referred to as Suppressor of T cell receptor Signaling (STS) proteins. They contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. In some vertebrates, there are two TULA family proteins, called UBASH3A (also called TULA or STS-2) and UBASH3B (also called TULA-2 or STS-1), which show partly overlapping as well as distinct functions. UBASH3B is widely expressed while UBASH3A is only found in lymphoid cells. UBASH3A facilitates apoptosis induced in T cells through its interaction with the apoptosis-inducing factor AIF. UBASH3B is an active phosphatase while UBASH3A is not. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 38.0 bits (88), Expect = 1e-05
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5  FDAQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          F A+   ELSL   D V +  +    GW  GE  G+ GWFP  YVE
Sbjct: 8  FCARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYVE 53

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212916 cd11983, SH3_Shank2, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 2

 Score = 37.6 bits (87), Expect = 2e-05
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFP 44
          V+  +  Q  GE+ L   D V V  +   G+ EG  +G  GWFP
Sbjct: 5  VVKSYQPQVEGEIPLHKGDRVKVLSIGEGGFWEGSARGHVGWFP 48

Shank2, also called ProSAP1 (Proline-rich synapse-associated protein 1) or CortBP1 (Cortactin-binding protein 1), is found in neurons, glia, endocrine cells, liver, and kidney. It plays a role in regulating dendritic spine volume and branching and postsynaptic clustering. Mutations in the Shank2 gene are associated with autism spectrum disorder and mental retardation. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212766 cd11832, SH3_Shank, Src homology 3 domain of SH3 and multiple ankyrin repeat domains (Shank) proteins

 Score = 37.4 bits (87), Expect = 2e-05
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 4  PFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFP 44
           +  Q  GE+SL   D V V  +   G+ EG  +G+ GWFP
Sbjct: 7  SYSPQEEGEISLHKGDRVKVLSIGEGGFWEGSVRGRTGWFP 47

Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. They bind a variety of membrane and cytosolic proteins, and exist in alternatively spliced isoforms. They are highly enriched in postsynaptic density (PSD) where they interact with the cytoskeleton and with postsynaptic membrane receptors including NMDA and glutamate receptors. They are crucial in the construction and organization of the PSD and dendritic spines of excitatory synapses. There are three members of this family (Shank1, Shank2, Shank3) which show distinct and cell-type specific patterns of expression. Shank1 is brain-specific; Shank2 is found in neurons, glia, endocrine cells, liver, and kidney; Shank3 is widely expressed. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 37.3 bits (87), Expect = 2e-05
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC-KGQAGWFPLAYVE 49
           ++ + A  + E+S    D +   +    GW  G   KGQ G FP  YVE
Sbjct: 4  ALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 37.2 bits (86), Expect = 2e-05
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  FDAQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          F A+   ELSL   D + ++ +    GW  GE  G+ GWFP  YVE
Sbjct: 8  FCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVE 53

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 37.4 bits (86), Expect = 3e-05
 Identities = 19/44 (43%), Positives = 22/44 (50%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
          F      ELS S  D + V +V   GW EG   G+ GWFP  YV
Sbjct: 8  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 36.8 bits (85), Expect = 5e-05
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKG--QAGWFPLAYVE 49
          F+A  N ELSL   D VV+ +     W EG+  G  + G FP++YVE
Sbjct: 9  FNADTNVELSLRKGDRVVLLKQVDQNWYEGKIPGTNRQGIFPVSYVE 55

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212954 cd12021, SH3_p47phox_1, First or N-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 36.1 bits (83), Expect = 6e-05
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           I  ++  +  E++L   D V V + +  GW   + K + GW P +Y+E
Sbjct: 4  AIADYEKSSKSEMALKTGDVVEVVEKSENGWWFCQLKAKRGWVPASYLE 52

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the first SH3 domain (or N-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 36.2 bits (84), Expect = 7e-05
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
          F+ +   ELS S  D + + +     W++GE  G+ G FPL +V
Sbjct: 8  FEGEQEDELSFSEGDVITLKEYVGEEWAKGELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 36.2 bits (84), Expect = 7e-05
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQA--GWFPLAYVER 50
          F      ELSL  DD V + Q    GW   +   ++  GW P AY+E 
Sbjct: 8  FAGSVANELSLKKDDIVYIVQKEDNGWWLAKKLDESKEGWVPAAYLEE 55

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 36.0 bits (83), Expect = 9e-05
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
          + AQ   EL++++ D +   +    GW EGE KG+ G FP  +V
Sbjct: 8  YKAQHEDELTITVGDIITKIKKDDGGWWEGEIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 35.9 bits (83), Expect = 9e-05
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVC--QVAPTGWSEGECKGQAGWFPLAYVE 49
          V+  ++  A  EL+L   D + V   +    GW EGE  G+ G+FP  +V 
Sbjct: 4  VLFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVM 54

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212922 cd11989, SH3_Intersectin1_2, Second Src homology 3 domain (or SH3B) of Intersectin-1

 Score = 35.8 bits (82), Expect = 9e-05
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          ++P+ A+ +  L+ + +D + V +     W  GE +GQ GWFP +YV+
Sbjct: 5  LYPWRAKKDNHLNFNKNDVITVLEQQDMWWF-GEVQGQKGWFPKSYVK 51

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 35.7 bits (82), Expect = 1e-04
 Identities = 19/45 (42%), Positives = 24/45 (53%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          F AQ+  EL+L   D V + +     W EGE  G+ G FP  YVE
Sbjct: 9  FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRVGIFPANYVE 53

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 35.6 bits (82), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVC--QVAPTGWSEGECKGQAGWFPLAYVE 49
          V+ P++AQ   EL++   D V +        GW EGE  G+ G FP  +V+
Sbjct: 4  VLFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFPDNFVK 54

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVC--QVAPTGWSEGECKGQAGWFPLAYVE 49
          V+  ++A+   EL+L   D V +        GW +GE  G+ G FP  +VE
Sbjct: 4  VLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVE 54

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212917 cd11984, SH3_Shank3, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 3

 Score = 35.3 bits (81), Expect = 1e-04
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFP 44
           +  +  Q  GE+ L+  + V V  +   G+ EG  KG+ GWFP
Sbjct: 5  AVKAYSPQGEGEIQLNRGERVKVLSIGEGGFWEGTVKGRTGWFP 48

Shank3, also called ProSAP2 (Proline-rich synapse-associated protein 2), is widely expressed. It plays a role in the formation of dendritic spines and synapses. Haploinsufficiency of the Shank3 gene causes the 22q13 deletion/Phelan-McDermid syndrome, and variants of Shank3 have been implicated in autism spectrum disorder, schizophrenia, and intellectual disability. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 35.5 bits (82), Expect = 1e-04
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFP 44
          ++ F A    EL   + D + +      GW EGE KG+ G FP
Sbjct: 5  LYRFQALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFP 47

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 35.4 bits (81), Expect = 1e-04
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
          + A+   ELSL     V+V +    GW  G   GQ GWFP  YV
Sbjct: 10 YTAEREDELSLVKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212872 cd11939, SH3_ephexin1, Src homology 3 domain of the Rho guanine nucleotide exchange factor, ephexin-1 (also called NGEF or ARHGEF27)

 Score = 34.9 bits (80), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVE 49
          +HP+ +Q   ELSL + D + +      GW  GE     + GWFP + VE
Sbjct: 5  VHPYVSQEPDELSLELADVLNILDKTDDGWIFGERLHDQERGWFPSSVVE 54

Ephexin-1, also called NGEF (neuronal GEF) or ARHGEF27, activates RhoA, Tac1, and Cdc42 by exchanging bound GDP for free GTP. It is expressed mainly in the brain in a region associated with movement control. It regulates the stability of postsynaptic acetylcholine receptor (AChR) clusters and thus, plays a critical role in the maturation and neurotransmission of neuromuscular junctions. Ephexin-1 directly interacts with the ephrin receptor EphA4 and their coexpression enhances the ability of ephexin-1 to activate RhoA. It is required for normal axon growth and EphA-induced growth cone collapse. Ephexin-1 contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 34.8 bits (80), Expect = 2e-04
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          +H ++AQ   +L     D + V       W EG   G+ G FP  +V 
Sbjct: 5  LHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSDGRVGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212926 cd11993, SH3_Intersectin1_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-1

 Score = 35.1 bits (80), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC-----KGQAGWFPLAYVE 49
          VI  + A    +L+L+    +++ +  P GW EGE      K Q GWFP  YV+
Sbjct: 8  VIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGKKRQIGWFPANYVK 61

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 35.0 bits (80), Expect = 2e-04
 Identities = 18/42 (42%), Positives = 20/42 (47%)

Query: 7  AQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
          A+   ELSL     V V +    GW  G   GQ GWFP  YV
Sbjct: 11 AEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 34.8 bits (80), Expect = 3e-04
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 5  FDAQANG--ELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ 51
          +D Q  G  E+S    + +   ++   GW +G C G  G FP  YVE  
Sbjct: 7  YDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCHGHRGLFPANYVELL 55

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212871 cd11938, SH3_ARHGEF16_26, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF16 and ARHGEF26

 Score = 34.4 bits (79), Expect = 3e-04
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFP 44
          +I  + A+   ELSL   D V+V Q    GW  GE    G+ GWFP
Sbjct: 4  IIKAYTAKQPDELSLQQADVVLVLQTESDGWYYGERLRDGERGWFP 49

ARHGEF16, also called ephexin-4, acts as a GEF for RhoG, activating it by exchanging bound GDP for free GTP. RhoG is a small GTPase that is a crucial regulator of Rac in migrating cells. ARHGEF16 interacts directly with the ephrin receptor EphA2 and mediates cell migration and invasion in breast cancer cells by activating RhoG. ARHGEF26, also called SGEF (SH3 domain-containing guanine exchange factor), also activates RhoG. It is highly expressed in liver and may play a role in regulating membrane dynamics. ARHGEF16 and ARHGEF26 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 34.2 bits (79), Expect = 4e-04
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          ++ ++AQ   ELS    D + +   +   W +  C G+ G  P  YVE
Sbjct: 5  LYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCGGKTGLIPSNYVE 52

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212923 cd11990, SH3_Intersectin2_2, Second Src homology 3 domain (or SH3B) of Intersectin-2

 Score = 34.2 bits (78), Expect = 4e-04
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 7  AQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          A+ +  L+ S +D + V +     W  GE  G  GWFP +YV+
Sbjct: 10 AKKDNHLNFSKNDIITVLEQQENWWF-GEVHGGRGWFPKSYVK 51

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212735 cd11801, SH3_JIP1_like, Src homology 3 domain of JNK-interacting proteins 1 and 2, and similar domains

 Score = 34.2 bits (79), Expect = 5e-04
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYV 48
           +H F  +   E+ L I D V V Q A   W EG     GQ G FP AYV
Sbjct: 4  ALHKFIPRHEDEIELDIGDPVYVEQEADDLWCEGTNLRTGQRGIFPAAYV 53

JNK-interacting proteins (JIPs) function as scaffolding proteins for c-Jun N-terminal kinase (JNK) signaling pathways. They bind to components of Mitogen-activated protein kinase (MAPK) pathways such as JNK, MKK, and several MAP3Ks such as MLK and DLK. There are four JIPs (JIP1-4); all contain a JNK binding domain. JIP1 and JIP2 also contain SH3 and Phosphotyrosine-binding (PTB) domains. Both are highly expressed in the brain and pancreatic beta-cells. JIP1 functions as an adaptor linking motor to cargo during axonal transport and also is involved in regulating insulin secretion. JIP2 form complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. The SH3 domain of JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213009 cd12076, SH3_Tks4_2, Second Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 34.2 bits (78), Expect = 5e-04
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
          VI+P+ A+   E++L     V V Q    GW +   +G+ GW P +Y+++
Sbjct: 5  VIYPYTARDQDEINLEKGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLKK 54

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the second SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 33.9 bits (78), Expect = 5e-04
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC-KGQAGWFPLAYV 48
          ++P+ A+    LS +  D + V +     W  GE   G+ GWFP +YV
Sbjct: 5  LYPWRAKKENHLSFAKGDIITVLEQQEM-WWFGELEGGEEGWFPKSYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 33.9 bits (78), Expect = 5e-04
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPT--GWSEGECKGQAGWFPLAYV 48
          ++ F+ Q   +LS    D + V     +   W EG  +G+ G FP  YV
Sbjct: 5  LYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 33.8 bits (77), Expect = 7e-04
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 5  FDAQANGELSLSIDDYVVVCQV--APTGWSEGECKGQAGWFPLAYVERQ 51
          F A+   ELSL   D V +        GW +GE  G+ GWFP  YVE +
Sbjct: 9  FAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEE 57

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 33.5 bits (77), Expect = 8e-04
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          V++ + AQ + ELS+S  D V V +    GW   E  GQ G  P  Y+E
Sbjct: 4  VLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVERNGQKGLVPGTYLE 52

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212980 cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 domain of NADPH oxidase activator 1

 Score = 32.9 bits (75), Expect = 0.001
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 3  HPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
          H + AQ   +L  S  D + +       W EG C G+ G FP  +  R
Sbjct: 6  HDYSAQGPEDLEFSQGDTIDILSEVNQEWLEGHCDGRIGIFPKCFAVR 53

Noxa1 is a homolog of p67phox and is a cytosolic subunit of the nonphagocytic NADPH oxidase complex Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Noxa1 is co-expressed with Nox1 in colon, stomach, uterus, prostate, and vascular smooth muscle cells, consistent with its regulatory role. It does not interact with p40phox, unlike p67phox, making Nox1 activity independent of p40phox, unlike Nox2. Noxa1 contains TPR, PB1, and C-terminal SH3 domains, but lacks the central SH3 domain that is present in p67phox. The TPR domain binds activated GTP-bound Rac. The C-terminal SH3 domain binds the polyproline motif found at the C-terminus of Noxo1, a homolog of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 32.7 bits (75), Expect = 0.001
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          F+A    ELS    D + + +     W EG   G+ G FP++YV+
Sbjct: 8  FNADTGVELSFRKGDVITLTRRVDENWYEGRIGGRQGIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 32.9 bits (75), Expect = 0.001
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          +  ++A    +L     D ++V       W EG+CKG+ G FP A+VE
Sbjct: 5  LFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 32.4 bits (74), Expect = 0.002
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEG--ECKGQAGWFPLAYVE 49
          VI P+  Q+  EL L   D V V +    GW +G  +  G+ G FP ++VE
Sbjct: 4  VIVPYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVE 54

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 32.2 bits (73), Expect = 0.002
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
          ++ F  Q N +L L   D V+V   +   W +G+   + G+FP  +V+R
Sbjct: 5  LYKFLPQENNDLPLQPGDRVMVVDDSNEDWWKGKSGDRVGFFPANFVQR 53

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212878 cd11945, SH3_Endophilin_B1, Src homology 3 domain of Endophilin-B1

 Score = 32.7 bits (74), Expect = 0.002
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVE 49
          V++ +DA  + ELSL  D+ + V  V    + W  GE   Q G  P+ Y+E
Sbjct: 8  VLYDYDAANSTELSLLADEVITVYSVPGMDSDWLMGERGNQKGKVPITYLE 58

Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth factor (NGF) trafficking, neurite outgrowth, mitochondrial outer membrane dynamics, and cell death. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. Endophilin-B1 forms homo- and heterodimers (with endophilin-B2) through its BAR domain. It interacts with amphiphysin 1 and dynamin 1 through its SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 31.9 bits (72), Expect = 0.004
 Identities = 17/48 (35%), Positives = 22/48 (45%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          I+ +    + ELS      + V +    GW EG C G  G FP  YVE
Sbjct: 5  IYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGVTGLFPGNYVE 52

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.72
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.58
KOG2070	661	consensus Guanine nucleotide exchange factor [Nucl	99.49
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.48
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.38
KOG2199	462	consensus Signal transducing adaptor protein STAM/	99.36
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	99.36
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.34
KOG4225	489	consensus Sorbin and SH3 domain-containing protein	99.32
KOG4226	379	consensus Adaptor protein NCK/Dock, contains SH2 a	99.32
KOG1118	366	consensus Lysophosphatidic acid acyltransferase en	99.29
KOG0162	1106	consensus Myosin class I heavy chain [Cytoskeleton	99.23
KOG4226	379	consensus Adaptor protein NCK/Dock, contains SH2 a	99.14
KOG4348	627	consensus Adaptor protein CMS/SETA [Signal transdu	99.09
KOG2856	472	consensus Adaptor protein PACSIN [Signal transduct	99.04
KOG4225	489	consensus Sorbin and SH3 domain-containing protein	98.98
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.93
KOG2546	483	consensus Abl interactor ABI-1, contains SH3 domai	98.92
KOG2996	865	consensus Rho guanine nucleotide exchange factor V	98.9
KOG4348	627	consensus Adaptor protein CMS/SETA [Signal transdu	98.88
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.85
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.82
KOG4792	293	consensus Crk family adapters [Signal transduction	98.8
KOG3655	484	consensus Drebrins and related actin binding prote	98.63
KOG3875	362	consensus Peroxisomal biogenesis protein peroxin [	98.59
KOG3601	222	consensus Adaptor protein GRB2, contains SH2 and S	98.57
KOG1843	473	consensus Uncharacterized conserved protein [Funct	98.55
KOG1702	264	consensus Nebulin repeat protein [Cytoskeleton]	98.35
KOG4773	386	consensus NADPH oxidase [Energy production and con	98.33
KOG3523	695	consensus Putative guanine nucleotide exchange fac	98.32
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	98.23
KOG3775	482	consensus Mitogen-activated protein kinase scaffol	98.15
KOG3632	1335	consensus Peripheral benzodiazepine receptor PRAX-	98.05
KOG2528	490	consensus Sorting nexin SNX9/SH3PX1 and related pr	97.95
KOG2222	848	consensus Uncharacterized conserved protein, conta	97.89
KOG3557	721	consensus Epidermal growth factor receptor kinase	97.84
KOG4792	293	consensus Crk family adapters [Signal transduction	97.66
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	97.63
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	97.6
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	97.49
KOG3771	460	consensus Amphiphysin [Intracellular trafficking,	97.39
KOG4429	421	consensus Uncharacterized conserved protein, conta	97.25
KOG4575	874	consensus TGc (transglutaminase/protease-like) dom	97.24
KOG3601	222	consensus Adaptor protein GRB2, contains SH2 and S	97.12
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	96.77
KOG3632	1335	consensus Peripheral benzodiazepine receptor PRAX-	96.43
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	96.4
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	96.39
KOG3725	375	consensus SH3 domain protein SH3GLB [Signal transd	96.29
smart00287	63	SH3b Bacterial SH3 domain homologues.	95.56
KOG3565	640	consensus Cdc42-interacting protein CIP4 [Cytoskel	94.97
PRK10884	206	SH3 domain-containing protein; Provisional	94.69
KOG3705	580	consensus Glycoprotein 6-alpha-L-fucosyltransferas	94.01
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	94.0
KOG3812	475	consensus L-type voltage-dependent Ca2+ channel, b	93.53
KOG0040	2399	consensus Ca2+-binding actin-bundling protein (spe	91.68
KOG2996	865	consensus Rho guanine nucleotide exchange factor V	90.61
PRK13914	481	invasion associated secreted endopeptidase; Provis	89.28
smart00743	61	Agenet Tudor-like domain present in plant sequence	87.46
COG3103	205	SH3 domain protein [Signal transduction mechanisms	86.57

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.72  E-value=1.9e-17  Score=74.21  Aligned_cols=49  Identities=35%  Similarity=0.635  Sum_probs=44.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE   49 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~   49 (72)
                      |+|+|.++.+++|+|++|+.|.++.....+||.++.+|+.|+||.+|++
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            6899999999999999999999998888999999999999999999985

...

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.58  E-value=6.5e-15  Score=67.32  Aligned_cols=50  Identities=38%  Similarity=0.701  Sum_probs=44.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEE-EcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVC-QVAPTGWSEGECKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~-~~~~~~w~~~~~~g~~G~~P~~~v~~   50 (72)
                      |+++|.+..+++|+|.+||.+.|+ .....+||.++.+|+.|+||.+++++
T Consensus         4 a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~   54 (55)
T PF07653_consen    4 AIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEE   54 (55)
T ss_dssp             ESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEE
T ss_pred             EeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEE
Confidence            468999999999999999999999 77778999999999999999999975

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]

Probab=99.49  E-value=1.8e-14  Score=88.35  Aligned_cols=51  Identities=41%  Similarity=0.752  Sum_probs=48.1

Q ss_pred             ccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         2 ~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      -|.|.+.+.+||+|.+||+|.|.+..+.|||.|+.+|+.||||++||.++.
T Consensus        23 kf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik   73 (661)
T KOG2070|consen   23 KFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK   73 (661)
T ss_pred             EeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence            478999999999999999999999989999999999999999999999874

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.48  E-value=6.9e-14  Score=62.29  Aligned_cols=45  Identities=31%  Similarity=0.598  Sum_probs=40.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPL   45 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~   45 (72)
                      |+|+|.+...++|+|.+|+.+.|++..+.+||.++.  +++.|+||+
T Consensus         2 Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    2 ALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             ESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            689999999999999999999999888889999995  479999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>smart00326 SH3 Src homology 3 domains

Probab=99.38  E-value=2.1e-12  Score=58.69  Aligned_cols=50  Identities=34%  Similarity=0.620  Sum_probs=45.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeC-CeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-GQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~-g~~G~~P~~~v~~   50 (72)
                      |+++|.+....+|.+.+|+.+.++.....+||.++.. ++.|+||.+++..
T Consensus         7 a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~   57 (58)
T smart00326        7 ALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE   57 (58)
T ss_pred             EeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence            4789999999999999999999998878899999965 9999999999875

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=99.36  E-value=2e-13  Score=81.87  Aligned_cols=51  Identities=27%  Similarity=0.515  Sum_probs=48.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|||++...+||+|++||+|.|++.....||+|...+..|+||.+||...
T Consensus       220 ALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~  270 (462)
T KOG2199|consen  220 ALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTAD  270 (462)
T ss_pred             hhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhh
Confidence            689999999999999999999999999999999999999999999999864

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=2.5e-13  Score=86.85  Aligned_cols=52  Identities=33%  Similarity=0.604  Sum_probs=48.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      ++|||.++++++|+|.+|++|.|+.++++.||.|.++|..|+||++||....
T Consensus      1058 amYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~t 1109 (1118)
T KOG1029|consen 1058 AMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQT 1109 (1118)
T ss_pred             EeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCccccccccc
Confidence            5899999999999999999999999999999999999999999999997653

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.34  E-value=5e-12  Score=56.77  Aligned_cols=49  Identities=37%  Similarity=0.646  Sum_probs=43.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCC-eEEEecCCCeE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKG-QAGWFPLAYVE   49 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~   49 (72)
                      ++++|.+....+|++.+|+.+.+++....+||.++..+ +.|+||.++++
T Consensus         4 a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           4 ALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            47899999999999999999999988778999999644 99999998875

>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]

Probab=99.32  E-value=6.6e-12  Score=76.14  Aligned_cols=53  Identities=34%  Similarity=0.597  Sum_probs=50.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|+++...||.|.+||+|.|+++.+..|+.|...|+.|+||++|++.+..
T Consensus       235 alf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~  287 (489)
T KOG4225|consen  235 ALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP  287 (489)
T ss_pred             heeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence            57999999999999999999999999999999999999999999999998865

>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=99.32  E-value=3.3e-12  Score=74.03  Aligned_cols=53  Identities=34%  Similarity=0.662  Sum_probs=48.9

Q ss_pred             cccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979            3 HPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         3 ~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |.|.++..+||++.+|..+.|+++...|||+|..+|+.||||++|+.+....+
T Consensus       114 f~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~  166 (379)
T KOG4226|consen  114 FNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSA  166 (379)
T ss_pred             EeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhcccc
Confidence            67899999999999999999999999999999999999999999999876543

>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.29  E-value=1.7e-12  Score=75.94  Aligned_cols=53  Identities=30%  Similarity=0.612  Sum_probs=50.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      ++|||++.+..||.|+.||+|.++...+++||.|...|..|+||.+|+..+..
T Consensus       311 alYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvp  363 (366)
T KOG1118|consen  311 ALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVP  363 (366)
T ss_pred             eeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEecc
Confidence            58999999999999999999999999999999999999999999999998754

>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=99.23  E-value=4.8e-12  Score=80.90  Aligned_cols=50  Identities=30%  Similarity=0.588  Sum_probs=47.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   50 (72)
                      |+|+|.++..+||+|++|++|.|+.++.+|||.|+.+|+.||||.+||.+
T Consensus      1056 A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1056 ALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred             eeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence            57999999999999999999999999999999999999999999999864

>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=99.14  E-value=4.1e-11  Score=69.58  Aligned_cols=56  Identities=21%  Similarity=0.451  Sum_probs=49.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc--CCCCcEEEE-eCCeEEEecCCCeEEcccCCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV--APTGWSEGE-CKGQAGWFPLAYVERQEKAPA   56 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~--~~~~w~~~~-~~g~~G~~P~~~v~~~~~~~~   56 (72)
                      |+|.|.+.+..||+|.+|+.+.|+++  .++.||.++ .+|+.|++|.+|+..+...+.
T Consensus       196 aLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~  254 (379)
T KOG4226|consen  196 ALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPS  254 (379)
T ss_pred             EEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCcc
Confidence            57999999999999999999998853  566899999 799999999999999876553

>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]

Probab=99.09  E-value=1.6e-11  Score=74.86  Aligned_cols=53  Identities=26%  Similarity=0.581  Sum_probs=49.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      +.|.|.+++.++|.|+.||+|.++.....|||.|.++|..|.||.+|+.++..
T Consensus       105 v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~  157 (627)
T KOG4348|consen  105 VTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPT  157 (627)
T ss_pred             EEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCC
Confidence            35789999999999999999999988899999999999999999999998864

>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.04  E-value=2.6e-11  Score=72.54  Aligned_cols=51  Identities=27%  Similarity=0.533  Sum_probs=45.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEE-EcCCCCcEEEEeC-CeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVC-QVAPTGWSEGECK-GQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~-~~~~~~w~~~~~~-g~~G~~P~~~v~~~   51 (72)
                      |+|||.++..++|+|+.|+.+..+ +.+.-||+.|+++ |+.|++|.+||+.+
T Consensus       419 aLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  419 ALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            589999999999999999999766 5667799999965 99999999999754

>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]

Probab=98.98  E-value=4.9e-10  Score=68.23  Aligned_cols=50  Identities=32%  Similarity=0.544  Sum_probs=46.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~   50 (72)
                      |+|.|.+++.++|.|..||+|.|+++.++||+.|+  +.|.-|.||.+||..
T Consensus       437 Aly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  437 ALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             eccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence            68999999999999999999999999999999996  789999999999964

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.93  E-value=6.7e-10  Score=72.09  Aligned_cols=53  Identities=26%  Similarity=0.542  Sum_probs=48.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCC-eEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKG-QAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..+||+|.++.+|..+++...+||+|.+.| ..+|||.+||+++..
T Consensus       779 AL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~  832 (1267)
T KOG1264|consen  779 ALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST  832 (1267)
T ss_pred             hhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence            68999999999999999999999999888999999875 559999999998865

>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=1.1e-09  Score=66.57  Aligned_cols=52  Identities=33%  Similarity=0.530  Sum_probs=48.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      ++|||.+...++|+|..+-+|.++++++++||.|...+..|+||.+|++.+.
T Consensus       428 ~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  428 AIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             hhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence            5799999999999999999999999999999999999999999999998653

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]

Probab=98.90  E-value=1.1e-09  Score=69.12  Aligned_cols=50  Identities=40%  Similarity=0.698  Sum_probs=43.0

Q ss_pred             ccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEEeCCeEEEecCCCeEEc
Q 042979            2 IHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         2 ~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      -|||-+..-.+|+++.||++.|..+.  +.|||+|..+|+.||||.+||++-
T Consensus       811 rYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~  862 (865)
T KOG2996|consen  811 RYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEED  862 (865)
T ss_pred             ccccCCCchhhcccccCCEEEEehhccccCceecceecCccccccccccccc
Confidence            47788888889999999999988543  358999999999999999999864

>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]

Probab=98.88  E-value=1.2e-09  Score=66.87  Aligned_cols=51  Identities=31%  Similarity=0.586  Sum_probs=44.6

Q ss_pred             ccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            2 IHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         2 ~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      +|-|++++.++|.++.||++.++.++  +-|||.|.++|+.|+||-+|+..+.
T Consensus       267 ~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~  319 (627)
T KOG4348|consen  267 KFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ  319 (627)
T ss_pred             eeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence            57799999999999999999877543  3389999999999999999998765

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=8.4e-10  Score=68.95  Aligned_cols=52  Identities=23%  Similarity=0.397  Sum_probs=45.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCC---CcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPT---GWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~---~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |++||+++..+||+|..||.+.|+++++.   .||.++.+|+.|++|.+|+-...
T Consensus       688 AlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyP  742 (752)
T KOG0515|consen  688 ALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYP  742 (752)
T ss_pred             EeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCc
Confidence            57899999999999999999999976433   68888999999999999997664

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=2.3e-09  Score=69.28  Aligned_cols=53  Identities=32%  Similarity=0.626  Sum_probs=46.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|.|.+.....|+|.+||+|.|+++- .-||.|...|..||||++||.++...
T Consensus       818 A~y~wrakke~dLsFskgd~I~Vlekq-emwW~G~v~g~~GwFPksYVk~~~~~  870 (1118)
T KOG1029|consen  818 ALYPWRAKKENDLSFSKGDTITVLEKQ-EMWWFGEVAGEIGWFPKSYVKEVGAI  870 (1118)
T ss_pred             hhccccccccccccccCCCeeeeehhc-cceecccccCccCcCcHHhhhhcccc
Confidence            468899999999999999999999874 45999999999999999999966443

>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]

Probab=98.80  E-value=2.1e-09  Score=61.16  Aligned_cols=53  Identities=17%  Similarity=0.463  Sum_probs=47.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~   53 (72)
                      ++|+|.+....+|.|++|+++.|+.+....||.++ ..|+.|.+|..||+....
T Consensus       129 ~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~  182 (293)
T KOG4792|consen  129 ALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRP  182 (293)
T ss_pred             eeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhh
Confidence            47899999999999999999999999888999999 799999999999986643

>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]

Probab=98.63  E-value=1.2e-08  Score=62.78  Aligned_cols=51  Identities=27%  Similarity=0.543  Sum_probs=46.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|++-...++.|..++.|.++...+.|||.|. -+|+.|+||.+||..+
T Consensus       432 A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  432 ALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             ccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            57999999999999999999999988889999999 6899999999999764

>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=1.8e-08  Score=59.41  Aligned_cols=57  Identities=25%  Similarity=0.279  Sum_probs=44.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC-----CCCcEEEE-e-CCeEEEecCCCeEEcccCCCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA-----PTGWSEGE-C-KGQAGWFPLAYVERQEKAPAS   57 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~-----~~~w~~~~-~-~g~~G~~P~~~v~~~~~~~~~   57 (72)
                      |+|||.+.++.|++|++||++.|..++     ...||..+ + .+..|+||.+||+.+.+.+++
T Consensus       273 A~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~rq~qs  336 (362)
T KOG3875|consen  273 ALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGRQPQS  336 (362)
T ss_pred             HHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhcCCCC
Confidence            579999999999999999999877332     22466666 5 677899999999998774444

