Citrus Sinensis ID: 042997

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MATFFGSPTFLSHPITTTHQFSSSQQAPPPPPPPSSSNQPSQPQSPTPSPQLSTASSEQPAPAAKVQQQKRAKPATVESTDWIASSLTRRFGLGAGLAWAGFLAVGVISEQIKTRLEVSQQEASTRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSIAPA
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccccEEEEEEEccccccccccEEEEEEEEEEEccccEEEcccccccccEEEEccccccccccHHcHHHHHcccccccEEEEEEcccccccccccccccccccccccEEEEEEEEEEEccccc
cccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccccEEEEEEEccccccccccEEEEEEEEEEEcccEEEEEccccccccEEEEcccccccccHHHHHHHHHHccccccEEEEEEccHHcccccccccccccccccccEEEEEEEEEEEccccc
matffgsptflshpittthqfsssqqapppppppsssnqpsqpqsptpspqlstasseqpapaakvqqqkrakpatvestDWIASSLTRRFGLGAGLAWAGFLAVGVISEQIKTRLEVSQQEastrnvekeeevvlpngiryyelkvgggatprrgDLVVIDLrgevegsgqvfvdtfggnkkplalvmgsrpygkgmCEGIEYVLRSMKvggkrrviippnlafgangadlgdgvqippfaTLEYIVEVEKVSIAPA
MATFFGSPTFLSHPITTTHQFSSSQQAPPPPPPPSSSNQPSQPQSPTPSPQLSTASSEQPAPAAkvqqqkrakpatvestdwiASSLTRRFGLGAGLAWAGFLAVGVISEQIKTRLEVsqqeastrnvekeeevvlpngiryyelkvgggatprrGDLVVIDLRGEVEGsgqvfvdtfggnkkPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSIAPA
MATFFGSPTFLSHPITTTHQFsssqqapppppppsssnqpsqpqsptpspqlstassEqpapaakvqqqkrakpaTVESTDWIASSLTRRfglgaglawagflavgvISEQIKTRLEVSQQEASTRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSIAPA
*******************************************************************************TDWIASSLTRRFGLGAGLAWAGFLAVGVISEQIKTRL****************EVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV*****
***F**SPTFLSHPI***********************************************************************LTRRFGLGAGLAWAGFLAVGV*******************************GIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSI***
MATFFGSPTFLSHPIT**************************************************************STDWIASSLTRRFGLGAGLAWAGFLAVGVISEQIKTR****************EEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSIAPA
******SPTFLSHPITTT************************************************************STDWIASSLTRRFGLGAGLAWAGFLAVGVISEQIKTRLEVSQQEASTRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSI***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATFFGSPTFLSHPITTTHQFSSSQQAPPPPPPPSSSNQPSQPQSPTPSPQLSTASSEQPAPAAKVQQQKRAKPATVESTDWIASSLTRRFGLGAGLAWAGFLAVGVISEQIKTRLEVSQQEASTRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVSIAPA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query258 2.2.26 [Sep-21-2011]
Q9LDY5247 Peptidyl-prolyl cis-trans yes no 0.732 0.765 0.738 5e-81
Q8LB65234 Peptidyl-prolyl cis-trans no no 0.806 0.888 0.592 6e-69
Q9SR70230 Peptidyl-prolyl cis-trans no no 0.593 0.665 0.305 2e-12
Q54NB6364 FK506-binding protein 4 O yes no 0.422 0.299 0.390 9e-10
Q26486412 46 kDa FK506-binding nucl N/A no 0.449 0.281 0.317 5e-08
Q944B0207 Peptidyl-prolyl cis-trans no no 0.356 0.444 0.362 2e-07
F4J9Q6499 Peptidyl-prolyl cis-trans no no 0.480 0.248 0.300 4e-07
Q9FLB3143 Peptidyl-prolyl cis-trans no no 0.519 0.937 0.286 2e-06
O81864229 Peptidyl-prolyl cis-trans no no 0.333 0.375 0.357 2e-06
Q93ZG9477 Peptidyl-prolyl cis-trans no no 0.403 0.218 0.327 2e-06
>sp|Q9LDY5|FK172_ARATH Peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP17-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  300 bits (769), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 144/195 (73%), Positives = 173/195 (88%), Gaps = 6/195 (3%)

Query: 68  QQKRAKPATVESTDWIASSLTRRFGLGAGLAWAGFLAVGVISEQIKTRLEVSQQEASTRN 127
           QQKR K   VE+TDW+ASSLTRRFG+GAGLAWAGFLA GVISEQIKTR+EVSQ+ A+TR+
Sbjct: 55  QQKRKK--NVETTDWVASSLTRRFGIGAGLAWAGFLAFGVISEQIKTRIEVSQEVANTRD 112

