Citrus Sinensis ID: 043077

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQILALQRGQHQA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MVGTSLQQELNNFVRSLREQGILDHNFDTLsriqndqsplFVTEVINLFTRDAENAITQArdslqepsvdYDKLIAAVHQLRgasssiggCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQILALQRGQHQA
Flexible Loop (DISEMBL)
MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQArdslqepsVDYDKLIAAVHQLrgasssiggcRVALACRELrsaiddkdkeRCNEILQRIVEEYQTLHVNLAHILNLGRQILALQRGQHQA
Low Complexity Region (SEG)
MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQILALQRGQHQA
Disordered region (IsUnstruct)
************FVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQ********SVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQILAL*******
Disordered Region (DISOPRED)
********ELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQI**********
Disordered Region (DISEMBL)
MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQILA********
Disordered Region (DISPRO)
*VGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQILALQRG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQILALQRGQHQA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q8L9T7	157	Histidine-containing phos	yes	no	0.94	0.898	0.366	2e-21
Q9SAZ5	155	Histidine-containing phos	no	no	0.906	0.877	0.401	2e-20
Q9ZNV8	156	Histidine-containing phos	no	no	0.906	0.871	0.372	2e-20
Q6VAK4	149	Histidine-containing phos	no	no	0.986	0.993	0.322	7e-18
Q9ZNV9	154	Histidine-containing phos	no	no	0.906	0.883	0.367	1e-16
Q9LU15	127	Histidine-containing phos	no	no	0.766	0.905	0.330	9e-14
Q9SSC9	154	Histidine-containing phos	no	no	0.853	0.831	0.361	2e-07

>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 85/142 (59%), Gaps = 1/142 (0%)

Query: 1   MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQA 60
           +V   LQ++  +++ SL +QG LD+ F  L ++Q++ +P FV EV++LF  D    I   
Sbjct: 4   IVVAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTM 63

Query: 61  RDSLQEP-SVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRI 119
             SL+ P +VD+ ++ + VHQL+G+SSS+G  RV   C   +   D +++E C   LQ++
Sbjct: 64  SISLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQV 123

Query: 120 VEEYQTLHVNLAHILNLGRQIL 141
             EY+ L   L  + NL +QIL
Sbjct: 124 DYEYKMLKTKLQDLFNLEKQIL 145

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 80/137 (58%), Gaps = 1/137 (0%)

Query: 6   LQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAIT-QARDSL 64
           LQ+   +F  SL  QG LD  F  L ++Q++ SP FV EV+ LF  D E  I+  AR   
Sbjct: 8   LQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARALD 67

Query: 65  QEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQ 124
           Q  +VD+  + ++VHQL+G+SSS+G  RV   C  L+   D ++ E C   LQ++  EY+
Sbjct: 68  QTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIEYK 127

Query: 125 TLHVNLAHILNLGRQIL 141
           TL   L  + NL +QI+
Sbjct: 128 TLKAKLQDLFNLEQQIV 144

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 1/137 (0%)

Query: 6   LQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQ 65
           LQ++  ++  SL +QG LD  F  L ++Q+D SP FV+EV++LF  D    I+    +L 
Sbjct: 8   LQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARALD 67

Query: 66  EP-SVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQ 124
              +VD+ ++ A+VHQL+G+SSS+G  RV   C   +   + K+ E C   LQ++  EY+
Sbjct: 68  TTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIEYK 127

Query: 125 TLHVNLAHILNLGRQIL 141
            L   L  + NL +QI+
Sbjct: 128 ALKTKLQDMFNLEKQII 144

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 1/149 (0%)

Query: 1   MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQ-SPLFVTEVINLFTRDAENAITQ 59
           M   +L+ +L   + S+  QG++D  F  L  +Q++  +P FV+EV+ LF  DA+  I +
Sbjct: 1   MAAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINE 60

Query: 60  ARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRI 119
               L++P V++DK+ A VHQL+G+S+S+G  +V   C + R    DK ++ C   L  +
Sbjct: 61  IATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVV 120

Query: 120 VEEYQTLHVNLAHILNLGRQILALQRGQH 148
             ++  L      +L L +QI A    Q 
Sbjct: 121 RNDFYDLRNKFQTMLQLEQQIQAYDPKQQ 149

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 83/136 (61%)

Query: 7   QQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQE 66
           Q+ L ++ +SL  +GILD  F  L ++Q++ +P FV++V+ LF +D++  +     SL +
Sbjct: 7   QKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQ 66

Query: 67  PSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTL 126
             VD+ K+   VHQL+G+SSSIG  RV  AC   RS  + ++ E C+  LQ++ +EY  +
Sbjct: 67  QVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLV 126

Query: 127 HVNLAHILNLGRQILA 142
              L  +  L +QI+A
Sbjct: 127 KNRLETLFKLEQQIVA 142

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%)

Query: 20  QGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVH 79
           QG LD  F  L  +Q+D +P FV EV  L+ +D+   I     +L+  S D+++L + +H
Sbjct: 9   QGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMH 68

Query: 80  QLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHIL 134
           Q +G+S+SIG  +V   C   R      + E C    Q++ +E+ TL   L H  
Sbjct: 69  QFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKKLEHYF 123

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 2/130 (1%)

Query: 6   LQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQ 65
           LQ ++N  + SL  QG+LD  F  L ++Q++ SP FV +VIN++  ++E  +   R  L 
Sbjct: 9   LQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRLLLM 68

Query: 66  EPSV-DYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQ 124
           +    DY K+   ++QL G+SSSIG  RV   C   RSA +  ++  C   L+ +  EY 
Sbjct: 69  DREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEHEYH 128

Query: 125 TLHVNLAHIL 134
            L  N+ H L
Sbjct: 129 YLK-NMMHEL 137

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
255576355	152	Histidine-containing phosphotransfer pro	0.946	0.934	0.436	4e-24
224103049	245	histidine phosphotransfer protein [Popul	0.833	0.510	0.452	1e-22
255585733	159	Histidine-containing phosphotransfer pro	0.993	0.937	0.382	4e-22
374096131	146	histidine-containing phosphotransfer pro	0.96	0.986	0.402	5e-22
255542502	152	Histidine-containing phosphotransfer pro	0.913	0.901	0.379	1e-20
351726317	146	uncharacterized protein LOC100306665 [Gl	0.913	0.938	0.372	3e-20
4156243	152	ATHP2 [Arabidopsis thaliana]	0.933	0.921	0.404	4e-20
192910810	149	histidine-containing phosphotransfer pro	0.986	0.993	0.364	4e-20
52673258	152	putative histidine-containing phosphotra	0.94	0.927	0.354	7e-20
18379097	157	histidine-containing phosphotransfer pro	0.94	0.898	0.366	1e-19

>gi|255576355|ref|XP_002529070.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis] gi|223531482|gb|EEF33314.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis]

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 89/142 (62%)

Query: 1   MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQA 60
           MVG  L  +   FVR+L++QGILD++FD +  I+   +P FV EVI++F  DA+N +++ 
Sbjct: 1   MVGIDLMHQQRLFVRNLKQQGILDNHFDQVLEIRTIDNPRFVLEVISMFLNDADNCVSEL 60

Query: 61  RDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIV 120
              L E  VDY +++   HQLRG+S+SIG   VA+A RELR A DD D+ RC     ++ 
Sbjct: 61  NRLLNEAVVDYTQVVNYCHQLRGSSASIGARLVAVASRELRLATDDMDQHRCLVAFDKLK 120

Query: 121 EEYQTLHVNLAHILNLGRQILA 142
           +EYQ L  N   I  + R I+A
Sbjct: 121 DEYQNLKNNFNIITQIERTIVA 142

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103049|ref|XP_002312903.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222849311|gb|EEE86858.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 1/126 (0%)

Query: 1   MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQA 60
           M G ++ +E  NFV++L EQGILD  FD +  +   ++P FV +++  F  DAEN+I   
Sbjct: 1   MGGPNIWEEQRNFVKNLHEQGILDSRFDEILDLPR-ENPQFVIDLVTKFCSDAENSIAAL 59

Query: 61  RDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIV 120
                EP ++Y K+I   HQ++GASS IGG R+ALA RELR A +DKDK+RC     +  
Sbjct: 60  IRYHNEPDINYPKVIDRAHQIKGASSCIGGHRMALASRELRYACEDKDKDRCFAAFCKTK 119

Query: 121 EEYQTL 126
           +EYQ L
Sbjct: 120 DEYQIL 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585733|ref|XP_002533548.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis] gi|223526584|gb|EEF28838.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis]

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 92/149 (61%)

Query: 1   MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQA 60
           M   SL+ +LNN V+S+ ++G+LD  F  +  +Q++ +P F+ EVI  F  DAE  IT+ 
Sbjct: 1   MALPSLKAQLNNSVQSMFDEGMLDSQFAQIQALQDESNPNFIAEVITSFCTDAERIITEL 60

Query: 61  RDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIV 120
             ++ + +V++  L + VHQL+G+SSSIG  R+ LAC +L+ A DD++K  C + L  I 
Sbjct: 61  SKNMTQQNVNFSNLESCVHQLKGSSSSIGAQRLKLACADLQQAFDDQNKAGCLQALNIIT 120

Query: 121 EEYQTLHVNLAHILNLGRQILALQRGQHQ 149
            EY  L      ++ L ++ILA++  Q Q
Sbjct: 121 REYFLLRGKFETLIQLEKRILAIEAKQQQ 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374096131|gb|AEY84978.1| histidine-containing phosphotransfer protein [Wolffia australiana]

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 85/144 (59%)

Query: 1   MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQA 60
           M   +++ +LN  V S+  +G+LD  F+ L  +Q++ +P FV EVI LF  DAE  I + 
Sbjct: 1   MAAAAIRDQLNGLVNSMFAEGLLDGQFNQLQMLQDETNPGFVAEVITLFCEDAERLIKEL 60

Query: 61  RDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIV 120
              L +P VDY K+ A VHQL+G+S+S+G   + LAC +LR   + K+KE C   L  I 
Sbjct: 61  STLLDQPVVDYFKVDAYVHQLKGSSASVGAQYIKLACVKLRQFCEAKNKEGCAHALNLIR 120

Query: 121 EEYQTLHVNLAHILNLGRQILALQ 144
            EY  L V L  ++ L R+I A +
Sbjct: 121 HEYYRLKVKLEMMVQLERRIQAYE 144

Source: Wolffia australiana

Species: Wolffia australiana

Genus: Wolffia

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542502|ref|XP_002512314.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis] gi|223548275|gb|EEF49766.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 85/137 (62%)

Query: 6   LQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQ 65
           LQ++L ++  SL  +G LD  F+ L ++Q++ +P FV EV++LF  D+E  + +   +L 
Sbjct: 7   LQRQLVDYTASLFHEGFLDDQFNQLQQLQDESNPDFVVEVVSLFFEDSERLLNELAKALD 66

Query: 66  EPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQT 125
           + SVD+ ++ A VHQL+G+SSSIG  RV   C   R+  D+++ E C + LQ++  EY  
Sbjct: 67  QKSVDFKRIDAHVHQLKGSSSSIGAQRVQKVCITFRNCCDERNAEGCLKCLQQVKHEYSL 126

Query: 126 LHVNLAHILNLGRQILA 142
           +   L  +  L RQ+LA
Sbjct: 127 IKTKLETLFKLERQVLA 143

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726317|ref|NP_001238402.1| uncharacterized protein LOC100306665 [Glycine max] gi|255629219|gb|ACU14954.1| unknown [Glycine max]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 87/137 (63%)