>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=98.57  E-value=5e-08  Score=54.83  Aligned_cols=50  Identities=28%  Similarity=0.472  Sum_probs=46.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   50 (72)
                      ++|+|.+..+.++.+++|+.+.++...+..||.|..-|+.|+||.+++..
T Consensus       168 a~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p  217 (222)
T KOG3601|consen  168 ALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAP  217 (222)
T ss_pred             hcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCccccc
Confidence            46889999999999999999999998889999999999999999999864

>KOG1843 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=3.3e-08  Score=60.09  Aligned_cols=50  Identities=26%  Similarity=0.559  Sum_probs=44.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCC--CcEEEEeCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPT--GWSEGECKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~--~w~~~~~~g~~G~~P~~~v~~   50 (72)
                      ++|+|.++....+.|++||+|.++.+.+.  .||+++.+++.|+||.+|+..
T Consensus       421 a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  421 ALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             eeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence            47899999999999999999998866444  699999999999999999863

>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]

Probab=98.35  E-value=7.8e-07  Score=50.14  Aligned_cols=50  Identities=32%  Similarity=0.548  Sum_probs=44.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~   50 (72)
                      |+|||.++..++++|.-||.|.-+...+.||..|+  +.|..|-+|.+|++-
T Consensus       212 a~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~  263 (264)
T KOG1702|consen  212 AFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF  263 (264)
T ss_pred             hhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence            57899999999999999999987777788898888  589999999999874

>KOG4773 consensus NADPH oxidase [Energy production and conversion]

Probab=98.33  E-value=6.1e-08  Score=57.92  Aligned_cols=56  Identities=21%  Similarity=0.435  Sum_probs=50.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPA   56 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~   56 (72)
                      ++++|.++...||.+..|+++.++.+++.+||.|+.++.+|++|..|+..+...|.
T Consensus       180 a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpe  235 (386)
T KOG4773|consen  180 ASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPE  235 (386)
T ss_pred             hhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCcc
Confidence            35789999999999999999998888899999999999999999999998876666

>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]

Probab=98.32  E-value=3.7e-08  Score=62.29  Aligned_cols=52  Identities=44%  Similarity=0.875  Sum_probs=46.8

Q ss_pred             ccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEccc
Q 042979            2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         2 ~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~   53 (72)
                      ...|.+..+++|.+..+|++.|+++..+||+.|.  .+|..||||..|++++..
T Consensus       614 ~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~  667 (695)
T KOG3523|consen  614 VHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN  667 (695)
T ss_pred             eeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence            3568999999999999999999999999999998  589999999999998743

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=98.23  E-value=1e-06  Score=57.13  Aligned_cols=51  Identities=25%  Similarity=0.505  Sum_probs=42.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCC-CCcEEEE-eCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAP-TGWSEGE-CKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~-~~w~~~~-~~g~~G~~P~~~v~~~~   52 (72)
                      |+|||.+.+...|++.+|+.+.|+.-.. ..|..++ .+|+ ||+|.+|+..++
T Consensus        95 ALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvN  147 (1157)
T KOG4278|consen   95 ALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVN  147 (1157)
T ss_pred             eeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-cccccccccccc
Confidence            5899999999999999999999995433 4488888 5666 999999998764

>KOG3775 consensus Mitogen-activated protein kinase scaffold protein JIP [Signal transduction mechanisms]

Probab=98.15  E-value=1.8e-06  Score=52.42  Aligned_cols=54  Identities=31%  Similarity=0.454  Sum_probs=47.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~~   54 (72)
                      +++.|.+..++||.+.+||.+.|..+.+..|+.|.  +.|+.|+||..|+.++...
T Consensus       267 ~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~  322 (482)
T KOG3775|consen  267 AVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP  322 (482)
T ss_pred             hhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCc
Confidence            35678999999999999999999988888899998  6899999999999988654

>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]

Probab=98.05  E-value=4.3e-06  Score=55.85  Aligned_cols=52  Identities=25%  Similarity=0.417  Sum_probs=43.6

Q ss_pred             CccccCCC--------CCCccccCCCCEEEEE-EcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQ--------ANGELSLSIDDYVVVC-QVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~--------~~~~l~~~~g~~i~v~-~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |++||++.        ...||.|+.|++|.|+ .++..|+|.|..+|+.|++|+++|.++.
T Consensus      1143 AlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1143 ALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred             eeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccccccccccccccccccc
Confidence            46788752        2247999999999998 6677899999999999999999999864

>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=6.5e-06  Score=50.88  Aligned_cols=52  Identities=29%  Similarity=0.601  Sum_probs=46.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEE-EcCCCCcEEEE-eCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVC-QVAPTGWSEGE-CKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~-~~~~~~w~~~~-~~g~~G~~P~~~v~~~~   52 (72)
                      ++|+|...+..++++..++.+.+. +....+||.+. ..|..|+||..|++...
T Consensus         7 amyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~   60 (490)
T KOG2528|consen    7 AMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR   60 (490)
T ss_pred             hhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence            579999999999999999999888 45567899999 69999999999999875

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]

Probab=97.89  E-value=3.4e-06  Score=53.01  Aligned_cols=51  Identities=27%  Similarity=0.540  Sum_probs=45.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+.||.....++|.|+++|++.|+.+.+...|-|..+|.+||||..+|+.+
T Consensus       553 al~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvell  603 (848)
T KOG2222|consen  553 ALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELL  603 (848)
T ss_pred             HHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHH
Confidence            356888888999999999999999877788889999999999999888755

>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]

Probab=97.84  E-value=2e-06  Score=54.99  Aligned_cols=51  Identities=22%  Similarity=0.365  Sum_probs=44.1

Q ss_pred             ccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEccc
Q 042979            2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         2 ~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~   53 (72)
                      .|||.+.+..+|++.+++++.|+.. ...||.++ ..|+.|++|++.+..+..
T Consensus       506 ~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~  557 (721)
T KOG3557|consen  506 LYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQP  557 (721)
T ss_pred             ehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCC
Confidence            6899999999999999999987765 46799999 689999999998887643

>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]

Probab=97.66  E-value=0.0001  Score=42.46  Aligned_cols=43  Identities=33%  Similarity=0.492  Sum_probs=38.9

Q ss_pred             CCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979           10 NGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus        10 ~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      ...|.+++|+++.|.+..-.|-|.|.++|+.|.||..||....
T Consensus       243 kTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d  285 (293)
T KOG4792|consen  243 KTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTD  285 (293)
T ss_pred             hhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeec
Confidence            4569999999999999989999999999999999999998664

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=97.63  E-value=5.9e-05  Score=48.46  Aligned_cols=49  Identities=27%  Similarity=0.464  Sum_probs=40.9

Q ss_pred             ccccCCCCCCccccCCCCEEEEE-EcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979            2 IHPFDAQANGELSLSIDDYVVVC-QVAPTGWSEGECKGQAGWFPLAYVER   50 (72)
Q Consensus         2 ~~~~~~~~~~~l~~~~g~~i~v~-~~~~~~w~~~~~~g~~G~~P~~~v~~   50 (72)
                      +|...+....++.+..|.++.-+ .....||..|+++|..|++|.+||+.
T Consensus       762 lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~  811 (812)
T KOG1451|consen  762 LYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEP  811 (812)
T ss_pred             eeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCc
Confidence            45556677789999999998755 56778999999999999999999974

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=97.60  E-value=2e-05  Score=49.71  Aligned_cols=51  Identities=16%  Similarity=0.375  Sum_probs=40.5

Q ss_pred             CccccCCCCC-------CccccCCCCEEEEEEcCCCCcEEEEeC-----CeEEEecCCCeEEc
Q 042979            1 VIHPFDAQAN-------GELSLSIDDYVVVCQVAPTGWSEGECK-----GQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~-------~~l~~~~g~~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~~~   51 (72)
                      |++||++...       ..+.|++||++.|+.+++..||.++..     +..|++|+...++.
T Consensus       219 a~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qer  281 (542)
T KOG0609|consen  219 ALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQER  281 (542)
T ss_pred             hhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHH
Confidence            4678877654       359999999999999999999999843     45689998777654

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=97.49  E-value=2.2e-05  Score=49.03  Aligned_cols=51  Identities=22%  Similarity=0.495  Sum_probs=43.8

Q ss_pred             CccccCCCCCCccccCCCCE-EEEEEcCCCCcEEEE-e-CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDY-VVVCQVAPTGWSEGE-C-KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~-i~v~~~~~~~w~~~~-~-~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+..+.+|+|.+|++ ..+++..+..||.++ . .+..|++|.|++...
T Consensus        16 alyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   16 ALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             EeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence            46899999999999999999 667777778899988 3 788899999999864

>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=8e-05  Score=46.35  Aligned_cols=49  Identities=24%  Similarity=0.225  Sum_probs=39.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEE-cCCCCcEEEEeCCeEEEecCCCeE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQ-VAPTGWSEGECKGQAGWFPLAYVE   49 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~-~~~~~w~~~~~~g~~G~~P~~~v~   49 (72)
                      ++|+|.+...++|+|+.|+.|.|+. .+...||.|+++|..+-++.+++.
T Consensus       405 a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~  454 (460)
T KOG3771|consen  405 ALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP  454 (460)
T ss_pred             ccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence            4789999999999999999999885 344569999988877766666664

>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]

Probab=97.25  E-value=0.00012  Score=43.63  Aligned_cols=50  Identities=22%  Similarity=0.223  Sum_probs=43.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   50 (72)
                      +.|+|++...++|...+|+...+-+....+||.|++.|.-+-||..++++
T Consensus       368 afYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEe  417 (421)
T KOG4429|consen  368 AFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEE  417 (421)
T ss_pred             hhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHH
Confidence            46889999999999999999877777788999999998888888877754

>KOG4575 consensus TGc (transglutaminase/protease-like) domain-containing protein involved in cytokinesis [Cell cycle control, cell division, chromosome partitioning]

Probab=97.24  E-value=0.00063  Score=44.28  Aligned_cols=52  Identities=17%  Similarity=0.364  Sum_probs=41.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   52 (72)
                      |+|.+.++..++|.|..||.+..++..+..||-+..  +...|+||.+||..+.
T Consensus        13 A~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd   66 (874)
T KOG4575|consen   13 ALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLD   66 (874)
T ss_pred             eeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeecc
Confidence            457778888999999999999888876666776663  5567999999997664

>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]

Probab=97.12  E-value=5.9e-05  Score=42.75  Aligned_cols=50  Identities=22%  Similarity=0.370  Sum_probs=41.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc-CCCCcEEEEeCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV-APTGWSEGECKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~   50 (72)
                      ++++|.....+||.|.+|+.+.++.. +.-.|+.....|..|++|.++...
T Consensus         5 a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~   55 (222)
T KOG3601|consen    5 AKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM   55 (222)
T ss_pred             hhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence            35788899999999999999987754 334688888999999999988843

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=96.77  E-value=0.0051  Score=41.10  Aligned_cols=46  Identities=26%  Similarity=0.289  Sum_probs=38.0

Q ss_pred             ccCCCCCCccccCCCCEEEEEEcCC-CCcEEEE--eCCeEEEecCCCeE
Q 042979            4 PFDAQANGELSLSIDDYVVVCQVAP-TGWSEGE--CKGQAGWFPLAYVE   49 (72)
Q Consensus         4 ~~~~~~~~~l~~~~g~~i~v~~~~~-~~w~~~~--~~g~~G~~P~~~v~   49 (72)
                      +|+...++.|.+++||.|.|++... ..||+|.  ++++.|.||.+-+.
T Consensus       382 ~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  382 TYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             eccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            4667788899999999999886544 4699996  68899999998776

>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]

Probab=96.43  E-value=0.0092  Score=40.91  Aligned_cols=53  Identities=25%  Similarity=0.495  Sum_probs=42.2

Q ss_pred             ccccCC------CCCCccccCCCCEEEEE-EcCCCCcEEEE-eCCeEEEecCCCeEEcccC
Q 042979            2 IHPFDA------QANGELSLSIDDYVVVC-QVAPTGWSEGE-CKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         2 ~~~~~~------~~~~~l~~~~g~~i~v~-~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~   54 (72)
                      .|+|++      ....+|.+..|+.|+|. ..+..+++.|. ..|+.|++|.+||+.+.+.
T Consensus       453 rySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~d~  513 (1335)
T KOG3632|consen  453 RYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVTDT  513 (1335)
T ss_pred             EEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEeccc
Confidence            456665      23457999999999998 45667899999 6999999999999987553

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=96.40  E-value=0.0078  Score=29.83  Aligned_cols=43  Identities=12%  Similarity=0.115  Sum_probs=28.5

Q ss_pred             CCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEc
Q 042979            9 ANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQ   51 (72)
Q Consensus         9 ~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~   51 (72)
                      +...|.+.+|+.+.|++.....-|.++ ..|+-|+++.+++-..
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~   72 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL   72 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence            345799999999999988778878888 6999999999887544

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=96.39  E-value=0.017  Score=25.70  Aligned_cols=37  Identities=24%  Similarity=0.512  Sum_probs=28.3

Q ss_pred             cccCCCCEEEEEEcCCCC-cEEEE-eCCeEEEecCCCeE
Q 042979           13 LSLSIDDYVVVCQVAPTG-WSEGE-CKGQAGWFPLAYVE   49 (72)
Q Consensus        13 l~~~~g~~i~v~~~~~~~-w~~~~-~~g~~G~~P~~~v~   49 (72)
                      -.+..|+.+.++.....+ |++.+ .++..||+...++.
T Consensus        17 ~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   17 GQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            456788999888664444 99994 79999999988764

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]

Probab=96.29  E-value=0.00057  Score=40.22  Aligned_cols=51  Identities=31%  Similarity=0.524  Sum_probs=42.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc--CCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV--APTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      ++|||++..+.++++..+++|.|...  .+..|.-|...++.|-+|-.|++.+
T Consensus       322 VlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  322 VLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             eeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence            47999999999999999999987753  3456988888899999998887643

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=95.56  E-value=0.059  Score=24.46  Aligned_cols=36  Identities=31%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             cccCCCCEEEEEEcCCCCcEEEEe-CCeEEEecCCCe
Q 042979           13 LSLSIDDYVVVCQVAPTGWSEGEC-KGQAGWFPLAYV   48 (72)
Q Consensus        13 l~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v   48 (72)
                      -.+..|+.+.++.....+|++.+. +|..||++..++
T Consensus        25 ~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       25 GTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            447789999888765448999885 599999976544

>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]

Probab=94.97  E-value=0.0044  Score=40.55  Aligned_cols=51  Identities=24%  Similarity=0.611  Sum_probs=42.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEE-cCCCCcEEEE--eCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQ-VAPTGWSEGE--CKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~-~~~~~w~~~~--~~g~~G~~P~~~v~~~   51 (72)
                      ++|.|.+.+..++.+..|+++.+++ ....+|=+++  .++..|++|.+|+...
T Consensus       583 a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~  636 (640)
T KOG3565|consen  583 ALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT  636 (640)
T ss_pred             cccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence            4688999999999999999988774 4556787887  6888999999998765

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.69  E-value=0.058  Score=30.82  Aligned_cols=39  Identities=26%  Similarity=0.478  Sum_probs=31.0

Q ss_pred             cccCCCCEEEEEEcCC-CCcEEEE-eCCeEEEecCCCeEEc
Q 042979           13 LSLSIDDYVVVCQVAP-TGWSEGE-CKGQAGWFPLAYVERQ   51 (72)
Q Consensus        13 l~~~~g~~i~v~~~~~-~~w~~~~-~~g~~G~~P~~~v~~~   51 (72)
                      -.+..|+.+.++.... .+|...+ .+|+.||++..++...
T Consensus        48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~   88 (206)
T PRK10884         48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT   88 (206)
T ss_pred             EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence            4577899998886554 5799998 6899999999887654

>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.01  E-value=0.047  Score=34.38  Aligned_cols=49  Identities=29%  Similarity=0.354  Sum_probs=38.0

Q ss_pred             ccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEE
Q 042979            2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVER   50 (72)
Q Consensus         2 ~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~   50 (72)
                      +++..++...++.++.||.+.|-...-.|.-+|+  ..++.|+||+--+++
T Consensus       515 i~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre  565 (580)
T KOG3705|consen  515 IEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE  565 (580)
T ss_pred             EEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence            4567788888999999999988866555666666  467889999876665

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=94.00  E-value=0.25  Score=21.98  Aligned_cols=35  Identities=23%  Similarity=0.451  Sum_probs=26.4

Q ss_pred             cccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCe
Q 042979           13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV   48 (72)
Q Consensus        13 l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v   48 (72)
                      ..+..|..+.+... ..+|.+.+.+|..||++...+
T Consensus        19 ~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence            55667777777643 568999999999999987554

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>KOG3812 consensus L-type voltage-dependent Ca2+ channel, beta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.53  E-value=0.031  Score=34.39  Aligned_cols=35  Identities=17%  Similarity=0.380  Sum_probs=28.6

Q ss_pred             CccccCCCCEEEEEEcCCCCcEEEE--e-CCeEEEecC
Q 042979           11 GELSLSIDDYVVVCQVAPTGWSEGE--C-KGQAGWFPL   45 (72)
Q Consensus        11 ~~l~~~~g~~i~v~~~~~~~w~~~~--~-~g~~G~~P~   45 (72)
                      ..++|...|.+.|-++-+..||-|+  . .+..||+|.
T Consensus        80 ~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   80 HAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             ceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence            3588899999988888889999999  2 445699986

>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]

Probab=91.68  E-value=0.0019  Score=45.77  Aligned_cols=53  Identities=19%  Similarity=0.439  Sum_probs=45.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      ++|+|....+-+.+.++||++.++......||.+++..+.|++|..|+..+..
T Consensus       973 alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~ 1025 (2399)
T KOG0040|consen  973 ALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDP 1025 (2399)
T ss_pred             HHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhcc
Confidence            46888888888999999999887777778899999999999999999987644

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]

Probab=90.61  E-value=0.21  Score=33.06  Aligned_cols=45  Identities=27%  Similarity=0.405  Sum_probs=32.9

Q ss_pred             CccccCCCCEEEEEE-cCCCCcEEEEe--CCeEEEecCCCeEEcccCC
Q 042979           11 GELSLSIDDYVVVCQ-VAPTGWSEGEC--KGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus        11 ~~l~~~~g~~i~v~~-~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~~   55 (72)
                      .-+.++.|+++.+.. .....||.|+.  ....|+||++-+..-...|
T Consensus       625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vp  672 (865)
T KOG2996|consen  625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVP  672 (865)
T ss_pred             CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCC
Confidence            358889999987764 44557999993  5677999998877554434

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=89.28  E-value=1.1  Score=28.98  Aligned_cols=38  Identities=21%  Similarity=0.367  Sum_probs=30.3

Q ss_pred             cccCCCCEEEEEEcCCCCcEEEEe-CCeEEEecCCCeEE
Q 042979           13 LSLSIDDYVVVCQVAPTGWSEGEC-KGQAGWFPLAYVER   50 (72)
Q Consensus        13 l~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~   50 (72)
                      -.+..|+.+.++.....+|++.+. +|+.||+-..|+..
T Consensus       103 gsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~  141 (481)
T PRK13914        103 TSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD  141 (481)
T ss_pred             eeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccC
Confidence            457789998887544668999997 69999998888875

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=87.46  E-value=1.4  Score=19.83  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=18.2

Q ss_pred             ccCCCCEEEEEEcCCCCcEEEE
Q 042979           14 SLSIDDYVVVCQVAPTGWSEGE   35 (72)
Q Consensus        14 ~~~~g~~i~v~~~~~~~w~~~~   35 (72)
                      .|.+|+.+.+.......||.|+
T Consensus         2 ~~~~G~~Ve~~~~~~~~W~~a~   23 (61)
T smart00743        2 DFKKGDRVEVFSKEEDSWWEAV   23 (61)
T ss_pred             CcCCCCEEEEEECCCCEEEEEE
Confidence            4788999988876677899998

Domain in plant sequences with possible chromatin-associated functions.

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=86.57  E-value=1.9  Score=24.81  Aligned_cols=39  Identities=18%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             cccCCCCEEEEEEcCCC-CcEEEE-eCCeEEEecCCCeEEc
Q 042979           13 LSLSIDDYVVVCQVAPT-GWSEGE-CKGQAGWFPLAYVERQ   51 (72)
Q Consensus        13 l~~~~g~~i~v~~~~~~-~w~~~~-~~g~~G~~P~~~v~~~   51 (72)
                      =.++.|+.+.|+..... +|...+ .+|..|||+...+...
T Consensus        48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e   88 (205)
T COG3103          48 GSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSE   88 (205)
T ss_pred             eEecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccc
Confidence            45788999998865444 798988 5899999988666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	72
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		2e-06
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		2e-06
1x69_A	79	Solution Structures Of The Sh3 Domain Of Human Src		7e-06
2xmf_A	60	Myosin 1e Sh3 Length = 60		5e-05
1uff_A	93	Solution Structure Of The First Sh3 Domain Of Human		1e-04
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		2e-04
1io6_A	59	Growth Factor Receptor-Bound Protein 2 (Grb2) C-Ter		2e-04
1gcq_A	61	Crystal Structure Of Vav And Grb2 Sh3 Domains Lengt		2e-04
3ulr_B	65	Lysozyme Contamination Facilitates Crystallization		2e-04
2vvk_A	56	Grb2 Sh3c (1) Length = 56		2e-04
2d1x_A	66	The Crystal Structure Of The Cortactin-Sh3 Domain A		2e-04
1gri_A	217	Grb2 Length = 217		2e-04
2vwf_A	58	Grb2 Sh3c (2) Length = 58		2e-04
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		3e-04
3c0c_A	73	X-Ray Crystal Structure Of The Rat Endophilin A2 Sh		3e-04
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		4e-04
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		4e-04
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		4e-04
4iim_A	70	Crystal Structure Of The Second Sh3 Domain Of Itsn1		7e-04
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		7e-04
3iql_A	71	Crystal Structure Of The Rat Endophilin-A1 Sh3 Doma		8e-04
2nwm_A	65	Solution Structure Of The First Sh3 Domain Of Human		9e-04

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          ++ +DAQ   EL+    D ++V Q  P GW EGE  G+ GW P  YV+
Sbjct: 10 LYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 57

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          ++ +DAQ   EL+    D ++V Q  P GW EGE  G+ GW P  YV+
Sbjct: 9  LYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56

>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src Substrate Cortactin Length = 79

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
          ++ + A  + E+S   DD +   ++   GW  G CKG+ G FP  YVE ++  P+S
Sbjct: 23 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS 78

>pdb|2XMF|A Chain A, Myosin 1e Sh3 Length = 60

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
          ++ +DAQ   ELS + +D + + +  P+GW  G  +G+ G FP  YV +
Sbjct: 11 LYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59

>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Intersectin2 (Kiaa1256) Length = 93

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQ--VAPTGWSEGECKGQAGWFPLAYVER-----QEKA 54
          ++PF+A+ + E+S +  D + V +  V   GW  G  +G  GWFP  YVE+      EKA
Sbjct: 11 LYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENEKA 70
Query: 55 PASKIA 60
           + K A
Sbjct: 71 VSPKKA 76

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKA 54
          F      ELS S  D + V +V   GW EG   G+ GWFP  YV R+ KA
Sbjct: 17 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV-REVKA 65

>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal Sh3 Domain Complexed With A Ligand Peptide (Nmr, Minimized Mean Structure) Length = 59

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
          +  FD Q +GEL     D++ V   +   W +G C GQ G FP  YV
Sbjct: 8  LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54

>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains Length = 61

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
          +  FD Q +GEL     D++ V   +   W +G C GQ G FP  YV
Sbjct: 8  LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54

>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A Hetero- Trimericcortactin:arg:lysozyme Complex Length = 65

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52
          ++ + A  + E+S   DD +   ++   GW  G CKG+ G FP  YVE ++
Sbjct: 15 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 65

>pdb|2VVK|A Chain A, Grb2 Sh3c (1) Length = 56

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
          +  FD Q +GEL     D++ V   +   W +G C GQ G FP  YV
Sbjct: 6  LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52

>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Peptide Complex Length = 66

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52
          ++ + A  + E+S   DD +   ++   GW  G CKG+ G FP  YVE ++
Sbjct: 16 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 66

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 5   FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
           FD Q +GEL     D++ V   +   W +G C GQ G FP  YV
Sbjct: 167 FDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

>pdb|2VWF|A Chain A, Grb2 Sh3c (2) Length = 58

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYV 48
          +  FD Q +GEL     D++ V   +   W +G C GQ G FP  YV
Sbjct: 8  LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          F      ELS S  D + V +V   GW EG   G+ GWFP  YV 
Sbjct: 15 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59

>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain Length = 73

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          ++ F+ + +GEL     D + +       W EG   GQ+G+FPL+YV+
Sbjct: 19 LYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQ 66

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          F      ELS S  D + V +V   GW EG   G+ GWFP  YV 
Sbjct: 13 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           ++ F A+ + EL+L   D V++ +    GW  G   G+ G FP AYVE
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVE 60

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          F      ELS S  D + V +V   GW EG   G+ GWFP  YV 
Sbjct: 15 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59

>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound With A Synthetic Peptide Length = 70

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          ++P+ A+ +  L+ + +D + V +     W  GE +GQ GWFP +YV+
Sbjct: 18 LYPWRAKKDNHLNFNKNDVITVLEQQDMWWF-GEVQGQKGWFPKSYVK 64

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          F      ELS+   D + V +V   GW EG   G+ GWFP  YV 
Sbjct: 19 FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVR 63

>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain Length = 71

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          ++ F+ +  GEL     D + +       W EG   GQ+G+FP+ YVE
Sbjct: 17 LYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVE 64

>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin And Its Interaction With The Peptides From Vinculin Length = 65

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          F AQ+  EL+L   D V + +     W EGE  G+ G FP  YVE
Sbjct: 10 FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	2e-14
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	2e-14
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	4e-14
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	4e-14
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	2e-13
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	4e-13
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	4e-13
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	5e-13
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	7e-13
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	8e-13
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	1e-10
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	1e-12
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	1e-12
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	1e-12
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	2e-12
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-12
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	2e-12
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	2e-12
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	2e-12
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	3e-12
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	3e-12
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	3e-12
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	3e-12
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	4e-12
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	4e-12
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	4e-12
3u23_A	65	CD2-associated protein; structural genomics, struc	4e-12
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	5e-12
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	5e-12
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	6e-12
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	7e-12
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	7e-12
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	7e-12
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	7e-12
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	7e-12
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	8e-12
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	9e-12
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	1e-11
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	1e-11
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	1e-11
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	1e-11
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	1e-11
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	1e-11
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	1e-11
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	1e-11
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	2e-11
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	2e-11
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	2e-11
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	2e-11
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	2e-11
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	3e-11
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	3e-11
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	4e-11
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	4e-11
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	4e-11
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	5e-11
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	6e-11
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	6e-11
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	6e-11
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	7e-11
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	8e-11
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	8e-11
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	8e-11
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	8e-11
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	9e-11
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	9e-11
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	1e-10
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	1e-10
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	1e-10
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	1e-10
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	2e-10
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	2e-10
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-10
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	3e-10
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	3e-10
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	3e-10
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	4e-10
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	4e-10
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	4e-10
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	4e-10
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	5e-10
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	9e-10
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	9e-10
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	2e-09
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	2e-09
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	3e-09
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-09
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	4e-09
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	4e-09
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	4e-09
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	7e-06
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	5e-09
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	5e-09
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	6e-09
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	6e-09
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	7e-09
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	7e-09
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	7e-09
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	8e-09
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	8e-09
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	9e-09
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	1e-08
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	1e-08
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	1e-08
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	1e-08
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	1e-08
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	2e-08
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	2e-08
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	2e-08
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	2e-08
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	2e-08
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	3e-08
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	3e-08
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	3e-08
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	3e-08
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	4e-08
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	4e-08
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	4e-08
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	5e-08
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	5e-08
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	5e-08
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	6e-07
1wxb_A	68	Epidermal growth factor receptor pathway substrate	5e-08
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	5e-08
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	5e-06
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	5e-08
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	6e-08
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	7e-08
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	7e-08
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	9e-08
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	9e-08
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	1e-07
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	1e-07
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	2e-07
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	2e-07
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	7e-06
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	3e-07
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	3e-07
1awj_A	77	ITK; transferase, regulatory intramolecular comple	4e-07
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	4e-07
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	7e-07
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	7e-07
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	8e-07
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	8e-07
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	1e-06
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	1e-06
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	1e-06
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	1e-06
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	2e-06
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	2e-06
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	2e-06
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	2e-06
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	3e-06
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	3e-06
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	4e-06
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	5e-06
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	6e-06
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	6e-06
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	6e-06
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	9e-06
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	1e-05
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	1e-05
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-05
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	2e-05
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	2e-05
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	3e-05
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	4e-05
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	4e-05
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	4e-05
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	5e-05
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	6e-05
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	8e-05
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	8e-05
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	1e-04
1i07_A	60	Epidermal growth factor receptor kinase substrate	1e-04
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	2e-04
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	6e-04
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	6e-04
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	7e-04

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 60.9 bits (148), Expect = 2e-14
 Identities = 21/65 (32%), Positives = 27/65 (41%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
          V   + A+   ELSL     V+V +    GW  G   GQ GWFP  YV  +  +P     
Sbjct: 22 VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLGDHV 81

Query: 61 EGNSS 65
              S
Sbjct: 82 GSGPS 86

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 59.9 bits (146), Expect = 2e-14
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVER 50
           I  F  +   EL L +DD ++V   A   W E      G  G FP  Y   
Sbjct: 8  AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 59

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 59.6 bits (145), Expect = 4e-14
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVERQEKAP 55
           I  F  +   EL L +DD ++V   A   W E      G  G FP  Y     K P
Sbjct: 11 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKEP 67

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 59.6 bits (145), Expect = 4e-14
 Identities = 19/57 (33%), Positives = 27/57 (47%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
          V+  +  Q N ELSL   + V V +   +GW       + GW P  Y+E Q   P+S
Sbjct: 13 VVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGPSS 69

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 57.7 bits (140), Expect = 2e-13
 Identities = 20/62 (32%), Positives = 27/62 (43%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
              F      ELS+   D + V +V   GW EG   G+ GWFP  YV   + +  S  +
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSGPS 74

Query: 61 EG 62
           G
Sbjct: 75 SG 76

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 56.9 bits (138), Expect = 4e-13
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
           + P+ +Q+  E+       V V +    GW      G+ GW P +Y+++ + +  S
Sbjct: 13 TVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDSGPS 69

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 57.4 bits (139), Expect = 4e-13
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPT--GWSEGECKGQAGWFPLAYVERQEKAPAS 57
          V++ +DA  + ELSL  D+ + V  V      W  GE   Q G  P+ Y+E     P+S
Sbjct: 22 VLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSGPSS 80

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 57.1 bits (138), Expect = 5e-13
 Identities = 18/65 (27%), Positives = 27/65 (41%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
                A     L+L + D V V ++   G  EGE  G+ G FP  +V+  +     +  
Sbjct: 23 QKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPDENE 82

