Citrus Sinensis ID: 043093

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRDVDWDYFRYPSFHLF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHccccccEcccccEEcc
Coil and Loop (DISEMBL)
KLTKELcdviedyslvnfstldiqdKESVAKLVKLIDksngyifagmdasavEFSKIAvrdvdwdyfrypsfhlf
Flexible Loop (DISEMBL)
kltkelcdviedyslvnfstldiqdkeSVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRDVDWDYFRYPSFHLF
Low Complexity Region (SEG)
KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRDVDWDYFRYPSFHLF
Disordered region (IsUnstruct)
*****LCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRDVDWDYFRYPSFH**
Disordered Region (DISOPRED)
KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRDVDWDYFRYPSFHLF
Disordered Region (DISEMBL)
KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRDVDWDYFRYPSFHLF
Disordered Region (DISPRO)
KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRDVDWDYFRYPSFHLF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRDVDWDYFRYPSFHLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q54TE7	315	GPN-loop GTPase 2 homolog	yes	no	0.906	0.215	0.463	3e-10
Q4R579	310	GPN-loop GTPase 2 OS=Maca	N/A	no	0.88	0.212	0.393	7e-09
Q9H9Y4	310	GPN-loop GTPase 2 OS=Homo	yes	no	0.88	0.212	0.393	1e-08
A6H7F2	310	GPN-loop GTPase 2 OS=Bos	yes	no	0.88	0.212	0.393	2e-08
Q58DD9	310	GPN-loop GTPase 2 OS=Sus	yes	no	0.88	0.212	0.393	3e-08
Q8VEJ1	310	GPN-loop GTPase 2 OS=Mus	yes	no	0.88	0.212	0.363	8e-08
D4A7C0	310	GPN-loop GTPase 2 OS=Ratt	yes	no	0.706	0.170	0.433	1e-07
Q6PUR6	311	GPN-loop GTPase 2 OS=Dani	yes	no	0.866	0.209	0.369	5e-07
Q5BJ53	303	GPN-loop GTPase 2 OS=Xeno	yes	no	0.933	0.231	0.338	1e-05
Q08726	347	GPN-loop GTPase 2 homolog	yes	no	0.68	0.146	0.411	2e-05

>sp|Q54TE7|GPN2_DICDI GPN-loop GTPase 2 homolog OS=Dictyostelium discoideum GN=gpn2 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           KL K +  VIED+SLV+F  L+I DK+SVA L+  IDKSNGYI+  +D +     +I  R
Sbjct: 213 KLNKAIAGVIEDFSLVSFIPLNIMDKKSVANLIASIDKSNGYIYGSLDTNTA-ILEIQER 271

Query: 61  DVDWDYFRY 69
           +  W++ +Y
Sbjct: 272 ETQWNFDKY 280

Dictyostelium discoideum (taxid: 44689)

>sp|Q4R579|GPN2_MACFA GPN-loop GTPase 2 OS=Macaca fascicularis GN=GPN2 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 44/66 (66%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           +L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A  
Sbjct: 220 QLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFGAQEQRSLEAMMSAAM 279

Query: 61  DVDWDY 66
             D+ +
Sbjct: 280 GADFHF 285

Macaca fascicularis (taxid: 9541)

>sp|Q9H9Y4|GPN2_HUMAN GPN-loop GTPase 2 OS=Homo sapiens GN=GPN2 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 44/66 (66%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           +L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A  
Sbjct: 220 QLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFRAQEQRSLEAMMSAAM 279

Query: 61  DVDWDY 66
             D+ +
Sbjct: 280 GADFHF 285

Homo sapiens (taxid: 9606)

>sp|A6H7F2|GPN2_BOVIN GPN-loop GTPase 2 OS=Bos taurus GN=GPN2 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 44/66 (66%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           +L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A  
Sbjct: 220 QLNEKLVQLIEDYSLVSFIPLNIQDKESIQQVLQAVDKANGYCFGVQEQRSLEAMMSAAM 279

Query: 61  DVDWDY 66
             D+ +
Sbjct: 280 GADFHF 285

Bos taurus (taxid: 9913)