Query: 6   LQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQ 65
           LQ++L ++  SL  +G LD  F+ L ++Q++ +P FV EV+ LF  DAE  + +   +L 
Sbjct: 7   LQRQLVDYTASLFHEGFLDDQFNQLQQLQDESNPDFVVEVVTLFFEDAERLLNELTKTLG 66

Query: 66  EPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQT 125
           +PS+D+ +L A VHQL+G+SSSIG  R+   C   R++ ++++ E C + LQ++ +EY  
Sbjct: 67  QPSIDFKRLDAHVHQLKGSSSSIGAQRIHRVCISFRNSCEEQNVEGCLKNLQQVKQEYSL 126

Query: 126 LHVNLAHILNLGRQILA 142
           +   L  +  + +QILA
Sbjct: 127 VKSKLETLFRMEQQILA 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4156243|dbj|BAA37111.1| ATHP2 [Arabidopsis thaliana]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 2   VGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAIT-QA 60
           +GT LQ+   +F  SL  QG LD  F  L ++Q++ SP FV EV+ LF  D E  I+  A
Sbjct: 1   MGTKLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMA 60

Query: 61  RDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIV 120
           R   Q  +VD+  + ++VHQL+G+SSS+G  RV   C  L+   D ++ E C   LQ++ 
Sbjct: 61  RALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVD 120

Query: 121 EEYQTLHVNLAHILNLGRQIL 141
            EY+TL   L  + NL +QI+
Sbjct: 121 IEYKTLKAKLQDLFNLEQQIV 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910810|gb|ACF06513.1| histidine-containing phosphotransfer protein Zmhp2 chain D [Elaeis guineensis]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 82/148 (55%)

Query: 1   MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQA 60
           M  T+L+++LN  V S+  +G+LD  F  L  +Q+  +P FV EV+ LF  D+E  +T+ 
Sbjct: 1   MAATALKEQLNGLVNSMFAEGLLDEQFQQLQMLQDGSNPGFVAEVVTLFCEDSERILTEL 60

Query: 61  RDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIV 120
              + +  VDY K+ A VHQL+G+SSS+G   V LAC + R   ++ +KE C   L  + 
Sbjct: 61  TKLMDQALVDYSKVDAYVHQLKGSSSSVGAQNVKLACIQFRQFCEENNKEGCVRALNVVK 120

Query: 121 EEYQTLHVNLAHILNLGRQILALQRGQH 148
            EY  L      +L L  +I A +  Q 
Sbjct: 121 HEYYRLRSKFETMLQLESRIQAYENKQQ 148

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52673258|emb|CAH56501.1| putative histidine-containing phosphotransfer protein 3a [Populus x canadensis]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 85/141 (60%)

Query: 2   VGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQAR 61
           V + LQ++L +F+  L  +G +D  F  L ++Q++ SP FV EV++LF  D E  ++   
Sbjct: 3   VVSQLQRQLADFLAPLYREGFVDDQFTQLQKLQDESSPDFVIEVVSLFFEDCEKLVSNMA 62

Query: 62  DSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVE 121
            +L++  VD+ ++ + VHQL+G+SSSIG  R+   C   ++  + +++E C   LQ++  
Sbjct: 63  KALEQQVVDFKQVDSHVHQLKGSSSSIGAARIKNVCVAFKTFCEAQNREGCLRCLQQVNH 122

Query: 122 EYQTLHVNLAHILNLGRQILA 142
           EY  L  NL  +  L RQI+A
Sbjct: 123 EYTQLKANLQTLFTLERQIVA 143

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18379097|ref|NP_563684.1| histidine-containing phosphotransfer protein 5 [Arabidopsis thaliana] gi|56749792|sp|Q8L9T7.2|AHP5_ARATH RecName: Full=Histidine-containing phosphotransfer protein 5 gi|7630189|dbj|BAA94764.1| HPt phosphotransmitter [Arabidopsis thaliana] gi|51970654|dbj|BAD44019.1| HPt phosphotransmitter (AHP5) [Arabidopsis thaliana] gi|51971731|dbj|BAD44530.1| HPt phosphotransmitter (AHP5) [Arabidopsis thaliana] gi|149944283|gb|ABR46184.1| At1g03430 [Arabidopsis thaliana] gi|332189449|gb|AEE27570.1| histidine-containing phosphotransfer protein 5 [Arabidopsis thaliana]

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 85/142 (59%), Gaps = 1/142 (0%)

Query: 1   MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQA 60
           +V   LQ++  +++ SL +QG LD+ F  L ++Q++ +P FV EV++LF  D    I   
Sbjct: 4   IVVAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTM 63

Query: 61  RDSLQEP-SVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRI 119
             SL+ P +VD+ ++ + VHQL+G+SSS+G  RV   C   +   D +++E C   LQ++
Sbjct: 64  SISLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQV 123

Query: 120 VEEYQTLHVNLAHILNLGRQIL 141
             EY+ L   L  + NL +QIL
Sbjct: 124 DYEYKMLKTKLQDLFNLEKQIL 145

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2020868	157	AHP5 "histidine-containing pho	0.94	0.898	0.366	3.9e-21
TAIR|locus:2093817	156	AHP2 "histidine-containing pho	0.906	0.871	0.372	7.2e-20
TAIR|locus:2175643	155	AHP3 "histidine-containing pho	0.906	0.877	0.394	7.2e-20
TAIR|locus:2089900	154	AHP1 "histidine-containing pho	0.906	0.883	0.367	1.2e-19
TAIR|locus:2016339	154	HP6 "histidine phosphotransfer	0.906	0.883	0.364	6.9e-15
UNIPROTKB|Q884X1	118	PSPTO_1965 "Hpt domain protein	0.666	0.847	0.237	1.4e-07
TAIR|locus:504955364	167	AT4G04402 "AT4G04402" [Arabido	0.913	0.820	0.311	6.1e-07

TAIR|locus:2020868 AHP5 "histidine-containing phosphotransfer factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 52/142 (36%), Positives = 85/142 (59%)

Query:     1 MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQA 60
             +V   LQ++  +++ SL +QG LD+ F  L ++Q++ +P FV EV++LF  D    I   
Sbjct:     4 IVVAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTM 63

Query:    61 RDSLQEP-SVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRI 119
               SL+ P +VD+ ++ + VHQL+G+SSS+G  RV   C   +   D +++E C   LQ++
Sbjct:    64 SISLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQV 123

Query:   120 VEEYQTLHVNLAHILNLGRQIL 141
               EY+ L   L  + NL +QIL
Sbjct:   124 DYEYKMLKTKLQDLFNLEKQIL 145

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;TAS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2093817 AHP2 "histidine-containing phosphotransmitter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 51/137 (37%), Positives = 81/137 (59%)

Query:     6 LQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQ 65
             LQ++  ++  SL +QG LD  F  L ++Q+D SP FV+EV++LF  D    I+    +L 
Sbjct:     8 LQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARALD 67

Query:    66 EP-SVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQ 124
                +VD+ ++ A+VHQL+G+SSS+G  RV   C   +   + K+ E C   LQ++  EY+
Sbjct:    68 TTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIEYK 127

Query:   125 TLHVNLAHILNLGRQIL 141
              L   L  + NL +QI+
Sbjct:   128 ALKTKLQDMFNLEKQII 144

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2175643 AHP3 "histidine-containing phosphotransmitter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 54/137 (39%), Positives = 80/137 (58%)

Query:     6 LQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSL- 64
             LQ+   +F  SL  QG LD  F  L ++Q++ SP FV EV+ LF  D E  I+    +L 
Sbjct:     8 LQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARALD 67

Query:    65 QEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQ 124
             Q  +VD+  + ++VHQL+G+SSS+G  RV   C  L+   D ++ E C   LQ++  EY+
Sbjct:    68 QTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIEYK 127

Query:   125 TLHVNLAHILNLGRQIL 141
             TL   L  + NL +QI+
Sbjct:   128 TLKAKLQDLFNLEQQIV 144

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2089900 AHP1 "histidine-containing phosphotransmitter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 50/136 (36%), Positives = 83/136 (61%)

Query:     7 QQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQE 66
             Q+ L ++ +SL  +GILD  F  L ++Q++ +P FV++V+ LF +D++  +     SL +
Sbjct:     7 QKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQ 66

Query:    67 PSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTL 126
               VD+ K+   VHQL+G+SSSIG  RV  AC   RS  + ++ E C+  LQ++ +EY  +
Sbjct:    67 QVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLV 126

Query:   127 HVNLAHILNLGRQILA 142
                L  +  L +QI+A
Sbjct:   127 KNRLETLFKLEQQIVA 142

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0009553 "embryo sac development" evidence=IGI

GO:0016049 "cell growth" evidence=IGI

GO:0051301 "cell division" evidence=IGI

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2016339 HP6 "histidine phosphotransfer protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 51/140 (36%), Positives = 78/140 (55%)

Query:     6 LQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQ 65
             LQ ++N  + SL  QG+LD  F  L ++Q++ SP FV +VIN++  ++E  +   R  L 
Sbjct:     9 LQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRLLLM 68

Query:    66 EPSV-DYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQ 124
             +    DY K+   ++QL G+SSSIG  RV   C   RSA +  ++  C   L+ +  EY 
Sbjct:    69 DREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEHEYH 128

Query:   125 TLHVNLAH-ILNLGRQ-ILA 142
              L  N+ H +  L +Q ILA
Sbjct:   129 YLK-NMMHELFQLEQQRILA 147

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA

GO:0010089 "xylem development" evidence=IMP

UNIPROTKB|Q884X1 PSPTO_1965 "Hpt domain protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 24/101 (23%), Positives = 53/101 (52%)

Query:    26 NFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGAS 85
             ++  LS +Q      + T ++++F +D+E  + Q R +++  ++D  +L    H  +G+S
Sbjct:     6 DYSVLSALQEVMEDEYPT-LLDVFLKDSEQRLAQLRLAVETGNLDLQELSLTAHSFKGSS 64

Query:    86 SSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTL 126
             S++G  +++  C +L       D     +++ RI  EY T+
Sbjct:    65 SNMGALQLSQLCHQLEERARQNDSSDLRDLIGRIGSEYLTV 105

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955364 AT4G04402 "AT4G04402" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 47/151 (31%), Positives = 68/151 (45%)

Query:     5 SLQQELN---NFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQAR 61
             SL  +LN    FV S    G LD  F  L ++Q+D SP FV EV++LF  D    I+   
Sbjct:     5 SLGMDLNWIGYFVGSSGFLGFLDDQFTELKKLQDDGSPDFVAEVLSLFFEDCVKLISNMA 64

Query:    62 DSLQEPS--VDYD--KLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKE-----RC 112
              +L + +  VD+   KL +            G     LA R +      K K      R 
Sbjct:    65 RALDKSTGTVDFGQMKLFSCTLVFDTVLVRRGSKLCVLASRNIAKLRITKGKLVQHRLRT 124

Query:   113 NEI--LQRIVEEYQTLHVNLAHILNLGRQIL 141
             + +  LQ++  EY+TL   L  + NL +QI+
Sbjct:   125 HRLRCLQQVDIEYKTLTTKLQDMFNLEKQII 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      150       150   0.00087  104 3  11 22  0.45    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  535 (57 KB)
  Total size of DFA:  124 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.83u 0.16s 17.99t   Elapsed:  00:00:01
  Total cpu time:  17.83u 0.16s 17.99t   Elapsed:  00:00:01
  Start:  Tue May 21 04:43:13 2013   End:  Tue May 21 04:43:14 2013

GO:0005575 "cellular_component" evidence=ND

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9T7	AHP5_ARATH	No assigned EC number	0.3661	0.94	0.8980	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
pfam01627	87	pfam01627, Hpt, Hpt domain	2e-04
cd00088	94	cd00088, HPT, Histidine Phosphotransfer domain, in	0.002