Query: 128 VEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNK----K 183
           VE+E+E+VLPNGIRYY+ +VGGGATPR GDLVVIDL+G+V+G+GQVFVDTFG       K
Sbjct: 113 VEEEKEIVLPNGIRYYDQRVGGGATPRAGDLVVIDLKGQVQGTGQVFVDTFGTKDKKKMK 172

Query: 184 PLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFAT 243
           PLALV+GS+PY KG+CEGI+YVLRSMK GGKRRVI+PP+L FG +GA+L  G+QIPP A+
Sbjct: 173 PLALVVGSKPYSKGLCEGIDYVLRSMKAGGKRRVIVPPSLGFGVDGAELESGLQIPPNAS 232

Query: 244 LEYIVEVEKVSIAPA 258
           LEYIVE+++VSIAPA
Sbjct: 233 LEYIVEIDRVSIAPA 247
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|Q8LB65|FK173_ARATH Peptidyl-prolyl cis-trans isomerase FKBP17-3, chloroplastic OS=Arabidopsis thaliana GN=FKBP17-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SR70|FK164_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-4 PE=1 SV=1 Back     alignment and function description
>sp|Q54NB6|FKBP4_DICDI FK506-binding protein 4 OS=Dictyostelium discoideum GN=fkbp4 PE=1 SV=1 Back     alignment and function description
>sp|Q26486|FKBP4_SPOFR 46 kDa FK506-binding nuclear protein OS=Spodoptera frugiperda GN=FKBP46 PE=2 SV=1 Back     alignment and function description
>sp|Q944B0|FK161_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-1 PE=2 SV=1 Back     alignment and function description
>sp|F4J9Q6|FKB43_ARATH Peptidyl-prolyl cis-trans isomerase FKBP43 OS=Arabidopsis thaliana GN=FKBP43 PE=2 SV=1 Back     alignment and function description
>sp|Q9FLB3|FK153_ARATH Peptidyl-prolyl cis-trans isomerase FKBP15-3 OS=Arabidopsis thaliana GN=FKBP15-3 PE=2 SV=1 Back     alignment and function description
>sp|O81864|FK171_ARATH Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic OS=Arabidopsis thaliana GN=FKBP17-1 PE=2 SV=1 Back     alignment and function description
>sp|Q93ZG9|FKB53_ARATH Peptidyl-prolyl cis-trans isomerase FKBP53 OS=Arabidopsis thaliana GN=FKBP53 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
255583471266 FK506 binding protein, putative [Ricinus 0.996 0.966 0.764 9e-99
224121190258 predicted protein [Populus trichocarpa] 0.980 0.980 0.730 4e-94
147820053257 hypothetical protein VITISV_002168 [Viti 0.976 0.980 0.726 4e-93
449439447252 PREDICTED: peptidyl-prolyl cis-trans iso 0.972 0.996 0.702 3e-92
359491020258 PREDICTED: probable FKBP-type peptidyl-p 0.976 0.976 0.715 2e-91
358248772257 uncharacterized protein LOC100781416 [Gl 0.984 0.988 0.693 2e-88
388494234250 unknown [Lotus japonicus] 0.945 0.976 0.670 3e-86
217073730256 unknown [Medicago truncatula] gi|3885172 0.972 0.980 0.642 3e-85
357521603256 hypothetical protein MTR_8g107010 [Medic 0.972 0.980 0.642 4e-85
356512982259 PREDICTED: probable FKBP-type peptidyl-p 0.980 0.976 0.674 4e-84
>gi|255583471|ref|XP_002532494.1| FK506 binding protein, putative [Ricinus communis] gi|223527793|gb|EEF29893.1| FK506 binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  365 bits (938), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 204/267 (76%), Positives = 223/267 (83%), Gaps = 10/267 (3%)

Query: 1   MATFFGSPTFLSHPITTTHQFSSSQQAPPPPPPPSSSNQPSQPQSPTPSPQLSTASSEQP 60
           MATFFGSPTFLSHP+  T+ FSSS QAPPPPPP   +       S  P  QLST+SS++P
Sbjct: 1   MATFFGSPTFLSHPLARTNYFSSSSQAPPPPPPTPPTPPSQSQSS-VPPQQLSTSSSDRP 59

Query: 61  AP-AAKVQQQKRAKPAT-----VESTDWIASSLTRRFGLGAGLAWAGFLAVGVISEQIKT 114
            P +AKVQ+QK  KP       VESTDWIAS+LTRRFGLGAGLAWAGFLA GVISEQIKT
Sbjct: 60  TPISAKVQEQKPVKPVAASTTKVESTDWIASTLTRRFGLGAGLAWAGFLAFGVISEQIKT 119

Query: 115 RLEVSQQEASTRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVF 174
           RLEV QQEA+TR+VEKE+EVVLPNGIRY EL+VGGGA+PR GDLVVIDL+G VEGSGQVF
Sbjct: 120 RLEVFQQEANTRDVEKEDEVVLPNGIRYIELRVGGGASPRPGDLVVIDLKGRVEGSGQVF 179

Query: 175 VDTFGGN---KKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGAD 231
           VDTFGG+   KKPLALVMGSRPY KGMCEGIEYVLRSMK GGKR+V +P +L FG NGAD
Sbjct: 180 VDTFGGDMNKKKPLALVMGSRPYSKGMCEGIEYVLRSMKAGGKRKVTVPSSLGFGENGAD 239

Query: 232 LGDGVQIPPFATLEYIVEVEKVSIAPA 258
           LG GVQIPPFATLEYIVEVEKVSIAPA
Sbjct: 240 LGSGVQIPPFATLEYIVEVEKVSIAPA 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224121190|ref|XP_002318521.1| predicted protein [Populus trichocarpa] gi|222859194|gb|EEE96741.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147820053|emb|CAN76041.1| hypothetical protein VITISV_002168 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449439447|ref|XP_004137497.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359491020|ref|XP_003634204.1| PREDICTED: probable FKBP-type peptidyl-prolyl cis-trans isomerase 5, chloroplastic-like [Vitis vinifera] gi|297734309|emb|CBI15556.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|358248772|ref|NP_001240193.1| uncharacterized protein LOC100781416 [Glycine max] gi|255638390|gb|ACU19506.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388494234|gb|AFK35183.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|217073730|gb|ACJ85225.1| unknown [Medicago truncatula] gi|388517241|gb|AFK46682.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357521603|ref|XP_003631090.1| hypothetical protein MTR_8g107010 [Medicago truncatula] gi|92870994|gb|ABE80155.1| Peptidylprolyl isomerase, FKBP-type [Medicago truncatula] gi|355525112|gb|AET05566.1| hypothetical protein MTR_8g107010 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356512982|ref|XP_003525193.1| PREDICTED: probable FKBP-type peptidyl-prolyl cis-trans isomerase 5, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
UNIPROTKB|Q53RK7252 Os03g0708500 "Peptidyl-prolyl 0.697 0.714 0.653 7.7e-64
TAIR|locus:2194065247 AT1G18170 "AT1G18170" [Arabido 0.705 0.736 0.666 8.8e-63
TAIR|locus:505006221234 AT1G73655 "AT1G73655" [Arabido 0.674 0.743 0.582 1.2e-51
UNIPROTKB|A8JEK6267 FKB17-2 "Peptidyl-prolyl cis-t 0.686 0.662 0.407 7.9e-30
UNIPROTKB|A8J1E5244 FKB17-1 "Peptidyl-prolyl cis-t 0.418 0.442 0.396 4.9e-14
UNIPROTKB|P73037201 ytfC "Peptidyl-prolyl cis-tran 0.503 0.646 0.361 1e-13
TAIR|locus:2100063230 AT3G10060 "AT3G10060" [Arabido 0.503 0.565 0.306 2.1e-13
UNIPROTKB|Q7NMC5161 glr0841 "Peptidyl-prolyl cis-t 0.399 0.639 0.380 4.4e-13
UNIPROTKB|Q74AS7156 GSU2274 "Peptidyl-prolyl cis-t 0.437 0.724 0.4 5.6e-13
TIGR_CMR|GSU_2274156 GSU_2274 "FKBP-type peptidyl-p 0.437 0.724 0.4 5.6e-13
UNIPROTKB|Q53RK7 Os03g0708500 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 620 (223.3 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 119/182 (65%), Positives = 144/182 (79%)

Query:    78 ESTDWIASSLTRRXXXXXXXXXXXXXXXXXISEQIKTRLEVSQQEASTRNVEKEEEVVLP 137
             +STDW+A+SLTRR                 +SEQ+KTR EV+QQ A+T++VE+E+EVVLP
Sbjct:    72 DSTDWVATSLTRRFGIGAGLAWVGFLAFGVVSEQLKTRFEVAQQLANTKDVEQEQEVVLP 131

