Citrus Sinensis ID: 043122

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MGKIKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEcccccccccccEEcccccccEEEEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEccccccccccccHHHcccEEEccccccccEEEcccccccccHEEEEccccccEEEEEEcccccccccccccccccccccccHcccc
Coil and Loop (DISEMBL)
mgkikkgekkvrkpryafqtrsqvdildDGYRWRKYGqkavknnkfprsyyrcthqgcnvkKQVQRLTKDEGVVVTTyegmhshpierstdNFEHILNQMQIYTSY
Flexible Loop (DISEMBL)
mgkikkgekkvrkpryafqtrsqvdilddgyRWRKYgqkavknnkfprsyyrcthqgcnvkkqvqrltKDEGVVVTTYEGmhshpierstdnfeHILNQMQIYTSY
Low Complexity Region (SEG)
MGkikkgekkvrkPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY
Disordered region (IsUnstruct)
***************YAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHS*********FEHILN********
Disordered Region (DISOPRED)
*****************FQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHS***********************
Disordered Region (DISEMBL)
*************PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY
Disordered Region (DISPRO)
***********RKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMH************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKIKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q9FYA2	145	Probable WRKY transcripti	yes	no	0.867	0.634	0.880	3e-44
Q9S763	147	Probable WRKY transcripti	no	no	0.867	0.625	0.739	3e-37
Q9FFS3	179	Probable WRKY transcripti	no	no	0.933	0.553	0.64	1e-32
Q8VWQ4	195	Probable WRKY transcripti	no	no	0.933	0.507	0.616	7e-32
Q8GY11	109	Probable WRKY transcripti	no	no	0.933	0.908	0.575	2e-31
Q8VWJ2	318	Probable WRKY transcripti	no	no	0.811	0.270	0.678	1e-28
Q9C983	287	Probable WRKY transcripti	no	no	0.754	0.278	0.65	3e-28
Q93WY4	218	Probable WRKY transcripti	no	no	0.773	0.376	0.638	1e-26
Q93WV4	282	Probable WRKY transcripti	no	no	0.811	0.304	0.617	2e-26
Q9FGZ4	399	Probable WRKY transcripti	no	no	0.707	0.187	0.653	4e-26

>sp|Q9FYA2|WRK75_ARATH Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1

 Score =  176 bits (447), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 81/92 (88%), Positives = 88/92 (95%)

Query: 15  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVV 74
           RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCT+ GCNVKKQVQRLT D+ VV
Sbjct: 54  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVV 113

Query: 75  VTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
           VTTYEG+HSHPIE+ST+NFEHIL QMQIY+S+
Sbjct: 114 VTTYEGVHSHPIEKSTENFEHILTQMQIYSSF 145

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9S763|WRK45_ARATH Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1

 Score =  153 bits (386), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 79/92 (85%)

Query: 15  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVV 74
           RYAFQTRSQVDILDDGYRWRKYGQKAVKNN FPRSYY+CT +GC VKKQVQR   DEGVV
Sbjct: 52  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVV 111

Query: 75  VTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
           VTTY+G+H+H +++ +DNF HIL QM I+  +
Sbjct: 112 VTTYQGVHTHAVDKPSDNFHHILTQMHIFPPF 143

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS3|WRK24_ARATH Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1

 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 77/100 (77%), Gaps = 1/100 (1%)

Query: 8   EKKVRK-PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQR 66
           EK+ RK PR AF TRS  D+LDDGYRWRKYGQK+VK+N  PRSYYRCT+  CNVKKQVQR
Sbjct: 77  EKRSRKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCNVKKQVQR 136

Query: 67  LTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
           L KD  VVVTTYEG+H+HP E+  +    +L Q+Q  +S+
Sbjct: 137 LAKDPNVVVTTYEGVHNHPCEKLMETLNPLLRQLQFLSSF 176

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWQ4|WRK56_ARATH Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1

 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 74/99 (74%)

Query: 6   KGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQ 65
           KG++ +   R AF TRS  D+LDDGYRWRKYGQK+VKNN  PRSYYRCT+  CNVKKQVQ
Sbjct: 92  KGKRTLAMQRIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQ 151

Query: 66  RLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYT 104
           RL KD  VVVTTYEG+H+HP E+  +    +L Q+Q  +
Sbjct: 152 RLAKDPNVVVTTYEGVHNHPCEKLMETLSPLLRQLQFLS 190

