Citrus Sinensis ID: 043013

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MKTKVEEKSVKANKTVVGSDQKGEGGQAQQVKPYPNLCGSKQEATTLPADSGKPCSTGSKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKHMARSNESKKNDEAVSLTTSTTIVTPLEPTEKVEDEDVVTEESNEETVDCVIENAEDEEVVVYRGRQSGPHAADSLLC
Secondary Structure (PSIPRED)
cccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccccHHHHHHccccccccccccccccccEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcccccEcccccccccccccccccccccccHEHHcccccccccccccccccccccccEHEEEEEcccHHHHHHHHcccccHHHHHHHHHHHHcccccccHcccccccEEcccEEEccccccccEcccccEEEcccccccHcEEEccccccEEEEEEccccccccHcHccc
Coil and Loop (DISEMBL)
MKTKVEEKSVKANktvvgsdqkgeggqaqqvkpypnlcgskqeattlpadsgkpcstgskkpmhwscalcqvsstskrnldehlrgkkhkakeEGLEREKKHMARsneskkndeaVSLTTSttivtpleptekvededvvteesneeTVDCVIENAEDEEVVVYrgrqsgphaadsllc
Flexible Loop (DISEMBL)
mktkveeksvkanktvvgsdqkgeggqaqqvkpyPNLCGSKQEATTLPADSGKPCSTGSKKPMHWSCALCQVSstskrnldehlrgkkhkakeeglerekkhmarsneskkndeavslttsttivtpleptekvededvvteesneetvdcvienaedeevVVYRGrqsgphaadsllc
Low Complexity Region (SEG)
MKTKVEEKSVKANKTVVGSDQKGEGGQAQQVKPYPNLCGSKQEATTLPADSGKPCSTGSKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKHMARSNESKKNDEAVSLTTSTTIVTPLeptekvededvvteesneetvdCVIENAEDEEVVVYRGRQSGPHAADSLLC
Disordered region (IsUnstruct)
****************************************************************WSCALCQ******************************************************************************DCVIEN*****VVVY***************
Disordered Region (DISOPRED)
****************************************************************WSCALCQVSSTSKRNLDEHLRG*****************************************************************************************SLLC
Disordered Region (DISEMBL)
************NKTVVG***********QVKPYPNLCGSKQEATTLPADSGKPCSTGSKKPMHWSCALCQVSST********************************************TSTTIVTPLEPT*****************VDCVIENAEDEEVVVYRGRQS**********
Disordered Region (DISPRO)
**TKVEEKSVKANKTVVG****************PNLCGSKQ********************MHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKHM**********EAVSLTTSTTIVTPLEPTEKVEDEDVVTEESNEETVDCVIENAEDEEVVVYRGR************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTKVEEKSVKANKTVVGSDQKGEGGQAQQVKPYPNLCGSKQEATTLPADSGKPCSTGSKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKHMARSNESKKNDEAVSLTTSTTIVTPLEPTEKVEDEDVVTEESNEETVDCVIENAEDEEVVVYRGRQSGPHAADSLLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
224091795	291	predicted protein [Populus trichocarpa]	0.692	0.426	0.458	3e-15
255577041	423	hypothetical protein RCOM_0623850 [Ricin	0.502	0.212	0.484	5e-11
357480033	556	hypothetical protein MTR_4g130690 [Medic	0.497	0.160	0.437	1e-09
218202164	341	hypothetical protein OsI_31404 [Oryza sa	0.329	0.173	0.457	1e-06
125605735	341	hypothetical protein OsJ_29403 [Oryza sa	0.329	0.173	0.457	1e-06
115479223	328	Os09g0421700 [Oryza sativa Japonica Grou	0.329	0.179	0.457	2e-06
449454103	418	PREDICTED: uncharacterized protein LOC10	0.385	0.165	0.402	6e-05
308080486	321	uncharacterized protein LOC100502196 [Ze	0.201	0.112	0.631	6e-05
226500844	323	uncharacterized protein LOC100277679 [Ze	0.201	0.111	0.631	6e-05
125598060	489	hypothetical protein OsJ_22184 [Oryza sa	0.234	0.085	0.551	9e-05

>gi|224091795|ref|XP_002309354.1| predicted protein [Populus trichocarpa] gi|222855330|gb|EEE92877.1| predicted protein [Populus trichocarpa]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 7/131 (5%)

Query: 32  KPYPNLCGSKQEATTLPADS-GK-PCSTGSKKPMH-WSCALCQVSSTSKRNLDEHLRGKK 88
           KP PNLCG+K++A T  A+S G+ P +   KKP   WSCALCQVS+TS+R L+EHL+G++
Sbjct: 4   KPDPNLCGAKRKAVTPAAESVGELPFAGIKKKPKEEWSCALCQVSATSERGLNEHLQGRR 63

Query: 89  HKAKEEGLEREKKHMARSNESKKNDEAVSLTTSTTIVTP-LEPTEKVEDEDVVTEESNEE 147
           HKAKE GL  +K  MAR+       +  + T   TI T  LE   K+EDE +   +S+  
Sbjct: 64  HKAKEAGLRAQK--MARNPNKASLPKETTKTAKVTIPTAGLEMEAKIEDESLQLNKSDNF 121

Query: 148 TVDCVIENAED 158
           + +  IEN E+
Sbjct: 122 S-NKKIENKEE 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577041|ref|XP_002529405.1| hypothetical protein RCOM_0623850 [Ricinus communis] gi|223531153|gb|EEF33001.1| hypothetical protein RCOM_0623850 [Ricinus communis]

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 59/99 (59%), Gaps = 9/99 (9%)

Query: 32  KPYPNLCGSKQEATTLPADSGK--PCSTGSKKPMH-WSCALCQVSSTSKRNLDEHLRGKK 88
           KP PNL G K++A T P       PC+   KKP   WSCALC+VS+TS++ L+ HLRGKK
Sbjct: 173 KPDPNLFGVKRKAATPPVGGTHELPCTVLKKKPKEEWSCALCRVSATSEQGLNNHLRGKK 232

Query: 89  HKAKEEGLEREKKHMARSNES----KKNDEAVSLTTSTT 123
           HKAKE  L   K  MA++  S    KK+     LT ST 
Sbjct: 233 HKAKEARLRANK--MAKTPCSRPLPKKSLRQTKLTVSTA 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480033|ref|XP_003610302.1| hypothetical protein MTR_4g130690 [Medicago truncatula] gi|355511357|gb|AES92499.1| hypothetical protein MTR_4g130690 [Medicago truncatula]

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 7/96 (7%)

Query: 32  KPYPNLCGSKQEATTLPADSGKPCSTGSKKPM--HWSCALCQVSSTSKRNLDEHLRGKKH 89
           KP P+L G+K++A TL A +  P + G KK     WSC LCQ+ +TS+  L+ HL GKKH
Sbjct: 221 KPDPDLYGAKRKALTLDAPNDDPYAIGMKKKPKEEWSCELCQIKATSESGLNAHLNGKKH 280

Query: 90  KAKEEGLEREKKHMARSNESKKNDEAVSLTTSTTIV 125
           KAKE G +R+    +R  +S+K  E +   T T +V
Sbjct: 281 KAKEAGQKRKIDKCSR--KSQKTAEKI---TDTVVV 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218202164|gb|EEC84591.1| hypothetical protein OsI_31404 [Oryza sativa Indica Group]

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 48  PADSGKPCSTGSKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKHMARS 106
           P++  +P    S  P  WSCA+CQV +TS+RNL +H  G+KH++K   LE+  K MAR+
Sbjct: 94  PSEKSEPAVQKSMPPSAWSCAVCQVRTTSERNLRDHCGGQKHQSKVAALEKTTKAMART 152

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125605735|gb|EAZ44771.1| hypothetical protein OsJ_29403 [Oryza sativa Japonica Group]

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 48  PADSGKPCSTGSKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKHMARS 106
           P++  +P    S  P  WSCA+CQV +TS+RNL +H  G+KH++K   LE+  K MAR+
Sbjct: 94  PSEKSEPAVQKSMPPSAWSCAVCQVRTTSERNLRDHCGGQKHQSKVAALEKTTKAMART 152

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115479223|ref|NP_001063205.1| Os09g0421700 [Oryza sativa Japonica Group] gi|50726117|dbj|BAD33638.1| unknown protein [Oryza sativa Japonica Group] gi|113631438|dbj|BAF25119.1| Os09g0421700 [Oryza sativa Japonica Group] gi|215766207|dbj|BAG98435.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 48  PADSGKPCSTGSKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKKHMARS 106
           P++  +P    S  P  WSCA+CQV +TS+RNL +H  G+KH++K   LE+  K MAR+
Sbjct: 81  PSEKSEPAVQKSMPPSAWSCAVCQVRTTSERNLRDHCGGQKHQSKVAALEKTTKAMART 139

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454103|ref|XP_004144795.1| PREDICTED: uncharacterized protein LOC101215299 [Cucumis sativus]

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 32  KPYPNLCGSKQEATTLPADSGK---PCSTGSKKPMHWSCALCQVSSTSKRNLDEHLRGKK 88
           KP PN    +++A T  + S K   P          WSCALCQV++  +++ ++HLRGKK
Sbjct: 217 KPVPNAFREERKAETTTSPSIKHILPSLVKKTSKDEWSCALCQVTTAEEKSFNDHLRGKK 276

Query: 89  HKAKEEGLEREK 100
           H+ KE  L  EK
Sbjct: 277 HRRKEANLRAEK 288

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308080486|ref|NP_001183602.1| uncharacterized protein LOC100502196 [Zea mays] gi|238013370|gb|ACR37720.1| unknown [Zea mays] gi|413943510|gb|AFW76159.1| hypothetical protein ZEAMMB73_364823 [Zea mays]

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 31/38 (81%), Gaps = 2/38 (5%)

Query: 57  TGSKKPM--HWSCALCQVSSTSKRNLDEHLRGKKHKAK 92
           TG + P    WSCA+CQVS+TS+ NL+EHL+GKKH+AK
Sbjct: 189 TGVQDPSSGQWSCAICQVSATSEANLNEHLQGKKHRAK 226

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226500844|ref|NP_001144654.1| uncharacterized protein LOC100277679 [Zea mays] gi|195645234|gb|ACG42085.1| hypothetical protein [Zea mays]

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 31/38 (81%), Gaps = 2/38 (5%)

Query: 57  TGSKKPM--HWSCALCQVSSTSKRNLDEHLRGKKHKAK 92
           TG + P    WSCA+CQVS+TS+ NL+EHL+GKKH+AK
Sbjct: 190 TGVQDPSSGQWSCAICQVSATSEANLNEHLQGKKHRAK 227

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125598060|gb|EAZ37840.1| hypothetical protein OsJ_22184 [Oryza sativa Japonica Group]

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 31/49 (63%), Gaps = 7/49 (14%)

Query: 44  ATTLPADSGKPCSTGSKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAK 92
           ATT P    KP          WSCALCQVS+TS+  L+EHL GK+HKAK
Sbjct: 239 ATTRPGKLQKPAQD-------WSCALCQVSATSEGALNEHLEGKRHKAK 280

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VI001245 hypothetical protein (291 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	1e-05

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 65 WSCALCQVSSTSKRNLDEHLRGKKH 89
          + C LC V+ TS+  L  HLRGKKH
Sbjct: 1  FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	98.98
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.62
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.46
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.13
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	96.3
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	96.03
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	95.86
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.57
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	95.12
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	95.11
PLN02748	468	tRNA dimethylallyltransferase	94.95
KOG4727	193	consensus U1-like Zn-finger protein [General funct	94.34
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	94.18
smart00355	26	ZnF_C2H2 zinc finger.	93.15
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	92.87
PTZ00448	373	hypothetical protein; Provisional	92.82
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	92.82
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	92.75
KOG3032	264	consensus Uncharacterized conserved protein [Funct	92.69
KOG4722	672	consensus Zn-finger protein [General function pred	88.44
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	88.33
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	85.8
PF04988	165	AKAP95: A-kinase anchoring protein 95 (AKAP95); In	85.76
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	83.25
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	83.15
KOG2837	309	consensus Protein containing a U1-type Zn-finger a	82.47

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=98.98  E-value=6.6e-11  Score=107.85  Aligned_cols=69  Identities=20%  Similarity=0.269  Sum_probs=60.9

Q ss_pred             eeccCCCCCCCcccccCCCCCCCCCCcCCC------------cCCCeeeeccccccccchHHHHHhhcccchHHHHHHhH
Q 043013           30 QVKPYPNLCGSKQEATTLPADSGKPCSTGS------------KKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE   97 (179)
Q Consensus        30 l~Kpd~n~ygvKRKaktlp~~s~Ev~~~k~------------K~~~eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL~   97 (179)
                      =+|++||+||+|||++.+||++.|.|..++            ...+.-.|.+|...+.|+.+..+||.+++|+.++..+.
T Consensus        22 HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~  101 (390)
T KOG2785|consen   22 HYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQ  101 (390)
T ss_pred             HhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChhhHHHHHHHhhcchhhhhhh
Confidence            379999999999999999999988886665            34457899999999999999999999999999988755


Q ss_pred             H
Q 043013           98 R   98 (179)
Q Consensus        98 a   98 (179)
                      .
T Consensus       102 r  102 (390)
T KOG2785|consen  102 R  102 (390)
T ss_pred             c
Confidence            3

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.62  E-value=1.6e-08  Score=57.55  Aligned_cols=25  Identities=44%  Similarity=0.861  Sum_probs=24.6

Q ss_pred             eeeccccccccchHHHHHhhcccch
Q 043013           65 WSCALCQVSSTSKRNLDEHLRGKKH   89 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL~GKKH   89 (179)
                      |.|.+|+++|+|+..|..|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            8999999999999999999999998

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.46  E-value=9.6e-08  Score=57.51  Aligned_cols=32  Identities=38%  Similarity=0.733  Sum_probs=29.9

Q ss_pred             eeeeccccccccchHHHHHhhcccchHHHHHH
Q 043013           64 HWSCALCQVSSTSKRNLDEHLRGKKHKAKEEG   95 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aa   95 (179)
                      .|.|.+|++.|+++..|.+|+.|++|+.+++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            58999999999999999999999999998764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.13  E-value=9.4e-07  Score=51.83  Aligned_cols=26  Identities=35%  Similarity=0.735  Sum_probs=25.3

Q ss_pred             eeeccccccccchHHHHHhhcccchH
Q 043013           65 WSCALCQVSSTSKRNLDEHLRGKKHK   90 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL~GKKHK   90 (179)
                      |.|.+|++.|.++..|.+|+.|++||
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            78999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.30  E-value=0.0033  Score=40.60  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             Ceeeecccccccc--chHHHHHhhcccchHHHHHH
Q 043013           63 MHWSCALCQVSST--SKRNLDEHLRGKKHKAKEEG   95 (179)
Q Consensus        63 ~eWsCalCqvt~T--SE~~L~nHL~GKKHKAk~aa   95 (179)
                      +.++|..|++-++  +-..-.+|++|.+|+.+++.
T Consensus         2 ~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    2 PRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             -S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             cCeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            5689999999994  34566899999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.0041  Score=59.18  Aligned_cols=37  Identities=32%  Similarity=0.540  Sum_probs=34.0

Q ss_pred             eeeccccccccchHHHHHhhcccchHHHHHHhHHHhh
Q 043013           65 WSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLEREKK  101 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL~ak~K  101 (179)
                      -.|-+|.++|-||.+|.||-++|+|+-+++.|+.+-.
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqemE  329 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQEME  329 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999876443

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=95.86  E-value=0.0058  Score=32.82  Aligned_cols=21  Identities=38%  Similarity=0.816  Sum_probs=17.9

Q ss_pred             eeeccccccccchHHHHHhhc
Q 043013           65 WSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL~   85 (179)
                      |.|.+|+.+|.+..+|..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            789999999999999999985

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.57  E-value=0.0047  Score=42.52  Aligned_cols=35  Identities=31%  Similarity=0.636  Sum_probs=27.1

Q ss_pred             cCCCeeeeccccccccchHHHHHhhcccchHHHHH
Q 043013           60 KKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEE   94 (179)
Q Consensus        60 K~~~eWsCalCqvt~TSE~~L~nHL~GKKHKAk~a   94 (179)
                      +....|.|.+|+..|.|..+|..|++.+.|+....
T Consensus        46 ~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   46 KVKESFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             ---SSEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             ccCCCCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            33347999999999999999999999999988644

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.12  E-value=0.014  Score=32.20  Aligned_cols=22  Identities=41%  Similarity=0.831  Sum_probs=20.2

Q ss_pred             eeeccccccccchHHHHHhhcc
Q 043013           65 WSCALCQVSSTSKRNLDEHLRG   86 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL~G   86 (179)
                      |.|..|...|.+...|..|++-
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6799999999999999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=95.11  E-value=0.013  Score=50.89  Aligned_cols=32  Identities=25%  Similarity=0.526  Sum_probs=30.3

Q ss_pred             eeeeccccccccchHHHHHhhcccchHHHHHH
Q 043013           64 HWSCALCQVSSTSKRNLDEHLRGKKHKAKEEG   95 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aa   95 (179)
                      ..-|-+|...--+|..+..|++||||+.|++.
T Consensus        53 ~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlar   84 (222)
T KOG0227|consen   53 KYECKLCLTLHNNEGSYLAHTQGKKHQTNLAR   84 (222)
T ss_pred             ceeehhhhhhhcchhhhhhhhccchhhHHHHH
Confidence            78999999999999999999999999999874

>PLN02748 tRNA dimethylallyltransferase

Probab=94.95  E-value=0.019  Score=53.81  Aligned_cols=36  Identities=17%  Similarity=0.520  Sum_probs=31.1

Q ss_pred             eeeeccccc-cccchHHHHHhhcccchHHHHHHhHHH
Q 043013           64 HWSCALCQV-SSTSKRNLDEHLRGKKHKAKEEGLERE   99 (179)
Q Consensus        64 eWsCalCqv-t~TSE~~L~nHL~GKKHKAk~aaL~ak   99 (179)
                      ...|.+|+. +...+..++.|+.||+||-++..++.+
T Consensus       418 ~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~  454 (468)
T PLN02748        418 QYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQK  454 (468)
T ss_pred             cccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhh
Confidence            347999997 899999999999999999998866543

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=94.34  E-value=0.036  Score=47.40  Aligned_cols=37  Identities=22%  Similarity=0.407  Sum_probs=32.4

Q ss_pred             cCCCeeeeccccccccchHHHHHhhcccchHHHHHHh
Q 043013           60 KKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGL   96 (179)
Q Consensus        60 K~~~eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL   96 (179)
                      ....-+.|.+|.-.+---.+|..||+||+|+-|+..+
T Consensus        71 sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   71 SQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS  107 (193)
T ss_pred             cccCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence            3445789999999999999999999999999998754

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=94.18  E-value=0.044  Score=47.50  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=31.4

Q ss_pred             CeeeeccccccccchHHHHHhhcccchHHHHHHh
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGL   96 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL   96 (179)
                      -...|-+|..+--+|..+..|++||||+.|+.+-
T Consensus        52 Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr   85 (222)
T COG5246          52 GKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR   85 (222)
T ss_pred             CcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence            3889999999999999999999999999998754

>smart00355 ZnF_C2H2 zinc finger

Probab=93.15  E-value=0.051  Score=29.01  Aligned_cols=21  Identities=38%  Similarity=0.706  Sum_probs=19.3

Q ss_pred             eeeccccccccchHHHHHhhc
Q 043013           65 WSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL~   85 (179)
                      +.|..|..+|.+...|+.|+.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            369999999999999999987

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.87  E-value=0.054  Score=37.08  Aligned_cols=28  Identities=29%  Similarity=0.564  Sum_probs=24.6

Q ss_pred             CeeeeccccccccchHHHHHhhcccchHHHH
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLRGKKHKAKE   93 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~GKKHKAk~   93 (179)
                      ..-.|..|++.|.   +|..|+.+++|+.-.
T Consensus         4 k~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    4 KPGYCENCRVKYD---DLEEHIQSEKHRKFA   31 (49)
T ss_pred             CCccCccccchhh---hHHHHhCCHHHHHHH
Confidence            4568999999997   699999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>PTZ00448 hypothetical protein; Provisional

Probab=92.82  E-value=0.013  Score=54.08  Aligned_cols=26  Identities=12%  Similarity=0.070  Sum_probs=23.0

Q ss_pred             eccCCCCCCCcccccCCCCCCCCCCc
Q 043013           31 VKPYPNLCGSKQEATTLPADSGKPCS   56 (179)
Q Consensus        31 ~Kpd~n~ygvKRKaktlp~~s~Ev~~   56 (179)
                      +|+|||+||+|||+..+||++.+.|.
T Consensus       334 ~KSDwHrYNLKRkl~gLppvse~eF~  359 (373)
T PTZ00448        334 YRSEWHIFNTKRNARKMEPISEEEFL  359 (373)
T ss_pred             hhhhHHHHHHHHHhcCCCCCCHHHHH
Confidence            79999999999999999999866553

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=92.82  E-value=0.072  Score=30.36  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=19.4

Q ss_pred             eeeccccccccchHHHHHhhc
Q 043013           65 WSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..|..|+.+|.+..+|..|++
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCccCCccCChhHHHHHhH
Confidence            469999999999999999994

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=92.75  E-value=0.043  Score=37.76  Aligned_cols=30  Identities=27%  Similarity=0.430  Sum_probs=25.3

Q ss_pred             CCeeeeccccccccchHHHHHhhcccchHHHHH
Q 043013           62 PMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEE   94 (179)
Q Consensus        62 ~~eWsCalCqvt~TSE~~L~nHL~GKKHKAk~a   94 (179)
                      ++.-.|..|.+.|.   +|..|+.|++|+.-..
T Consensus         3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~   32 (49)
T smart00586        3 KKPGYCENCREKYD---DLETHLLSEKHRRFAE   32 (49)
T ss_pred             CCCcccccHhHHHh---hHHHHhccHHHHHHHc
Confidence            34678999999987   8999999999998643

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.69  E-value=0.25  Score=44.09  Aligned_cols=45  Identities=20%  Similarity=0.339  Sum_probs=37.2

Q ss_pred             CCCcCCCcCCCeeeeccccccccchHHHHHhhcccchHHHHHHhHH
Q 043013           53 KPCSTGSKKPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLER   98 (179)
Q Consensus        53 Ev~~~k~K~~~eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL~a   98 (179)
                      +++-.+.+..-.-+|.+|++--- +.-+.-|..||+|+.+++.|+.
T Consensus        24 ~splakyn~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs   68 (264)
T KOG3032|consen   24 DSPLAKYNESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS   68 (264)
T ss_pred             ccHhhccCCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence            33334445555789999999988 9999999999999999999984

>KOG4722 consensus Zn-finger protein [General function prediction only]