>gnl|CDD|216615 pfam01627, Hpt, Hpt domain

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 44  EVINLFTRDAENAITQARDSLQEPSV-DYDKLIAAVHQLRGASSSIGGCRVALACRELRS 102
           E++ LF  +A   + Q   +L      D + L  A H L+G++ S+G   +A    EL  
Sbjct: 1   ELLELFLEEAPELLEQLEQALLALEAEDLEALFRAAHTLKGSAGSLGLPALAELAHELED 60

Query: 103 AIDDKDKERC-NEILQRIVEEYQTL 126
            +          + L  + +E + L
Sbjct: 61  LLRAGRDGELLLQALDELKDELEAL 85

The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072). Length = 87

>gnl|CDD|238041 cd00088, HPT, Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 42  VTEVINLFTRDAE---NAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACR 98
           + E++ LF  +AE     + +A   L+  + D +++  A H L+G+++S+G  R+A    
Sbjct: 1   MEELLELFLEEAEELLEELERALLELE-DAEDLNEIFRAAHTLKGSAASLGLQRLAQLAH 59

Query: 99  ELRSAID--DKDKERCNEILQRIVEEYQTL 126
           +L   +D      E   E++  +++    L
Sbjct: 60  QLEDLLDALRDGLEVTPELIDLLLDALDAL 89

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are involved in important processes such as osmoregulation, cell growth, and differentiation; to date two-component proteins have not been identified in animals; in most prokaryotic systems, the output response is effected directly by the RR, which functions as a transcription factor while in eukaryotic systems, two-component proteins are found at the beginning of signaling pathways where they interface with more conventional eukaryotic signaling strategies such as MAP kinase and cyclic nucleotide cascades. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG4747	150	consensus Two-component phosphorelay intermediate	99.97
COG2198	122	ArcB FOG: HPt domain [Signal transduction mechanis	99.66
PF01627	90	Hpt: Hpt domain; InterPro: IPR008207 Two-component	99.65
smart00073	87	HPT Histidine Phosphotransfer domain. Contains an	99.52
cd00088	94	HPT Histidine Phosphotransfer domain, involved in	99.41
TIGR02956	968	TMAO_torS TMAO reductase sytem sensor TorS. This p	99.38
PRK11091	779	aerobic respiration control sensor protein ArcB; P	99.1
PRK10618	894	phosphotransfer intermediate protein in two-compon	98.91
PRK11466	914	hybrid sensory histidine kinase TorS; Provisional	98.63
PRK11107	919	hybrid sensory histidine kinase BarA; Provisional	98.59
PRK10547	670	chemotaxis protein CheA; Provisional	97.9
COG0643	716	CheA Chemotaxis protein histidine kinase and relat	97.87
PRK09959	1197	hybrid sensory histidine kinase in two-component r	96.8
PRK15347	921	two component system sensor kinase SsrA; Provision	96.44

>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]

Probab=99.97  E-value=3.5e-30  Score=191.81  Aligned_cols=144  Identities=38%  Similarity=0.572  Sum_probs=136.9

Q ss_pred             hhHHHHHHHHHHHHHhhhccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 043077            3 GTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLR   82 (150)
Q Consensus         3 ~~~l~~~~~~~~~~~~d~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LK   82 (150)
                      +.+|+.+...|.+|+|++|++|.+|.+|++|+++..|+|+.+++..|++|+++.|..++.|+..+. |+.+++.+.|.||
T Consensus         5 i~~~q~~~~d~~~sl~~qgild~qF~qlq~lqD~~~p~fv~ev~~~fF~~s~~~i~~~r~ald~~~-d~k~~~~~~hqlk   83 (150)
T KOG4747|consen    5 IISMQRDVSDYTKSLFDQGILDSQFLQLQELQDDSSPDFVEEVVGLFFEDSERLINNLRLALDCER-DFKKLGSHVHQLK   83 (150)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HHHHHHHHHHHcc
Confidence            468999999999999999999999999999999999999999999999999999999999999763 9999999999999


Q ss_pred             ccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-hhhhhhcc
Q 043077           83 GASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQ-ILALQRGQ  147 (150)
Q Consensus        83 GSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~q-~~~~~~~~  147 (150)
                      |||++|||.++..+|..+..+|+.++.++|...+++++.||..++.+|++|.+++|| +..+|++.
T Consensus        84 gssssIGa~kvk~~c~~~~~~~~~~n~egcvr~l~~v~ie~~~lkkkL~~~f~L~rq~i~~~~~~n  149 (150)
T KOG4747|consen   84 GSSSSIGALKVKKVCVGFNEFCEAGNIEGCVRCLQQVKIEYSLLKKKLETLFQLERQEILAAGGTN  149 (150)
T ss_pred             CchhhhhHHHHHHHHHHHHHHHhhccchhHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            999999999999999999999999999999999999999999999999999999999 55555443

>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms]

Probab=99.66  E-value=1.2e-15  Score=110.39  Aligned_cols=104  Identities=24%  Similarity=0.442  Sum_probs=89.5

Q ss_pred             HHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhh
Q 043077           27 FDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDD  106 (150)
Q Consensus        27 ~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~  106 (150)
                      +..+..+.. +.|+++.+++..|+++++..+..++.++..+  |+..+.+.||+||||++|+|+.+|+.+|.++|..++.
T Consensus        11 ~~~~~~~~g-~~~~~~~~ll~~f~~~~~~~l~~l~~~l~~~--d~~~~~~~aH~lkg~a~~lg~~~L~~~~~~lE~~~~~   87 (122)
T COG2198          11 IELLVRLIG-GDPDLLRELLAMFLEEAPAQLEQLESALAAE--DNDGLARLAHRLKGSAASLGLPALAQLCQQLEDALRS   87 (122)
T ss_pred             HHHHHHHcC-CChHHHHHHHHHHHHHhHHHHHHHHHHHhcC--CcHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHc
Confidence            334444433 5699999999999999999999999999976  7899999999999999999999999999999999998


Q ss_pred             -cCHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 043077          107 -KDKERCNEILQRIVEE--YQTLHVNLAHI  133 (150)
Q Consensus       107 -~~~~~~~~~l~~l~~e--f~~~~~~L~~~  133 (150)
                       ...+....++..++.+  ...+...+.++
T Consensus        88 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~  117 (122)
T COG2198          88 GASLEELEELIAELKDELQLDVLALELLTY  117 (122)
T ss_pred             CCcHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence             6899999999999999  55555444444

>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=99.65  E-value=8.3e-16  Score=103.59  Aligned_cols=83  Identities=23%  Similarity=0.476  Sum_probs=71.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcCHHH---HHHHHH
Q 043077           44 EVINLFTRDAENAITQARDSL---QEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKER---CNEILQ  117 (150)
Q Consensus        44 ~li~~Fl~d~~~~l~~L~~Al---~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~---~~~~l~  117 (150)
                      ++++.|++++++.+..|+.++   ..  .|++.+++.+|+|||+++++|+.++..+|..+|..++.++...   +...++
T Consensus         1 ell~~f~~~~~~~~~~l~~~~~~~~~--~d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~~~~~~~~~   78 (90)
T PF01627_consen    1 ELLDIFLEEAPEDLEQLEQALQALEQ--EDWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEAEELEQLLD   78 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSHH--CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhH--hhHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence            579999999999999999999   54  4899999999999999999999999999999999999998888   555555


Q ss_pred             HHHHHHHHHHH
Q 043077          118 RIVEEYQTLHV  128 (150)
Q Consensus       118 ~l~~ef~~~~~  128 (150)
                      .|...++++++
T Consensus        79 ~l~~~l~~l~~   89 (90)
T PF01627_consen   79 ELEAMLEQLRQ   89 (90)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            55555555443

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....

>smart00073 HPT Histidine Phosphotransfer domain

Probab=99.52  E-value=1.8e-14  Score=97.45  Aligned_cols=85  Identities=21%  Similarity=0.350  Sum_probs=73.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 043077           44 EVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEY  123 (150)
Q Consensus        44 ~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef  123 (150)
                      +++..|+++.++.+..|+.++..  .|+..+++.+|+||||++|+|+.+|..+|..+|...+... ++...++..+...|
T Consensus         2 e~~~~f~~~~~~~l~~l~~~~~~--~~~~~l~~~~H~LKG~a~~~g~~~l~~~~~~lE~~~~~~~-~~~~~~~~~l~~~~   78 (87)
T smart00073        2 EELAEFLQSLEEGLLELEKALDA--QDVNEIFRAAHTLKGSAGSLGLQQLAQLCHQLENLLDAAR-SGEVELTPDLLDLL   78 (87)
T ss_pred             hHHHHHHHHHHHHHHHHHhCcCH--hHHHHHHHHHHhhhhhHHhcCHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHH
Confidence            67899999999999999999975  4899999999999999999999999999999999988644 33446777788877


Q ss_pred             HHHHHHHH
Q 043077          124 QTLHVNLA  131 (150)
Q Consensus       124 ~~~~~~L~  131 (150)
                      ..+...|.
T Consensus        79 ~~~~~~l~   86 (87)
T smart00073       79 LELVDVLK   86 (87)
T ss_pred             HHHHHHHc
Confidence            77776653

Contains an active histidine residue that mediates phosphotransfer reactions. Domain detected only in eubacteria. This alignment is an extension to that shown in the Cell structure paper.

>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

Probab=99.41  E-value=1e-12  Score=90.51  Aligned_cols=66  Identities=27%  Similarity=0.481  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcC
Q 043077           43 TEVINLFTRDAENAITQARDSLQE--PSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKD  108 (150)
Q Consensus        43 ~~li~~Fl~d~~~~l~~L~~Al~~--~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~  108 (150)
                      .+++..|+++.+..+..|..++.+  .+.|+..++..+|+||||++++|+.+|..+|..+|..++.+.
T Consensus         2 ~~l~~~f~~~~~~~l~~l~~~~~~~~~~~d~~~l~~~~H~LkGsa~~~G~~~l~~~~~~lE~~~~~~~   69 (94)
T cd00088           2 EELLELFLEEAEELLEELERALLELEDAEDLNEIFRAAHTLKGSAASLGLQRLAQLAHQLEDLLDALR   69 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999981  124899999999999999999999999999999999998763

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS

Probab=99.38  E-value=2.8e-12  Score=118.19  Aligned_cols=94  Identities=15%  Similarity=0.221  Sum_probs=87.7

Q ss_pred             cCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHH
Q 043077           36 DQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEI  115 (150)
Q Consensus        36 ~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~  115 (150)
                      ..+++.+.+++..|+++.+..+..|..++..+  |+..+++.+|.|||+++++||.+++.+|+.||..++.|+.  ....
T Consensus       875 ~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~--d~~~~~~~~H~lkg~~~~~g~~~l~~~~~~le~~~~~~~~--~~~~  950 (968)
T TIGR02956       875 VLGVEKVRQLVALFKTSSAEQLEELSAARAVD--DDAQIKKLAHKLKGSAGSLGLTQLTQLCQQLEKQGKTGAL--ELSD  950 (968)
T ss_pred             hcCcHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcccCCc--chhH
Confidence            35788999999999999999999999999875  8999999999999999999999999999999999999988  4578


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 043077          116 LQRIVEEYQTLHVNLAHI  133 (150)
Q Consensus       116 l~~l~~ef~~~~~~L~~~  133 (150)
                      ++.|+..|..++.+|++|
T Consensus       951 ~~~l~~~~~~~~~~l~~~  968 (968)
T TIGR02956       951 IDEIKQAWQASKTALDQW  968 (968)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            999999999999999875