Query:   138 NGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKG 197
             NGIRYYE++VGGG  PR GDLVVIDL+G V G G+ FVDTFG  K+PLALVMGSRPY +G
Sbjct:   132 NGIRYYEMRVGGGDVPRPGDLVVIDLKGRVTG-GEAFVDTFGDGKRPLALVMGSRPYTRG 190

Query:   198 MCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGV-QIPPFATLEYIVEVEKVSIA 256
             MCEG+EYVLRSM+ GGKRRV++PP L FG +GAD GD   Q+PP ATLEY+VEV+KVSIA
Sbjct:   191 MCEGVEYVLRSMRAGGKRRVVVPPALGFGDDGADFGDAAAQVPPGATLEYVVEVDKVSIA 250

Query:   257 PA 258
             PA
Sbjct:   251 PA 252
GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS
GO:0005528 "FK506 binding" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0018208 "peptidyl-proline modification" evidence=ISS
TAIR|locus:2194065 AT1G18170 "AT1G18170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006221 AT1G73655 "AT1G73655" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A8JEK6 FKB17-2 "Peptidyl-prolyl cis-trans isomerase" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|A8J1E5 FKB17-1 "Peptidyl-prolyl cis-trans isomerase" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|P73037 ytfC "Peptidyl-prolyl cis-trans isomerase" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TAIR|locus:2100063 AT3G10060 "AT3G10060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7NMC5 glr0841 "Peptidyl-prolyl cis-trans isomerase" [Gloeobacter violaceus PCC 7421 (taxid:251221)] Back     alignment and assigned GO terms
UNIPROTKB|Q74AS7 GSU2274 "Peptidyl-prolyl cis-trans isomerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2274 GSU_2274 "FKBP-type peptidyl-prolyl cis-trans isomerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LDY5FK172_ARATH5, ., 2, ., 1, ., 80.73840.73250.7651yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_XII0405
hypothetical protein (258 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.X.2120.1
RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; (156 aa)
  •     0.416
eugene3.00080515
hypothetical protein (206 aa)
  •     0.412
estExt_Genewise1_v1.C_LG_VII1249
hypothetical protein (113 aa)
  •     0.412

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
pfam0025494 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t 4e-22
COG0545205 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans 2e-19
PRK10902269 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis- 4e-07
PRK11570206 PRK11570, PRK11570, peptidyl-prolyl cis-trans isom 2e-06
COG1047174 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans 5e-06
pfam04652315 pfam04652, DUF605, Vta1 like 3e-04
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 0.001
COG5178 2365 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p 0.001
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 0.001
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.001
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 0.002
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 0.002
PHA03269 566 PHA03269, PHA03269, envelope glycoprotein C; Provi 0.002
pfam12238201 pfam12238, MSA-2c, Merozoite surface antigen 2c 0.002
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase Back     alignment and domain information 
 Score = 86.9 bits (216), Expect = 4e-22
 Identities = 40/102 (39%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 149 GGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYVLRS 208
           G    ++GD V +   G++E  G VF D+     KP    +GS     G  EG    L  
Sbjct: 1   GPEKAKKGDTVTVHYTGKLED-GTVF-DSSKDRGKPFEFTLGSGQVIPGWDEG----LLG 54

Query: 209 MKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEV 250
           MKVG KR++ IPP LA+G  G     G  IPP ATL + VE+
Sbjct: 55  MKVGEKRKLTIPPELAYGEEGL---AGGVIPPNATLVFEVEL 93

Length = 94
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional Back     alignment and domain information
>gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 258
COG0545205 FkpA FKBP-type peptidyl-prolyl cis-trans isomerase 100.0
PRK11570206 peptidyl-prolyl cis-trans isomerase; Provisional 99.97
PRK10902269 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.97
KOG0552226 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.96
KOG0544108 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.95
TIGR03516177 ppisom_GldI peptidyl-prolyl isomerase, gliding mot 99.94
KOG0549188 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.94
PF0025494 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer 99.85
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.66
PRK15095156 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.52
COG1047174 SlpA FKBP-type peptidyl-prolyl cis-trans isomerase 99.29
PRK10737196 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.24
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.02
TIGR00115 408 tig trigger factor. Trigger factor is a ribosome-a 98.85
PRK01490 435 tig trigger factor; Provisional 98.74
COG0544 441 Tig FKBP-type peptidyl-prolyl cis-trans isomerase 98.41
KOG0545 329 consensus Aryl-hydrocarbon receptor-interacting pr 97.63
PF01346124 FKBP_N: Domain amino terminal to FKBP-type peptidy 97.45
KOG0549 188 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.3
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-33  Score=238.77  Aligned_cols=117  Identities=38%  Similarity=0.721  Sum_probs=109.9

Q ss_pred             hccccCCeEEcCCceEEEEEEecCCCCCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCccCCCcccccHHHH
Q 042997          126 RNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRPYGKGMCEGIEYV  205 (258)
Q Consensus       126 ~~~~~~~~~~t~sGl~y~ilk~G~G~~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~~~~~~i~Gleea  205 (258)
                      ++.++..++++++||+|++++.|+|..+..+|.|++||++++.| |++||+||.++ +|+.|.+|      ++|+||.+|
T Consensus        89 ~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~-G~vFDsS~~rg-~p~~f~l~------~vI~Gw~eg  160 (205)
T COG0545          89 KNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLID-GTVFDSSYDRG-QPAEFPLG------GVIPGWDEG  160 (205)
T ss_pred             hhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCC-CCccccccccC-CCceeecC------CeeehHHHH
Confidence            55567788999999999999999999999999999999999998 99999999986 99999996      599999999


Q ss_pred             hcCCccCcEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEEEE
Q 042997          206 LRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVS  254 (258)
Q Consensus       206 L~~Mk~Gek~~v~IPp~laYG~~g~~~~~~~~IPpnstLvf~VeL~~V~  254 (258)
                      |.+|++|++|+++||++||||.+|.    ++.||||++|+|+|||++|+
T Consensus       161 l~~M~vG~k~~l~IP~~laYG~~g~----~g~Ippns~LvFeVeLl~v~  205 (205)
T COG0545         161 LQGMKVGGKRKLTIPPELAYGERGV----PGVIPPNSTLVFEVELLDVK  205 (205)
T ss_pred             HhhCCCCceEEEEeCchhccCcCCC----CCCCCCCCeEEEEEEEEecC
Confidence            9999999999999999999999998    56699999999999999984

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5 Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00115 tig trigger factor Back     alignment and domain information
>PRK01490 tig trigger factor; Provisional Back     alignment and domain information
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ] Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
4ggq_C209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 3e-11
3vaw_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 3e-11
4dz3_A113 Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is 3e-11
3uf8_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 7e-11
2ke0_A117 Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso 8e-11
2y78_A133 Crystal Structure Of Bpss1823, A Mip-Like Chaperone 9e-11
3uqa_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 1e-10
3uqb_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 1e-10
4dz2_A113 Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is 2e-07
4dip_A125 Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran 8e-07
2ppo_A107 Crystal Structure Of E60a Mutant Of Fkbp12 Length = 5e-06
2dg9_A107 Fk506-Binding Protein Mutant Wl59 Complexed With Ra 7e-06
1u79_A129 Crystal Structure Of Atfkbp13 Length = 129 8e-06
2ppp_A107 Crystal Structure Of E60q Mutant Of Fkbp12 Length = 1e-05
1bl4_A107 Fkbp Mutant F36v Complexed With Remodeled Synthetic 1e-05
1bkf_A107 Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX 1e-05
2dg4_A107 Fk506-Binding Protein Mutant Wf59 Complexed With Ra 1e-05
3h9r_B109 Crystal Structure Of The Kinase Domain Of Type I Ac 1e-05
2fap_A107 The Structure Of The Immunophilin-Immunosuppressant 1e-05
1fkb_A107 Atomic Structure Of The Rapamycin Human Immunophili 2e-05
1eym_A107 Fk506 Binding Protein Mutant, Homodimeric Complex L 2e-05
1tco_C107 Ternary Complex Of A Calcineurin A Fragment, Calcin 9e-05
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209 Back     alignment and structure 
Iteration: 1