>sp|Q58DD9|GPN2_PIG GPN-loop GTPase 2 OS=Sus scrofa GN=GPN2 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 44/66 (66%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           +L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A  
Sbjct: 220 QLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFGVQEQRSLEAMMSAAV 279

Query: 61  DVDWDY 66
             D+ +
Sbjct: 280 GADFHF 285

Sus scrofa (taxid: 9823)

>sp|Q8VEJ1|GPN2_MOUSE GPN-loop GTPase 2 OS=Mus musculus GN=Gpn2 PE=2 SV=2

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 44/66 (66%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           +L ++L  ++EDYSLV+F  L+IQDK+S+ ++++ +DK+NGY F   +  ++E    A  
Sbjct: 220 QLNEKLVQLVEDYSLVSFIPLNIQDKDSIQRVLQAVDKANGYCFGVQEQRSLEAMMSAAM 279

Query: 61  DVDWDY 66
             D+ +
Sbjct: 280 GADFHF 285

Mus musculus (taxid: 10090)

>sp|D4A7C0|GPN2_RAT GPN-loop GTPase 2 OS=Rattus norvegicus GN=Gpn2 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 40/53 (75%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVE 53
           +L ++L  +IEDYSLV+F  L+IQDK+S+ ++++ +DK+NGY F   +  ++E
Sbjct: 220 QLNEKLVQLIEDYSLVSFIPLNIQDKDSIQRVLQAVDKANGYCFGVQEQRSLE 272

Rattus norvegicus (taxid: 10116)

>sp|Q6PUR6|GPN2_DANRE GPN-loop GTPase 2 OS=Danio rerio GN=gpn2 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 43/65 (66%)

Query: 2   LTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRD 61
           L  +L +VI+DYSLV+F  L++QDKES+ ++++ +DK+NGY F  ++   ++    A   
Sbjct: 222 LNVKLAEVIQDYSLVSFVPLNVQDKESMMQVLRTVDKANGYCFGDLEERNLQAMMSAAVG 281

Query: 62  VDWDY 66
            D+ +
Sbjct: 282 ADFQF 286

Danio rerio (taxid: 7955)

>sp|Q5BJ53|GPN2_XENTR GPN-loop GTPase 2 OS=Xenopus tropicalis GN=gpn2 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           +L ++L +VI+DY LV F  L I+D++S+  ++  +DK++G+ F     S      +AV 
Sbjct: 229 RLHEKLAEVIQDYGLVTFMPLSIKDEKSLRLVLSAVDKASGFCFGETKQSLGNLMSVAV- 287

Query: 61  DVDWDYFRYPS 71
             D+ +  YPS
Sbjct: 288 GADFQFTSYPS 298

Xenopus tropicalis (taxid: 8364)

>sp|Q08726|GPN2_YEAST GPN-loop GTPase 2 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR262W PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASA 51
           KLT+ + +++ D++LV+F  L + DKES+  L  +IDK+NGYIF   +   
Sbjct: 220 KLTETIKELVSDFNLVSFEVLSVDDKESMINLQGVIDKANGYIFGASEVGG 270

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
255538048	296	XPA-binding protein, putative [Ricinus c	0.933	0.236	0.842	1e-27
302142194	300	unnamed protein product [Vitis vinifera]	0.933	0.233	0.828	7e-27
147785330	320	hypothetical protein VITISV_013941 [Viti	0.933	0.218	0.828	7e-27
297808231	291	hypothetical protein ARALYDRAFT_326545 [	1.0	0.257	0.773	3e-26
9757818	291	unnamed protein product [Arabidopsis tha	0.933	0.240	0.828	6e-26
357516611	296	GPN-loop GTPase [Medicago truncatula] gi	0.96	0.243	0.791	8e-26
357516609	373	GPN-loop GTPase [Medicago truncatula] gi	0.96	0.193	0.791	9e-26
357493993	405	GPN-loop GTPase [Medicago truncatula] gi	0.986	0.182	0.770	2e-25
225458848	320	PREDICTED: GPN-loop GTPase 2-like [Vitis	0.906	0.212	0.823	3e-25
224127260	301	predicted protein [Populus trichocarpa]	0.906	0.225	0.794	5e-25