Probab=88.44  E-value=0.25  Score=47.79  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=30.8

Q ss_pred             eeeeccccccccchHHHHHhhcccchHHHHHHhH
Q 043013           64 HWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE   97 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL~   97 (179)
                      ..-|++|+|--+||--|-+|..|+||++.+..+.
T Consensus       493 kkqcslcnvlissevylfshvkgrkhqqal~e~~  526 (672)
T KOG4722|consen  493 KKQCSLCNVLISSEVYLFSHVKGRKHQQALNELL  526 (672)
T ss_pred             hhccchhhhhhhhhhhhhhhhcchhHHHHHHHHh
Confidence            6689999999999999999999999999876553

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=88.33  E-value=0.28  Score=39.92  Aligned_cols=35  Identities=23%  Similarity=0.452  Sum_probs=32.9

Q ss_pred             eeeeccccccccchHHHHHhhcccchHHHHHHhHH
Q 043013           64 HWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLER   98 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL~a   98 (179)
                      .+.|-.|-..|.++.+|.-|..||.||-.+.+|+.
T Consensus        57 qfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~   91 (129)
T KOG3408|consen   57 QFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE   91 (129)
T ss_pred             eeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence            78999999999999999999999999999988864

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=85.80  E-value=0.53  Score=26.32  Aligned_cols=19  Identities=42%  Similarity=0.880  Sum_probs=15.6

Q ss_pred             eeccccccccchHHHHHhhc
Q 043013           66 SCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        66 sCalCqvt~TSE~~L~nHL~   85 (179)
                      .|..|.-+++ +.+|..|++
T Consensus         2 ~C~~C~y~t~-~~~l~~H~~   20 (24)
T PF13909_consen    2 KCPHCSYSTS-KSNLKRHLK   20 (24)
T ss_dssp             E-SSSS-EES-HHHHHHHHH
T ss_pred             CCCCCCCcCC-HHHHHHHHH
Confidence            6999999998 999999986

>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex

Probab=85.76  E-value=0.61  Score=39.26  Aligned_cols=33  Identities=21%  Similarity=0.632  Sum_probs=29.8

Q ss_pred             eeeccccccccchHHHHHhhcccchHHHHHHhH
Q 043013           65 WSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE   97 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL~   97 (179)
                      +.|++|...+.-+.....||+++=|+..+.-+.
T Consensus         1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~   33 (165)
T PF04988_consen    1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQ   33 (165)
T ss_pred             CccceeeeecccHHHHHHHHccchHHHHHHHHH
Confidence            479999999999999999999999998777663

The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=83.25  E-value=0.7  Score=27.61  Aligned_cols=19  Identities=21%  Similarity=0.592  Sum_probs=17.3

Q ss_pred             eeccccccccchHHHHHhhc
Q 043013           66 SCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        66 sCalCqvt~TSE~~L~nHL~   85 (179)
                      .|.+|+... ++..+|+||.
T Consensus         3 ~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        3 QCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHHH
Confidence            599999998 8899999997

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.15  E-value=0.75  Score=32.68  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=17.8

Q ss_pred             CCCeeeeccccccccchHHHHHhhc
Q 043013           61 KPMHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        61 ~~~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ....-+|.+|..++.+..+|..||.
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle   45 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLE   45 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHH
T ss_pred             cCCCCCCCcchhhccchhhHHHHHH
Confidence            3346799999999999999999995

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]

Probab=82.47  E-value=0.23  Score=45.09  Aligned_cols=36  Identities=17%  Similarity=0.438  Sum_probs=31.9

Q ss_pred             CeeeeccccccccchHHHHHhhcccchHHHHHHhHH
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLER   98 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL~a   98 (179)
                      ..|+|..||..|.-|+.|.-|+.+.-|+-.+.....
T Consensus        24 lRwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~~   59 (309)
T KOG2837|consen   24 LRWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFAL   59 (309)
T ss_pred             HHHHHHHHHHHhccccccccccCCHHHHHHHHHHHh
Confidence            489999999999999999999999999988765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	98.01
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.95
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.2
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	95.62
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.66
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	94.56
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.08
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	94.03
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	93.97
1ard_A	29	Yeast transcription factor ADR1; transcription reg	93.83
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	93.81
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	93.75
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.7
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	93.61
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	93.46
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	93.31
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	93.17
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.12
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	92.92
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.87
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	92.0
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	92.83
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	92.81
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.78
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	92.71
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.66
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.61
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	92.6
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	92.58
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.51
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	92.5
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	92.49
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.47
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	92.47
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.45
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	92.43
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.41
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	92.34
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	92.33
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	92.32
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.3
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	92.24
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	92.24
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	92.23
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.2
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	92.19
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	92.16
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.1
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.09
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.08
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	92.06
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.02
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	92.01
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	92.0
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	92.0
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	91.99
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	91.99
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.97
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	91.97
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	91.21
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	91.96
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	91.93
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	91.92
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.92
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.9
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	91.89
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.89
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	91.84
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	91.78
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	91.77
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	91.76
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.76
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	91.75
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.75
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.73
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	91.72
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.71
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.69
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	91.68
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	91.68
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.67
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.66
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	91.66
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	91.64
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	91.63
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.62
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	91.61
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	91.61
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	91.51
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.48
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	91.45
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	91.44
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	91.43
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	91.39
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	91.37
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.34
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	91.32
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	91.29
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	91.26
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	91.23
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.23
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.19
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	91.16
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	91.14
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	91.14
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	90.46
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.07
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	91.05
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	91.04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	91.03
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	91.02
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.02
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	91.0
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	91.0
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.0
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	90.96
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.94
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	90.92
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	90.91
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	90.89
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.89
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	90.83
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	90.83
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	90.83
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.81
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.8
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.77
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	90.76
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.75
1paa_A	30	Yeast transcription factor ADR1; transcription reg	90.71
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.71
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.66
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	90.59
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	90.56
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.53
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.52
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	90.45
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.42
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	90.24
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	90.23
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	90.2
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	90.11
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	89.77
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	89.76
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.75
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	89.65
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	89.58
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	89.46
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	89.29
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	89.18
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	89.16
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	89.08
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	88.8
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	88.33
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	88.32
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	88.29
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	88.27
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	88.21
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	88.07
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	88.0
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	87.99
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	87.89
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	87.86
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	87.85
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	87.57
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	87.57
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	87.54
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	87.51
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	87.22
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	86.94
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	86.71
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	86.48
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	86.4
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	86.15
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	85.92
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	85.75
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	85.64
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	85.38
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	85.36
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	85.3
2epa_A	72	Krueppel-like factor 10; transforming growth facto	84.95
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	84.65
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	84.35
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	84.31
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	84.05
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.89
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	83.77
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	83.72
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	83.56
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	83.3
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	83.28
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	83.25
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	83.05
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	82.72
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	81.52
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	80.74
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	80.69
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	80.56
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	80.37
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	80.32
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	80.19

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=98.01  E-value=2.4e-06  Score=64.37  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=32.6

Q ss_pred             CCCeeeeccccccccchHHHHHhhcccchHHHHHHh
Q 043013           61 KPMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGL   96 (179)
Q Consensus        61 ~~~eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL   96 (179)
                      ....|.|.+|++.|+|+..|.+|+.||+|+.++..+
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~  125 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR  125 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHh
Confidence            445789999999999999999999999999998765

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.95  E-value=3e-06  Score=63.87  Aligned_cols=37  Identities=19%  Similarity=0.253  Sum_probs=33.5

Q ss_pred             CCeeeeccccccccchHHHHHhhcccchHHHHHHhHH
Q 043013           62 PMHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLER   98 (179)
Q Consensus        62 ~~eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL~a   98 (179)
                      ...|.|.+|+++|+|+..+..|+.|++|+.++..+..
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            3479999999999999999999999999999876655

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.20  E-value=0.00014  Score=56.40  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=32.7

Q ss_pred             CeeeeccccccccchHHHHHhhcccchHHHHHHhH
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE   97 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL~   97 (179)
                      ..+.|.+|.+.|.++..|+.|+++|+|+.++..|.
T Consensus        49 kpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~   83 (124)
T 1zr9_A           49 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS   83 (124)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhc
Confidence            47899999999999999999999999999988775

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=95.62  E-value=0.0073  Score=43.76  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=28.9

Q ss_pred             Ceeeecccccccc--chHHHHHhhcccchHHHHHHh
Q 043013           63 MHWSCALCQVSST--SKRNLDEHLRGKKHKAKEEGL   96 (179)
Q Consensus        63 ~eWsCalCqvt~T--SE~~L~nHL~GKKHKAk~aaL   96 (179)
                      +.|+|..|.+-.+  |-+....|++|+||+.+++..
T Consensus         2 PkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CCcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            5689999999984  566679999999999998755

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.66  E-value=0.016  Score=52.05  Aligned_cols=37  Identities=22%  Similarity=0.551  Sum_probs=31.8

Q ss_pred             eeeeccccc------cccchHHHHHhhcccchHHHHHHhHHHh
Q 043013           64 HWSCALCQV------SSTSKRNLDEHLRGKKHKAKEEGLEREK  100 (179)
Q Consensus        64 eWsCalCqv------t~TSE~~L~nHL~GKKHKAk~aaL~ak~  100 (179)
                      ...|.+|..      ++..|..++.|+.||+||-++...+.+.
T Consensus       360 ~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~~  402 (409)
T 3eph_A          360 HYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQA  402 (409)
T ss_dssp             EEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             ceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            347999998      8999999999999999999988665544

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=94.56  E-value=0.019  Score=29.59  Aligned_cols=22  Identities=36%  Similarity=0.732  Sum_probs=20.3

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|..|...|.+...|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHH
Confidence            5889999999999999999974

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=94.08  E-value=0.028  Score=30.29  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHH
Confidence            35899999999999999999975

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=94.03  E-value=0.031  Score=28.77  Aligned_cols=22  Identities=27%  Similarity=0.688  Sum_probs=20.1

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|.+|...|.+...|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999975

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=93.97  E-value=0.038  Score=29.98  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHH
Confidence            35899999999999999999985

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=93.83  E-value=0.031  Score=28.64  Aligned_cols=22  Identities=23%  Similarity=0.646  Sum_probs=19.9

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|.+|...|.+...|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            3679999999999999999975

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=93.81  E-value=0.031  Score=28.50  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=20.0

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|..|...|.+...|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            4789999999999999999974

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=93.75  E-value=0.027  Score=50.69  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=29.0

Q ss_pred             CeeeeccccccccchHHHHHhhcccchHHHHHH
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLRGKKHKAKEEG   95 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aa   95 (179)
                      ..-+|..|++-|.++.-+.+||.||+|+-+.+.
T Consensus       291 ~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~  323 (402)
T 4dgw_A          291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESK  323 (402)
T ss_dssp             TEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHH
T ss_pred             cCeeehhhhhhhccccccHHHhcccccchhHHH
Confidence            356899999999999999999999999876543

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.70  E-value=0.036  Score=30.13  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.7

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeecCcCCCCcCchHHHHHHHH
Confidence            45889999999999999999974

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=93.61  E-value=0.04  Score=27.97  Aligned_cols=21  Identities=38%  Similarity=0.757  Sum_probs=19.3

Q ss_pred             eeeccccccccchHHHHHhhc
Q 043013           65 WSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL~   85 (179)
                      +.|.+|...|.+...|..|+.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHH
Confidence            579999999999999999984

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=93.46  E-value=0.039  Score=28.37  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ...|..|...|.+...|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            4689999999999999999985

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=93.31  E-value=0.046  Score=27.94  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=20.1

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|..|...|.....|..|+.
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5789999999999999999974

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=93.17  E-value=0.048  Score=28.34  Aligned_cols=22  Identities=27%  Similarity=0.756  Sum_probs=20.1

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|..|...|.....|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHT
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            4689999999999999999974

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.12  E-value=0.05  Score=29.75  Aligned_cols=23  Identities=35%  Similarity=0.795  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHHH
Confidence            45899999999999999999974

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=92.92  E-value=0.039  Score=28.02  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=19.8

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|..|...|.+...|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHH
Confidence            4679999999999999999974

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.87  E-value=0.069  Score=29.19  Aligned_cols=23  Identities=17%  Similarity=0.569  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ....|.+|...|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            35789999999999999999985

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=92.00  E-value=0.019  Score=29.34  Aligned_cols=22  Identities=23%  Similarity=0.546  Sum_probs=19.9

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|..|...|.+...|..|++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            4679999999999999999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.83  E-value=0.069  Score=30.11  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGG
T ss_pred             CCeECCCCCCCcCCHHHHHHHHH
Confidence            46899999999999999999985

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=92.81  E-value=0.067  Score=29.29  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|..|...|.+...|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCccCCCCCcccCcHHHHHHHHH
Confidence            35889999999999999999974

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.78  E-value=0.061  Score=29.18  Aligned_cols=23  Identities=39%  Similarity=0.725  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH
Confidence            35899999999999999999984

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.71  E-value=0.073  Score=30.16  Aligned_cols=23  Identities=26%  Similarity=0.619  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHH
Confidence            46889999999999999999985

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.66  E-value=0.069  Score=29.17  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.....|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEECCCCCceeCCHHHHHHHHH
Confidence            46899999999999999999975

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.61  E-value=0.056  Score=29.63  Aligned_cols=23  Identities=26%  Similarity=0.693  Sum_probs=20.7

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHH
Confidence            35789999999999999999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=92.60  E-value=0.078  Score=29.92  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccCCCcChhhCCHHHHHHHHH
Confidence            45899999999999999999985

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=92.58  E-value=0.051  Score=27.76  Aligned_cols=22  Identities=27%  Similarity=0.777  Sum_probs=19.8

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|..|...|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            3679999999999999999975

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.51  E-value=0.086  Score=30.53  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQK   33 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999985

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.50  E-value=0.07  Score=30.00  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGG
T ss_pred             CCeeCCCccchhCCHHHHHHHHH
Confidence            45889999999999999999985

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=92.49  E-value=0.076  Score=29.85  Aligned_cols=23  Identities=30%  Similarity=0.509  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~   32 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQR   32 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHhh
Confidence            46899999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.47  E-value=0.079  Score=30.47  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCEECCCCChhhCChHHHHHHHH
Confidence            46899999999999999999984

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.47  E-value=0.074  Score=30.58  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999984

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.45  E-value=0.07  Score=30.68  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQR   33 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHG
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            35889999999999999999985

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.43  E-value=0.075  Score=30.00  Aligned_cols=23  Identities=17%  Similarity=0.405  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTH
T ss_pred             CCEeCCCcChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.41  E-value=0.074  Score=30.69  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|++..+|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQK   33 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            35889999999999999999985

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.34  E-value=0.073  Score=30.21  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTR   33 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCCccCCHHHHHHHhh
Confidence            35889999999999999999984

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.33  E-value=0.073  Score=29.92  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=20.6

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQK   31 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            35789999999999999999975

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.32  E-value=0.08  Score=30.55  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emy_A           11 NPYECHECGKAFSRKYQLISHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCcHHHHHHHHH
Confidence            46899999999999999999975

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.30  E-value=0.078  Score=30.59  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999984

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=92.24  E-value=0.067  Score=29.34  Aligned_cols=22  Identities=18%  Similarity=0.537  Sum_probs=19.8

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ...|.+|...|.+...|..|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHH
Confidence            3679999999999999999985

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=92.24  E-value=0.048  Score=37.74  Aligned_cols=31  Identities=26%  Similarity=0.569  Sum_probs=28.9

Q ss_pred             eeccccccccchHHHHHhhcccchHHHHHHh
Q 043013           66 SCALCQVSSTSKRNLDEHLRGKKHKAKEEGL   96 (179)
Q Consensus        66 sCalCqvt~TSE~~L~nHL~GKKHKAk~aaL   96 (179)
                      -|++|.+.|+..-.|+.|+-.+.|=+++..+
T Consensus        15 eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~   45 (55)
T 2yrk_A           15 ECTLCGVKYSARLSIRDHIFSKQHISKVRET   45 (55)
T ss_dssp             CCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             cccccCcccccccchhhhhccHHHHHHHHHH
Confidence            7999999999999999999999999998744

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.23  E-value=0.08  Score=30.44  Aligned_cols=23  Identities=35%  Similarity=0.553  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999984

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.20  E-value=0.091  Score=30.30  Aligned_cols=23  Identities=22%  Similarity=0.600  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeeCCCcCCccCCHHHHHHHHH
Confidence            46899999999999999999985

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.19  E-value=0.078  Score=30.70  Aligned_cols=23  Identities=30%  Similarity=0.654  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHH
T ss_pred             CCeECcccChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.16  E-value=0.083  Score=30.47  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRG   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            45889999999999999999984

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.10  E-value=0.079  Score=30.57  Aligned_cols=23  Identities=26%  Similarity=0.609  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            45899999999999999999984

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=92.09  E-value=0.079  Score=30.69  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.08  E-value=0.082  Score=30.61  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|++...|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQR   33 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            46889999999999999999975

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=92.06  E-value=0.14  Score=30.05  Aligned_cols=25  Identities=16%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             CCCeeeeccccccccchHHHHHhhc
Q 043013           61 KPMHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        61 ~~~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ....+.|.+|...|.....|..|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~   33 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKL   33 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHH
Confidence            3456899999999999999999985

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.02  E-value=0.096  Score=30.32  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.01  E-value=0.09  Score=30.44  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCCccCCHHHHHHHHH
Confidence            46899999999999999999984

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=92.00  E-value=0.091  Score=29.39  Aligned_cols=23  Identities=22%  Similarity=0.608  Sum_probs=20.7

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH
T ss_pred             CceECCCCCcccCCHHHHHHHHH
Confidence            35789999999999999999975

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.00  E-value=0.1  Score=30.16  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQR   33 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGG
T ss_pred             cCCCCCCCCcccCCHHHHHHHHH
Confidence            45899999999999999999985

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.99  E-value=0.092  Score=30.01  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQ   31 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.99  E-value=0.088  Score=29.86  Aligned_cols=23  Identities=35%  Similarity=0.551  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQR   33 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHhHHHHHHH
Confidence            45899999999999999999984

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.97  E-value=0.098  Score=30.15  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCChHHHHHHHh
Confidence            46899999999999999999985

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.97  E-value=0.094  Score=30.22  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQR   33 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHT
T ss_pred             cCccCCCCCCccCChHHHHHHHH
Confidence            46899999999999999999985

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=91.21  E-value=0.029  Score=28.97  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.9

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|..|...|.+..+|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            4689999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.96  E-value=0.088  Score=30.49  Aligned_cols=23  Identities=22%  Similarity=0.543  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQR   33 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            45889999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.93  E-value=0.093  Score=30.50  Aligned_cols=23  Identities=17%  Similarity=0.414  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHS   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTT
T ss_pred             cccCCCCCCcccCcHHHHHHHHH
Confidence            46889999999999999999985

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.92  E-value=0.1  Score=30.08  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999984

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.92  E-value=0.081  Score=30.42  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQK   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CCccCCccChhhCCHHHHHHHHH
Confidence            35899999999999999999974

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.90  E-value=0.092  Score=29.26  Aligned_cols=22  Identities=32%  Similarity=0.641  Sum_probs=20.1

Q ss_pred             CeeeeccccccccchHHHHHh-h
Q 043013           63 MHWSCALCQVSSTSKRNLDEH-L   84 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nH-L   84 (179)
                      ..+.|..|...|.+...|..| +
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H~~   30 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRHVI   30 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            468999999999999999999 5

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.89  E-value=0.097  Score=30.18  Aligned_cols=23  Identities=22%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|++..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRR   33 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHT
T ss_pred             CCeECCCCCceeCCHHHHHHHHH
Confidence            46899999999999999999985

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.89  E-value=0.088  Score=30.48  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQQ   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECcccCCccCCHhHHHHHHH
Confidence            46899999999999999999974

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.84  E-value=0.089  Score=30.23  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQR   33 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCeeCCCCCchhCCHHHHHHHHH
Confidence            45889999999999999999985

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.78  E-value=0.095  Score=30.23  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQV   33 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHT
T ss_pred             CCeECCcCChhhCCHHHHHHHHH
Confidence            45889999999999999999985

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.77  E-value=0.095  Score=30.10  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             cCccCCCCCCCcCCHHHHHHHHH
Confidence            46899999999999999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.76  E-value=0.096  Score=30.20  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            35789999999999999999984

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=91.76  E-value=0.1  Score=30.08  Aligned_cols=23  Identities=17%  Similarity=0.475  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             cCcCCCCCcchhCCHHHHHHHHH
Confidence            46899999999999999999985

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.75  E-value=0.11  Score=29.58  Aligned_cols=23  Identities=22%  Similarity=0.595  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQK   33 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            35899999999999999999985

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.75  E-value=0.11  Score=29.99  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGG
T ss_pred             cCeECCCCCCeeCCHHHHHHHhh
Confidence            45889999999999999999974

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.73  E-value=0.1  Score=30.13  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.72  E-value=0.085  Score=30.31  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQA   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHT
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            45889999999999999999985

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.71  E-value=0.099  Score=30.15  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQ   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.69  E-value=0.085  Score=28.97  Aligned_cols=23  Identities=17%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             Ceeeeccccccccch-HHHHHhhc
Q 043013           63 MHWSCALCQVSSTSK-RNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE-~~L~nHL~   85 (179)
                      ..+.|.+|...|.+. ..|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~   31 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIW   31 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHH
Confidence            358999999999999 99999974

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=91.68  E-value=0.11  Score=29.82  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGG
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            35899999999999999999985

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.68  E-value=0.11  Score=30.02  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQK   33 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999985

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.67  E-value=0.099  Score=30.14  Aligned_cols=23  Identities=26%  Similarity=0.556  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQK   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.66  E-value=0.12  Score=29.83  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHh
Confidence            45899999999999999999975

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.66  E-value=0.11  Score=29.77  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            46899999999999999999984

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.64  E-value=0.11  Score=29.85  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCEECCccCchhCChHHHHHHhH
Confidence            45889999999999999999986

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=91.63  E-value=0.12  Score=31.20  Aligned_cols=23  Identities=26%  Similarity=0.639  Sum_probs=21.1

Q ss_pred             CCeeeeccccccccchHHHHHhh
Q 043013           62 PMHWSCALCQVSSTSKRNLDEHL   84 (179)
Q Consensus        62 ~~eWsCalCqvt~TSE~~L~nHL   84 (179)
                      ...+.|..|.++|++..+|..|+
T Consensus         6 ekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            6 PARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCCEETTTTEECSCHHHHHHHH
T ss_pred             ccCeECCCCCCccCCHhHccCcC
Confidence            35789999999999999999997

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.62  E-value=0.092  Score=30.17  Aligned_cols=23  Identities=26%  Similarity=0.484  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQR   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHG
T ss_pred             CCeECCCcChhhCCHHHHHHHHH
Confidence            45899999999999999999984

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.61  E-value=0.11  Score=29.88  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHM   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGG
T ss_pred             cCccCCCccchhCCHHHHHHHHH
Confidence            46899999999999999999975

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.61  E-value=0.087  Score=30.40  Aligned_cols=23  Identities=26%  Similarity=0.535  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytg_A           11 KPFKCGECGKSYNQRVHLTQHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSSHHHHTTGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999984

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.51  E-value=0.11  Score=29.64  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQK   33 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHT
T ss_pred             cCeeCCCCCCccCCHHHHHHHHH
Confidence            35899999999999999999985

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.48  E-value=0.09  Score=30.32  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCChhHHHHHhH
Confidence            35789999999999999999974

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.45  E-value=0.12  Score=29.78  Aligned_cols=23  Identities=17%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQL   33 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999985

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.44  E-value=0.1  Score=29.94  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=91.43  E-value=0.12  Score=29.63  Aligned_cols=23  Identities=26%  Similarity=0.340  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCeECCccccccCChHHHHHHHH
Confidence            46899999999999999999984

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.39  E-value=0.11  Score=29.90  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq4_A           11 KLYNCKECGKSFSRAPCLLKHER   33 (46)
T ss_dssp             CCCCBTTTTBCCSCHHHHHHHHH
T ss_pred             CCeECCCCCCccCchHHHHHHHH
Confidence            35889999999999999999974

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.37  E-value=0.09  Score=30.32  Aligned_cols=23  Identities=26%  Similarity=0.467  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en3_A           11 KPFQCKECGMNFSWSCSLFKHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHH
T ss_pred             CCeeCcccChhhCCHHHHHHHHH
Confidence            45899999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.34  E-value=0.11  Score=29.83  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQA   33 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHH
T ss_pred             CCeeccccCChhcCHHHHHHHHH
Confidence            45899999999999999999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.32  E-value=0.095  Score=30.33  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytt_A           11 KPYQCSECGKSFSGSYRLTQHWI   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            45889999999999999999975

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.29  E-value=0.083  Score=30.21  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2eox_A           11 KSYNCNECGKAFTRIFHLTRHQK   33 (44)
T ss_dssp             CCEEETTTTEEESSSHHHHTTHH
T ss_pred             CCeECcccCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.26  E-value=0.1  Score=30.35  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|....+|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRR   33 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCCeeCChHHHHHHHH
Confidence            45889999999999999999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.23  E-value=0.13  Score=29.53  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHER   33 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeECCCCCcccCchHHHHHHHh
Confidence            46899999999999999999985

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.23  E-value=0.13  Score=29.64  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep0_A           11 KPYKCDVCHKSFRYGSSLTVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeeCcccCcccCChHHHHHHHH
Confidence            46899999999999999999985

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.19  E-value=0.11  Score=30.10  Aligned_cols=23  Identities=22%  Similarity=0.600  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQR   33 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGG
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            35889999999999999999985

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.16  E-value=0.12  Score=29.82  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMR   33 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCcCCCccChhhCChHHHHHHHH
Confidence            35899999999999999999985

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=91.14  E-value=0.12  Score=31.78  Aligned_cols=23  Identities=26%  Similarity=0.606  Sum_probs=18.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        39 ~~~~C~~C~k~f~~~~~L~~H~~   61 (66)
T 2drp_A           39 KVYPCPFCFKEFTRKDNMTAHVK   61 (66)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHH
Confidence            45788888888888888888874

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=91.14  E-value=0.093  Score=31.23  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=18.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..|.|.+|...|.+...|..|+.
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~   25 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLR   25 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHH
T ss_pred             CCccCCCCcchhCChHHHHHHHH
Confidence            35788899999999988888875

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=90.46  E-value=0.04  Score=28.53  Aligned_cols=22  Identities=27%  Similarity=0.535  Sum_probs=19.7

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ...|.+|...|.+..+|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            3579999999999999999974

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.07  E-value=0.13  Score=29.80  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECCcCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=91.05  E-value=0.097  Score=30.29  Aligned_cols=23  Identities=17%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ely_A           11 KPFKCVECGKGFSRRSALNVHHK   33 (46)
T ss_dssp             CSBCCSSSCCCBSSTTHHHHHHH
T ss_pred             CCcccCccCcccCCHHHHHHHHH
Confidence            45899999999999999999975

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.04  E-value=0.12  Score=29.78  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytd_A           11 KPYKCSECGKAFHRHTHLNEHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCCeeCChHHHHHHHH
Confidence            46899999999999999999974

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=91.03  E-value=0.14  Score=32.42  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=17.7

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|++
T Consensus        16 ~~~~C~~C~k~f~~~~~l~~H~~   38 (74)
T 2lce_A           16 KPYKCDRCQASFRYKGNLASHKT   38 (74)
T ss_dssp             CSBCCTTSSCCBSCHHHHHHHHH
T ss_pred             CCeECCCCCceeCCHHHHHHHHH
Confidence            45778888888888888888863

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.02  E-value=0.13  Score=29.49  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|..|...|.+...|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTL   31 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CCEECCCCCCeeCChHHHHHHHH
Confidence            45889999999999999999974

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.02  E-value=0.13  Score=29.60  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytk_A           11 KPYKCNECGKVFTQNSHLTNHWR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEeCCcCCCccCCHHHHHHHHH
Confidence            46899999999999999999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.00  E-value=0.12  Score=29.61  Aligned_cols=23  Identities=22%  Similarity=0.187  Sum_probs=20.7

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQA   33 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            45889999999999999999974

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.00  E-value=0.13  Score=29.49  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQR   33 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCcCcccCCHHHHHHHHH
Confidence            45899999999999999999984

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=91.00  E-value=0.12  Score=29.81  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.7

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQR   33 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHH
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            35889999999999999999984

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.96  E-value=0.15  Score=29.51  Aligned_cols=23  Identities=30%  Similarity=0.535  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2elz_A           11 KPYKCEDCGKGYNRRLNLDMHQR   33 (46)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHGG
T ss_pred             CCeeCcccCchhCCHHHHHHHHH
Confidence            35889999999999999999985

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.94  E-value=0.11  Score=29.84  Aligned_cols=23  Identities=22%  Similarity=0.476  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            35789999999999999999985

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.92  E-value=0.1  Score=29.84  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2yu5_A           11 NPFKCSKCDRVFTQRNYLVQHER   33 (44)
T ss_dssp             CSEECSSSSCEESSSHHHHHHHH
T ss_pred             CCeECCCCCchhCCHHHHHHHhH
Confidence            35899999999999999999974

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=90.91  E-value=0.14  Score=29.60  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|....+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el6_A           11 NPYKCSQCEKSFSGKLRLLVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            45899999999999999999975

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.89  E-value=0.14  Score=29.54  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en6_A           11 KPYGCNECGKTFSQKSILSAHQR   33 (46)
T ss_dssp             CCEEETTTTEEESSHHHHHHHHH
T ss_pred             cCeECCCCCcccCchHHHHHHHH
Confidence            46899999999999999999975

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.89  E-value=0.14  Score=29.65  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em8_A           11 KPYKCVECGKGYKRRLDLDFHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECcccCchhCCHHHHHHHHH
Confidence            46899999999999999999985

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.83  E-value=0.13  Score=29.73  Aligned_cols=23  Identities=22%  Similarity=0.536  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHER   33 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHH
Confidence            45899999999999999999984

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=90.83  E-value=0.13  Score=30.60  Aligned_cols=25  Identities=32%  Similarity=0.704  Sum_probs=21.4

Q ss_pred             CeeeeccccccccchHHHHHhhccc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLRGK   87 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~GK   87 (179)
                      ..+.|.+|...|.+...|..|+...
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~h   52 (57)
T 1bbo_A           28 RPYHCTYCNFSFKTKGNLTKHMKSK   52 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CCccCCCCCchhcCHHHHHHHHHHh
Confidence            4589999999999999999998643

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=90.83  E-value=0.14  Score=30.96  Aligned_cols=23  Identities=30%  Similarity=0.589  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        23 k~~~C~~C~k~f~~~~~L~~H~~   45 (54)
T 1yui_A           23 QPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.81  E-value=0.12  Score=29.80  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yu8_A           11 KPYKCNECGKVFTQNSHLARHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSSHHHHHHTH
T ss_pred             CCeECCcCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.80  E-value=0.14  Score=29.58  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoo_A           11 RPYGCNECGKNFGRHSHLIEHLK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEEccccCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.77  E-value=0.12  Score=29.81  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|....+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            35889999999999999999974

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=90.76  E-value=0.12  Score=30.86  Aligned_cols=23  Identities=17%  Similarity=0.491  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|.+.|....+|..|+.
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCEECCCcCcccCCHHHHHHHhh
Confidence            35789999999999999999985

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.75  E-value=0.14  Score=29.47  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|....+|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2enc_A           11 KPFKCEECGKGFYTNSQCYSHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCCcCCChHHHHHHHH
Confidence            46899999999999999999974

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=90.71  E-value=0.11  Score=26.69  Aligned_cols=20  Identities=30%  Similarity=0.614  Sum_probs=18.5

Q ss_pred             eeeccccccccchHHHHHhh
Q 043013           65 WSCALCQVSSTSKRNLDEHL   84 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL   84 (179)
                      ..|..|...|.+...|..|+
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            3 YACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             SBCTTTCCBCSSSHHHHHHH
T ss_pred             cCCcccCcccCChHHHHHHH
Confidence            57999999999999999994

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.71  E-value=0.14  Score=29.44  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emp_A           11 KPYMCNECGKAFSVYSSLTTHQV   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHH
T ss_pred             cCeECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.66  E-value=0.12  Score=29.83  Aligned_cols=23  Identities=22%  Similarity=0.498  Sum_probs=20.6

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            35789999999999999999974

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=90.59  E-value=0.14  Score=30.46  Aligned_cols=23  Identities=26%  Similarity=0.661  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        31 ~~~~C~~C~~~f~~~~~l~~H~~   53 (57)
T 3uk3_C           31 KPYKCEFCEYAAAQKTSLRYHLE   53 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCcCCCCCcchhCCHHHHHHHHH
Confidence            45899999999999999999985

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.56  E-value=0.13  Score=29.54  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2epw_A           11 KPCKCTECGKAFCWKSQLIMHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHH
T ss_pred             CCeeCCCCCCccCCHHHHHHHHH
Confidence            35899999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.53  E-value=0.15  Score=29.52  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.7

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            35889999999999999999974

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.52  E-value=0.13  Score=29.87  Aligned_cols=23  Identities=17%  Similarity=0.392  Sum_probs=20.7

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytm_A           11 KPYKCMECGKAFGDNSSCTQHQR   33 (46)
T ss_dssp             CSSSBTTTTBCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            35789999999999999999974

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=90.45  E-value=0.17  Score=25.67  Aligned_cols=22  Identities=27%  Similarity=0.593  Sum_probs=19.8

Q ss_pred             eeeec--cccccccchHHHHHhhc
Q 043013           64 HWSCA--LCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCa--lCqvt~TSE~~L~nHL~   85 (179)
                      .+.|.  .|...|.+...|..|+.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHH
Confidence            36799  99999999999999975

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.42  E-value=0.14  Score=29.42  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=20.7

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSM   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCcCCchhCCHHHHHHHHH
Confidence            35789999999999999999974

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=90.24  E-value=0.15  Score=26.96  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.9

Q ss_pred             eeeec--cccccccchHHHHHhhc
Q 043013           64 HWSCA--LCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCa--lCqvt~TSE~~L~nHL~   85 (179)
                      .+.|.  .|...|.+...|..|+.
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~   26 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKK   26 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHG
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHH
Confidence            46799  89999999999999985

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=90.23  E-value=0.14  Score=30.83  Aligned_cols=22  Identities=23%  Similarity=0.646  Sum_probs=16.4

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|.+|...|.+...|..|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCcCCCCccccCCHHHHHHHHH
Confidence            3667778888888888777764

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=90.20  E-value=0.18  Score=28.98  Aligned_cols=23  Identities=22%  Similarity=0.574  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|....+|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQN   33 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGG
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            35789999999999999999985

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=90.11  E-value=0.13  Score=30.53  Aligned_cols=21  Identities=24%  Similarity=0.657  Sum_probs=19.6

Q ss_pred             eeeccccccccchHHHHHhhc
Q 043013           65 WSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL~   85 (179)
                      +.|.+|...|.+...|..|+.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~   22 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIR   22 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH
T ss_pred             CcCCCCcCcCCCHHHHHHHHH
Confidence            689999999999999999984

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=89.77  E-value=0.15  Score=29.29  Aligned_cols=23  Identities=26%  Similarity=0.622  Sum_probs=20.7

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~   31 (45)
T 2epq_A            9 KPYSCPVCGLRFKRKDRMSYHVR   31 (45)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHH
Confidence            35789999999999999999974

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=89.76  E-value=0.18  Score=30.92  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~   31 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYV   31 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHH
T ss_pred             cceECCCCcchhCCHHHHHHHHH
Confidence            47899999999999999999974

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.75  E-value=0.18  Score=28.98  Aligned_cols=23  Identities=22%  Similarity=0.160  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yso_A           11 KSHQCRECGEIFFQYVSLIEHQV   33 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEEccccChhhCCHHHHHHHHH
Confidence            35899999999999999999974

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=89.65  E-value=0.4  Score=30.40  Aligned_cols=21  Identities=24%  Similarity=0.545  Sum_probs=12.8

Q ss_pred             eeeeccccccccchHHHHHhh
Q 043013           64 HWSCALCQVSSTSKRNLDEHL   84 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL   84 (179)
                      .+.|.+|...|.+...|..|+
T Consensus        18 ~~~C~~C~~~f~~~~~l~~H~   38 (77)
T 2cot_A           18 RYKCDECGKSFSHSSDLSKHR   38 (77)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHH
T ss_pred             CEECCCCCcccCCHHHHHHHH
Confidence            455666666666666666665

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=89.58  E-value=0.21  Score=31.22  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=19.2

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~   30 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHER   30 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            45788889888888888888875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=89.46  E-value=0.21  Score=26.28  Aligned_cols=21  Identities=29%  Similarity=0.588  Sum_probs=19.0

Q ss_pred             eeec--cccccccchHHHHHhhc
Q 043013           65 WSCA--LCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        65 WsCa--lCqvt~TSE~~L~nHL~   85 (179)
                      +.|.  .|...|.+...|..|+.
T Consensus         3 ~~C~~~~C~k~f~~~~~L~~H~~   25 (31)
T 1sp2_A            3 FMCTWSYCGKRFTRSDELQRHKR   25 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHT
T ss_pred             cCCcCCCCCcccCCHhHHHHHHH
Confidence            5687  99999999999999985

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=89.29  E-value=0.2  Score=31.62  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=18.3

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|++
T Consensus        41 ~~~~C~~C~~~f~~~~~L~~H~~   63 (72)
T 1x6e_A           41 KPYKCLECGKAFSQNSGLINHQR   63 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            35788888888888888888873

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.18  E-value=0.2  Score=31.84  Aligned_cols=23  Identities=26%  Similarity=0.547  Sum_probs=20.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..|.|.+|...|.+...|..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~   28 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQR   28 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCCeeCCHHHHHHHHH
Confidence            46889999999999999999973

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=89.16  E-value=0.2  Score=30.11  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|++
T Consensus        29 ~~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A           29 KPYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=89.08  E-value=0.23  Score=31.01  Aligned_cols=22  Identities=23%  Similarity=0.647  Sum_probs=14.4

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|.+|...|.+..+|..|++
T Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           49 PFQCRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             CEECTTTCCEESCHHHHHHHHT
T ss_pred             CeECCCCCchhCCHHHHHHHHH
Confidence            4666666666666666666653

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.80  E-value=0.23  Score=31.54  Aligned_cols=24  Identities=13%  Similarity=0.447  Sum_probs=21.6

Q ss_pred             CCeeeeccccccccchHHHHHhhc
Q 043013           62 PMHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        62 ~~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ...+.|.+|...|.+...|..|+.
T Consensus        36 ~~~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A           36 ALRFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             TCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CcccCCCCCCchhCCHHHHHHHHH
Confidence            456999999999999999999974

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=88.33  E-value=0.24  Score=31.51  Aligned_cols=23  Identities=17%  Similarity=0.492  Sum_probs=20.5

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~   36 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHIL   36 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCcCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=88.32  E-value=0.05  Score=29.58  Aligned_cols=22  Identities=18%  Similarity=0.561  Sum_probs=19.7

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|..|...|.+...|..|+.
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~   23 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIK   23 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTT
T ss_pred             CCCCCCCCcccCCHHHHHHHHH
Confidence            3579999999999999999974

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=88.29  E-value=0.26  Score=30.86  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=17.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|++
T Consensus        56 ~~~~C~~C~~~f~~~~~l~~H~~   78 (82)
T 2kmk_A           56 KPHKCQVCGKAFSQSSNLITHSR   78 (82)
T ss_dssp             CCEECTTTSCEESSHHHHHHHHH
T ss_pred             CCCcCCCcchhhCChHHHHHHHH
Confidence            35788888888888888888864

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=88.27  E-value=0.28  Score=29.61  Aligned_cols=23  Identities=17%  Similarity=0.492  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (54)
T 2eps_A           11 KPYICQSCGKGFSRPDHLNGHIK   33 (54)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=88.21  E-value=0.26  Score=31.53  Aligned_cols=23  Identities=13%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~~   83 (90)
T 1a1h_A           61 KPFACDICGRKFARSDERKRHTK   83 (90)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHG
T ss_pred             CCccCCCCCchhCCHHHHHHHHH
Confidence            45889999999999999999985

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=88.07  E-value=0.26  Score=31.01  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=21.2

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~   35 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQR   35 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999985

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=88.00  E-value=0.24  Score=31.04  Aligned_cols=21  Identities=29%  Similarity=0.615  Sum_probs=15.8

Q ss_pred             eeeccccccccchHHHHHhhc
Q 043013           65 WSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL~   85 (179)
                      |.|.+|...|.+...|..|+.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~   22 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLL   22 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHH
T ss_pred             ccCCCCcccccCchhHHHHHH
Confidence            567777777777777777764

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=87.99  E-value=0.26  Score=31.10  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|++
T Consensus        44 ~~~~C~~C~k~f~~~~~L~~H~~   66 (74)
T 2lce_A           44 KPYRCNICGAQFNRPANLKTHTR   66 (74)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCEECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999984

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=87.89  E-value=0.3  Score=27.04  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=20.3

Q ss_pred             Ceeeecc--ccccccchHHHHHhhc
Q 043013           63 MHWSCAL--CQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCal--Cqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+  |...|.+...|..|+.
T Consensus         7 k~~~C~~~~C~k~f~~~~~L~~H~~   31 (37)
T 1va1_A            7 KQHICHIQGCGKVYGKTSHLRAHLR   31 (37)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHH
Confidence            3588996  9999999999999974

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.86  E-value=0.31  Score=30.93  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=21.2

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        45 ~~~~C~~C~~~f~~~~~L~~H~~   67 (77)
T 2cot_A           45 KPYKCDECGKAFIQRSHLIGHHR   67 (77)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCeeCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999984

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.85  E-value=0.26  Score=30.79  Aligned_cols=23  Identities=22%  Similarity=0.673  Sum_probs=20.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.....|..|+.
T Consensus        36 ~~~~C~~C~~~f~~~~~L~~H~~   58 (70)
T 1x5w_A           36 RPFKCNYCSFDTKQPSNLSKHMK   58 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEeCCCCCCccCCHHHHHHHHH
Confidence            35899999999999999999974

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.57  E-value=0.31  Score=30.90  Aligned_cols=23  Identities=17%  Similarity=0.469  Sum_probs=19.3

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~   68 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHAD   68 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             cceECCCCCChhCCHHHHHHHHH
Confidence            46889999999999999988873

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=87.57  E-value=0.31  Score=31.58  Aligned_cols=21  Identities=24%  Similarity=0.629  Sum_probs=11.0

Q ss_pred             eeeeccccccccchHHHHHhh
Q 043013           64 HWSCALCQVSSTSKRNLDEHL   84 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL   84 (179)
                      .+.|.+|...|.+...|..|+
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~   55 (95)
T 2yt9_A           35 PYSCPVCGLRFKRKDRMSYHV   55 (95)
T ss_dssp             SEECSSSCCEESCHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHH
Confidence            345555555555555555554

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=87.54  E-value=0.32  Score=31.03  Aligned_cols=23  Identities=17%  Similarity=0.488  Sum_probs=20.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|++
T Consensus        64 ~~~~C~~C~~~f~~~~~l~~H~~   86 (89)
T 2wbs_A           64 RPFQCQKCDRAFSRSDHLALHMK   86 (89)
T ss_dssp             CCEECSSSSCEESSHHHHHHHGG
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            46889999999999999999985

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.51  E-value=0.29  Score=31.07  Aligned_cols=23  Identities=30%  Similarity=0.657  Sum_probs=21.2

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        44 ~~~~C~~C~~~f~~~~~L~~H~~   66 (77)
T 2ct1_A           44 AKFHCPHCDTVIARKSDLGVHLR   66 (77)
T ss_dssp             SSEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999985

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=87.22  E-value=0.35  Score=31.40  Aligned_cols=22  Identities=27%  Similarity=0.614  Sum_probs=16.8

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .|.|.+|...|.+...|..|+.
T Consensus         8 ~~~C~~C~~~f~~~~~l~~H~~   29 (96)
T 2dmd_A            8 PHKCEVCGKCFSRKDKLKTHMR   29 (96)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGG
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            4678888888888888887775

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=86.94  E-value=0.35  Score=31.50  Aligned_cols=26  Identities=23%  Similarity=0.492  Sum_probs=21.7

Q ss_pred             CeeeeccccccccchHHHHHhhcccchH
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLRGKKHK   90 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~GKKHK   90 (179)
                      ..+.|.+|..+|....+|..|++  -|.
T Consensus        31 kp~~C~~C~k~F~~~~~L~~H~~--~Ht   56 (60)
T 4gzn_C           31 RPRSCPECGKCFRDQSEVNRHLK--VHQ   56 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGG--GGS
T ss_pred             cCeECCCCCCCcCCHHHHHHHhC--ccC
Confidence            46899999999999999999984  453

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=86.71  E-value=0.33  Score=31.41  Aligned_cols=23  Identities=17%  Similarity=0.492  Sum_probs=21.2

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        64 ~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           64 KPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CceECCCccchhCCHHHHHHHHH
Confidence            56899999999999999999985

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=86.48  E-value=0.4  Score=31.08  Aligned_cols=23  Identities=30%  Similarity=0.676  Sum_probs=17.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        63 ~~~~C~~C~~~f~~~~~l~~H~~   85 (96)
T 2dmd_A           63 RPFKCQICPYASRNSSQLTVHLR   85 (96)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHH
Confidence            35778888888888888888874

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=86.40  E-value=0.37  Score=30.53  Aligned_cols=23  Identities=26%  Similarity=0.608  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        14 k~~~C~~C~~~f~~~~~l~~H~~   36 (86)
T 1x6h_A           14 KPYACSHCDKTFRQKQLLDMHFK   36 (86)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999985

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=86.15  E-value=0.41  Score=26.23  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.1

Q ss_pred             Ceeeec--cccccccchHHHHHhhc
Q 043013           63 MHWSCA--LCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCa--lCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.  .|...|.+...|..|+.
T Consensus         5 k~~~C~~~~C~k~f~~~~~L~~H~~   29 (38)
T 1bhi_A            5 KPFLCTAPGCGQRFTNEDHLAVHKH   29 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHH
T ss_pred             cceECCCCCCCcccCCHHHHHHHHH
Confidence            358899  59999999999999974

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=85.92  E-value=0.37  Score=31.34  Aligned_cols=20  Identities=20%  Similarity=0.652  Sum_probs=11.2

Q ss_pred             eeeccccccccchHHHHHhh
Q 043013           65 WSCALCQVSSTSKRNLDEHL   84 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL   84 (179)
                      +.|.+|...|.+...|..|+
T Consensus         4 ~~C~~C~k~f~~~~~L~~H~   23 (88)
T 1llm_C            4 FQCRICMRNFSRSDHLTTHI   23 (88)
T ss_dssp             EECTTTCCEESCHHHHHHHH
T ss_pred             CcCCCCCCccCCHHHHHHHH
Confidence            45555555555555555554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=85.75  E-value=0.63  Score=31.29  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=22.7

Q ss_pred             CcCCCeeeeccccccccchHHHHHhhc
Q 043013           59 SKKPMHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        59 ~K~~~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ......+.|..|.+.|.....|..|++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r   34 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEA   34 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHH
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhh
Confidence            344456889999999999999999974

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=85.64  E-value=0.44  Score=30.41  Aligned_cols=23  Identities=22%  Similarity=0.599  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~   55 (90)
T 1a1h_A           33 KPFQCRICMRNFSRSDHLTTHIR   55 (90)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=85.38  E-value=0.75  Score=30.40  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=15.3

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~   38 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHER   38 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHH
Confidence            35667777777777777777663

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=85.36  E-value=0.41  Score=31.17  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      +...|.+|..+|.....|..|++
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~   25 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRR   25 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCEeCCHHHHHHHHH
Confidence            35789999999999999999974

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=85.30  E-value=0.39  Score=31.28  Aligned_cols=23  Identities=22%  Similarity=0.572  Sum_probs=18.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|+.
T Consensus        74 ~~~~C~~C~~~f~~~~~l~~H~~   96 (100)
T 2ebt_A           74 KPFQCGVCNRSFSRSDHLALHMK   96 (100)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CCeECCCCcCccCCHHHHHHHHH
Confidence            35788889888888888888874

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=84.95  E-value=1.1  Score=27.91  Aligned_cols=26  Identities=19%  Similarity=0.356  Sum_probs=21.0

Q ss_pred             cCCCeeeecc--ccccccchHHHHHhhc
Q 043013           60 KKPMHWSCAL--CQVSSTSKRNLDEHLR   85 (179)
Q Consensus        60 K~~~eWsCal--Cqvt~TSE~~L~nHL~   85 (179)
                      .....+.|..  |...|.+...|..|+.
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~   40 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTR   40 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHH
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHH
Confidence            3445788988  9999999999998874

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=84.65  E-value=0.44  Score=31.95  Aligned_cols=23  Identities=26%  Similarity=0.648  Sum_probs=16.6

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        93 ~~~~C~~C~~~f~~~~~l~~H~~  115 (124)
T 2dlq_A           93 MPYKCSSCSQQFMQKKDLQSHMI  115 (124)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCccchhCCHHHHHHHHH
Confidence            35777777777777777777764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.35  E-value=0.45  Score=32.10  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             CeeeeccccccccchHHHHHhhcc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLRG   86 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~G   86 (179)
                      ..+.|.+|...|.+..+|..|++-
T Consensus        79 ~~~~C~~C~k~f~~~~~L~~H~~~  102 (115)
T 2dmi_A           79 KVLKCMYCGHSFESLQDLSVHMIK  102 (115)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             cceECCCCCCccCCHHHHHHHHHH
Confidence            468999999999999999999854

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=84.31  E-value=0.33  Score=37.85  Aligned_cols=27  Identities=22%  Similarity=0.445  Sum_probs=23.2

Q ss_pred             eeeeccccccccchHHHHHhhcccchHHHH
Q 043013           64 HWSCALCQVSSTSKRNLDEHLRGKKHKAKE   93 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~GKKHKAk~   93 (179)
                      .-.|.+|.+.|.   +|..|+.+.+|+.-+
T Consensus        87 ~GyCE~C~~~y~---~l~~H~~s~~Hr~fa  113 (144)
T 4f9c_B           87 KGYCECCLQKYE---DLETHLLSEQHRNFA  113 (144)
T ss_dssp             -CEETTTTEECS---CHHHHHHSHHHHHHH
T ss_pred             CCCccchhhhhh---hHHHHcCCHHHHHHH
Confidence            579999999998   599999999999654

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=84.05  E-value=0.58  Score=31.38  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=11.2

Q ss_pred             eeeeccccccccchHHHHHhh
Q 043013           64 HWSCALCQVSSTSKRNLDEHL   84 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL   84 (179)
                      .+.|.+|...|.+...|..|+
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~   27 (124)
T 2dlq_A            7 GVECPTCHKKFLSKYYLKVHN   27 (124)
T ss_dssp             SCCCTTTCCCCSSHHHHHHHH
T ss_pred             CCCCCCCCCcCCCHHHHHHHH
Confidence            345555555555555555554

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.89  E-value=0.57  Score=28.11  Aligned_cols=23  Identities=30%  Similarity=0.665  Sum_probs=20.3

Q ss_pred             Ceeeecc--ccccccchHHHHHhhc
Q 043013           63 MHWSCAL--CQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCal--Cqvt~TSE~~L~nHL~   85 (179)
                      ..+.|..  |..+|+....|..|++
T Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~r   32 (38)
T 2eln_A            8 ILLKCPTDGCDYSTPDKYKLQAHLK   32 (38)
T ss_dssp             CCEECSSSSCCCEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHH
Confidence            4589986  9999999999999984

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=83.77  E-value=1.1  Score=29.12  Aligned_cols=26  Identities=31%  Similarity=0.487  Sum_probs=19.1

Q ss_pred             cCCCeeeecc--ccccccchHHHHHhhc
Q 043013           60 KKPMHWSCAL--CQVSSTSKRNLDEHLR   85 (179)
Q Consensus        60 K~~~eWsCal--Cqvt~TSE~~L~nHL~   85 (179)
                      .....+.|.+  |...|.+...|..|++
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~   38 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLR   38 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHH
Confidence            3445677886  8888888888888874

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.72  E-value=0.53  Score=31.48  Aligned_cols=23  Identities=13%  Similarity=0.467  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|++
T Consensus        64 ~~~~C~~C~~~f~~~~~l~~H~~   86 (110)
T 2csh_A           64 KPYECNICAKRFMWRDSFHRHVT   86 (110)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCeeCCCCcchhcCHHHHHHHHH
Confidence            46899999999999999999984

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.56  E-value=0.45  Score=32.06  Aligned_cols=28  Identities=18%  Similarity=0.351  Sum_probs=23.3

Q ss_pred             CCeeeecccccccc-chHHHHHhhcccchHH
Q 043013           62 PMHWSCALCQVSST-SKRNLDEHLRGKKHKA   91 (179)
Q Consensus        62 ~~eWsCalCqvt~T-SE~~L~nHL~GKKHKA   91 (179)
                      ...+.|.+|...|. +...|..|+  +.|..
T Consensus        22 ~~~~~C~~C~k~f~~~~~~L~~H~--~~h~~   50 (98)
T 2gqj_A           22 RGEAVCPTCNVVTRKTLVGLKKHM--EVCQK   50 (98)
T ss_dssp             TSCCCCTTTCCCCSSCSHHHHHHH--HHHHH
T ss_pred             CCCcCCCCCCCChhhhHHHHHHHH--HHHcC
Confidence            35789999999999 999999998  44543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=83.30  E-value=0.54  Score=32.57  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=16.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|..+|.....|..|++
T Consensus        55 k~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           55 QVFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             SSEECTTSSCEESSHHHHHHHHH
T ss_pred             CccCCCCCCCEeCCHHHHHHhCc
Confidence            35677777777777777777763

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=83.28  E-value=0.45  Score=31.53  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=15.7

Q ss_pred             eeeeccccccccchHHHHHhh
Q 043013           64 HWSCALCQVSSTSKRNLDEHL   84 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL   84 (179)
                      .+.|.+|...|.+...|..|+
T Consensus        73 ~~~C~~C~~~f~~~~~L~~H~   93 (106)
T 2ee8_A           73 PFKCQECGKGFCQSRTLAVHK   93 (106)
T ss_dssp             TTSCSSSCCCCSSHHHHHHHH
T ss_pred             CeECCCcCCcccCHHHHHHHH
Confidence            467777777777777777776

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.25  E-value=0.56  Score=31.59  Aligned_cols=23  Identities=17%  Similarity=0.439  Sum_probs=21.2

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        18 ~~~~C~~C~k~f~~~~~L~~H~~   40 (115)
T 2dmi_A           18 SKFRCKDCSAAYDTLVELTVHMN   40 (115)
T ss_dssp             CSEEBSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCccCchhcCHHHHHHHHH
Confidence            46899999999999999999986

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.05  E-value=0.76  Score=26.27  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             Ceeeec--cccccccchHHHHHhhc
Q 043013           63 MHWSCA--LCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCa--lCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.  .|...|.+...|..|+.
T Consensus        11 k~~~C~~~~C~k~f~~~~~L~~H~~   35 (48)
T 2ent_A           11 KPFACTWPGCGWRFSRSDELSRHRR   35 (48)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCCCccCCHHHHHHHHH
Confidence            468898  89999999999999985

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.72  E-value=0.43  Score=32.14  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|++
T Consensus        53 ~~~~C~~C~k~F~~~~~L~~H~~   75 (98)
T 2gqj_A           53 DALKCQHCRKQFKSKAGLNYHTM   75 (98)
T ss_dssp             HHHSCSSSCCCCSCHHHHHHHHH
T ss_pred             CCEECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999974

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=81.52  E-value=0.69  Score=30.02  Aligned_cols=24  Identities=13%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             CeeeeccccccccchHHHHHhhcc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLRG   86 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~G   86 (179)
                      ..+.|.+|...|.+...|..|+.-
T Consensus        30 ~~~~C~~C~k~f~~~~~L~~H~~~   53 (88)
T 1llm_C           30 KPFACDICGRKFARSDERKRHRDI   53 (88)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHH
Confidence            458999999999999999999853

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=80.74  E-value=0.93  Score=28.78  Aligned_cols=22  Identities=32%  Similarity=0.650  Sum_probs=13.1

Q ss_pred             eeeecc--ccccccchHHHHHhhc
Q 043013           64 HWSCAL--CQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCal--Cqvt~TSE~~L~nHL~   85 (179)
                      .+.|.+  |+..|.+...|..|+.
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~   28 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLR   28 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHT
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHH
Confidence            455666  6666666666666653

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=80.69  E-value=0.94  Score=30.64  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=18.9

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~   55 (124)
T 1ubd_C           33 RVHVCAECGKAFVESSKLKRHQL   55 (124)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            45788888888888888888875

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=80.56  E-value=0.89  Score=30.31  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=19.3

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|++
T Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~   87 (119)
T 2jp9_A           65 KPFQCKTCQRKFSRSDHLKTHTR   87 (119)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             CCccCCccCchhCCHHHHHHHHH
Confidence            45889999999999999988874

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=80.37  E-value=0.82  Score=30.59  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+...|..|+.
T Consensus        15 ~~~~C~~C~~~f~~~~~l~~H~~   37 (107)
T 1wjp_A           15 EVYQCRLCNAKLSSLLEQGSHER   37 (107)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHH
Confidence            35789999999999999988875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=80.32  E-value=0.92  Score=28.37  Aligned_cols=23  Identities=35%  Similarity=0.664  Sum_probs=20.2

Q ss_pred             Ceeeecc--ccccccchHHHHHhhc
Q 043013           63 MHWSCAL--CQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCal--Cqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+  |...|.+..+|..|+.
T Consensus        37 ~~~~C~~~~C~k~f~~~~~L~~H~~   61 (79)
T 2dlk_A           37 KSFSCPEPACGKSFNFKKHLKEHMK   61 (79)
T ss_dssp             CCEECSCTTTCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCCcCccCCHHHHHHHHH
Confidence            4688998  9999999999999985

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=80.19  E-value=0.67  Score=31.04  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=18.8

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|...|.+..+|..|++
T Consensus        68 ~~~~C~~C~~~f~~~~~L~~H~~   90 (107)
T 1wjp_A           68 KKLTCLECMRTFKSSFSIWRHQV   90 (107)
T ss_dssp             GGGEEGGGTEECSSHHHHHHHHH
T ss_pred             CCccCccccchhCCHHHHHHHHH
Confidence            35788888888888888888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.77
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	96.82
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	93.5
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	93.31
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	92.63
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	92.56
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	92.15
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	92.13
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	91.95
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	91.92
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	91.76
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	91.56
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.77
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	89.49
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	88.6
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	88.22
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	86.59
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	85.56
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	85.04
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	84.5
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	80.87

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4.6e-06  Score=57.45  Aligned_cols=35  Identities=29%  Similarity=0.446  Sum_probs=32.7

Q ss_pred             eeeeccccccccchHHHHHhhcccchHHHHHHhHH
Q 043013           64 HWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLER   98 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL~a   98 (179)
                      .|.|-.|.+.|.|+..|++|+.+|+||-.+.+|+.
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             EEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            59999999999999999999999999999988854

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.82  E-value=0.00032  Score=46.93  Aligned_cols=32  Identities=22%  Similarity=0.385  Sum_probs=28.9

Q ss_pred             CeeeeccccccccchHHHHHhhcccchHHHHH
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLRGKKHKAKEE   94 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~GKKHKAk~a   94 (179)
                      +...|.||+++|.|...-++|..||+|.-++.
T Consensus        20 ~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk   51 (55)
T d1zu1a2          20 RSKCCPVCNMTFSSPVVAESHYIGKTHIKNLR   51 (55)
T ss_dssp             TTTEETTTTEECSSHHHHHHHHTSHHHHHHHH
T ss_pred             chhhhhhhhcccCCHHHHHHHhhhhHHHHHHH
Confidence            34589999999999999999999999998864

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=93.50  E-value=0.019  Score=39.86  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=31.3

Q ss_pred             eeeeccccccccchHHHHHhhcccchHHHHHHhH
Q 043013           64 HWSCALCQVSSTSKRNLDEHLRGKKHKAKEEGLE   97 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~GKKHKAk~aaL~   97 (179)
                      +-.|.+|.+...||+.-..|.+|+||..|+..+-
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf   65 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYM   65 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7799999999999999999999999999987553

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.31  E-value=0.021  Score=34.01  Aligned_cols=27  Identities=30%  Similarity=0.571  Sum_probs=23.2

Q ss_pred             CCeeeeccccccccchHHHHHhhcccchH
Q 043013           62 PMHWSCALCQVSSTSKRNLDEHLRGKKHK   90 (179)
Q Consensus        62 ~~eWsCalCqvt~TSE~~L~nHL~GKKHK   90 (179)
                      .+++.|.+|++.|+...+|..|++  .|-
T Consensus         5 ekPy~C~~C~k~F~~~~~L~~H~r--~Ht   31 (35)
T d1srka_           5 KRPFVCRICLSAFTTKANCARHLK--VHT   31 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHG--GGT
T ss_pred             CccccCCCCCCcccChHHHHHHcc--ccC
Confidence            357899999999999999999984  563

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=92.63  E-value=0.027  Score=32.14  Aligned_cols=22  Identities=23%  Similarity=0.646  Sum_probs=20.2

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ++.|.+|++.|+...+|..|++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCchHcccccC
Confidence            5789999999999999999984

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.021  Score=32.78  Aligned_cols=22  Identities=18%  Similarity=0.581  Sum_probs=20.3

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      .+.|.+|+++|+...+|..|++
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r   23 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIK   23 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHH
T ss_pred             CEECCcCCCeecchHHhhhhcC
Confidence            5789999999999999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.15  E-value=0.032  Score=33.05  Aligned_cols=23  Identities=17%  Similarity=0.492  Sum_probs=21.2

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      +++.|.+|+..|+...+|..|+.
T Consensus         7 kP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           7 KPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCEeCCCCcccccchHHHHHHcc
Confidence            57899999999999999999975

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.035  Score=32.60  Aligned_cols=27  Identities=33%  Similarity=0.743  Sum_probs=24.9

Q ss_pred             eeeeccccccccchHHHHHhhcccchH
Q 043013           64 HWSCALCQVSSTSKRNLDEHLRGKKHK   90 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~GKKHK   90 (179)
                      ++.|..|+.+|-.+.+|-.|+.+|-|.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~   27 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHS   27 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhc
Confidence            368999999999999999999999885

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.026  Score=36.55  Aligned_cols=31  Identities=26%  Similarity=0.530  Sum_probs=28.6

Q ss_pred             eeeccccccccchHHHHHhhcccchHHHHHH
Q 043013           65 WSCALCQVSSTSKRNLDEHLRGKKHKAKEEG   95 (179)
Q Consensus        65 WsCalCqvt~TSE~~L~nHL~GKKHKAk~aa   95 (179)
                      --|.+|.+.|++....+.|+-.+.|=+++..
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~   37 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIFSKQHISKVRE   37 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHH
T ss_pred             ccCcccceeeeeecchHhhhhhHHHHHHHHH
Confidence            3599999999999999999999999999864

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.049  Score=36.27  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=27.3

Q ss_pred             Ceeeecccccccc--chHHHHHhhcccchHHHHHHh
Q 043013           63 MHWSCALCQVSST--SKRNLDEHLRGKKHKAKEEGL   96 (179)
Q Consensus        63 ~eWsCalCqvt~T--SE~~L~nHL~GKKHKAk~aaL   96 (179)
                      +...|..|..-+|  |-+.=..|++|++|+.+.+..
T Consensus         2 pryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~y   37 (61)
T d2vrda1           2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (61)
T ss_dssp             CSCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHH
T ss_pred             CchhhhhhcchhccCChhHHHHHhccHHHHHHHHHH
Confidence            4578999999997  344557899999999998643

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.76  E-value=0.043  Score=32.48  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      +++.|..|..+|+...+|..|+.
T Consensus        10 KPy~C~~C~k~F~~~~~L~~H~r   32 (37)
T d1p7aa_          10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             cCeEeCCCCCEecCHHHHHHHHh
Confidence            57899999999999999999973

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.56  E-value=0.044  Score=31.23  Aligned_cols=23  Identities=22%  Similarity=0.599  Sum_probs=20.7

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ++..|.+|.+.|+....|..|++
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCC
Confidence            35789999999999999999974

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.064  Score=32.43  Aligned_cols=24  Identities=17%  Similarity=0.450  Sum_probs=21.7

Q ss_pred             CCeeeeccccccccchHHHHHhhc
Q 043013           62 PMHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        62 ~~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      -+.+.|..|++.|+...+|..|++
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r   26 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIK   26 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCccCCCCCCCcCChHHhhccCc
Confidence            357899999999999999999975

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.49  E-value=0.084  Score=31.01  Aligned_cols=23  Identities=26%  Similarity=0.608  Sum_probs=21.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ....|.+|..+|+...+|..|+.
T Consensus         7 kPy~C~~C~k~F~~~~~L~~H~r   29 (36)
T d1x6ha2           7 KPYACSHCDKTFRQKQLLDMHFK   29 (36)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCCCcCCHhHHHHhCc
Confidence            47899999999999999999984

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.60  E-value=0.11  Score=30.42  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|..|.++|+..++|..|++
T Consensus         6 kpy~C~~Cgk~F~~~~~L~~H~r   28 (33)
T d1x6ea1           6 KPYGCVECGKAFSRSSILVQHQR   28 (33)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCCCEeCchHHhHhhcc
Confidence            57899999999999999999974

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.22  E-value=0.11  Score=30.66  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|..|.++|....+|..|.+
T Consensus        11 kpy~C~~CgK~F~~~s~L~~H~r   33 (38)
T d2cota2          11 RRYKCDECGKSFSHSSDLSKHRR   33 (38)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCEecCCCCceeeCHHHHHHhCc
Confidence            46889999999999999999975

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.59  E-value=0.17  Score=28.51  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=19.8

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      +..|..|.++|+..+.|..|.+
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQR   23 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCcc
Confidence            4679999999999999999974

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.56  E-value=0.17  Score=30.60  Aligned_cols=23  Identities=22%  Similarity=0.538  Sum_probs=20.1

Q ss_pred             CeeeeccccccccchHHHHHhhc
Q 043013           63 MHWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        63 ~eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      ..+.|.+|..+|+....|..|++
T Consensus        29 kpy~C~~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1          29 RPYGCGVCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             CSEECTTTSCEESSSHHHHHHHT
T ss_pred             cCCcCCCcCCEecCHHHHHHHHh
Confidence            46899999999999999999974

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.04  E-value=0.2  Score=28.73  Aligned_cols=22  Identities=36%  Similarity=0.703  Sum_probs=20.0

Q ss_pred             eeeecc--ccccccchHHHHHhhc
Q 043013           64 HWSCAL--CQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCal--Cqvt~TSE~~L~nHL~   85 (179)
                      .+.|..  |.+.|+...+|..|++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r   25 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLR   25 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHH
T ss_pred             CeeCCCCCCCceECChhHhhhhcC
Confidence            478999  9999999999999984

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.50  E-value=0.25  Score=28.24  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=20.0

Q ss_pred             eeeecc--ccccccchHHHHHhhc
Q 043013           64 HWSCAL--CQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCal--Cqvt~TSE~~L~nHL~   85 (179)
                      .+.|.+  |.++|+...+|..|++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r   25 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVR   25 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHH
T ss_pred             CccCCCCCCCceECcHHHcCcccc
Confidence            578988  9999999999999984

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.87  E-value=0.41  Score=27.97  Aligned_cols=22  Identities=23%  Similarity=0.572  Sum_probs=19.6

Q ss_pred             eeeeccccccccchHHHHHhhc
Q 043013           64 HWSCALCQVSSTSKRNLDEHLR   85 (179)
Q Consensus        64 eWsCalCqvt~TSE~~L~nHL~   85 (179)
                      -+.|++||-+|...-.|.-|+-
T Consensus         4 vftcs~cqe~f~rrmelr~hmv   25 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMV   25 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             eEEeHHHHHHHHHHHhheeeee
Confidence            4789999999999999998874