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional

Probab=99.10  E-value=7.5e-10  Score=100.69  Aligned_cols=104  Identities=13%  Similarity=0.210  Sum_probs=95.1

Q ss_pred             hhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcCHHHH
Q 043077           33 IQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERC  112 (150)
Q Consensus        33 L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~  112 (150)
                      +.+..+++.+.+.+..|.+..+..+..|..++..+  |...+...+|+|||+++++|+..++.+|..+|.....+.++..
T Consensus       674 ~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~l~~~--d~~~~~~~ah~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~  751 (779)
T PRK11091        674 YVELVGPKLITDSLAVFEKMMPGYLSVLDSNLTAR--DQKGIVEEAHKIKGAAGSVGLRHLQQLAQQIQSPDLPAWWDNV  751 (779)
T ss_pred             HHHhcCHHHHHHHHHHHHHhhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcCccccHHHH
Confidence            33334667888999999999999999999999875  8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhch
Q 043077          113 NEILQRIVEEYQTLHVNLAHILNLGR  138 (150)
Q Consensus       113 ~~~l~~l~~ef~~~~~~L~~~l~~~~  138 (150)
                      ..++++++.+|+....+|++|++..+
T Consensus       752 ~~~~~~l~~~~~~~~~~~~~~~~~~~  777 (779)
T PRK11091        752 QDWVEELKNEWRHDVEVLKAWLAQAE  777 (779)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999997653

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional

Probab=98.91  E-value=6e-09  Score=97.44  Aligned_cols=84  Identities=17%  Similarity=0.289  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 043077           41 FVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIV  120 (150)
Q Consensus        41 f~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~  120 (150)
                      +...++..|++..|.-+..|..++.++  |+..+...||.|||+++++|...++.+|..||..++.++..++...+.+|.
T Consensus       808 ~~s~~~~lF~~t~~~di~~L~~~~~~~--D~~~l~~~aHrLKG~~aml~l~~l~~~~~~LE~~i~~~~~~~i~~~i~~id  885 (894)
T PRK10618        808 HASDYYALFVDTVPDDVKRLYTEAATS--DFASLAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDEPGIENYISDID  885 (894)
T ss_pred             hhhhHHHHHHHhhHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Confidence            334567899999999999999999975  899999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 043077          121 EEYQTL  126 (150)
Q Consensus       121 ~ef~~~  126 (150)
                      ..+.++
T Consensus       886 ~~v~~l  891 (894)
T PRK10618        886 SFVKSL  891 (894)
T ss_pred             HHHHHH
Confidence            877654

>PRK11466 hybrid sensory histidine kinase TorS; Provisional

Probab=98.63  E-value=1.8e-07  Score=86.20  Aligned_cols=89  Identities=22%  Similarity=0.215  Sum_probs=72.5

Q ss_pred             CCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 043077           37 QSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEIL  116 (150)
Q Consensus        37 ~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l  116 (150)
                      .+++.+.+++..|.++++..+..++.+...+  |+..+++.||.|||+++++|+.++..+|.++|..+...         
T Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~ah~lkg~~~~lg~~~l~~~~~~le~~~~~~---------  888 (914)
T PRK11466        820 MGTEKIHEWLALFKQHALPLLDEIDIARASQ--DSEKIKRAAHQLKSSCSSLGMRQASQACAQLEQQPLSA---------  888 (914)
T ss_pred             cCHHHHHHHHHHHHHhhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCc---------
Confidence            4667788999999999999999999999865  89999999999999999999999999999999975422         


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 043077          117 QRIVEEYQTLHVNLAHILNL  136 (150)
Q Consensus       117 ~~l~~ef~~~~~~L~~~l~~  136 (150)
                      ..+..++.+...+|+.|+..
T Consensus       889 ~~~~~~~~~~~~~~~~~~~~  908 (914)
T PRK11466        889 PLPHEEITRSVAALEAWLAK  908 (914)
T ss_pred             hhHHHHHHHHHHHHHHHHHh
Confidence            12344555555566666554

>PRK11107 hybrid sensory histidine kinase BarA; Provisional

Probab=98.59  E-value=5.4e-07  Score=82.72  Aligned_cols=97  Identities=15%  Similarity=0.293  Sum_probs=84.6

Q ss_pred             CCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhc-CHHHHHHH
Q 043077           37 QSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDK-DKERCNEI  115 (150)
Q Consensus        37 ~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~-~~~~~~~~  115 (150)
                      +.++...+++..|+++.+..+..|..++...  |...++..+|++||+++++|+.++..+|..+|...+.+ ..+.....
T Consensus       821 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~h~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~~~~~  898 (919)
T PRK11107        821 GKPDLARDMLQMLLDFLPEVRNKVEEALAGE--DPEGLLDLIHKLHGSCSYSGVPRLKKLCQLIEQQLRSGTSVEDLEPE  898 (919)
T ss_pred             CCHHHHHHHHHHHHHhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCChhhHHHH
Confidence            4567888999999999999999999999865  78999999999999999999999999999999998876 46777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 043077          116 LQRIVEEYQTLHVNLAHILN  135 (150)
Q Consensus       116 l~~l~~ef~~~~~~L~~~l~  135 (150)
                      +..+..++.++...++++++
T Consensus       899 ~~~~~~~~~~~~~~~~~~~~  918 (919)
T PRK11107        899 LLELLDEMENVARAAKKVLS  918 (919)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            77788888888887777653

>PRK10547 chemotaxis protein CheA; Provisional

Probab=97.90  E-value=8.8e-05  Score=67.93  Aligned_cols=66  Identities=12%  Similarity=0.276  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHhhccccccCHHHHHHHHHHHHHh---hhhcC
Q 043077           43 TEVINLFTRDAENAITQARDSL---QEPSVDY---DKLIAAVHQLRGASSSIGGCRVALACRELRSA---IDDKD  108 (150)
Q Consensus        43 ~~li~~Fl~d~~~~l~~L~~Al---~~~~~D~---~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~  108 (150)
                      .+++..|++++.++|+.|+..+   +..+.|.   ..+-+.+|+|||+|+.+|-..+..+|-.+|..   .|.|.
T Consensus         4 ~~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~E~lld~vR~g~   78 (670)
T PRK10547          4 SDFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLMENLLDEARRGE   78 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHHHHHHHHHHCCC
Confidence            4789999999999999999886   3433454   46788999999999999999999999999987   35553

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.87  E-value=9.7e-05  Score=68.08  Aligned_cols=91  Identities=21%  Similarity=0.376  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHh---cCCCCCHH---HHHHHHHHhhccccccCHHHHHHHHHHHHHh---hhhcCHH
Q 043077           40 LFVTEVINLFTRDAENAITQARDSL---QEPSVDYD---KLIAAVHQLRGASSSIGGCRVALACRELRSA---IDDKDKE  110 (150)
Q Consensus        40 df~~~li~~Fl~d~~~~l~~L~~Al---~~~~~D~~---~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~~~  110 (150)
                      +-..++...|++++++++..|..++   ..++.|.+   .+.+.||+|||+++.+|...+.++|-.+|..   .++|..+
T Consensus         4 ~~~~~~~~~F~~Ea~e~l~~l~~~Ll~LE~~~~d~~~ln~ifRaaHTlKG~a~~~g~~~l~~l~H~~E~~ld~~r~g~~~   83 (716)
T COG0643           4 MDMEEILEDFLEEAEELLQALEQALLALEPDPEDLDLLNAIFRAAHTLKGGAGTLGLTTLAELAHAMEDLLDALRNGELE   83 (716)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHhHhhccCCCCCHHHHHHHHHHHHhhhhhhhhcChhHHHHHHHHHHHHHHHHhcCCcc
Confidence            3456889999999999999999865   33334544   6689999999999999999999999999985   5666544


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 043077          111 RCNEILQRIVEEYQTLHVNL  130 (150)
Q Consensus       111 ~~~~~l~~l~~ef~~~~~~L  130 (150)
                      --..++..+-...+.....+
T Consensus        84 ~~~~l~d~~l~~~D~l~~~~  103 (716)
T COG0643          84 LTSELLDLLLEALDALEEML  103 (716)
T ss_pred             CcHHHHHHHhhhhHHHHHHH
Confidence            33444444444333333333

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

Probab=96.80  E-value=0.031  Score=53.50  Aligned_cols=95  Identities=16%  Similarity=0.257  Sum_probs=74.4

Q ss_pred             CchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcC-HHHHHHHH
Q 043077           38 SPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKD-KERCNEIL  116 (150)
Q Consensus        38 ~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~-~~~~~~~l  116 (150)
                      ......+++..+...+...+..+..+...+  |...++..+|.+||++..+|+..+...|.++|......+ .+....++
T Consensus      1098 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~g~~~~l~~~~l~~~~~~~e~~~~~~~~~~~l~~~~ 1175 (1197)
T PRK09959       1098 DLQLMQEILMTFQHETHKDLPAAFHALEAG--DNRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSDDSKPEILQLL 1175 (1197)
T ss_pred             CHHHHHHHHHHHHHhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhhcCCchHHHHHHH
Confidence            446778889999999999998888888876  789999999999999999999999999999998876544 34455556


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 043077          117 QRIVEEYQTLHVNLAHIL  134 (150)
Q Consensus       117 ~~l~~ef~~~~~~L~~~l  134 (150)
                      ..+..........+..++
T Consensus      1176 ~~~~~~~~~~~~~~~~~~ 1193 (1197)
T PRK09959       1176 NSVKEHIAELDQEIAVFC 1193 (1197)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            666655555555555544

>PRK15347 two component system sensor kinase SsrA; Provisional

Probab=96.44  E-value=0.01  Score=54.83  Aligned_cols=61  Identities=15%  Similarity=0.250  Sum_probs=51.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcCH
Q 043077           45 VINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDK  109 (150)
Q Consensus        45 li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~  109 (150)
                      +-..+.+.....+..+..++..+  |  .+++.+|.+||+++++|+.++...|.++|...+.+..
T Consensus       838 l~~~~~~~l~~~~~~~~~~~~~~--~--~l~~~~h~i~~~~~~~g~~~l~~~~~~~e~~~~~~~~  898 (921)
T PRK15347        838 LNSKLYQSLLLLLAQIEQAVENQ--E--VLSQLLHTLKGCAGQAGLTELQCAVIDLENALETGEI  898 (921)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCH--H--HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCC
Confidence            44555566778888888888864  3  9999999999999999999999999999999877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
1wn0_A	145	Crystal Structure Of Histidine-containing Phosphotr		9e-19
1yvi_A	149	X-Ray Structure Of Putative Histidine-Containing Ph		3e-18
4euk_B	159	Crystal Structure Length = 159		2e-17
3us6_A	153	Crystal Structure Of Histidine-Containing Phosphotr		1e-15

>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer Protein, Zmhp2, From Maize Length = 145

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
Query: 1   MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQ-SPLFVTEVINLFTRDAENAITQ 59
           M   +L+++LN  + S+   G++D  F  L  +Q D  +P FV EV+ LF  DA+  I++
Sbjct: 1   MAAAALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISE 60
Query: 60  ARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRI 119
               L +P VD+DK+ A VHQL+G+S+S+G  +V   C + R    DK+++ C   L  +
Sbjct: 61  LAALLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMALAVV 120
Query: 120 VEEYQTL 126
             E+  L
Sbjct: 121 RNEFYDL 127

>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing Phosphotransfer Protein From Rice, Ak104879 Length = 149