>gi|255538048|ref|XP_002510089.1| XPA-binding protein, putative [Ricinus communis] gi|223550790|gb|EEF52276.1| XPA-binding protein, putative [Ricinus communis]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 67/70 (95%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           KLTKELC+VIEDYSLV+F+TLDIQDKESV  LVKLIDK+NGYIFAG++ASAVEFSK+AVR
Sbjct: 215 KLTKELCEVIEDYSLVDFTTLDIQDKESVGNLVKLIDKTNGYIFAGVEASAVEFSKLAVR 274

Query: 61  DVDWDYFRYP 70
            VDWDY+RYP
Sbjct: 275 PVDWDYYRYP 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142194|emb|CBI19397.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 64/70 (91%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           KLTKELC+VIEDYSLVNF+TLDIQDKESV  LVKLIDKSNGYIFAG++ SAVEFSKIA  
Sbjct: 215 KLTKELCEVIEDYSLVNFTTLDIQDKESVGNLVKLIDKSNGYIFAGIEGSAVEFSKIAAG 274

Query: 61  DVDWDYFRYP 70
            +DWDY+RYP
Sbjct: 275 PLDWDYYRYP 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785330|emb|CAN72850.1| hypothetical protein VITISV_013941 [Vitis vinifera]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 64/70 (91%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           KLTKELC+VIEDYSLVNF+TLDIQDKESV  LVKLIDKSNGYIFAG++ SAVEFSKIA  
Sbjct: 215 KLTKELCEVIEDYSLVNFTTLDIQDKESVGNLVKLIDKSNGYIFAGIEGSAVEFSKIAAG 274

Query: 61  DVDWDYFRYP 70
            +DWDY+RYP
Sbjct: 275 PLDWDYYRYP 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808231|ref|XP_002871999.1| hypothetical protein ARALYDRAFT_326545 [Arabidopsis lyrata subsp. lyrata] gi|297317836|gb|EFH48258.1| hypothetical protein ARALYDRAFT_326545 [Arabidopsis lyrata subsp. lyrata]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 64/75 (85%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           KLTKELC VIEDYSLVNF+TLDIQDKESV  LVKLIDKSNGYIF+G+DAS VE+SKIA+ 
Sbjct: 215 KLTKELCSVIEDYSLVNFTTLDIQDKESVGDLVKLIDKSNGYIFSGIDASVVEYSKIAIG 274

Query: 61  DVDWDYFRYPSFHLF 75
             DWDY RYP F + 
Sbjct: 275 QTDWDYNRYPFFRIM 289

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9757818|dbj|BAB08336.1| unnamed protein product [Arabidopsis thaliana]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 62/70 (88%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           KLTKELC VIEDYSLVNF+TLDIQDKESV  LVKLIDKSNGYIFAG+DAS VE+SKIA+ 
Sbjct: 215 KLTKELCSVIEDYSLVNFTTLDIQDKESVGDLVKLIDKSNGYIFAGIDASVVEYSKIAIG 274

Query: 61  DVDWDYFRYP 70
             DWDY RYP
Sbjct: 275 QTDWDYNRYP 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516611|ref|XP_003628594.1| GPN-loop GTPase [Medicago truncatula] gi|355522616|gb|AET03070.1| GPN-loop GTPase [Medicago truncatula]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/72 (79%), Positives = 64/72 (88%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           KLTKELC+V+E YSLVNF+TLDIQDKESV  LVKLIDK+NGYIFA +DASAVEFSKIA+ 
Sbjct: 215 KLTKELCEVVEHYSLVNFTTLDIQDKESVGNLVKLIDKTNGYIFASIDASAVEFSKIAMG 274

Query: 61  DVDWDYFRYPSF 72
             DWDY+RYP F
Sbjct: 275 APDWDYYRYPFF 286

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516609|ref|XP_003628593.1| GPN-loop GTPase [Medicago truncatula] gi|355522615|gb|AET03069.1| GPN-loop GTPase [Medicago truncatula]