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY11|WRK43_ARATH Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 77/99 (77%)

Query: 8   EKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRL 67
           +KK++ PR++F+T+S  DILDDGYRWRKYGQK+VKN+ +PRSYYRCT   CNVKKQVQRL
Sbjct: 10  DKKMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQRL 69

Query: 68  TKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
           +K+  +V TTYEG+H+HP E        +L+Q+Q  + +
Sbjct: 70  SKETSIVETTYEGIHNHPCEELMQTLTPLLHQLQFLSKF 108

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/87 (67%), Positives = 72/87 (82%), Gaps = 1/87 (1%)

Query: 1   MGKIKKGE-KKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCN 59
           +GK KK E KK R+PR +F T+S+VD L+DGYRWRKYGQKAVKN+ +PRSYYRCT Q CN
Sbjct: 144 VGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCN 203

Query: 60  VKKQVQRLTKDEGVVVTTYEGMHSHPI 86
           VKK+V+R  +D  VV+TTYEG H+HPI
Sbjct: 204 VKKRVERSFQDPTVVITTYEGQHNHPI 230

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C983|WRK57_ARATH Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 66/80 (82%)

Query: 5   KKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQV 64
           KK +K++R+PR+AF T+S VD L+DGYRWRKYGQKAVKN+ FPRSYYRCT+  C VKK+V
Sbjct: 124 KKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRV 183

Query: 65  QRLTKDEGVVVTTYEGMHSH 84
           +R + D  +V+TTYEG H H
Sbjct: 184 ERSSDDPSIVITTYEGQHCH 203

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 69/83 (83%), Gaps = 1/83 (1%)

Query: 9   KKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLT 68
           +K+R+PR+ FQT+S VD+LDDGY+WRKYGQK VKN+  PRSYYRCTH  C VKK+V+RL+
Sbjct: 126 RKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLS 185

Query: 69  KDEGVVVTTYEGMHSH-PIERST 90
           +D  +V+TTYEG H+H P + ST
Sbjct: 186 EDCRMVITTYEGRHNHIPSDDST 208

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV4|WRK71_ARATH Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 69/89 (77%), Gaps = 3/89 (3%)

Query: 12  RKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDE 71
           R+ R AF T+S++D L+DGYRWRKYGQKAVKN+ +PRSYYRCT Q CNVKK+V+R  +D 
Sbjct: 120 REVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDP 179

Query: 72  GVVVTTYEGMHSHPIE---RSTDNFEHIL 97
            +V+TTYEG H+HPI    R T   EH+L
Sbjct: 180 SIVITTYEGKHNHPIPSTLRGTVAAEHLL 208

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGZ4|WRK48_ARATH Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 61/75 (81%)

Query: 12  RKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDE 71
           R+ R+AF T+S +D LDDGYRWRKYGQKAVKN+ +PRSYYRCT  GC VKK+V+R + D 
Sbjct: 205 REARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDP 264

Query: 72  GVVVTTYEGMHSHPI 86
            +V+TTYEG H+HP 
Sbjct: 265 SIVMTTYEGQHTHPF 279

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
198449163	190	WRKY DNA binding protein [Fragaria x ana	0.971	0.542	0.932	3e-53
302399123	139	WRKY domain class transcription factor [	1.0	0.762	0.877	2e-50
224129302	102	predicted protein [Populus trichocarpa]	0.962	1.0	0.931	2e-50
346456306	195	WRKY transcription factor B [Dimocarpus	0.877	0.476	0.978	2e-49
224060279	101	predicted protein [Populus trichocarpa]	0.952	1.0	0.900	3e-49
383288273	166	WRKY transcription factor [Gossypium bar	1.0	0.638	0.849	3e-49
224057782	160	predicted protein [Populus trichocarpa]	0.943	0.625	0.9	5e-49
355320024	145	WRKY transcription factor [Humulus lupul	0.915	0.668	0.927	5e-49
413920815	229	putative WRKY DNA-binding domain superfa	0.943	0.436	0.88	8e-49
255547662	203	WRKY transcription factor, putative [Ric	0.877	0.458	0.946	8e-49

>gi|198449163|gb|ACH88751.1| WRKY DNA binding protein [Fragaria x ananassa]

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/103 (93%), Positives = 102/103 (99%)

Query: 4   IKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQ 63
           +KKG+KK+RKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQ
Sbjct: 88  MKKGDKKIRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQ 147

Query: 64  VQRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
           VQRLT+DEGVVVTTYEGMHSHPIE+STDNFEHIL QMQIYTS+
Sbjct: 148 VQRLTRDEGVVVTTYEGMHSHPIEKSTDNFEHILTQMQIYTSF 190

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399123|gb|ADL36856.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/106 (87%), Positives = 100/106 (94%)

Query: 1   MGKIKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNV 60
           +G  K  +KK+RKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTH GCNV
Sbjct: 34  LGMKKGDQKKIRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHHGCNV 93

Query: 61  KKQVQRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
           KKQVQRLTKDEGVVVTTYEGMHSHPIE+STDNFEHIL+QM+IYT +
Sbjct: 94  KKQVQRLTKDEGVVVTTYEGMHSHPIEKSTDNFEHILSQMKIYTPF 139

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129302|ref|XP_002328940.1| predicted protein [Populus trichocarpa] gi|222839370|gb|EEE77707.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/102 (93%), Positives = 99/102 (97%)

Query: 5   KKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQV 64
           KKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCT+QGC VKKQV
Sbjct: 1   KKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCTVKKQV 60

Query: 65  QRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
           QRLTKDEGVVVTTYEGMHSHPIE+S DNFEHIL+QMQIYT +
Sbjct: 61  QRLTKDEGVVVTTYEGMHSHPIEKSNDNFEHILSQMQIYTPF 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346456306|gb|AEO31515.1| WRKY transcription factor B [Dimocarpus longan]

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/93 (97%), Positives = 93/93 (100%)

Query: 14  PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGV 73
           PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGV
Sbjct: 103 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGV 162

Query: 74  VVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
           VVTTYEGMHSHPIE+STDNFEHIL+QMQIYTSY
Sbjct: 163 VVTTYEGMHSHPIEKSTDNFEHILSQMQIYTSY 195

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060279|ref|XP_002300120.1| predicted protein [Populus trichocarpa] gi|222847378|gb|EEE84925.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/101 (90%), Positives = 99/101 (98%)

Query: 5   KKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQV 64
           KKGEKK+RKP+YAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCT+QGCNVKKQV
Sbjct: 1   KKGEKKIRKPKYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQV 60

Query: 65  QRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTS 105
           QRLTKDEGVVVTTYEGMH+HPIE+  DNFEHIL+QMQIY++
Sbjct: 61  QRLTKDEGVVVTTYEGMHTHPIEKPNDNFEHILSQMQIYST 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383288273|gb|AFH02532.1| WRKY transcription factor [Gossypium barbadense]

 Score =  198 bits (504), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 90/106 (84%), Positives = 98/106 (92%)

Query: 1   MGKIKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNV 60
           M   +K EKK+RKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTH+GC V
Sbjct: 61  MKSSQKMEKKIRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHEGCKV 120

Query: 61  KKQVQRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
           KKQVQRLTKDE VVVTTYEGMH+HPI++ TDNFEHIL+QMQIYT +
Sbjct: 121 KKQVQRLTKDESVVVTTYEGMHTHPIQKPTDNFEHILSQMQIYTPF 166

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057782|ref|XP_002299321.1| predicted protein [Populus trichocarpa] gi|222846579|gb|EEE84126.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (502), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 90/100 (90%), Positives = 96/100 (96%)

Query: 5   KKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQV 64
           K+GEKK+RKP+YAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQV
Sbjct: 61  KRGEKKIRKPKYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQV 120

Query: 65  QRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYT 104
           QRLTKDEG+VVTTYEG HSH IE+STDNFE IL QMQIY+
Sbjct: 121 QRLTKDEGIVVTTYEGTHSHQIEKSTDNFEQILRQMQIYS 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355320024|emb|CBY88801.1| WRKY transcription factor [Humulus lupulus]

 Score =  197 bits (502), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 90/97 (92%), Positives = 95/97 (97%)

Query: 9   KKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLT 68
           KK RKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLT
Sbjct: 47  KKARKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLT 106

Query: 69  KDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTS 105
           KDEG+VVTTYEGMHSH I++STDNFEHIL+QMQIYT+
Sbjct: 107 KDEGIVVTTYEGMHSHTIDKSTDNFEHILSQMQIYTT 143

Source: Humulus lupulus

Species: Humulus lupulus

Genus: Humulus

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413920815|gb|AFW60747.1| putative WRKY DNA-binding domain superfamily protein [Zea mays]

 Score =  197 bits (500), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 88/100 (88%), Positives = 96/100 (96%)

Query: 5   KKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQV 64
           +KGEKK R+PR+AFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQV
Sbjct: 115 RKGEKKERRPRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQV 174

Query: 65  QRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYT 104
           QRL++DEGVVVTTYEG H+HPIE+S DNFEHIL QMQIY+
Sbjct: 175 QRLSRDEGVVVTTYEGTHTHPIEKSNDNFEHILTQMQIYS 214

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547662|ref|XP_002514888.1| WRKY transcription factor, putative [Ricinus communis] gi|223545939|gb|EEF47442.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  197 bits (500), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 88/93 (94%), Positives = 93/93 (100%)

Query: 14  PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGV 73
           PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLT+DEG+
Sbjct: 111 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGI 170

Query: 74  VVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
           VVTTYEGMHSHPIE+STDNFEHIL+QMQIYTS+
Sbjct: 171 VVTTYEGMHSHPIEKSTDNFEHILSQMQIYTSF 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
TAIR|locus:2179862	145	WRKY75 "WRKY DNA-binding prote	0.867	0.634	0.880	3.2e-42
TAIR|locus:2078703	147	WRKY45 "WRKY DNA-binding prote	0.867	0.625	0.739	5.7e-36
TAIR|locus:2160512	179	WRKY24 "WRKY DNA-binding prote	0.877	0.519	0.645	1.1e-30
TAIR|locus:2024583	195	WRKY56 "WRKY DNA-binding prote	0.820	0.446	0.678	1e-29
TAIR|locus:2062949	109	WRKY43 "WRKY DNA-binding prote	0.877	0.853	0.591	4.4e-29
TAIR|locus:2019382	282	WRKY71 "WRKY DNA-binding prote	0.783	0.294	0.627	4e-26
TAIR|locus:505006317	218	WRKY12 "WRKY DNA-binding prote	0.726	0.353	0.653	6.6e-26
TAIR|locus:2141872	318	WRKY28 "WRKY DNA-binding prote	0.688	0.229	0.698	8.4e-26
TAIR|locus:2170403	326	WRKY8 "WRKY DNA-binding protei	0.688	0.223	0.671	7.6e-25
TAIR|locus:2157829	399	WRKY48 "WRKY DNA-binding prote	0.669	0.177	0.676	9.7e-25

TAIR|locus:2179862 WRKY75 "WRKY DNA-binding protein 75" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 81/92 (88%), Positives = 88/92 (95%)

Query:    15 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVV 74
             RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCT+ GCNVKKQVQRLT D+ VV
Sbjct:    54 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVV 113

Query:    75 VTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
             VTTYEG+HSHPIE+ST+NFEHIL QMQIY+S+
Sbjct:   114 VTTYEGVHSHPIEKSTENFEHILTQMQIYSSF 145

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0032107 "regulation of response to nutrient levels" evidence=IMP

GO:0043620 "regulation of DNA-dependent transcription in response to stress" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2078703 WRKY45 "WRKY DNA-binding protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 68/92 (73%), Positives = 79/92 (85%)

Query:    15 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVV 74
             RYAFQTRSQVDILDDGYRWRKYGQKAVKNN FPRSYY+CT +GC VKKQVQR   DEGVV
Sbjct:    52 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVV 111

Query:    75 VTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
             VTTY+G+H+H +++ +DNF HIL QM I+  +
Sbjct:   112 VTTYQGVHTHAVDKPSDNFHHILTQMHIFPPF 143

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2160512 WRKY24 "WRKY DNA-binding protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 60/93 (64%), Positives = 72/93 (77%)

Query:    14 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGV 73
             PR AF TRS  D+LDDGYRWRKYGQK+VK+N  PRSYYRCT+  CNVKKQVQRL KD  V
Sbjct:    84 PRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCNVKKQVQRLAKDPNV 143

Query:    74 VVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
             VVTTYEG+H+HP E+  +    +L Q+Q  +S+
Sbjct:   144 VVTTYEGVHNHPCEKLMETLNPLLRQLQFLSSF 176

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2024583 WRKY56 "WRKY DNA-binding protein 56" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 59/87 (67%), Positives = 68/87 (78%)

Query:    15 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVV 74
             R AF TRS  D+LDDGYRWRKYGQK+VKNN  PRSYYRCT+  CNVKKQVQRL KD  VV
Sbjct:   101 RIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVV 160

Query:    75 VTTYEGMHSHPIERSTDNFEHILNQMQ 101
             VTTYEG+H+HP E+  +    +L Q+Q
Sbjct:   161 VTTYEGVHNHPCEKLMETLSPLLRQLQ 187

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062949 WRKY43 "WRKY DNA-binding protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 55/93 (59%), Positives = 72/93 (77%)

Query:    14 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGV 73
             PR++F+T+S  DILDDGYRWRKYGQK+VKN+ +PRSYYRCT   CNVKKQVQRL+K+  +
Sbjct:    16 PRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQRLSKETSI 75

Query:    74 VVTTYEGMHSHPIERSTDNFEHILNQMQIYTSY 106
             V TTYEG+H+HP E        +L+Q+Q  + +
Sbjct:    76 VETTYEGIHNHPCEELMQTLTPLLHQLQFLSKF 108

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2019382 WRKY71 "WRKY DNA-binding protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query:    15 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVV 74
             R AF T+S++D L+DGYRWRKYGQKAVKN+ +PRSYYRCT Q CNVKK+V+R  +D  +V
Sbjct:   123 RVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIV 182

Query:    75 VTTYEGMHSHPIE---RSTDNFEHIL 97
             +TTYEG H+HPI    R T   EH+L
Sbjct:   183 ITTYEGKHNHPIPSTLRGTVAAEHLL 208

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:505006317 WRKY12 "WRKY DNA-binding protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 51/78 (65%), Positives = 64/78 (82%)

Query:    14 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGV 73
             PR+ FQT+S VD+LDDGY+WRKYGQK VKN+  PRSYYRCTH  C VKK+V+RL++D  +
Sbjct:   131 PRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRM 190

Query:    74 VVTTYEGMHSH-PIERST 90
             V+TTYEG H+H P + ST
Sbjct:   191 VITTYEGRHNHIPSDDST 208

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2141872 WRKY28 "WRKY DNA-binding protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 51/73 (69%), Positives = 62/73 (84%)

Query:    14 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGV 73
             PR +F T+S+VD L+DGYRWRKYGQKAVKN+ +PRSYYRCT Q CNVKK+V+R  +D  V
Sbjct:   158 PRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTV 217

Query:    74 VVTTYEGMHSHPI 86
             V+TTYEG H+HPI
Sbjct:   218 VITTYEGQHNHPI 230

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2170403 WRKY8 "WRKY DNA-binding protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 49/73 (67%), Positives = 61/73 (83%)

Query:    14 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGV 73
             PR +F T+++VD L+DGYRWRKYGQKAVKN+ +PRSYYRCT Q CNVKK+V+R  +D  V
Sbjct:   169 PRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTV 228

Query:    74 VVTTYEGMHSHPI 86
             V+TTYE  H+HPI
Sbjct:   229 VITTYESQHNHPI 241

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEP

TAIR|locus:2157829 WRKY48 "WRKY DNA-binding protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 48/71 (67%), Positives = 59/71 (83%)

Query:    15 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVV 74
             R+AF T+S +D LDDGYRWRKYGQKAVKN+ +PRSYYRCT  GC VKK+V+R + D  +V
Sbjct:   208 RFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIV 267

Query:    75 VTTYEGMHSHP 85
             +TTYEG H+HP
Sbjct:   268 MTTYEGQHTHP 278

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0003677 "DNA binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FYA2	WRK75_ARATH	No assigned EC number	0.8804	0.8679	0.6344	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	106
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	9e-33
smart00774	59	smart00774, WRKY, DNA binding domain	5e-32

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  108 bits (272), Expect = 9e-33
 Identities = 40/59 (67%), Positives = 45/59 (76%)

Query: 27 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHP 85
          LDDGY WRKYGQK VK + FPRSYYRCT  GC VKKQV+R + D  +V  TYEG H+HP
Sbjct: 1  LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  106 bits (267), Expect = 5e-32
 Identities = 39/59 (66%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 27 LDDGYRWRKYGQKAVKNNKFPRSYYRCTH-QGCNVKKQVQRLTKDEGVVVTTYEGMHSH 84
          LDDGY+WRKYGQK +K + +PRSYYRCT+ QGC  KKQVQR   D  VV  TYEG H+H
Sbjct: 1  LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	100.0
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	100.0
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	95.04
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	92.78

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=100.00  E-value=2.8e-36  Score=192.45  Aligned_cols=59  Identities=68%  Similarity=1.301  Sum_probs=52.6

Q ss_pred             cCCCcceeecCcccccCCCCCCccccccccccccccceeeecCCCCEEEEeEeccCCCC
Q 043122           27 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHP   85 (106)
Q Consensus        27 ~~DGy~WRKYGQK~ikg~~~pRsYyrCt~~~C~akK~Vqr~~~D~~~~~~tY~G~H~h~   85 (106)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            58999999999999999999999999999999999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=100.00  E-value=7.9e-35  Score=185.79  Aligned_cols=58  Identities=69%  Similarity=1.218  Sum_probs=56.6

Q ss_pred             cCCCcceeecCcccccCCCCCCccccccc-cccccccceeeecCCCCEEEEeEeccCCC
Q 043122           27 LDDGYRWRKYGQKAVKNNKFPRSYYRCTH-QGCNVKKQVQRLTKDEGVVVTTYEGMHSH   84 (106)
Q Consensus        27 ~~DGy~WRKYGQK~ikg~~~pRsYyrCt~-~~C~akK~Vqr~~~D~~~~~~tY~G~H~h   84 (106)
                      ++|||.|||||||.|+|+++||+||||++ ++|+|+|+||++++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            48999999999999999999999999999 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.04  E-value=0.021  Score=34.05  Aligned_cols=50  Identities=30%  Similarity=0.649  Sum_probs=24.9

Q ss_pred             cccCCCcceeecCcccccCCCCCCcccccccc---ccccccceeeecCCCCEEEEeEeccCCC
Q 043122           25 DILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQ---GCNVKKQVQRLTKDEGVVVTTYEGMHSH   84 (106)
Q Consensus        25 ~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~~---~C~akK~Vqr~~~D~~~~~~tY~G~H~h   84 (106)
                      .++-|||.-.+....      ....|++|+..   +|+|+=.+.  ++++ .+. ...++|||
T Consensus        10 ~L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~~-~~~~~HnH   62 (62)
T PF04500_consen   10 KLVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RVV-RTNGEHNH   62 (62)
T ss_dssp             EEEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EEE-E-S---SS
T ss_pred             EEEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EEE-ECCCccCC
Confidence            367789886664444      34589999983   899977765  2333 333 33489998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=92.78  E-value=0.11  Score=33.58  Aligned_cols=32  Identities=31%  Similarity=0.517  Sum_probs=26.8

Q ss_pred             cccccccceeeecCCCCEEEEeEeccCCCCCCC
Q 043122           56 QGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIER   88 (106)
Q Consensus        56 ~~C~akK~Vqr~~~D~~~~~~tY~G~H~h~~~~   88 (106)
                      .+|+|+=.|-+.. |+...++.+..+|||+..+
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~P   91 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLCP   91 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCCC
Confidence            6999998887755 7888889999999999743

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		2e-22
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		1e-19

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 52/70 (74%)
Query: 17 AFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVT 76
            QT S+VD+LDDGYRWRKYGQK VK N +PRSYY+CT  GC V+K V+R   D   VVT
Sbjct: 7  GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66
Query: 77 TYEGMHSHPI 86
          TYEG H+H +
Sbjct: 67 TYEGKHNHDL 76

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 15 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVV 74
          R    T++  DI++DGYRWRKYGQK+VK + +PRSYYRC+  GC VKK V+R + D  ++
Sbjct: 2  RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 75 VTTYEGMHSH 84
          +TTYEG H H
Sbjct: 62 ITTYEGKHDH 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	2e-43
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	1e-40

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  135 bits (341), Expect = 2e-43
 Identities = 44/75 (58%), Positives = 52/75 (69%)

Query: 12 RKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDE 71
                 QT S+VD+LDDGYRWRKYGQK VK N +PRSYY+CT  GC V+K V+R   D 
Sbjct: 2  SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 72 GVVVTTYEGMHSHPI 86
            VVTTYEG H+H +
Sbjct: 62 KAVVTTYEGKHNHDL 76

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  127 bits (322), Expect = 1e-40
 Identities = 39/72 (54%), Positives = 53/72 (73%)

Query: 15 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVV 74
          R    T++  DI++DGYRWRKYGQK+VK + +PRSYYRC+  GC VKK V+R + D  ++
Sbjct: 2  RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 75 VTTYEGMHSHPI 86
          +TTYEG H H +
Sbjct: 62 ITTYEGKHDHDM 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	88.72

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=3.3e-40  Score=218.78  Aligned_cols=75  Identities=52%  Similarity=1.031  Sum_probs=72.7

Q ss_pred             ceeEEEeeccccccCCCcceeecCcccccCCCCCCccccccccccccccceeeecCCCCEEEEeEeccCCCCCCC
Q 043122           14 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIER   88 (106)
Q Consensus        14 ~r~~~~t~s~~~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~~~C~akK~Vqr~~~D~~~~~~tY~G~H~h~~~~   88 (106)
                      .|++++|.+++++++|||.|||||||.|+|+++||+||||++++|+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            378999999999999999999999999999999999999999999999999999999999999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=5.4e-40  Score=218.71  Aligned_cols=75  Identities=59%  Similarity=1.053  Sum_probs=69.4

Q ss_pred             ceeEEEeeccccccCCCcceeecCcccccCCCCCCccccccccccccccceeeecCCCCEEEEeEeccCCCCCCC
Q 043122           14 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIER   88 (106)
Q Consensus        14 ~r~~~~t~s~~~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~~~C~akK~Vqr~~~D~~~~~~tY~G~H~h~~~~   88 (106)
                      .+++++|.+++++++|||.|||||||.|+|+++||+||||++++|+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999873

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=88.72  E-value=0.49  Score=30.11  Aligned_cols=60  Identities=15%  Similarity=0.320  Sum_probs=37.1

Q ss_pred             eeEEEeeccccccCCCcceeecCcccccCCCCCCccccccc---cccccccceeeecCCCCEEEEeEeccCCCCCC
Q 043122           15 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTH---QGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIE   87 (106)
Q Consensus        15 r~~~~t~s~~~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~---~~C~akK~Vqr~~~D~~~~~~tY~G~H~h~~~   87 (106)
                      .++.-.+....++-|||.-.+--+      ...+.|.+|+.   .+|.|+=...  . +.  +  .-.+.||||+.
T Consensus        12 ~fv~s~rG~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~--~-~~--~--~~~~~HnH~p~   74 (87)
T 2rpr_A           12 EFLRTSLGGRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQ--G-HR--I--MVMRSHCHQPD   74 (87)
T ss_dssp             EEEEETTTEEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEE--T-TE--E--EECSCCSSCCC
T ss_pred             EEEEcCCCCcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEc--C-CC--E--ECCCCcCCCCc
Confidence            444444455667899998765221      23468999997   5899974433  2 22  2  34688999753

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	3e-32

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  105 bits (264), Expect = 3e-32
 Identities = 44/68 (64%), Positives = 52/68 (76%)

Query: 19 QTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTY 78
          QT S+VD+LDDGYRWRKYGQK VK N +PRSYY+CT  GC V+K V+R   D   VVTTY
Sbjct: 2  QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTY 61

Query: 79 EGMHSHPI 86
          EG H+H +
Sbjct: 62 EGKHNHDL 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.3e-40  Score=214.81  Aligned_cols=71  Identities=62%  Similarity=1.127  Sum_probs=67.8

Q ss_pred             EEeeccccccCCCcceeecCcccccCCCCCCccccccccccccccceeeecCCCCEEEEeEeccCCCCCCC
Q 043122           18 FQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIER   88 (106)
Q Consensus        18 ~~t~s~~~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~~~C~akK~Vqr~~~D~~~~~~tY~G~H~h~~~~   88 (106)
                      ++|.+++++++|||.|||||||.|+|+++||+||||++++|+|+|+|||+++|+++++|||+|+|||+.|.
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            35778999999999999999999999999999999999999999999999999999999999999999874