Query: 61 EGNSS 65
           G SS
Sbjct: 83 SGPSS 87

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 56.2 bits (136), Expect = 7e-13
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQA--NGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           I      A     L+L + D V V ++   G  EGE  G+ G FP  +V+
Sbjct: 6  AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 56

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 58.8 bits (142), Expect = 8e-13
 Identities = 17/67 (25%), Positives = 34/67 (50%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
           I  ++  +  E++LS  D V V + + +GW   + K + GW P +++E  +    ++  
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDP 75

Query: 61 EGNSSPE 67
          E N + E
Sbjct: 76 EPNYAGE 82

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 53.1 bits (127), Expect = 1e-10
 Identities = 13/66 (19%), Positives = 23/66 (34%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
            I  + A    E+SL   + V V      GW         G+FP  Y+++  +  +    
Sbjct: 86  AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQR 145

Query: 61  EGNSSP 66
           +     
Sbjct: 146 QIKRGA 151

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 55.3 bits (134), Expect = 1e-12
 Identities = 19/49 (38%), Positives = 22/49 (44%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
              F      ELS S  D + V +V   GW EG   G+ GWFP  YV 
Sbjct: 9  AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 55.6 bits (135), Expect = 1e-12
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ 51
          ++ F+ +   EL     D + +  ++ T W +G  KG+ G  P  YV  Q
Sbjct: 9  LYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 55.2 bits (134), Expect = 1e-12
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           I+ ++AQ + E+S+   D + V+     +GW+ GEC G  G FP +Y +
Sbjct: 5  AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 55.4 bits (134), Expect = 2e-12
 Identities = 13/61 (21%), Positives = 21/61 (34%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIAE 61
             +  +   ELS    D + + + A + W  GE  G  G  P  Y+          +  
Sbjct: 16 CFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQVVGA 75

Query: 62 G 62
          G
Sbjct: 76 G 76

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 55.5 bits (134), Expect = 2e-12
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKG-----QAGWFPLAYVERQEKAP 55
          V   + A  + +LSL+    +++ +   +GW +GE +      Q GWFP ++V+     P
Sbjct: 12 VTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK--LLGP 69

Query: 56 ASKIAEGNSS 65
          +S+ A G SS
Sbjct: 70 SSERASGPSS 79

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 54.5 bits (132), Expect = 2e-12
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK 53
          V   + AQ + EL++S+ + +   +    GW EG+  G+ G FP  +V   +K
Sbjct: 6  VEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKK 58

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 55.1 bits (133), Expect = 2e-12
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
           ++ + A  + E+S   DD +   ++   GW  G CKG+ G FP  YVE ++  P+S
Sbjct: 22 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS 78

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 54.9 bits (133), Expect = 2e-12
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          +   F AQ+  EL+L   D V + +     W EGE  G+ G FP  YVE
Sbjct: 6  LKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 54.6 bits (132), Expect = 3e-12
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
           ++ + AQ   EL LS  D + V      GW   E  GQ G+ P +Y+E+    P+S
Sbjct: 13 ALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLS-GPSS 68

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 54.5 bits (132), Expect = 3e-12
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          V+  +  Q   EL L + D + + +    GW  G    + G FP  +V+
Sbjct: 6  VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 54.5 bits (132), Expect = 3e-12
 Identities = 19/49 (38%), Positives = 22/49 (44%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
              F      ELS S  D + V +V   GW EG   G+ GWFP  YV 
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 54.6 bits (132), Expect = 3e-12
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIAE 61
          ++ F+ +  GEL     D + +       W EG   G +G+FP+ YVE     P S  + 
Sbjct: 13 LYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHSGPSS 72

Query: 62 G 62
          G
Sbjct: 73 G 73

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 54.2 bits (131), Expect = 4e-12
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQAN--GELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          VI      A     L+L + + V V ++  +G  EGEC G+ G FP  +V 
Sbjct: 11 VIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVR 61

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 54.1 bits (131), Expect = 4e-12
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           ++ +DAQ   EL+    D ++V Q  P GW EGE  G+ GW P  YV+
Sbjct: 8  ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 54.1 bits (131), Expect = 4e-12
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          V + +DA  + EL++ + + +  V ++   GW EGE  G+ G FP  +V+
Sbjct: 6  VEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVK 55

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 54.2 bits (131), Expect = 4e-12
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          V+  +  Q   EL L + D + + +    GW  G    + G FP  +V+
Sbjct: 12 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 60

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 53.7 bits (130), Expect = 5e-12
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          ++ FD Q +G+L L   D V + +     W +G C G+ G FP  YV+
Sbjct: 8  LYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 54.4 bits (131), Expect = 6e-12
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          V   +  Q + EL L + D + V      GW EG   G+ G FP  +++
Sbjct: 23 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 71

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 53.4 bits (129), Expect = 7e-12
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           ++ +DAQ   ELS + +D + + +  P+GW  G  +G+ G FP  YV 
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVT 58

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 53.8 bits (130), Expect = 7e-12
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           ++ F+ +  GEL     D + +       W EG   G++G+FP+ YVE
Sbjct: 8  GLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVE 56

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 53.7 bits (129), Expect = 7e-12
 Identities = 19/49 (38%), Positives = 22/49 (44%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          V   + A+   ELSL     V V +    GW  G   GQ GWFP  YV 
Sbjct: 6  VXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVL 54

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 53.8 bits (130), Expect = 7e-12
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52
           ++ + A  + E+S   DD +   ++   GW  G CKG+ G FP  YVE ++
Sbjct: 14 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 65

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 54.0 bits (130), Expect = 7e-12
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 1/69 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
              +    + E+S      V V +   +GW         GW P  Y+   E       +
Sbjct: 13 TCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQPDP-S 71

Query: 61 EGNSSPECG 69
             S P  G
Sbjct: 72 GKESGPSSG 80

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 53.6 bits (129), Expect = 8e-12
 Identities = 12/57 (21%), Positives = 17/57 (29%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
                      L L   D + +    P G   G    + G F   YV+     P+S
Sbjct: 16 TDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPSS 72

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 52.9 bits (128), Expect = 9e-12
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          +  F+ Q +GEL+    D + +       W EG+   + G FP  YV 
Sbjct: 8  LFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 56.9 bits (136), Expect = 1e-11
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
            +  F   +  EL+    D + +       W EG  +G  G FPL++V+  +  P  
Sbjct: 179 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEE 235

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 53.5 bits (129), Expect = 1e-11
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER--QEKAPASK 58
           ++ F A+ + EL+L   D V++ +    GW  G   G+ G FP AYVE         + 
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNTAT 71

Query: 59 IAEGNSS 65
           A G SS
Sbjct: 72 KASGPSS 78

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 53.1 bits (128), Expect = 1e-11
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER-QEKAPASKIA 60
          +  F+   + EL    +D + +          GE  G  GWFP  +VE   E++    IA
Sbjct: 13 LLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIA 72

Query: 61 EGNSS 65
           G SS
Sbjct: 73 SGPSS 77

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 53.0 bits (128), Expect = 1e-11
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          +  +  +  G+L  +  D +++ +     W +GE  G +G FP + VE
Sbjct: 13 LCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVE 60

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 52.6 bits (127), Expect = 1e-11
 Identities = 11/52 (21%), Positives = 27/52 (51%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52
          V++ +  ++  EL++   D + +       W + E  G+ G+ P AY+++ +
Sbjct: 11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKLD 62

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 52.6 bits (127), Expect = 1e-11
 Identities = 18/48 (37%), Positives = 24/48 (50%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          +  FD Q +GEL     D++ V   +   W +G C GQ G FP  YV 
Sbjct: 8  LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 55

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 53.1 bits (128), Expect = 1e-11
 Identities = 14/57 (24%), Positives = 22/57 (38%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
              +  +   ELS      +++ Q A   W EG   G  G  P  Y+  Q+ +  S
Sbjct: 14 AKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSGPS 70

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 53.0 bits (128), Expect = 1e-11
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          V   +  Q + EL L + D + V      GW EG   G+ G FP  +++
Sbjct: 12 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 60

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 53.1 bits (128), Expect = 2e-11
 Identities = 16/49 (32%), Positives = 20/49 (40%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           I+ +      ELS      + V +    GW EG   G  G FP  YVE
Sbjct: 22 AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 70

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 52.6 bits (127), Expect = 2e-11
 Identities = 18/49 (36%), Positives = 22/49 (44%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
              F AQ   EL L   D V + +     W EGE  G+ G FP  Y+E
Sbjct: 12 AKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 52.6 bits (127), Expect = 2e-11
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          +  ++A    +L     D ++V       W EGE KG+ G FP  +VE
Sbjct: 11 LFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 52.6 bits (127), Expect = 2e-11
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP 55
          ++ F+ + +GEL     D + +       W EG   GQ+G+FPL+YV+     P
Sbjct: 19 LYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVPLP 72

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 52.2 bits (126), Expect = 2e-11
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
             +  ++  ELS      +++   A   W EG   G  G  P  Y+ 
Sbjct: 12 KFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 52.9 bits (127), Expect = 3e-11
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 1  VIHPFDAQANGELSLSIDD--YVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASK 58
           ++PF+A+ + E+S +  D   V    V   GW  G  +G  GWFP  YVE+   +   K
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENEK 69

Query: 59 IAEGNSSP 66
                + 
Sbjct: 70 AVSPKKAL 77

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 52.3 bits (126), Expect = 3e-11
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          +  F   +  EL+    D + +       W EG  +G  G FPL++V+
Sbjct: 24 LFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 71

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 51.8 bits (125), Expect = 4e-11
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          ++ F+A    EL     + V V   +   W  G    + G FP  YV 
Sbjct: 7  LYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 51.4 bits (124), Expect = 4e-11
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          +  F   +  EL+    D + +       W EG  +G  G FPL++V+
Sbjct: 10 LFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 51.9 bits (125), Expect = 4e-11
 Identities = 10/57 (17%), Positives = 28/57 (49%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASK 58
          ++ +  ++  E+++   D + +       W + E   + G+ P AYV++ + A ++ 
Sbjct: 11 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSAS 67

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 51.4 bits (124), Expect = 5e-11
 Identities = 13/50 (26%), Positives = 20/50 (40%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
          V+  F  +   EL +   + V V +     W+     GQ G  P  Y+E 
Sbjct: 12 VLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEP 61

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 51.1 bits (123), Expect = 6e-11
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDD--YVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           + P+      EL+    +  +++  +    GW +GE  G+ G FP  +  
Sbjct: 11 TLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAV 61

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 52.1 bits (125), Expect = 6e-11
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 1  VIHPFDAQANGELSLSIDDYVVV----CQVAPTGWSEGECK--GQAGWFPLAYVERQEKA 54
          VI+P+  Q + EL L   D++ +          GW  G     G +G  P  Y+ + ++ 
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADEC 80

Query: 55 PASKIAEGNSSPECG 69
              I  G+S P  G
Sbjct: 81 STW-IFHGSSGPSSG 94

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 51.1 bits (123), Expect = 6e-11
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 1  VIHPFDAQANGELSLSIDD--YVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP 55
          VI P++AQ + EL++   D   ++       GW EGE  G+ G FP  +V+      
Sbjct: 7  VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLE 63

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 51.2 bits (123), Expect = 7e-11
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDD--YVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          VI P++AQ + EL++   D   ++       GW EGE  G+ G FP  +V+
Sbjct: 14 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 51.7 bits (124), Expect = 8e-11
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE-RQEKAPASKI 59
           ++ F+A  + EL+    + ++V   +   W +GE     G FP  +V         +  
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEAAA 81

Query: 60 AEGNSS 65
            G SS
Sbjct: 82 VSGPSS 87

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 51.6 bits (124), Expect = 8e-11
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
          ++ + A    ELS S    + V       W +GE  G  G FP  YV+    +   
Sbjct: 40 MYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSSGP 95

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 51.2 bits (123), Expect = 8e-11
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE-RQEKAPASKIA 60
          +      AN EL+    D + V   +   W  G+   + GWFP ++V     +    +  
Sbjct: 16 VWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEVEEG 75

Query: 61 EGNSS 65
           G SS
Sbjct: 76 SGPSS 80

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 51.2 bits (123), Expect = 8e-11
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           +  ++      L    +D + +  +     W  G+  G+ G FP+ +VE
Sbjct: 15 ALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 50.7 bits (122), Expect = 9e-11
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
          ++ F+ +   EL     D + +  ++ T W +G  KG+ G  P  YV  Q   P+S
Sbjct: 13 LYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS-GPSS 67

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 50.7 bits (122), Expect = 9e-11
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
          ++P+ +   G+L+ +  + ++V Q     W  G    ++G FP  YV+ ++  P+S
Sbjct: 14 LYPYSSVEPGDLTFTEGEEILVTQKDG-EWWTGSIGDRSGIFPSNYVKPKDSGPSS 68

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 51.2 bits (123), Expect = 1e-10
 Identities = 10/56 (17%), Positives = 26/56 (46%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
          ++ +  ++  E+++   D + +       W + E   + G+ P AYV++   A + 
Sbjct: 23 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAAWSH 78

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 50.3 bits (121), Expect = 1e-10
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52
          ++ F+A  + EL+    + + V   +   W +GE     G FP  +V    
Sbjct: 11 LYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTDL 61

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 50.8 bits (122), Expect = 1e-10
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          I+ F+A  + EL+    + + V   +   W +GE     G FP  +V 
Sbjct: 23 IYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVT 70

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 50.3 bits (121), Expect = 1e-10
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
          ++ F  Q N +L +   D + + + +   W +G+ + + G+FP  +V+R    P+S
Sbjct: 13 LYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLS-GPSS 67

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 49.5 bits (119), Expect = 2e-10
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 1  VIHPFDAQAN-GELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVE 49
            + F    +  EL L   D + + +  P+GWS G+     + GW P AY++
Sbjct: 5  AAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 50.0 bits (120), Expect = 2e-10
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDD--YVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          VI P++AQ + EL++   D   ++       GW EGE  G+ G FP  +V+
Sbjct: 12 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 62

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 50.0 bits (120), Expect = 2e-10
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPT---GWSEGECKGQAGWFPLAYVERQEKAPAS 57
          ++ ++ Q + ELS      + +         G+ EGE  G+ G FP   VE     P+S
Sbjct: 14 LYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGPSS 72

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 50.0 bits (120), Expect = 3e-10
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 2  IHPFDAQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          ++   A+ + ELS +       V      GW EG   G+ G  P  YVE
Sbjct: 16 LYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 49.6 bits (119), Expect = 3e-10
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVER 50
           ++ +  Q   EL L   D V V Q    GW  G  +   + G FP  YV  
Sbjct: 12 AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 49.7 bits (119), Expect = 3e-10
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 2  IHPFDAQANGELSLSIDD--YVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          +  +       LS    D   ++       GW  G   G++G FP   V+
Sbjct: 14 LRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQ 63

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 49.6 bits (119), Expect = 4e-10
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPT--GWSEGECKGQAGWFPLAYVE 49
            + F A+   ELSL   D V +        GW +GE  G+ GWFP  YVE
Sbjct: 12 ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 49.7 bits (119), Expect = 4e-10
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVE 49
          +   F A+   E++L   D V+V Q    GW  GE    G+ GWFP  +  
Sbjct: 22 ITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDGETGWFPEDFAR 71

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 49.3 bits (118), Expect = 4e-10
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPT----GWSEGECKGQAGWFPLAYVERQEKAPA 56
           ++ F A+   ELS+S +  + + +         W   E  G+ G+ P  Y+ + E  P+
Sbjct: 18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPS 77

Query: 57 S 57
          S
Sbjct: 78 S 78

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 50.8 bits (121), Expect = 4e-10
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKI 59
            + F A+   ELSL   D + ++ +    GW  GE  G+ GWFP  YVE        + 
Sbjct: 10 ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYLPET 69

Query: 60 AEGNSSPECGATS 72
            G+ S       
Sbjct: 70 GGGSGSSMTYKLI 82

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 49.2 bits (118), Expect = 5e-10
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAG-WFPLAYVE 49
           +  + AQ   EL+      +   +    GW  G+  G+   WFP  YVE
Sbjct: 11 ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVE 60

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 48.4 bits (116), Expect = 9e-10
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52
          I  + A    +LS    + +++ +     W  GE  G  G+ P  +V +  
Sbjct: 13 IADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS 63

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 48.4 bits (116), Expect = 9e-10
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 2  IHPFDAQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52
           + F A A+ ELS    D + V+ +     W + E  G+ G+ P  Y+E + 
Sbjct: 15 KYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP 66

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 47.6 bits (114), Expect = 2e-09
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQEKAPA 56
           +H + A    EL L   + + V      GW +G     G+ G FP  YV       +
Sbjct: 12 ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGPSS 69

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 47.2 bits (113), Expect = 2e-09
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 2  IHPFDAQANGELSLSIDDYV-VVCQVAPT-GWSEGECKGQAGWFPLAYVE 49
          ++ F  + +G+L     D + ++ +      W  G   G+ G FP  YVE
Sbjct: 9  LYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 46.9 bits (112), Expect = 3e-09
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 1  VIHPFDAQAN-GELSLSIDDYV-VVCQVAPTGWSEGECK--GQAGWFPLAYVE 49
           I P  A +N   LS +  D + ++      GW  GE       GWFP +Y +
Sbjct: 11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 46.9 bits (112), Expect = 4e-09
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE---RQEKAPAS 57
          +  + A+ +  L+ S  D + V +     W  GE  G  GWFP +YV+     E  P+S
Sbjct: 16 LCSWTAKKDNHLNFSKHDIITVLEQQE-NWWFGEVHGGRGWFPKSYVKIIPGSESGPSS 73

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 46.4 bits (111), Expect = 4e-09
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAG-WFPLAYVE 49
           +  + AQ   EL+ +    +   +    GW  G+  G+   WFP  YVE
Sbjct: 8  ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 57

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 46.4 bits (111), Expect = 4e-09
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQE 52
           ++ F+ + + EL L+  D V +      GW   E     + G  P  +V   +
Sbjct: 6  ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 59

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 49.6 bits (117), Expect = 4e-09
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASK 58
                +A     L+L + + V V ++  +G  EGEC G+ G FP  +V   ++    +
Sbjct: 244 QKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNPEE 301

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 40.7 bits (94), Expect = 7e-06
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 2   IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEKAPASKIA 60
           +  F+     +L     D + +       W   E  +G+ G  P+ YVE+   A AS  A
Sbjct: 140 LFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSA 199

Query: 61  EGNSSPE 67
               + E
Sbjct: 200 LIGGNQE 206

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 46.4 bits (111), Expect = 5e-09
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVE 49
          ++ + AQ   E+S    DY+V  Q    GW  G  +  G+ G  P  Y+E
Sbjct: 12 MYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 46.5 bits (111), Expect = 5e-09
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQ---VAPTGWSEGECKGQAGWFPLAYVE 49
          ++   A++  ELS    D + V +       GW      G+ G  P   ++
Sbjct: 9  LYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLK 59

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 46.2 bits (110), Expect = 6e-09
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 7  AQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVERQ 51
           Q  G L+L   D V V   +   G+  GE  G  G  P   ++  
Sbjct: 25 GQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHM 70

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 46.6 bits (111), Expect = 6e-09
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQV--APTGWSEGECKGQAGWFPLAYVE 49
          ++ F+ Q  G+L+    D + V     +   W EG+ +GQ G FP  YV 
Sbjct: 23 LYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVT 72

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 46.1 bits (110), Expect = 7e-09
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQA-GWFPLAYVE 49
          ++ + A+ + EL+      +      P GW +G+   +   +FP  YVE
Sbjct: 13 LYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVE 61

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 48.2 bits (114), Expect = 7e-09
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC---KGQAGWFPLAYVERQEKAPAS 57
           I+ F      +LSL I D V + +     W  G     K   G FP +++  +E     
Sbjct: 22 AIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSFIHIKEVTVEK 80

Query: 58 KIAEGNSSP 66
          +    N  P
Sbjct: 81 RRNTENIIP 89

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 46.2 bits (110), Expect = 7e-09
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 1  VIHPFDAQANG-ELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVE 49
            + F    +  EL L   D V + +  P+GWS  +     + GW P AY+ 
Sbjct: 7  AAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMT 58

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 46.4 bits (110), Expect = 8e-09
 Identities = 10/61 (16%), Positives = 24/61 (39%)

Query: 7  AQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIAEGNSSP 66
          A    E+++   D + +       W + E   + G+ P AYV++ +     ++       
Sbjct: 2  AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDY 61

Query: 67 E 67
          +
Sbjct: 62 Q 62

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 45.6 bits (109), Expect = 8e-09
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTG-WSEGECKGQAGWFPLAYVERQE 52
           ++ F A  +  LS++  + + V      G W E + K   GW P AY+    
Sbjct: 10 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 45.7 bits (109), Expect = 9e-09
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 1  VIHPFDAQANGELSLSIDDYVVV---CQVAPTGWSEGECKGQAGWFPLAYVE 49
           ++      + EL+ S  D + +         GW +    G+ G  P   ++
Sbjct: 12 ALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQ 63

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 45.3 bits (108), Expect = 1e-08
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVE 49
          +DA  + EL+   +D ++  +     W  GE +  G  G FP  YV 
Sbjct: 9  YDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 45.2 bits (108), Expect = 1e-08
 Identities = 9/52 (17%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVC-QVAPTGWSE--GECKGQAGWFPLAYVE 49
          V++ +  + + E++++  D + +  +   +GW++   +  G+ G  P  Y+ 
Sbjct: 6  VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 45.4 bits (108), Expect = 1e-08
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 1  VIHPFDAQAN-GELSLSIDDYV-VVCQVAPTGWSEGECK--GQAGWFPLAYVE 49
           I P  A  N   LS +  D + ++      GW  GE       GWFP +Y +
Sbjct: 12 TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 46.9 bits (111), Expect = 1e-08
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC---KGQAGWFPLAYVERQEKAPAS 57
           ++ F A+ + EL +S  + + +C      W   +     G  G  P++YV   +    +
Sbjct: 8  TLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMDPA 67

Query: 58 KIAEGNSSPE 67
          K A  ++   
Sbjct: 68 KYASVDTYDR 77

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 46.6 bits (110), Expect = 1e-08
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC---KGQAGWFPLAYVERQE 52
            I+ F      +LSL I D V + +     W  G     K   G FP +++  +E
Sbjct: 64  AIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE 117

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 44.9 bits (107), Expect = 2e-08
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 2  IHPFDAQANGELSLSIDDYVVVC-QVAPTGWSEGECK-GQAGWFPLAYVE 49
          ++ +D Q   ELS    D +    +    GW  G    GQ G +P  YVE
Sbjct: 9  LYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 48.0 bits (114), Expect = 2e-08
 Identities = 13/70 (18%), Positives = 21/70 (30%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
            +       + EL     D + V       W  G      GWFP ++V  +         
Sbjct: 35  ALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADD 94

Query: 61  EGNSSPECGA 70
           +   +   GA
Sbjct: 95  DAPLAGNSGA 104

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 47.9 bits (113), Expect = 2e-08
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVERQEKA 54
            I+    +   E+ +   D + V      G+S+G  +  G+ G +P   V  + + 
Sbjct: 447 AIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIET 502

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 45.0 bits (107), Expect = 2e-08
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEG-ECKGQAGWFPLAYVERQEK 53
           +  F AQ  G+L+    + ++V +  P GW    + KG  G  P  Y+E   +
Sbjct: 15 AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 45.0 bits (107), Expect = 2e-08
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQA---GWFPLAYVER-QEKAPA 56
           I+   A  + EL+    + ++V       W  G  +GQ    G FP+++V    +  P+
Sbjct: 15 TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDSGPS 74

Query: 57 S 57
          S
Sbjct: 75 S 75

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 44.6 bits (106), Expect = 3e-08
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC-KGQAGWFPLAYVERQE 52
          ++ + A  + EL++   D + V       W  G   KGQ G+FP  +V  + 
Sbjct: 12 LYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET 63

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 44.6 bits (106), Expect = 3e-08
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVE 49
           ++ F+ + + EL L+  D V +      GW   E +   + G  P  +V 
Sbjct: 10 ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 44.3 bits (105), Expect = 3e-08
 Identities = 9/51 (17%), Positives = 22/51 (43%)

Query: 11 GELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIAE 61
           E+++   D + +       W + E   + G+ P AYV++ +     ++  
Sbjct: 4  REVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVL 54

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 44.2 bits (105), Expect = 3e-08
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 2  IHPFDAQAN-GELSLSIDDYVVVC-QVAPTGWSEGECK--GQAGWFPLAYVERQE 52
          I    A  N   LS    D + +    A  GW  GE +     GWFP +Y    +
Sbjct: 13 IFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVLD 67

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 45.2 bits (107), Expect = 4e-08
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC---KGQAGWFPLAYVERQEKAPAS 57
          V++ F A+   EL+  + + + +C      W   +     G  G  P+ +V   +   A+
Sbjct: 10 VLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIID--IAT 67

Query: 58 KIAEGNSSPE 67
            A GN   E
Sbjct: 68 GYATGNDVIE 77

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 44.1 bits (105), Expect = 4e-08
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQE 52
          +  F+     +L     D + +       W   E  +G+ G  P+ YVE+  
Sbjct: 9  LFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYH 60

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 44.1 bits (105), Expect = 4e-08
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKG--QAGWFPLAYVE 49
             F+     E+S    + + + +     W EG   G  + G FP+ YV+
Sbjct: 13 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 43.7 bits (104), Expect = 5e-08
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVER 50
          +  F+     +L     D + +       W   E  +G+ G  P+ YVE+
Sbjct: 7  LFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 44.3 bits (105), Expect = 5e-08
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIAE 61
          + P+ A    E+++   D + +       W + E   + G+ P AYV++ +     ++  
Sbjct: 6  LPPYSAG-GREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVL 64

Query: 62 G 62
           
Sbjct: 65 A 65

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 46.7 bits (110), Expect = 5e-08
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC-KGQAGWFPLAYVERQEKAPASKI 59
               F  +   +L     + + +       W E     G  G  P  YV+ Q +    + 
Sbjct: 152 GTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHNDRT 211

Query: 60  AEGNSSPECG 69
           ++G S    G
Sbjct: 212 SKGASQSSIG 221

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 43.7 bits (102), Expect = 6e-07
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 12  ELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           +L +     V+V Q    G  + E  GQ G  P  Y+ 
Sbjct: 265 QLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLR 302

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 43.8 bits (104), Expect = 5e-08
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
          +++ F A+   ELS+  D+ + V +     W      GQAG+ P   +      P+S
Sbjct: 12 ILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGE-ASGPSS 67

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 46.5 bits (109), Expect = 5e-08
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 5   FDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASK 58
             A     L+L + D V V ++   G  EGE  G+ G FP  +V+  +     +
Sbjct: 248 PCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPDE 301

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 41.2 bits (95), Expect = 5e-06
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 3   HPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-GQAGWFPLAYVERQEKAPASKIAE 61
           + F      +L     + +V+ +     W     K G+ G  P+ YVE+  ++       
Sbjct: 132 YDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHG 191

Query: 62  GNSSPE 67
             +S  
Sbjct: 192 NRNSNS 197

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 44.0 bits (104), Expect = 5e-08
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGW----SEGECKGQAGWFPLAYVERQEKAPA 56
           I  ++              + V +  P GW         K   GW P  Y+E++   P+
Sbjct: 15 SIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSGPS 73

Query: 57 S 57
          S
Sbjct: 74 S 74

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 43.9 bits (104), Expect = 6e-08
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 1  VIHPFDAQ-------ANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           ++ +D +          EL+    D + V  ++   G+  GE  GQ G  P  ++E
Sbjct: 12 ALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLE 68

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 46.3 bits (108), Expect = 7e-08
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVC-QVAPTGWSEGECK-GQAGWFPLAYVERQE 52
            ++ ++ Q + ELS    D +         GW +G    GQ G +P  YVE  +
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAIQ 486

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 44.0 bits (104), Expect = 7e-08
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 5  FDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVERQEKAPASKIAEG 62
          F      ELS    +++ + +     W EG     G+ G FP +YV+   +       + 
Sbjct: 26 FKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLRLCDD- 84

Query: 63 NSSPECG 69
           S P  G
Sbjct: 85 -SGPSSG 90

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 43.4 bits (103), Expect = 9e-08
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKG--QAGWFPLAYVE 49
             F+     E+S    + + + +     W EG   G  + G FP+ YV+
Sbjct: 12 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 43.5 bits (103), Expect = 9e-08
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 1  VIHPFDAQAN-GELSLSIDDYVVVCQVAPT-GWSEGE-CKGQAGWFPLAYVERQEKAPAS 57
          V++ F A+    EL+++  + + V       GW EG+  KG+ G  P  YVE        
Sbjct: 14 VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGKD 73

Query: 58 KIA 60
            +
Sbjct: 74 PFS 76

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 43.5 bits (103), Expect = 1e-07
 Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQEKAPASKI 59
          ++ ++A+   +LS    +   +   +   W E      G+ G+ P  Y+   ++      
Sbjct: 11 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLDYKDD 70

Query: 60 AEGNS 64
           + + 
Sbjct: 71 DDKHH 75

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 43.4 bits (102), Expect = 1e-07
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 17/75 (22%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPT---------------GWSEG--ECKGQAGWF 43
           ++PF  +   +L L   D +VV + A                 GW  G  E   Q G F
Sbjct: 16 ALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDF 75

Query: 44 PLAYVERQEKAPASK 58
          P  YVE       ++
Sbjct: 76 PGTYVEFLGPVALAR 90

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 42.3 bits (100), Expect = 2e-07
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPT--GWSEGE-CKGQAGWFPLAYVERQEKAPAS 57
           ++PF +    EL+    + + V +       W + +  +GQ G  P  YV      PA 
Sbjct: 11 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPAL 70

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 44.7 bits (105), Expect = 2e-07
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 1  VIHPFDAQANGELSLSIDD-YVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASK 58
            + F A A+ ELS    D   V+ +     W + E  G+ G+ P  Y+E +       
Sbjct: 5  AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFG 63

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 40.4 bits (94), Expect = 7e-06
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 3   HPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK 53
             FD Q +GEL     D++ V   +   W +G C GQ G FP  YV    +
Sbjct: 165 FDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 215

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 42.5 bits (100), Expect = 3e-07
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 7/73 (9%)

Query: 2  IHPFDAQANGELSLSIDDYVVVC----QVAPTGWSEGECKGQA-GWFPLAYVERQEKAPA 56
           + F A ++ E+S    D + +     Q    GW      GQ  G  P  YV+       
Sbjct: 23 EYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVK--ILGKR 80

Query: 57 SKIAEGNSSPECG 69
                 S P  G
Sbjct: 81 RGRKTIESGPSSG 93

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 42.6 bits (100), Expect = 3e-07
 Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 1/64 (1%)

Query: 4  PFDAQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIAEG 62
          P    A  EL       + V       G+  GE   + G  P   V   +      + + 
Sbjct: 33 PNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQADDEEMMDQS 92

Query: 63 NSSP 66
            S 
Sbjct: 93 GPSS 96

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 42.0 bits (99), Expect = 4e-07
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-GQAGWFPLAYVERQ 51
           ++ +      EL+L  D+   +   +   W   + K G  G+ P +Y+  +
Sbjct: 25 ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEK 76

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 42.0 bits (99), Expect = 4e-07
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQEKAPASK 58
          ++ ++A    +LS    +   + +  P  W E      G+ G+ P  YV   +     +
Sbjct: 12 LYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQGEQ 70

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 41.2 bits (97), Expect = 7e-07
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYV-VVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEKAPAS 57
          V++ + A    EL++   + + V+       W +     GQ G+ P  Y++    +  S
Sbjct: 18 VVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSSGPS 76

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 41.3 bits (97), Expect = 7e-07
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPT--GWSEGE-CKGQAGWFPLAYVERQEKAPAS 57
           ++PF +    EL+    + + V +       W + +  +GQ G  P  YV      PA 
Sbjct: 22 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPAL 81

Query: 58 KIAEGNSS 65
            A    S
Sbjct: 82 HPAHSGPS 89

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 40.8 bits (96), Expect = 8e-07
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKG-----QAGWFPLAYVE 49
            P+ +    +L+   D  ++V  V    W  GE +        G FP ++V 
Sbjct: 13 QFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 40.7 bits (96), Expect = 8e-07
 Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 3/52 (5%)

Query: 1  VIHPFDAQANG-ELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVE 49
           I P+    +  E+S    D  +V      GW         + G      VE
Sbjct: 12 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 63

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 41.0 bits (96), Expect = 1e-06
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPT-----GWSEGECK-GQAGWFPLAYVE 49
           +  ++A  + EL+L   D V V           GW  G+   G+ G FP  YV 
Sbjct: 34 AVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 40.3 bits (95), Expect = 1e-06
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
          V++ F+A+   EL++   + + V   +   W      G++G+ P   +E
Sbjct: 12 VLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILE 60

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 40.4 bits (95), Expect = 1e-06
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 2  IHPFDAQAN--GELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASK 58
          ++P+DA  +   E+S   ++ + V  +    W      G+ G  P  YV+  +      
Sbjct: 11 LYPYDADDDDAYEISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYVQLIDGPEEMH 69

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 40.4 bits (95), Expect = 1e-06
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQE 52
          ++ ++A    +LS    +   +   +   W E      G+ G+ P  YV   +
Sbjct: 21 LYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 41.2 bits (96), Expect = 2e-06
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 15/65 (23%)

Query: 1   VIHPFDAQANGELSLSIDDYVVVCQVAPT-----GWSEG----------ECKGQAGWFPL 45
             H + A    EL L   D V+V           GW  G          E +   G FP 
Sbjct: 49  AQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPE 108

Query: 46  AYVER 50
            + ER
Sbjct: 109 NFTER 113

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 40.7 bits (95), Expect = 2e-06
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 6  DAQANGELSLSIDDYVVVC-QVAPTGWSEGE-CKGQAGWFPLAYVERQEKAPASKIAEGN 63
          +     EL L+   Y+ V   +   G+ EGE   GQ G  P  +V+  +   +   +   
Sbjct: 33 NENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNESRLASTSG 92

Query: 64 SS 65
           S
Sbjct: 93 PS 94

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 39.9 bits (94), Expect = 2e-06
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-GQAGWFPLAYVERQEKA 54
          ++ +      +L L   D   + + +   W     K GQ G+ P  YV   E +
Sbjct: 14 LYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAEDS 67

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 39.7 bits (93), Expect = 2e-06
 Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 3/52 (5%)

Query: 1  VIHPFDAQANG-ELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVE 49
           I P+    +  E+S    D  +V      GW         + G      VE
Sbjct: 10 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 39.8 bits (93), Expect = 3e-06
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 2  IHPFDAQAN-GELSLSIDDYVVVCQVAPTGWSEGECKG------QAGWFPLAYVE 49
          +  F    +   L++   D + V +  P G  +G          + G+FP   VE
Sbjct: 24 LKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVE 78

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 39.6 bits (93), Expect = 3e-06
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 1  VIHPFDAQANGELSLSIDDYV-VVCQVAPTGWSEGECK--GQAGWFPLAYVERQEKAPAS 57
          V + F A++  EL++   D V ++       W   +    G++G  P  ++E       +
Sbjct: 11 VQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKKHT 70

Query: 58 K 58
          +
Sbjct: 71 E 71

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 39.3 bits (92), Expect = 4e-06
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC-----KGQAGWFPLAYVERQE 52
          +  F ++ + ELS    D   V +     W              G+ P  Y+  +E
Sbjct: 16 LWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE 71

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 38.8 bits (91), Expect = 5e-06
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 2  IHPFDAQANGELSLSIDD-YVVVCQVAPTGWSEGECK-GQAGWFPLAYVERQE 52
           + F   A  +L     D   +V       W + + K G+ G  P  YV+++E
Sbjct: 17 KYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 40.5 bits (94), Expect = 6e-06
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 2   IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQ 51
              F  +   +L     + + +       W E     G  G  P  YV+ Q
Sbjct: 124 TFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ 174

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 39.0 bits (91), Expect = 6e-06
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 1  VIHPFDAQ-ANGELSLSIDDYVVV-----CQVAPTGWSEGECK-GQAGWFPLAYVERQEK 53
           ++ F  +    E++L   D + +          + W +   K G  G+ P  Y+E  ++
Sbjct: 19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR 78

Query: 54 APASKIAEGNSSPE 67
              +  +  +   
Sbjct: 79 RKKIEHVDDETRTH 92

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 38.5 bits (90), Expect = 6e-06
 Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGW--------SEGECKGQAGWFPLAYVERQE 52
          ++ +  ++  E+++   D + +       W          G+   + G+ P AYV++ +
Sbjct: 7  LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD 65

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 37.9 bits (89), Expect = 9e-06
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 1  VIHPFDAQANGELSLSIDDYV-VVCQVAPTGWSEGECK--GQAGWFPLAYVE 49
          V + F A++  EL++   D V ++       W   +    G++G  P  ++E
Sbjct: 7  VQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 38.0 bits (89), Expect = 1e-05
 Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPT-GWSEGE-CKGQAGWFPLAYVERQEKAPA 56
           I+ F+  + G +S++  + + + +     GW+     +G  G+ P +Y+       +
Sbjct: 12 AIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSGPSS 69

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 39.9 bits (92), Expect = 1e-05
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 3   HPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEKAPAS 57
             F+     +L     D + +       W   E  +G+ G  P+ YVE+   A AS
Sbjct: 143 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASAS 198

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 37.2 bits (87), Expect = 2e-05
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-GQAGWFPLAYVERQE 52
          ++ F A    +L L      ++ +     W     K G  G+ P  YV  ++
Sbjct: 8  MYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 37.9 bits (88), Expect = 2e-05
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ 51
              + AQ + EL +  ++ + +   + T W       + G+ P  YVER+
Sbjct: 36 AKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERK 86

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 37.4 bits (87), Expect = 2e-05
 Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 3/58 (5%)

Query: 2  IHPFDAQANGELSLSIDD-YVVVCQVAPTGWSEGECK--GQAGWFPLAYVERQEKAPA 56
                   GEL+    D   ++       W   +    GQ G      +  +    +
Sbjct: 23 KCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSGPSS 80

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 37.4 bits (87), Expect = 3e-05
 Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-GQAGWFPLAYVERQE 52
          ++ +      EL+L  ++   +   +   W   + + G  G+ P +Y+  + 
Sbjct: 25 LYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS 76

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 36.6 bits (85), Expect = 4e-05
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 1  VIHPFDAQ-ANGELSLSIDDYVVV-----CQVAPTGWSEGECK-GQAGWFPLAYVE 49
           ++ F  +    E++L   D + +          + W +   K G  G+ P  Y+E
Sbjct: 12 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 67

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 37.0 bits (86), Expect = 4e-05
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 1  VIHPFDAQ-ANGELSLSIDDYVVV-----CQVAPTGWSEGECK-GQAGWFPLAYVE 49
           ++ F  +    E++L   D + +          + W +   K G  G+ P  Y+E
Sbjct: 19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 74

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 36.6 bits (85), Expect = 4e-05
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 9/60 (15%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGW---------SEGECKGQAGWFPLAYVERQE 52
          +  + A+   +LS    D + V   +  GW           G  +   G+ P  YV    
Sbjct: 13 LFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDS 72

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 38.2 bits (89), Expect = 5e-05
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP 55
          ++ + AQ + EL+ S    + V       W +GE  GQ G FP  YV+      
Sbjct: 8  MYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMD 61

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 36.6 bits (84), Expect = 6e-05
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 17/73 (23%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPT---------------GWSEG--ECKGQAGWFP 44
          ++ +  +   ++ L + D + V + +                 GW  G  E  G+ G FP
Sbjct: 11 LYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFP 70

Query: 45 LAYVERQEKAPAS 57
            YVE   +   S
Sbjct: 71 GTYVEYIGRKKIS 83

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 36.7 bits (85), Expect = 8e-05
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQE 52
          ++ ++A+   +LS    +   +       W E      G++G+ P  YV   +
Sbjct: 33 LYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPAD 85

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 35.7 bits (82), Expect = 1e-04
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 4  PFDAQANGELSLSIDDYVVVCQV-APTGWSEG--ECKGQAGWFPLAYVE 49
          P      G L L+  D V + +  A   W EG      + GWFP   V 
Sbjct: 26 PPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 74

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 34.9 bits (81), Expect = 1e-04
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
            + F A+ + ELS+  DD + +       W      G +G+ P   ++
Sbjct: 6  SKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILD 54

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 34.9 bits (81), Expect = 2e-04
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-GQAGWFPLAYVERQE 52
              + AQ + EL +  ++ + +   +   W        + G+ P  YVER+ 
Sbjct: 9  AKWDYTAQQDQELDIKKNERLWLLDDSK-TWWRVRNAANRTGYVPSNYVERKL 60

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 34.0 bits (78), Expect = 6e-04
 Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 1/53 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGW-SEGECKGQAGWFPLAYVERQE 52
          V+  + +           + + V       W +     G+  + P   V R  
Sbjct: 22 VLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVS 74

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 33.4 bits (77), Expect = 6e-04
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
            + F A+ + ELS+   D + V   +   W   +  GQ G+ P   + 
Sbjct: 13 CNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYNILT 61

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 33.8 bits (77), Expect = 7e-04
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQ----VAPTGWSEGECKGQAGWFPLAYVERQEKAPA 56
              F+A  + ++SL   D V V +    +        +     G+   ++++      +
Sbjct: 22 AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRS 81

Query: 57 SKIAEGNSS 65
             A    S
Sbjct: 82 HSDASSGPS 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.74
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.74
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.72
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.72
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.71
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.71
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.71
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.71
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.71
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.71
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.71
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.71
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.7
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.7
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.7
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.7
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.7
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.7
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.7
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.7
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.7
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.7
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.7
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.7
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.7
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.7
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.7
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.69
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.69
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.69
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.69
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.69
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.69
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.69
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.69
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.69
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.69
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.69
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.68
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.68
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.68
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.68
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.68
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.68
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.68
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.68
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.68
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.68
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.68
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.68
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.68
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.67
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.67
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.67
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.67
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.67
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.67
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.67
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.67
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.67
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.67
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.67
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.67
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.67
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.67
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.66
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.66
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.66
3u23_A	65	CD2-associated protein; structural genomics, struc	99.66
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.66
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.66
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.66
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.66
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.66
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.66
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.66
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.66
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.66
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.66
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.66
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.66
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.65
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.65
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.65
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.65
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.65
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.65
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.65
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.65
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.65
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.65
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.65
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.65
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.65
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.65
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.65
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.65
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.65
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.64
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.64
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.64
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.64
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.64
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.64
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.64
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.64
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.64
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.64
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.63
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.63
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.63
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.63
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.63
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.63
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.63
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.63
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.63
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.63
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.63
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.62
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.62
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.62
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.62
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.62
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.62
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.62
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.61
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.61
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.61
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.61
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.61
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.61
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.61
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.61
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.61
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.61
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.61
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.61
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.61
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.61
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.6
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.6
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.6
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.6
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.59
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.59
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.59
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.59
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.58
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.57
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.57
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.57
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.56
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.56
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.56
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.55
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.55
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.54
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.53
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.53
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.53
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.52
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.51
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.51
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.5
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.5
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.5
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.5
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.49
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.49
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.48
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.48
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.48
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.47
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.45
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.43
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.43
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.42
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.41
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.39
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.38
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.37
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.36
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.36
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.35
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.34
1u3o_A	82	Huntingtin-associated protein-interacting protein;	99.33
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	99.33
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.33
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.3
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.28
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.92
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.25
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.22
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.84
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.17
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	99.12
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	99.11
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.09
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	99.04
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.86
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.83
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.8
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.78
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.6
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.6
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.58
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.51
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	98.46
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.4
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.35
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	97.86
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	97.85
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	96.97
2kt8_A	76	Probable surface protein; SH3 family, structural g	96.77
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	95.68
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	93.43
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	90.39
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	90.19
3h41_A	311	NLP/P60 family protein; NLPC/P60 family protein, s	80.55

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.74  E-value=2.5e-18  Score=79.28  Aligned_cols=51  Identities=35%  Similarity=0.794  Sum_probs=46.1

Q ss_pred             CccccCCCCCCc-cccCCCCEEEEEEcCCCCcEEEEe-CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGE-LSLSIDDYVVVCQVAPTGWSEGEC-KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~-l~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..++ |+|++||+|.|+++.+.+||.++. +|+.|+||.+||+.+
T Consensus         8 Alydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            8 TLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             ESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             ECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            589999998877 999999999999888889999995 789999999999864

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.74  E-value=9.3e-18  Score=78.47  Aligned_cols=51  Identities=31%  Similarity=0.440  Sum_probs=47.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..++|+|++||+|.|++..+.+||.|+.  +|+.|+||.+|++.+
T Consensus        11 Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A           11 ALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             EceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            589999999999999999999999888899999984  699999999999876

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.72  E-value=2.5e-17  Score=75.35  Aligned_cols=52  Identities=29%  Similarity=0.584  Sum_probs=48.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|+|++||.+.|+...+.+||.++.+|+.|+||.+|++.+.
T Consensus         6 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            6 VEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             ECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEEcC
Confidence            5799999999999999999999998888999999999999999999998764

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.72  E-value=3.7e-17  Score=77.88  Aligned_cols=58  Identities=29%  Similarity=0.597  Sum_probs=52.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCCCCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASK   58 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~   58 (72)
                      |+|+|.+...++|+|.+||+|.|+.+.+.+||.++.+|+.|+||.+|++.+...+...
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~   69 (73)
T 2dbm_A           12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHSG   69 (73)
T ss_dssp             ESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEESSCCSCCS
T ss_pred             EccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEccCCCCCC
Confidence            5799999999999999999999998878899999999999999999999987655544

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.71  E-value=3.5e-17  Score=75.76  Aligned_cols=53  Identities=28%  Similarity=0.580  Sum_probs=48.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc-CCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV-APTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||.|.|+.. ...+||.++.+|+.|+||.+|++.+..
T Consensus         6 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   59 (62)
T 2j6f_A            6 VEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKR   59 (62)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEECC-
T ss_pred             ECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCC
Confidence            57999999999999999999999987 778999999999999999999998754

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=1.1e-16  Score=77.48  Aligned_cols=55  Identities=20%  Similarity=0.342  Sum_probs=50.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.+...++|+|.+|++|.|+++...+||.++..++.|+||.+|++.+...+
T Consensus        13 al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~   67 (80)
T 2ekh_A           13 TCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQ   67 (80)
T ss_dssp             ECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECCCCCC
T ss_pred             ECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEECCCCC
Confidence            5799999999999999999999998888899999999999999999999876543

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.71  E-value=5.2e-17  Score=77.43  Aligned_cols=54  Identities=22%  Similarity=0.317  Sum_probs=49.1

Q ss_pred             CccccCCC--CCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQ--ANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~--~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|+|.+.  ..++|+|++||+|.|+.+...+||.++.+|+.|+||.+||+.+...
T Consensus        14 alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   69 (73)
T 2ebp_A           14 VHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSG   69 (73)
T ss_dssp             ECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEECCCC
T ss_pred             EeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEECCCC
Confidence            57999976  8899999999999999988889999999999999999999988653

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.71  E-value=5.7e-17  Score=76.56  Aligned_cols=56  Identities=34%  Similarity=0.596  Sum_probs=50.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEEeCCeEEEecCCCeEEcccCCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVERQEKAPA   56 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~~~   56 (72)
                      |+|+|.+...++|+|.+||+|.|+...  ..+||.++.+|+.|+||.+|++.+...+.
T Consensus         7 Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~~~~~   64 (69)
T 2ydl_A            7 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEH   64 (69)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECCSCCC
T ss_pred             EcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECCCCcc
Confidence            589999999999999999999999875  78999999999999999999998765443

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.71  E-value=5.7e-17  Score=75.76  Aligned_cols=53  Identities=36%  Similarity=0.557  Sum_probs=49.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||.|.|+...+.+||.|+.+|+.|+||.+|++.+..
T Consensus         6 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   58 (65)
T 2nwm_A            6 LKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPL   58 (65)
T ss_dssp             ECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEECCC
T ss_pred             EeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEcCC
Confidence            57999999999999999999999988888999999999999999999998754

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.71  E-value=4.8e-17  Score=74.37  Aligned_cols=52  Identities=25%  Similarity=0.444  Sum_probs=48.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+..+++|+|.+||.+.|+...+.+||.++.+|+.|+||.+|++.+.
T Consensus         6 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            6 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             ECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            5799999999999999999999998888899999999999999999998764

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.71  E-value=5e-17  Score=74.79  Aligned_cols=51  Identities=25%  Similarity=0.547  Sum_probs=47.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..++|+|.+||.+.|+...+.+||.++.+|+.|+||.+|++.+
T Consensus         9 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            9 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEEC
Confidence            579999999999999999999999888889999999999999999999875

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=76.18  Aligned_cols=55  Identities=27%  Similarity=0.498  Sum_probs=49.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc---CCCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV---APTGWSEGECKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~---~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.+...++|+|.+||+|.|+..   ...+||.++..|+.|+||.+|++.+...+
T Consensus        13 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   70 (73)
T 2dl7_A           13 ALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGP   70 (73)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCSSC
T ss_pred             ECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCCCC
Confidence            57999999999999999999999987   46789999999999999999999886544

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=76.79  Aligned_cols=55  Identities=33%  Similarity=0.602  Sum_probs=50.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.+...++|.|.+||+|.|+.+.+.+||.++.+++.|+||.+|++.+....
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (79)
T 2yun_A           12 ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNA   66 (79)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEESSCS
T ss_pred             ECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEECCCCC
Confidence            5799999999999999999999998888899999999999999999999886533

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.70  E-value=6.9e-17  Score=74.07  Aligned_cols=51  Identities=37%  Similarity=0.701  Sum_probs=47.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..++|+|++||.+.|++..+.+||.++.+|+.|+||.+|++.+
T Consensus         9 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            9 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            579999999999999999999999888889999999999999999999764

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.70  E-value=4.8e-17  Score=76.69  Aligned_cols=54  Identities=20%  Similarity=0.214  Sum_probs=49.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC---CCCcEEEEeCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA---PTGWSEGECKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~---~~~w~~~~~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|+|.++..++|+|.+||.|.|+...   ..+||.++.+|+.|+||.+|++.+...
T Consensus         8 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   64 (69)
T 1wyx_A            8 ALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGM   64 (69)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEEEE
T ss_pred             ECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECCCC
Confidence            579999999999999999999999887   689999999999999999999987543

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.70  E-value=4.5e-17  Score=75.37  Aligned_cols=52  Identities=29%  Similarity=0.593  Sum_probs=48.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+...++|+|.+||.|.|++..+.+||.++.+|+.|+||.+|++.+.
T Consensus        10 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S           10 ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             ECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEECC
Confidence            6899999999999999999999998888899999999999999999997653

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.70  E-value=7.7e-17  Score=75.92  Aligned_cols=53  Identities=28%  Similarity=0.594  Sum_probs=49.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||+|.|+...+.+||.++.+|+.|+||.+|++.+..
T Consensus         8 Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   60 (68)
T 2ew3_A            8 GLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVP   60 (68)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEESCC
T ss_pred             EeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEcCc
Confidence            57999999999999999999999988888999999999999999999998754

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.70  E-value=8e-17  Score=73.64  Aligned_cols=51  Identities=27%  Similarity=0.499  Sum_probs=47.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeC--CeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|++||.|.|++..+.+||.++..  |+.|+||.+|++.+
T Consensus         5 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            5 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             ECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            5799999999999999999999999888899999975  99999999999865

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=75.26  Aligned_cols=53  Identities=25%  Similarity=0.404  Sum_probs=49.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|++||+|.|+.+...+||.++.+++.|+||.+|++.+..
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dmo_A           12 VLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSG   64 (68)
T ss_dssp             ECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEECCC
T ss_pred             ECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEECCC
Confidence            57999999999999999999999988888999999999999999999998753

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.70  E-value=8.3e-17  Score=74.03  Aligned_cols=51  Identities=33%  Similarity=0.703  Sum_probs=47.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..++|+|.+||.+.|+++.+.+||.++.+++.|+||.+|++.+
T Consensus        10 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A           10 ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            579999999999999999999999888889999999999999999999764

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.6e-16  Score=77.00  Aligned_cols=53  Identities=25%  Similarity=0.480  Sum_probs=49.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|.|++||+|.|+.+.+.+||.++..|+.|+||.+|++.+..
T Consensus        15 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (81)
T 2ysq_A           15 AVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN   67 (81)
T ss_dssp             ESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEESSC
T ss_pred             EeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEcCC
Confidence            57999999999999999999999988889999999999999999999998855

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.70  E-value=8.7e-17  Score=73.51  Aligned_cols=51  Identities=33%  Similarity=0.695  Sum_probs=47.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++.+++|+|++||.+.|+++.+.+||.++.+|+.|+||.+|++.+
T Consensus         7 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            7 ALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             ECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            579999999999999999999999888889999999999999999999864

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.70  E-value=8.4e-17  Score=76.64  Aligned_cols=55  Identities=31%  Similarity=0.652  Sum_probs=50.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.++..++|+|++||.|.|+++.+.+||.++.+|+.|+||.+|++.+...|
T Consensus        18 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~p   72 (73)
T 3c0c_A           18 ALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVPLP   72 (73)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCC
T ss_pred             ECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEECCCCC
Confidence            5799999999999999999999998888899999999999999999999876543

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.70  E-value=7.6e-17  Score=75.66  Aligned_cols=53  Identities=28%  Similarity=0.399  Sum_probs=48.9

Q ss_pred             CccccCCC--CCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQ--ANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~--~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++  ..++|+|++|++|.|+.....+||.|..+|+.|+||.+|++.+..
T Consensus         6 al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   60 (67)
T 2bzy_A            6 AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP   60 (67)
T ss_dssp             ECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECCS
T ss_pred             EeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEECCC
Confidence            57999998  899999999999999988888999999999999999999998754

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=75.36  Aligned_cols=53  Identities=23%  Similarity=0.506  Sum_probs=49.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||+|.|+++.+.+||.++..++.|+||.+|++.+..
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dl4_A           12 ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSG   64 (68)
T ss_dssp             ESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECCC
T ss_pred             EeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECCC
Confidence            57999999999999999999999998888999999999999999999998754

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.70  E-value=9.5e-17  Score=74.79  Aligned_cols=51  Identities=33%  Similarity=0.694  Sum_probs=47.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..++|+|.+|+.|.|++..+.+||.++.+|+.|+||.+|++.+
T Consensus        14 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B           14 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR   64 (65)
T ss_dssp             ECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEC
Confidence            579999999999999999999999888889999999999999999999875

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=1.4e-16  Score=76.91  Aligned_cols=55  Identities=33%  Similarity=0.703  Sum_probs=50.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.+...++|+|++|++|.|+.....+||.++.+|+.|+||.+|++.+...|
T Consensus        22 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~p   76 (79)
T 1x69_A           22 ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGP   76 (79)
T ss_dssp             ESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECCCCC
T ss_pred             ECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECCCCC
Confidence            5799999999999999999999998888899999999999999999999886544

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.69  E-value=1e-16  Score=73.24  Aligned_cols=51  Identities=27%  Similarity=0.538  Sum_probs=47.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|.+|+.+.|+.....+||.++.+|+.|+||.+|++.+
T Consensus         7 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            7 ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEC
Confidence            579999999999999999999999888889999999999999999999865

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.69  E-value=2.3e-17  Score=79.79  Aligned_cols=55  Identities=25%  Similarity=0.550  Sum_probs=50.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.++..++|+|.+||+|.|+...+.+||.|+..|+.|+||.+|++.+...|
T Consensus        23 Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~~~~p   77 (79)
T 1z9q_A           23 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFP   77 (79)
T ss_dssp             ESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEESSCCC
T ss_pred             EcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEECCCCC
Confidence            5799999999999999999999998888999999999999999999999886544

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.69  E-value=1.3e-16  Score=72.79  Aligned_cols=52  Identities=37%  Similarity=0.663  Sum_probs=48.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|+|.+|+.+.+++....+||.+..+|+.|+||.+|+++..
T Consensus         6 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            6 VXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             ECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             ECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEECC
Confidence            5799999999999999999999998888899999999999999999998753

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.69  E-value=1.4e-16  Score=74.11  Aligned_cols=52  Identities=37%  Similarity=0.695  Sum_probs=48.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+...++|+|.+||+|.|+.....+||.++.+|+.|+||.+|++.+.
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   62 (64)
T 2ak5_A           11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK   62 (64)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEcC
Confidence            5799999999999999999999998888899999999999999999998774

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.69  E-value=1.5e-16  Score=74.83  Aligned_cols=53  Identities=23%  Similarity=0.484  Sum_probs=48.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||.|.|++..+.+||.++.+|+.|+||.+|++.+..
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2djq_A           12 ALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISG   64 (68)
T ss_dssp             ECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETTCS
T ss_pred             ECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEcCC
Confidence            57999999999999999999999988888999999999999999999987644

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.69  E-value=1.4e-16  Score=72.76  Aligned_cols=51  Identities=35%  Similarity=0.742  Sum_probs=47.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|.+|+.+.|++....+||.++.+++.|+||.+|++.+
T Consensus         7 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEEC
Confidence            579999999999999999999999888889999999999999999999875

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.69  E-value=1.2e-16  Score=77.29  Aligned_cols=53  Identities=19%  Similarity=0.393  Sum_probs=48.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCC-cEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTG-WSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~-w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|++||+|.|++..+.+ ||.|+.+|+.|+||.+||+.+..
T Consensus        15 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   68 (80)
T 2i0n_A           15 ALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLS   68 (80)
T ss_dssp             ESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESS
T ss_pred             ECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCC
Confidence            579999999999999999999999876676 99999999999999999998854

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=2.4e-16  Score=77.48  Aligned_cols=56  Identities=36%  Similarity=0.670  Sum_probs=50.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPA   56 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~   56 (72)
                      |+|+|.++..++|.|++||+|.|+.+...+||.++.+++.|+||.+|++.+...+.
T Consensus        22 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~   77 (88)
T 2cub_A           22 VKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPL   77 (88)
T ss_dssp             ESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEECCCCCS
T ss_pred             EccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEECCCccc
Confidence            57999999999999999999999988888999999999999999999998865443

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.69  E-value=1.5e-16  Score=72.69  Aligned_cols=51  Identities=39%  Similarity=0.787  Sum_probs=47.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..++|+|.+||.+.|+.+.+.+||.++.+++.|+||.+|++.+
T Consensus         8 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            8 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            579999999999999999999999888889999999999999999999754

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.69  E-value=4.4e-17  Score=76.16  Aligned_cols=52  Identities=27%  Similarity=0.545  Sum_probs=48.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|+|.+||+|.|+.+.+.+||.|+.+|+.|+||.+|++.+.
T Consensus         6 Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   57 (65)
T 2fei_A            6 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   57 (65)
T ss_dssp             CSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBCC
T ss_pred             ECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEcC
Confidence            6899999999999999999999998888899999999999999999998764

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=3.8e-16  Score=76.71  Aligned_cols=53  Identities=28%  Similarity=0.399  Sum_probs=48.4

Q ss_pred             CccccCCC--CCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQ--ANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~--~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+.  ..++|.|++||+|.|+.+.+.+||.|..+|+.|+||.+||+.+..
T Consensus        21 alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   75 (88)
T 2dbk_A           21 AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP   75 (88)
T ss_dssp             ECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEECCS
T ss_pred             EcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEECCC
Confidence            57999955  899999999999999988888999999999999999999998854

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.68  E-value=3.7e-16  Score=75.21  Aligned_cols=53  Identities=25%  Similarity=0.514  Sum_probs=49.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||+|.|+...+.+||.++.+|+.|+||.+|++.+..
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (78)
T 2yuo_A           12 ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDE   64 (78)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEECC
T ss_pred             ECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEECCC
Confidence            57999999999999999999999998888999999999999999999998854

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.68  E-value=1.6e-16  Score=75.53  Aligned_cols=53  Identities=17%  Similarity=0.438  Sum_probs=49.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+|+.|.|+...+.+||.++..++.|+||.+|++.+..
T Consensus        10 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   62 (73)
T 3thk_A           10 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDP   62 (73)
T ss_dssp             ECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             ECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEECCC
Confidence            57999999999999999999999988888999999999999999999998854

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.68  E-value=1.6e-16  Score=73.85  Aligned_cols=51  Identities=22%  Similarity=0.529  Sum_probs=46.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|.+||.|.|+++.  ..+||.++.+|+.|+||.+|++.+
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A           11 TLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             ESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEEC
Confidence            579999999999999999999999774  678999999999999999999875

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.68  E-value=2e-16  Score=72.72  Aligned_cols=51  Identities=25%  Similarity=0.587  Sum_probs=46.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..++|+|++||.|.|++..  ..+||.++.+|+.|+||.+|++.+
T Consensus         8 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            8 ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEEC
Confidence            579999999999999999999999875  678999999999999999999754

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=4e-16  Score=77.88  Aligned_cols=55  Identities=20%  Similarity=0.327  Sum_probs=48.4

Q ss_pred             CccccCCC--------CCCccccCCCCEEEEEE-cCCCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQ--------ANGELSLSIDDYVVVCQ-VAPTGWSEGECKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~--------~~~~l~~~~g~~i~v~~-~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.+.        ...+|.|++|++|.|+. .+..+||.++.+|+.|+||.+||+.+....
T Consensus        22 Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~   85 (97)
T 2csq_A           22 ALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQADD   85 (97)
T ss_dssp             CSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECCCCS
T ss_pred             EccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECCCCc
Confidence            68999998        78899999999999995 456789999999999999999999986533

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=3.5e-16  Score=76.82  Aligned_cols=53  Identities=23%  Similarity=0.473  Sum_probs=49.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||+|.|+.+.+.+||.++..++.|+||.+|++.+..
T Consensus        22 Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   74 (88)
T 1x2q_A           22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLN   74 (88)
T ss_dssp             ESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESCSS
T ss_pred             EcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCC
Confidence            57999999999999999999999988888999999999999999999997754

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.68  E-value=2.4e-16  Score=74.05  Aligned_cols=53  Identities=34%  Similarity=0.538  Sum_probs=49.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||.|.|++..+.+||.++.+++.|+||.+|++.+..
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dl3_A           12 AKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSG   64 (68)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEECCS
T ss_pred             ECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEECCC
Confidence            57999999999999999999999988888999999999999999999998754

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.68  E-value=2.2e-16  Score=76.50  Aligned_cols=55  Identities=35%  Similarity=0.570  Sum_probs=49.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc--CCCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV--APTGWSEGECKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.+...++|+|++||+|.|+..  .+.+||.++..++.|+||.+|++.+...+
T Consensus        22 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   78 (81)
T 1x43_A           22 VLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSGP   78 (81)
T ss_dssp             ESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECCCCC
T ss_pred             EcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECCCCC
Confidence            57999999999999999999999987  35899999999999999999999886543

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=1.3e-16  Score=75.38  Aligned_cols=54  Identities=31%  Similarity=0.565  Sum_probs=49.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|+|.++..++|+|.+||.|.|++....+||.++..++.|+||.+|++.+...
T Consensus        13 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (70)
T 2ega_A           13 VVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSG   66 (70)
T ss_dssp             CCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEESCCC
T ss_pred             ECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEECCCC
Confidence            689999999999999999999999888899999999999999999999987653

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=2.9e-16  Score=75.64  Aligned_cols=53  Identities=30%  Similarity=0.500  Sum_probs=49.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||+|.|+++...+||.++.+|+.|+||.+|++.+..
T Consensus        22 al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   74 (78)
T 2ed0_A           22 AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISG   74 (78)
T ss_dssp             ECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEECSS
T ss_pred             ECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEcCC
Confidence            57999999999999999999999988888999999999999999999998743

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.68  E-value=1.6e-16  Score=73.49  Aligned_cols=52  Identities=31%  Similarity=0.424  Sum_probs=47.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|+|.+||+|.|+.....+||.++  .+|+.|+||.+|++.+.
T Consensus         8 al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            8 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             ECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            57999999999999999999999988889999999  68999999999998763

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.68  E-value=6.5e-16  Score=76.57  Aligned_cols=54  Identities=33%  Similarity=0.728  Sum_probs=48.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEEeCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|+|.++..++|+|.+||+|.|+.+.  +.+||.++.+|+.|+||.+|++.+...
T Consensus        10 Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   65 (93)
T 1uff_A           10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             ESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             ECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCCc
Confidence            579999999999999999999999765  679999999999999999999988643

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.67  E-value=2.5e-16  Score=72.71  Aligned_cols=51  Identities=22%  Similarity=0.495  Sum_probs=47.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|.+|+.+.+++....+||.++.+|+.|+||.+|++.+
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A           11 VLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             ECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEEC
Confidence            579999999999999999999999888889999999999999999999865

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=3.2e-16  Score=76.56  Aligned_cols=53  Identities=23%  Similarity=0.443  Sum_probs=49.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc--CCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV--APTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||+|.|+..  ...+||.++..|+.|+||.+||+.+..
T Consensus        13 al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   67 (85)
T 2dlp_A           13 ALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAA   67 (85)
T ss_dssp             ESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCC
T ss_pred             ECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCC
Confidence            58999999999999999999999976  788999999999999999999998854

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.67  E-value=2.2e-16  Score=76.20  Aligned_cols=53  Identities=26%  Similarity=0.530  Sum_probs=48.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCC----CCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAP----TGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~----~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||+|.|+.+.+    .+||.++.+|+.|+||.+|++.+..
T Consensus        18 Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   74 (79)
T 1uhc_A           18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES   74 (79)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             ECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCC
Confidence            5799999999999999999999998765    7999999999999999999998754

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.67  E-value=3.2e-16  Score=76.36  Aligned_cols=53  Identities=17%  Similarity=0.422  Sum_probs=49.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||.|.|+...+.+||.+..+|+.|+||.+|++.+..
T Consensus        22 Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   74 (83)
T 1neg_A           22 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAA   74 (83)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCT
T ss_pred             EccccCCCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEECCC
Confidence            57999999999999999999999988888999999999999999999998743

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.67  E-value=3.2e-16  Score=74.13  Aligned_cols=53  Identities=23%  Similarity=0.394  Sum_probs=48.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC-CCCcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA-PTGWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+|+.|.|+... ..+||.++.  +|+.|+||.+|++.+..
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (71)
T 2jt4_A           11 VQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRD   66 (71)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTT
T ss_pred             EcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCC
Confidence            579999999999999999999999876 789999997  89999999999998754

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=2.6e-16  Score=74.74  Aligned_cols=53  Identities=25%  Similarity=0.424  Sum_probs=48.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|++|++|.|+.+...+||.++.+|+.|+||.+|++.+..
T Consensus        14 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (72)
T 2dl8_A           14 AKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDT   66 (72)
T ss_dssp             ESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEECCS
T ss_pred             ECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEcCC
Confidence            57999999999999999999999987778999999999999999999998754

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.67  E-value=1.1e-16  Score=75.18  Aligned_cols=52  Identities=31%  Similarity=0.538  Sum_probs=47.8

Q ss_pred             CccccCCC--CCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQ--ANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~--~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+.  ..++|+|++||+|.|+.+...+||.|..+|+.|+||.+|++.+.
T Consensus        11 alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   64 (67)
T 2eyx_A           11 VIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLD   64 (67)
T ss_dssp             ECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCBC
T ss_pred             EeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEcC
Confidence            57999998  88899999999999998888899999999999999999998763

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.67  E-value=2.2e-16  Score=74.80  Aligned_cols=52  Identities=29%  Similarity=0.563  Sum_probs=48.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|+|++||.|.|+++.+.+||.++.+|+.|+||.+|++.+.
T Consensus        18 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   69 (72)
T 4glm_A           18 ALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCP   69 (72)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEEC
T ss_pred             ECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEECC
Confidence            5799999999999999999999998888899999999999999999999874

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.67  E-value=2.6e-16  Score=71.92  Aligned_cols=50  Identities=26%  Similarity=0.575  Sum_probs=46.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   50 (72)
                      |+|+|.+...++|+|.+||.|.|+.....+||.++.+++.|+||.+|+++
T Consensus         8 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            8 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             ECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            57999999999999999999999988888999999999999999999974

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=1.9e-16  Score=75.93  Aligned_cols=53  Identities=23%  Similarity=0.431  Sum_probs=48.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||+|.|++..+.+||.++.+|+.|+||.+|++.+..
T Consensus        15 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (76)
T 2epd_A           15 ACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAG   67 (76)
T ss_dssp             ESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECCSS
T ss_pred             ECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCC
Confidence            57999999999999999999999987778999999999999999999998754

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.67  E-value=2.5e-16  Score=74.52  Aligned_cols=55  Identities=24%  Similarity=0.458  Sum_probs=49.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc--CCCCcEEEE-eCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV--APTGWSEGE-CKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~--~~~~w~~~~-~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.+...++|+|.+|+.|.|+..  ...+||.++ .+|+.|+||.+|++.+...+
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~   68 (71)
T 1u5s_A           11 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGP   68 (71)
T ss_dssp             ESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSC
T ss_pred             EcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCCCC
Confidence            57999999999999999999999987  678999998 79999999999999886543

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=2.5e-16  Score=74.02  Aligned_cols=52  Identities=27%  Similarity=0.571  Sum_probs=48.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+...++|+|.+||+|.|+...+.+||.++.+++.|+||.+|++.+.
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 1x2k_A           12 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS   63 (68)
T ss_dssp             ESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEECC
T ss_pred             ECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEcC
Confidence            5799999999999999999999998888899999999999999999999874

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.67  E-value=2.4e-16  Score=74.08  Aligned_cols=51  Identities=25%  Similarity=0.523  Sum_probs=46.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCC-----eEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKG-----QAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g-----~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..++|+|++||.|.|+.+.+.+||.++..+     +.|+||.+|++.+
T Consensus        12 Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A           12 AQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             ESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             ECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            57999999999999999999999988888999999644     8999999999865

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.67  E-value=5.2e-16  Score=73.80  Aligned_cols=53  Identities=36%  Similarity=0.645  Sum_probs=48.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||+|.|+...  ..+||.|+.+|+.|+||.+|++.+..
T Consensus        14 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   68 (73)
T 2k9g_A           14 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP   68 (73)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             ECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECCc
Confidence            579999999999999999999999875  78999999999999999999998754

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.66  E-value=2.5e-16  Score=73.49  Aligned_cols=52  Identities=21%  Similarity=0.298  Sum_probs=47.6

Q ss_pred             CccccCC-CCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDA-QANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~-~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+ ...++|+|.+||+|.|+.....+||.++  .+|+.|+||.+|++.+.
T Consensus        10 alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A           10 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             ESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            5799999 9999999999999999988788999999  68999999999998764

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=2.2e-16  Score=74.21  Aligned_cols=52  Identities=21%  Similarity=0.415  Sum_probs=48.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+...++|+|.+||+|.|++..+.+||.++..++.|+||.+|++.+.
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 1x2p_A           12 AIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS   63 (68)
T ss_dssp             ESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECCC
T ss_pred             ECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEECC
Confidence            5799999999999999999999998888899999999999999999998764

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.66  E-value=4.1e-16  Score=73.48  Aligned_cols=53  Identities=32%  Similarity=0.494  Sum_probs=48.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||+|.|+.+...+||.++..++.|+||.+|++.+..
T Consensus        13 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (69)
T 2dil_A           13 ALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSG   65 (69)
T ss_dssp             CCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             ECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            68999999999999999999999988888999999999999999999987643

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.66  E-value=2.1e-16  Score=73.57  Aligned_cols=52  Identities=27%  Similarity=0.545  Sum_probs=48.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+...++|+|.+|+.|.|+++.+.+||.++.+|+.|+||.+|++.+.
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A           12 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEECc
Confidence            5799999999999999999999998877899999999999999999998764

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.66  E-value=1.4e-16  Score=76.32  Aligned_cols=53  Identities=34%  Similarity=0.671  Sum_probs=49.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||+|.|+.+.+.+||.++.+|+.|+||.+|++.+..
T Consensus        15 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (76)
T 1ujy_A           15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             CCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCH
T ss_pred             ECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEECCc
Confidence            68999999999999999999999988788999999999999999999998854

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=4.5e-16  Score=73.66  Aligned_cols=53  Identities=23%  Similarity=0.523  Sum_probs=49.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||+|.|++....+||.++..++.|+||.+|++.+..
T Consensus        13 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (71)
T 2dnu_A           13 TVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKD   65 (71)
T ss_dssp             CSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEECCC
T ss_pred             ECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEccC
Confidence            68999999999999999999999988788999999889999999999998754

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.66  E-value=2e-16  Score=72.07  Aligned_cols=50  Identities=22%  Similarity=0.538  Sum_probs=46.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~   50 (72)
                      |+|+|.+...++|+|.+||.+.|+...+.+||.++ .+|+.|+||.+|++.
T Consensus         6 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~   56 (57)
T 1cka_A            6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             ECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEE
Confidence            57999999999999999999999988888999999 789999999999975

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.66  E-value=2.9e-16  Score=74.36  Aligned_cols=53  Identities=32%  Similarity=0.436  Sum_probs=48.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||+|.|+.....+||.|+  ..|+.|+||.+|++.+..
T Consensus        11 al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~   65 (71)
T 2fpf_A           11 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK   65 (71)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC-
T ss_pred             ECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCC
Confidence            57999999999999999999999988889999999  689999999999998754

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.66  E-value=3.6e-16  Score=74.30  Aligned_cols=51  Identities=20%  Similarity=0.451  Sum_probs=47.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|.+||+|.|+...+.+||.++.  .|+.|+||.+|++.+
T Consensus        20 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           20 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             ECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            579999999999999999999999888889999996  899999999999875

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.66  E-value=1.9e-16  Score=72.85  Aligned_cols=49  Identities=22%  Similarity=0.421  Sum_probs=45.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE   49 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~   49 (72)
                      |+|+|.++..++|+|++||.|.|+...+.+||.++.+|+.|+||.+|++
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~   59 (60)
T 2gnc_A           11 AKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV   59 (60)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEE
T ss_pred             ECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEE
Confidence            5799999999999999999999998777899999999999999999986

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.66  E-value=4.3e-16  Score=72.26  Aligned_cols=51  Identities=31%  Similarity=0.579  Sum_probs=47.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|.+|+.|.++.....+||.++.  .|+.|+||.+|++.+
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A           11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             ECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            579999999999999999999999887889999996  899999999999875

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.66  E-value=5.2e-16  Score=71.52  Aligned_cols=52  Identities=27%  Similarity=0.583  Sum_probs=47.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEE-EecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAG-WFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G-~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|+|++||.|.|+.....+||.++..+..| +||.+|++.+.
T Consensus         8 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            8 ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEECC
T ss_pred             ECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEECC
Confidence            57999999999999999999999988888999999988886 99999998763

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.66  E-value=2.8e-16  Score=73.38  Aligned_cols=52  Identities=21%  Similarity=0.509  Sum_probs=48.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|+|++||+|.|+...+.+||.++ .+|+.|+||.+|+....
T Consensus         8 Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   60 (65)
T 1b07_A            8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYH   60 (65)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC
T ss_pred             ECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecC
Confidence            57999999999999999999999988888999999 79999999999998764

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.66  E-value=2.9e-16  Score=75.24  Aligned_cols=53  Identities=23%  Similarity=0.439  Sum_probs=48.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCC---eEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKG---QAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g---~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||+|.|+++.+.+||.++..+   +.|+||.+||+.+..
T Consensus        15 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~   70 (76)
T 2ed1_A           15 TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD   70 (76)
T ss_dssp             ESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCC
T ss_pred             ECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCC
Confidence            57999999999999999999999988888999999765   999999999998754

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.66  E-value=4.2e-16  Score=74.26  Aligned_cols=53  Identities=23%  Similarity=0.417  Sum_probs=48.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||.|.|+.+.+.+||.++.  +|+.|+||.+|++.+..
T Consensus        10 Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~   64 (73)
T 2lcs_A           10 ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP   64 (73)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCS
T ss_pred             ECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            579999999999999999999999888889999996  48999999999998754

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.66  E-value=4e-16  Score=70.34  Aligned_cols=49  Identities=35%  Similarity=0.756  Sum_probs=45.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCC-CCcEEEEeCCeEEEecCCCeE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAP-TGWSEGECKGQAGWFPLAYVE   49 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~   49 (72)
                      |+|+|.+...++|+|++||.|.|++... .+||.++.+|+.|+||.+|++
T Consensus         5 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             BCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             ECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            5899999999999999999999998774 789999999999999999874

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.65  E-value=2.1e-16  Score=74.54  Aligned_cols=52  Identities=23%  Similarity=0.548  Sum_probs=47.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||+|.|++. +.+||.++.+|+.|+||.+|++.+..
T Consensus        13 al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (69)
T 1uhf_A           13 ALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             CSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCC
T ss_pred             EeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEeCCcEEEEchHHeEECCC
Confidence            68999999999999999999999877 68899999999999999999998754

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=5.9e-16  Score=74.04  Aligned_cols=53  Identities=21%  Similarity=0.446  Sum_probs=47.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe----CCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC----KGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~----~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|+|.++ .++|+|++||+|.|+++...+||.++.    +++.|+||.+|++.+...
T Consensus        15 alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~~   71 (75)
T 2egc_A           15 SIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSG   71 (75)
T ss_dssp             ECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCSC
T ss_pred             ECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCCC
Confidence            57999999 999999999999999888889999995    478999999999987643

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.65  E-value=4.1e-16  Score=72.12  Aligned_cols=50  Identities=24%  Similarity=0.507  Sum_probs=46.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   50 (72)
                      |+|+|.+...++|+|.+||.|.|+...+.+||.++..++.|+||.+|++.
T Consensus        10 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   59 (62)
T 1uj0_A           10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   59 (62)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             ECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEE
Confidence            57999999999999999999999988888999999999999999999974

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=6e-16  Score=73.65  Aligned_cols=53  Identities=38%  Similarity=0.638  Sum_probs=47.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|++||+|.|+++.  +.+||.++.+++.|+||.+|++.+..
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (73)
T 2dm1_A           12 ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGI   66 (73)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECCC
T ss_pred             ECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcCC
Confidence            579999999999999999999999876  44899999999999999999998753

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.65  E-value=4.8e-16  Score=75.08  Aligned_cols=53  Identities=17%  Similarity=0.476  Sum_probs=48.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||.|.|+...+.+||.++.  +|+.|+||.+|++.+..
T Consensus        10 Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   64 (79)
T 3cqt_A           10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDR   64 (79)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC--
T ss_pred             ECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCc
Confidence            579999999999999999999999888889999997  99999999999998864

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.65  E-value=4.2e-16  Score=73.62  Aligned_cols=53  Identities=36%  Similarity=0.646  Sum_probs=48.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||+|.|+...  ..+||.++.+|+.|+||.+|++.+..
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   66 (70)
T 2da9_A           12 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSG   66 (70)
T ss_dssp             ECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECCC
T ss_pred             ECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECCC
Confidence            579999999999999999999999874  78999999999999999999998754

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.65  E-value=3.3e-16  Score=73.58  Aligned_cols=54  Identities=20%  Similarity=0.383  Sum_probs=46.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.++..++|+|.+|+.+.|+.++ .+||.++ .+|+.|+||.+|+..+...+
T Consensus         9 Alydy~a~~~~ELsf~~Gd~i~vl~~~-~~Ww~~~~~~g~~G~~Psnyv~~~~~~~   63 (67)
T 2b86_A            9 AKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNAANRTGYVPSNYVERKLEHH   63 (67)
T ss_dssp             ESSCBCCSSTTSCCBCTTCEEEEEECS-SSSCEEECTTSCEEECCCCSEEEC----
T ss_pred             EeeeECCCCCCccccCCCCEEEEEecC-CCeEEEEeCCCCEEEeChHHEeEcCCCC
Confidence            589999999999999999999999874 7899999 68999999999999876544

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.65  E-value=6e-16  Score=71.02  Aligned_cols=51  Identities=24%  Similarity=0.404  Sum_probs=46.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc-CCCCcEEEEe--CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV-APTGWSEGEC--KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~-~~~~w~~~~~--~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+..+++|+|++||.+.|++. ...+||.++.  +++.|+||.+|++.+
T Consensus         7 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            7 VQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             ECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            57999999999999999999999987 4789999997  899999999999753

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.65  E-value=3.3e-16  Score=72.89  Aligned_cols=51  Identities=20%  Similarity=0.451  Sum_probs=46.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeC--------CeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--------GQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~--------g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|.+|+.|.|+.....+||.++..        ++.|+||.+|++.+
T Consensus         6 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            6 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             EcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            5799999999999999999999999888899999954        88999999999865

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.65  E-value=4.2e-16  Score=73.59  Aligned_cols=51  Identities=20%  Similarity=0.425  Sum_probs=45.5

Q ss_pred             CccccCCCCCC-ccccCCCCEEEEEEcCC-----CCcEEEEe-CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANG-ELSLSIDDYVVVCQVAP-----TGWSEGEC-KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~-~l~~~~g~~i~v~~~~~-----~~w~~~~~-~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++.++ +|+|++|+++.|+.+.+     .+||.++. +|+.|+||.+|++.+
T Consensus        12 aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A           12 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             ECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             EEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            57999999998 99999999999997764     48999997 899999999999753

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.65  E-value=7.9e-16  Score=75.94  Aligned_cols=56  Identities=25%  Similarity=0.464  Sum_probs=50.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc--CCCCcEEEE-eCCeEEEecCCCeEEcccCCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV--APTGWSEGE-CKGQAGWFPLAYVERQEKAPA   56 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~--~~~~w~~~~-~~g~~G~~P~~~v~~~~~~~~   56 (72)
                      |+|+|.+...++|.|.+||+|.|+++  ...+||.++ .+|+.|+||.+|++.+...+.
T Consensus        22 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   80 (91)
T 1wx6_A           22 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPA   80 (91)
T ss_dssp             ESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEESSS
T ss_pred             EeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCCcCC
Confidence            57999999999999999999999987  678999999 799999999999999865443

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.65  E-value=9.6e-16  Score=72.92  Aligned_cols=52  Identities=21%  Similarity=0.507  Sum_probs=48.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+ ..++|+|++|+.|.|+++.+.+||.++.+|+.|+||.+|++.+..
T Consensus         5 alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   56 (73)
T 2kxd_A            5 PLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDS   56 (73)
T ss_dssp             CCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCS
T ss_pred             EeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            6899998 899999999999999998889999999999999999999998754

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.65  E-value=5.7e-16  Score=75.56  Aligned_cols=56  Identities=20%  Similarity=0.449  Sum_probs=50.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEcccCCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQEKAPA   56 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~~~   56 (72)
                      |+|+|.++..++|+|.+|+.|.|+...+.+||.++.  +|+.|+||.+|++.+.....
T Consensus        11 Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~   68 (84)
T 4ag1_C           11 ALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQG   68 (84)
T ss_dssp             ESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTCC-
T ss_pred             EcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCccc
Confidence            579999999999999999999999888889999997  89999999999998866443

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.65  E-value=5.2e-16  Score=73.09  Aligned_cols=52  Identities=27%  Similarity=0.469  Sum_probs=47.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe-CCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC-KGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+...++|+|.+|+.|.|+...+.+||.++. +|+.|+||.+|++...
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A           11 ALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET   63 (69)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHH
T ss_pred             ECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECc
Confidence            579999999999999999999999888889999996 9999999999998764

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=3.8e-16  Score=73.87  Aligned_cols=53  Identities=17%  Similarity=0.263  Sum_probs=48.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC---CCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA---PTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~---~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||+|.|+...   ..+||.++.+|+.|+||.+|++.+..
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (71)
T 2cre_A           12 ALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSG   67 (71)
T ss_dssp             ESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCC
T ss_pred             ECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCC
Confidence            579999999999999999999999886   78999999999999999999998754

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.65  E-value=6.8e-16  Score=72.35  Aligned_cols=51  Identities=20%  Similarity=0.376  Sum_probs=47.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|.+|+.|.|+...+.+||.++ .+|+.|+||.+|++.+
T Consensus         7 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            7 AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             ECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             ECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            57999999999999999999999988888999999 6999999999999876

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=5e-16  Score=74.30  Aligned_cols=51  Identities=25%  Similarity=0.450  Sum_probs=46.9

Q ss_pred             CccccCCCC-------CCccccCCCCEEEEEE-cCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQA-------NGELSLSIDDYVVVCQ-VAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~-------~~~l~~~~g~~i~v~~-~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+..       ..+|+|++||+|.|+. ....+||.++.+|+.|+||.+|++.+
T Consensus        12 Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~   70 (75)
T 2ege_A           12 AALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHM   70 (75)
T ss_dssp             ESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEEC
T ss_pred             ECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEc
Confidence            579999998       8999999999999996 57889999999999999999999976

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.64  E-value=2e-15  Score=72.92  Aligned_cols=53  Identities=28%  Similarity=0.570  Sum_probs=47.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeC-----CeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-----GQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||+|.|++....+||.++..     ++.|+||.+|++.+..
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~   69 (80)
T 1ue9_A           12 VTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGP   69 (80)
T ss_dssp             ECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCS
T ss_pred             ECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCC
Confidence            5799999999999999999999998878999999964     4899999999998854

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.64  E-value=9.7e-16  Score=70.91  Aligned_cols=52  Identities=25%  Similarity=0.474  Sum_probs=46.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEE-cCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQ-VAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~-~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+...++|+|.+|+.+.|+. ..+.+||.++..|+.|+||.+|++.+.
T Consensus        10 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A           10 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             EcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEECC
Confidence            5799999999999999999999997 445679999999999999999998763

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.64  E-value=1e-16  Score=75.36  Aligned_cols=53  Identities=28%  Similarity=0.555  Sum_probs=48.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||+|.|+.....+||.++.+|+.|+||.+|++.+..
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wi7_A           12 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSG   64 (68)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEECCS
T ss_pred             ECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEECCC
Confidence            57999999999999999999999887778999999999999999999998754

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.64  E-value=3.5e-16  Score=74.39  Aligned_cols=50  Identities=26%  Similarity=0.518  Sum_probs=46.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   50 (72)
                      |+|+|.+...++|+|.+||+|.|+...+.+||.++..++.|+||.+|++.
T Consensus        22 Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             ECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            57999999999999999999999987778999999989999999999974

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.64  E-value=1.4e-15  Score=71.62  Aligned_cols=53  Identities=28%  Similarity=0.579  Sum_probs=47.8

Q ss_pred             CccccC-CCCCCccccCCCCEEEEEEcCCCCcEEEEeC--CeEEEecCCCeEEccc
Q 042979            1 VIHPFD-AQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~-~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|. +...++|+|.+||.+.|+.....+||.++..  |+.|+||.+|++.+..
T Consensus         7 alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   62 (69)
T 1ruw_A            7 AAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD   62 (69)
T ss_dssp             ESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCS
T ss_pred             EccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            579996 9999999999999999998888899999965  9999999999998754

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.64  E-value=1.3e-16  Score=79.04  Aligned_cols=55  Identities=27%  Similarity=0.538  Sum_probs=50.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.+...++|+|.+||+|.|+.....+||.++.+|+.|+||.+||+.+...+
T Consensus        23 Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~~~~~   77 (92)
T 2o2o_A           23 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGES   77 (92)
T ss_dssp             ECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECCSSCS
T ss_pred             EccccCCCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEECCCCC
Confidence            5799999999999999999999998878899999999999999999999886533

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.64  E-value=6e-16  Score=73.25  Aligned_cols=51  Identities=20%  Similarity=0.444  Sum_probs=46.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEE-cCCCCcEEEE-eCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQ-VAPTGWSEGE-CKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~-~~~~~w~~~~-~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|.+||.|.|+. ..+.+||.++ .+|+.|+||.+|++..
T Consensus        16 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   68 (71)
T 1csk_A           16 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR   68 (71)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC-
T ss_pred             EceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEc
Confidence            5799999999999999999999998 6778999999 7999999999999865

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.64  E-value=2.5e-15  Score=71.35  Aligned_cols=53  Identities=23%  Similarity=0.404  Sum_probs=47.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|+|.+...++|+|.+|+.|.|+.. ..+||.++ .+|+.|+||.+|++.+...
T Consensus        12 alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   65 (72)
T 2jw4_A           12 AKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKNSA   65 (72)
T ss_dssp             CSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEECCCC
T ss_pred             ECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEcCCC
Confidence            68999999999999999999999987 56899999 5999999999999987543

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.64  E-value=2.4e-16  Score=74.87  Aligned_cols=53  Identities=26%  Similarity=0.441  Sum_probs=47.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEE-cCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQ-VAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~-~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||+|.|+. ..+.+||.++.+|+.|+||.+|++.+..
T Consensus        15 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   68 (72)
T 1ugv_A           15 ALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             EccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCC
Confidence            5799999999999999999998886 4677999999999999999999998754

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=9.5e-16  Score=75.55  Aligned_cols=53  Identities=25%  Similarity=0.481  Sum_probs=48.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeC--CeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|.|.+||+|.|+...+.+||.++..  |+.|+||.+||+.+..
T Consensus        22 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~   76 (90)
T 2yup_A           22 AQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSRE   76 (90)
T ss_dssp             ECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEEC
T ss_pred             EeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            5799999999999999999999998878899999965  9999999999998854

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.63  E-value=6.8e-16  Score=72.81  Aligned_cols=53  Identities=28%  Similarity=0.479  Sum_probs=48.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|++||.|.|++....+||.++  .+++.|+||.+|++.+..
T Consensus        12 al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2cuc_A           12 ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSG   66 (70)
T ss_dssp             CCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCC
T ss_pred             ECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcC
Confidence            68999999999999999999999987778999999  689999999999998754

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.63  E-value=1.3e-15  Score=73.08  Aligned_cols=54  Identities=33%  Similarity=0.585  Sum_probs=48.7

Q ss_pred             CccccCCC-CCCccccCCCCEEEEEEcC-CCCcEEEE-eCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQ-ANGELSLSIDDYVVVCQVA-PTGWSEGE-CKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~-~~~~l~~~~g~~i~v~~~~-~~~w~~~~-~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|+|.+. ..++|+|.+|++|.|+... ..+||.++ .+|+.|+||.+|++.+...
T Consensus        14 al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~   70 (77)
T 2enm_A           14 VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPND   70 (77)
T ss_dssp             ESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECCC
T ss_pred             ECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCCC
Confidence            57999999 9999999999999999875 68999999 8999999999999988543

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.63  E-value=8.1e-16  Score=70.18  Aligned_cols=49  Identities=18%  Similarity=0.521  Sum_probs=45.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCC-CCcEEEEe--CCeEEEecCCCeE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAP-TGWSEGEC--KGQAGWFPLAYVE   49 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~-~~w~~~~~--~g~~G~~P~~~v~   49 (72)
                      |+|+|.+...++|+|++||.+.|++... .+||.++.  +|+.|+||.+|++
T Consensus         6 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            6 VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             ECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            5799999999999999999999998776 79999997  9999999999986

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.63  E-value=8.7e-16  Score=71.96  Aligned_cols=52  Identities=21%  Similarity=0.481  Sum_probs=47.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeC--CeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|+|++||.+.|+++.+.+||.++..  |+.|+||.+|++.+.
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   64 (67)
T 2o9s_A           11 AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK   64 (67)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEE
T ss_pred             ECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECC
Confidence            5799999999999999999999998878899999965  499999999998774

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=6.7e-16  Score=74.60  Aligned_cols=52  Identities=31%  Similarity=0.608  Sum_probs=47.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCC--CCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAP--TGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|+|++||+|.|+.+..  .+||.++.+|+.|+||.+|++.+.
T Consensus        22 al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   75 (80)
T 2d8h_A           22 ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNS   75 (80)
T ss_dssp             CSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCC
T ss_pred             ECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcC
Confidence            6899999999999999999999998764  789999999999999999998664

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.63  E-value=5.1e-16  Score=72.92  Aligned_cols=52  Identities=29%  Similarity=0.585  Sum_probs=47.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+...++|+|.+|+.|.|+.....+||.++ .+|+.|+||.+|++.+.
T Consensus        15 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           15 AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             ECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             EcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            57999999999999999999999988788999999 79999999999998764

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.7e-15  Score=71.48  Aligned_cols=53  Identities=30%  Similarity=0.408  Sum_probs=48.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||.|.|++....+||.++.  .++.|+||.+|++.+..
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct3_A           12 AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSG   66 (70)
T ss_dssp             ESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTC
T ss_pred             ECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCC
Confidence            579999999999999999999999888889999995  59999999999998754

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.63  E-value=6.9e-16  Score=70.61  Aligned_cols=51  Identities=24%  Similarity=0.427  Sum_probs=46.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|.+||.+.|+.....+||.++.  .|+.|+||.+|++.+
T Consensus         6 al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            6 ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             ECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             ECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            579999999999999999999999887889999995  389999999999875

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.63  E-value=8.9e-16  Score=72.29  Aligned_cols=53  Identities=23%  Similarity=0.475  Sum_probs=47.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeE-EEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQA-GWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~-G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+|++|.|+.+...+||.++..+.. |+||.+|++.+..
T Consensus        12 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~   65 (69)
T 2eqi_A           12 ALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISG   65 (69)
T ss_dssp             ESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCS
T ss_pred             ECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECcc
Confidence            5799999999999999999999998878899999976666 9999999998753

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.63  E-value=1.3e-15  Score=69.47  Aligned_cols=50  Identities=30%  Similarity=0.646  Sum_probs=45.5

Q ss_pred             Ccccc-CCCCCCccccCCCCEEEEEEcCCCCcEEEEeC--CeEEEecCCCeEE
Q 042979            1 VIHPF-DAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~-~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~   50 (72)
                      |+|+| .+...++|+|++||.|.|+.....+||.++..  |+.|+||.+|++.
T Consensus         5 al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            5 AAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             ESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            57999 89999999999999999998888899999965  9999999999974

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.62  E-value=1.5e-15  Score=72.07  Aligned_cols=53  Identities=28%  Similarity=0.518  Sum_probs=47.4

Q ss_pred             CccccCC-CCCCccccCCCCEEEEEEc-CCCCcEEEEeC--CeEEEecCCCeEEccc
Q 042979            1 VIHPFDA-QANGELSLSIDDYVVVCQV-APTGWSEGECK--GQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~-~~~~~l~~~~g~~i~v~~~-~~~~w~~~~~~--g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+ +..++|+|.+||+|.|+.. ...+||.++..  ++.|+||.+|++.+..
T Consensus        12 al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   68 (72)
T 1spk_A           12 TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             CSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             EeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCC
Confidence            6899995 8999999999999999976 77899999975  9999999999998754

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1.5e-15  Score=72.76  Aligned_cols=52  Identities=25%  Similarity=0.474  Sum_probs=46.7

Q ss_pred             CccccCCCC-------CCccccCCCCEEEEEEcCC-CCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQA-------NGELSLSIDDYVVVCQVAP-TGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~-------~~~l~~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+..       ..+|+|++||+|.|+.+.+ .+||.++.+++.|+||.+||+.+.
T Consensus        12 Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~   71 (76)
T 2csi_A           12 ALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVS   71 (76)
T ss_dssp             CSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCC
T ss_pred             EcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECC
Confidence            689999998       8999999999999997755 489999999999999999998764

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.62  E-value=1.2e-15  Score=70.46  Aligned_cols=50  Identities=18%  Similarity=0.597  Sum_probs=45.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|++||.|.|++.+ .+||.++  .+|+.|+||.+|++.+
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A           11 ALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            579999999999999999999999885 4899999  5899999999999753

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.62  E-value=1.1e-15  Score=71.90  Aligned_cols=52  Identities=23%  Similarity=0.324  Sum_probs=46.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||.|.|++.+ .+||.++ .+|+.|+||.+|++.+..
T Consensus        13 alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A           13 CNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             ECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            579999999999999999999999875 7899998 589999999999998744

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1e-15  Score=73.67  Aligned_cols=53  Identities=23%  Similarity=0.462  Sum_probs=47.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCC-CCcEEEEeC-CeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAP-TGWSEGECK-GQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||.|.|+++.+ .+||.++.. |+.|+||.+|++.+..
T Consensus        18 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   72 (78)
T 2dl5_A           18 VVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTS   72 (78)
T ss_dssp             ECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSCC
T ss_pred             EceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECCC
Confidence            5799999999999999999999998864 899999965 9999999999987754

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.62  E-value=8e-16  Score=76.67  Aligned_cols=53  Identities=26%  Similarity=0.492  Sum_probs=48.0

Q ss_pred             CccccCCCC------CCccccCCCCEEEEE-EcCCCCcEEEEe-CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQA------NGELSLSIDDYVVVC-QVAPTGWSEGEC-KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~------~~~l~~~~g~~i~v~-~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++.      .++|.|.+||+|.|+ .....+||.++. +|+.|+||.+||+.+..
T Consensus        22 Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~   82 (96)
T 1wie_A           22 ARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQD   82 (96)
T ss_dssp             ESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCS
T ss_pred             ECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCC
Confidence            579999987      899999999999999 777889999997 99999999999998754

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.62  E-value=1.4e-15  Score=71.50  Aligned_cols=52  Identities=21%  Similarity=0.351  Sum_probs=47.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+|+.|.|+.++ .+||.++ .+++.|+||.+|++.+..
T Consensus        12 alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxt_A           12 VLYEFEARNPRELTVVQGEKLEVLDHS-KRWWLVKNEAGRSGYIPSNILEPLSG   64 (68)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEEGGGEECCCC
T ss_pred             ECceECCCCcCcCCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEhHHcEECCC
Confidence            579999999999999999999999885 8899999 899999999999987754

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.61  E-value=8.7e-16  Score=74.13  Aligned_cols=53  Identities=19%  Similarity=0.425  Sum_probs=46.6

Q ss_pred             CccccCCCCCC-ccccCCCCEEEEEEcCCC-----CcEEEEe-CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANG-ELSLSIDDYVVVCQVAPT-----GWSEGEC-KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~-~l~~~~g~~i~v~~~~~~-----~w~~~~~-~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...+ +|+|++||.|.|+.....     +||.++. +|+.|+||.+|++.+..
T Consensus        19 alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   78 (80)
T 2v1r_A           19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR   78 (80)
T ss_dssp             ESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC--
T ss_pred             ECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCC
Confidence            57999999999 999999999999977665     8999996 89999999999998754

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=71.98  Aligned_cols=53  Identities=21%  Similarity=0.459  Sum_probs=47.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeC--CeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||.|.|++..+.+||.++..  ++.|+||.+|++.+..
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ecz_A           12 AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISG   66 (70)
T ss_dssp             ESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSS
T ss_pred             ECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCC
Confidence            5799999999999999999999998777899999975  4999999999998754

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.61  E-value=7.5e-16  Score=70.78  Aligned_cols=52  Identities=21%  Similarity=0.326  Sum_probs=47.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+|+.+.|+.. ..+||.++ .+|+.|+||.+|++.+..
T Consensus         6 al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            6 SKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             ECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            57999999999999999999999988 78999998 689999999999998743

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=71.45  Aligned_cols=52  Identities=31%  Similarity=0.562  Sum_probs=46.3

Q ss_pred             CccccCC-CCCCccccCCCCEEEEEEc-CCCCcEEEEeC--CeEEEecCCCeEEcc
Q 042979            1 VIHPFDA-QANGELSLSIDDYVVVCQV-APTGWSEGECK--GQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~-~~~~~l~~~~g~~i~v~~~-~~~~w~~~~~~--g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+ +..++|+|.+||+|.|+.. ...+||.++..  ++.|+||.+|++.+.
T Consensus        11 al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A           11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             ESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             EeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            5799995 8999999999999999975 77899999965  999999999998763

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.61  E-value=9.1e-16  Score=70.45  Aligned_cols=51  Identities=31%  Similarity=0.569  Sum_probs=44.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC-CCCcEEEEeC-CeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA-PTGWSEGECK-GQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~-~~~w~~~~~~-g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|++||.+.|++.. ..+||.++.. |+.|+||.+|++.+
T Consensus         8 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            8 ALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             ECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             ECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            579999999999999999999998764 4589999976 99999999999753

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.61  E-value=1.2e-15  Score=72.80  Aligned_cols=52  Identities=29%  Similarity=0.505  Sum_probs=47.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC-CCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA-PTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|+|++||+|.|+++. +.+||.++.+|+.|+||.+|++.+.
T Consensus        14 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A           14 AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             ECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEcC
Confidence            579999999999999999999998776 5689999999999999999998753

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.61  E-value=1.8e-15  Score=72.49  Aligned_cols=53  Identities=23%  Similarity=0.472  Sum_probs=48.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeC---CeE------EEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK---GQA------GWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~---g~~------G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||+|.|++....+||.++..   ++.      |+||.+|++.+..
T Consensus        12 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~   73 (77)
T 2d8j_A           12 ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSG   73 (77)
T ss_dssp             ESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCC
T ss_pred             EccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCC
Confidence            5799999999999999999999999888899999965   888      9999999998754

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.61  E-value=1e-15  Score=74.53  Aligned_cols=52  Identities=23%  Similarity=0.436  Sum_probs=46.5

Q ss_pred             Ccccc-CCCCCCccccCCCCEEEEEEcCCCCcEEEEeC------CeEEEecCCCeEEcc
Q 042979            1 VIHPF-DAQANGELSLSIDDYVVVCQVAPTGWSEGECK------GQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~-~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~------g~~G~~P~~~v~~~~   52 (72)
                      |+|+| .++..++|+|++||+|.|+.....+||.|+..      |+.|+||.+||+.+.
T Consensus        23 Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           23 ALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             ESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             EccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            57999 78999999999999999998888899999963      799999999998764

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=5.2e-16  Score=73.51  Aligned_cols=52  Identities=21%  Similarity=0.305  Sum_probs=47.8

Q ss_pred             CccccCC-CCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDA-QANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~-~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+ ...++|+|++||+|.|+...+.+||.++  .+|+.|+||.+|++.+.
T Consensus        12 Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~   66 (71)
T 2gqi_A           12 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVS   66 (71)
T ss_dssp             ESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECC
T ss_pred             ECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECC
Confidence            5899999 9999999999999999988788999999  68999999999999874

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=2.2e-15  Score=70.77  Aligned_cols=51  Identities=25%  Similarity=0.408  Sum_probs=46.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+...++|+|.+||.|.|+++. .+||.++ .+++.|+||.+|++.+.
T Consensus        12 alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~   63 (68)
T 1wxb_A           12 ILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSRSGQAGYVPCNILGEAS   63 (68)
T ss_dssp             CSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEETTTCCBCC
T ss_pred             ECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEHHHeEECC
Confidence            689999999999999999999999875 8899999 59999999999998764

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.61  E-value=1.5e-15  Score=75.20  Aligned_cols=57  Identities=25%  Similarity=0.367  Sum_probs=49.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCC----CCcEEEEeCCe-EEEecCCCeEEcccCCCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAP----TGWSEGECKGQ-AGWFPLAYVERQEKAPAS   57 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~----~~w~~~~~~g~-~G~~P~~~v~~~~~~~~~   57 (72)
                      |+|+|.+...++|+|.+||+|.|+.+..    .+||.++..+. .|+||.+||+.+...+..
T Consensus        22 alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~~~~~   83 (93)
T 1wxu_A           22 AEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRRGR   83 (93)
T ss_dssp             ESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCCBCCS
T ss_pred             ECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCCcccc
Confidence            5899999999999999999999998766    58999997776 999999999988654433

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.61  E-value=2e-15  Score=71.60  Aligned_cols=50  Identities=24%  Similarity=0.419  Sum_probs=46.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe---CCeE---EEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC---KGQA---GWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~---~g~~---G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|.+||.|.| .....+||.++.   +|+.   |+||.+|++.+
T Consensus        15 alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~   70 (72)
T 2kgt_A           15 GLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAER   70 (72)
T ss_dssp             CCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEE
T ss_pred             EcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEc
Confidence            68999999999999999999999 887889999996   7999   99999999865

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.61  E-value=1.7e-15  Score=74.57  Aligned_cols=49  Identities=33%  Similarity=0.607  Sum_probs=45.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC-----CCCcEEEEe-CCeEEEecCCCeE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA-----PTGWSEGEC-KGQAGWFPLAYVE   49 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~-----~~~w~~~~~-~g~~G~~P~~~v~   49 (72)
                      |+|+|.+...++|+|++||+|.|+.+.     +.+||.|+. +|+.|+||.+|++
T Consensus        34 Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~   88 (89)
T 2rf0_A           34 AVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA   88 (89)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEE
T ss_pred             ECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCc
Confidence            579999999999999999999999874     789999997 9999999999986

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=73.58  Aligned_cols=52  Identities=33%  Similarity=0.609  Sum_probs=47.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||+|.|++. ..+||.++.  +++.|+||.+|++.+..
T Consensus        22 al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~   75 (79)
T 1x6b_A           22 ITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISG   75 (79)
T ss_dssp             ESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEES
T ss_pred             ECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCC
Confidence            57999999999999999999999988 889999997  89999999999998743

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.60  E-value=3.2e-15  Score=72.98  Aligned_cols=52  Identities=23%  Similarity=0.473  Sum_probs=47.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||.|.|+++. .+||.++.  +|+.|+||.+|++.+..
T Consensus        30 al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~   83 (86)
T 2oi3_A           30 ALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS   83 (86)
T ss_dssp             ESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGGG
T ss_pred             ECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEccc
Confidence            579999999999999999999999877 59999997  99999999999998754

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.60  E-value=1.9e-15  Score=72.02  Aligned_cols=52  Identities=29%  Similarity=0.593  Sum_probs=47.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||+|.|++.+ .+||.++..++.|+||.+|++.+..
T Consensus        15 al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (74)
T 1j3t_A           15 ALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKSYVKIIPG   66 (74)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEEEC-SSEEEEESTTCCCEEEGGGEEECCC
T ss_pred             ECCCCCCCCCCccCCCCCCEEEEEecC-CCEEEEEECCcEEEEchHHeEECCC
Confidence            579999999999999999999999874 6899999999999999999998754

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=2.9e-15  Score=73.11  Aligned_cols=52  Identities=15%  Similarity=0.376  Sum_probs=48.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+...++|+|++||.|.|+...+.+||.++ .+|+.|+||.+|++.+.
T Consensus        24 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~   76 (85)
T 2yuq_A           24 ALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS   76 (85)
T ss_dssp             ESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECC
T ss_pred             ECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEcc
Confidence            57999999999999999999999988888999998 68999999999999863

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.60  E-value=2.1e-15  Score=74.54  Aligned_cols=55  Identities=18%  Similarity=0.402  Sum_probs=48.4

Q ss_pred             CccccCCCCCC-ccccCCCCEEEEEEcCCC-----CcEEEEe-CCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANG-ELSLSIDDYVVVCQVAPT-----GWSEGEC-KGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~-~l~~~~g~~i~v~~~~~~-----~w~~~~~-~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.+...+ +|+|++||+|.|+.+.+.     +||.|+. +|+.|+||.+|++.+...+
T Consensus        19 alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~~   80 (92)
T 1jqq_A           19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRRK   80 (92)
T ss_dssp             ESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC-
T ss_pred             ECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCCC
Confidence            57999999999 999999999999977665     8999997 8999999999999886543

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=6.6e-15  Score=71.30  Aligned_cols=53  Identities=17%  Similarity=0.300  Sum_probs=46.8

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCC-CcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPT-GWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~-~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||+|.|+..... +||.++.  .|+.|+||.+|++....
T Consensus        22 Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   77 (81)
T 1x6g_A           22 TKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSG   77 (81)
T ss_dssp             ESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECCC
T ss_pred             ECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEccc
Confidence            57999999999999999999999987665 8999984  79999999999987643

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.59  E-value=2e-15  Score=70.68  Aligned_cols=51  Identities=31%  Similarity=0.569  Sum_probs=44.5

Q ss_pred             CccccCCCCCCc-cccCCCCEEEEEE-cCCCCcEEEE--eCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGE-LSLSIDDYVVVCQ-VAPTGWSEGE--CKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~-l~~~~g~~i~v~~-~~~~~w~~~~--~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++ |+|++||+|.|+. ....+||.|+  .+|+.|+||.+|++.+
T Consensus        12 al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A           12 AIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             ESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            579999987776 9999999999885 4577999999  6899999999999875

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.59  E-value=1.8e-15  Score=76.81  Aligned_cols=53  Identities=19%  Similarity=0.336  Sum_probs=46.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc-CCCC--cEEEEeC--------CeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV-APTG--WSEGECK--------GQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~-~~~~--w~~~~~~--------g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|++|++|.|+.+ ...+  ||.|+..        |+.|+||.+||+.+..
T Consensus        27 Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~   90 (108)
T 1i1j_A           27 ALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQT   90 (108)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEE
T ss_pred             ECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccc
Confidence            57999999999999999999999976 3344  9999965        8999999999998754

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=8.1e-15  Score=72.68  Aligned_cols=53  Identities=28%  Similarity=0.664  Sum_probs=47.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc--CC--CCcEEEE--eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV--AP--TGWSEGE--CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~--~~--~~w~~~~--~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|++||+|.|+..  ..  .+||.++  ..|+.|+||.+||+.+..
T Consensus        21 Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   79 (94)
T 2e5k_A           21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADE   79 (94)
T ss_dssp             ECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCS
T ss_pred             ECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEccc
Confidence            57999999999999999999999976  34  8899999  799999999999998753

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.58  E-value=3.9e-15  Score=70.85  Aligned_cols=52  Identities=35%  Similarity=0.615  Sum_probs=46.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe---CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC---KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||.|.|++.+ .+||.|+.   +|+.|+||.+|++.+..
T Consensus        16 al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~~   70 (74)
T 2m0y_A           16 AFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKEA   70 (74)
T ss_dssp             ECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECCC
T ss_pred             EceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEecc
Confidence            579999999999999999999999875 78999996   79999999999987644

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.57  E-value=1.3e-15  Score=76.05  Aligned_cols=53  Identities=28%  Similarity=0.505  Sum_probs=48.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||+|.|+...+.+||.++.+|+.|+||.+|++.+..
T Consensus        39 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   91 (98)
T 1udl_A           39 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTD   91 (98)
T ss_dssp             ESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCC
T ss_pred             ECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEcCC
Confidence            57999999999999999999999988888999999999999999999998754

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.57  E-value=4.4e-16  Score=72.99  Aligned_cols=52  Identities=21%  Similarity=0.392  Sum_probs=47.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+...++|+|.+|+.|.|+...+.+||.++ .+|+.|+||.+|++.+.
T Consensus        13 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A           13 ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             BSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             ECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcC
Confidence            58999999999999999999999988788999999 79999999999998653

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.57  E-value=1.8e-14  Score=76.16  Aligned_cols=53  Identities=36%  Similarity=0.624  Sum_probs=48.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc-CCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV-APTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||+|.|+.+ .+.+||.|+..|+.|+||.+|++.+..
T Consensus        10 Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A           10 ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             ESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSC
T ss_pred             ECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEccc
Confidence            57999999999999999999999987 478999999999999999999998743

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1.2e-14  Score=68.56  Aligned_cols=53  Identities=21%  Similarity=0.486  Sum_probs=46.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC-CCCcEEEEeC-CeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA-PTGWSEGECK-GQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~-~~~w~~~~~~-g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++|+.+.|++.. ..+||.++.. |+.|+||.+|++.+..
T Consensus        12 alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct4_A           12 AIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSG   66 (70)
T ss_dssp             ESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCC
T ss_pred             EcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCC
Confidence            579999999999999999999999765 4569999965 9999999999997743

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.56  E-value=5.4e-15  Score=69.79  Aligned_cols=52  Identities=23%  Similarity=0.554  Sum_probs=45.4

Q ss_pred             CccccCCCCCC--ccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANG--ELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~--~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...+  +|+|.+|+.|.|++. ..+||.++ .+|+.|+||.+|++.+..
T Consensus        10 alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (70)
T 2vkn_A           10 ALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLIDG   64 (70)
T ss_dssp             ESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEEEE
T ss_pred             ECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEECCC
Confidence            57999998654  999999999998876 67899998 699999999999998754

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.56  E-value=2e-14  Score=72.86  Aligned_cols=53  Identities=19%  Similarity=0.459  Sum_probs=48.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||+|.|+...+.+||.++.  +++.|+||.+|++.+..
T Consensus        32 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   86 (109)
T 2yt6_A           32 ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADS   86 (109)
T ss_dssp             ESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESSS
T ss_pred             ECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECCc
Confidence            579999999999999999999999888889999994  89999999999998753

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.55  E-value=1.5e-14  Score=71.16  Aligned_cols=52  Identities=21%  Similarity=0.424  Sum_probs=47.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+|+.+.|+.. ..+||.++.  .|+.|+||.+|++.+..
T Consensus         8 Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   61 (90)
T 3reb_B            8 ALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   61 (90)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             ECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCC
Confidence            57999999999999999999999987 468999996  89999999999998754

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.1e-14  Score=70.17  Aligned_cols=52  Identities=15%  Similarity=0.252  Sum_probs=46.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||+|.|++. +.+||.++.  .|+.|+||.+|++.+..
T Consensus        22 Alydy~a~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           22 VLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             ESSCSSCTTTSCCSSCTTCEEEEEEE-ETTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             EccCCCCCCCCcCCCCCCCEEEEEec-CCCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            58999999999999999999999984 578999995  59999999999987643

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.54  E-value=1.1e-14  Score=75.09  Aligned_cols=51  Identities=29%  Similarity=0.485  Sum_probs=46.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe---CCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC---KGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|.|.+||+|.|++++ .+||.|+.   +|+.|+||.+||+.+.
T Consensus        64 Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           64 AIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             BCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             EccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEec
Confidence            589999999999999999999999775 58999997   8999999999997653

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.53  E-value=6.1e-16  Score=73.25  Aligned_cols=53  Identities=26%  Similarity=0.562  Sum_probs=47.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEE-EecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAG-WFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G-~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+|++|.|+.....+||.++..++.| +||.+|++.+..
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~~~   64 (71)
T 1hsq_A           11 ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN   64 (71)
T ss_dssp             CSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSCSC
T ss_pred             ECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEECCC
Confidence            68999999999999999999999988788999999888776 999999987754

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.53  E-value=3e-15  Score=76.02  Aligned_cols=53  Identities=21%  Similarity=0.435  Sum_probs=46.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeE---EEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQA---GWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~---G~~P~~~v~~~~~   53 (72)
                      |+|||.++..++|+|++||.+.|+.+.+.+||.++..++.   |+||.+||+.+..
T Consensus        10 Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~   65 (108)
T 2rqv_A           10 VLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDI   65 (108)
T ss_dssp             ESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCS
T ss_pred             ECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecC
Confidence            5799999999999999999999987778899999976655   9999999987643

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.53  E-value=9.4e-15  Score=71.46  Aligned_cols=48  Identities=21%  Similarity=0.407  Sum_probs=44.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVE   49 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~   49 (72)
                      |+|+|.+...++|+|.+||.|.|++. ..+||.++ .+|+.|+||.+|++
T Consensus        36 alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~   84 (86)
T 2jxb_A           36 AKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVE   84 (86)
T ss_dssp             ESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBC
T ss_pred             ECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEE
Confidence            57999999999999999999999987 57899999 68999999999986

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.52  E-value=1.4e-14  Score=71.46  Aligned_cols=53  Identities=34%  Similarity=0.535  Sum_probs=45.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc-------------CCC--CcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV-------------APT--GWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~-------------~~~--~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|++||+|.|+..             ...  +||.|+.  .|+.|+||.+||+.+..
T Consensus        16 Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~   85 (90)
T 3o5z_A           16 ALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGP   85 (90)
T ss_dssp             ECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEE
T ss_pred             EeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecc
Confidence            58999999999999999999998842             123  8999985  69999999999998754

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.51  E-value=1.1e-14  Score=74.72  Aligned_cols=51  Identities=31%  Similarity=0.482  Sum_probs=46.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEE-----cCCCCcEEEEe----------CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQ-----VAPTGWSEGEC----------KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~-----~~~~~w~~~~~----------~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|++||+|.|+.     ....+||.|+.          +|+.|+||.+|++.+
T Consensus        49 Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           49 AQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             ECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            5799999999999999999999998     77889999985          278999999999875

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.51  E-value=5.5e-15  Score=71.80  Aligned_cols=53  Identities=25%  Similarity=0.493  Sum_probs=45.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc---------------CCCCcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV---------------APTGWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~---------------~~~~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+|+.|.|+..               ...+||.|+.  +|+.|+||.+|++.+..
T Consensus        10 Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A           10 ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             ECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             EccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            57999999999999999999998853               2348999973  69999999999998754

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.50  E-value=1.8e-13  Score=65.72  Aligned_cols=50  Identities=26%  Similarity=0.456  Sum_probs=41.5

Q ss_pred             ccccCCC---CCCccccCCCCEEEEEEcC-CCCcEEEE--eCCeEEEecCCCeEEc
Q 042979            2 IHPFDAQ---ANGELSLSIDDYVVVCQVA-PTGWSEGE--CKGQAGWFPLAYVERQ   51 (72)
Q Consensus         2 ~~~~~~~---~~~~l~~~~g~~i~v~~~~-~~~w~~~~--~~g~~G~~P~~~v~~~   51 (72)
                      +++|.+.   ..++|+|++||+|.|+... ..+||.|+  .+|+.|+||.+||+.+
T Consensus        21 ~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~   76 (78)
T 1k1z_A           21 YYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   76 (78)
T ss_dssp             BSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEES
T ss_pred             CCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            3455553   2589999999999999884 78999999  5899999999999865

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.50  E-value=9.1e-16  Score=73.68  Aligned_cols=50  Identities=18%  Similarity=0.377  Sum_probs=46.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~   50 (72)
                      |+|+|.+...++|+|.+||+|.|++..+.+||.++ .+|+.|+||.+|++.
T Consensus        25 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           25 ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   75 (77)
T ss_dssp             CCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCC
T ss_pred             ECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEE
Confidence            68999999999999999999999988888999999 599999999999974

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.50  E-value=7.5e-14  Score=80.03  Aligned_cols=54  Identities=30%  Similarity=0.499  Sum_probs=50.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|||.+...++|+|.+||.+.|+...+.+||.|+.+|+.|+||.+|++.+...
T Consensus         7 a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   60 (283)
T 3jv3_A            7 GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDM   60 (283)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEETTEEEEEEGGGEEEGGGS
T ss_pred             EccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEECCCCCcCCCccccccCcc
Confidence            579999999999999999999999988889999999999999999999987543

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.50  E-value=2e-14  Score=74.17  Aligned_cols=53  Identities=23%  Similarity=0.425  Sum_probs=47.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe---CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC---KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||.+.|+...+.+||.++.   .|+.|+||.+|++.+..
T Consensus         8 Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~   63 (120)
T 2kym_A            8 TLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDL   63 (120)
T ss_dssp             ECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECS
T ss_pred             EcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccC
Confidence            579999999999999999999999888889999984   67889999999998743

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.49  E-value=1e-13  Score=76.33  Aligned_cols=53  Identities=25%  Similarity=0.407  Sum_probs=49.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||+|.|+.....+||.++.+|+.|+||.+|++.+..
T Consensus        86 al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A           86 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             eccccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECCC
Confidence            47999999999999999999999998888999999999999999999998754

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.49  E-value=6.3e-14  Score=77.98  Aligned_cols=52  Identities=35%  Similarity=0.731  Sum_probs=48.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|+|.+||.|.|+...+.+||.|+.+|+.|+||.+||+.+.
T Consensus       163 al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~  214 (217)
T 1gri_A          163 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVN  214 (217)
T ss_dssp             ESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEEEC
T ss_pred             ecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEECCeEEEEeHHHeEECC
Confidence            5799999999999999999999999888899999999999999999999874

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.48  E-value=7.2e-14  Score=75.76  Aligned_cols=50  Identities=18%  Similarity=0.372  Sum_probs=46.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~   50 (72)
                      |+|+|.+...++|+|.+||+|.|+.+.+.+||.|+ .+|+.|+||.+||+.
T Consensus       123 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          123 GTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             EecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            57999999999999999999999998889999999 699999999999974

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.48  E-value=6.8e-14  Score=65.90  Aligned_cols=47  Identities=28%  Similarity=0.443  Sum_probs=39.4

Q ss_pred             cCCCCCCccccCCCCEEEEEEc-CCCCcEEEE--eCCeEEEecCCCeEEc
Q 042979            5 FDAQANGELSLSIDDYVVVCQV-APTGWSEGE--CKGQAGWFPLAYVERQ   51 (72)
Q Consensus         5 ~~~~~~~~l~~~~g~~i~v~~~-~~~~w~~~~--~~g~~G~~P~~~v~~~   51 (72)
                      |.+...++|+|++||+|.|++. .+.+||.|+  .+|+.|+||.+||+.+
T Consensus        19 ~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   68 (70)
T 1gcq_C           19 PPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (70)
T ss_dssp             CGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEEC
Confidence            3334455999999999999987 578999996  5899999999999865

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.48  E-value=4.4e-14  Score=79.54  Aligned_cols=54  Identities=22%  Similarity=0.501  Sum_probs=49.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|+|.+...++|+|.+||+|.|+++.+.+||.++ .+|+.|+||.+||+.+...
T Consensus       141 al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~  195 (230)
T 2dvj_A          141 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA  195 (230)
T ss_dssp             CCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCSS
T ss_pred             EeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcCCC
Confidence            58999999999999999999999988889999999 8999999999999988654

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.47  E-value=3.7e-14  Score=79.16  Aligned_cols=51  Identities=31%  Similarity=0.482  Sum_probs=46.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEE-----cCCCCcEEEEe----------CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQ-----VAPTGWSEGEC----------KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~-----~~~~~w~~~~~----------~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|.|.+|++|.|+.     ....+||.|+.          +|+.|+||.+||+.+
T Consensus       147 ALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          147 AQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             ESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             ECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            5899999999999999999999998     67889999995          489999999999865

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.45  E-value=2.5e-13  Score=80.07  Aligned_cols=55  Identities=25%  Similarity=0.550  Sum_probs=50.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.++..++|+|++||+|.|+...+.+||.|+.+|+.|+||.+|++.+...+
T Consensus       179 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~  233 (341)
T 2dyb_A          179 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFP  233 (341)
T ss_dssp             ESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCC
T ss_pred             EEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEcCCCC
Confidence            5799999999999999999999998888999999999999999999999886543

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.43  E-value=8.2e-13  Score=61.10  Aligned_cols=45  Identities=20%  Similarity=0.461  Sum_probs=41.0

Q ss_pred             CCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            9 ANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         9 ~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      ..++|+|.+|+.+.|++....+||.++.+|+.|+||.+|++.+..
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   46 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDS   46 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSC
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEcCC
Confidence            467999999999999988888999999999999999999998754

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.43  E-value=2.5e-13  Score=79.05  Aligned_cols=53  Identities=32%  Similarity=0.535  Sum_probs=48.4

Q ss_pred             CccccC--CCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFD--AQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~--~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.  +...++|+|.+||+|.|+++...+||.|+.+|+.|+||.+||+.+..
T Consensus       242 al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~  296 (304)
T 2eyz_A          242 VIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQ  296 (304)
T ss_dssp             CSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTTSCCCSS
T ss_pred             EeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHHEEECCC
Confidence            579999  56889999999999999988889999999999999999999998754

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.42  E-value=2.3e-13  Score=74.92  Aligned_cols=53  Identities=26%  Similarity=0.584  Sum_probs=49.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|.|.+||+|.|+...+.+||.++.+|+.|+||.+|++.+..
T Consensus        16 al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   68 (193)
T 1ng2_A           16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDS   68 (193)
T ss_dssp             CSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSSC
T ss_pred             EcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCeeeEechheEEeecc
Confidence            68999999999999999999999998888999999999999999999987754

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.41  E-value=9.5e-13  Score=71.39  Aligned_cols=51  Identities=18%  Similarity=0.590  Sum_probs=46.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   52 (72)
                      |+|||.+...++|+|++||.+.|+.. +.+||.++.  .|+.|+||.+|+....
T Consensus        17 alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~   69 (175)
T 4d8k_A           17 ALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKAN   69 (175)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             EccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeeccccccccc
Confidence            57999999999999999999999988 578999996  8999999999999764

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.39  E-value=9.7e-13  Score=79.88  Aligned_cols=53  Identities=21%  Similarity=0.441  Sum_probs=49.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||.+.|+...+.+||.|+..|+.|+||.+||+.+..
T Consensus        35 al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   87 (466)
T 2pz1_A           35 ALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVN   87 (466)
T ss_dssp             ESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSC
T ss_pred             EccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeeeccC
Confidence            57999999999999999999999998889999999999999999999998744

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.38  E-value=1.6e-12  Score=75.72  Aligned_cols=54  Identities=22%  Similarity=0.501  Sum_probs=49.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|+|.+...++|+|.+|++|.|+.+.+.+||.++ .+|+.|+||.+||+.+...
T Consensus       139 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~  193 (304)
T 2eyz_A          139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA  193 (304)
T ss_dssp             ECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEECCCS
T ss_pred             EEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccccCC
Confidence            57999999999999999999999998888999999 7999999999999988654

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.37  E-value=7e-13  Score=72.60  Aligned_cols=52  Identities=29%  Similarity=0.461  Sum_probs=46.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe---CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC---KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+..+++|+|.+||.+.|++..+ +||.|+.   +|+.|+||.+|++.+..
T Consensus        22 Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~   76 (184)
T 3a98_A           22 AIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKEV   76 (184)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEECC
T ss_pred             EeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEecc
Confidence            5799999999999999999999997755 5999996   78999999999998754

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.36  E-value=7.4e-13  Score=63.46  Aligned_cols=47  Identities=21%  Similarity=0.451  Sum_probs=42.3

Q ss_pred             CCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            7 AQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         7 ~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      ++..++|+|++|++|.|+.+.+.+||.++.+|+.|+||.+|++.+..
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   48 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDS   48 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEECCC
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEEcCC
Confidence            45678999999999999988788999999999999999999998754

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.35  E-value=2.3e-12  Score=79.25  Aligned_cols=52  Identities=17%  Similarity=0.455  Sum_probs=48.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   52 (72)
                      |+|||+++..++|+|.+||++.|++..+.+||.++.  +|+.|+||.+||+...
T Consensus        90 alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~  143 (535)
T 2h8h_A           90 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD  143 (535)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             EccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcccc
Confidence            579999999999999999999999888899999997  8999999999999764

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.34  E-value=1.8e-12  Score=78.18  Aligned_cols=52  Identities=17%  Similarity=0.455  Sum_probs=48.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+..+++|+|++||.+.|++..+.+||.++.  +|+.|+||.+|+....
T Consensus         7 al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~   60 (452)
T 1fmk_A            7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD   60 (452)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             ECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccccc
Confidence            579999999999999999999999888889999996  8999999999998764

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=99.33  E-value=3.1e-12  Score=61.68  Aligned_cols=48  Identities=25%  Similarity=0.422  Sum_probs=42.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEEe----CCeEEEecCCCe
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGEC----KGQAGWFPLAYV   48 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~~----~g~~G~~P~~~v   48 (72)
                      ++|+|.+....+|+|.+|+.+.|++..  ++.||.++.    .+++|++|.+|+
T Consensus        22 alydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           22 VLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             CSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             EEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            589999999999999999999999765  378999994    337899999998

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=99.33  E-value=2.4e-12  Score=79.57  Aligned_cols=53  Identities=21%  Similarity=0.317  Sum_probs=48.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..+||+|++||+|.|+.....+||.|+  ..|+.|+||.+||+.+..
T Consensus       447 aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~  501 (526)
T 2de0_X          447 AIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIE  501 (526)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred             EeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEccc
Confidence            58999999999999999999999988889999999  689999999999998644

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.33  E-value=2.7e-12  Score=74.79  Aligned_cols=51  Identities=20%  Similarity=0.382  Sum_probs=47.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..++|+|.+||+|.|++..+.+||.++ .+|+.|+||.+||+.+
T Consensus       152 al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~  203 (308)
T 3qwy_A          152 GTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ  203 (308)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEEC
T ss_pred             EeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEecccccccc
Confidence            57999999999999999999999998888999999 5999999999999944

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.30  E-value=6.3e-12  Score=75.83  Aligned_cols=53  Identities=25%  Similarity=0.501  Sum_probs=47.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc-CCCCcEEEEeC-CeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV-APTGWSEGECK-GQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~-~~~~w~~~~~~-g~~G~~P~~~v~~~~~   53 (72)
                      |+|||.+...++|+|++||.+.|++. .+.+||.++.. |+.|+||.+||++...
T Consensus        16 aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~   70 (450)
T 1k9a_A           16 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   70 (450)
T ss_dssp             ESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             ECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccc
Confidence            57999999999999999999999987 56789999964 9999999999997654

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.28  E-value=3.5e-12  Score=70.92  Aligned_cols=52  Identities=29%  Similarity=0.505  Sum_probs=43.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC-CCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA-PTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|+|++||.+.|+... +.+||.++..|+.|+||.+|+....
T Consensus         5 al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   57 (217)
T 1gri_A            5 AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   57 (217)
T ss_dssp             ECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEECCC
T ss_pred             EeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccCCccceECCccccccc
Confidence            589999999999999999999988665 5789999999999999999998653

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.92  E-value=4.6e-13  Score=77.93  Aligned_cols=53  Identities=30%  Similarity=0.416  Sum_probs=47.1

Q ss_pred             CccccCCCC--CCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQA--NGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~--~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++.  ..+|+|++||+|.|+++...+||.|+.+|+.|+||.+||+.+..
T Consensus       242 alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~  296 (303)
T 2lqn_A          242 AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP  296 (303)
Confidence            578998654  67999999999999988888999999999999999999998753

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.25  E-value=1.6e-11  Score=74.93  Aligned_cols=52  Identities=23%  Similarity=0.467  Sum_probs=47.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC-CCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA-PTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|||.+...++|+|++||.+.|++.. +.+||.++..+..|+||.+|+..+.
T Consensus        48 alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~  100 (495)
T 1opk_A           48 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN  100 (495)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESS
T ss_pred             EeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceeccccccccc
Confidence            579999999999999999999999765 6789999988999999999998764

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.22  E-value=2.3e-11  Score=73.42  Aligned_cols=51  Identities=24%  Similarity=0.485  Sum_probs=46.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~   52 (72)
                      |+|||.++..++|+|++||.+.|++.+ .+||.++  ..|+.|+||.+|+..+.
T Consensus        13 al~~~~~~~~~el~~~~gd~~~v~~~~-~~W~~~~~~~~g~~G~~P~~yv~~~~   65 (454)
T 1qcf_A           13 ALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVD   65 (454)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECC-TTEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             ECcccCCcCCCcCcccCCCEEEEEecC-CCCeEEEECCCCceEEecchhccccc
Confidence            579999999999999999999998874 7899999  68999999999998764

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.84  E-value=1.3e-12  Score=76.08  Aligned_cols=54  Identities=19%  Similarity=0.452  Sum_probs=49.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|+|.++..++|+|.+|++|.|+.+.+.+||.++ .+|+.|+||.+|++.+...
T Consensus       130 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~  184 (303)
T 2lqn_A          130 TLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRS  184 (303)
Confidence            57999999999999999999999988788999999 6899999999999987543

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.17  E-value=2.3e-12  Score=75.05  Aligned_cols=52  Identities=23%  Similarity=0.266  Sum_probs=0.0

Q ss_pred             CccccCCC--CCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQ--ANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~--~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.+.  ..++|+|.+||+|.|+++...+||.|+.+|+.|+||.+||+.+.
T Consensus       252 alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~~~  305 (308)
T 3qwy_A          252 VTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTA  305 (308)
T ss_dssp             ------------------------------------------------------
T ss_pred             cccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEECCeeEEechHHeEEec
Confidence            47888554  45899999999999998877899999999999999999998774

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=99.12  E-value=6e-12  Score=77.05  Aligned_cols=51  Identities=29%  Similarity=0.588  Sum_probs=0.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC-CCCcEEEEeC-CeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA-PTGWSEGECK-GQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~-~~~w~~~~~~-g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|.+|++|.|+... ..+||.|+.. |+.|+||.+||+.+
T Consensus       433 alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             -----------------------------------------------------
T ss_pred             EccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHceeC
Confidence            589999999999999999999988765 4589999976 99999999999865

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.11  E-value=1e-10  Score=58.25  Aligned_cols=51  Identities=12%  Similarity=0.159  Sum_probs=41.9

Q ss_pred             cccc--CCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEcc
Q 042979            2 IHPF--DAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQE   52 (72)
Q Consensus         2 ~~~~--~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~   52 (72)
                      +++|  ...+..+|.|.+|+.+.|+.....+||.++ ..|+.|++|.+|+..+.
T Consensus        45 ~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~~~d   98 (102)
T 1ri9_A           45 TTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLADND   98 (102)
T ss_dssp             CTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSCC--
T ss_pred             eeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhcccc
Confidence            3455  345678999999999999988788999999 69999999999997653

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.09  E-value=2e-10  Score=52.76  Aligned_cols=36  Identities=11%  Similarity=0.303  Sum_probs=33.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC   36 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~   36 (72)
                      |+|+|.++..++|+|.+|+++.|+++.+.+||.++.
T Consensus        26 alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A           26 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             EeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEe
Confidence            579999999999999999999999988889999875

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=99.04  E-value=3.2e-11  Score=70.06  Aligned_cols=51  Identities=16%  Similarity=0.317  Sum_probs=43.4

Q ss_pred             CccccCCCCCC-----ccccCCCCEEEEEEcCCCCcEEEEeC------CeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANG-----ELSLSIDDYVVVCQVAPTGWSEGECK------GQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~-----~l~~~~g~~i~v~~~~~~~w~~~~~~------g~~G~~P~~~v~~~   51 (72)
                      |+|||.+...+     +|+|++||++.|+...+.+||.++..      ++.|+||.+|+.+.
T Consensus         6 Alydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~   67 (295)
T 1kjw_A            6 ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (295)
T ss_dssp             ESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHH
Confidence            57899887666     99999999999999888999999953      37899999998654

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.94  E-value=5.9e-10  Score=70.45  Aligned_cols=56  Identities=21%  Similarity=0.336  Sum_probs=45.5

Q ss_pred             CccccC---CCCCCccccCCCCEEEEEEc-----CCCCcEEEE--eCCeEEEecCCCeEEcccCCC
Q 042979            1 VIHPFD---AQANGELSLSIDDYVVVCQV-----APTGWSEGE--CKGQAGWFPLAYVERQEKAPA   56 (72)
Q Consensus         1 a~~~~~---~~~~~~l~~~~g~~i~v~~~-----~~~~w~~~~--~~g~~G~~P~~~v~~~~~~~~   56 (72)
                      |++||.   +..++.|+|++||+|.+...     ...+||.|+  ++|+.|+||.+||..+.+.+.
T Consensus       578 Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lptl~~  643 (655)
T 3pvl_A          578 ALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPTVTL  643 (655)
T ss_dssp             ESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECCCSSC
T ss_pred             HHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECCCCCC
Confidence            578888   67788999999999988766     357899999  689999999999999876443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.86  E-value=5e-09  Score=58.40  Aligned_cols=52  Identities=13%  Similarity=0.337  Sum_probs=44.8

Q ss_pred             ccccCCCCCCccccCCCCEEEEEEcCCCC---cEEEEeCCeEEEecCCCeEEccc
Q 042979            2 IHPFDAQANGELSLSIDDYVVVCQVAPTG---WSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         2 ~~~~~~~~~~~l~~~~g~~i~v~~~~~~~---w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      +++|.+....++.+..|+.+.++.+.+.+   ||.+...++.|+||.+|++.+..
T Consensus       176 l~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~~  230 (239)
T 1ycs_B          176 LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPR  230 (239)
T ss_dssp             SSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC-
T ss_pred             EeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECCc
Confidence            56888999999999999999988665554   99999999999999999997743

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.83  E-value=3.1e-09  Score=62.73  Aligned_cols=47  Identities=17%  Similarity=0.324  Sum_probs=40.3

Q ss_pred             CccccCCCCCC-------ccccCCCCEEEEEEcCCCCcEEEEe---CCeEEEecCCC
Q 042979            1 VIHPFDAQANG-------ELSLSIDDYVVVCQVAPTGWSEGEC---KGQAGWFPLAY   47 (72)
Q Consensus         1 a~~~~~~~~~~-------~l~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~   47 (72)
                      |+|||.+....       +|+|.+||++.|+...+..||.++.   .|..|+||.+.
T Consensus        43 AlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           43 TNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             ESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             EccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            57899987654       4999999999999988889999995   57889999876

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.80  E-value=7.5e-08  Score=47.07  Aligned_cols=52  Identities=15%  Similarity=0.110  Sum_probs=39.2

Q ss_pred             cCCCCCCccccCCCCEEEEEEcCCC----CcEEEEeCCeEEEecCCCeEEcccCCC
Q 042979            5 FDAQANGELSLSIDDYVVVCQVAPT----GWSEGECKGQAGWFPLAYVERQEKAPA   56 (72)
Q Consensus         5 ~~~~~~~~l~~~~g~~i~v~~~~~~----~w~~~~~~g~~G~~P~~~v~~~~~~~~   56 (72)
                      +.+...-+|.+++|+++.|+++.++    .||.....|..||+|.+|++.+.....
T Consensus        26 ~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~~~~~   81 (92)
T 1ug1_A           26 FNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRS   81 (92)
T ss_dssp             CCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCSS
T ss_pred             cCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcccCCC
Confidence            3344666899999999999865432    444466699999999999999876443

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.78  E-value=3e-09  Score=52.53  Aligned_cols=45  Identities=20%  Similarity=0.331  Sum_probs=38.5

Q ss_pred             CCCCCccccCCCCEEEEEEcCC--CCcEEEE-eCCeEEEecCCCeEEc
Q 042979            7 AQANGELSLSIDDYVVVCQVAP--TGWSEGE-CKGQAGWFPLAYVERQ   51 (72)
Q Consensus         7 ~~~~~~l~~~~g~~i~v~~~~~--~~w~~~~-~~g~~G~~P~~~v~~~   51 (72)
                      ..+..+|.|.+|+.+.|+....  .+||.++ ..|+.|++|.++++.-
T Consensus        38 k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~vd   85 (96)
T 2gtj_A           38 KGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEID   85 (96)
T ss_dssp             ECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEEC
T ss_pred             CCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEEE
Confidence            3467799999999999997655  5799999 6999999999999764

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.60  E-value=3.6e-08  Score=59.24  Aligned_cols=50  Identities=12%  Similarity=0.070  Sum_probs=42.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc---CCCCcEEEEe-CC-----eEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV---APTGWSEGEC-KG-----QAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~---~~~~w~~~~~-~g-----~~G~~P~~~v~~   50 (72)
                      |+|+|.+....+|+|.+||++.|+..   .+.+||.++. ..     ..|++|.+++.+
T Consensus       111 al~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          111 THFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             cccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            47899999889999999999999987   4678999994 22     479999988864

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.60  E-value=4.6e-08  Score=57.25  Aligned_cols=50  Identities=12%  Similarity=0.076  Sum_probs=39.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCC---------cEEEEe-C-----CeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTG---------WSEGEC-K-----GQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~---------w~~~~~-~-----g~~G~~P~~~v~~   50 (72)
                      |+|+|.+..+.+|+|.+||++.|+.....+         ||.++. .     +..|++|.+++.+
T Consensus         9 alfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            9 THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             ECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             EecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            578999999999999999999999765544         999984 2     2679999887653

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.58  E-value=4e-08  Score=62.67  Aligned_cols=50  Identities=16%  Similarity=0.308  Sum_probs=42.3

Q ss_pred             CccccCCCCCCc-----cccCCCCEEEEEEcCCCCcEEEEeC------CeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGE-----LSLSIDDYVVVCQVAPTGWSEGECK------GQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~-----l~~~~g~~i~v~~~~~~~w~~~~~~------g~~G~~P~~~v~~   50 (72)
                      |+|+|++....+     |+|++||++.|+...+.+||.++..      +..|+||.+|+.+
T Consensus       432 Al~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e  492 (721)
T 2xkx_A          432 ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE  492 (721)
T ss_pred             EeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHH
Confidence            578999988777     9999999999998888899999942      3569999988754

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.51  E-value=1.3e-07  Score=57.96  Aligned_cols=50  Identities=12%  Similarity=0.080  Sum_probs=42.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc---CCCCcEEEEe---CC---eEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV---APTGWSEGEC---KG---QAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~---~~~~w~~~~~---~g---~~G~~P~~~v~~   50 (72)
                      ++|+|.+..+.+|+|++||++.|+..   ...+||.++.   .+   ..|+||.+++.+
T Consensus       103 alfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A          103 THFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             cccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            46899999899999999999999987   5678999984   33   689999988864

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=98.46  E-value=2e-07  Score=53.97  Aligned_cols=50  Identities=10%  Similarity=0.055  Sum_probs=40.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~   53 (72)
                      ++|||.+.   ++.+.+|+.+.++......||.++ .+|..|++|.+|+....+
T Consensus       203 al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~ip~p  253 (283)
T 3pe0_A          203 AVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLVPPP  253 (283)
T ss_dssp             ECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEECCSC
T ss_pred             eecCccCC---cccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEeeCCC
Confidence            46788764   799999999999988778899999 688999999999986644

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.40  E-value=2.4e-07  Score=53.91  Aligned_cols=47  Identities=17%  Similarity=0.331  Sum_probs=32.9

Q ss_pred             CccccCCCCCC-----ccccCCCCEEEEEEcCCCCcEEEEe------CCeEEEecCCC
Q 042979            1 VIHPFDAQANG-----ELSLSIDDYVVVCQVAPTGWSEGEC------KGQAGWFPLAY   47 (72)
Q Consensus         1 a~~~~~~~~~~-----~l~~~~g~~i~v~~~~~~~w~~~~~------~g~~G~~P~~~   47 (72)
                      |++||++....     .|.|++||++.|....+.+||.++.      ....|++|+..
T Consensus        10 a~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~   67 (292)
T 3tvt_A           10 ALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKR   67 (292)
T ss_dssp             ECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHH
T ss_pred             EeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChH
Confidence            46788886544     5999999999999998999999983      22479999743

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.35  E-value=5.9e-07  Score=49.28  Aligned_cols=50  Identities=26%  Similarity=0.580  Sum_probs=45.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~   50 (72)
                      ++|+|.++...++.+..|+.+.+......+||.+...+..|++|.+++..
T Consensus        19 al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~   68 (222)
T 3ehr_A           19 ALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   68 (222)
T ss_dssp             ESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHH
T ss_pred             EeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccc
Confidence            47899999999999999999999988888999999999999999877653

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=97.86  E-value=4.3e-08  Score=57.89  Aligned_cols=44  Identities=14%  Similarity=0.195  Sum_probs=33.2

Q ss_pred             CCCcccc--CCCCEEEEEEcCCCCcEEEEeC---CeEEEecCC-CeEEcc
Q 042979            9 ANGELSL--SIDDYVVVCQVAPTGWSEGECK---GQAGWFPLA-YVERQE   52 (72)
Q Consensus         9 ~~~~l~~--~~g~~i~v~~~~~~~w~~~~~~---g~~G~~P~~-~v~~~~   52 (72)
                      ...+|.+  ..||.|.|+...+.+||.|+.+   |+.|+||.+ ||+.+.
T Consensus       283 ~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~~~  332 (341)
T 2dyb_A          283 EDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKD  332 (341)
T ss_dssp             SCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEECC
T ss_pred             CcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEecC
Confidence            3445555  8999999998878899999854   555699998 666553

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=97.85  E-value=1.1e-05  Score=49.36  Aligned_cols=50  Identities=6%  Similarity=-0.086  Sum_probs=41.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~   53 (72)
                      |++||..   .++.+.+|+.+.+.......||.++ ..|..|++|..|+....+
T Consensus       288 alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~ippp  338 (450)
T 3r6n_A          288 ALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPP  338 (450)
T ss_dssp             ESSCEEE---TTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEECCSC
T ss_pred             EeccccC---CeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEecCCC
Confidence            3567763   5889999999999998888999999 578999999999986643

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=96.97  E-value=0.0052  Score=28.64  Aligned_cols=43  Identities=21%  Similarity=0.383  Sum_probs=34.1

Q ss_pred             cccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCCC
Q 042979           13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPA   56 (72)
Q Consensus        13 l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~   56 (72)
                      -.+..|+.+.++... .+|++.+..|..||+...|+......+.
T Consensus        25 ~~l~~G~~v~v~~~~-~~W~kV~~~g~~GwV~~~yl~~~~~~~~   67 (74)
T 2krs_A           25 GTLRNNDKVEIIKEV-DGWYEIRFNGKVGYASKSYITIVNEGSL   67 (74)
T ss_dssp             EEEETTCEEEEEEEE-TTEEEEEETTEEEEECSSSEEESSSSCC
T ss_pred             EEECCCCEEEEEEEe-CCEEEEEECCeEEEEEhHHcCCCCCccc
Confidence            457788999888653 5799999889999999999987655443

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=96.77  E-value=0.0064  Score=28.53  Aligned_cols=40  Identities=23%  Similarity=0.280  Sum_probs=32.8

Q ss_pred             cccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979           13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus        13 l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      -.+..|+.+.++.. ..+|++.+.+|..||+...|+.....
T Consensus        27 ~~l~~G~~v~vl~~-~~~W~kV~~~g~~GwV~~~yl~~~~~   66 (76)
T 2kt8_A           27 GSLSGNTKVTIVGE-EGAFYKIEYKGSHGYVAKEYIKDIKD   66 (76)
T ss_dssp             EEECTTCEEEEEEE-ETTEEEEEETTEEEEEEGGGEEEEEC
T ss_pred             EEECCCCEEEEEEE-eCCEEEEEECCEEEEEEhHHhCcCCC
Confidence            45678999988876 35799999999999999999987644

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=95.68  E-value=0.0044  Score=28.57  Aligned_cols=39  Identities=28%  Similarity=0.469  Sum_probs=30.4

Q ss_pred             cccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcc
Q 042979           13 LSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE   52 (72)
Q Consensus        13 l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   52 (72)
                      -.+.+|+.+.++.. ..+|++.+.+|..||+...++...+
T Consensus        26 ~~l~~G~~v~v~~~-~~~W~~V~~~G~~GwV~~~~l~~~~   64 (70)
T 2kq8_A           26 GALPQGQKVQVISE-NSGWSKINYNGQTGYIGTRYLSKLE   64 (70)
T ss_dssp             CCCCSSSSCCCCEE-ETTEEEEEETTEEEEEETTSCSCCC
T ss_pred             EEECCCCEEEEEEe-cCCEEEEEECCEEEEEEhHHccchh
Confidence            34667888777765 3679999999999999998887553

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=93.43  E-value=0.27  Score=22.82  Aligned_cols=46  Identities=22%  Similarity=0.271  Sum_probs=36.4

Q ss_pred             ccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe------CCeEEEecCCC
Q 042979            2 IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC------KGQAGWFPLAY   47 (72)
Q Consensus         2 ~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~------~g~~G~~P~~~   47 (72)
                      ..||.+...+++++..|+.+.++....-+...+.+      ....||+|-.-
T Consensus        13 ~~dY~A~ke~eI~v~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~v   64 (74)
T 1wfw_A           13 IKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSI   64 (74)
T ss_dssp             CSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGG
T ss_pred             EeeeeeeccceeccccCcEEEEEEecCcceEEEEeecCCCCccccCcccccE
Confidence            46899999999999999999999877777766653      23568988644

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=90.39  E-value=0.19  Score=25.95  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=18.8

Q ss_pred             CccccCCCCEEEEEEcCCC----CcEEEEeCC
Q 042979           11 GELSLSIDDYVVVCQVAPT----GWSEGECKG   38 (72)
Q Consensus        11 ~~l~~~~g~~i~v~~~~~~----~w~~~~~~g   38 (72)
                      ....|..|+.+.+..+.+.    +||.|+...
T Consensus        57 ~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~   88 (128)
T 3h8z_A           57 YNKEITEGDEVEVYSRANEQEPCGWWLARVRM   88 (128)
T ss_dssp             ---CCCTTCEEEEEECC---CCCEEEEEEEEE
T ss_pred             cccCCCCCCEEEEEecCCCCCcCccEEEEEEE
Confidence            3467889999998876544    899999533

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=90.19  E-value=0.58  Score=27.14  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             cccCCCCEEEEEEcCCCCcEEEEe-CCeEEEecCCCeEEc
Q 042979           13 LSLSIDDYVVVCQVAPTGWSEGEC-KGQAGWFPLAYVERQ   51 (72)
Q Consensus        13 l~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~   51 (72)
                      -.+..|+.+.|++++  +|++.+. +|..||++..++...
T Consensus        35 ~~l~~G~~v~Vl~~~--gW~~V~~~dG~~GwV~~~~l~~~   72 (306)
T 3npf_A           35 TQALLGMPVKVLQYN--GWYEIQTPDDYTGWVHRMVITPM   72 (306)
T ss_dssp             EEEETTCEEEEEEES--SEEEEECTTSCEEEEEGGGEEEE
T ss_pred             EEEcCCCEEEEEEEC--CEEEEEcCCCCEEEEEhHHeeec
Confidence            456778999998873  6999986 899999999888754

>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}

Probab=80.55  E-value=3.4  Score=24.12  Aligned_cols=36  Identities=19%  Similarity=0.391  Sum_probs=28.4

Q ss_pred             ccCCCCEEEEEEcCCCCcEEEEe---------CCeEEEecCCCeEE
Q 042979           14 SLSIDDYVVVCQVAPTGWSEGEC---------KGQAGWFPLAYVER   50 (72)
Q Consensus        14 ~~~~g~~i~v~~~~~~~w~~~~~---------~g~~G~~P~~~v~~   50 (72)
                      .+..|+.+.|+++ ..+|.+...         .|..||++...+..
T Consensus        63 qll~Ge~V~Vl~~-~~~W~~V~~~~q~~~~~~dGy~GWV~~~~L~~  107 (311)
T 3h41_A           63 QALLGQEVTVVDK-KGDWVKVLVHGQPTPRNEEGYPGWMPEKQLTY  107 (311)
T ss_dssp             EEETTCEEEEEEE-ETTEEEEEETTCCBTTBSSCEEEEEEGGGEEC
T ss_pred             eecCCCEEEEEEe-eCCEEEEEECCcccccCCCCcEEEEEHHHcCc
Confidence            4456899988876 467999885         78899999887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	72
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	8e-14
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	1e-13
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	1e-13
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	1e-13
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	2e-13
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	4e-13
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	6e-13
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	7e-13
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	8e-13
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	1e-11
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	1e-11
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	2e-11
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	2e-11
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	4e-11
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	5e-11
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	9e-11
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	9e-11
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	1e-10
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	1e-10
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	1e-10
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	1e-10
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	2e-10
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	2e-10
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	3e-10
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	3e-10
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	8e-10
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	1e-09
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	1e-09
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	2e-09
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	2e-09
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	2e-09
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-09
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	4e-09
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-09
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	4e-08
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	4e-08
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	1e-07
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	1e-07
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	2e-07
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	9e-07
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	3e-06
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	5e-06
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	2e-05
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	3e-04
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	3e-04

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (139), Expect = 8e-14
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           ++ F+A    EL     + V V   +   W  G    + G FP  YV 
Sbjct: 6  ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 57.0 bits (138), Expect = 1e-13
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           +  F+ Q +GEL+    D + +       W EG+   + G FP  YV 
Sbjct: 7  ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (138), Expect = 1e-13
 Identities = 20/62 (32%), Positives = 27/62 (43%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
              F      ELS+   D + V +V   GW EG   G+ GWFP  YV   + +  S  +
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSGPS 74

Query: 61 EG 62
           G
Sbjct: 75 SG 76

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (137), Expect = 1e-13
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           +  FD Q +GEL     D++ V   +   W +G C GQ G FP  YV 
Sbjct: 6  ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 54

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.2 bits (136), Expect = 2e-13
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
           ++ +  ++  E+++   D + +       W + E   + G+ P AYV++
Sbjct: 5  ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 54

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (134), Expect = 4e-13
 Identities = 15/51 (29%), Positives = 23/51 (45%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52
          +  ++A    +L     D ++V       W EGE KG+ G FP  +VE   
Sbjct: 11 LFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA 61

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (133), Expect = 6e-13
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           ++ F+A  + EL+    + + V   +   W +GE     G FP  +V 
Sbjct: 7  ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 55

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 7e-13
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPAS 57
           ++P+ +   G+L+ +  + ++V Q     W  G    ++G FP  YV+ ++  P+S
Sbjct: 13 ALYPYSSVEPGDLTFTEGEEILVTQKDG-EWWTGSIGDRSGIFPSNYVKPKDSGPSS 68

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 8e-13
 Identities = 13/66 (19%), Positives = 23/66 (34%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASKIA 60
           I  + A    E+SL   + V V      GW         G+FP  Y+++  +  +    
Sbjct: 19 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQR 78

Query: 61 EGNSSP 66
          +     
Sbjct: 79 QIKRGA 84

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (125), Expect = 1e-11
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYV-VVCQVAPTGWSEGECKGQAGWFPLAYVE 49
            + F A A+ ELS    D + V+ +     W + E  G+ G+ P  Y+E
Sbjct: 5  AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (123), Expect = 1e-11
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVC-QVAPTGWSEGECKGQAGWFPLAYVE 49
           ++ F A  +  LS++  + + V        W E + K   GW P  Y+ 
Sbjct: 5  ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYIT 54

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (123), Expect = 2e-11
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVER 50
           +  F+     +L     D + +       W   E  +G+ G  P+ YVE+
Sbjct: 6  ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 2e-11
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQ----VAPTGWSEGECKGQAGWFPLAYVERQEKAPA 56
           ++ F A+   ELS+S +  + + +       T W   E  G+ G+ P  Y+ + E  P+
Sbjct: 18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPS 77

Query: 57 S 57
          S
Sbjct: 78 S 78

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 4e-11
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPA 56
           ++ + A    ELS S    + V       W +GE  G  G FP  YV+    +  
Sbjct: 39 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSSG 94

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 5e-11
 Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQV---APTGWSEGECKGQAGWFPLAYVE 49
          +  ++ Q + EL +   D + +          W       + G+ P   + 
Sbjct: 10 LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 60

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 9e-11
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE---RQEKAPAS 57
           +  + A+ +  L+ S  D + V +     W  GE  G  GWFP +YV+     E  P+S
Sbjct: 15 ALCSWTAKKDNHLNFSKHDIITVLEQQE-NWWFGEVHGGRGWFPKSYVKIIPGSESGPSS 73

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 9e-11
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVC-QVAPTGWSEGECKGQAGWFPLAYVE 49
           ++   A+ + ELS +              GW EG   G+ G  P  YVE
Sbjct: 15 ALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (118), Expect = 1e-10
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQV--APTGWSEGECKGQAGWFPLAYVE 49
           ++ F  + +G+L     D + + +   +   W  G   G+ G FP  YVE
Sbjct: 6  ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 56

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.8 bits (119), Expect = 1e-10
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-GQAGWFPLAYVERQEKAPASK 58
          ++ F A    +L L      ++ +     W     K G  G+ P  YV  ++     +
Sbjct: 8  MYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSNNLDQ 65

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (118), Expect = 1e-10
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVE 49
            + +DA  + EL+   +D ++  +     W  GE +  G  G FP  YV 
Sbjct: 5  AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (118), Expect = 1e-10
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQA-GWFPLAYVER 50
           +  + AQ   EL+      +   +    GW  G+  G+   WFP  YVE 
Sbjct: 11 ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEE 61

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 2e-10
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQE 52
           I  ++  +  E++LS  D V V + + +GW   + K + GW P +++E  +
Sbjct: 7  AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD 58

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (116), Expect = 2e-10
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQEKAPA 56
           ++ ++++   +LS    + + +       W        GQ G+ P  YV   +   A
Sbjct: 7  ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQA 64

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 3e-10
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-GQAGWFPLAYVERQE 52
           ++ +      +L L   D   + + +   W     K GQ G+ P  YV   E
Sbjct: 13 ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 3e-10
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVE 49
           ++ + A    E+S    D ++  Q    GW  G  +  G+ G  P  YVE
Sbjct: 8  AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 8e-10
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 2  IHPFDAQANGELSLSIDDYVVVCQVAPTGWS-EGECKGQAGWFPLAYVERQE 52
          ++ ++A  + +LS    D +VV + +   W        + G+ P  YV R +
Sbjct: 10 LYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 61

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 1e-09
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE 49
           I  + A    E+SL   + V V      GW         G+FP  Y++
Sbjct: 5  AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 53

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 1e-09
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 1  VIHPFDAQANGELSLSIDDYVVV---CQVAPTGWSEGECKGQAGWFPLAYVERQEKAPA 56
           ++PF +    EL+    + + V    +  P  W     +GQ G  P  YV      PA
Sbjct: 11 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGPA 69

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 2e-09
 Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWS-EGECKGQAGWFPLAYVER 50
           +H ++   +G+L     + + + + +   W  +    GQ G+ P  +V +
Sbjct: 11 ALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (110), Expect = 2e-09
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVER 50
            + F A+ + ELS+  DD + +       W      G +G+ P   ++ 
Sbjct: 6  SKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDI 55

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (109), Expect = 2e-09
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK--GQAGWFPLAYVER 50
           ++ ++A    +LS    +   +   +   W E      G+ G+ P  YV  
Sbjct: 5  ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 3e-09
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYV--VVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAPASK 58
           ++PF+A+ + E+S +  D +      V   GW  G  +G  GWFP  YVE+   +   K
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENEK 69

Query: 59 IAEGNSSPE 67
                +  
Sbjct: 70 AVSPKKALL 78

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 4e-09
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 1  VIHPFDAQANGELSLSIDDYVV-VCQVAPTGWSEGECK-GQAGWFPLAYVERQEKAPA 56
            + F   A  +L     D +  V       W + + K G+ G  P  YV+++E   A
Sbjct: 11 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKA 68

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 5e-09
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC-----KGQAGWFPLAYVERQEKAP 55
          V   + A  + +LSL+    +++ +   +GW +GE      K Q GWFP ++V+     P
Sbjct: 12 VTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK--LLGP 69

Query: 56 ASKIAEGNSS 65
          +S+ A G SS
Sbjct: 70 SSERASGPSS 79

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 42.6 bits (100), Expect = 4e-08
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVE 49
           ++ +      EL+L  D+   +   +   W   +   G  G+ P +Y+ 
Sbjct: 3  ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 52

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (101), Expect = 4e-08
 Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSE---GECKGQAGWFPLAYVE 49
          V++ +  + + E++++  D + +              +  G+ G  P  Y+ 
Sbjct: 4  VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.3 bits (99), Expect = 1e-07
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 15/65 (23%)

Query: 1  VIHPFDAQANGELSLSIDDYVVV-----CQVAPTGWSEG----------ECKGQAGWFPL 45
            H + A    EL L   D V+V      +    GW  G          E +   G FP 
Sbjct: 17 AQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPE 76

Query: 46 AYVER 50
           + ER
Sbjct: 77 NFTER 81

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (98), Expect = 1e-07
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 2  IHPFDAQANGELSLSIDDYV-VVCQVAPTGWSEGECK--GQAGWFPLAYVE 49
          I P        L L+  D V +    A   W EG      + GWFP   V 
Sbjct: 16 IPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (97), Expect = 2e-07
 Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 1  VIHPFDAQ-ANGELSLSIDDYVVV-----CQVAPTGWSEGE-CKGQAGWFPLAYVE 49
           ++ F  +    E++L   D + +          + W +     G  G+ P  Y+E
Sbjct: 10 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 65

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 9e-07
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 17/74 (22%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPT---------------GWSEG--ECKGQAGWF 43
           ++ +  +   ++ L + D + V + +                 GW  G  E  G+ G F
Sbjct: 8  ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 67

Query: 44 PLAYVERQEKAPAS 57
          P  YVE   +   S
Sbjct: 68 PGTYVEYIGRKKIS 81

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.3 bits (89), Expect = 3e-06
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 1  VIHPFDAQAN-GELSLSIDDYVVVC-QVAPTGWSEGECK--GQAGWFPLAYVE 49
           I P  A  N   LS +  D + +       GW  GE       GWFP +Y +
Sbjct: 12 TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 5e-06
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 6/55 (10%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQVAPTGW------SEGECKGQAGWFPLAYVE 49
          VI  + A    E+ +S  + V V  V           +        GW P + + 
Sbjct: 12 VIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILA 66

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 2e-05
 Identities = 10/67 (14%), Positives = 16/67 (23%), Gaps = 6/67 (8%)

Query: 6  DAQANGELSLSIDDYVVVCQVAPTGW------SEGECKGQAGWFPLAYVERQEKAPASKI 59
              +  LS    D + V       W               G+ P      + +    K 
Sbjct: 16 CGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLKA 75

Query: 60 AEGNSSP 66
           +  SS 
Sbjct: 76 KDWGSSS 82

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 3e-04
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 11/70 (15%)

Query: 1  VIHPFDAQANGELSLSIDDYVVV-----------CQVAPTGWSEGECKGQAGWFPLAYVE 49
           +  + A     L++     V V              +  G   G+   + G+FP + V 
Sbjct: 26 ALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVR 85

Query: 50 RQEKAPASKI 59
            +     K+
Sbjct: 86 EDQTLKPGKV 95

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 3e-04
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 1  VIHPFDAQANGELSLSIDDYVVVCQ----VAPTGWSEGECKGQAGWFPLAYVERQEKAPA 56
              F+A  + ++SL   D V V +    +        +     G+   ++++     P 
Sbjct: 22 AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYN--PR 79

Query: 57 SKIAEGNSSPECG 69
             ++ +S P  G
Sbjct: 80 RSHSDASSGPSSG 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.76
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.76
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.76
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.75
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.75
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.73
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.73
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.72
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.72
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.71
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.7
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.7
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.7
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.69
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.69
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.69
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.69
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.68
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.68
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.68
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.68
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.67
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.67
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.67
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.66
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.66
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.64
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.64
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.63
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.63
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.63
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.62
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.6
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.58
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.58
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.57
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.56
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.56
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.56
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.53
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.52
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.51
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.51
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.49
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.36
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	99.12
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	97.34

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.1e-18  Score=78.60  Aligned_cols=51  Identities=25%  Similarity=0.466  Sum_probs=48.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++.+++|+|.+||.+.|++..+.+||.++.+|+.|+||.+|++++
T Consensus         6 Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           6 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEEc
Confidence            589999999999999999999999988889999999999999999999875

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.2e-18  Score=78.32  Aligned_cols=51  Identities=35%  Similarity=0.740  Sum_probs=47.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++.+++|+|++||.+.|+...+.+||.++.+|+.|+||.+|++++
T Consensus         6 Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           6 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEEC
Confidence            589999999999999999999999888889999999999999999999864

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.76  E-value=1.3e-18  Score=77.86  Aligned_cols=51  Identities=18%  Similarity=0.442  Sum_probs=48.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++.+++|+|++|+.+.|+++.+.+||.++.+|+.|+||.+|++.+
T Consensus         5 Al~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           5 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             ECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEEC
Confidence            589999999999999999999999988899999999999999999999864

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.75  E-value=2.3e-18  Score=77.81  Aligned_cols=51  Identities=27%  Similarity=0.538  Sum_probs=48.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++.+++|+|.+|+.|.|++..+.+||.++.+|+.|+||.+|++++
T Consensus         7 Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           7 ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEEEC
Confidence            589999999999999999999999988899999999999999999999865

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.7e-18  Score=79.18  Aligned_cols=51  Identities=29%  Similarity=0.604  Sum_probs=47.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++.+++|+|.+||.|.|++..+.+||.++.+|+.|+||.+||++.
T Consensus        10 Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~   60 (62)
T d1k4us_          10 ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             CCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             ECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEEC
Confidence            689999999999999999999999888899999999999999999999764

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.8e-18  Score=76.28  Aligned_cols=49  Identities=27%  Similarity=0.415  Sum_probs=46.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE   49 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~   49 (72)
                      |+|+|.++.+++|+|.+|+.+.|+++.+.+||.++.+++.|+||.+|++
T Consensus         5 al~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           5 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             ECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             EeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            5799999999999999999999999988999999999999999999985

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=5.4e-18  Score=76.57  Aligned_cols=49  Identities=24%  Similarity=0.518  Sum_probs=46.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVE   49 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~   49 (72)
                      |+|+|.++.+++|+|++|+.+.|++..+.+||.++.+|+.|+||.+||+
T Consensus         7 Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   55 (58)
T d1uj0a_           7 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT   55 (58)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEE
T ss_pred             ECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEe
Confidence            5899999999999999999999998888899999999999999999987

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.2e-18  Score=81.07  Aligned_cols=54  Identities=33%  Similarity=0.665  Sum_probs=50.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|+|.+..+++|+|++||+|.|+++.+.+||.+..+++.|+||.+|++.+...
T Consensus        15 Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i~~~   68 (76)
T d1ujya_          15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSS   68 (76)
T ss_dssp             CCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCHH
T ss_pred             ECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEECCCC
Confidence            689999999999999999999999888889999999999999999999988653

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.4e-18  Score=77.81  Aligned_cols=51  Identities=27%  Similarity=0.589  Sum_probs=48.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++.+++|+|++||.+.|+++.+.+||.++..++.|+||.+|++.+
T Consensus         7 al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           7 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL   57 (58)
T ss_dssp             CSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCS
T ss_pred             ECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEEC
Confidence            689999999999999999999999998899999999999999999999765

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.72  E-value=7.1e-18  Score=74.94  Aligned_cols=50  Identities=18%  Similarity=0.377  Sum_probs=46.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~   50 (72)
                      |+|+|.++.+++|+|++|+.+.|+++.+.+||.++ .+|+.|+||.+|+.+
T Consensus         3 Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           3 ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             ESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             EeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            58999999999999999999999988888999998 688999999999974

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.1e-17  Score=75.37  Aligned_cols=50  Identities=22%  Similarity=0.538  Sum_probs=46.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~   50 (72)
                      |+|+|.++.+++|+|++||+|.|+.+.+.+||.++ .+|+.|+||.+|+++
T Consensus         6 Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             ECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            58999999999999999999999998888999999 578999999999975

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.8e-17  Score=76.14  Aligned_cols=53  Identities=19%  Similarity=0.370  Sum_probs=48.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+....+|+|++|+.+.|+.....+||.++ .+|+.|+||.+|++.+..
T Consensus         7 Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~   60 (67)
T d1gl5a_           7 AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKS   60 (67)
T ss_dssp             ECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTT
T ss_pred             ECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecC
Confidence            58999999999999999999999998888999998 678999999999987644

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.5e-18  Score=84.35  Aligned_cols=53  Identities=28%  Similarity=0.505  Sum_probs=49.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|+++..++|+|++||+|.|+++.+.+||.++.+|+.|+||.+||+.+..
T Consensus        39 Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~~   91 (98)
T d1udla_          39 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTD   91 (98)
T ss_dssp             ESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCC
T ss_pred             EccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHHEEECCC
Confidence            58999999999999999999999988889999999999999999999988754

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.2e-17  Score=83.16  Aligned_cols=53  Identities=25%  Similarity=0.407  Sum_probs=49.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|.+||+|.|++..+.+||.|+.+|+.|+||.+||+.+..
T Consensus        19 alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   71 (118)
T d1ng2a2          19 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ   71 (118)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             ECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEECCC
Confidence            58999999999999999999999998889999999999999999999998743

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-16  Score=76.18  Aligned_cols=53  Identities=28%  Similarity=0.570  Sum_probs=47.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeC-----CeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECK-----GQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+..+++|+|.+||+|.|+++.+.+||.+...     ++.|+||.+||+.+..
T Consensus        12 al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~   69 (80)
T d1ue9a_          12 VTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGP   69 (80)
T ss_dssp             ECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCS
T ss_pred             ECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCC
Confidence            5899999999999999999999999888899999853     4689999999998754

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=3.9e-17  Score=73.74  Aligned_cols=51  Identities=27%  Similarity=0.494  Sum_probs=47.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..++|+|++||.+.|++..+.+||.++.  +|+.|+||.+||+.+
T Consensus         5 Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           5 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            589999999999999999999999998899999984  789999999999875

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=4.7e-17  Score=73.22  Aligned_cols=51  Identities=24%  Similarity=0.479  Sum_probs=45.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCC-CcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPT-GWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~-~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++.+++|+|++|+.+.|+.+... +||.++..++.|+||.+|++.+
T Consensus         5 Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           5 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEES
T ss_pred             ECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEEC
Confidence            58999999999999999999998866554 5778888999999999999875

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.2e-17  Score=76.80  Aligned_cols=54  Identities=24%  Similarity=0.578  Sum_probs=47.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.+..+++|+|++||.|.|++. +.+||.++.+++.|+||.+|++.+...|
T Consensus        13 Al~~y~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~g~~G~vP~~yv~~~~~~p   66 (69)
T d1uhfa_          13 ALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGP   66 (69)
T ss_dssp             CSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCCC
T ss_pred             ECccCCCCCcCCcCCCCCCEEEEEEe-cCCEEEEEECCcEEEEchhhEEECCCCC
Confidence            68999999999999999999998876 4579999999999999999999875433

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.3e-16  Score=77.81  Aligned_cols=53  Identities=15%  Similarity=0.098  Sum_probs=47.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC----CCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA----PTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~----~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|++||+|.|+++.    ..+||.++..|+.|+||.+||+.+..
T Consensus        22 a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~   78 (92)
T d1ug1a_          22 AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNP   78 (92)
T ss_dssp             ESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCC
T ss_pred             EcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCC
Confidence            579999999999999999999999764    35799999999999999999998754

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.3e-17  Score=73.05  Aligned_cols=51  Identities=20%  Similarity=0.447  Sum_probs=46.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++.+++|+|++||.+.|+.+...+||.++  .+|+.|+||.+|++.+
T Consensus         5 Al~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           5 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             ECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            58999999999999999999999988888999988  4789999999999853

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=8.2e-17  Score=72.62  Aligned_cols=51  Identities=25%  Similarity=0.584  Sum_probs=45.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCC--CCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAP--TGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++.+++|+|++|+.+.|++..+  .+||.++.+|+.|+||.+|++.+
T Consensus         6 Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           6 ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            5899999999999999999999987643  47999999999999999999864

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.9e-17  Score=74.47  Aligned_cols=51  Identities=14%  Similarity=0.322  Sum_probs=45.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC---CCCcEEEEeCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA---PTGWSEGECKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~---~~~w~~~~~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..++|+|++||.+.|++..   ..+||.++.+|+.|+||.+|++.+
T Consensus         9 Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           9 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             ESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             EeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeC
Confidence            589999999999999999999998654   347999999999999999999764

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9e-17  Score=76.50  Aligned_cols=55  Identities=27%  Similarity=0.559  Sum_probs=48.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC----CCCcEEEEeCCeEEEecCCCeEEcccCC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA----PTGWSEGECKGQAGWFPLAYVERQEKAP   55 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~----~~~w~~~~~~g~~G~~P~~~v~~~~~~~   55 (72)
                      |+|+|.++..++|+|.+||.|.|+++.    ..+||.++..|+.|+||.+||+.+...|
T Consensus        18 Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~~p   76 (79)
T d1uhca_          18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGP   76 (79)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSSC
T ss_pred             ECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCCCC
Confidence            589999999999999999999998653    3589999999999999999999876543

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1e-16  Score=74.97  Aligned_cols=54  Identities=22%  Similarity=0.423  Sum_probs=47.2

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEE-eCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGE-CKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~-~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|+|.++..++|+|.+||.|.|++..  ..+||.++ .+|+.|+||.+|++.+...
T Consensus        11 Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~~   67 (71)
T d1u5sa1          11 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   67 (71)
T ss_dssp             ESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCS
T ss_pred             ECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCCC
Confidence            589999999999999999999998653  34799998 6899999999999988653

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.3e-17  Score=76.21  Aligned_cols=52  Identities=29%  Similarity=0.593  Sum_probs=47.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|++||+|.|+++ ..+||.++.+|+.|+||.+|++.+..
T Consensus        15 alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yve~i~~   66 (74)
T d1j3ta_          15 ALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPG   66 (74)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCC
T ss_pred             EccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhEEECCC
Confidence            58999999999999999999999987 46899999999999999999998754

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.3e-17  Score=74.03  Aligned_cols=51  Identities=27%  Similarity=0.492  Sum_probs=46.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..++|+|.+||.+.|+...+.+||.++.  .++.|+||.+|++.+
T Consensus         8 Al~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           8 AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             ECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            689999999999999999999999888889999984  789999999999864

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.5e-17  Score=74.51  Aligned_cols=53  Identities=17%  Similarity=0.448  Sum_probs=47.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++.+++|+|++||.+.+++....+||.++.  .|+.|+||.+|++.+..
T Consensus         7 Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s   61 (64)
T d1fmka1           7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (64)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             ECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECcc
Confidence            589999999999999999999999888889999984  68999999999987643

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5e-16  Score=75.81  Aligned_cols=53  Identities=34%  Similarity=0.735  Sum_probs=47.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC--CCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA--PTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|.|++||+|.|+.+.  +.+||.++.+|+.|+||.+||+.+..
T Consensus        10 Alydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~~   64 (93)
T d1uffa_          10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPS   64 (93)
T ss_dssp             ESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCS
T ss_pred             ECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECCC
Confidence            589999999999999999999999654  45789999999999999999998854

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.3e-17  Score=72.56  Aligned_cols=50  Identities=30%  Similarity=0.522  Sum_probs=41.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc-CCCCcEEEEeCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV-APTGWSEGECKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~   50 (72)
                      |+|+|.++..++|+|.+||.+.++.. ...+||.++.+|+.|+||.+|++.
T Consensus         5 Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           5 AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             ECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             EeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEEE
Confidence            58999999999999999999987754 456788899999999999999963

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.3e-16  Score=74.77  Aligned_cols=53  Identities=26%  Similarity=0.444  Sum_probs=46.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC-CCCcEEEEeCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA-PTGWSEGECKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|++||+|.|++.. ..+||.++.+|+.|+||.+|++.+..
T Consensus        15 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~   68 (72)
T d1ugva_          15 ALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             EcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCC
Confidence            589999999999999999999888654 45799999999999999999998754

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.9e-16  Score=72.57  Aligned_cols=53  Identities=23%  Similarity=0.471  Sum_probs=45.9

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc-CCCCcEEEEe-CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV-APTGWSEGEC-KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~-~~~~w~~~~~-~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||.|.|+.. .+.+||.++. .|+.|+||.+||+.+..
T Consensus        11 Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~   65 (71)
T d1k9aa1          11 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   65 (71)
T ss_dssp             ESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             EccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEccc
Confidence            58999999999999999999998865 4557888884 68999999999997754

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=1.9e-16  Score=73.25  Aligned_cols=51  Identities=20%  Similarity=0.410  Sum_probs=43.5

Q ss_pred             CccccCCCCCC-ccccCCCCEEEEEEcCC-----CCcEEEE-eCCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANG-ELSLSIDDYVVVCQVAP-----TGWSEGE-CKGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~-~l~~~~g~~i~v~~~~~-----~~w~~~~-~~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.++..+ +|+|.+|+.|.|+++.+     .+||.++ .+|+.|+||.+|++.+
T Consensus        10 Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1          10 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             ESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             ECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            58999998764 89999999999886532     4799999 5899999999999864

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=6.1e-16  Score=72.76  Aligned_cols=53  Identities=21%  Similarity=0.241  Sum_probs=47.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe------CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC------KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~------~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+..+++|+|.+||+|.|++..+.+||.++.      .|+.|+||.+|++.+..
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~   70 (74)
T d1wfwa_          12 VIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSG   70 (74)
T ss_dssp             CCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCS
T ss_pred             EeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCC
Confidence            689999999999999999999999888889999984      36899999999987654

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.8e-17  Score=76.15  Aligned_cols=52  Identities=21%  Similarity=0.392  Sum_probs=47.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEcc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQE   52 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~   52 (72)
                      |+|+|.++..++|+|++||.+.|+...+.+||.++ .+|+.|+||.+|++.+.
T Consensus        13 Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~   65 (67)
T d1awwa_          13 ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             BSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             ECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECc
Confidence            58999999999999999999999988888999998 68899999999998764

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.5e-16  Score=71.25  Aligned_cols=52  Identities=21%  Similarity=0.328  Sum_probs=46.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||.+.|++.. .+||.+. .+|+.|+||.+|++.+..
T Consensus         6 alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           6 SKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             EccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            579999999999999999999998764 5799988 688999999999998743

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.3e-15  Score=70.07  Aligned_cols=52  Identities=23%  Similarity=0.476  Sum_probs=45.0

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.++..++|+|.+||.+.|++.. .+||.+.  .+|+.|+||.+|++.+..
T Consensus         9 Alydy~~~~~~eLs~~~Gd~i~v~~~~-~~ww~~~~~~~g~~G~vP~~yv~~~~~   62 (65)
T d1qcfa1           9 ALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS   62 (65)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECC-TTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             ECCcCCCCCcCccCCCCCCEEEEEEEC-CCCEEEEEccCCCEEEEchHHeEECcc
Confidence            589999999999999999999998764 5688776  478999999999997754

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.6e-15  Score=70.93  Aligned_cols=53  Identities=28%  Similarity=0.505  Sum_probs=44.5

Q ss_pred             CccccCCC-CCCccccCCCCEEEEEEc-CCCCcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQ-ANGELSLSIDDYVVVCQV-APTGWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~-~~~~l~~~~g~~i~v~~~-~~~~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+. ..++|+|++||+|.|+.. ...+||.++.  .++.|+||.+||+.+..
T Consensus        12 Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_          12 TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             CSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             EeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            68999985 578899999999998854 5567999985  58999999999998753

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.6e-16  Score=74.92  Aligned_cols=53  Identities=25%  Similarity=0.500  Sum_probs=46.1

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC---------------CCCcEEEEe--CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA---------------PTGWSEGEC--KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~---------------~~~w~~~~~--~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++||+|.|+...               ..+||.|+.  .|+.|+||.+||+.+..
T Consensus         8 aly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~   77 (83)
T d1phta_           8 ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   77 (83)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             EcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCC
Confidence            589999999999999999999998532               357999984  78999999999998855

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3e-15  Score=68.19  Aligned_cols=49  Identities=18%  Similarity=0.607  Sum_probs=42.5

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEE--eCCeEEEecCCCeEE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGE--CKGQAGWFPLAYVER   50 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~   50 (72)
                      |+|+|.++..++|+|.+||.|.|++..+ +||.+.  .+|+.|+||.+||+.
T Consensus        11 al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1          11 ALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             ECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            5799999999999999999999998764 577665  478999999999975

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.1e-16  Score=73.85  Aligned_cols=53  Identities=25%  Similarity=0.494  Sum_probs=46.4

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCCCcEEEEe-CCeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPTGWSEGEC-KGQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+..+++|+|.+|+.|.|+++.+.+||.++. .+..|+||.+|++.+..
T Consensus        11 Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~   64 (71)
T d2hspa_          11 ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN   64 (71)
T ss_dssp             CCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSC
T ss_pred             EcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCC
Confidence            689999999999999999999999888889999985 44556999999987754

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.8e-15  Score=74.16  Aligned_cols=54  Identities=26%  Similarity=0.442  Sum_probs=43.8

Q ss_pred             CccccCCCC------CCccccCCCCEEEEEEc-CCCCcEEEE-eCCeEEEecCCCeEEcccC
Q 042979            1 VIHPFDAQA------NGELSLSIDDYVVVCQV-APTGWSEGE-CKGQAGWFPLAYVERQEKA   54 (72)
Q Consensus         1 a~~~~~~~~------~~~l~~~~g~~i~v~~~-~~~~w~~~~-~~g~~G~~P~~~v~~~~~~   54 (72)
                      |+|||.+..      .++|+|++||+|.|+.. +..+||.+. .+|+.|+||.+||+.+...
T Consensus        22 Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~   83 (96)
T d1wiea_          22 ARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             ESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             EeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCc
Confidence            578998753      47899999999998855 445688887 5889999999999987543

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=3.8e-15  Score=66.59  Aligned_cols=49  Identities=18%  Similarity=0.512  Sum_probs=41.6

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcCCC-CcEEEE--eCCeEEEecCCCeE
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVAPT-GWSEGE--CKGQAGWFPLAYVE   49 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~~~-~w~~~~--~~g~~G~~P~~~v~   49 (72)
                      |+|+|.++.+++|+|.+||.|.|++.... +||.+.  .+|+.|+||.+|++
T Consensus         4 alydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyve   55 (56)
T d1zuua1           4 VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   55 (56)
T ss_dssp             ECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEE
Confidence            58999999999999999999998876554 455555  47999999999986

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.6e-14  Score=66.98  Aligned_cols=47  Identities=28%  Similarity=0.427  Sum_probs=39.7

Q ss_pred             cCCCCCCccccCCCCEEEEEEc-CCCCcEEEEe--CCeEEEecCCCeEEc
Q 042979            5 FDAQANGELSLSIDDYVVVCQV-APTGWSEGEC--KGQAGWFPLAYVERQ   51 (72)
Q Consensus         5 ~~~~~~~~l~~~~g~~i~v~~~-~~~~w~~~~~--~g~~G~~P~~~v~~~   51 (72)
                      |.++..++|+|++||+|.|++. .+.+||.|+.  +|+.|+||.+||+..
T Consensus        19 ~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_          19 PPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             CGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            3456788999999999999865 4568999994  799999999999864

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=4.5e-15  Score=71.10  Aligned_cols=51  Identities=31%  Similarity=0.495  Sum_probs=43.7

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEcC-----CCCcEEEEe----------CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQVA-----PTGWSEGEC----------KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~~-----~~~w~~~~~----------~g~~G~~P~~~v~~~   51 (72)
                      |+|+|.+...++|+|++||+|.|+...     .++||.|..          +|+.|+||.+||+.+
T Consensus        17 Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~i   82 (83)
T d1bb9a_          17 AQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV   82 (83)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             EceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEc
Confidence            589999999999999999999998543     357999874          357899999999876

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.8e-15  Score=74.19  Aligned_cols=51  Identities=16%  Similarity=0.327  Sum_probs=43.8

Q ss_pred             CccccCCCC-----CCccccCCCCEEEEEEcCCCCcEEEEe------CCeEEEecCCCeEEc
Q 042979            1 VIHPFDAQA-----NGELSLSIDDYVVVCQVAPTGWSEGEC------KGQAGWFPLAYVERQ   51 (72)
Q Consensus         1 a~~~~~~~~-----~~~l~~~~g~~i~v~~~~~~~w~~~~~------~g~~G~~P~~~v~~~   51 (72)
                      |+|||.++.     ..+|+|++||+|.|+.+.+.+||.++.      +|+.|+||.+|+.+.
T Consensus         6 Alydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~   67 (96)
T d1kjwa1           6 ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (96)
T ss_dssp             ESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeee
Confidence            578999864     458999999999999988899999984      578999999999754

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.2e-14  Score=72.32  Aligned_cols=53  Identities=17%  Similarity=0.266  Sum_probs=45.3

Q ss_pred             CccccCCCCCCccccCCCCEEEEEEc---CCCCcEEEEeC--------CeEEEecCCCeEEccc
Q 042979            1 VIHPFDAQANGELSLSIDDYVVVCQV---APTGWSEGECK--------GQAGWFPLAYVERQEK   53 (72)
Q Consensus         1 a~~~~~~~~~~~l~~~~g~~i~v~~~---~~~~w~~~~~~--------g~~G~~P~~~v~~~~~   53 (72)
                      |+|+|.+...++|+|++|+.|.|+.+   ...+||.|.+.        ++.|+||.+||+++..
T Consensus        26 Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~   89 (106)
T d1i1ja_          26 ALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQT   89 (106)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEE
T ss_pred             EccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEccc
Confidence            58999999999999999999999865   34689999753        4689999999998754

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.49  E-value=7.8e-15  Score=71.71  Aligned_cols=48  Identities=17%  Similarity=0.320  Sum_probs=42.5

Q ss_pred             CccccCCCCCCc-------cccCCCCEEEEEEcCCCCcEEEEe---CCeEEEecCCCe
Q 042979            1 VIHPFDAQANGE-------LSLSIDDYVVVCQVAPTGWSEGEC---KGQAGWFPLAYV   48 (72)
Q Consensus         1 a~~~~~~~~~~~-------l~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v   48 (72)
                      |+|||++...++       |+|.+||+|.|+...+.+||.|+.   +|+.|+||++++
T Consensus        26 AlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          26 TNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             ESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             EeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            579999988777       999999999999998999999996   578899998754

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.8e-13  Score=71.27  Aligned_cols=49  Identities=12%  Similarity=0.260  Sum_probs=42.9

Q ss_pred             CccccCCCCCCc-------cccCCCCEEEEEEcCCCCcEEEEe---CCeEEEecCCCeE
Q 042979            1 VIHPFDAQANGE-------LSLSIDDYVVVCQVAPTGWSEGEC---KGQAGWFPLAYVE   49 (72)
Q Consensus         1 a~~~~~~~~~~~-------l~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~   49 (72)
                      |+|||.+...++       |+|.+||+|.|+...+.+||.|+.   +|+.|+||.+++.
T Consensus        28 a~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~   86 (145)
T d1vyva1          28 TNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRL   86 (145)
T ss_dssp             ESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHH
T ss_pred             EeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhh
Confidence            478999988776       999999999999888889999995   7899999986543

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=1.3e-11  Score=63.56  Aligned_cols=48  Identities=13%  Similarity=0.280  Sum_probs=40.5

Q ss_pred             CccccCCCCCCc-------cccCCCCEEEEEEcCCCCcEEEEe---CCeEEEecCCCe
Q 042979            1 VIHPFDAQANGE-------LSLSIDDYVVVCQVAPTGWSEGEC---KGQAGWFPLAYV   48 (72)
Q Consensus         1 a~~~~~~~~~~~-------l~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v   48 (72)
                      |+|+|.+...+.       |+|.+||+|.|+...+.+||.|+.   .+..|+||..++
T Consensus        28 a~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          28 TNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             ESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             EeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            468888876555       899999999999998999999994   567899998764

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00015  Score=33.22  Aligned_cols=40  Identities=15%  Similarity=0.194  Sum_probs=34.5

Q ss_pred             CCCccccCCCCEEEEEEcCCCCcEEEE-eCCeEEEecCCCe
Q 042979            9 ANGELSLSIDDYVVVCQVAPTGWSEGE-CKGQAGWFPLAYV   48 (72)
Q Consensus         9 ~~~~l~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v   48 (72)
                      +...|.+++|+.+.|++..+.+-|.++ ..|.-|+++..++
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            345899999999999988888888999 6999999987665