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
Query: 3   GTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQ-SPLFVTEVINLFTRDAENAITQAR 61
             +L+ +L   + S+  QG++D  F  L  +Q++  +P FV+EV+ LF  DA+  I +  
Sbjct: 3   AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIA 62
Query: 62  DSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVE 121
             L++P V++DK+ A VHQL+G+S+S+G  +V   C + R    DK ++ C   L  +  
Sbjct: 63  TLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRN 122
Query: 122 EYQTLHVNLAHILNLGRQILALQRGQH 148
           ++  L      +L L +QI A    Q 
Sbjct: 123 DFYDLRNKFQTMLQLEQQIQAYDPKQQ 149

>pdb|4EUK|B Chain B, Crystal Structure Length = 159

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 83/136 (61%)
Query: 7   QQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQE 66
           Q+ L ++ +SL  +GILD  F  L ++Q++ +P FV++V+ LF +D++  +     SL +
Sbjct: 12  QKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQ 71
Query: 67  PSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTL 126
             VD+ K+   VHQL+G+SSSIG  RV  AC   RS  + ++ E C+  LQ++ +EY  +
Sbjct: 72  QVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLV 131
Query: 127 HVNLAHILNLGRQILA 142
              L  +  L +QI+A
Sbjct: 132 KNRLETLFKLEQQIVA 147

>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer Protein Mthpt1 From Medicago Truncatula Length = 153

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 85/137 (62%)
Query: 6   LQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQ 65
           ++++  ++++S+  +G LD  F  L ++Q++ +P FV EV++LF  D+E  +     ++ 
Sbjct: 6   MRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVD 65
Query: 66  EPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQT 125
           + S+D+ K+ A VHQ +G+S+SIG  RV  +C   R+  ++++ + C   LQ++ +EY  
Sbjct: 66  QQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLL 125
Query: 126 LHVNLAHILNLGRQILA 142
           +   L  +L L +QI+A
Sbjct: 126 VKNKLETLLRLEQQIVA 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	2e-32
3us6_A	153	Histidine-containing phosphotransfer protein type	2e-31
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	2e-10
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	3e-09
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	5e-07
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	3e-05
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	9e-04

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A Length = 149

 Score =  111 bits (278), Expect = 2e-32
 Identities = 46/139 (33%), Positives = 79/139 (56%), Gaps = 1/139 (0%)

Query: 5   SLQQELNNFVRSLREQGILDHNFDTLSRIQND-QSPLFVTEVINLFTRDAENAITQARDS 63
           +L+ +L   + S+  QG++D  F  L  +Q++  +P FV+EV+ LF  DA+  I +    
Sbjct: 5   ALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATL 64

Query: 64  LQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEY 123
           L++P V++DK+ A VHQL+G+S+S+G  +V   C + R    DK ++ C   L  +  ++
Sbjct: 65  LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDF 124

Query: 124 QTLHVNLAHILNLGRQILA 142
             L      +L L +QI A
Sbjct: 125 YDLRNKFQTMLQLEQQIQA 143

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula} Length = 153

 Score =  108 bits (272), Expect = 2e-31
 Identities = 44/142 (30%), Positives = 86/142 (60%)

Query: 1   MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQA 60
           M    ++++  ++++S+  +G LD  F  L ++Q++ +P FV EV++LF  D+E  +   
Sbjct: 1   MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDL 60

Query: 61  RDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIV 120
             ++ + S+D+ K+ A VHQ +G+S+SIG  RV  +C   R+  ++++ + C   LQ++ 
Sbjct: 61  SFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVK 120

Query: 121 EEYQTLHVNLAHILNLGRQILA 142
           +EY  +   L  +L L +QI+A
Sbjct: 121 QEYLLVKNKLETLLRLEQQIVA 142

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A Length = 167

 Score = 54.8 bits (131), Expect = 2e-10
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 20  QGILDHNFDTLSRIQ--NDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAA 77
             I++     L+ I   +D    F   +I  F   A+    Q +  L     +  +L   
Sbjct: 6   SEIINW--TILNEIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEK-NLTELDNL 62

Query: 78  VHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNE 114
            H L+G+S+++G  R+A  C  +++     +    N+
Sbjct: 63  GHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNK 99

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5 Length = 120

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 11/114 (9%), Positives = 33/114 (28%), Gaps = 4/114 (3%)

Query: 22  ILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQL 81
           +L+     +  +  +     V  ++++F  + ++ I    +           L    H L
Sbjct: 11  VLNQ--QKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHAL 66

Query: 82  RGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILN 135
           + +++S G  R+      +         +        ++              N
Sbjct: 67  KSSAASFGADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSWTN 120

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A Length = 125

 Score = 45.0 bits (106), Expect = 5e-07
 Identities = 17/106 (16%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 19  EQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAV 78
            + +LD     L +      P  +T+ + +F +     ++    +L   + D   ++   
Sbjct: 8   SEALLD--IPMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLT--AQDKKGIVEEG 63

Query: 79  HQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQ 124
           H+++GA+ S+G   +    ++++S      ++   E ++ + EE++
Sbjct: 64  HKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWR 109

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP} Length = 119

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 17/107 (15%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 30  LSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIG 89
           L++  +  +     E++ +        + + + +L +   D   +++ +H+L GAS   G
Sbjct: 12  LTQANHKSN--LALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCG 67

Query: 90  GCRVALACRELRSAI-DDKDKERCNEILQRIVEEYQTLHVNLAHILN 135
                  C+E+ SA+      E     +  +++E   +   +  +L+
Sbjct: 68  VPTTQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLS 114

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6 Length = 113

 Score = 36.1 bits (83), Expect = 9e-04
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 41  FVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACREL 100
            V EV+ LF         QA          +     AVH ++GA+  +G   +   C   
Sbjct: 26  VVDEVLALFRE-------QAALWAPMLDPTHPGWKDAVHTVKGAARGVGAFNLGEVCERC 78

Query: 101 RSAIDDKDKER 111
            +  +  +  R
Sbjct: 79  EAGQESLEGVR 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
3us6_A	153	Histidine-containing phosphotransfer protein type	100.0
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	100.0
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	99.97
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	99.89
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	99.81
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	99.8
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	99.76
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	99.74
1sr2_A	116	Putative sensor-like histidine kinase YOJN; four-h	99.63
1tqg_A	105	Chemotaxis protein CHEA; histidine kinase, phospho	99.56
2ld6_A	139	Chemotaxis protein CHEA; TMP1, transferase; NMR {T	99.41
1i5n_A	146	Chemotaxis protein CHEA; four-helix bundle, transf	99.38
2lch_A	113	Protein OR38; structural genomics, northeast struc	99.36
3kyj_A	144	CHEA3, putative histidine protein kinase; protein-	99.01
2lp4_A	225	Chemotaxis protein CHEA; two component signaling s	98.67
2cw9_A	194	Translocase of inner mitochondrial membrane; struc	80.75

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}

Probab=100.00  E-value=1.7e-42  Score=260.95  Aligned_cols=149  Identities=30%  Similarity=0.528  Sum_probs=145.3

Q ss_pred             CchhHHHHHHHHHHHHHhhhccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043077            1 MVGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQ   80 (150)
Q Consensus         1 ~~~~~l~~~~~~~~~~~~d~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~   80 (150)
                      |.+.+|++|+.++++||+++|+||++|++|++|+++++|+|+.+||..|++|+++.+..|+.|+.+++.|+..+++.||+
T Consensus         1 ~~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~   80 (153)
T 3us6_A            1 MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQ   80 (153)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999866699999999999


Q ss_pred             hhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhcccC
Q 043077           81 LRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQILALQRGQHQ  149 (150)
Q Consensus        81 LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~q~~~~~~~~~~  149 (150)
                      |||||+||||.+|+.+|..||.+++.++.+++..++.+|+.+|..++.+|++|++++||+.++||++|+
T Consensus        81 LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~~~~~~~~~  149 (153)
T 3us6_A           81 FKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAAGGSIPM  149 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999997

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A

Probab=100.00  E-value=4e-40  Score=246.42  Aligned_cols=146  Identities=32%  Similarity=0.587  Sum_probs=135.1

Q ss_pred             chhHHHHHHHHHHHHHhhhccchhHHHHHhhhhccCC-chHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043077            2 VGTSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQS-PLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQ   80 (150)
Q Consensus         2 ~~~~l~~~~~~~~~~~~d~g~lD~~~~~L~~L~~~~~-~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~   80 (150)
                      ++++||+|+++|++||+++|+||++|++|++|+++++ |+|+.+||..|++|+++.|..|+.|++++++|+..++.++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~   81 (149)
T 1yvi_A            2 AAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQ   81 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence            5789999999999999999999999999999988888 999999999999999999999999999876699999999999


Q ss_pred             hhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhcc
Q 043077           81 LRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQILALQRGQ  147 (150)
Q Consensus        81 LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~q~~~~~~~~  147 (150)
                      |||||+||||.+|+.+|.+||..++.++.+++..++.+|+.+|..++.+|++|++++||++++|+++
T Consensus        82 LKGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~~~~~~~~  148 (149)
T 1yvi_A           82 LKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQAYDPKQ  148 (149)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999986

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A

Probab=99.97  E-value=3.1e-30  Score=196.40  Aligned_cols=119  Identities=18%  Similarity=0.287  Sum_probs=111.5

Q ss_pred             HHhhhccchh-HHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHH
Q 043077           16 SLREQGILDH-NFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVA   94 (150)
Q Consensus        16 ~~~d~g~lD~-~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~   94 (150)
                      ||-+.|+||+ +|.+|++|++++ |+|+.+||..|++|++++|..|++|++ ...|+..++.++|+||||||||||.+|+
T Consensus         2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~rV~   79 (167)
T 2r25_A            2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQRIA   79 (167)
T ss_dssp             CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            5778999998 699999999987 999999999999999999999999999 2359999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcC------------HH--------------------------------HHHHHHHHHHHHHHHHHHHH
Q 043077           95 LACRELRSAIDDKD------------KE--------------------------------RCNEILQRIVEEYQTLHVNL  130 (150)
Q Consensus        95 ~~c~~lE~~~~~~~------------~~--------------------------------~~~~~l~~l~~ef~~~~~~L  130 (150)
                      .+|.+||++|+.++            .+                                +|...|++++.||..++.+|
T Consensus        80 ~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~L  159 (167)
T 2r25_A           80 WVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIEL  159 (167)
T ss_dssp             HHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999            44                                78999999999999999999


Q ss_pred             HHHHHh
Q 043077          131 AHILNL  136 (150)
Q Consensus       131 ~~~l~~  136 (150)
                      ++|++.
T Consensus       160 ~~~~~~  165 (167)
T 2r25_A          160 SKYYNT  165 (167)
T ss_dssp             HHHTTS
T ss_pred             HHHHcc
Confidence            999864

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A

Probab=99.89  E-value=4.8e-23  Score=148.70  Aligned_cols=117  Identities=15%  Similarity=0.247  Sum_probs=106.8

Q ss_pred             HhhhccchhH-HHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHH
Q 043077           17 LREQGILDHN-FDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVAL   95 (150)
Q Consensus        17 ~~d~g~lD~~-~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~   95 (150)
                      +-+.++||.. |.+|..+   .|++|+.+++..|++++++.+..|+.++..+  |+..+++.||+|||||+|+|+.+|+.
T Consensus         6 ~~~~~~lD~~~l~~l~~~---~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~~   80 (125)
T 2a0b_A            6 SKSEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQ   80 (125)
T ss_dssp             CHHHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4456778885 6666665   6889999999999999999999999999875  89999999999999999999999999


Q ss_pred             HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 043077           96 ACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGR  138 (150)
Q Consensus        96 ~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~  138 (150)
                      +|..+|..++.++.+++..++..|..+|..++..|+.|+...+
T Consensus        81 ~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~  123 (125)
T 2a0b_A           81 LGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKAT  123 (125)
T ss_dssp             HHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999987644