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 134 VVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRP 193
           V   +G++Y +L  G GA  R G  V +   G +   GQ F D+      P A V+G   
Sbjct: 100 VTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT-DGQKF-DSSKDRNDPFAFVLGGGM 157
Query: 194 YGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKV 253
             KG  EG++     MKVGG RR+ IPP L +GA GA    G  IPP ATL + VE+  V
Sbjct: 158 VIKGWDEGVQ----GMKVGGVRRLTIPPQLGYGARGA----GGVIPPNATLVFEVELLDV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113 Back     alignment and structure
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117 Back     alignment and structure
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133 Back     alignment and structure
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113 Back     alignment and structure
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125 Back     alignment and structure
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107 Back     alignment and structure
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107 Back     alignment and structure
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13 Length = 129 Back     alignment and structure
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107 Back     alignment and structure
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107 Back     alignment and structure
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107 Back     alignment and structure
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107 Back     alignment and structure
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109 Back     alignment and structure
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107 Back     alignment and structure
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107 Back     alignment and structure
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107 Back     alignment and structure
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 2e-21
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 1e-20
1fd9_A213 Protein (macrophage infectivity potentiator prote; 2e-20
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 7e-20
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 8e-20
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 2e-19
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 3e-19
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 4e-19
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 1e-18
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 5e-17
1q1c_A 280 FK506-binding protein 4; rotamase, TPR repeat, nuc 5e-15
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 5e-17
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 1e-16
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 8e-14
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 6e-17
1jvw_A167 Macrophage infectivity potentiator; chagas disease 2e-16
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 2e-16
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 4e-16
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 5e-16
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 1e-15
2ppn_A107 FK506-binding protein 1A; high resolution protein 3e-15
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 3e-15
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 7e-13
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 7e-15
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 1e-14
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 1e-14
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 1e-14
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 2e-14
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 2e-14
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 2e-14
1p5q_A 336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 8e-13
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 2e-06
2kfw_A196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 4e-06
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 6e-06
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 1e-05
1ix5_A151 FKBP; ppiase, isomerase; NMR {Methanothermococcust 1e-04
3pr9_A157 FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB 4e-04
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134 Back     alignment and structure
 Score = 86.1 bits (214), Expect = 2e-21
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 121 QEASTRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGG 180
           Q    R  ++  ++    G+    ++ G G        V++   G +E   + F D+   
Sbjct: 9   QSLYERLSQRMLDISGDRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPF-DSNYF 67

Query: 181 NKKPLALVMGSRPYGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPP 240
            K P  + +G      GM  G+     SM+ G   R +  PN A+G  G        IPP
Sbjct: 68  RKTPRLMKLGEDITLWGMELGLL----SMRRGELARFLFKPNYAYGTLGC----PPLIPP 119

Query: 241 FATLEYIVEVEKVSI 255
             T+  + E+E +  
Sbjct: 120 NTTV--LFEIELLDF 132
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219 Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213 Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180 Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129 Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224 Back     alignment and structure
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133 Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130 Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167 Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129 Back     alignment and structure
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125 Back     alignment and structure
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113 Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135 Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144 Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118 Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128 Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157 Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102 Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135 Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119 Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169 Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196 Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171 Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151 Back     alignment and structure
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151 Back     alignment and structure
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 99.97
1fd9_A213 Protein (macrophage infectivity potentiator prote; 99.97
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 99.97
1jvw_A167 Macrophage infectivity potentiator; chagas disease 99.96
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 99.95
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 99.95
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 99.95
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 99.94
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.94
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.94
2ppn_A107 FK506-binding protein 1A; high resolution protein 99.94
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 99.94
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 99.94
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 99.94
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 99.94
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 99.93
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 99.93
2lkn_A165 AH receptor-interacting protein; FKBP-type domain, 99.93
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 99.93
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 99.93
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 99.93
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 99.92
1q1c_A 280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.89
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 99.89
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.87
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.87
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.86
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.85
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.82
1hxv_A113 Trigger factor; FKBP fold, ppiase, chaperone; NMR 99.71
1p5q_A 336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.69
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 99.65
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 99.63
3prb_A 231 FKBP-type peptidyl-prolyl CIS-trans isomerase; cha 99.62
2kfw_A196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 99.59
3pr9_A157 FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB 99.57
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 99.56
1ix5_A151 FKBP; ppiase, isomerase; NMR {Methanothermococcust 99.54
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 99.51
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.38
1w26_A 432 Trigger factor, TF; chaperone, protein folding, ri 99.35
1t11_A 392 Trigger factor, TF; helix-turn-helix, four-helix-b 99.2
3gty_X 433 Trigger factor, TF; chaperone-client complex, cell 97.64
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Back     alignment and structure
Probab=99.97  E-value=3.5e-31  Score=233.20  Aligned_cols=177  Identities=27%  Similarity=0.465  Sum_probs=142.4

Q ss_pred             hhhhhhccccccccchHHHHHHHhHhhhhhhhHHHHHHHh-----c----ccchHHHHHHHHHHHHHH------------
Q 042997           65 KVQQQKRAKPATVESTDWIASSLTRRFGLGAGLAWAGFLA-----V----GVISEQIKTRLEVSQQEA------------  123 (258)
Q Consensus        65 ~~~~~k~~~~~g~~~~~~i~~~l~rR~~lg~~l~~~~~La-----~----~~~~~~~~~~le~~~~~~------------  123 (258)
                      +.+.||-+|++|+++++++.+.|.....+|+.++...++.     +    ....+++++.+..++++.            
T Consensus        17 ~~~~~~~sY~~G~~~g~~~~~~~~~~~~~g~~~d~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (224)
T 1q6h_A           17 KNDDQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKMEKDA   96 (224)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999987766554444444443333     1    244555554444332211            


Q ss_pred             ----------hhhccccCCeEEcCCceEEEEEEecCCCCCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCcc
Q 042997          124 ----------STRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRP  193 (258)
Q Consensus       124 ----------~~~~~~~~~~~~t~sGl~y~ilk~G~G~~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~  193 (258)
                                .+++.++++++++++||+|+++++|+|..+..||.|+|||++++.| |++||+++.++ .|+.|.+|   
T Consensus        97 ~~~~~~~~~fl~~~~~~~~v~~~~sGl~y~vl~~G~G~~p~~gD~V~V~Y~g~l~d-G~vfdss~~~g-~p~~f~lg---  171 (224)
T 1q6h_A           97 ADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLID-GKEFDNSYTRG-EPLSFRLD---  171 (224)
T ss_dssp             HHHHHHHHHHHHHHHHSTTEEECTTSCEEEEEECCSSCCCCTTCEEEEEEEEEETT-SCEEEEGGGGT-SCEEEEGG---
T ss_pred             HHHHHhHHHHHHHhCcCCCeEECCCceEEEEEecccCccccCCCEEEEEEEEEeCC-CCEEeeccccC-CCEEEEcC---
Confidence                      1234466888999999999999999999999999999999999987 99999999764 79999994   


Q ss_pred             CCCcccccHHHHhcCCccCcEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEEEE
Q 042997          194 YGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVS  254 (258)
Q Consensus       194 ~~~~~i~GleeaL~~Mk~Gek~~v~IPp~laYG~~g~~~~~~~~IPpnstLvf~VeL~~V~  254 (258)
                         .+|+||+++|.+|++|++++|+||++++||+.+.    ++ ||||++|+|+|+|++|+
T Consensus       172 ---~vI~G~eeaL~gMk~Gek~~v~IP~~laYG~~g~----~~-IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          172 ---GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV----PG-IPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             ---GSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCB----TT-BCTTCCEEEEEEEEEEC
T ss_pred             ---CcchhHHHHHcCCCCCCEEEEEECchhhcCcCCC----CC-CCCCCEEEEEEEEEEeC
Confidence               5899999999999999999999999999999987    55 99999999999999985
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Back     alignment and structure
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0 Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Back     alignment and structure
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Back     alignment and structure
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Back     alignment and structure
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A* Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Back     alignment and structure
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens} Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1 Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Back     alignment and structure
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Back     alignment and structure
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Back     alignment and structure
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Back     alignment and structure
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Back     alignment and structure
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 258
d1u79a_125 d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha 7e-17
d1q6ha_210 d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 9e-15
d1yata_113 d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas 1e-14
d1kt1a3115 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M 3e-14
d1r9ha_118 d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd 3e-13
d1q1ca2117 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H 5e-13
d1q1ca1120 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu 9e-13
d1fd9a_204 d.26.1.1 (A:) Macrophage infectivity potentiator p 1e-12
d2ppna1107 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12) 1e-12
d1kt1a2111 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo 3e-12
d1pbka_116 d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 4e-11
d1jvwa_160 d.26.1.1 (A:) Macrophage infectivity potentiator p 3e-09
d1hxva_85 d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl 7e-08
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.6 bits (177), Expect = 7e-17
 Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 7/128 (5%)

Query: 132 EEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGS 191
           E  V P+G+ + +  VG G    +G L+     G++E +G+VF  ++   K      +G 
Sbjct: 2   EFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLE-NGKVFDSSYNRGKPL-TFRIGV 59

Query: 192 RPYGKGMCEGI--EYVLRSMKVGGKRRVIIPPNLAFGANGA-DLGDGVQIPPFATLEYIV 248
               KG  +GI     +  M  GGKR + IPP LA+G  GA   G    IPP + L  + 
Sbjct: 60  GEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVL--LF 117