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 57/72 (79%), Positives = 64/72 (88%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           KLTKELC+V+E YSLVNF+TLDIQDKESV  LVKLIDK+NGYIFA +DASAVEFSKIA+ 
Sbjct: 215 KLTKELCEVVEHYSLVNFTTLDIQDKESVGNLVKLIDKTNGYIFASIDASAVEFSKIAMG 274

Query: 61  DVDWDYFRYPSF 72
             DWDY+RYP F
Sbjct: 275 APDWDYYRYPFF 286

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493993|ref|XP_003617285.1| GPN-loop GTPase [Medicago truncatula] gi|355518620|gb|AET00244.1| GPN-loop GTPase [Medicago truncatula]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 64/74 (86%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           KLTKELC+V+E Y LVNF+TLDIQDKESV  LVKLIDK+NGYIFA +DASAVEFSKIA+ 
Sbjct: 242 KLTKELCEVVEHYGLVNFTTLDIQDKESVGNLVKLIDKTNGYIFASIDASAVEFSKIAMG 301

Query: 61  DVDWDYFRYPSFHL 74
             DWDY+RYP F L
Sbjct: 302 APDWDYYRYPFFFL 315

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458848|ref|XP_002283335.1| PREDICTED: GPN-loop GTPase 2-like [Vitis vinifera]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/68 (82%), Positives = 62/68 (91%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           KLTKELC+VIEDYSLVNF+TLDIQDKESV  LVKLIDKSNGYIFAG++ SAVEFSKIA  
Sbjct: 215 KLTKELCEVIEDYSLVNFTTLDIQDKESVGNLVKLIDKSNGYIFAGIEGSAVEFSKIAAG 274

Query: 61  DVDWDYFR 68
            +DWDY+R
Sbjct: 275 PLDWDYYR 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127260|ref|XP_002320027.1| predicted protein [Populus trichocarpa] gi|222860800|gb|EEE98342.1| predicted protein [Populus trichocarpa]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 65/68 (95%)

Query: 1   KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
           KLTKELCDV++D+SLV+F+TLDIQDKESV  LVKLID++NGYIFAG+++SAVEFSKIAVR
Sbjct: 215 KLTKELCDVVQDFSLVDFTTLDIQDKESVGNLVKLIDRTNGYIFAGVESSAVEFSKIAVR 274

Query: 61  DVDWDYFR 68
            VDWDY+R
Sbjct: 275 PVDWDYYR 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
TAIR|locus:2176357	298	QQT1 "QUATRE-QUART 1" [Arabido	0.906	0.228	0.823	2.9e-25
DICTYBASE|DDB_G0281787	315	gpn2 "GPN-loop GTPase 2" [Dict	0.906	0.215	0.463	1.4e-11
UNIPROTKB|Q5JYG3	131	GPN2 "GPN-loop GTPase 2" [Homo	0.88	0.503	0.393	1.4e-09
UNIPROTKB|Q9H9Y4	310	GPN2 "GPN-loop GTPase 2" [Homo	0.88	0.212	0.393	5e-09
UNIPROTKB|A6H7F2	310	GPN2 "GPN-loop GTPase 2" [Bos	0.88	0.212	0.393	1.1e-08
UNIPROTKB|E2QT70	310	GPN2 "Uncharacterized protein"	0.88	0.212	0.393	1.1e-08
UNIPROTKB|F6UWV4	310	GPN2 "Uncharacterized protein"	0.88	0.212	0.393	1.1e-08
UNIPROTKB|Q58DD9	310	GPN2 "GPN-loop GTPase 2" [Sus	0.88	0.212	0.393	1.4e-08
MGI|MGI:2140368	310	Gpn2 "GPN-loop GTPase 2" [Mus	0.88	0.212	0.363	2.3e-08
RGD|1311749	310	Gpn2 "GPN-loop GTPase 2" [Ratt	0.88	0.212	0.378	3.8e-08

TAIR|locus:2176357 QQT1 "QUATRE-QUART 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 56/68 (82%), Positives = 60/68 (88%)

Query:     1 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
             KLTKELC VIEDYSLVNF+TLDIQDKESV  LVKLIDKSNGYIFAG+DAS VE+SKIA+ 
Sbjct:   215 KLTKELCSVIEDYSLVNFTTLDIQDKESVGDLVKLIDKSNGYIFAGIDASVVEYSKIAIG 274

Query:    61 DVDWDYFR 68
               DWDY R
Sbjct:   275 QTDWDYNR 282

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0005874 "microtubule" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

DICTYBASE|DDB_G0281787 gpn2 "GPN-loop GTPase 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 162 (62.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 32/69 (46%), Positives = 46/69 (66%)

Query:     1 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
             KL K +  VIED+SLV+F  L+I DK+SVA L+  IDKSNGYI+  +D +     +I  R
Sbjct:   213 KLNKAIAGVIEDFSLVSFIPLNIMDKKSVANLIASIDKSNGYIYGSLDTNTA-ILEIQER 271

Query:    61 DVDWDYFRY 69
             +  W++ +Y
Sbjct:   272 ETQWNFDKY 280

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q5JYG3 GPN2 "GPN-loop GTPase 2" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 26/66 (39%), Positives = 44/66 (66%)

Query:     1 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
             +L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A  
Sbjct:    41 QLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFRAQEQRSLEAMMSAAM 100

Query:    61 DVDWDY 66
               D+ +
Sbjct:   101 GADFHF 106

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q9H9Y4 GPN2 "GPN-loop GTPase 2" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 26/66 (39%), Positives = 44/66 (66%)

Query:     1 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
             +L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A  
Sbjct:   220 QLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFRAQEQRSLEAMMSAAM 279

Query:    61 DVDWDY 66
               D+ +
Sbjct:   280 GADFHF 285

GO:0005525 "GTP binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A6H7F2 GPN2 "GPN-loop GTPase 2" [Bos taurus (taxid:9913)]

 Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 26/66 (39%), Positives = 44/66 (66%)

Query:     1 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
             +L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A  
Sbjct:   220 QLNEKLVQLIEDYSLVSFIPLNIQDKESIQQVLQAVDKANGYCFGVQEQRSLEAMMSAAM 279

Query:    61 DVDWDY 66
               D+ +
Sbjct:   280 GADFHF 285

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|E2QT70 GPN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 26/66 (39%), Positives = 44/66 (66%)

Query:     1 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
             +L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A  
Sbjct:   220 QLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFGIQEQRSLEAMMSAAM 279

Query:    61 DVDWDY 66
               D+ +
Sbjct:   280 GADFHF 285

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F6UWV4 GPN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 26/66 (39%), Positives = 44/66 (66%)

Query:     1 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
             +L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A  
Sbjct:   220 QLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFGIQEQRSLEAMMSAAM 279

Query:    61 DVDWDY 66
               D+ +
Sbjct:   280 GADFHF 285

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q58DD9 GPN2 "GPN-loop GTPase 2" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 26/66 (39%), Positives = 44/66 (66%)

Query:     1 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
             +L ++L  +IEDYSLV+F  L+IQDKES+ ++++ +DK+NGY F   +  ++E    A  
Sbjct:   220 QLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCFGVQEQRSLEAMMSAAV 279

Query:    61 DVDWDY 66
               D+ +
Sbjct:   280 GADFHF 285

GO:0005525 "GTP binding" evidence=IEA

MGI|MGI:2140368 Gpn2 "GPN-loop GTPase 2" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 24/66 (36%), Positives = 44/66 (66%)

Query:     1 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
             +L ++L  ++EDYSLV+F  L+IQDK+S+ ++++ +DK+NGY F   +  ++E    A  
Sbjct:   220 QLNEKLVQLVEDYSLVSFIPLNIQDKDSIQRVLQAVDKANGYCFGVQEQRSLEAMMSAAM 279

Query:    61 DVDWDY 66
               D+ +
Sbjct:   280 GADFHF 285

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1311749 Gpn2 "GPN-loop GTPase 2" [Rattus norvegicus (taxid:10116)]

 Score = 131 (51.2 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 25/66 (37%), Positives = 44/66 (66%)

Query:     1 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVR 60
             +L ++L  +IEDYSLV+F  L+IQDK+S+ ++++ +DK+NGY F   +  ++E    A  
Sbjct:   220 QLNEKLVQLIEDYSLVSFIPLNIQDKDSIQRVLQAVDKANGYCFGVQEQRSLEALMSAAV 279

Query:    61 DVDWDY 66
               D+ +
Sbjct:   280 GADFHF 285

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	75
pfam03029	235	pfam03029, ATP_bind_1, Conserved hypothetical ATP	0.001

>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 1   KLTKELCDVIEDYSLV-NFSTLDIQDKESVAKLVKLIDKSNGY 42
           KL + + + ++ + LV  F     +  ES+  L+ LID++  Y
Sbjct: 193 KLNEAIREALDLFYLVPRFLPDARETGESMEDLLTLIDEALQY 235

Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity. Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
KOG1533	290	consensus Predicted GTPase [General function predi	99.79
KOG1534	273	consensus Putative transcription factor FET5 [Tran	99.47
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.75
PRK13768	253	GTPase; Provisional	93.55
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	83.76
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	80.96

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=99.79  E-value=1.1e-19  Score=135.69  Aligned_cols=68  Identities=38%  Similarity=0.687  Sum_probs=65.2

Q ss_pred             ChhHHHHHHhhhCCCcceeeeecCCHHHHHHHHHHHHhhcCcccCCcchhHHHHHHHHhhcCcceeee
Q 043093            1 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMDASAVEFSKIAVRDVDWDYFR   68 (75)
Q Consensus         1 kLn~ai~~lIeDysLV~F~pLdi~deesi~~ll~~ID~a~gY~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (75)
                      |||++||++|+||+||||.||||+|+|||.+|++.||+|+||.|+..|.+....+..++++.+|++.|
T Consensus       213 kLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDkAnGy~f~~~e~~~~~~~~~~a~~~~~~~~~  280 (290)
T KOG1533|consen  213 KLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDKANGYIFGATEQGVGDALWINAVREGLDRYR  280 (290)
T ss_pred             HHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHhccCeEeccchhhhHHHHHHHhhhcccchhh
Confidence            69999999999999999999999999999999999999999999999999888899999999988875

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=99.47  E-value=2.7e-14  Score=106.03  Aligned_cols=48  Identities=38%  Similarity=0.515  Sum_probs=45.9

Q ss_pred             ChhHHHHHHhhhCCCcceeeeecCCHHHHHHHHHHHHhhcCcccCCcc
Q 043093            1 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMD   48 (75)
Q Consensus         1 kLn~ai~~lIeDysLV~F~pLdi~deesi~~ll~~ID~a~gY~~~~~~   48 (75)
                      |||++||.+|+|||||+|+|||.+|||||..+|++||.|+||+++.+-
T Consensus       211 ~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~Ed~E~  258 (273)
T KOG1534|consen  211 KLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYGEDLEP  258 (273)
T ss_pred             HHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhccccCc
Confidence            689999999999999999999999999999999999999999998853

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.75  E-value=2.8e-09  Score=76.93  Aligned_cols=42  Identities=38%  Similarity=0.725  Sum_probs=36.9

Q ss_pred             ChhHHHHHHhhhCCCc-ceeeeecCCHHHHHHHHHHHHhhcCc
Q 043093            1 KLTKELCDVIEDYSLV-NFSTLDIQDKESVAKLVKLIDKSNGY   42 (75)
Q Consensus         1 kLn~ai~~lIeDysLV-~F~pLdi~deesi~~ll~~ID~a~gY   42 (75)
                      +|+++|+++|++|+++ +|+|+++++++++.+|+++||+|+||
T Consensus       196 ~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~y  238 (238)
T PF03029_consen  196 KLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQY  238 (238)
T ss_dssp             HHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhcC
Confidence            4789999999999999 99999999999999999999999998

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK13768 GTPase; Provisional

Probab=93.55  E-value=0.09  Score=37.98  Aligned_cols=45  Identities=18%  Similarity=0.085  Sum_probs=40.2

Q ss_pred             ChhHHHHHHhhhCCCc-ceeeeecCCHHHHHHHHHHHHhhcCcccC
Q 043093            1 KLTKELCDVIEDYSLV-NFSTLDIQDKESVAKLVKLIDKSNGYIFA   45 (75)
Q Consensus         1 kLn~ai~~lIeDysLV-~F~pLdi~deesi~~ll~~ID~a~gY~~~   45 (75)
                      +||++|++++++++.. .++|++..+++.+..|+..|.+.+-.+++
T Consensus       206 ~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~~  251 (253)
T PRK13768        206 LLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGED  251 (253)
T ss_pred             HHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCCC
Confidence            4789999999999864 89999999999999999999999876655

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=83.76  E-value=2.3  Score=29.12  Aligned_cols=40  Identities=25%  Similarity=0.359  Sum_probs=33.4

Q ss_pred             hHHHHHHhhhCCCcceeeeecCCHHHHHHHHHHHHhhc-Ccc
Q 043093            3 TKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSN-GYI   43 (75)
Q Consensus         3 n~ai~~lIeDysLV~F~pLdi~deesi~~ll~~ID~a~-gY~   43 (75)
                      ..++.++.++++ ...+++|++|++++..+...+-+.. |-.
T Consensus        34 ~~~~~~l~~~~~-~~~~~~D~~~~~~v~~~~~~~~~~~~g~i   74 (241)
T PF13561_consen   34 ADALEELAKEYG-AEVIQCDLSDEESVEALFDEAVERFGGRI   74 (241)
T ss_dssp             HHHHHHHHHHTT-SEEEESCTTSHHHHHHHHHHHHHHHCSSE
T ss_pred             HHHHHHHHHHcC-CceEeecCcchHHHHHHHHHHHhhcCCCe
Confidence            456888999988 6689999999999999999887776 444

...

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=80.96  E-value=3.3  Score=31.41  Aligned_cols=41  Identities=24%  Similarity=0.326  Sum_probs=34.6

Q ss_pred             ChhHHHHHHhhhCCCcceeeeecCCHHHHHHHHHHHHhhcC
Q 043093            1 KLTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNG   41 (75)
Q Consensus         1 kLn~ai~~lIeDysLV~F~pLdi~deesi~~ll~~ID~a~g   41 (75)
                      ||-+.+.+|.++.+---.+|+|++++++|..+...|-+-.|
T Consensus        43 ~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~g   83 (259)
T COG0623          43 RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKWG   83 (259)
T ss_pred             HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhhC
Confidence            46678889999998766789999999999999998876444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	3e-04

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262

 Score = 36.2 bits (83), Expect = 3e-04
 Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 5/49 (10%)

Query: 1   KLTKELCDVIED-YSLVNFSTLDIQDKESVAKLVKLIDKSNGYIFAGMD 48
            +  ++C ++ +    V    L  + +E    L  L  +     +    
Sbjct: 215 LMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE----HYCTCG 259

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	84.55

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=84.55  E-value=2  Score=28.43  Aligned_cols=37  Identities=8%  Similarity=0.205  Sum_probs=30.7

Q ss_pred             hHHHHHHhhhCCCcceeeeecCCHHHHHHHHHHHHhh
Q 043093            3 TKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKS   39 (75)
Q Consensus         3 n~ai~~lIeDysLV~F~pLdi~deesi~~ll~~ID~a   39 (75)
                      .+.+.++.+.++=+.++++|++|++++..++..+-+.
T Consensus        53 ~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           53 KDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             HHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            3556777788888999999999999999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	89.52
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	83.86
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	83.57
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	83.25
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	81.97
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	80.15

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.52  E-value=0.15  Score=33.02  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=31.7

Q ss_pred             HHHHHHhhhCCCcceeeeecCCHHHHHHHHHHHHhhcC
Q 043093            4 KELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNG   41 (75)
Q Consensus         4 ~ai~~lIeDysLV~F~pLdi~deesi~~ll~~ID~a~g   41 (75)
                      +++.++....+=+.++++|++|++++..+...+....+
T Consensus        43 ~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~   80 (248)
T d1snya_          43 KELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK   80 (248)
T ss_dssp             HHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred             HHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhh
Confidence            35677888888899999999999999999998865433

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.86  E-value=0.73  Score=30.12  Aligned_cols=42  Identities=14%  Similarity=0.119  Sum_probs=31.9

Q ss_pred             hhHHHHHHhhhCCCcceeeeecCCHHHHHHHHHHHHhhcCcc
Q 043093            2 LTKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNGYI   43 (75)
Q Consensus         2 Ln~ai~~lIeDysLV~F~pLdi~deesi~~ll~~ID~a~gY~   43 (75)
                      |.+...++-+..+=+.++++|++|++++..++..+.+..|-.
T Consensus        44 l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~i   85 (244)
T d1yb1a_          44 LEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV   85 (244)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            344444555555567899999999999999999998876643

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.57  E-value=0.58  Score=30.56  Aligned_cols=42  Identities=19%  Similarity=0.301  Sum_probs=32.9

Q ss_pred             hhHHHHHHhhhCCC-cceeeeecCCHHHHHHHHHHHHhhcCcc
Q 043093            2 LTKELCDVIEDYSL-VNFSTLDIQDKESVAKLVKLIDKSNGYI   43 (75)
Q Consensus         2 Ln~ai~~lIeDysL-V~F~pLdi~deesi~~ll~~ID~a~gY~   43 (75)
                      +.+...++.+.++- +.++++|++|++++..+...+.+..|-.
T Consensus        42 ~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   84 (251)
T d1vl8a_          42 ASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKL   84 (251)
T ss_dssp             HHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            44556677787763 5678999999999999999998776643

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=83.25  E-value=0.9  Score=29.47  Aligned_cols=42  Identities=19%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             hhHHHHHHhhhCC-CcceeeeecCCHHHHHHHHHHHHhhcCcc
Q 043093            2 LTKELCDVIEDYS-LVNFSTLDIQDKESVAKLVKLIDKSNGYI   43 (75)
Q Consensus         2 Ln~ai~~lIeDys-LV~F~pLdi~deesi~~ll~~ID~a~gY~   43 (75)
                      +.+...++.+.++ =+.++++|++|++++.+++..+.+..|-.
T Consensus        46 ~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   88 (260)
T d1h5qa_          46 AVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPI   88 (260)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCSE
T ss_pred             HHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4455667777766 36788999999999999999998876644

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=81.97  E-value=0.9  Score=29.60  Aligned_cols=36  Identities=25%  Similarity=0.469  Sum_probs=27.9

Q ss_pred             HHHHhhhCCCcceeeeecCCHHHHHHHHHHHHhhcC
Q 043093            6 LCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNG   41 (75)
Q Consensus         6 i~~lIeDysLV~F~pLdi~deesi~~ll~~ID~a~g   41 (75)
                      +++-+...+-+.|+++|++|++++.+++..+-+..|
T Consensus        46 ~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1          46 VCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             HHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            344455667788999999999999999988765433

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.15  E-value=1.2  Score=28.86  Aligned_cols=39  Identities=23%  Similarity=0.321  Sum_probs=29.7

Q ss_pred             hHHHHHHhhhCCCcceeeeecCCHHHHHHHHHHHHhhcC
Q 043093            3 TKELCDVIEDYSLVNFSTLDIQDKESVAKLVKLIDKSNG   41 (75)
Q Consensus         3 n~ai~~lIeDysLV~F~pLdi~deesi~~ll~~ID~a~g   41 (75)
                      .++..++-....=+.++++|++|++++..+...+-+-.|
T Consensus        42 ~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1          42 QAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             HHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            344555555556688999999999999999888866544