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}

Probab=99.81  E-value=2.2e-19  Score=129.48  Aligned_cols=114  Identities=15%  Similarity=0.293  Sum_probs=100.6

Q ss_pred             hhhccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHH
Q 043077           18 REQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALAC   97 (150)
Q Consensus        18 ~d~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c   97 (150)
                      ||..++|++  .+..+- .|+|++..+++.+|+++.|+.+..|+.++..+  |++.+.+.+|+|||||+|+||++|..+|
T Consensus         1 ~~~~~~D~~--~~l~~~-~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~   75 (119)
T 3myf_A            1 FDLHTLNWD--LCLTQA-NHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLC   75 (119)
T ss_dssp             -CTTTCCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred             CCccccCHH--HHHHHh-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            567788885  222222 27899999999999999999999999999975  8999999999999999999999999999


Q ss_pred             HHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043077           98 RELRSAIDDKD-KERCNEILQRIVEEYQTLHVNLAHILNL  136 (150)
Q Consensus        98 ~~lE~~~~~~~-~~~~~~~l~~l~~ef~~~~~~L~~~l~~  136 (150)
                      ..||..++.|. .+.....+..+..+...+..+++.|+..
T Consensus        76 ~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~  115 (119)
T 3myf_A           76 QEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ  115 (119)
T ss_dssp             HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999985 5788889999999999999999999873

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5

Probab=99.80  E-value=1.2e-21  Score=141.55  Aligned_cols=109  Identities=9%  Similarity=0.119  Sum_probs=89.4

Q ss_pred             ccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHH
Q 043077           21 GILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACREL  100 (150)
Q Consensus        21 g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~l  100 (150)
                      .++|  +.+|.+|+++.||+++.+++..|+++++++|..|+.+...+  |...+.+.+|+|||||+|+||.+|+.+|..+
T Consensus        10 ~~~d--~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~l   85 (120)
T 1y6d_A           10 DVLN--QQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIAI   85 (120)
T ss_dssp             TTTT--TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             cccc--HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHHH
Confidence            3444  45677777778999999999999999999999999987654  6888999999999999999999999999999


Q ss_pred             HHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043077          101 RSAIDDKDKERCNEILQRIVEEYQTLHVNLAHI  133 (150)
Q Consensus       101 E~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~  133 (150)
                      |..+|.|+...+......+...+.+++..++.+
T Consensus        86 E~~~r~g~~~~~~~~~~~l~~~l~~~~d~l~~~  118 (120)
T 1y6d_A           86 DKKAKANQLQEQGMETSEMLALLHITRDAYRSW  118 (120)
T ss_dssp             HHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHhCCChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence            999999988755445555555555566666554

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}

Probab=99.76  E-value=1.9e-18  Score=125.38  Aligned_cols=110  Identities=15%  Similarity=0.248  Sum_probs=96.1

Q ss_pred             hccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHH
Q 043077           20 QGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRE   99 (150)
Q Consensus        20 ~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~   99 (150)
                      .+++|++  .+..+- .|+|++..+++.+|+++.|+.+..|+.++..+  |++.+++.+|+|||||+++||.+|..+|..
T Consensus        12 ~~~~D~~--~~l~~a-~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~   86 (123)
T 3iqt_A           12 NATLDWQ--LALRQA-AGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQL   86 (123)
T ss_dssp             GGTCCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred             CCccCHH--HHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            3456764  333332 37899999999999999999999999999976  788999999999999999999999999999


Q ss_pred             HHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043077          100 LRSAIDDKD-KERCNEILQRIVEEYQTLHVNLAHIL  134 (150)
Q Consensus       100 lE~~~~~~~-~~~~~~~l~~l~~ef~~~~~~L~~~l  134 (150)
                      ||..++.|. .+.....+..+..+...+..+.++|+
T Consensus        87 LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~  122 (123)
T 3iqt_A           87 IEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL  122 (123)
T ss_dssp             HHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999996 45778889999999999999998886

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6

Probab=99.74  E-value=2.6e-18  Score=122.79  Aligned_cols=101  Identities=16%  Similarity=0.227  Sum_probs=85.9

Q ss_pred             hccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHH
Q 043077           20 QGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRE   99 (150)
Q Consensus        20 ~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~   99 (150)
                      .+.||..  .|..+ ..++|+|+.+|+..|++++++.+..|..+ .   .|+   ++.||+|||||+||||.+|..+|..
T Consensus         8 ~~~iD~~--~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a-~---~~~---~~~aH~LKGsA~~iGA~~l~~~c~~   77 (113)
T 2ooc_A            8 SGAVDFA--YLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT-H---PGW---KDAVHTVKGAARGVGAFNLGEVCER   77 (113)
T ss_dssp             -CCSCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT-S---TTH---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCcCHH--HHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh-h---HHH---HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            4567754  44444 34789999999999999999999999988 2   354   8999999999999999999999999


Q ss_pred             HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043077          100 LRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILN  135 (150)
Q Consensus       100 lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~  135 (150)
                      ||..++.     ....+..|+.++..++.+|..+++
T Consensus        78 lE~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~  108 (113)
T 2ooc_A           78 CEAGQES-----LEGVRTALDAALLDIAAYAHEQAL  108 (113)
T ss_dssp             HHTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999877     567889999999999999998775

>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4

Probab=99.63  E-value=3.5e-16  Score=112.38  Aligned_cols=88  Identities=17%  Similarity=0.277  Sum_probs=80.2

Q ss_pred             CCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 043077           37 QSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEIL  116 (150)
Q Consensus        37 ~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l  116 (150)
                      +.++.-.+++..|++..++.+..|+.++..+  |+..+++.||+||||++|+|+.+|..+|.++|..++.++.+.+...+
T Consensus        28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i  105 (116)
T 1sr2_A           28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYI  105 (116)
T ss_dssp             HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cchhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3456778899999999999999999999875  89999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHH
Q 043077          117 QRIVEEYQTL  126 (150)
Q Consensus       117 ~~l~~ef~~~  126 (150)
                      ..|+..+..+
T Consensus       106 ~~L~~~l~~L  115 (116)
T 1sr2_A          106 SDIDSYVKSL  115 (116)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888877653

>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3

Probab=99.56  E-value=7.4e-15  Score=102.60  Aligned_cols=91  Identities=16%  Similarity=0.334  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcC------CCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhh---hhcCHHHH
Q 043077           42 VTEVINLFTRDAENAITQARDSLQE------PSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAI---DDKDKERC  112 (150)
Q Consensus        42 ~~~li~~Fl~d~~~~l~~L~~Al~~------~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~---~~~~~~~~  112 (150)
                      +.+++..|++++++++..|+.++..      +..++..+.+.+|+|||||+++|+..+..+|..+|...   +.|.....
T Consensus         3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~~   82 (105)
T 1tqg_A            3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKIT   82 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            4689999999999999999999841      12357899999999999999999999999999999875   77777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 043077          113 NEILQRIVEEYQTLHVNLAH  132 (150)
Q Consensus       113 ~~~l~~l~~ef~~~~~~L~~  132 (150)
                      ..++..+...++.++..+..
T Consensus        83 ~~~~~~l~~~~d~l~~~l~~  102 (105)
T 1tqg_A           83 SDLLDKIFAGVDMITRMVDK  102 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888898888888877654

>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}

Probab=99.41  E-value=3.9e-13  Score=98.83  Aligned_cols=93  Identities=17%  Similarity=0.360  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhc------CCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhh---hhcCHHHHH
Q 043077           43 TEVINLFTRDAENAITQARDSLQ------EPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAI---DDKDKERCN  113 (150)
Q Consensus        43 ~~li~~Fl~d~~~~l~~L~~Al~------~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~---~~~~~~~~~  113 (150)
                      .+++..|++++++.|..|+.++.      .+..++..+.+.+|+|||||+++|+..+..+|..+|...   |.|......
T Consensus         3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~   82 (139)
T 2ld6_A            3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS   82 (139)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence            47899999999999999999983      122468899999999999999999999999999999865   777766666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 043077          114 EILQRIVEEYQTLHVNLAHILN  135 (150)
Q Consensus       114 ~~l~~l~~ef~~~~~~L~~~l~  135 (150)
                      .+++.+...++.++..+..+-.
T Consensus        83 ~l~~~l~~~~D~l~~~l~~~~~  104 (139)
T 2ld6_A           83 DLLDKIFAGVDMITRMVDKIVS  104 (139)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc
Confidence            7778888888887777776543

>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3

Probab=99.38  E-value=5.1e-13  Score=98.98  Aligned_cols=91  Identities=12%  Similarity=0.241  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhc---CCC---CCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHh---hhhcCHHHHH
Q 043077           43 TEVINLFTRDAENAITQARDSLQ---EPS---VDYDKLIAAVHQLRGASSSIGGCRVALACRELRSA---IDDKDKERCN  113 (150)
Q Consensus        43 ~~li~~Fl~d~~~~l~~L~~Al~---~~~---~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~~~~~~  113 (150)
                      .+++..|+++++++|..|+.++.   +++   .++..+.+.+|+|||||+++|+..+..+|-.+|..   .|.|......
T Consensus         6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~   85 (146)
T 1i5n_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT   85 (146)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            37899999999999999999982   111   24589999999999999999999999999999987   6777655445


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 043077          114 EILQRIVEEYQTLHVNLAHI  133 (150)
Q Consensus       114 ~~l~~l~~ef~~~~~~L~~~  133 (150)
                      .+++.+...++.++..+..+
T Consensus        86 ~l~~~l~~~~D~l~~~l~~~  105 (146)
T 1i5n_A           86 DIINLFLETKDIMQEQLDAY  105 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55666666665555555444

>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}

Probab=99.36  E-value=6.4e-13  Score=94.10  Aligned_cols=90  Identities=14%  Similarity=0.293  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhcC---CC---CCHHHHHHHHHHhhccccccCHHHHHHHHHHHHH---hhhhcCHHHHH
Q 043077           43 TEVINLFTRDAENAITQARDSLQE---PS---VDYDKLIAAVHQLRGASSSIGGCRVALACRELRS---AIDDKDKERCN  113 (150)
Q Consensus        43 ~~li~~Fl~d~~~~l~~L~~Al~~---~~---~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~---~~~~~~~~~~~  113 (150)
                      .+++..|+++++++|..|..++..   ++   .++..+.+.+|+|||||+++|+..+..+|-.+|.   ..+.+......
T Consensus         5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~   84 (113)
T 2lch_A            5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS   84 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            488999999999999999998832   11   2356799999999999999999999999999996   45777766667


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 043077          114 EILQRIVEEYQTLHVNLAH  132 (150)
Q Consensus       114 ~~l~~l~~ef~~~~~~L~~  132 (150)
                      .+++.+...++.++..++.
T Consensus        85 ~l~~~l~~~~d~l~~~l~~  103 (113)
T 2lch_A           85 DLIDKVKKKLDMVTRELDK  103 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7888888877777776654

>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A

Probab=99.01  E-value=9.9e-10  Score=81.30  Aligned_cols=94  Identities=21%  Similarity=0.246  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhc---CCCCC---HHHHHHHHHHhhccccccCHHHHHHHHHHHHHh---hhhcCHHHH
Q 043077           42 VTEVINLFTRDAENAITQARDSLQ---EPSVD---YDKLIAAVHQLRGASSSIGGCRVALACRELRSA---IDDKDKERC  112 (150)
Q Consensus        42 ~~~li~~Fl~d~~~~l~~L~~Al~---~~~~D---~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~~~~~  112 (150)
                      ..+++..|+++++++|..|...+.   +++.|   ...+.+.+|+|||||+++|...+..+|-.+|..   .+.|...--
T Consensus         9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~   88 (144)
T 3kyj_A            9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD   88 (144)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            468899999999999999999873   33334   457899999999999999999999999999986   466655444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 043077          113 NEILQRIVEEYQTLHVNLAHILN  135 (150)
Q Consensus       113 ~~~l~~l~~ef~~~~~~L~~~l~  135 (150)
                      ..+++.+-..++.++..++.+-.
T Consensus        89 ~~l~dlll~~~D~l~~lv~~~~~  111 (144)
T 3kyj_A           89 GEIVEILLFASDTLRAMLEETAA  111 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc
Confidence            56777777777776666665543

>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}

Probab=98.67  E-value=3.5e-08  Score=77.43  Aligned_cols=90  Identities=13%  Similarity=0.252  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhc---CCCCCH---HHHHHHHHHhhccccccCHHHHHHHHHHHHHh---hhhcCHHHHH
Q 043077           43 TEVINLFTRDAENAITQARDSLQ---EPSVDY---DKLIAAVHQLRGASSSIGGCRVALACRELRSA---IDDKDKERCN  113 (150)
Q Consensus        43 ~~li~~Fl~d~~~~l~~L~~Al~---~~~~D~---~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~~~~~~  113 (150)
                      .+++..|++++.++|..|+..+-   +++.|.   ..+.|.+|+|||||+.+|...+..+|-.+|..   .|+|...--.
T Consensus         6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~   85 (225)
T 2lp4_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT   85 (225)
T ss_dssp             GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence            36789999999999999999863   343443   57789999999999999999999999999976   4566433334


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 043077          114 EILQRIVEEYQTLHVNLAH  132 (150)
Q Consensus       114 ~~l~~l~~ef~~~~~~L~~  132 (150)
                      .+++.+-..++.++..+..
T Consensus        86 ~~~~ll~~~~D~l~~~l~~  104 (225)
T 2lp4_A           86 DIINLFLETKDIMQEQLDA  104 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444443

>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13

Probab=80.75  E-value=4.1  Score=30.53  Aligned_cols=81  Identities=14%  Similarity=0.196  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHhhhccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhhcccc
Q 043077            8 QELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENA-ITQARDSLQEPSVDYDKLIAAVHQLRGASS   86 (150)
Q Consensus         8 ~~~~~~~~~~~d~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~-l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa   86 (150)
                      ..+.+++.++|.+.=....+..++.+    +|+|=   ...|++.+... +..|..|..++  |.+.|+.+         
T Consensus        23 ~~~~~~~~~~f~~s~~~~~l~~i~~~----dp~Fd---~~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~---------   84 (194)
T 2cw9_A           23 DKVTDLLGGLFSKTEMSEVLTEILRV----DPAFD---KDRFLKQCENDIIPNVLEAMISG--ELDILKDW---------   84 (194)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHHHHH----CTTCC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHH---------
T ss_pred             hhhhhhhccccCCCHHHHHHHHHHhh----CCCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHh---------
Confidence            34445555666655555556677766    45664   58899999998 79999999986  89999988         


Q ss_pred             ccCHHHHHHHHHHHHHhhhhc
Q 043077           87 SIGGCRVALACRELRSAIDDK  107 (150)
Q Consensus        87 ~iGA~~l~~~c~~lE~~~~~~  107 (150)
                       +.-.-...++..+......|
T Consensus        85 -~t~~~~~~~~~~i~~r~~~g  104 (194)
T 2cw9_A           85 -CYEATYSQLAHPIQQAKALG  104 (194)
T ss_dssp             -BCHHHHHHHHHHHHHHHHTT
T ss_pred             -cCHHHHHHHHHHHHHHHHCC
Confidence             55566666777777665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1yvia1	142	a.24.10.2 (A:2-143) Histidine-containing phosphotr	1e-25
d1sr2a_	116	a.24.10.4 (A:) Sensor-like histidine kinase YojN,	2e-11
d2a0ba_	118	a.24.10.1 (A:) Aerobic respiration control sensor	7e-11
d1y6da_	114	a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio h	8e-07
d2r25a1	166	a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Bak	3e-06
d2ooca1	104	a.24.10.6 (A:8-111) Histidine phosphotransferase S	0.003

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 142

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 93.1 bits (231), Expect = 1e-25
 Identities = 46/140 (32%), Positives = 78/140 (55%), Gaps = 1/140 (0%)

Query: 4   TSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQS-PLFVTEVINLFTRDAENAITQARD 62
            +L+ +L   + S+  QG++D  F  L  +Q++   P FV+EV+ LF  DA+  I +   
Sbjct: 3   AALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIAT 62

Query: 63  SLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEE 122
            L++P V++DK+ A VHQL+G+S+S+G  +V   C + R    DK ++ C   L  +  +
Sbjct: 63  LLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRND 122

Query: 123 YQTLHVNLAHILNLGRQILA 142
           +  L      +L L +QI A
Sbjct: 123 FYDLRNKFQTMLQLEQQIQA 142

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 116

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 55.4 bits (133), Expect = 2e-11
 Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 2/117 (1%)

Query: 10  LNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSV 69
           +   V  L E  +            ++ + L  +    LF     + + +          
Sbjct: 1   MQEAVLQLIEVQLAQEEVTESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATS-- 58

Query: 70  DYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTL 126
           D+  L    H+L+G  + +        C  L   I +KD     + +  I    ++L
Sbjct: 59  DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSYVKSL 115

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]} Length = 118

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

 Score = 53.8 bits (129), Expect = 7e-11
 Identities = 17/107 (15%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 18  REQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAA 77
           + + +LD     L +      P  +T+ + +F +     ++    +L     D   ++  
Sbjct: 2   KSEALLD--IPMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEE 57

Query: 78  VHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQ 124
            H+++GA+ S+G   +    ++++S      ++   E ++ + EE++
Sbjct: 58  GHKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWR 104

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]} Length = 114

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

 Score = 43.2 bits (101), Expect = 8e-07
 Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 2/110 (1%)

Query: 26  NFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGAS 85
           N   +  +  +     V  ++++F  + ++ I    +           L    H L+ ++
Sbjct: 7   NQQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSA 64

Query: 86  SSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILN 135
           +S G  R+      +         +        ++              N
Sbjct: 65  ASFGADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSWTN 114

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.4 bits (99), Expect = 3e-06
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 1/92 (1%)

Query: 36  DQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVAL 95
           D    F   +I  F   A+    Q +  L     +  +L    H L+G+S+++G  R+A 
Sbjct: 21  DDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEK-NLTELDNLGHFLKGSSAALGLQRIAW 79

Query: 96  ACRELRSAIDDKDKERCNEILQRIVEEYQTLH 127
            C  +++     +    N+         +++ 
Sbjct: 80  VCERIQNLGRKMEHFFPNKTELVNTLSDKSII 111

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]} Length = 104

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

 Score = 33.1 bits (75), Expect = 0.003
 Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 10/99 (10%)

Query: 26  NFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGAS 85
           +F  L         +   EV+ LF   A                 +     AVH ++GA+
Sbjct: 4   DFAYLEGFAAGDFAVVD-EVLALFREQAALWAPMLDP-------THPGWKDAVHTVKGAA 55

Query: 86  SSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQ 124
             +G   +   C    +    +  E     L   + +  
Sbjct: 56  RGVGAFNLGEVCERCEAGQ--ESLEGVRTALDAALLDIA 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1yvia1	142	Histidine-containing phosphotransfer protein HP1 {	100.0
d2a0ba_	118	Aerobic respiration control sensor protein, ArcB {	99.9
d2r25a1	166	Phosphorelay protein ypd1 {Baker's yeast (Saccharo	99.89
d1y6da_	114	Phosphorelay protein luxU {Vibrio harveyi [TaxId:	99.85
d1sr2a_	116	Sensor-like histidine kinase YojN, C-terminal doma	99.82
d2ooca1	104	Histidine phosphotransferase ShpA {Caulobacter cre	99.71
d1tqga_	105	Chemotaxis protein CheA P1 domain {Thermotoga mari	99.04
d1i5na_	128	Chemotaxis protein CheA P1 domain {Salmonella typh	98.96
d2cw9a1	182	Translocase of inner mitochondrial membrane TIMM44	88.77
d2di0a1	63	Activating signal cointegrator 1 complex subunit 2	82.05

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=100.00  E-value=4.7e-36  Score=220.91  Aligned_cols=141  Identities=33%  Similarity=0.607  Sum_probs=133.6

Q ss_pred             chhHHHHHHHHHHHHHhhhccchhHHHHHhhhhcc-CCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 043077            2 VGTSLQQELNNFVRSLREQGILDHNFDTLSRIQND-QSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQ   80 (150)
Q Consensus         2 ~~~~l~~~~~~~~~~~~d~g~lD~~~~~L~~L~~~-~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~   80 (150)
                      |.++||+|+.++++|++++|++|.+|.++..|.++ ++|+|+.+|+..|++|+++.|..|+++++.++.|+..+++.||+
T Consensus         1 a~~~l~~~~~~~~~~~~~~g~lD~~f~~l~~l~~~~~~~~fl~eli~~Fl~~~~~~l~~l~~al~~~~~D~~~~~~~aH~   80 (142)
T d1yvia1           1 AAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQ   80 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhHHhcccccHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            46899999999999999999999999999999875 57899999999999999999999999998765799999999999


Q ss_pred             hhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 043077           81 LRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNLGRQILA  142 (150)
Q Consensus        81 LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~q~~~  142 (150)
                      |||||+|+||.+++.+|..||.+++.++.+++..++..|+.+|..++..|++|+++++||.+
T Consensus        81 LKGss~~lGa~~l~~~~~~lE~~~~~~~~~~~~~~~~~L~~e~~~l~~~L~~~l~~~~qi~~  142 (142)
T d1yvia1          81 LKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQA  142 (142)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhHHhhccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhC
Confidence            99999999999999999999999999999999999999999999999999999999999964

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=7.1e-24  Score=149.69  Aligned_cols=113  Identities=15%  Similarity=0.252  Sum_probs=103.6

Q ss_pred             hhccchhH-HHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHH
Q 043077           19 EQGILDHN-FDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALAC   97 (150)
Q Consensus        19 d~g~lD~~-~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c   97 (150)
                      .+++||.. +.++...   .||+++.+++..|++++|+.+..|+.++.++  |++.+++.+|+|||||+|+|+.+++.+|
T Consensus         3 ~e~~lD~~~L~~l~~~---~g~~~~~~~l~~F~~~~~~~l~~l~~a~~~~--d~~~~~~~aH~LKgsa~~~G~~~l~~~~   77 (118)
T d2a0ba_           3 SEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQLG   77 (118)
T ss_dssp             HHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            35667764 5555554   7899999999999999999999999999986  8999999999999999999999999999


Q ss_pred             HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043077           98 RELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHILNL  136 (150)
Q Consensus        98 ~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~  136 (150)
                      .+||..++.++.+++..++..|+.+|..+..+|+.|+.-
T Consensus        78 ~~lE~~~~~~~~~~~~~~l~~l~~~~~~~~~~L~~~l~~  116 (118)
T d2a0ba_          78 QQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK  116 (118)
T ss_dssp             HHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999864

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=6.1e-23  Score=153.98  Aligned_cols=115  Identities=18%  Similarity=0.299  Sum_probs=103.1

Q ss_pred             hccchhH-HHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHH
Q 043077           20 QGILDHN-FDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACR   98 (150)
Q Consensus        20 ~g~lD~~-~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~   98 (150)
                      .++||+. |.+|..|. +++|+|+.+||..|++++|..+.+|+.|+.+. .|+..++++||+|||||+||||.+++.+|.
T Consensus         5 ~~~id~~~l~~l~~m~-~~d~~f~~~li~~F~~~~~~~~~~l~~al~~~-~d~~~l~~~aH~lKgss~~~G~~~~~~~~~   82 (166)
T d2r25a1           5 SEIINWTILNEIISMD-DDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGE-KNLTELDNLGHFLKGSSAALGLQRIAWVCE   82 (166)
T ss_dssp             SCSSCHHHHHHHHHTT-TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            5789996 99999995 57899999999999999999999999999653 389999999999999999999999999999


Q ss_pred             HHHHhhhhcC--------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043077           99 ELRSAIDDKD--------------------------------------------KERCNEILQRIVEEYQTLHVNLAHIL  134 (150)
Q Consensus        99 ~lE~~~~~~~--------------------------------------------~~~~~~~l~~l~~ef~~~~~~L~~~l  134 (150)
                      .||++++.++                                            +..+...+.+.+.+|..++..|..|+
T Consensus        83 ~ie~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~l~~I~~~L~~a~d~~~~a~~~L~~~~  162 (166)
T d2r25a1          83 RIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSKYY  162 (166)
T ss_dssp             HHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcccccchhHHHHHHHHHHHHHHHHHhhhhcccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988642                                            34467888899999999999999997


Q ss_pred             Hh
Q 043077          135 NL  136 (150)
Q Consensus       135 ~~  136 (150)
                      +.
T Consensus       163 ~~  164 (166)
T d2r25a1         163 NT  164 (166)
T ss_dssp             TS
T ss_pred             cc
Confidence            64

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

Probab=99.85  E-value=1.3e-23  Score=147.32  Aligned_cols=111  Identities=11%  Similarity=0.120  Sum_probs=102.0

Q ss_pred             hhccchhH-HHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHH
Q 043077           19 EQGILDHN-FDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALAC   97 (150)
Q Consensus        19 d~g~lD~~-~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c   97 (150)
                      ++++||.. +++|...   .|++++.+++..|+++.|..+..|++++.++  |++.+++.||+|||||+|+||.+|+.+|
T Consensus         2 ~~~lld~~~l~~L~~~---~G~e~~~~ll~~F~~~~~~~~~~L~~a~~~~--d~~~l~~~aH~LKGsa~~~Ga~~L~~~~   76 (114)
T d1y6da_           2 NTDVLNQQKIEELSAE---IGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERA   76 (114)
T ss_dssp             CCTTTTTTHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred             CHHHCCHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            56788885 6666544   6689999999999999999999999999975  8999999999999999999999999999


Q ss_pred             HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043077           98 RELRSAIDDKDKERCNEILQRIVEEYQTLHVNLAHIL  134 (150)
Q Consensus        98 ~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l  134 (150)
                      ..||..++.++.+.+...+..+...+.+++.+++.|.
T Consensus        77 ~~lE~~~~~~~~~~~~~~~~~l~~~~~~t~~a~r~w~  113 (114)
T d1y6da_          77 IAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSWT  113 (114)
T ss_dssp             HHHHHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999885

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.2e-21  Score=138.57  Aligned_cols=86  Identities=17%  Similarity=0.276  Sum_probs=81.8

Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Q 043077           39 PLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACRELRSAIDDKDKERCNEILQR  118 (150)
Q Consensus        39 ~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~  118 (150)
                      +.|+.+++.+|++++|..+..|+.|++++  |+..+++.||+|||||+|+||.+++.+|..||..+++++.+.+..++.+
T Consensus        30 ~~~~~~~~~lF~~~~p~~l~~L~~a~~~~--D~~~l~~~aH~LKGs~~~~Ga~~l~~~~~~lE~~~~~~~~~~~~~ll~~  107 (116)
T d1sr2a_          30 QLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISD  107 (116)
T ss_dssp             HHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            55888999999999999999999999975  8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 043077          119 IVEEYQTL  126 (150)
Q Consensus       119 l~~ef~~~  126 (150)
                      |+.++.++
T Consensus       108 le~~~~~l  115 (116)
T d1sr2a_         108 IDSYVKSL  115 (116)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988764

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.71  E-value=5.8e-18  Score=117.73  Aligned_cols=77  Identities=21%  Similarity=0.288  Sum_probs=65.6

Q ss_pred             ccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccccccCHHHHHHHHHHH
Q 043077           21 GILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARDSLQEPSVDYDKLIAAVHQLRGASSSIGGCRVALACREL  100 (150)
Q Consensus        21 g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGSSa~iGA~~l~~~c~~l  100 (150)
                      |-||.  +.|.++-+ |+++|+.+|+..|+++++..+..+    .   .|++.+++.+|+|||||+||||.+|+.+|.+|
T Consensus         1 gaiD~--~~L~~~~g-gd~~l~~~ll~~F~e~~~~~~~~l----~---~d~~~~~~~aH~LKGsa~~iGa~~L~~~a~~l   70 (104)
T d2ooca1           1 GAVDF--AYLEGFAA-GDFAVVDEVLALFREQAALWAPML----D---PTHPGWKDAVHTVKGAARGVGAFNLGEVCERC   70 (104)
T ss_dssp             CCSCH--HHHHHHTT-TCHHHHHHHHHHHHHHHHHHGGGC----S---TTSTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CccCH--HHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHH----c---cCHHHHHHHHHHHHhHHHHcCHHHHHHHHHHH
Confidence            45664  46666754 789999999999999999987554    2   27889999999999999999999999999999


Q ss_pred             HHhhhhc
Q 043077          101 RSAIDDK  107 (150)
Q Consensus       101 E~~~~~~  107 (150)
                      |..++.+
T Consensus        71 E~~~~~~   77 (104)
T d2ooca1          71 EAGQESL   77 (104)
T ss_dssp             HTTSSCH
T ss_pred             HHHHHcc
Confidence            9998764

>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=2.8e-10  Score=77.58  Aligned_cols=90  Identities=18%  Similarity=0.370  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHhhccccccCHHHHHHHHHHHHHh---hhhcCHHHHH
Q 043077           43 TEVINLFTRDAENAITQARDSLQE---PSVD---YDKLIAAVHQLRGASSSIGGCRVALACRELRSA---IDDKDKERCN  113 (150)
Q Consensus        43 ~~li~~Fl~d~~~~l~~L~~Al~~---~~~D---~~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~~~~~~  113 (150)
                      .++++.|++++++++..|+..+..   ++.|   ...+.+.+|+|||||+.+|...+..+|..+|..   .+.+....-.
T Consensus         4 ~E~l~~Fl~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~~~~~~~~~~~   83 (105)
T d1tqga_           4 MEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS   83 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchhhcCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            378999999999999999998831   2223   467889999999999999999999999999976   4555443334


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 043077          114 EILQRIVEEYQTLHVNLAH  132 (150)
Q Consensus       114 ~~l~~l~~ef~~~~~~L~~  132 (150)
                      ..+..+...++.++..++.
T Consensus        84 ~~~~~l~~~~d~l~~~l~~  102 (105)
T d1tqga_          84 DLLDKIFAGVDMITRMVDK  102 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555443

>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.96  E-value=9.6e-10  Score=77.18  Aligned_cols=90  Identities=13%  Similarity=0.244  Sum_probs=68.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHhhccccccCHHHHHHHHHHHHHh---hhhcCHHHHHH
Q 043077           44 EVINLFTRDAENAITQARDSL---QEPSVDY---DKLIAAVHQLRGASSSIGGCRVALACRELRSA---IDDKDKERCNE  114 (150)
Q Consensus        44 ~li~~Fl~d~~~~l~~L~~Al---~~~~~D~---~~l~~~aH~LKGSSa~iGA~~l~~~c~~lE~~---~~~~~~~~~~~  114 (150)
                      ++++.|++++.+++..|+..+   .+++.|.   ..+.+.+|+|||||+.+|...+..+|..+|..   .+.+...--..
T Consensus         4 e~~~~F~~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~lr~~~~~~~~~   83 (128)
T d1i5na_           4 DFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTD   83 (128)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHHhhcChHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence            568999999999999999987   3333344   47889999999999999999999999999986   34555443445


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 043077          115 ILQRIVEEYQTLHVNLAHI  133 (150)
Q Consensus       115 ~l~~l~~ef~~~~~~L~~~  133 (150)
                      .+..+...++.++..+..+
T Consensus        84 ~~~~l~~~~d~l~~~l~~~  102 (128)
T d1i5na_          84 IINLFLETKDIMQEQLDAY  102 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5566666666665555543

>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.77  E-value=0.65  Score=32.81  Aligned_cols=85  Identities=14%  Similarity=0.204  Sum_probs=66.3

Q ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHHhhhhccCCchHHHHHHHHHHHhHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 043077            4 TSLQQELNNFVRSLREQGILDHNFDTLSRIQNDQSPLFVTEVINLFTRDAEN-AITQARDSLQEPSVDYDKLIAAVHQLR   82 (150)
Q Consensus         4 ~~l~~~~~~~~~~~~d~g~lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~-~l~~L~~Al~~~~~D~~~l~~~aH~LK   82 (150)
                      .++..++..+..+++.+.=+...+.+++..    +|+|-   ...|+..+.. .+..|-+|...+  |.+.|+.+     
T Consensus         8 ~~~~~~v~~~~~~~~~~~~~~~~l~~i~~~----Dp~F~---~~~Fl~gAk~~~~~~i~~A~~~g--D~~~L~~l-----   73 (182)
T d2cw9a1           8 RALTDKVTDLLGGLFSKTEMSEVLTEILRV----DPAFD---KDRFLKQCENDIIPNVLEAMISG--ELDILKDW-----   73 (182)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHHHHH----CTTCC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHH-----
T ss_pred             hhhhhhhhhhhcCCCCCCHHHHHHHHHHhh----CCCCC---HHHHHHHHHHHHHHHHHHHHHcc--CHHHHHHH-----
Confidence            466777777888888887777767788877    46665   7889999986 789999999976  88999988     


Q ss_pred             ccccccCHHHHHHHHHHHHHhhhhc
Q 043077           83 GASSSIGGCRVALACRELRSAIDDK  107 (150)
Q Consensus        83 GSSa~iGA~~l~~~c~~lE~~~~~~  107 (150)
                           ++-.-+..++.++......|
T Consensus        74 -----lt~~~~~~f~~~i~~r~~~g   93 (182)
T d2cw9a1          74 -----CYEATYSQLAHPIQQAKALG   93 (182)
T ss_dssp             -----BCHHHHHHHHHHHHHHHHTT
T ss_pred             -----hhHHHHHHHHHHHHHHHHCC
Confidence                 77777777777777765554

>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Activating signal cointegrator 1 complex subunit 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.05  E-value=0.56  Score=28.10  Aligned_cols=40  Identities=18%  Similarity=0.312  Sum_probs=34.8

Q ss_pred             chhHHHHHhhhhccCCchHHHHHHHHHHHhHHHHHHHHHH
Q 043077           23 LDHNFDTLSRIQNDQSPLFVTEVINLFTRDAENAITQARD   62 (150)
Q Consensus        23 lD~~~~~L~~L~~~~~~df~~~li~~Fl~d~~~~l~~L~~   62 (150)
                      +|..+.+++.|-.+-|+.|+...++-|-.|+++.+..|=+
T Consensus         6 l~s~I~qV~Dl~PdLG~GFi~~~L~~Y~~n~E~vI~~lLe   45 (63)
T d2di0a1           6 LDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE   45 (63)
T ss_dssp             HHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            4556789999999999999999999999999999987643