Query: 249 EVEKVSIA 256
           ++E +  A
Sbjct: 118 DIEYIGKA 125
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210 Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113 Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115 Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118 Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204 Back     information, alignment and structure
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111 Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160 Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
d1q6ha_210 Peptidyl-prolyl cis-trans isomerase FkpA {Escheric 100.0
d1fd9a_204 Macrophage infectivity potentiator protein (MIP) { 100.0
d1jvwa_160 Macrophage infectivity potentiator protein (MIP) { 99.96
d2ppna1107 FK-506 binding protein (FKBP12), an immunophilin { 99.96
d1q1ca1120 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.96
d1yata_113 Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc 99.96
d1r9ha_118 FKB-6, N-terminal domain {Caenorhabditis elegans [ 99.96
d1kt1a2111 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.96
d1u79a_125 FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 99.95
d1pbka_116 FKBP25 {Human (Homo sapiens) [TaxId: 9606]} 99.94
d1kt1a3115 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.92
d1q1ca2117 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.9
d1hxva_85 Trigger factor PPIase domain {Mycoplasma genitaliu 99.55
d1ix5a_151 Archaeal FKBP {Archaeon Methanococcus thermolithot 99.47
d1l1pa_106 Trigger factor PPIase domain {Escherichia coli [Ta 98.96
d1t11a3113 Trigger factor PPIase domain {Vibrio cholerae [Tax 98.86
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-35  Score=253.49  Aligned_cols=177  Identities=27%  Similarity=0.471  Sum_probs=143.5

Q ss_pred             hhhhhhccccccccchHHHHHHHhHhhhhhhhHHHHHHHh-----c----ccchHHHHHHHHHHHH--------------
Q 042997           65 KVQQQKRAKPATVESTDWIASSLTRRFGLGAGLAWAGFLA-----V----GVISEQIKTRLEVSQQ--------------  121 (258)
Q Consensus        65 ~~~~~k~~~~~g~~~~~~i~~~l~rR~~lg~~l~~~~~La-----~----~~~~~~~~~~le~~~~--------------  121 (258)
                      +.+.||-+|++|+++++.+...+..+...+..++...+++     +    ....++.++.+..+++              
T Consensus         3 ~td~~k~SYaiG~~iG~~l~~~~~~~~~~g~~ld~~~~~~Gl~Dal~gk~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~   82 (210)
T d1q6ha_           3 KNDDQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKMEKDA   82 (210)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhhccccccCcCHHHHHHHHHHHHcCCCcCchhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            4567899999999999999998888765555544444333     1    2233333332222111              


Q ss_pred             --------HHhhhccccCCeEEcCCceEEEEEEecCCCCCCCCCEEEEEEEEEEecCCeEEEeccCCCCcceEEEcCCcc
Q 042997          122 --------EASTRNVEKEEEVVLPNGIRYYELKVGGGATPRRGDLVVIDLRGEVEGSGQVFVDTFGGNKKPLALVMGSRP  193 (258)
Q Consensus       122 --------~~~~~~~~~~~~~~t~sGl~y~ilk~G~G~~p~~GD~V~v~Y~~~~~d~G~vfdsS~~~~~~p~~f~lG~g~  193 (258)
                              +..+++.++++++++++||+|+++++|+|+.|..||.|+|||++++.| |++||+|+.++ .|+.|.+|   
T Consensus        83 ~~~~~~~~~~l~~~~~~~~v~~~~sGl~y~v~~~G~G~~p~~gd~v~v~y~g~l~d-G~~fd~s~~~~-~p~~~~~~---  157 (210)
T d1q6ha_          83 ADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLID-GKEFDNSYTRG-EPLSFRLD---  157 (210)
T ss_dssp             HHHHHHHHHHHHHHHHSTTEEECTTSCEEEEEECCSSCCCCTTCEEEEEEEEEETT-SCEEEEGGGGT-SCEEEEGG---
T ss_pred             HHhhhhHHHHHHhhcccCceEEccCceEEEEeeCCCCCCCCCCceEEEEEEEEEcC-CCEEeecccCC-CcceeccC---
Confidence                    112345567789999999999999999999999999999999999998 99999999875 89999995   


Q ss_pred             CCCcccccHHHHhcCCccCcEEEEEeCCCCCCCCCCCCCCCCCCCCCCCeEEEEEEEEEEE
Q 042997          194 YGKGMCEGIEYVLRSMKVGGKRRVIIPPNLAFGANGADLGDGVQIPPFATLEYIVEVEKVS  254 (258)
Q Consensus       194 ~~~~~i~GleeaL~~Mk~Gek~~v~IPp~laYG~~g~~~~~~~~IPpnstLvf~VeL~~V~  254 (258)
                         .+|+||++||.+|++|++++|+|||+||||++|.    + .||||++|+|+|||++|+
T Consensus       158 ---~vi~g~~e~l~~m~~G~k~~~~iP~~laYG~~g~----~-~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         158 ---GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV----P-GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             ---GSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCB----T-TBCTTCCEEEEEEEEEEC
T ss_pred             ---ccchhHHHHHhhccCCCEEEEEECHHHCcCCCCC----C-CCCcCCcEEEEEEEEEEC
Confidence               4899999999999999999999999999999997    4 499999999999999985
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Back     information, alignment and structure
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Back     information, alignment and structure
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure