Citrus Sinensis ID: 043147

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
MSTTTKIVVLLLAGNPSTKSMVHFVFNDLGNPDRGSEFVRPTLGGEQRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAAHVCSNDARVRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW
ccccHHHHHHHHcccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHcccccccccHHcccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccccccccccccccccccccccccccccEEEEccccccccEEEEcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccHHHccccccHHHHccHHHHHHHcccccccEEEccccccccccccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccc
cccccEEEEEEEcccccccEEcEEcEccccccccccccccccEcccccccccEEcccccEcccccccEccccccccEEccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcHHHHHHHHHHcccccccEEcccccccccccccccccccccccccccccccccccHHHHHHcccEEEEEEccccHHHHHHHcccccEEccEEEEEEEEcccccEEEEEEEEEEEccccccccEEEEEcccHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHcccHccHHHHcHHHHHHHcccEEEcccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccHHHHHHHHHHHHHHHcHHHHHHHccHHHHHccccccccccccc
MSTTTKIVVLLLAGNPSTKSMVHFVFNdlgnpdrgsefvrptlggeqrpyprrcrtgrlptdtdmhaesriekplpmyvprdeqfeeskhdAFSAGRLKAALRNLIPLLKASISAHNRDFRDKFAWLQDDEFACQAlagvnpvtidglqafppvsnldpaiygpqesalkeehiigqldgmSVQQVLKENKLYVLDCHHIYLPFLdkinaldgrkaYATRTIFFlnslgplkpiaielslppsgpdqsaahvcsndarvrthacmEPFILTAHRQLSAmhpiyklldphmrYTLEINALARKNlinadgvidasmfkswrfdkeglpadlirrgiavpdptqpdglkLLIEDYPYAADGLLIWSAIEDWVRTYLKSWHnesinvghadlrqeswwptltngddLVFILNTIIWLASAQHAALnfgqcpyggyvpnrppfdekw
MSTTTKIVVLLlagnpstkSMVHFVFNDLGNPDRGSEfvrptlggeqrpyprrcrtgrlptdtdmhaesriekplpmyVPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAAHVCSNDARVRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW
MSTTTKIVVLLLAGNPSTKSMVHFVFNDLGNPDRGSEFVRPTLGGEQRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAAHVCSNDARVRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW
*****KIVVLLLAGNPSTKSMVHFVFNDL******************************************************************GRLKAALRNLIPLLKASISAHNRDFRDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELS***********HVCSNDARVRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYV**********
****TKI*VLLLAGNPSTKSMVHFVFNDLGNPDRGSEFVRPTL************T****TDTDMHAESRIEKPLPMYVPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAAHVCSNDARVRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFD*K*
MSTTTKIVVLLLAGNPSTKSMVHFVFNDLGNPDRGSEFVRPTLGGEQRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPP***********SNDARVRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW
**TTTKIVVLLLAGNPSTKSMVHFVFNDLGNPDRGSEFVRPTLGGEQRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAAHVCSNDARVRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPP*****
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MSTTTKIVVLLLAGNPSTKSMVHFVFNDLGNPDRGSEFVRPTLGGEQRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDEQFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFRDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAAHVCSNDARVRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query443 2.2.26 [Sep-21-2011]
O24371 914 Linoleate 13S-lipoxygenas N/A no 0.936 0.454 0.594 1e-172
Q9LNR3 919 Lipoxygenase 3, chloropla yes no 0.936 0.451 0.600 1e-171
Q8H016 918 Probable lipoxygenase 6 O yes no 0.936 0.452 0.556 1e-157
Q9FNX8 926 Lipoxygenase 4, chloropla no no 0.936 0.448 0.557 1e-156
Q7XV13 899 Putative lipoxygenase 5 O no no 0.936 0.461 0.535 1e-150
Q9CAG3 917 Lipoxygenase 6, choloropl no no 0.930 0.449 0.464 1e-118
Q53RB0 877 Probable linoleate 9S-lip no no 0.941 0.475 0.409 1e-106
O24370 899 Linoleate 13S-lipoxygenas N/A no 0.925 0.456 0.414 1e-105
P09439 865 Seed linoleate 9S-lipoxyg no no 0.916 0.469 0.416 1e-104
P38418 896 Lipoxygenase 2, chloropla no no 0.927 0.458 0.392 1e-104
>sp|O24371|LOX31_SOLTU Linoleate 13S-lipoxygenase 3-1, chloroplastic OS=Solanum tuberosum GN=LOX3.1 PE=1 SV=1 Back     alignment and function desciption
 Score =  605 bits (1560), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 312/525 (59%), Positives = 359/525 (68%), Gaps = 110/525 (20%)

Query: 25  VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
           ++NDLGNPD+G +F RP LGG+   PYPRRCR+GR+PTDTD+ AESR+EKP P YVPRDE
Sbjct: 261 IYNDLGNPDKGIDFARPKLGGDDNVPYPRRCRSGRVPTDTDISAESRVEKPNPTYVPRDE 320

Query: 84  QFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFR---------------------- 121
           QFEESK + FS  RLKA L NLIP L ASIS++N DF+                      
Sbjct: 321 QFEESKMNTFSTSRLKAVLHNLIPSLMASISSNNHDFKGFSDIDNLYSKGLLLKLGLQDE 380

Query: 122 ------------------------------DKFAWLQDDEFACQALAGVNPVTIDGLQAF 151
                                         DKFAWL+DDEFA QA+AGVNPV+I+ LQ F
Sbjct: 381 VLKKLPLPKVVSSIKEGDLLKYDTPKILSKDKFAWLRDDEFARQAIAGVNPVSIEKLQFF 440

Query: 152 PPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINAL 211
           PPVS LDP IYGPQESALKEEHI+G L+GM+VQ+ L  NKL+++D H +YLPFLD+INAL
Sbjct: 441 PPVSKLDPEIYGPQESALKEEHILGHLNGMTVQEALDANKLFIVDHHDVYLPFLDRINAL 500

Query: 212 DGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQ--------------------SAAH 251
           DGRKAYATRTIFFL+ +G LKPIAIELSLP +GP                      + AH
Sbjct: 501 DGRKAYATRTIFFLSDVGTLKPIAIELSLPQTGPSSRSKRVVTPPVCATGNWTWQIAKAH 560

Query: 252 VCSNDARV--------RTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKN 303
           VC+NDA V        RTHA +EPFIL AHRQLSAMHPIYKLLDPHMRYTLEIN LAR++
Sbjct: 561 VCANDAGVHQLVNHWLRTHASLEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINGLARQS 620

Query: 304 LINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLI 350
           LINADGVI+             A+ +K+WRFD EGLPADLIRRG+AVPD TQP GLKLLI
Sbjct: 621 LINADGVIEACFTPGRYCMEISAAAYKNWRFDLEGLPADLIRRGMAVPDSTQPHGLKLLI 680

Query: 351 EDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQESW 394
           EDYPYAADGL+IW AIE WVR Y                L++W+ E+INVGH DLR E W
Sbjct: 681 EDYPYAADGLMIWGAIESWVRDYVNHYYPSSAQVCSDRELQAWYAETINVGHVDLRNEEW 740

Query: 395 WPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPF 439
           WPTL   +DL+ IL T+IWLASAQHAALNFGQ PYGGYVPNRPP 
Sbjct: 741 WPTLATPEDLISILTTLIWLASAQHAALNFGQYPYGGYVPNRPPL 785
Plant lipoxygenases may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Required for the regulation of wound-induced gene expression, but is not involved in the bulk production of jasmonate upon wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure. Linolenic acid is the preferred substrate, before linoleic and arachidonic acids.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 1EC: 2
>sp|Q9LNR3|LOX3_ARATH Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1 Back     alignment and function description
>sp|Q8H016|LOX6_ORYSJ Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2 Back     alignment and function description
>sp|Q9FNX8|LOX4_ARATH Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1 Back     alignment and function description
>sp|Q7XV13|LOX5_ORYSJ Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2 Back     alignment and function description
>sp|Q9CAG3|LOX6_ARATH Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1 Back     alignment and function description
>sp|Q53RB0|LOX4_ORYSJ Probable linoleate 9S-lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1 Back     alignment and function description
>sp|O24370|LOX21_SOLTU Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1 Back     alignment and function description
>sp|P09439|LOX2_SOYBN Seed linoleate 9S-lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1 Back     alignment and function description
>sp|P38418|LOX2_ARATH Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
187960377 913 lipoxygenase 2 [Olea europaea] 0.936 0.454 0.609 1e-174
14589309 922 lipoxygenase [Sesbania rostrata] 0.936 0.450 0.600 1e-173
356506132 901 PREDICTED: linoleate 13S-lipoxygenase 3- 0.936 0.460 0.611 1e-173
407930085 909 lipoxygenase 2 [Capsicum annuum] 0.936 0.456 0.605 1e-173
32454714 913 lipoxygenase [Nicotiana attenuata] 0.936 0.454 0.604 1e-173
356519798 927 PREDICTED: linoleate 13S-lipoxygenase 3- 0.936 0.447 0.597 1e-172
28911945 817 lipoxygenase [Nicotiana attenuata] 0.936 0.507 0.604 1e-172
268636249 916 lipoxygenase [Vitis vinifera] 0.936 0.453 0.593 1e-170
75277588 914 RecName: Full=Linoleate 13S-lipoxygenase 0.936 0.454 0.594 1e-170
147826997 1110 hypothetical protein VITISV_021889 [Viti 0.936 0.373 0.593 1e-170
>gi|187960377|gb|ACD43484.1| lipoxygenase 2 [Olea europaea] Back     alignment and taxonomy information
 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 320/525 (60%), Positives = 362/525 (68%), Gaps = 110/525 (20%)

Query: 25  VFNDLGNPDRGSEFVRPTLGGEQRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDEQ 84
           ++NDLGNPD+G +FVRPTLGGE  PYPRRCRTGR PTDTD +AESR+EKPLPMYVPRDEQ
Sbjct: 260 IYNDLGNPDKGIDFVRPTLGGENIPYPRRCRTGRPPTDTDFNAESRVEKPLPMYVPRDEQ 319

Query: 85  FEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDFR----------------------- 121
           FEESK +AFS GRLKA L NLIP L ASISA N DF+                       
Sbjct: 320 FEESKMNAFSTGRLKAVLHNLIPSLMASISASNHDFKGFSDIDSLYSEGLLLKLGLQDEL 379

Query: 122 -----------------------------DKFAWLQDDEFACQALAGVNPVTIDGLQAFP 152
                                        DKFAWL+DDEF  QA+AGVNPV I+ LQ+FP
Sbjct: 380 SKKIQLPKAVSKIQEGGLLKYDIPKIISKDKFAWLRDDEFGRQAIAGVNPVNIERLQSFP 439

Query: 153 PVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINALD 212
           PV  LDP IYGPQESALKEEHI+G L+GM+VQ+ L+ NKL+++D H IYLPFLD INALD
Sbjct: 440 PVCKLDPEIYGPQESALKEEHIVGHLNGMTVQEALEANKLFIIDYHDIYLPFLDGINALD 499

Query: 213 GRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQ--------------------SAAHV 252
           GRK YATRTIFFL  LG LKPIAIELSLPP+ P                      + AHV
Sbjct: 500 GRKEYATRTIFFLTDLGTLKPIAIELSLPPTAPSSRSKQVVTPPVDATTDWMWKLAKAHV 559

Query: 253 CSNDARV--------RTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNL 304
           C+NDA V        RTHA +EPFIL AHRQLSAMHPI+KLLDPHMRYTLEINALAR++L
Sbjct: 560 CANDAGVHQLVNHWLRTHATIEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSL 619

Query: 305 INADGVID-------------ASMFKS-WRFDKEGLPADLIRRGIAVPDPTQPDGLKLLI 350
           I+ADGVI+             A+ +++ WRFD EGLPADLIRRG+AVPDPTQP GLKLLI
Sbjct: 620 ISADGVIESCFTPGRYCMEISAAAYRNFWRFDLEGLPADLIRRGMAVPDPTQPHGLKLLI 679

Query: 351 EDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQESW 394
           EDYPYA DGL+IW+AIE+WVR+Y                L++W+ ESINVGHADLR   W
Sbjct: 680 EDYPYATDGLMIWTAIENWVRSYVNHYYLDSSLVCNDKELQAWYAESINVGHADLRHADW 739

Query: 395 WPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPF 439
           WPTL   +DL  IL TIIWLASAQHAALNFGQ PYGGYVPNRPP 
Sbjct: 740 WPTLATPEDLTSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPL 784

Source: Olea europaea

Species: Olea europaea

Genus: Olea

Family: Oleaceae

Order: Lamiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|14589309|emb|CAC43237.1| lipoxygenase [Sesbania rostrata] Back     alignment and taxonomy information
>gi|356506132|ref|XP_003521841.1| PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|407930085|gb|AFU51541.1| lipoxygenase 2 [Capsicum annuum] Back     alignment and taxonomy information
>gi|32454714|gb|AAP83138.1| lipoxygenase [Nicotiana attenuata] Back     alignment and taxonomy information
>gi|356519798|ref|XP_003528556.1| PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|28911945|gb|AAO48953.1| lipoxygenase [Nicotiana attenuata] Back     alignment and taxonomy information
>gi|268636249|gb|ACZ17393.1| lipoxygenase [Vitis vinifera] Back     alignment and taxonomy information
>gi|75277588|sp|O24371.1|LOX31_SOLTU RecName: Full=Linoleate 13S-lipoxygenase 3-1, chloroplastic; Flags: Precursor gi|1495804|emb|CAA65269.1| 13-lipoxygenase [Solanum tuberosum] Back     alignment and taxonomy information
>gi|147826997|emb|CAN77777.1| hypothetical protein VITISV_021889 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
TAIR|locus:2018848 919 LOX3 "lipoxygenase 3" [Arabido 0.338 0.163 0.624 1.2e-133
TAIR|locus:2030215 926 LOX4 "lipoxygenase 4" [Arabido 0.338 0.161 0.612 1.4e-128
TAIR|locus:2008808 917 LOX6 "lipoxygenase 6" [Arabido 0.404 0.195 0.540 6.4e-111
TAIR|locus:2087837 886 LOX5 [Arabidopsis thaliana (ta 0.417 0.208 0.481 9.8e-98
UNIPROTKB|P29250 870 LOX1.1 "Linoleate 9S-lipoxygen 0.404 0.205 0.466 3e-95
UNIPROTKB|P38419 924 CM-LOX1 "Lipoxygenase 7, chlor 0.404 0.193 0.488 1.3e-94
TAIR|locus:2011030 859 LOX1 "lipoxygenase 1" [Arabido 0.417 0.215 0.446 4.4e-90
TAIR|locus:2096915 896 LOX2 "lipoxygenase 2" [Arabido 0.316 0.156 0.484 6e-65
UNIPROTKB|I3L1D5664 ALOX15B "Arachidonate 15-lipox 0.661 0.441 0.309 3.6e-20
MGI|MGI:87999 674 Alox5 "arachidonate 5-lipoxyge 0.564 0.370 0.275 2.5e-19
TAIR|locus:2018848 LOX3 "lipoxygenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 512 (185.3 bits), Expect = 1.2e-133, Sum P(3) = 1.2e-133
 Identities = 108/173 (62%), Positives = 127/173 (73%)

Query:   250 AHVCSNDARV--------RTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALAR 301
             AHV SNDA V        RTHAC+EPFIL AHRQLSAMHPI+KLLDPHMRYTLEINALAR
Sbjct:   563 AHVSSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALAR 622

Query:   302 KNLINADGVID-------------ASMFKS-WRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
             ++LI+ADGVI+             A+ +KS WRFD EGLPADLIRRG+A+PD TQP GLK
Sbjct:   623 QSLISADGVIEGGFTAGAYGMEMSAAAYKSSWRFDMEGLPADLIRRGMAIPDATQPHGLK 682

Query:   348 LLIEDYPYAADGLLIWSAIEDWVRTYLKSWHNESINVGHADLRQESWWPTLTN 400
             LLIEDYPYA DGLL+WSAI+ WVRTY++ ++    N+   D   +SW+    N
Sbjct:   683 LLIEDYPYANDGLLLWSAIQTWVRTYVERYYPNP-NLIKTDSELQSWYSESIN 734
GO:0009507 "chloroplast" evidence=ISM
GO:0009611 "response to wounding" evidence=IEP;RCA;TAS
GO:0009644 "response to high light intensity" evidence=IEP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA
GO:0016165 "lipoxygenase activity" evidence=IDA
GO:0009620 "response to fungus" evidence=IEP;RCA
GO:0009555 "pollen development" evidence=IGI
GO:0009901 "anther dehiscence" evidence=IGI
GO:0048653 "anther development" evidence=IGI
GO:0080086 "stamen filament development" evidence=IGI
GO:0034440 "lipid oxidation" evidence=IDA
GO:0009693 "ethylene biosynthetic process" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;TAS
GO:0010200 "response to chitin" evidence=RCA
GO:0006952 "defense response" evidence=TAS
GO:0040007 "growth" evidence=TAS
TAIR|locus:2030215 LOX4 "lipoxygenase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008808 LOX6 "lipoxygenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087837 LOX5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P29250 LOX1.1 "Linoleate 9S-lipoxygenase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P38419 CM-LOX1 "Lipoxygenase 7, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2011030 LOX1 "lipoxygenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096915 LOX2 "lipoxygenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|I3L1D5 ALOX15B "Arachidonate 15-lipoxygenase B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:87999 Alox5 "arachidonate 5-lipoxygenase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.13.11.120.824
3rd Layer1.13.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
PLN02264 919 PLN02264, PLN02264, lipoxygenase 0.0
PLN02305 918 PLN02305, PLN02305, lipoxygenase 0.0
PLN02337 866 PLN02337, PLN02337, lipoxygenase 1e-165
pfam00305 667 pfam00305, Lipoxygenase, Lipoxygenase 1e-160
>gnl|CDD|215148 PLN02264, PLN02264, lipoxygenase Back     alignment and domain information 
 Score =  700 bits (1809), Expect = 0.0
 Identities = 323/525 (61%), Positives = 366/525 (69%), Gaps = 110/525 (20%)

Query: 25  VFNDLGNPDRGSEFVRPTLGGEQRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDEQ 84
           V+NDLGNPD+  E  RPTLGG++ PYPRRCRTGRLPTD+DM AESR+EKPLPMYVPRDEQ
Sbjct: 266 VYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMMAESRVEKPLPMYVPRDEQ 325

Query: 85  FEESKHDAFSAGRLKAALRNLIPLLKASISAHN-RDFRD--------------------- 122
           FEESK D F+AGRLKA L NLIP LKASI A +  +F +                     
Sbjct: 326 FEESKQDTFAAGRLKAVLHNLIPSLKASILAEDFANFGEIDSLYKEGLLLKLGFQDDIFK 385

Query: 123 ------------------------------KFAWLQDDEFACQALAGVNPVTIDGLQAFP 152
                                         KFAWL+DDEFA QA+AG+NPV I+ ++ FP
Sbjct: 386 KFPLPKVVTTLQESSEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFP 445

Query: 153 PVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINALD 212
           PVSNLDP IYGPQ SAL E+HIIG LDG+SVQQ L+EN+L+++D H IYLPFLD+INALD
Sbjct: 446 PVSNLDPEIYGPQHSALTEDHIIGHLDGLSVQQALEENRLFMVDYHDIYLPFLDRINALD 505

Query: 213 GRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSA--------------------AHV 252
           GRKAYATRTIFFL  LG LKPIAIELSLPPSGP+  +                    AHV
Sbjct: 506 GRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPNSRSKRVVTPPVDATSNWMWQLAKAHV 565

Query: 253 CSNDARV--------RTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNL 304
           CSNDA V        RTHAC+EPFIL AHRQLSAMHPI+KLLDPHMRYTLEINALAR+ L
Sbjct: 566 CSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQTL 625

Query: 305 INADGVID-------------ASMFKS-WRFDKEGLPADLIRRGIAVPDPTQPDGLKLLI 350
           I+ADGVI+             A+ +K+ WRFD EGLPADLIRRG+AVPDPTQP GLKLLI
Sbjct: 626 ISADGVIESCFTAGQYGMEISAAAYKNSWRFDMEGLPADLIRRGMAVPDPTQPHGLKLLI 685

Query: 351 EDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQESW 394
           EDYPYA DGLL+WSAI+ WVRTY                L++W++ESINVGHADLR   W
Sbjct: 686 EDYPYANDGLLLWSAIQTWVRTYVERYYPDPSLICTDKELQAWYSESINVGHADLRDADW 745

Query: 395 WPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPF 439
           WP L+  DDLV IL T+IWLASAQHAALNFGQ PYGGYVPNRPP 
Sbjct: 746 WPKLSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPL 790

Length = 919
>gnl|CDD|215174 PLN02305, PLN02305, lipoxygenase Back     alignment and domain information
>gnl|CDD|215193 PLN02337, PLN02337, lipoxygenase Back     alignment and domain information
>gnl|CDD|215847 pfam00305, Lipoxygenase, Lipoxygenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 443
PLN02305 918 lipoxygenase 100.0
PLN02264 919 lipoxygenase 100.0
PLN02337 866 lipoxygenase 100.0
PF00305 667 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Li 100.0
>PLN02305 lipoxygenase Back     alignment and domain information 
Probab=100.00  E-value=4.4e-156  Score=1267.77  Aligned_cols=434  Identities=62%  Similarity=1.097  Sum_probs=414.2

Q ss_pred             eeccCCCC------CccccccccccCCCCCCCCCCcccccCCCCCCccCcCCCCCCCCCCCCCCccCCCCCCCCccCCCC
Q 043147           10 LLLAGNPS------TKSMVHFVFNDLGNPDRGSEFVRPTLGGEQRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE   83 (443)
Q Consensus        10 ~~~~g~~~------~riydy~~yndlg~p~~~~~~~rp~lgg~~~pyprr~rtgr~~~~~d~~~e~~~~~~~~~ylP~de   83 (443)
                      +.|||||.      |||||||||||||+||+|++++||||||++|||||||||||+|+++||.+|||....+++||||||
T Consensus       241 ~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~YvPrDE  320 (918)
T PLN02305        241 LSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPVYVPRDE  320 (918)
T ss_pred             HHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCcCCCCCC
Confidence            46999996      599999999999999999999999999999999999999999999999999997766678999999


Q ss_pred             ccCcccccchhhchHHHHHHHHhHHHHHHhhhccccc-------------------------------------------
Q 043147           84 QFEESKHDAFSAGRLKAALRNLIPLLKASISAHNRDF-------------------------------------------  120 (443)
Q Consensus        84 ~f~~~K~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~f-------------------------------------------  120 (443)
                      +|+++|++||.++++|+++|.++|.++++++.+..+|                                           
T Consensus       321 ~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~p~~~~~~~~i~~~~~~  400 (918)
T PLN02305        321 TFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTEEPKDIGLNPFLGNFMKQVLSVSER  400 (918)
T ss_pred             CcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCchhhhhhhcCCchHHHHHHhhhcccc
Confidence            9999999999999999999999999998766544444                                           


Q ss_pred             -----------cccccccccHHHHhHHhhCCCcccccccCCCCCCCCCCCccCCCCCccccHHHHhhccCCCcHHHHhhc
Q 043147          121 -----------RDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKE  189 (443)
Q Consensus       121 -----------~~~~~W~~D~eFgrQ~LaG~NP~~I~r~~~~P~~~~ld~~~yg~~~~~it~~~i~~~l~g~tl~~al~~  189 (443)
                                 .++++|++|+|||||+|||+||++|+||++||++|+|||++||+++|+||+|||+..|+|+||+|||++
T Consensus       401 ~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G~TleeAl~~  480 (918)
T PLN02305        401 LLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEGMTVEKAIEE  480 (918)
T ss_pred             cccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCCCcHHHHHHc
Confidence                       457789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEeecCccccccccccccCCCcccccceeEEEeCCCCCeeeEEEEecCCCCC-------------C---c--c--cc
Q 043147          190 NKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSG-------------P---D--Q--SA  249 (443)
Q Consensus       190 grLfi~Dy~d~~lp~l~~~n~~~~~~~yA~~~Lffl~~~g~L~PiAIqL~~p~~~-------------~---~--~--AK  249 (443)
                      |||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||++|++.             +   .  |  ||
T Consensus       481 ~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~~w~W~LAK  560 (918)
T PLN02305        481 KRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATTHWIWKLAK  560 (918)
T ss_pred             CCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999986531             1   1  2  99


Q ss_pred             eeeecccccc--------ccccchhhHHHHHhccCCccCchhhhcchhhhhhccccHHHHhcccCCCCcccc--------
Q 043147          250 AHVCSNDARV--------RTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDA--------  313 (443)
Q Consensus       250 ~~v~~aD~~~--------~TH~v~Epf~iAt~RqLs~~HPI~kLL~PH~r~tl~IN~~AR~~LI~~gG~ie~--------  313 (443)
                      |||++||+++        +||++||||+|||+||||++|||||||.||||+||+||++||++|||+||++|+        
T Consensus       561 ~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiie~~fspg~~~  640 (918)
T PLN02305        561 AHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEACFSPGKYA  640 (918)
T ss_pred             HHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCceeeeeccchhH
Confidence            9999999998        999999999999999999999999999999999999999999999999999998        


Q ss_pred             -----ccccc-cccCCCCCchHHHhcCCCCCCCCCCCccccCCCCCccchhhHHHHHHHHHHHHHHH-------------
Q 043147          314 -----SMFKS-WRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYL-------------  374 (443)
Q Consensus       314 -----~~yk~-w~f~~~~lP~dL~~RG~~~~D~~~~~gl~~~l~~YpYrdDgL~iW~aI~~~V~~yv-------------  374 (443)
                           ++|+. |+|++++||+||++|||+++|+++||||++.|||||||||||+||+||++||++||             
T Consensus       641 ~elss~aYk~~w~Fd~~~LP~DL~kRGva~~D~~~p~gl~l~ipdYPYrdDGL~IW~AIk~wV~~yV~~YY~~D~~V~~D  720 (918)
T PLN02305        641 MELSSAAYKSMWRFDMEALPADLIRRGMAEEDPSMPCGVRLVIEDYPYAADGLLIWSAIKEWVESYVDHFYSEPNSITSD  720 (918)
T ss_pred             HHHHHHHHHhcCcCccccCHHHHHHcCCCccCCCCcccccccCCCCchhhhhHHHHHHHHHHHHHHHHhhCCChhhhccC
Confidence                 56886 99999999999999999999999999999999999999999999999999999999             


Q ss_pred             ---HHHHHHHhhccccccccCCCCCCCCChHHHHHHHhHHhhhcccchhhhccCCCcccccCCCCCCCCCCC
Q 043147          375 ---KSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW  443 (443)
Q Consensus       375 ---QaW~~Ei~~~G~~d~~~~~~~p~~~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gf~PN~P~~~r~~  443 (443)
                         |+||+||+++||+|+++.+|||+|+|++|||++||+|||+|||||||||||||+|+||+||+|++||++
T Consensus       721 ~ELQaW~~Ei~~~Gh~d~kd~~~~p~l~T~~eLi~~lT~IIwtaSaqHAAVNFgQydy~gfvPN~P~~~Rrp  792 (918)
T PLN02305        721 LELQAWWDEIKNKGHYDKRNEPWWPKLNTKEDLSGILTTMIWIASGQHAAINFGQYPFGGYVPNRPTLMRKL  792 (918)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCcCCcCHHHHHHHHHhhhhhcchhhhhhhcCCcccccccCCCchhhcCC
Confidence               999999999999999999999999999999999999999999999999999999999999999999985

>PLN02264 lipoxygenase Back     alignment and domain information
>PLN02337 lipoxygenase Back     alignment and domain information
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
1fgo_A 839 Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Leng 1e-104
2sbl_B 839 The Three-Dimensional Structure Of An Arachidonic A 1e-104
3pzw_A 839 Soybean Lipoxygenase-1 - Re-Refinement Length = 839 1e-104
1fgq_A 839 Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Leng 1e-104
3bnd_A 839 Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 1e-103
1fgr_A 839 Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Leng 1e-103
3bnb_A 839 Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 1e-103
1fgm_A 839 Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Leng 1e-103
1y4k_A 839 Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Leng 1e-103
3bnc_A 839 Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 1e-103
3bne_A 839 Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 1e-103
1fgt_A 839 Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Leng 1e-103
2iuk_A 864 Crystal Structure Of Soybean Lipoxygenase-D Length 1e-97
2iuj_A 853 Crystal Structure Of Soybean Lipoxygenase-B Length 5e-96
1ik3_A 857 Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydrope 2e-90
1rov_A 857 Lipoxygenase-3 Treated With Cumene Hydroperoxide Le 4e-90
3dy5_A1066 Allene Oxide Synthase 8r-Lipoxygenase From Plexaura 2e-27
3fg1_A696 Crystal Structure Of Delta413-417:gs Lox Length = 6 2e-27
2fnq_A699 Insights From The X-Ray Crystal Structure Of Coral 3e-27
3fg4_A696 Crystal Structure Of Delta413-417:gs I805a Lox Leng 1e-26
3fg3_A696 Crystal Structure Of Delta413-417:gs I805w Lox Leng 2e-26
3v98_A691 S663d Stable-5-Lox Length = 691 3e-22
3v92_B691 S663a Stable-5-Lox Length = 691 3e-22
3o8y_A691 Stable-5-Lipoxygenase Length = 691 3e-22
1lox_A662 Rabbit Reticulocyte 15-Lipoxygenase Length = 662 2e-21
2p0m_A662 Revised Structure Of Rabbit Reticulocyte 15s-Lipoxy 2e-21
3vf1_A698 Structure Of A Calcium-Dependent 11r-Lipoxygenase S 3e-21
3rde_A573 Crystal Structure Of The Catalytic Domain Of Porcin 2e-19
3d3l_A 541 The 2.6 A Crystal Structure Of The Lipoxygenase Dom 2e-17
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Length = 839 Back     alignment and structure 
Iteration: 1

 Score =  374 bits (960), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/526 (41%), Positives = 285/526 (54%), Gaps = 118/526 (22%)
Query: 25  VFNDLGNPDRGSEFVRPTLGGEQR-PYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
           V+NDLGNPD+  +  RP LGG    PYPRR RTGR PT TD + E + E     YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 244
Query: 84  QFEESK-HDAFSAGR------LKAALRNLIPLLKASISAHN-RDFRDKF----------- 124
                K  DA   G       ++ A  +   L    I  H+ +D  D +           
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304
Query: 125 ----------------------------------AWLQDDEFACQALAGVNPVTIDGLQA 150
                                             AW+ D+EFA + +AGVNP  I GL+ 
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364
Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
           FPP SNLDPAIYG Q S +  + +   LDG ++ + L   +L++LD H I++P++ +IN 
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422
Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSAA-------------------- 250
           L+  K YATRTI FL   G LKP+AIELSLP S  D SAA                    
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482
Query: 251 --HVCSNDAR--------VRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
             +V  ND+         + THA MEPF++  HR LS +HPIYKLL PH R  + INALA
Sbjct: 483 KAYVIVNDSCYHALMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542
Query: 301 RKNLINADGVID-------------ASMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
           R++LINA+G+I+             ++++K+W F  + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGIIETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602
Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
           LLIEDYPYAADGL IW+AI+ WV+ Y                L+ W  E++  GH DL+ 
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662
Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRP 437
           + WWP L   +DLV +   IIW+ASA HAA+NFGQ PYGG + NRP
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRP 708
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15- Lipoxygenase Length = 839 Back     alignment and structure
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement Length = 839 Back     alignment and structure
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Length = 839 Back     alignment and structure
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 Back     alignment and structure
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Length = 839 Back     alignment and structure
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 Back     alignment and structure
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Length = 839 Back     alignment and structure
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Length = 839 Back     alignment and structure
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 Back     alignment and structure
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 Back     alignment and structure
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Length = 839 Back     alignment and structure
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D Length = 864 Back     alignment and structure
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B Length = 853 Back     alignment and structure
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy- 9(Z),11(E)-Octadecadienoic Acid Length = 857 Back     alignment and structure
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide Length = 857 Back     alignment and structure
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura Homomalla Length = 1066 Back     alignment and structure
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox Length = 696 Back     alignment and structure
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r- Lipoxygenase: Calcium Activation Via A C2-Like Domain And A Structural Basis Of Product Chirality Length = 699 Back     alignment and structure
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox Length = 696 Back     alignment and structure
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox Length = 696 Back     alignment and structure
>pdb|3V98|A Chain A, S663d Stable-5-Lox Length = 691 Back     alignment and structure
>pdb|3V92|B Chain B, S663a Stable-5-Lox Length = 691 Back     alignment and structure
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase Length = 691 Back     alignment and structure
>pdb|1LOX|A Chain A, Rabbit Reticulocyte 15-Lipoxygenase Length = 662 Back     alignment and structure
>pdb|2P0M|A Chain A, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase Length = 662 Back     alignment and structure
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests A Mechanism For Ca-Regulation Length = 698 Back     alignment and structure
>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine Leukocyte 12- Lipoxygenase Length = 573 Back     alignment and structure
>pdb|3D3L|A Chain A, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp Target) Length = 541 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
1f8n_A 839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 1e-135
2iuj_A 853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 1e-131
2iuk_A 864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 1e-131
3rde_A573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 1e-93
3v98_A691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 2e-90
1lox_A662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 2e-88
3dy5_A1066 Allene oxide synthase-lipoxygenase protein; fusion 2e-84
3fg1_A696 Allene oxide synthase-lipoxygenase protein; arichi 9e-84
3d3l_A 541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 1e-82
3vf1_A698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 8e-79
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Length = 839 Back     alignment and structure
 Score =  408 bits (1050), Expect = e-135
 Identities = 210/527 (39%), Positives = 280/527 (53%), Gaps = 118/527 (22%)

Query: 25  VFNDLGNPDRGSEFVRPTLGG-EQRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
           V+NDLGNPD+  +  RP LGG    PYPRR RTGR PT TD + E + E     YVPRDE
Sbjct: 188 VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGE---VFYVPRDE 244

Query: 84  QFEESKHDAFSAGRLKAALRNLIPLLKASI--SAHNRDF--------------------- 120
                K         K+  + + P  +++    +   +F                     
Sbjct: 245 NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 304

Query: 121 ------------------------------RDKFAWLQDDEFACQALAGVNPVTIDGLQA 150
                                           + AW+ D+EFA + +AGVNP  I GL+ 
Sbjct: 305 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 364

Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
           FPP SNLDPAIYG Q S +  + +   LDG ++ + L   +L++LD H I++P++ +IN 
Sbjct: 365 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422

Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSA--------------------- 249
           L+  K YATRTI FL   G LKP+AIELSLP S  D SA                     
Sbjct: 423 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 482

Query: 250 -AHVCSNDA--------RVRTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
            A+V  ND+         + THA MEPF++  HR LS +HPIYKLL PH R  + INALA
Sbjct: 483 KAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 542

Query: 301 RKNLINADGVIDASM-------------FKSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
           R++LINA+G+I+ +              +K+W F  + LPADLI+RG+A+ DP+ P G++
Sbjct: 543 RQSLINANGIIETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 602

Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
           LLIEDYPYAADGL IW+AI+ WV+ Y                L+ W  E++  GH DL+ 
Sbjct: 603 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 662

Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPP 438
           + WWP L   +DLV +   IIW+ASA HAA+NFGQ PYGG + NRP 
Sbjct: 663 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPT 709
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Length = 853 Back     alignment and structure
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Length = 864 Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Length = 573 Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Length = 691 Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Length = 662 Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Length = 1066 Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Length = 696 Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Length = 541 Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Length = 698 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
2iuk_A 864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 100.0
2iuj_A 853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 100.0
1f8n_A 839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 100.0
1lox_A662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 100.0
3rde_A573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 100.0
3fg1_A696 Allene oxide synthase-lipoxygenase protein; arichi 100.0
3v98_A691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 100.0
3vf1_A698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 100.0
3dy5_A1066 Allene oxide synthase-lipoxygenase protein; fusion 100.0
3d3l_A 541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 100.0
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Back     alignment and structure
Probab=100.00  E-value=2.9e-147  Score=1206.82  Aligned_cols=428  Identities=48%  Similarity=0.868  Sum_probs=405.0

Q ss_pred             eeccCCCC------CccccccccccCCCCCCCCCCcccccCCC-CCCccCcCCCCCCCCCCCCCCccCCCCCCCCccCCC
Q 043147           10 LLLAGNPS------TKSMVHFVFNDLGNPDRGSEFVRPTLGGE-QRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRD   82 (443)
Q Consensus        10 ~~~~g~~~------~riydy~~yndlg~p~~~~~~~rp~lgg~-~~pyprr~rtgr~~~~~d~~~e~~~~~~~~~ylP~d   82 (443)
                      ..|||||.      |||||||||||||+||++++  ||||||| ++||||||||||+|+++||.+|+|..    +|||||
T Consensus       193 ~~lrg~g~g~rk~~driydyd~yndlg~pd~~~~--rpvlggs~~~pyPrR~rtgr~~~~~dp~~e~~~~----~yvPrD  266 (864)
T 2iuk_A          193 EVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDP--RPILGGCSIYPYPLRVRTGRERTRTDPNSEKPGE----VYVPRD  266 (864)
T ss_dssp             HHHHCCSCSCCCTTCCCCCEECBCCSCBGGGTBC--CCCBSSSSSSCCCCEECCCCCBCSSCTTSBCCCC----CCCCGG
T ss_pred             HHhcCCCCCcccccccchhhhhhhcCCCcccCCC--CcccCCCCCCCCCccccCCCCCCCCCCCcccccc----CCCCCC
Confidence            46899975      59999999999999999988  9999996 99999999999999999999999942    999999


Q ss_pred             CccCcccccchhhchHHHHHHHHhHHHHHHhh--h-ccccc---------------------------------------
Q 043147           83 EQFEESKHDAFSAGRLKAALRNLIPLLKASIS--A-HNRDF---------------------------------------  120 (443)
Q Consensus        83 e~f~~~K~~~f~~~~~~~~~~~~~~~~~~~~~--~-~~~~f---------------------------------------  120 (443)
                      |+|++.|.+||.++++|++++.++|.++++++  + ...+|                                       
T Consensus       267 e~F~~~K~~~f~~~~~k~~~~~~~p~l~~~~~~~~~~~~~f~sf~di~~ly~~g~~l~~~~~~~~~p~~~~~~~~~~~~e  346 (864)
T 2iuk_A          267 ENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQISPLPALKEIFRTDGE  346 (864)
T ss_dssp             GSCCCSSGGGCHHHHHHHHHHTTHHHHHHHHHSSCSSCSSCCSHHHHHTTTSSCEECCHHHHHHHSSCTTTTTTCBCTTS
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHhccccCchhhhcccCcHHHHHHHhhcccc
Confidence            99999999999999999999999999988774  1 22222                                       


Q ss_pred             ------------cccccccccHHHHhHHhhCCCcccccccCCCCCCCCCCCccCCCCCccccHHHHhhccCCCcHHHHhh
Q 043147          121 ------------RDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLK  188 (443)
Q Consensus       121 ------------~~~~~W~~D~eFgrQ~LaG~NP~~I~r~~~~P~~~~ld~~~yg~~~~~it~~~i~~~l~g~tl~~al~  188 (443)
                                  .++++|++|+|||||+|||+||++|++|++||++|+|||++||+++|+||++||+..++|+||+|||+
T Consensus       347 ~~lk~p~P~vi~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~yg~~~s~it~e~i~~~l~g~tl~eal~  426 (864)
T 2iuk_A          347 NVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGGVTVEEALS  426 (864)
T ss_dssp             SEEBCCCCSSCSCSSSSSSCHHHHHHHHHHSSSCSCCEECSSSSCCCCSCHHHHCCCCCCCCHHHHGGGTTTCCHHHHHH
T ss_pred             chhcCCCcceecccchhhhchHHHHHHHhcCCCchhhhhhhccCCcccCChhhcCCcccccCHHHHhhccCCCcHHHHHh
Confidence                        13479999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEeecCccccccccccccCCCcccccceeEEEeCCCCCeeeEEEEecCCCCC---------------Cc-----c-
Q 043147          189 ENKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSG---------------PD-----Q-  247 (443)
Q Consensus       189 ~grLfi~Dy~d~~lp~l~~~n~~~~~~~yA~~~Lffl~~~g~L~PiAIqL~~p~~~---------------~~-----~-  247 (443)
                      +|||||+||||++|||++++|+++++++|||+||||++++|+|+||||||++|++.               +.     | 
T Consensus       427 ~grLFi~Dy~d~~lp~l~~in~~~~~~~YAp~~Lffl~~dG~L~PlAIqLs~p~~~~~~~~~~~~VftP~dd~~~~~~W~  506 (864)
T 2iuk_A          427 TQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWL  506 (864)
T ss_dssp             TTCEEEEECHHHHGGGHHHHHTSTTCCCCEEEEEEEECTTSCEEEEEEEEEECCSSSSSSCCEEEEECCCSSSSHHHHHH
T ss_pred             cCCEEEecchhhhccchhhcccCCCceeecceEEEEEcCCCCEeEEEEEeeCCCCCccccCCCCCeECCCCCCCCchHHH
Confidence            99999999999999999999999999999999999999999999999999987531               11     1 


Q ss_pred             -cceeeecccccc--------ccccchhhHHHHHhccCCccCchhhhcchhhhhhccccHHHHhcccCCCCcccc-----
Q 043147          248 -SAAHVCSNDARV--------RTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDA-----  313 (443)
Q Consensus       248 -AK~~v~~aD~~~--------~TH~v~Epf~iAt~RqLs~~HPI~kLL~PH~r~tl~IN~~AR~~LI~~gG~ie~-----  313 (443)
                       ||+||++||+++        +||+++|||+|||+||||++|||||||.||||+||+||++||+.||+++|++|+     
T Consensus       507 LAK~~v~~aD~~~HqlisHll~THlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~AR~~LI~~gGiie~~~~~G  586 (864)
T 2iuk_A          507 LAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPG  586 (864)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHSCTTCHHHHHHGGGGTTHHHHHHHHHHHTSSTTSHHHHHSTTG
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCccCchHHhhHHHHHHHHHHHHHHHHhccCCCCceeeeccCc
Confidence             999999999987        999999999999999999999999999999999999999999999999999998     


Q ss_pred             --------ccccccccCCCCCchHHHhcCCCCCCCCCCCccccCCCCCccchhhHHHHHHHHHHHHHHH-----------
Q 043147          314 --------SMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYL-----------  374 (443)
Q Consensus       314 --------~~yk~w~f~~~~lP~dL~~RG~~~~D~~~~~gl~~~l~~YpYrdDgL~iW~aI~~~V~~yv-----------  374 (443)
                              ++|+.|+|++++||+||++|||+++|+++||||++.|||||||+|||+||+||++||++||           
T Consensus       587 ~~~~elss~ayk~w~f~~~~LP~DL~~RGva~~D~~~p~gl~l~ipdYpYadDGL~iW~AIk~~V~~yV~~YY~sD~~V~  666 (864)
T 2iuk_A          587 KYSIEMSSSVYKNWVFTHQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQ  666 (864)
T ss_dssp             GGHHHHHHHHHTTCCGGGSSHHHHHHHTTSEEECSSSTTSEEESSSCCHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred             hhHHHHHHHHHccCCCccccCcHHHHhcCCCCCCccccccccccCCCCCccccHHHHHHHHHHHHHHHHHHHcCCchhhc
Confidence                    5689999999999999999999999999999999999999999999999999999999999           


Q ss_pred             -----HHHHHHHhhccccccccCCCCCCCCChHHHHHHHhHHhhhcccchhhhccCCCcccccCCCCCCCCCCC
Q 043147          375 -----KSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW  443 (443)
Q Consensus       375 -----QaW~~Ei~~~G~~d~~~~~~~p~~~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gf~PN~P~~~r~~  443 (443)
                           |+||+||+++||+++++.+|||+|+|+++||++||+|||+||+||||||||||+|+||+||+|++||++
T Consensus       667 ~D~ELQaW~~Ei~~~Gh~d~kd~~~~P~l~T~~eLi~~lT~IIf~aSaqHAAVNFgQydy~gfvPN~P~~~r~p  740 (864)
T 2iuk_A          667 QDTELQAWWKEAVEKGHGDLKEKPWWPKKQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRF  740 (864)
T ss_dssp             HCHHHHHHHHHHHHTTTGGGTTCTTCCCSSSHHHHHHHHHHHHHHHTHHHHHHHTTHHHHHTSTTTSCCCCCSC
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCHHHHHHHhheeeecccchhhhhccccchhhcccCCCChhhcCC
Confidence                 999999999999999999999999999999999999999999999999999999999999999999974
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Back     alignment and structure
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 443
d3bnea1 690 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal dom 1e-166
d2p0ma1551 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Ory 1e-105
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 690 Back     information, alignment and structure

class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

 Score =  481 bits (1240), Expect = e-166
 Identities = 209/527 (39%), Positives = 276/527 (52%), Gaps = 118/527 (22%)

Query: 25  VFNDLGNPDRGSEFVRPTLGG-EQRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRDE 83
           V+NDLGNPD+  +  RP LGG    PYPRR RTGR PT TD + E + E     YVPRDE
Sbjct: 39  VYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRDE 95

Query: 84  QFEESKHDAFSAGRLKAALRNLIPLLKASISA--HNRDF--------------------- 120
                K         K+  + + P  +++        +F                     
Sbjct: 96  NLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVI 155

Query: 121 ------------------------------RDKFAWLQDDEFACQALAGVNPVTIDGLQA 150
                                           + AW+ D+EFA + +AGVNP  I GL+ 
Sbjct: 156 STIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEE 215

Query: 151 FPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKENKLYVLDCHHIYLPFLDKINA 210
           FPP SNLDPAIYG Q S +  + +   LDG ++ + L   +L++LD H I++P++ +IN 
Sbjct: 216 FPPKSNLDPAIYGDQSSKITADSL--DLDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 273

Query: 211 LDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGPDQSA--------------------- 249
           L+  K YATRTI FL   G LKP+AIELSLP S  D SA                     
Sbjct: 274 LNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLA 333

Query: 250 -AHVCSNDARV--------RTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALA 300
            A+V  ND+           THA MEPF++  HR LS +HPIYKLL PH R  + INALA
Sbjct: 334 KAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALA 393

Query: 301 RKNLINADGVIDASMF-------------KSWRFDKEGLPADLIRRGIAVPDPTQPDGLK 347
           R++LINA+G+ + +               K+W F  + LPADLI+RG+A+ DP+ P G++
Sbjct: 394 RQSLINANGIAETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVR 453

Query: 348 LLIEDYPYAADGLLIWSAIEDWVRTY----------------LKSWHNESINVGHADLRQ 391
           LLIEDYPYAADGL IW+AI+ WV+ Y                L+ W  E++  GH DL+ 
Sbjct: 454 LLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKD 513

Query: 392 ESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPP 438
           + WWP L   +DLV +   IIW+ASA HAA+NFGQ PYGG + NRP 
Sbjct: 514 KPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPT 560
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 551 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
d3bnea1 690 Lipoxigenase, C-terminal domain {Soybean (Glycine 100.0
d2p0ma1551 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T 100.0
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

Probab=100.00  E-value=1.9e-148  Score=1198.47  Aligned_cols=429  Identities=48%  Similarity=0.878  Sum_probs=408.0

Q ss_pred             eeccCCCC------CccccccccccCCCCCCCCCCcccccCCC-CCCccCcCCCCCCCCCCCCCCccCCCCCCCCccCCC
Q 043147           10 LLLAGNPS------TKSMVHFVFNDLGNPDRGSEFVRPTLGGE-QRPYPRRCRTGRLPTDTDMHAESRIEKPLPMYVPRD   82 (443)
Q Consensus        10 ~~~~g~~~------~riydy~~yndlg~p~~~~~~~rp~lgg~-~~pyprr~rtgr~~~~~d~~~e~~~~~~~~~ylP~d   82 (443)
                      ..|||||+      |||||||||||||+||+|++++||||||+ +|||||||||||+||++||.+|||...   +|||||
T Consensus        18 ~~lrg~g~g~~~~~driydy~~yndlg~pd~~~~~~rp~lgg~~~~pyprr~rtgr~~~~~dp~~e~r~~~---~yvPrd   94 (690)
T d3bnea1          18 KSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FYVPRD   94 (690)
T ss_dssp             HHHHCCSCSCCCTTCCCCCEECBCSSCCTTTCGGGCCCCBSSSSSSCCCCEECCCCCBCSSCTTSBCCCSS---CCCCGG
T ss_pred             HHhCCCCCCCCCcccccccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCC---CCCCCC
Confidence            46999986      59999999999999999999999999997 799999999999999999999999664   999999


Q ss_pred             CccCcccccchhhchHHHHHHHHhHHHHHHhh--hccccc----------------------------------------
Q 043147           83 EQFEESKHDAFSAGRLKAALRNLIPLLKASIS--AHNRDF----------------------------------------  120 (443)
Q Consensus        83 e~f~~~K~~~f~~~~~~~~~~~~~~~~~~~~~--~~~~~f----------------------------------------  120 (443)
                      |+|+++|.+||.++++|++++.++|.++++++  ++..+|                                        
T Consensus        95 e~f~~~k~~~f~~~~~~~~~~~~~p~~~~~~~~~~~~~~f~~f~~i~~ly~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (690)
T d3bnea1          95 ENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTIIPLPVIKELYRTDGQH  174 (690)
T ss_dssp             GSCCCSSGGGCHHHHHHHHHHTHHHHHHHHHHTTSSCSSCCSHHHHHGGGTTCEECCHHHHHHHTTSTTGGGGCEECSSS
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccCchhhhhhcccHHHHHHHhhccccc
Confidence            99999999999999999999999999998765  233333                                        


Q ss_pred             -----------cccccccccHHHHhHHhhCCCcccccccCCCCCCCCCCCccCCCCCccccHHHHhhccCCCcHHHHhhc
Q 043147          121 -----------RDKFAWLQDDEFACQALAGVNPVTIDGLQAFPPVSNLDPAIYGPQESALKEEHIIGQLDGMSVQQVLKE  189 (443)
Q Consensus       121 -----------~~~~~W~~D~eFgrQ~LaG~NP~~I~r~~~~P~~~~ld~~~yg~~~~~it~~~i~~~l~g~tl~~al~~  189 (443)
                                 .++++|++|+|||||+|||+||++|+||++||++|+||++.||++.++||+++++  ++|+||++||++
T Consensus       175 ~~~f~~P~~~~~~~~~W~~D~eFarQ~LaG~NP~~Irr~~e~P~~~~l~~~~~g~~~s~it~~~i~--l~G~Tl~~Al~~  252 (690)
T d3bnea1         175 ILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSLD--LDGYTMDEALGS  252 (690)
T ss_dssp             EEECCCCGGGSSCSSGGGSHHHHHHHHHHSSSTTCCEECCSSSCCCCSCHHHHCCCCCCCCGGGCC--CTTCCHHHHHHT
T ss_pred             eeecCCchhhhccccccccHHHHHHHHhcCCCchheeeccccCCcCCCCHHHhCchhhhhhHhhhc--cCccHHHHHHHc
Confidence                       4678999999999999999999999999999999999999999999999999985  789999999999


Q ss_pred             CcEEEeecCccccccccccccCCCcccccceeEEEeCCCCCeeeEEEEecCCCCCC------------------c--c--
Q 043147          190 NKLYVLDCHHIYLPFLDKINALDGRKAYATRTIFFLNSLGPLKPIAIELSLPPSGP------------------D--Q--  247 (443)
Q Consensus       190 grLfi~Dy~d~~lp~l~~~n~~~~~~~yA~~~Lffl~~~g~L~PiAIqL~~p~~~~------------------~--~--  247 (443)
                      |||||+|||++++|+++++|...+++.|||+||||++++|+|+||||||++|++..                  .  |  
T Consensus       253 grLFi~Dy~dl~~~~~~~i~~~~~~~~~A~~~Lffl~~dG~L~PiAIqL~~~~~~~~~~~~~~~VftP~d~~~~~~~W~l  332 (690)
T d3bnea1         253 RRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLL  332 (690)
T ss_dssp             TCEEEEECHHHHHHHHHHHHTSTTCCCCEEEEEEEECTTSCEEEEEEEEECCCCTTCCCCCCCEEECCCSSHHHHHHHHH
T ss_pred             CCEEEEechhhhccccccccCcCCceeecchhheeECCCCCcccEEEEecCCCCCcccCCCCCceeCCCCCCccchHHHH
Confidence            99999999999999999999999999999999999999999999999999876311                  1  2  


Q ss_pred             cceeeecccccc--------ccccchhhHHHHHhccCCccCchhhhcchhhhhhccccHHHHhcccCCCCcccc------
Q 043147          248 SAAHVCSNDARV--------RTHACMEPFILTAHRQLSAMHPIYKLLDPHMRYTLEINALARKNLINADGVIDA------  313 (443)
Q Consensus       248 AK~~v~~aD~~~--------~TH~v~Epf~iAt~RqLs~~HPI~kLL~PH~r~tl~IN~~AR~~LI~~gG~ie~------  313 (443)
                      ||+||++||+++        +||+++|||||||+||||.+|||||||.||||+||+||++||++||++||++|+      
T Consensus       333 AK~~v~~aD~~~HqlvsHll~THlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~AR~~LI~~gGiie~~~~~~~  412 (690)
T d3bnea1         333 AKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIAETTFLPSK  412 (690)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHSCTTCHHHHHHGGGGTTHHHHHHHHHHHTSSTTSHHHHHSTTGG
T ss_pred             HHHHHHHhhHHHHHHHHhhhhhhhHHHHHHHHHHhcCCccCCHHHhcchhhhhhHHHHHHHHHhccCCCCeeeecccCch
Confidence            999999999998        999999999999999999999999999999999999999999999999999998      


Q ss_pred             -------ccccccccCCCCCchHHHhcCCCCCCCCCCCccccCCCCCccchhhHHHHHHHHHHHHHHH------------
Q 043147          314 -------SMFKSWRFDKEGLPADLIRRGIAVPDPTQPDGLKLLIEDYPYAADGLLIWSAIEDWVRTYL------------  374 (443)
Q Consensus       314 -------~~yk~w~f~~~~lP~dL~~RG~~~~D~~~~~gl~~~l~~YpYrdDgL~iW~aI~~~V~~yv------------  374 (443)
                             ++|+.|+|++++||+||++|||+++|+++|||+++.|||||||||||+||+||++||++||            
T Consensus       413 ~~~el~~~ayk~w~f~~~~lP~dL~~RGv~~~d~~~p~g~~l~ipdYPYrdDgL~iW~AI~~~V~~yv~~YY~~D~~V~~  492 (690)
T d3bnea1         413 YSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVRLLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKN  492 (690)
T ss_dssp             GHHHHHHHHHTTCCGGGGSHHHHHHHTTSEEECTTSTTSEEESSSSCHHHHHHHHHHHHHHHHHHHHGGGTCSSHHHHHT
T ss_pred             hHHHHHHHHHhcCcccccCCHHHHHHcCCCcccccccccccccCCCCchhhhHHHHHHHHHHHHHHHhhhccCCcccccc
Confidence                   6799999999999999999999999999999999999999999999999999999999999            


Q ss_pred             ----HHHHHHHhhccccccccCCCCCCCCChHHHHHHHhHHhhhcccchhhhccCCCcccccCCCCCCCCCCC
Q 043147          375 ----KSWHNESINVGHADLRQESWWPTLTNGDDLVFILNTIIWLASAQHAALNFGQCPYGGYVPNRPPFDEKW  443 (443)
Q Consensus       375 ----QaW~~Ei~~~G~~d~~~~~~~p~~~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gf~PN~P~~~r~~  443 (443)
                          |+||+||+++||+++++.+|||+|+|+++||++||+|||+||+||||||||||+|+||+||+|++||++
T Consensus       493 D~ELQaW~~Ei~~~G~gd~kd~~~~p~l~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gfvPN~P~~~r~~  565 (690)
T d3bnea1         493 DSELQHWWKEAVEKGHGDLKDKPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRL  565 (690)
T ss_dssp             CHHHHHHHHHHHHTTTGGGTTCTTSCCCCSHHHHHHHHHHHHHHHTHHHHHHHTTHHHHHSSTTTSCCCBCCC
T ss_pred             CHHHHHHHHHHhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHhhccHHHhhhccccccccCcCCCCChHhcCC
Confidence                999999999999999999999999999999999999999999999999999999999999999999974
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure