Citrus Sinensis ID: 043149

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLWGNRSSDIDSAANVTATSINKNRTVIQEIQLSPLFSLGDYYDQFISGISLFFSLSNILSFSTAMKVISHHLPYGFAVTLRLLYMQLDFSKIRFRRSIWIAEVLSPVLQHYRSFRNEIKAADP
Secondary Structure (PSIPRED)
cHHHHHHcccccEEEcccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccHHHEEcccccccHHHHHHHcccHHHHHHHHHHcHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHcccccHHHHcccccccccHHHHHHHcccHHHHHHHHHccccHcEccccccccHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MVLRLIDFdrnlvrvqgregvtplhyVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDIlnwkndegntlLHISISRSHIQIVRLIVKRVRDQInarnskdntaMDMVKFHLQTKPEFEELKSMVRKaggrersslATMEIADYLKRGLTWRRKVLLFFYRSslcitdenRNALLVVAVLIATATfqaaltppqdlwgnrssdidsaANVTATSINKNRTVIQEiqlsplfslgdyyDQFISGISLFFSLSNILSFSTAMKVISHHLPYGFAVTLRLLYMQLDFSKIRFRRSIWIAEVLSPVLQHYRSFRNEIKAADP
Flexible Loop (DISEMBL)
mvlrlidfdrnlvrvqgregvtplHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQInarnskdntamdMVKFHLqtkpefeelKSMVRkaggrersslatMEIADYLKRGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLWGNRSSDIDSAANVTatsinknrtviQEIQLSPLFSLGDYYDQFISGISLFFSLSNILSFSTAMKVISHHLPYGFAVTLRLLYMQLDFSKIRFRRSIWIAEVLSPVLQHYRSFrneikaadp
Low Complexity Region (SEG)
MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCITDENRNallvvavliaTATFQAALTPPQDLWGNRSSDIDSAANVTATSINKNRTVIQEIQLSPLFSLGDYYDQfisgislffslsnilsfsTAMKVISHHLPYGFAVTLRLLYMQLDFSKIRFRRSIWIAEVLSPVLQHYRSFRNEIKAADP
Disordered region (IsUnstruct)
**LRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQIN*****************************************ATMEIADYLKRGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLWGNR**DIDSAANVTATSINKNRTVIQEIQLSPLFSLGDYYDQFISGISLFFSLSNILSFSTAMKVISHHLPYGFAVTLRLLYMQLDFSKIRFRRSIWIAEVLSPVLQHYRSF*********
Disordered Region (DISOPRED)
MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEI***************************ENRNALLVVAVLIATATFQAALTPPQDLWGNRSSDIDSAANVTATSINKNRTVIQEIQLSPLFSLGDYYDQFISGISLFFSLSNILSFSTAMKVISHHLPYGFAVTLRLLYMQLDFSKIRFRRSIWIAEVLSPVLQHYRS**********
Disordered Region (DISEMBL)
MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLWGNRSSDIDSAANVTATSINKNRTVIQEIQLSPLFSLGDYYDQFISGISLFFSLSNILSFSTAMKVISHHLPYGFAVTLRLLYMQLDFSKIRFRRSIWIAEVLSPVLQHYRSFRNEIKAADP
Disordered Region (DISPRO)
MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLWGNRSSDI***ANVTATSINKNRTVIQEIQLSPLFSLGDYYDQFISGISLFFSLSNILSFSTAMKVISHHLPYGFAVTLRLLYMQLDFSKIRFRRSIWIAEVLSPVLQHYRSFRNEIK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLWGNRSSDIDSAANVTATSINKNRTVIQEIQLSPLFSLGDYYDQFISGISLFFSLSNILSFSTAMKVISHHLPYGFAVTLRLLYMQLDFSKIRFRRSIWIAEVLSPVLQHYRSFRNEIKAADP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	344	2.2.26 [Sep-21-2011]
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.595	0.385	0.286	2e-09
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.607	0.398	0.238	2e-07
A5PMU4	1280	Ankyrin repeat and steril	no	no	0.308	0.082	0.304	5e-06
Q5ZIJ9	954	E3 ubiquitin-protein liga	no	no	0.334	0.120	0.341	8e-06
P97570	807	85/88 kDa calcium-indepen	no	no	0.273	0.116	0.303	1e-05
P42773	168	Cyclin-dependent kinase 4	yes	no	0.215	0.440	0.312	2e-05
P97819	807	85/88 kDa calcium-indepen	no	no	0.273	0.116	0.303	2e-05
Q18297	1211	Transient receptor potent	no	no	0.430	0.122	0.276	2e-05
Q495B1	522	Ankyrin repeat and death	no	no	0.325	0.214	0.291	3e-05
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.607	0.354	0.238	5e-05

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 32/237 (13%)

Query: 5   LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK-ETALHVAAK 63
           ++D D +   +  + G T LH     G + ++ K L     +I+ V  +K +TALH+A K
Sbjct: 147 MLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIV-KALIEKDAAIVGVKDKKGQTALHMAVK 205

Query: 64  YDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINAR 123
              LEV+E +L    Y     ILN ++ +GNT LHI+  ++  QI  L++     ++NA 
Sbjct: 206 GRSLEVVEEIL-QADYT----ILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAI 260

Query: 124 NSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKRGL-------- 175
           N++  TAMD+    LQ      E+   + +AG +    +   + A  LKR +        
Sbjct: 261 NNQKETAMDLAD-KLQYSESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQ 319

Query: 176 --------TWRR-----KVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPP 219
                   T RR     K L   +R ++       N++ VVAVL A+  F A    P
Sbjct: 320 SQLLQNEKTNRRVSGIAKELRKLHREAV---QNTTNSITVVAVLFASIAFLAIFNLP 373

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 34/243 (13%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           +V  L+D   +L  +    G T LH  A  G+  ++ K +      + +V  + +TALH+
Sbjct: 140 IVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHM 199

Query: 61  AAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQI 120
           A K    E+++ ++          ++N  +++GNT LHI++ ++  +IV+ ++K      
Sbjct: 200 AVKGQNTEIVDVLMEA-----DGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSR 254

Query: 121 NARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG----------------GRERSSLAT 164
            A N    TA+D+ +     K    E+  +++K G                G  R    T
Sbjct: 255 VAVNKSGETALDIAE-----KTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKET 309

Query: 165 M-----EIADYLKRGLTWRRKVLLFFYRSSLCITDENRNAL---LVVAVLIATATFQAAL 216
           +     E+   L++    RR++     R +   T+   NA+    +VA+LIAT  F A  
Sbjct: 310 VSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIF 369

Query: 217 TPP 219
             P
Sbjct: 370 NVP 372

Arabidopsis thaliana (taxid: 3702)

>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPES--ILQVTIRKETAL 58
           +VL+L+ F+ +   V   +G  PLH  A +G+VD++   +   P    + +  + KETAL
Sbjct: 73  VVLKLLQFEAS-TNVSDSKGCFPLHLAAWRGDVDIVQILIHHGPSHSRVNEQNLEKETAL 131

Query: 59  HVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           H AA+Y   EV+  +L  L   +M      +N  G T L ++     +Q+VR+++
Sbjct: 132 HCAAQYGHSEVVRVLLQELTDPSM------RNSRGETPLDLAALYGRLQVVRMLL 180

Danio rerio (taxid: 7955)

>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 11/126 (8%)

Query: 6   IDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYD 65
           IDF      VQ  +G   LHY A KGN   + K LA   + +        TALH+AA  +
Sbjct: 589 IDF-----TVQNCQGFNLLHYSALKGNKLAIKKILARARQLVDSKKEDGFTALHLAALNN 643

Query: 66  RLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNS 125
             EV E ++   R       +N KN+   T LH++I + H+ +V+L+V    D +NA + 
Sbjct: 644 HKEVAEILIKEGRC-----DVNVKNNRNQTPLHLAIIQGHVGLVQLLVSEGSD-VNAEDE 697

Query: 126 KDNTAM 131
             +TAM
Sbjct: 698 DGDTAM 703

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P97570|PLPL9_RAT 85/88 kDa calcium-independent phospholipase A2 OS=Rattus norvegicus GN=Pla2g6 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 15  VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML 74
            +  EG TPLH    KG+ ++L + +  C   +     + ETA H A + D  +VL+ +L
Sbjct: 147 TENEEGCTPLHLACRKGDSEILVELVQYCHAQMDVTDNKGETAFHYAVQGDNPQVLQ-LL 205

Query: 75  GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           G     N    LN  N++G T LH++      ++VR+++
Sbjct: 206 G----KNASAGLNQVNNQGLTPLHLACQMGKQEMVRVLL 240

Catalyzes the release of fatty acids from phospholipids. It has been implicated in normal phospholipid remodeling, nitric oxide-induced or vasopressin-induced arachidonic acid release and in leukotriene and prostaglandin production. May participate in fas mediated apoptosis and in regulating transmembrane ion flux in glucose-stimulated B-cells.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|P42773|CDN2C_HUMAN Cyclin-dependent kinase 4 inhibitor C OS=Homo sapiens GN=CDKN2C PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 58  LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
           +H AA+   L+ L+T+L +   VN++D      +EGN  LH++    H+++V  +VK   
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIED------NEGNLPLHLAAKEGHLRVVEFLVKHTA 127

Query: 118 DQINARNSKDNTAMDMVKFH 137
             +  RN K +TA D+ + +
Sbjct: 128 SNVGHRNHKGDTACDLARLY 147

Interacts strongly with CDK6, weakly with CDK4. Inhibits cell growth and proliferation with a correlated dependence on endogenous retinoblastoma protein RB.

Homo sapiens (taxid: 9606)

>sp|P97819|PLPL9_MOUSE 85/88 kDa calcium-independent phospholipase A2 OS=Mus musculus GN=Pla2g6 PE=1 SV=3

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 15  VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML 74
            +  EG TPLH    KG+ ++L + +  C   +     + ETA H A + D  +VL+ +L
Sbjct: 147 TENEEGCTPLHLACRKGDSEILVELVQYCHAQMDVTDNKGETAFHYAVQGDNPQVLQ-LL 205

Query: 75  GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           G     N    LN  N++G T LH++      ++VR+++
Sbjct: 206 G----KNASAGLNQVNNQGLTPLHLACKMGKQEMVRVLL 240

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|Q18297|TRPA1_CAEEL Transient receptor potential cation channel subfamily A member 1 homolog OS=Caenorhabditis elegans GN=trpa-1 PE=2 SV=5

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 15/163 (9%)

Query: 2   VLRLI--DFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALH 59
            LR++  D  R +V +  R+  TP+H VA  G ++++ + L     SI QV   +ETALH
Sbjct: 454 TLRIVSEDVRRTMVNMVDRDQNTPMHIVASNGYLEMM-QLLQKHGASITQVNEDEETALH 512

Query: 60  VAAKYDRLEVLETMLGW-LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRD 118
            AA   +   +  +L W +R + M      K++ GN+ LH++    H    ++++    D
Sbjct: 513 RAAIGGQTGAVRQLLEWDIRLLLM------KDEMGNSALHLAARSGHDATTKVLLDNGAD 566

Query: 119 QINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS 161
           +  A+NS   T + +         + E  + +V K    E SS
Sbjct: 567 K-EAKNSYQKTPLQVA----VDSGKLETCQRLVAKGAQIESSS 604

Receptor-activated non-selective cation channel involved in the nose-touch response and foraging behavior. Contributes to the neural responses of sensory neurons to touch, particularly after repeated mechanical stimulation. Has no apparent role in thermosensory or chemosensory behaviors.

Caenorhabditis elegans (taxid: 6239)

>sp|Q495B1|AKD1A_HUMAN Ankyrin repeat and death domain-containing protein 1A OS=Homo sapiens GN=ANKDD1A PE=2 SV=2

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 8/120 (6%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESIL-QVTIRKETALHVAAKYDRLEVLE 71
           +  + ++G+T LH  A+KG+V +L   +    +  L  V     TA H AA++ +L+ L+
Sbjct: 117 IHCESKDGLTLLHCAAQKGHVPVLAFIMEDLEDVALDHVDKLGRTAFHRAAEHGQLDALD 176

Query: 72  TMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
            ++G       D   N K+ EGNT LH++  R H+ +++ +V    D +  +N++  TA+
Sbjct: 177 FLVG----SGCDH--NVKDKEGNTALHLAAGRGHMAVLQRLVDIGLD-LEEQNAEGLTAL 229

Homo sapiens (taxid: 9606)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 30/239 (12%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           +V +L+    NL+ +        LH  A +G+V+++   L+  P+   ++  + +TALH+
Sbjct: 213 VVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHM 272

Query: 61  AAKYDRLEVLETMLGWLRYVNMDDILNWKNDEG-NTLLHISISRSHIQIVRLIVKRVRDQ 119
           A K    EV++ +L      + D  +  + D+  NT LH++  +   +IV L++      
Sbjct: 273 AVKGQSSEVVKLLL------DADPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTN 326

Query: 120 INARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGG---------RE--RSSLATMEIA 168
            N       TA+D+ +  L    E   +K  + ++G          R+  RS++  ++  
Sbjct: 327 ANTLTRDHKTALDIAEG-LPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKND 385

Query: 169 DYLKRGLTWR--------RKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPP 219
            +++   T R         K L   +R  +   +   N++ VVAVL AT  F A  T P
Sbjct: 386 VHIQLEQTKRTNKNVHNISKELRKLHREGI---NNATNSVTVVAVLFATVAFAAIFTVP 441

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
356545491	452	PREDICTED: death-associated protein kina	0.758	0.577	0.366	5e-43
357465949	427	Ankyrin repeat domain-containing protein	0.630	0.508	0.424	7e-43
357517641	450	Ankyrin repeat protein [Medicago truncat	0.700	0.535	0.373	2e-42
356514671	399	PREDICTED: ankyrin-3-like [Glycine max]	0.610	0.526	0.414	2e-42
356514663	377	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.622	0.567	0.393	9e-39
357456647	634	Ankyrin repeat-containing protein [Medic	0.779	0.422	0.359	9e-38
357515201	438	Ankyrin repeat-containing protein [Medic	0.747	0.586	0.341	1e-37
356514711	418	PREDICTED: ankyrin repeat-containing pro	0.773	0.636	0.355	3e-37
356514709	583	PREDICTED: uncharacterized protein LOC10	0.776	0.457	0.358	3e-36
357517511	447	Ankyrin repeat protein [Medicago truncat	0.790	0.608	0.324	8e-36

>gi|356545491|ref|XP_003541175.1| PREDICTED: death-associated protein kinase 1-like [Glycine max]

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 110/300 (36%), Positives = 175/300 (58%), Gaps = 39/300 (13%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           MVLR +D +++LVRV+GREG+TP H+ ++KG +DLL  FL ACP+SI  VT+R ETALH+
Sbjct: 89  MVLRFVDINKDLVRVKGREGLTPFHFASQKGEIDLLANFLLACPDSIEDVTVRCETALHI 148

Query: 61  AAKYDRLEVLETMLGWLRYVNM-------DDILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           A +  + E    ++GWL+             ILNW+N+EGNT+LH+S   +  + +RL+V
Sbjct: 149 ALRSQQYEAFRVLVGWLQRTRQRGATTLEKTILNWRNEEGNTILHVSALMNDSKAIRLLV 208

Query: 114 KRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATME-IADYLK 172
           K   D +NA+N ++ TA+D+            E+K ++ KAG +  SS+       D L+
Sbjct: 209 KTKVD-LNAKNWENLTALDIAA--------NAEVKIVLAKAGAKHGSSITNAPTFPDKLR 259

Query: 173 RGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLW--------G 224
             +T   K+++F  R    IT++ RNA L+VA L+ATAT+Q+AL+PP  ++         
Sbjct: 260 SNITLMEKIIIFILRIRRDITEDQRNAFLIVAALVATATYQSALSPPGGVYQANAGDNNT 319

Query: 225 NRSSDIDSAANVTATSINKNRTVIQEIQLSPLFSLGDYYDQFISGISLFFSLSNILSFST 284
           N +  ++S    TAT  N  ++V+         ++GD+       +S+F +LS ++S  T
Sbjct: 320 NSTPSLNSTVATTATHGNAGKSVM---------TVGDFLT-----LSIFNTLSLLVSIMT 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465949|ref|XP_003603259.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355492307|gb|AES73510.1| Ankyrin repeat domain-containing protein [Medicago truncatula]

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 96/226 (42%), Positives = 142/226 (62%), Gaps = 9/226 (3%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           MV R +D +++LVRV+GREG+TPLH   + GN DL+ KFL  CP  I  VT+R ETALH+
Sbjct: 86  MVCRFVDINKDLVRVKGREGLTPLHIATQTGNFDLVVKFLFVCPGCIEDVTVRSETALHI 145

Query: 61  AAKYDRLEVLETMLGWLR-------YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           A KY +  VLE +LGWLR       +     +LNW+++ GNT+LH+S+  S  Q V L++
Sbjct: 146 AVKYKQFHVLEILLGWLRRTCHRRSHHKEKRVLNWEDEAGNTILHMSVLNSFPQAVGLLI 205

Query: 114 KRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKR 173
               D INA+N  + TA+D+V+  +Q++    E+K M+ KAG     SLA   + + L+ 
Sbjct: 206 DSNID-INAKNLDEQTALDIVE-QIQSQVYSAEMKDMLIKAGALHGFSLAPTPLHEELQS 263

Query: 174 GLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPP 219
            +T+  ++ +   R    I+ + RNALLVVA+L AT+ ++A L PP
Sbjct: 264 KITFNERIAICVTRLRRRISSDTRNALLVVAILFATSAYEATLNPP 309

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517641|ref|XP_003629109.1| Ankyrin repeat protein [Medicago truncatula] gi|355523131|gb|AET03585.1| Ankyrin repeat protein [Medicago truncatula]

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 158/260 (60%), Gaps = 19/260 (7%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           MVLR +D ++ LVR++G+EG+TPLH   + G +DLL  FL  CP SI  VT+R ETALH+
Sbjct: 92  MVLRFVDMNKELVRIKGKEGLTPLHLACQSGEIDLLANFLFVCPNSIEDVTVRGETALHI 151

Query: 61  AAKYDRLEVLETMLGWLRYVNMDD-------ILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           A K +  E L  ++GWL+             +LN+K+++GNT+LHIS   + ++ +RL+V
Sbjct: 152 AVKNEHYESLHVLVGWLKTTRQRGAREFEKLVLNYKDEKGNTVLHISALNNDLKALRLLV 211

Query: 114 KRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATM-EIADYLK 172
           K  +  +NA+NS+++TA+D+            E+K ++  AG +  S +  + ++ D L+
Sbjct: 212 K-TKINLNAKNSENSTALDIAA--------SSEIKGILLSAGAKPSSKVKDVSKLEDKLR 262

Query: 173 RGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLWGNRSSDIDS 232
             +T   K+L++  R    I++E RNA L+VA LIATAT+Q+AL+PP  ++   + D ++
Sbjct: 263 SNVTILDKMLIYILRIRKDISEEQRNAFLIVATLIATATYQSALSPPGGVYQGNAGDYNN 322

Query: 233 AA--NVTATSINKNRTVIQE 250
               N +  S    ++VI E
Sbjct: 323 NVKNNTSLNSKEVGKSVISE 342

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514671|ref|XP_003526027.1| PREDICTED: ankyrin-3-like [Glycine max]

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/227 (41%), Positives = 147/227 (64%), Gaps = 17/227 (7%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           MV RL+D ++ LVR +GREG+TPLH+ ++ G +DLL  FL ACP+SI  VTIR ETALH+
Sbjct: 94  MVHRLVDINKELVRAKGREGLTPLHFASQIGEIDLLANFLLACPDSIEDVTIRGETALHI 153

Query: 61  AAKYDRLEVLETMLGWLRYVNMDD-------ILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           A +Y + E L+ ++GWL+     +       ILNWK++EGNT+LH+S   +  ++++L++
Sbjct: 154 AVRYRQYEALQLLVGWLKGTCQKNAMQIEKTILNWKDEEGNTILHVSALMNDSKVLQLLL 213

Query: 114 KRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATME-IADYLK 172
           K   D +  +N +++TA+D+            E+K+ + +AG +  SS+     +AD L+
Sbjct: 214 KTKVD-LKVKNLENSTALDVAA--------SAEIKNALVRAGAKHGSSVTNAPTLADKLR 264

Query: 173 RGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPP 219
             +T   K+++F  R    IT++ R A LVVA LIATAT+Q+AL+PP
Sbjct: 265 WNITLMGKIIIFVLRIRRDITEDQRQAFLVVAALIATATYQSALSPP 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514663|ref|XP_003526023.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Glycine max]

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 91/231 (39%), Positives = 146/231 (63%), Gaps = 17/231 (7%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           +VLRL+  + +LVR +GR+G TPLH  ++KG +DLL KFL ACP  I  VT++ ETALH+
Sbjct: 113 VVLRLVSINNDLVRAKGRKGRTPLHLASKKGEIDLLTKFLLACPNCIEDVTVKSETALHI 172

Query: 61  AAKYDRLEVLETMLGWLR---YVNMDDI----LNWKNDEGNTLLHISISRSHIQIVRLIV 113
           A +  + E L+ ++GWLR   +    D+    LNW+++EGNT+LHIS SR +      ++
Sbjct: 173 AVRCGQFEALQVLVGWLRRLPHKGARDLERTTLNWEDEEGNTILHIS-SRENNLQALQLL 231

Query: 114 KRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATME-IADYLK 172
            + +  + A+N +++TA+D+V           E+++ + KAG ++ SS+     +AD L+
Sbjct: 232 LKTKVDLKAKNLENSTALDVVT--------SAEIRNALVKAGAKQGSSVTNAPTLADKLR 283

Query: 173 RGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLW 223
             +T   K+ +F  R    IT++ R A L+VA LIATAT+Q+AL+PP  ++
Sbjct: 284 WNITLMGKITIFVLRIRSDITEDQRQAFLIVAALIATATYQSALSPPGGVF 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456647|ref|XP_003598604.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355487652|gb|AES68855.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 167/298 (56%), Gaps = 30/298 (10%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           MV R ++F+++LVRV+GR G+TPLH+ ++ G V+LL  FL ACPESI  +T+R ETALH+
Sbjct: 91  MVTRFVNFNKDLVRVEGRNGITPLHFASQIGEVELLANFLFACPESIEYLTVRFETALHI 150

Query: 61  AAKYDRLEVLETMLGWLRYVNMDD-------ILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           A   ++ E L+ +LGWL+             ILN +++ GNT+ HIS   S  Q ++L++
Sbjct: 151 AVMNEQYEALQVLLGWLKTNKQRGADLLKYKILNQEDENGNTIFHISALYSEPQALQLLI 210

Query: 114 ----------KRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLA 163
                     K+ R  + A+N ++ T++DM         E + + S V    G E ++  
Sbjct: 211 KTFCQKNKFLKKTRINLCAKNLENKTSLDMA-----VTREIKSILSSVGAKPGLEVTNAP 265

Query: 164 TMEIADYLKRGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLW 223
           T+  A  LK   T    + L+       I++E RN  L+VA L+ATATFQ+A++PP  ++
Sbjct: 266 TL--AHKLKSNTTLMSSMFLYIVGLRNDISEEQRNTWLIVATLVATATFQSAMSPPGGVY 323

Query: 224 GNRSSDIDSAANVTAT--SINKNRTVIQEIQLSPLFSLGDYYDQFISGISLFFSLSNI 279
              +S  DS+ N+T+T  +I+   ++      S L   G Y+D F+    L FSLS I
Sbjct: 324 QVNAS--DSSLNITSTNSTISTGWSLWGNTGKSVL--PGAYFDIFVYLNMLSFSLSTI 377

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515201|ref|XP_003627889.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355521911|gb|AET02365.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 176/310 (56%), Gaps = 53/310 (17%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           MV R +D +++LVRV+GREG+TPLH+ ++ G VDLL  FL  CPESI  +T+R+ETALH+
Sbjct: 95  MVYRFVDINKDLVRVKGREGLTPLHFASQNGEVDLLVCFLLLCPESIEYLTVRQETALHI 154

Query: 61  AAKYDRLEVLETMLGWLR------YVNMD-DILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           A K ++ E L+ ++GWL+        N++ +ILN ++++GNT+LHIS   S +Q ++L+V
Sbjct: 155 AVKNEQFEALQVLVGWLKENCKRGAENLENNILNQRDEDGNTILHISALSSELQALQLLV 214

Query: 114 KRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKR 173
                 +  +N ++ TA+D+      + P   E+KS++   G +      ++E+AD   R
Sbjct: 215 S-TGINLKEKNLENKTALDIT-----STP---EMKSILLSVGAKH-----SIEVADAPTR 260

Query: 174 G---------LTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLW- 223
                      T   K++    R+   +T+E RN  L+VA LIATA +Q+ L+PP  ++ 
Sbjct: 261 AHRLRLMATTKTMSNKLVSEITRTRSDMTEEQRNIWLIVATLIATAMYQSVLSPPGGVYQ 320

Query: 224 ---GNRSSDIDSAANVTATSINKNRTVIQEIQLSPLFSLGDYYDQFISGISLFFSLSNIL 280
              G+ + +I S+ +  +T  N  R+V+           G  + Q        FS+ N+ 
Sbjct: 321 ISAGDNNLNITSSNSTISTPKNVGRSVLS----------GYLFSQ--------FSICNLF 362

Query: 281 SF-STAMKVI 289
           SF S+A+ +I
Sbjct: 363 SFLSSAITII 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514711|ref|XP_003526047.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/321 (35%), Positives = 171/321 (53%), Gaps = 55/321 (17%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           MVLRL++ +++LVRV+GREG TPLH  +++   +LL KFL ACP+SI  VT R ETALH+
Sbjct: 87  MVLRLVEMNKDLVRVKGREGFTPLHLASQENKTELLHKFLKACPDSIEDVTARSETALHI 146

Query: 61  AAKYDRLEVLETMLGWLRYVNMDD-------ILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           A K+   E+L+ +  WL+  +  D       +LNWK+ +GNT++H++    HI+ V L++
Sbjct: 147 AVKHGHYEILQVLFRWLKRNSRKDSLKFIRTMLNWKDQKGNTVVHVAALNDHIEAVSLLL 206

Query: 114 KRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKR 173
             V   ++A+NS+  TA D+           + +KS++ K  G             + + 
Sbjct: 207 TMV--DLDAKNSEGKTASDIAS--------SDHMKSILIKDLG-------------FFES 243

Query: 174 GLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLWGNRSSDIDSA 233
               R K   FF R    +T+E RNA LVVA LIATAT+QAAL+PP  L+ +     ++ 
Sbjct: 244 LALLRNKFRNFFLRFRRYMTEEERNAYLVVAALIATATYQAALSPPGGLYPSDVGTNNNT 303

Query: 234 ANVTA--------TSINKNRTVIQEIQLSPLFSLGDYYDQFIS---GISLFFSLSNI--- 279
           ++V A        +SI K+   I       LFS+ +    F+S    I L   ++N+   
Sbjct: 304 SHVVASTHSINDKSSIPKDGNSIMSATEFSLFSVANTC-SFMSSTFAIILLLPMTNVMWI 362

Query: 280 ----------LSFSTAMKVIS 290
                     LSF  AM VIS
Sbjct: 363 LLYSPPFFLQLSFFIAMMVIS 383

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514709|ref|XP_003526046.1| PREDICTED: uncharacterized protein LOC100776039 [Glycine max]

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/321 (35%), Positives = 167/321 (52%), Gaps = 54/321 (16%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           MVLRL++ +++LVRV+GREG T LH  +++   +LL KFL ACP+SI  VT R ETALH+
Sbjct: 87  MVLRLVEMNKDLVRVKGREGFTALHLASQENKTELLDKFLKACPDSIEDVTARSETALHI 146

Query: 61  AAKYDRLEVLETMLGWLRYVNMDD-------ILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           A K+   E L+ +  WL   +  D       +L+WK+ +GNT+LH++    HI+ V L++
Sbjct: 147 AVKHGHYETLQVLFRWLMRNSRKDSQKFIRTMLDWKDQKGNTVLHVAALYDHIEAVSLLL 206

Query: 114 KRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADYLKR 173
             V   ++A+NS+  TA D+           + +KS++ K  G             + + 
Sbjct: 207 TMV--DLDAKNSEGKTASDIAS--------SDHMKSILIKDLG-------------FFES 243

Query: 174 GLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLWGNRSSDIDSA 233
               R K   FF R    +T+E RNA LVVA LIATAT+QAAL+PP  L+ +     ++ 
Sbjct: 244 LALLRNKFRNFFLRFRRYMTEEERNAYLVVAALIATATYQAALSPPGGLYPSDVGTNNNT 303

Query: 234 ANVTA--------TSINKNRTVIQEIQLSPLFSLGDYYDQFIS--GISLFFSLSNIL--- 280
           ++V A        +SI K+   I       LFS+ +      S  GI L    +NIL   
Sbjct: 304 SHVVASTHSINDKSSIPKDGNSIMSAGEFNLFSIANMSSFMASTFGIILLLPRTNILMWC 363

Query: 281 -----------SFSTAMKVIS 290
                      SF TAM VIS
Sbjct: 364 LLYSPPFFLQISFCTAMMVIS 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517511|ref|XP_003629044.1| Ankyrin repeat protein [Medicago truncatula] gi|355523066|gb|AET03520.1| Ankyrin repeat protein [Medicago truncatula]

 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 165/305 (54%), Gaps = 33/305 (10%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           MV   +  +++LVRV+GREG+TPLH+  + G V +L  FL  CPESI  +T+R+ETALH+
Sbjct: 91  MVYHFVSINKDLVRVRGREGITPLHFACQNGEVQMLAYFLRLCPESIEYLTVRRETALHI 150

Query: 61  AAKYDRLEVLETMLGWLRYVNM-------DDILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           + K ++ E L+ ++ WL+           + ILN ++   NT+LHIS   S  Q + L+V
Sbjct: 151 SVKNEQYEALQVLVSWLKKNTQRGAQKLENKILNQRDKASNTILHISALSSDPQALLLLV 210

Query: 114 KRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIADY-LK 172
               D + A+NS++ TA+D     + + P   E+KS++   G +  S +      D+ ++
Sbjct: 211 STGID-LKAKNSENKTALD-----IASTP---EIKSILLSVGTKPSSEVTDYPTCDHRIR 261

Query: 173 RGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLWGNRSSDIDS 232
             +T    V ++  R    I++E RN  L+VA L+ATA +Q+ L+PP  ++  + S  D+
Sbjct: 262 SKITTIGAVTIYINRIRGDISEEQRNTWLIVATLVATAIYQSGLSPPGGIY--QVSAGDT 319

Query: 233 AANVTATSINKNRTVIQEIQLSPLFSLGDYYDQFISGISLF-FSLSNILSFSTAMKVISH 291
             N+T+++               + + G+     +SG   F F   N+ SFS ++  I  
Sbjct: 320 NTNITSSNFT-------------ISAPGNAGKSVLSGYEFFLFLFINMYSFSVSILAIFI 366

Query: 292 HLPYG 296
            LPYG
Sbjct: 367 MLPYG 371

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.613	0.495	0.345	4.4e-29
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.659	0.510	0.310	1.2e-28
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.625	0.498	0.314	1.2e-26
TAIR|locus:2180882	457	AT5G15500 [Arabidopsis thalian	0.622	0.468	0.311	3.1e-26
TAIR|locus:2012557	436	AT1G14500 "AT1G14500" [Arabido	0.613	0.483	0.315	7.6e-24
TAIR|locus:2123406	406	AT4G11000 "AT4G11000" [Arabido	0.563	0.477	0.304	3.3e-22
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.671	0.522	0.251	5.6e-21
TAIR|locus:2012532	441	AT1G14480 "AT1G14480" [Arabido	0.683	0.532	0.278	1.6e-20
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.450	0.228	0.275	1.8e-09
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.357	0.229	0.299	2.1e-09

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 77/223 (34%), Positives = 132/223 (59%)

Query:     1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
             + L L+  D +LVR++GR G+TPLH VA+KG+VDLL  FL ACPESI  V +  ET LH+
Sbjct:    86 LALELVKVDPSLVRIRGRGGMTPLHLVAKKGDVDLLTDFLLACPESIKDVNVNGETILHI 145

Query:    61 AAKYDRLEVLETMLGWLRYV-NMDDI----LNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
                 D+ E L+ + GW++ + + DD+    LN ++  GNT+LH++   ++ ++V+ +VK 
Sbjct:   146 TIMNDKYEQLKVLTGWMQKMRDSDDVFIDVLNRRDRGGNTVLHLAAYENNDKVVKQLVKC 205

Query:   116 VRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATM-EIADYLKRG 174
             +    N +N    TA+D+++   +     +E++ +++ +GG+   SL+ + E   +L+  
Sbjct:   206 LSLDRNIQNKSGMTALDVLR--ARGSHMNKEIEEIIQMSGGKTGGSLSGIQEWYIFLREP 263

Query:   175 LTWRR--KVLLFFYRSSLCITDENRNXXXXXXXXXXTATFQAA 215
             +T++   K  +  YRS   I+D +RN          +ATFQ A
Sbjct:   264 VTFKEHCKTRIARYRSR--ISDGSRNALLVIAALIISATFQTA 304

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 74/238 (31%), Positives = 128/238 (53%)

Query:     1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
             +VL L+  D +LVR++GREG+TP H V  +G  DL+ +FL ACP  I    +  ETALH+
Sbjct:    86 LVLSLLKVDSDLVRLRGREGMTPFHQVVRRGETDLMTEFLLACPGCIKDANVNGETALHI 145

Query:    61 AAKYDRLEVLETMLGWLRYVNMDD-------ILNWKNDEGNTLLHISISRSHIQIVRLIV 113
             A   DR E LE +LGW++ +   D        LN ++ +GNT LHI+  ++  + V+++V
Sbjct:   146 AVSNDRYEELEVLLGWVQRLRQTDAESLEMQFLNKRDQDGNTALHIAAYQNRFKAVKILV 205

Query:   114 KRVRDQINARNSKDNTAMDMVKFHLQTKPEFEE-LKSMVRKAGGRERSSLA-TMEIADYL 171
             K      N  N    TA+D++  H Q        +++++RK GG+  +SL  + ++++ L
Sbjct:   206 KCSAVNRNIHNRTGLTALDIL--HNQRDHHANSNIENIIRKWGGKSGNSLPKSKKVSEIL 263

Query:   172 KRGLTWRRKVLLFFYRSSLCITDENRNXXXXXXXXXXTATFQAALTPPQDLWGNRSSD 229
             +  +++   +     R     ++  R+          TAT+Q AL PP  ++   +++
Sbjct:   264 RSPISFTEHLFTQTARYRNQTSEGTRSALLVIAALIITATYQTALQPPGGVYQENAAE 321

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 73/232 (31%), Positives = 127/232 (54%)

Query:     1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
             + L L+  + +LV V GR+G+TPLH V +KG+ +LL +FL ACPESI    +  ETALH+
Sbjct:    86 LALELVKINPDLVLVAGRKGMTPLHLVVKKGDANLLTEFLLACPESIKDTNVNGETALHI 145

Query:    61 AAKYDRLEVLETMLGWLRYVNMDD-------ILNWKNDEGNTLLHISISRSHIQIVRLIV 113
             A   DR E L+ + GW+  ++  D       +LN ++ +GNT+LH++  +++ +  + ++
Sbjct:   146 AVMNDRYEELKVLTGWIHRLHKSDAASTEIHVLNKRDRDGNTILHLAAYKNNHKAFKELL 205

Query:   114 KRVRDQINARNSKDNTAMDMVKF---HLQTKPEFEELKSMVRKAGGRERSSLATMEIAD- 169
             K +    + +N    TA+D+++    H+  K E      ++R +GG+   SL+ ++ A  
Sbjct:   206 KCISLNRDIQNKGGMTALDILRTNGSHMNIKTE-----KIIRHSGGKSGVSLSKVKTASV 260

Query:   170 YLKRGLTWRRKVLLFFYRSSLCITDENRNXXXXXXXXXXTATFQAALTPPQD 221
             +L+  +T+         R    ++D  RN          TAT+Q A+ P QD
Sbjct:   261 FLRSPITFVEYCSTTMTRYKNRMSDGTRNALLVITALIITATYQTAVQP-QD 311

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180882 AT5G15500 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 3.1e-26, P = 3.1e-26
 Identities = 72/231 (31%), Positives = 118/231 (51%)

Query:     1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
             +VL ++  D +LVR++GR G+TPL     +  +DL+ +F   CPESI+   +  E ALH+
Sbjct:    87 LVLEVVKVDPSLVRIKGRHGMTPLLVAVSRKKIDLMSEFFLGCPESIVDANVNGENALHI 146

Query:    61 AAK-YDR---LEVLETMLGW-LRYVNMDD------ILNWKNDEGNTLLHISISRSHIQIV 109
             A   YD+   L VL+ ++GW LR    D       ++N ++ +GNT LH++    + Q +
Sbjct:   147 AVNNYDQREGLSVLKVLMGWILRLCQKDAEWIETRVINRRDKDGNTPLHLAAYEINRQAM 206

Query:   110 RLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEI-A 168
             +L+++  +  +N  N    T  D+   H        E++ MV++ GG+   SL  ++  +
Sbjct:   207 KLLLESSKINVNIENKNGLTVFDIAVLHNN-----REIERMVKRHGGKRSVSLVKIKTTS 261

Query:   169 DYLKRGLTWRRKVLLFFYRSSLCITDENRNXXXXXXXXXXTATFQAALTPP 219
             D L   L+WR        R    I++E RN          TAT+Q  L PP
Sbjct:   262 DILASQLSWRESRRTKKIRFYSWISEERRNALLVVATLIVTATYQTVLQPP 312

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012557 AT1G14500 "AT1G14500" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 7.6e-24, P = 7.6e-24
 Identities = 69/219 (31%), Positives = 119/219 (54%)

Query:     9 DRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLE 68
             D  LVRV+GREG+TP H +A +G+V+L+ + L  CP  I  V++    ALH+A   DR E
Sbjct:    94 DPGLVRVKGREGITPFHLLAIRGDVNLVAECLKYCPVCIQDVSVNGHNALHLAVMNDRFE 153

Query:    69 VLETMLGWLRYVNM-------DDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQIN 121
             +L+ + GWL+ ++         D LN K+   NT LH++  +   Q V+L+++    ++N
Sbjct:   154 ILQVLTGWLQRMSQKDSASTESDFLNRKDLAHNTPLHLAAYKEDHQAVKLLLQCQLVKLN 213

Query:   122 ARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEI-ADYLKRGLTWRRK 180
               N+   T +D+++ + Q++   ++L+ +V K G +E +SL  +E  +D  K  +T+   
Sbjct:   214 EVNADGLTFLDILRNNGQSRDLDKDLEQVVVKTGCKEAASLPQLEKPSDQFKSPVTFLAH 273

Query:   181 VLLFFYRSSLCITDENRNXXXXXXXXXXTATFQAALTPP 219
               +   R     ++E R           T+T+Q AL PP
Sbjct:   274 CSIGIRRLRSDTSEEGRAVFLIICTLILTSTYQTALQPP 312

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2123406 AT4G11000 "AT4G11000" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 3.3e-22, P = 3.3e-22
 Identities = 64/210 (30%), Positives = 110/210 (52%)

Query:    22 TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN 81
             TPLH  AEKG      + +   P   L++ +   + LH+A + + ++ +  +LGW++  N
Sbjct:    76 TPLHIAAEKGQTHFAMELMTLKPSLALKLNVSGFSPLHLALQNNHIQTV--LLGWIKRAN 133

Query:    82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTK 141
               +IL+WK+++GNT+ HI+   +  ++++L+ K V+  + A+N    TAMD+++ H    
Sbjct:   134 RKEILDWKDEDGNTVFHIAALINQTEVMKLLRKTVK--VKAKNLDGKTAMDILQTH--QS 189

Query:   142 PEFEELKSMVRKAGGRERSSL-ATMEIADYLKRGLTWRRKVLLFFYRSSLCITDEN---- 196
             P F   K ++R A  +ER    +T  +A YL R L++  K       S+L +T +     
Sbjct:   190 PCFPVAKKLLRSA--KERPFCGSTTTLAGYLSRNLSFIEKRNSLLGLSNLSMTKDRSINA 247

Query:   197 ---RNXXXXXXXXXXTATFQAALTPPQDLW 223
                RN          TAT+QA L+PP   W
Sbjct:   248 SDPRNAILVVAILIVTATYQAGLSPPGGFW 277

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 5.6e-21, P = 5.6e-21
 Identities = 62/247 (25%), Positives = 124/247 (50%)

Query:     9 DRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLE 68
             ++ L R++ R+G TPLH    +G +D++ + +A+C + +   T++ +TALH+A  +  +E
Sbjct:    70 EKKLCRLKDRDGKTPLHVATMRGKIDVIREIVASCVDCLEDETVQGQTALHLAVLHLEIE 129

Query:    69 VLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQ-----INAR 123
              +  ++  +   N  D+LN K+++GNT LH++  R + Q++ ++V+ + ++     +NA 
Sbjct:   130 AVIAIVELITETNRFDVLNKKDEQGNTALHLATWRKNRQVIEVLVQAIPEESRSFEVNAM 189

Query:   124 NSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS--------SLATMEIADYLKRGL 175
             N    +AMD++        + E  + ++     R R         + +T    +   +  
Sbjct:   190 NKMGLSAMDLLVMFPSEAGDREIYEKLIEAGAQRGRDIGTTNVERTTSTSTCQERTMKSQ 249

Query:   176 TWRRKVLLFFYRSSLCITDENRNXXXXXXXXXXTATFQAALTPPQDLWGNRSSDIDSAAN 235
             + +  V  F ++       E R+          TATFQA+LTPP   W  + S I + + 
Sbjct:   250 SHKELVKYFTFKKHRDSPSEARSALLVVASLVATATFQASLTPPGGTW--QDSSIPAVSQ 307

Query:   236 VTATSIN 242
              T T++N
Sbjct:   308 NT-TNVN 313

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2012532 AT1G14480 "AT1G14480" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 68/244 (27%), Positives = 123/244 (50%)

Query:     2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVA 61
             V  ++  D  L RV+GR GVTP H +  +G+ DL+ + L   PE I  V + ++ ALH+A
Sbjct:    87 VSHMLWHDGGLSRVKGRNGVTPFHLLVIRGDDDLVAECLITSPECIEDVNVDRQNALHLA 146

Query:    62 AKYDRLEVLETMLGWLRYVNMDD-------ILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
                DR EVL+ + GW++ ++  D       +LN ++ + NT LH++  ++  Q ++L++K
Sbjct:   147 VMNDRFEVLQVLTGWIQRMSQKDAYYIENRVLNKRDFDFNTALHLAAYKNDQQALKLLLK 206

Query:   115 RVRDQINARNSKDNTAMDMVKFHLQTKPEFE-ELKSMVRKAGGRERSSLATM-EIADYLK 172
                 + N  N  D T +D+++   +       +L+  V K G  E +S+    E +D LK
Sbjct:   207 CRLVEPNLVNIDDLTFVDILRTQGENAGGGNLDLEQAVIKTGCVEAASMPKFKEESDLLK 266

Query:   173 RGLTWRRKVLLFFYRSSLCITDENRNXXXXXXXXXXTATFQAALTPPQDLWGNRSSDIDS 232
               + +         R     +D++R           TAT+Q AL PP  +  + +++ ++
Sbjct:   267 SPINFMTYYSTSMKRMKSSTSDQDRGAFLIVCTLIITATYQMALQPPGGVHQSENANANA 326

Query:   233 AANV 236
              + V
Sbjct:   327 GSVV 330

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 43/156 (27%), Positives = 78/156 (50%)

Query:     5 LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKY 64
             L+D   + V V   +G  P+H   + G V +L   L  CP+++  +    +  LHVAAK 
Sbjct:   335 LLDKALDSVYVSDDDGSFPIHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKN 394

Query:    65 DRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN 124
              ++EVL+ +L   +  N + ++N ++  GNT LH++    H ++V ++    R  +   N
Sbjct:   395 GKIEVLKFILRCCKDKNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLN 454

Query:   125 SKDNTAMDMVKFHLQTKPEF-EELKSMVRKAGGRER 159
                 TA+D+ + ++ +   F E L  M   + G  R
Sbjct:   455 HDGVTALDIAEKNMDSSYTFFERLTWMALISAGAPR 490

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 38/127 (29%), Positives = 67/127 (52%)

Query:     9 DRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIR-KETALHVAAKYDRL 67
             D  L  +  ++G TPLH     G+V+ L  F+   P S   VT++  ET  H+AA++ ++
Sbjct:    98 DLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINKAPLSFDSVTLQTSETVFHLAARHKKM 157

Query:    68 EVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKD 127
             E    M    +  N+  +L   + EGNT+LH + S   + +V  IV  ++ ++  +N K 
Sbjct:   158 EAFIFMA---KNANLRRLLYELDGEGNTVLHAAASVGFLSLVSYIVHEIKIEVTTQNDKG 214

Query:   128 NTAMDMV 134
               A+D++
Sbjct:   215 FEAVDLL 221

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	344
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-11
pfam13962	114	pfam13962, PGG, Domain of unknown function	6e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-04
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	8e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 8/116 (6%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWL 77
            +G TPLH  A  G+++++   L      +        T LH+AAK   LE+++ +L   
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGA-DVNAKDNDGRTPLHLAAKNGHLEIVKLLL--- 60

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
                   +N ++ +GNT LH++    ++ +V+L++K   D +NAR+    T + +
Sbjct: 61  ---EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 8/113 (7%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           +V  L++   + V  +  +G TPLH  A+ G+++++ K L      +        T LH+
Sbjct: 22  VVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIV-KLLLEKGADVNARDKDGNTPLHL 79

Query: 61  AAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           AA+   L+V++ +L     VN       ++ +G T LH++    H+++V+L++
Sbjct: 80  AARNGNLDVVKLLLKHGADVNA------RDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 10/101 (9%)

Query: 24  LHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMD 83
           LH  A+ GN++L  K L      +       +TALH+AA+   LE+++ +L         
Sbjct: 1   LHLAAKNGNLEL-VKLLLEKGADVN--LGDTDTALHLAARNGNLEIVKLLL------EHG 51

Query: 84  DILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN 124
             +N K+ +GNT LH++    +++IV+L+++   D IN ++
Sbjct: 52  ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD-INLKD 91

Length = 91

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 56.0 bits (136), Expect = 6e-10
 Identities = 33/129 (25%), Positives = 47/129 (36%), Gaps = 41/129 (31%)

Query: 194 DENRNALLVVAVLIATATFQAALTPPQDLWGNRSSDIDSAANVTATSINKNRTVIQEIQL 253
           ++ RN+LLVVA LIAT TF A  TPP   W       D   +   T I            
Sbjct: 5   EKTRNSLLVVATLIATVTFAAGFTPPGGYWQ------DDGGHHAGTPI------------ 46

Query: 254 SPLFSLGDYYDQFISGISLFFSLSNILSFSTAMKVISHHLPYGFAVTLRLLYMQLDFSK- 312
                L     +F       F +SN ++F  ++              + LLY+   FS+ 
Sbjct: 47  -----LAGKPRRFK-----AFFVSNTIAFVASL-----------VAVILLLYIVPSFSRR 85

Query: 313 -IRFRRSIW 320
             R    + 
Sbjct: 86  LPRLLALLT 94

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 50.6 bits (120), Expect = 2e-07
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 9   DRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLE 68
               +  +  +G  PLH  A KG+  ++ K L A    +       +T LH+AA      
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIV-KLLLASGADVNAKDADGDTPLHLAALNGNPP 120

Query: 69  --VLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSK 126
              +E     L      D+ N ++++GNT LH +       IV L+++   D  N+RNS 
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD-PNSRNSY 179

Query: 127 DNTAMD 132
             TA+D
Sbjct: 180 GVTALD 185

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 1  MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
          +V  L++       V   +  T LH  A  GN++ + K L      +        TALH+
Sbjct: 12 LVKLLLE---KGADVNLGDTDTALHLAARNGNLE-IVKLLLEHGADVNAKDKDGNTALHL 67

Query: 61 AAKYDRLEVLETML 74
          AA+   LE+++ +L
Sbjct: 68 AARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.6 bits (101), Expect = 6e-06
 Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 6/58 (10%)

Query: 56  TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIV 113
           TALH AA   RLE+++ +L           +N  +++GNT LHI+    ++++++L++
Sbjct: 3   TALHKAAISGRLELVKYLL------EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML 74
          G T LH  A  G ++L+ K+L      I +      TALH+AA+   LEVL+ +L
Sbjct: 1  GRTALHKAAISGRLELV-KYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 12/43 (27%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 89  KNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
           ++++G T LH++ S  H+++V+L+++   D +NA+++   T +
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPL 44

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 81  NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMV 134
           +    LN  +  GNT LH++     +++V+ ++K   D +N R+S   TA+D+ 
Sbjct: 4   HGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD-LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 9/96 (9%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
           G + L+Y     NV L+C  L A     L+  +  E  LH AA  +  ++++ +L    +
Sbjct: 30  GHSALYYAIADNNVRLVCTLLNA---GALKNLLENEFPLHQAATLEDTKIVKILL----F 82

Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
             MDD  +  +D+GNT L+ ++   ++Q V+L VK+
Sbjct: 83  SGMDD--SQFDDKGNTALYYAVDSGNMQTVKLFVKK 116

Length = 284

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 5  LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVA 61
          L++     +      G TPLH  A+ G ++L+   L      +        TAL +A
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.95
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.95
PHA02791	284	ankyrin-like protein; Provisional	99.91
PHA02875	413	ankyrin repeat protein; Provisional	99.89
PHA02791	284	ankyrin-like protein; Provisional	99.89
PHA02875	413	ankyrin repeat protein; Provisional	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.88
KOG0510	929	consensus Ankyrin repeat protein [General function	99.87
PHA02878	477	ankyrin repeat protein; Provisional	99.87
PHA02874	434	ankyrin repeat protein; Provisional	99.87
PHA02878	477	ankyrin repeat protein; Provisional	99.87
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.87
PHA02798	489	ankyrin-like protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.87
PHA02946	446	ankyin-like protein; Provisional	99.87
PHA02874	434	ankyrin repeat protein; Provisional	99.86
PHA02859	209	ankyrin repeat protein; Provisional	99.86
PHA03100	480	ankyrin repeat protein; Provisional	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.85
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.85
PHA03095	471	ankyrin-like protein; Provisional	99.85
PHA02989	494	ankyrin repeat protein; Provisional	99.85
PHA03100	480	ankyrin repeat protein; Provisional	99.85
PHA03095	471	ankyrin-like protein; Provisional	99.84
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.83
PHA02859	209	ankyrin repeat protein; Provisional	99.83
PHA02795	437	ankyrin-like protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
PHA02876	682	ankyrin repeat protein; Provisional	99.81
PHA02989	494	ankyrin repeat protein; Provisional	99.81
PHA02798	489	ankyrin-like protein; Provisional	99.81
KOG0514	452	consensus Ankyrin repeat protein [General function	99.81
PHA02876	682	ankyrin repeat protein; Provisional	99.81
KOG0508	615	consensus Ankyrin repeat protein [General function	99.81
KOG0508	615	consensus Ankyrin repeat protein [General function	99.8
PHA02946	446	ankyin-like protein; Provisional	99.8
KOG0510	929	consensus Ankyrin repeat protein [General function	99.8
PHA02795	437	ankyrin-like protein; Provisional	99.78
PHA02730	672	ankyrin-like protein; Provisional	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.77
PHA02917	661	ankyrin-like protein; Provisional	99.77
PHA02917	661	ankyrin-like protein; Provisional	99.77
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.77
PHA02743	166	Viral ankyrin protein; Provisional	99.76
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.76
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.75
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.74
PHA02730	672	ankyrin-like protein; Provisional	99.74
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.72
PF13962	113	PGG: Domain of unknown function	99.71
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.71
PHA02884	300	ankyrin repeat protein; Provisional	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.68
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.67
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.65
PHA02741	169	hypothetical protein; Provisional	99.65
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.65
PHA02736	154	Viral ankyrin protein; Provisional	99.64
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.64
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.63
PHA02792	631	ankyrin-like protein; Provisional	99.63
PHA02792	631	ankyrin-like protein; Provisional	99.63
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.62
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.61
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.58
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.55
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.54
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.51
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.41
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.39
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.38
KOG0514	452	consensus Ankyrin repeat protein [General function	99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.37
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.36
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.36
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.33
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.33
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.3
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.3
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.18
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.17
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.01
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.92
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.81
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.8
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.72
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.66
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.64
PF13606	30	Ank_3: Ankyrin repeat	98.64
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.6
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.57
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.52
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.48
PF13606	30	Ank_3: Ankyrin repeat	98.46
KOG0522	560	consensus Ankyrin repeat protein [General function	98.44
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.43
KOG0522	560	consensus Ankyrin repeat protein [General function	98.39
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.32
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.28
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.28
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.11
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.0
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.92
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.69
KOG2384	223	consensus Major histocompatibility complex protein	97.68
KOG2384	223	consensus Major histocompatibility complex protein	97.66
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.61
KOG0511	516	consensus Ankyrin repeat protein [General function	97.56
KOG2505	591	consensus Ankyrin repeat protein [General function	97.32
KOG0511	516	consensus Ankyrin repeat protein [General function	97.27
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.61
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.12
KOG2505	591	consensus Ankyrin repeat protein [General function	93.77
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.3
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	89.73
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.16

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=9.9e-28  Score=195.67  Aligned_cols=151  Identities=20%  Similarity=0.264  Sum_probs=116.6

Q ss_pred             HHHHHhcCCcccccc-CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            2 VLRLIDFDRNLVRVQ-GREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         2 v~~LL~~~~~~~~~~-d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      |+++++.++..++.+ |.+|+|||||||+.|+.+++..|+...+..++..|..||||||+|+..|+.++|+.|+.+    
T Consensus        19 veel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r----   94 (226)
T KOG4412|consen   19 VEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNR----   94 (226)
T ss_pred             HHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcC----
Confidence            467777777334444 448888888888888888887777766667777788888888888888888888888874    


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                       .+.++|..++.|.|+||+|+.+|..+++++|+++| +.++.+|..|+||||-|+     ..|..+++++|+..|+..+.
T Consensus        95 -~~advna~tn~G~T~LHyAagK~r~eIaqlLle~g-a~i~~kD~~~qtplHRAA-----avGklkvie~Li~~~a~~n~  167 (226)
T KOG4412|consen   95 -SGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKG-ALIRIKDKQGQTPLHRAA-----AVGKLKVIEYLISQGAPLNT  167 (226)
T ss_pred             -CCCCcceecCCCcceehhhhcCChhhHHHHHHhcC-CCCcccccccCchhHHHH-----hccchhhHHHHHhcCCCCCc
Confidence             24557778888888888888888888888888888 888888888888888888     77788888888888877766


Q ss_pred             CCC
Q 043149          161 SLA  163 (344)
Q Consensus       161 ~~~  163 (344)
                      ...
T Consensus       168 qDk  170 (226)
T KOG4412|consen  168 QDK  170 (226)
T ss_pred             ccc
Confidence            443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=9.3e-28  Score=195.85  Aligned_cols=150  Identities=20%  Similarity=0.288  Sum_probs=137.2

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      ||..||.+-.-.++.+|..||||||+||..|+.|+|+.|+.+.+.+++..++.|+|+||+|+..|+.+|+++|+++|   
T Consensus        53 iv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~g---  129 (226)
T KOG4412|consen   53 IVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKG---  129 (226)
T ss_pred             HHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcC---
Confidence            35667766566678889999999999999999999999999988999999999999999999999999999999965   


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                         +.++.+|..|.||||-|+..|..+++++|+..+ +.+|..|.+|+||||.|.     -.++.+...+|+++||+...
T Consensus       130 ---a~i~~kD~~~qtplHRAAavGklkvie~Li~~~-a~~n~qDk~G~TpL~~al-----~e~~~d~a~lLV~~gAd~~~  200 (226)
T KOG4412|consen  130 ---ALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG-APLNTQDKYGFTPLHHAL-----AEGHPDVAVLLVRAGADTDR  200 (226)
T ss_pred             ---CCCcccccccCchhHHHHhccchhhHHHHHhcC-CCCCcccccCccHHHHHH-----hccCchHHHHHHHhccceee
Confidence               457889999999999999999999999999999 999999999999999996     56688999999999999887


Q ss_pred             CC
Q 043149          161 SL  162 (344)
Q Consensus       161 ~~  162 (344)
                      ..
T Consensus       201 ed  202 (226)
T KOG4412|consen  201 ED  202 (226)
T ss_pred             cc
Confidence            43

>PHA02791 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=191.39  Aligned_cols=144  Identities=16%  Similarity=0.111  Sum_probs=104.6

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCC-hHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE-TALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~-t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      |+.|++.+.+ ++.+|..|+||||+|+..|+.++++.|+.. +..++..+..|+ ||||+|+..|+.+++++|++++.. 
T Consensus        77 V~lLL~~Gad-vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~-gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~-  153 (284)
T PHA02791         77 VKILLFSGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-  153 (284)
T ss_pred             HHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc-
Confidence            4555655544 666677777777777777777777666654 455566666653 677777777777777777764321 


Q ss_pred             CccccccccC-CCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCH-HHHHhhhcCCCccHHHHHHHHHHcCCCC
Q 043149           81 NMDDILNWKN-DEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA-MDMVKFHLQTKPEFEELKSMVRKAGGRE  158 (344)
Q Consensus        81 ~~~~~ln~~d-~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tp-l~~a~~~~~~~~~~~~i~~~L~~~ga~~  158 (344)
                             ..| ..|+||||+|+..|+.+++++|+++| +++|.+|..|.|| ||+|+     ..++.+++++|+++|+++
T Consensus       154 -------~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~g-Ad~n~~d~~g~t~~L~~Aa-----~~~~~e~v~lLl~~Ga~i  220 (284)
T PHA02791        154 -------TFDLAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAI-----DNKDLEMLQALFKYDINI  220 (284)
T ss_pred             -------ccccccCccHHHHHHHcCCHHHHHHHHHCC-CCCCcccCCCCChHHHHHH-----HcCCHHHHHHHHHCCCCC
Confidence                   123 24788888888888888888888888 8888888888876 88888     888888888888888888


Q ss_pred             CCC
Q 043149          159 RSS  161 (344)
Q Consensus       159 ~~~  161 (344)
                      +..
T Consensus       221 n~~  223 (284)
T PHA02791        221 YSV  223 (284)
T ss_pred             ccC
Confidence            773

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3.1e-22  Score=193.27  Aligned_cols=132  Identities=14%  Similarity=0.143  Sum_probs=84.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcH
Q 043149           17 GREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTL   96 (344)
Q Consensus        17 d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~Tp   96 (344)
                      +.+|.||||.|+..|+.++++.|++.+....+..+.+|+||||+|+..|+.+++++|++.|++      ++.+|.+|.||
T Consensus        65 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad------~~~~~~~g~tp  138 (413)
T PHA02875         65 YPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD------PDIPNTDKFSP  138 (413)
T ss_pred             CCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC------CCCCCCCCCCH
Confidence            333344444444444444443333332222223344566666666666666666666664433      55677778888


Q ss_pred             HHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           97 LHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        97 LH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      ||+|+..|+.+++++|++++ ++++.+|..|.||||+|+     ..++.+++++|+++|++++.
T Consensus       139 Lh~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~TpL~~A~-----~~g~~eiv~~Ll~~ga~~n~  196 (413)
T PHA02875        139 LHLAVMMGDIKGIELLIDHK-ACLDIEDCCGCTPLIIAM-----AKGDIAICKMLLDSGANIDY  196 (413)
T ss_pred             HHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHhCCCCCCc
Confidence            88888888888888888777 777778888888888887     67777888888888877765

>PHA02791 ankyrin-like protein; Provisional

Probab=99.89  E-value=3.9e-22  Score=181.76  Aligned_cols=127  Identities=21%  Similarity=0.176  Sum_probs=75.0

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCC
Q 043149           15 VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGN   94 (344)
Q Consensus        15 ~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~   94 (344)
                      .+|.+|+||||+|+..|+.++++.|+.. +...+..  +|+||||+|+..|+.+++++|++.|.+      ++.+|.+|+
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gad------vn~~d~~G~   95 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQAATLEDTKIVKILLFSGMD------DSQFDDKGN   95 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHC-cCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHCCCC------CCCCCCCCC
Confidence            4566666666666666666666655554 3333332  356666666666666666666664332      445566666


Q ss_pred             cHHHHHHHCCcHHHHHHHHhccCcccccccCCCC-CHHHHHhhhcCCCccHHHHHHHHHHcCC
Q 043149           95 TLLHISISRSHIQIVRLIVKRVRDQINARNSKDN-TAMDMVKFHLQTKPEFEELKSMVRKAGG  156 (344)
Q Consensus        95 TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~-Tpl~~a~~~~~~~~~~~~i~~~L~~~ga  156 (344)
                      ||||+|+..|+.+++++|++++ ++++.++..|+ ||+|+|+     ..++.+++++|+++|+
T Consensus        96 TpLh~Aa~~g~~eivk~Ll~~g-adin~~~~~g~~TpL~~Aa-----~~g~~eivk~LL~~~~  152 (284)
T PHA02791         96 TALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAV-----MLNDVSIVSYFLSEIP  152 (284)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCC-CCcCccCCCCCcHHHHHHH-----HcCCHHHHHHHHhcCC
Confidence            6666666666666666666666 56665555553 5666665     5555555555555543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.88  E-value=4e-22  Score=192.48  Aligned_cols=146  Identities=18%  Similarity=0.228  Sum_probs=133.4

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      |+.|++.+....+..+.+|.||||+|+..|+.++++.|++. +.+++.++..|+||||+|+..|+.+++++|+++|.   
T Consensus        84 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~---  159 (413)
T PHA02875         84 VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA---  159 (413)
T ss_pred             HHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC---
Confidence            67788888776677788999999999999999999888886 78889999999999999999999999999999654   


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCC-CHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDN-TAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~-Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                         .++.+|..|+||||+|+..|+.+++++|+++| ++++..+..|. ||+++|+     ..++.+++++|+++|++++.
T Consensus       160 ---~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g-a~~n~~~~~~~~t~l~~A~-----~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        160 ---CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG-ANIDYFGKNGCVAALCYAI-----ENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             ---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCcCCCCCCchHHHHHH-----HcCCHHHHHHHHHCCcCcch
Confidence               36789999999999999999999999999999 99999998875 8899999     88899999999999999886

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=3.3e-22  Score=169.52  Aligned_cols=135  Identities=16%  Similarity=0.267  Sum_probs=118.8

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHh-----CCCCcccccCCCChHHHHHHHcCC----HHHHHHHHhchhccCc
Q 043149           12 LVRVQGREGVTPLHYVAEKGNVDLLCKFLAA-----CPESILQVTIRKETALHVAAKYDR----LEVLETMLGWLRYVNM   82 (344)
Q Consensus        12 ~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~-----~~~~~~~~d~~G~t~Lh~A~~~g~----~~iv~~Ll~~~~~~~~   82 (344)
                      +++.+|..|.||||+||..|+.++++.|+..     .+..++.+|..|+||||+|+..|+    .+++++|++++.+   
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad---   89 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD---   89 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC---
Confidence            4667889999999999999999999888643     246788899999999999999999    5888999986543   


Q ss_pred             cccccccCC-CCCcHHHHHHHCCcHHHHHHHHhc-cCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCC
Q 043149           83 DDILNWKND-EGNTLLHISISRSHIQIVRLIVKR-VRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRE  158 (344)
Q Consensus        83 ~~~ln~~d~-~G~TpLH~Aa~~g~~~~v~~Ll~~-~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~  158 (344)
                         +|.+|. +|+||||+|+..++.+++++|+.. + ++++.+|.+|+||+++|.     ..++.+++++|++.++..
T Consensus        90 ---in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g-~~~~~~n~~g~tpL~~A~-----~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         90 ---INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPG-IDLHFCNADNKSPFELAI-----DNEDVAMMQILREIVATS  158 (169)
T ss_pred             ---CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCcCCCCCCCHHHHHH-----HCCCHHHHHHHHHHHHHh
Confidence               677885 899999999999999999999985 6 999999999999999999     888899999999886654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.88  E-value=2.2e-22  Score=192.44  Aligned_cols=146  Identities=22%  Similarity=0.291  Sum_probs=127.3

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccc-CCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVT-IRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      |+++++.....++..|++|.|+||+||.+++.++++.|+++ ++++|..+ .-|.||||+|+++|+..+|++|+++|++ 
T Consensus        60 v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAd-  137 (600)
T KOG0509|consen   60 VKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISH-GADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGAD-  137 (600)
T ss_pred             HHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHc-CCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCC-
Confidence            67888886777999999999999999999999999998887 77788887 5689999999999999999999998766 


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                           .+.+|.+|-||||+|++.|+.-.+-+|+.++ +++|.+|++|+|||++|+     ..+....+..|++.|+....
T Consensus       138 -----pt~~D~~G~~~lHla~~~~~~~~vayll~~~-~d~d~~D~~grTpLmwAa-----ykg~~~~v~~LL~f~a~~~~  206 (600)
T KOG0509|consen  138 -----PTLKDKQGLTPLHLAAQFGHTALVAYLLSKG-ADIDLRDNNGRTPLMWAA-----YKGFALFVRRLLKFGASLLL  206 (600)
T ss_pred             -----CceecCCCCcHHHHHHHhCchHHHHHHHHhc-ccCCCcCCCCCCHHHHHH-----HhcccHHHHHHHHhcccccc
Confidence                 5668889999999999999999999999888 899999999999999988     66666668888888887776

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=2e-22  Score=196.51  Aligned_cols=141  Identities=26%  Similarity=0.366  Sum_probs=127.6

Q ss_pred             CCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccc
Q 043149            9 DRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNW   88 (344)
Q Consensus         9 ~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~   88 (344)
                      ..++++..|++|.||||+||+.|+.+++..|+.. +.+++.++.++.||||.||++|+.+.|+.|++ ..   ...++|.
T Consensus       262 ~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~-Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~---~~rllne  336 (929)
T KOG0510|consen  262 EKELVNDEDNDGCTPLHYAARQGGPESVDNLLGF-GASINSKNKDEESPLHFAAIYGRINTVERLLQ-ES---DTRLLNE  336 (929)
T ss_pred             HHHHhhcccccCCchHHHHHHcCChhHHHHHHHc-CCcccccCCCCCCchHHHHHcccHHHHHHHHh-Cc---Ccccccc
Confidence            3466788899999999999999999999777765 89999999999999999999999999999998 11   2367999


Q ss_pred             cCCCCCcHHHHHHHCCcHHHHHHHHhccCcccc---cccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           89 KNDEGNTLLHISISRSHIQIVRLIVKRVRDQIN---ARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        89 ~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~---~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      .|..|+||||+|++.|+.+++++|+++| ++.+   ..|.+|.||||+|+     .+++..++++|+.+|++++.
T Consensus       337 ~D~~g~tpLHlaa~~gH~~v~qlLl~~G-A~~~~~~e~D~dg~TaLH~Aa-----~~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  337 SDLHGMTPLHLAAKSGHDRVVQLLLNKG-ALFLNMSEADSDGNTALHLAA-----KYGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             ccccCCCchhhhhhcCHHHHHHHHHhcC-hhhhcccccccCCchhhhHHH-----HhccHHHHHHHHHcCCceee
Confidence            9999999999999999999999999999 6554   45999999999999     99999999999999999944

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.1e-21  Score=192.82  Aligned_cols=147  Identities=19%  Similarity=0.243  Sum_probs=118.5

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHh--------------------------------------
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAA--------------------------------------   42 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~--------------------------------------   42 (344)
                      +|+.||+.+.+ ++.+|.+|+||||+||..|+.++++.|+..                                      
T Consensus        52 ~vk~Ll~~gad-vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~  130 (477)
T PHA02878         52 VVKSLLTRGHN-VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQT  130 (477)
T ss_pred             HHHHHHHCCCC-CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCccc
Confidence            46788887766 788899999999999988776555444332                                      


Q ss_pred             -------------------------CCCCcccccCC-CChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcH
Q 043149           43 -------------------------CPESILQVTIR-KETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTL   96 (344)
Q Consensus        43 -------------------------~~~~~~~~d~~-G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~Tp   96 (344)
                                               .+.+++..|.. |+||||+|+.+|+.+++++|+++|++      ++.+|..|+||
T Consensus       131 ~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad------~n~~d~~g~tp  204 (477)
T PHA02878        131 IDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN------VNIPDKTNNSP  204 (477)
T ss_pred             CcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC------CCCcCCCCCCH
Confidence                                     24455666666 89999999999999999999986543      67788889999


Q ss_pred             HHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCc-cHHHHHHHHHHcCCCCCC
Q 043149           97 LHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKP-EFEELKSMVRKAGGRERS  160 (344)
Q Consensus        97 LH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~-~~~~i~~~L~~~ga~~~~  160 (344)
                      ||+|+..|+.+++++|++.| ++++.+|..|+||||+|+     .. ++.+++++|+++|++++.
T Consensus       205 Lh~A~~~~~~~iv~~Ll~~g-a~in~~d~~g~TpLh~A~-----~~~~~~~iv~~Ll~~gadvn~  263 (477)
T PHA02878        205 LHHAVKHYNKPIVHILLENG-ASTDARDKCGNTPLHISV-----GYCKDYDILKLLLEHGVDVNA  263 (477)
T ss_pred             HHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-----HhcCCHHHHHHHHHcCCCCCc
Confidence            99999999999999999988 899999999999999988     43 578899999999988876

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.6e-21  Score=189.49  Aligned_cols=152  Identities=15%  Similarity=0.249  Sum_probs=135.4

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      |+.|++.++..++..+.+|.||||.|+..|+.++++.|++. +..++..+..|.||||.|+..|+.+++++|+++|.+..
T Consensus        17 v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~-Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~   95 (434)
T PHA02874         17 IEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKH-GADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTS   95 (434)
T ss_pred             HHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            67888888888889999999999999999999999888875 77888889999999999999999999999999876532


Q ss_pred             -----------------ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccH
Q 043149           82 -----------------MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEF  144 (344)
Q Consensus        82 -----------------~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~  144 (344)
                                       .+..++.+|..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+     ..++
T Consensus        96 ~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~g-ad~n~~d~~g~tpLh~A~-----~~~~  169 (434)
T PHA02874         96 ILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG-ADVNIEDDNGCYPIHIAI-----KHNF  169 (434)
T ss_pred             cchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCC-CCCCCcCCCCCCHHHHHH-----HCCc
Confidence                             23457788999999999999999999999999998 999999999999999999     8888


Q ss_pred             HHHHHHHHHcCCCCCC
Q 043149          145 EELKSMVRKAGGRERS  160 (344)
Q Consensus       145 ~~i~~~L~~~ga~~~~  160 (344)
                      .+++++|+++|++++.
T Consensus       170 ~~iv~~Ll~~g~~~n~  185 (434)
T PHA02874        170 FDIIKLLLEKGAYANV  185 (434)
T ss_pred             HHHHHHHHHCCCCCCC
Confidence            9999999999998765

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.1e-21  Score=192.75  Aligned_cols=145  Identities=22%  Similarity=0.272  Sum_probs=129.9

Q ss_pred             CHHHHHhcCCccccccCCC-CCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhc
Q 043149            1 MVLRLIDFDRNLVRVQGRE-GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY   79 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~-G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~   79 (344)
                      +++.|++.+.+ ++.+|.+ |.||||+|+..|+.++++.|++. +.+++.+|..|+||||+|+..|+.+++++|++.|++
T Consensus       149 iv~~Ll~~gad-in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~  226 (477)
T PHA02878        149 ITKLLLSYGAD-INMKDRHKGNTALHYATENKDQRLTELLLSY-GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS  226 (477)
T ss_pred             HHHHHHHcCCC-CCccCCCCCCCHHHHHHhCCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            36677887776 8888888 99999999999999999888876 788899999999999999999999999999996654


Q ss_pred             cCccccccccCCCCCcHHHHHHHC-CcHHHHHHHHhccCcccccccC-CCCCHHHHHhhhcCCCccHHHHHHHHHHcCCC
Q 043149           80 VNMDDILNWKNDEGNTLLHISISR-SHIQIVRLIVKRVRDQINARNS-KDNTAMDMVKFHLQTKPEFEELKSMVRKAGGR  157 (344)
Q Consensus        80 ~~~~~~ln~~d~~G~TpLH~Aa~~-g~~~~v~~Ll~~~~~~~~~~n~-~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~  157 (344)
                            ++.+|..|+||||+|+.. ++.+++++|+++| +++|.++. .|.||||+|.     .  +.+++++|+++|++
T Consensus       227 ------in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g-advn~~~~~~g~TpLh~A~-----~--~~~~v~~Ll~~gad  292 (477)
T PHA02878        227 ------TDARDKCGNTPLHISVGYCKDYDILKLLLEHG-VDVNAKSYILGLTALHSSI-----K--SERKLKLLLEYGAD  292 (477)
T ss_pred             ------CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC-CCCCccCCCCCCCHHHHHc-----c--CHHHHHHHHHCCCC
Confidence                  778999999999999975 7999999999999 99999986 8999999996     3  46889999999999


Q ss_pred             CCCC
Q 043149          158 ERSS  161 (344)
Q Consensus       158 ~~~~  161 (344)
                      ++..
T Consensus       293 in~~  296 (477)
T PHA02878        293 INSL  296 (477)
T ss_pred             CCCc
Confidence            9873

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.87  E-value=5.4e-22  Score=189.83  Aligned_cols=147  Identities=18%  Similarity=0.234  Sum_probs=131.7

Q ss_pred             CHHHHHhcCCccccccC-CCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhc
Q 043149            1 MVLRLIDFDRNLVRVQG-REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY   79 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d-~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~   79 (344)
                      +++.|++++++ ++..+ .-|.||||+||++|++.+|..|+++ |++++.+|.+|.|+||+|+.+|+.-.|-+|+.++  
T Consensus        93 v~r~li~~gad-vn~~gG~l~stPLHWAar~G~~~vv~lLlqh-GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~--  168 (600)
T KOG0509|consen   93 VARYLISHGAD-VNAIGGVLGSTPLHWAARNGHISVVDLLLQH-GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG--  168 (600)
T ss_pred             HHHHHHHcCCC-ccccCCCCCCCcchHHHHcCcHHHHHHHHHc-CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhc--
Confidence            46888998888 77776 7899999999999999999777765 8999999999999999999999999999999865  


Q ss_pred             cCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCccccccc-CCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCC
Q 043149           80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN-SKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRE  158 (344)
Q Consensus        80 ~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n-~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~  158 (344)
                          .+++.+|.+|+||||+|+.+|+...++.|+.-+ +.++.+| ++|.||||+|+     ..++.+++.++++.|++.
T Consensus       169 ----~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~-a~~~~~d~~~g~TpLHwa~-----~~gN~~~v~Ll~~g~~~~  238 (600)
T KOG0509|consen  169 ----ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFG-ASLLLTDDNHGNTPLHWAV-----VGGNLTAVKLLLEGGADL  238 (600)
T ss_pred             ----ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhc-ccccccccccCCchHHHHH-----hcCCcceEehhhhcCCcc
Confidence                447889999999999999999998899999999 8888888 99999999999     888888888777777777


Q ss_pred             CCC
Q 043149          159 RSS  161 (344)
Q Consensus       159 ~~~  161 (344)
                      ...
T Consensus       239 d~~  241 (600)
T KOG0509|consen  239 DKT  241 (600)
T ss_pred             ccc
Confidence            763

>PHA02798 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.3e-21  Score=192.78  Aligned_cols=152  Identities=18%  Similarity=0.183  Sum_probs=116.0

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcC---CHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCC---HHHHHHHH
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKG---NVDLLCKFLAACPESILQVTIRKETALHVAAKYDR---LEVLETML   74 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G---~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~---~~iv~~Ll   74 (344)
                      +++.|++.+.+ ++.+|.+|.||||+|+..|   +.++++.|++. |.+++.+|.+|.||||+|+..++   .+++++|+
T Consensus        91 iv~~Ll~~Gad-iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll  168 (489)
T PHA02798         91 IVKILIENGAD-INKKNSDGETPLYCLLSNGYINNLEILLFMIEN-GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLL  168 (489)
T ss_pred             HHHHHHHCCCC-CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHH
Confidence            35677777776 8888888888888888775   67888777765 67788888888888888888877   78888888


Q ss_pred             hchhccCc-----------------------------------------------------------------------c
Q 043149           75 GWLRYVNM-----------------------------------------------------------------------D   83 (344)
Q Consensus        75 ~~~~~~~~-----------------------------------------------------------------------~   83 (344)
                      +.|.+++.                                                                       .
T Consensus       169 ~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~  248 (489)
T PHA02798        169 EKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSY  248 (489)
T ss_pred             HhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhc
Confidence            76654320                                                                       0


Q ss_pred             ccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           84 DILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        84 ~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      ..+|.+|..|+||||+|+..|+.+++++|+++| +++|.+|..|+|||++|+     ..++.++++.|++.|++++.
T Consensus       249 ~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~G-Adin~~d~~G~TpL~~A~-----~~~~~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        249 IDINQVDELGFNPLYYSVSHNNRKIFEYLLQLG-GDINIITELGNTCLFTAF-----ENESKFIFNSILNKKPNKNT  319 (489)
T ss_pred             CCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcC-CcccccCCCCCcHHHHHH-----HcCcHHHHHHHHccCCCHHH
Confidence            134556777888888888888888888888887 888888888888888888     77778888888887777654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=3.8e-22  Score=166.54  Aligned_cols=138  Identities=20%  Similarity=0.272  Sum_probs=112.5

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHH----hCCCCcccccCCCChHHHHHHHcCCH---HHHHHHHhchhccCcc
Q 043149           11 NLVRVQGREGVTPLHYVAEKGNVDLLCKFLA----ACPESILQVTIRKETALHVAAKYDRL---EVLETMLGWLRYVNMD   83 (344)
Q Consensus        11 ~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~----~~~~~~~~~d~~G~t~Lh~A~~~g~~---~iv~~Ll~~~~~~~~~   83 (344)
                      ...+.+|.+|.||||+||..|+.+.+.....    ..+..++.+|.+|+||||+|+..|+.   +++++|+++|.+    
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad----   83 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD----   83 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC----
Confidence            3467789999999999999998532211111    11223456789999999999999987   468889986544    


Q ss_pred             ccccccC-CCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCC
Q 043149           84 DILNWKN-DEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRER  159 (344)
Q Consensus        84 ~~ln~~d-~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~  159 (344)
                        ++.+| .+|+||||+|+..|+.+++++|+.+..++++.+|..|+||+|+|+     ..++.+++++|++.|++..
T Consensus        84 --in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~-----~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         84 --INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC-----ERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             --ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCC
Confidence              67788 489999999999999999999998533999999999999999999     8889999999999998864

>PHA02946 ankyin-like protein; Provisional

Probab=99.87  E-value=1.8e-21  Score=188.97  Aligned_cols=151  Identities=13%  Similarity=0.130  Sum_probs=109.3

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcC--CHHHHHHHHhchh
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYD--RLEVLETMLGWLR   78 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g--~~~iv~~Ll~~~~   78 (344)
                      +|+.||+.+.+ ++.+|.+|.||||+||..|+.++++.|++. +.+++.+|.+|+||||+|+..+  ..+++++|+++|+
T Consensus        54 iv~~Ll~~Gad-vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~-GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Ga  131 (446)
T PHA02946         54 FVEELLHRGYS-PNETDDDGNYPLHIASKINNNRIVAMLLTH-GADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGA  131 (446)
T ss_pred             HHHHHHHCcCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            47788888877 899999999999999999999999888875 7889999999999999998876  4789999999887


Q ss_pred             ccCc---------------------------cccccccCCCCCcHHHHHHHCC--cHHHHHHHHhccCcccccccCCCCC
Q 043149           79 YVNM---------------------------DDILNWKNDEGNTLLHISISRS--HIQIVRLIVKRVRDQINARNSKDNT  129 (344)
Q Consensus        79 ~~~~---------------------------~~~ln~~d~~G~TpLH~Aa~~g--~~~~v~~Ll~~~~~~~~~~n~~G~T  129 (344)
                      +++.                           +..++.+|..|+||||+|+..+  +.+++++|+++| ++++.+|.+|+|
T Consensus       132 din~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G-adin~~d~~G~T  210 (446)
T PHA02946        132 KINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLG-ISPSKPDHDGNT  210 (446)
T ss_pred             CcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcC-CCCcccCCCCCC
Confidence            6431                           1224445566666666655433  345666666666 666666666666


Q ss_pred             HHHHHhhhcCCCc--cHHHHHHHHHHcCCCCCC
Q 043149          130 AMDMVKFHLQTKP--EFEELKSMVRKAGGRERS  160 (344)
Q Consensus       130 pl~~a~~~~~~~~--~~~~i~~~L~~~ga~~~~  160 (344)
                      |||+|+     ..  ++.+++++|++ |++++.
T Consensus       211 pLH~Aa-----~~~~~~~~iv~lLl~-gadin~  237 (446)
T PHA02946        211 PLHIVC-----SKTVKNVDIINLLLP-STDVNK  237 (446)
T ss_pred             HHHHHH-----HcCCCcHHHHHHHHc-CCCCCC
Confidence            666666     32  24556665553 555554

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.86  E-value=3.5e-21  Score=187.16  Aligned_cols=147  Identities=16%  Similarity=0.211  Sum_probs=132.4

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhC----------------------CCCcccccCCCChHH
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAAC----------------------PESILQVTIRKETAL   58 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~----------------------~~~~~~~d~~G~t~L   58 (344)
                      +|+.|++.+.+ ++..+..|.||||.|+..|+.++++.|++.+                      +.+++.+|..|.|||
T Consensus        50 iv~~Ll~~Ga~-~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~L  128 (434)
T PHA02874         50 IVELFIKHGAD-INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFL  128 (434)
T ss_pred             HHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHH
Confidence            47888888877 7889999999999999999999998888653                      334667788999999


Q ss_pred             HHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhc
Q 043149           59 HVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHL  138 (344)
Q Consensus        59 h~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~  138 (344)
                      |+|+..|+.+++++|+++|.+      ++.+|.+|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+   
T Consensus       129 h~A~~~~~~~~v~~Ll~~gad------~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-~~~n~~~~~g~tpL~~A~---  198 (434)
T PHA02874        129 HYAIKKGDLESIKMLFEYGAD------VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG-AYANVKDNNGESPLHNAA---  198 (434)
T ss_pred             HHHHHCCCHHHHHHHHhCCCC------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH---
Confidence            999999999999999996654      6778999999999999999999999999999 999999999999999999   


Q ss_pred             CCCccHHHHHHHHHHcCCCCCC
Q 043149          139 QTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       139 ~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                        ..++.+++++|++.|++...
T Consensus       199 --~~g~~~iv~~Ll~~g~~i~~  218 (434)
T PHA02874        199 --EYGDYACIKLLIDHGNHIMN  218 (434)
T ss_pred             --HcCCHHHHHHHHhCCCCCcC
Confidence              88999999999999998765

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.86  E-value=4.6e-21  Score=168.03  Aligned_cols=143  Identities=17%  Similarity=0.220  Sum_probs=102.2

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcC--CHHHHHHHHHhCCCCccccc-CCCChHHHHHHHc---CCHHHHHHHHh
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKG--NVDLLCKFLAACPESILQVT-IRKETALHVAAKY---DRLEVLETMLG   75 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G--~~~~v~~LL~~~~~~~~~~d-~~G~t~Lh~A~~~---g~~~iv~~Ll~   75 (344)
                      |+.|++.    ++.+|..|.||||+|+..+  +.++++.|++. +.+++.++ ..|+||||+|+..   ++.+++++|++
T Consensus        37 vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~  111 (209)
T PHA02859         37 VKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNFKTRDNNLSALHHYLSFNKNVEPEILKILID  111 (209)
T ss_pred             HHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHH
Confidence            4455542    4567778888888887744  77888777765 66677765 4688888887653   36788888887


Q ss_pred             chhccCccccccccCCCCCcHHHHHHH--CCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHH
Q 043149           76 WLRYVNMDDILNWKNDEGNTLLHISIS--RSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRK  153 (344)
Q Consensus        76 ~~~~~~~~~~ln~~d~~G~TpLH~Aa~--~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~  153 (344)
                      +|++      +|.+|.+|.||||+|+.  .++.+++++|+++| ++++.+|.+|.||+|.++.    ..++.+++++|++
T Consensus       112 ~gad------in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g-adin~~d~~g~t~Lh~~a~----~~~~~~iv~~Ll~  180 (209)
T PHA02859        112 SGSS------ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG-VSFLNKDFDNNNILYSYIL----FHSDKKIFDFLTS  180 (209)
T ss_pred             CCCC------CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC-CCcccccCCCCcHHHHHHH----hcCCHHHHHHHHH
Confidence            5543      66778888888888765  35778888888887 8888888888888885431    4556788888888


Q ss_pred             cCCCCCC
Q 043149          154 AGGRERS  160 (344)
Q Consensus       154 ~ga~~~~  160 (344)
                      +|++++.
T Consensus       181 ~Gadi~~  187 (209)
T PHA02859        181 LGIDINE  187 (209)
T ss_pred             cCCCCCC
Confidence            8887765

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.86  E-value=3e-21  Score=189.82  Aligned_cols=146  Identities=20%  Similarity=0.230  Sum_probs=98.1

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcC--CHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchh
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKG--NVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR   78 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G--~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~   78 (344)
                      +++.|++.+.+ ++.+|..|.||||+|+..|  +.++++.|++. +.+++..|..|.||||+|+..|+.+++++|+++|+
T Consensus       123 iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~-g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  200 (480)
T PHA03100        123 IVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKLLIDK-GVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGA  200 (480)
T ss_pred             HHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHHHHHC-CCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            46677777666 7778888888888888888  88888777765 66777788888888888888888888888888665


Q ss_pred             ccCccccccccCCCC------CcHHHHHHHCCc--HHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHH
Q 043149           79 YVNMDDILNWKNDEG------NTLLHISISRSH--IQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSM  150 (344)
Q Consensus        79 ~~~~~~~ln~~d~~G------~TpLH~Aa~~g~--~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~  150 (344)
                      +      ++..+..|      .||||.|+..|+  .+++++|+++| +++|.+|..|.||||+|+     ..++.+++++
T Consensus       201 ~------~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g-~din~~d~~g~TpL~~A~-----~~~~~~iv~~  268 (480)
T PHA03100        201 D------INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG-VPINIKDVYGFTPLHYAV-----YNNNPEFVKY  268 (480)
T ss_pred             C------ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-----HcCCHHHHHH
Confidence            4      33344444      555555555555  55555555555 555555555555555555     4445555555


Q ss_pred             HHHcCCCCCC
Q 043149          151 VRKAGGRERS  160 (344)
Q Consensus       151 L~~~ga~~~~  160 (344)
                      |++.|++++.
T Consensus       269 Ll~~gad~n~  278 (480)
T PHA03100        269 LLDLGANPNL  278 (480)
T ss_pred             HHHcCCCCCc
Confidence            5555555443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=4.2e-21  Score=162.25  Aligned_cols=136  Identities=18%  Similarity=0.240  Sum_probs=117.4

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHH---HHhCCCCcccccCCCChHHHHHHHcCCHHH---HHHHHhchhccCccccc
Q 043149           13 VRVQGREGVTPLHYVAEKGNVDLLCKF---LAACPESILQVTIRKETALHVAAKYDRLEV---LETMLGWLRYVNMDDIL   86 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~G~~~~v~~L---L~~~~~~~~~~d~~G~t~Lh~A~~~g~~~i---v~~Ll~~~~~~~~~~~l   86 (344)
                      ++..+.++.++||.||+.|+.+.++++   +...+..++..|..|+||||+|+.+|+.+.   +++|++.|.+      +
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad------i   86 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD------I   86 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC------C
Confidence            556788899999999999998544432   334567788889999999999999998654   7899986544      6


Q ss_pred             cccC-CCCCcHHHHHHHCCcHHHHHHHHh-ccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           87 NWKN-DEGNTLLHISISRSHIQIVRLIVK-RVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        87 n~~d-~~G~TpLH~Aa~~g~~~~v~~Ll~-~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      |.+| ..|+||||+|+..|+.+++++|+. .+ ++++.+|..|+||+|+|+     ..++.+++++|+++|++.+.
T Consensus        87 n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g-ad~~~~d~~g~tpL~~A~-----~~~~~~iv~~Ll~~ga~~~~  156 (166)
T PHA02743         87 NARELGTGNTLLHIAASTKNYELAEWLCRQLG-VNLGAINYQHETAYHIAY-----KMRDRRMMEILRANGAVCDD  156 (166)
T ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC-CCccCcCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCC
Confidence            7788 589999999999999999999996 67 999999999999999999     88889999999999999887

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.85  E-value=5.4e-21  Score=198.97  Aligned_cols=145  Identities=15%  Similarity=0.239  Sum_probs=131.2

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +++.||+.+.+ ++..|.+|+||||+||..|+.++++.|++. +.+++.+|.+|+||||+|+..|+.+++++|++.+.. 
T Consensus       540 ~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~-  616 (823)
T PLN03192        540 LLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKH-ACNVHIRDANGNTALWNAISAKHHKIFRILYHFASI-  616 (823)
T ss_pred             HHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcc-
Confidence            36778888777 899999999999999999999999888875 888999999999999999999999999999985432 


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                           .  .+..|.++||.|+..|+.++++.|+++| +++|.+|.+|+||||+|+     ..++.+++++|+++|++++.
T Consensus       617 -----~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~G-adin~~d~~G~TpLh~A~-----~~g~~~iv~~Ll~~GAdv~~  683 (823)
T PLN03192        617 -----S--DPHAAGDLLCTAAKRNDLTAMKELLKQG-LNVDSEDHQGATALQVAM-----AEDHVDMVRLLIMNGADVDK  683 (823)
T ss_pred             -----c--CcccCchHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH-----HCCcHHHHHHHHHcCCCCCC
Confidence                 1  2356789999999999999999999999 999999999999999999     88999999999999999987


Q ss_pred             C
Q 043149          161 S  161 (344)
Q Consensus       161 ~  161 (344)
                      .
T Consensus       684 ~  684 (823)
T PLN03192        684 A  684 (823)
T ss_pred             C
Confidence            4

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.85  E-value=6e-21  Score=192.41  Aligned_cols=152  Identities=18%  Similarity=0.185  Sum_probs=116.4

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCC--HHHHHHHHHhCCCCcccccCCCChHHHHHH----------------
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGN--VDLLCKFLAACPESILQVTIRKETALHVAA----------------   62 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~--~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~----------------   62 (344)
                      +|+.|++.+.+ ++.+|.+|.||||+|+..|+  .++++.|++. |++++.+|..|+||||.|+                
T Consensus       194 IVklLLe~GAD-VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~-GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie  271 (764)
T PHA02716        194 ILEWLCNNGVN-VNLQNNHLITPLHTYLITGNVCASVIKKIIEL-GGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIE  271 (764)
T ss_pred             HHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHH
Confidence            35667777665 88888888888888888885  4788777765 7788888888888888653                


Q ss_pred             ---------------------HcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHH--CCcHHHHHHHHhccCcc
Q 043149           63 ---------------------KYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISIS--RSHIQIVRLIVKRVRDQ  119 (344)
Q Consensus        63 ---------------------~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~--~g~~~~v~~Ll~~~~~~  119 (344)
                                           +.|+.+++++|++.|      ..++.+|.+|+||||+|+.  .++.+++++|+++| ++
T Consensus       272 ~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G------AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G-AD  344 (764)
T PHA02716        272 SLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG------VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYG-ND  344 (764)
T ss_pred             hccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC------CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcC-CC
Confidence                                 345566666666644      3477889999999998764  46789999999998 99


Q ss_pred             cccccCCCCCHHHHHhhhc---------CCCccHHHHHHHHHHcCCCCCCC
Q 043149          120 INARNSKDNTAMDMVKFHL---------QTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus       120 ~~~~n~~G~Tpl~~a~~~~---------~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      ++.+|..|+||||+|+...         ....++.+++++|+++|++++..
T Consensus       345 IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~k  395 (764)
T PHA02716        345 LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAV  395 (764)
T ss_pred             CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCc
Confidence            9999999999999876210         01235789999999999998763

>PHA03095 ankyrin-like protein; Provisional

Probab=99.85  E-value=9.5e-21  Score=185.79  Aligned_cols=151  Identities=22%  Similarity=0.138  Sum_probs=97.9

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcC-CHHHHHHHHHhCCCCcccccCCCChHHHHHH--HcCCHHHHHHHHhchh
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKG-NVDLLCKFLAACPESILQVTIRKETALHVAA--KYDRLEVLETMLGWLR   78 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G-~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~--~~g~~~iv~~Ll~~~~   78 (344)
                      ++.|++.+.+ ++.+|..|.||||+|+..| +.++++.|++. +.+++.+|..|+||||+|+  ..++.+++++|+++|.
T Consensus        66 v~~Ll~~Gad-in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~-ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~ga  143 (471)
T PHA03095         66 VRLLLEAGAD-VNAPERCGFTPLHLYLYNATTLDVIKLLIKA-GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGA  143 (471)
T ss_pred             HHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCC
Confidence            4556666655 6677777777777777777 46776555554 6666777777777777777  4456666666666654


Q ss_pred             ccC----------------------------------------------------------------ccccccccCCCCC
Q 043149           79 YVN----------------------------------------------------------------MDDILNWKNDEGN   94 (344)
Q Consensus        79 ~~~----------------------------------------------------------------~~~~ln~~d~~G~   94 (344)
                      +++                                                                .+..++.+|..|+
T Consensus       144 d~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~  223 (471)
T PHA03095        144 DVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGN  223 (471)
T ss_pred             CCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCC
Confidence            432                                                                1122344455555


Q ss_pred             cHHHHHHHCCcH--HHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           95 TLLHISISRSHI--QIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        95 TpLH~Aa~~g~~--~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      ||||+|+..|+.  .+++.|++.+ +++|.+|..|+||||+|+     ..++.+++++|++.|++++.
T Consensus       224 tpLh~Aa~~~~~~~~~v~~ll~~g-~din~~d~~g~TpLh~A~-----~~~~~~~v~~LL~~gad~n~  285 (471)
T PHA03095        224 TPLHSMATGSSCKRSLVLPLLIAG-ISINARNRYGQTPLHYAA-----VFNNPRACRRLIALGADINA  285 (471)
T ss_pred             CHHHHHHhcCCchHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCcc
Confidence            555555555542  4556666666 777777777777777777     67777888888888887765

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.3e-20  Score=186.12  Aligned_cols=65  Identities=17%  Similarity=0.164  Sum_probs=48.3

Q ss_pred             ccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCC
Q 043149           86 LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGG  156 (344)
Q Consensus        86 ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga  156 (344)
                      +|.+|.+|+||||+|+..|+.+++++|+++| +++|.+|..|.||||+|+     ..++.++++.|++.+.
T Consensus       249 vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G-adin~~d~~G~TpL~~A~-----~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        249 INKKDKKGFNPLLISAKVDNYEAFNYLLKLG-DDIYNVSKDGDTVLTYAI-----KHGNIDMLNRILQLKP  313 (494)
T ss_pred             CCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC-CCccccCCCCCCHHHHHH-----HcCCHHHHHHHHhcCC
Confidence            4566677777777777777777777777777 777777777777777777     6677777777776643

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.2e-20  Score=185.52  Aligned_cols=146  Identities=21%  Similarity=0.300  Sum_probs=100.8

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHH--HcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcC--CHHHHHHHHhch
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVA--EKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYD--RLEVLETMLGWL   77 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa--~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g--~~~iv~~Ll~~~   77 (344)
                      ++.|++.+++ ++..|..|.||||+|+  ..|+.++++.|++. +.+++..|..|+||||+|+..|  +.+++++|+++|
T Consensus        89 v~~Ll~~ga~-i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g  166 (480)
T PHA03100         89 VKLLLEYGAN-VNAPDNNGITPLLYAISKKSNSYSIVEYLLDN-GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG  166 (480)
T ss_pred             HHHHHHCCCC-CCCCCCCCCchhhHHHhcccChHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCC
Confidence            5566666666 4667777777777777  77777777666654 5566666777777777777777  777777777754


Q ss_pred             hccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCC------CCHHHHHhhhcCCCccH--HHHHH
Q 043149           78 RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKD------NTAMDMVKFHLQTKPEF--EELKS  149 (344)
Q Consensus        78 ~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G------~Tpl~~a~~~~~~~~~~--~~i~~  149 (344)
                      .+      ++.+|..|+||||+|+..|+.+++++|+++| ++++..+..|      .||+|.|+     ..++  .++++
T Consensus       167 ~d------in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~~~~~t~l~~a~-----~~~~~~~~iv~  234 (480)
T PHA03100        167 VD------INAKNRYGYTPLHIAVEKGNIDVIKFLLDNG-ADINAGDIETLLFTIFETPLHIAA-----CYNEITLEVVN  234 (480)
T ss_pred             CC------cccccCCCCCHHHHHHHhCCHHHHHHHHHcC-CCccCCCCCCCcHHHHHhHHHHHH-----HhCcCcHHHHH
Confidence            33      5556667777777777777777777777777 7777777777      67777777     5555  67777


Q ss_pred             HHHHcCCCCCCC
Q 043149          150 MVRKAGGRERSS  161 (344)
Q Consensus       150 ~L~~~ga~~~~~  161 (344)
                      +|++.|++++..
T Consensus       235 ~Ll~~g~din~~  246 (480)
T PHA03100        235 YLLSYGVPINIK  246 (480)
T ss_pred             HHHHcCCCCCCC
Confidence            777777766553

>PHA03095 ankyrin-like protein; Provisional

Probab=99.84  E-value=2.6e-20  Score=182.75  Aligned_cols=149  Identities=22%  Similarity=0.253  Sum_probs=132.2

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcC---CHHHHHHHHHhCCCCcccccCCCChHHHHHHHcC-CHHHHHHHHhc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKG---NVDLLCKFLAACPESILQVTIRKETALHVAAKYD-RLEVLETMLGW   76 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G---~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g-~~~iv~~Ll~~   76 (344)
                      +|+.|++.+.+ ++..+..|.||||+|+..|   +.++++.|++. +.+++.+|..|+||||+|+.+| +.+++++|+++
T Consensus        29 ~v~~Ll~~ga~-vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~  106 (471)
T PHA03095         29 EVRRLLAAGAD-VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKA  106 (471)
T ss_pred             HHHHHHHcCCC-cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHc
Confidence            37788888777 8999999999999999999   99999888876 7889999999999999999999 59999999996


Q ss_pred             hhccCccccccccCCCCCcHHHHHH--HCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149           77 LRYVNMDDILNWKNDEGNTLLHISI--SRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus        77 ~~~~~~~~~ln~~d~~G~TpLH~Aa--~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                      |.+      ++.+|..|+||||+|+  ..++.+++++|+++| ++++.+|..|.||+|+++..   .....+++++|+++
T Consensus       107 ga~------in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~g-ad~~~~d~~g~tpL~~a~~~---~~~~~~iv~~Ll~~  176 (471)
T PHA03095        107 GAD------VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG-ADVNALDLYGMTPLAVLLKS---RNANVELLRLLIDA  176 (471)
T ss_pred             CCC------CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHc---CCCCHHHHHHHHHc
Confidence            654      7889999999999999  566899999999999 99999999999999998832   23468999999999


Q ss_pred             CCCCCCC
Q 043149          155 GGRERSS  161 (344)
Q Consensus       155 ga~~~~~  161 (344)
                      |++....
T Consensus       177 g~~~~~~  183 (471)
T PHA03095        177 GADVYAV  183 (471)
T ss_pred             CCCCccc
Confidence            9988763

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.83  E-value=3.6e-20  Score=186.77  Aligned_cols=149  Identities=12%  Similarity=0.119  Sum_probs=127.4

Q ss_pred             CHHHHHhcC-Ccccccc-CCCCCcHHHHHHH--cCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCC--HHHHHHHH
Q 043149            1 MVLRLIDFD-RNLVRVQ-GREGVTPLHYVAE--KGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDR--LEVLETML   74 (344)
Q Consensus         1 ~v~~LL~~~-~~~~~~~-d~~G~TpLh~Aa~--~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~--~~iv~~Ll   74 (344)
                      +|+.|++.+ .+ ++.+ |..|.||||.|+.  .|+.++++.|++. +.+++..|..|+||||+|++.|+  .+++++|+
T Consensus       157 iVk~LLe~G~AD-IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLL  234 (764)
T PHA02716        157 LIKYMVDVGIVN-LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQNNHLITPLHTYLITGNVCASVIKKII  234 (764)
T ss_pred             HHHHHHHCCCCC-cccccCCCCCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence            478899988 55 7887 9999999999864  4678999888876 78899999999999999999995  59999999


Q ss_pred             hchhccCccccccccCCCCCcHHHHH-------------------------------------HHCCcHHHHHHHHhccC
Q 043149           75 GWLRYVNMDDILNWKNDEGNTLLHIS-------------------------------------ISRSHIQIVRLIVKRVR  117 (344)
Q Consensus        75 ~~~~~~~~~~~ln~~d~~G~TpLH~A-------------------------------------a~~g~~~~v~~Ll~~~~  117 (344)
                      ++|++      +|.+|..|+||||.|                                     +..|+.+++++|+++| 
T Consensus       235 e~GAD------VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G-  307 (764)
T PHA02716        235 ELGGD------MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG-  307 (764)
T ss_pred             HcCCC------CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC-
Confidence            97654      678999999999975                                     4457889999999999 


Q ss_pred             cccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149          118 DQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus       118 ~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      ++++.+|..|+||||+|+..   ..++.+++++|+++|++++..
T Consensus       308 AdIN~kD~~G~TPLH~Aaa~---~~~~~eIVklLLe~GADIN~k  348 (764)
T PHA02716        308 VKLHYKDSAGRTCLHQYILR---HNISTDIIKLLHEYGNDLNEP  348 (764)
T ss_pred             CceeccCCCCCCHHHHHHHH---hCCCchHHHHHHHcCCCCccC
Confidence            99999999999999987621   345689999999999998763

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.83  E-value=1.1e-20  Score=165.02  Aligned_cols=145  Identities=23%  Similarity=0.297  Sum_probs=126.7

Q ss_pred             HHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCc
Q 043149            3 LRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNM   82 (344)
Q Consensus         3 ~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~   82 (344)
                      +.+|+......++-|..|.+|||+||+.|+..+++.||.+ ++.++..|....||||+|+.+||-++|+.|++.      
T Consensus        17 rlwld~tehdln~gddhgfsplhwaakegh~aivemll~r-garvn~tnmgddtplhlaaahghrdivqkll~~------   89 (448)
T KOG0195|consen   17 RLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSR------   89 (448)
T ss_pred             EEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhc-ccccccccCCCCcchhhhhhcccHHHHHHHHHH------
Confidence            4456666667899999999999999999999999888877 888999999999999999999999999999984      


Q ss_pred             cccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           83 DDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        83 ~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      ++++|..++.||||||+||.-|...+++-|+..| +.++..|++|.||++.|.     ......+.++-.++|-.++.
T Consensus        90 kadvnavnehgntplhyacfwgydqiaedli~~g-a~v~icnk~g~tpldkak-----p~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen   90 KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCG-AAVNICNKKGMTPLDKAK-----PMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             hcccchhhccCCCchhhhhhhcHHHHHHHHHhcc-ceeeecccCCCCchhhhc-----hHHHHHHHHHHHHhCCCCCc
Confidence            4568999999999999999999999999999999 999999999999999987     44445555666677777664

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.83  E-value=6.5e-20  Score=160.77  Aligned_cols=126  Identities=17%  Similarity=0.182  Sum_probs=110.4

Q ss_pred             CHHHHHhcCCccccccC-CCCCcHHHHHHHc---CCHHHHHHHHHhCCCCcccccCCCChHHHHHHH--cCCHHHHHHHH
Q 043149            1 MVLRLIDFDRNLVRVQG-REGVTPLHYVAEK---GNVDLLCKFLAACPESILQVTIRKETALHVAAK--YDRLEVLETML   74 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d-~~G~TpLh~Aa~~---G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~--~g~~~iv~~Ll   74 (344)
                      +++.||+.+.+ ++.++ ..|.||||+|+..   |+.++++.|++. +.+++.+|.+|+||||+|+.  .++.+++++|+
T Consensus        68 iv~~Ll~~gad-vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~-gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li  145 (209)
T PHA02859         68 ILKFLIENGAD-VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS-GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLI  145 (209)
T ss_pred             HHHHHHHCCCC-CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHH
Confidence            47788888887 77776 5899999998864   579999888865 88999999999999999986  46899999999


Q ss_pred             hchhccCccccccccCCCCCcHHHH-HHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHh
Q 043149           75 GWLRYVNMDDILNWKNDEGNTLLHI-SISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus        75 ~~~~~~~~~~~ln~~d~~G~TpLH~-Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~  135 (344)
                      ++|.+      ++.+|.+|+||||. |+..++.+++++|+++| ++++.+|..|.||+|+|.
T Consensus       146 ~~gad------in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~G-adi~~~d~~g~tpl~la~  200 (209)
T PHA02859        146 DSGVS------FLNKDFDNNNILYSYILFHSDKKIFDFLTSLG-IDINETNKSGYNCYDLIK  200 (209)
T ss_pred             HcCCC------cccccCCCCcHHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHh
Confidence            96644      67899999999996 56788999999999999 999999999999999998

>PHA02795 ankyrin-like protein; Provisional

Probab=99.83  E-value=6e-20  Score=174.27  Aligned_cols=150  Identities=15%  Similarity=0.102  Sum_probs=121.0

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccc-----cCCCChHHHHHHHcCCHHHHHHHHh
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQV-----TIRKETALHVAAKYDRLEVLETMLG   75 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~-----d~~G~t~Lh~A~~~g~~~iv~~Ll~   75 (344)
                      +|+.||++|.+ ++.  .++.||||.|+..|+.++++.|+..+....+..     +..|.+++|.|+..++.+++++|++
T Consensus       133 iV~~LI~~GAD-In~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs  209 (437)
T PHA02795        133 IVDFMVDHGAV-IYK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP  209 (437)
T ss_pred             HHHHHHHCCCC-CCC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh
Confidence            47788888887 555  356899999999999999988877643232222     2347788999999999999999998


Q ss_pred             chhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcC---CCccHHHHHHHHH
Q 043149           76 WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQ---TKPEFEELKSMVR  152 (344)
Q Consensus        76 ~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~---~~~~~~~i~~~L~  152 (344)
                      +|++      +|.+|.+|+||||+|+..|+.+++++|+++| +++|.+|..|.||||+|+....   ...++.+++++|+
T Consensus       210 ~GAD------IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~G-AdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL  282 (437)
T PHA02795        210 YIED------INQLDAGGRTLLYRAIYAGYIDLVSWLLENG-ANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILL  282 (437)
T ss_pred             CcCC------cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHH
Confidence            6644      7889999999999999999999999999999 9999999999999999993221   0123679999999


Q ss_pred             HcCCCCCC
Q 043149          153 KAGGRERS  160 (344)
Q Consensus       153 ~~ga~~~~  160 (344)
                      ++|++.+.
T Consensus       283 ~~gadI~~  290 (437)
T PHA02795        283 REPLSIDC  290 (437)
T ss_pred             hCCCCCCc
Confidence            99998876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=4.9e-20  Score=149.76  Aligned_cols=127  Identities=24%  Similarity=0.301  Sum_probs=77.5

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      |++||+.+++.++.+|.+|.||||-|+.+|+.++|++|+.. +++.+.+...||||||-||+..+.+++.+|+++|++  
T Consensus        79 V~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaD--  155 (228)
T KOG0512|consen   79 VQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGAD--  155 (228)
T ss_pred             HHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHc-cCCcccccccCccchhhhhcccchhHHHHHHhccCc--
Confidence            55666666666666666666666666666666666666654 555666666666666666666666666666664433  


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcH-HHHHHHHhccCcccccccCCCCCHHHHHh
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHI-QIVRLIVKRVRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~-~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~  135 (344)
                          +|.+.....||||+||...+. ..+++|+.....+...+|+.+.||+++|.
T Consensus       156 ----VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  156 ----VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             ----ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHH
Confidence                555555566666666655433 34455544333555666666666666665

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.81  E-value=2.6e-19  Score=183.39  Aligned_cols=152  Identities=20%  Similarity=0.279  Sum_probs=126.0

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +++.|++.+.+ ++.+|..|.||||+||..|+.++|+.|++. +.+++..+.+|.||||+|+..++.++++.|++.+.+.
T Consensus       160 i~k~Ll~~Gad-vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~-Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~  237 (682)
T PHA02876        160 IAEMLLEGGAD-VNAKDIYCITPIHYAAERGNAKMVNLLLSY-GADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNI  237 (682)
T ss_pred             HHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            35677777776 899999999999999999999999888886 7888889999999999999999999999988765432


Q ss_pred             C-----------------------ccccccccCCCCCcHHHHHHHCCcH-HHHHHHHhccCcccccccCCCCCHHHHHhh
Q 043149           81 N-----------------------MDDILNWKNDEGNTLLHISISRSHI-QIVRLIVKRVRDQINARNSKDNTAMDMVKF  136 (344)
Q Consensus        81 ~-----------------------~~~~ln~~d~~G~TpLH~Aa~~g~~-~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~  136 (344)
                      .                       .+..++..|..|+||||+|+..|+. +++++|++.| ++++.+|.+|+||||+|+ 
T Consensus       238 ~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~g-adin~~d~~g~TpLh~Aa-  315 (682)
T PHA02876        238 NKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG-ADVNAKNIKGETPLYLMA-  315 (682)
T ss_pred             CCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHH-
Confidence            2                       2234677888899999999998886 5888888888 899999999999999998 


Q ss_pred             hcCCCcc-HHHHHHHHHHcCCCCCC
Q 043149          137 HLQTKPE-FEELKSMVRKAGGRERS  160 (344)
Q Consensus       137 ~~~~~~~-~~~i~~~L~~~ga~~~~  160 (344)
                          ..+ ..+++++|++.|++++.
T Consensus       316 ----~~g~~~~~v~~Ll~~gadin~  336 (682)
T PHA02876        316 ----KNGYDTENIRTLIMLGADVNA  336 (682)
T ss_pred             ----HhCCCHHHHHHHHHcCCCCCC
Confidence                555 46777777777777665

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.81  E-value=2.4e-19  Score=177.04  Aligned_cols=147  Identities=19%  Similarity=0.236  Sum_probs=122.8

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCc-ccccCCCChHHHHHHHc--CCHHHHHHHH
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEK---GNVDLLCKFLAACPESI-LQVTIRKETALHVAAKY--DRLEVLETML   74 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~---G~~~~v~~LL~~~~~~~-~~~d~~G~t~Lh~A~~~--g~~~iv~~Ll   74 (344)
                      +|+.||+.+.+ ++.+|.+|.||||.|+..   |+.++++.|++. |.++ +..|..|+||||+|+..  ++.+++++|+
T Consensus        90 iv~~Ll~~Gad-in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~-Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll  167 (494)
T PHA02989         90 IVKLLLKFGAD-INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSK-GINVNDVKNSRGYNLLHMYLESFSVKKDVIKILL  167 (494)
T ss_pred             HHHHHHHCCCC-CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHC-CCCcccccCCCCCCHHHHHHHhccCCHHHHHHHH
Confidence            36778888887 899999999999988765   678999888876 7888 78899999999998764  6899999999


Q ss_pred             hchhccCccccccc-cCCCCCcHHHHHHHCC----cHHHHHHHHhccCccc-----------------------------
Q 043149           75 GWLRYVNMDDILNW-KNDEGNTLLHISISRS----HIQIVRLIVKRVRDQI-----------------------------  120 (344)
Q Consensus        75 ~~~~~~~~~~~ln~-~d~~G~TpLH~Aa~~g----~~~~v~~Ll~~~~~~~-----------------------------  120 (344)
                      ++|++      ++. .|..|.||||.|+..+    +.+++++|+++| +++                             
T Consensus       168 ~~Gad------i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~G-a~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il  240 (494)
T PHA02989        168 SFGVN------LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKG-VNIETNNNGSESVLESFLDNNKILSKKEFKVL  240 (494)
T ss_pred             HcCCC------ccccccccCCChHHHHHhcccccccHHHHHHHHhCC-CCccccCCccccHHHHHHHhchhhcccchHHH
Confidence            97765      344 5778999999987654    788888888877 544                             


Q ss_pred             ---------ccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149          121 ---------NARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus       121 ---------~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                               |.+|..|+||||+|+     ..++.+++++|++.|++++..
T Consensus       241 ~~l~~~advn~~d~~G~TpL~~Aa-----~~~~~~~v~~LL~~Gadin~~  285 (494)
T PHA02989        241 NFILKYIKINKKDKKGFNPLLISA-----KVDNYEAFNYLLKLGDDIYNV  285 (494)
T ss_pred             HHHHhCCCCCCCCCCCCCHHHHHH-----HhcCHHHHHHHHHcCCCcccc
Confidence                     456677999999999     888999999999999999874

>PHA02798 ankyrin-like protein; Provisional

Probab=99.81  E-value=2.2e-19  Score=177.07  Aligned_cols=150  Identities=19%  Similarity=0.193  Sum_probs=127.3

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHc-----CCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcC---CHHHHHH
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEK-----GNVDLLCKFLAACPESILQVTIRKETALHVAAKYD---RLEVLET   72 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~-----G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g---~~~iv~~   72 (344)
                      +|+.||+.|.+ ++.+|..|.||||.|+..     ++.++++.|++. |.+++..|..|+||||+|+.++   +.+++++
T Consensus        53 iv~~Ll~~Gad-vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~-GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~  130 (489)
T PHA02798         53 IVKLFINLGAN-VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN-GADINKKNSDGETPLYCLLSNGYINNLEILLF  130 (489)
T ss_pred             HHHHHHHCCCC-CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC-CCCCCCCCCCcCcHHHHHHHcCCcChHHHHHH
Confidence            47888888886 899999999999998864     678999888875 7889999999999999999875   7899999


Q ss_pred             HHhchhccCccccccccCCCCCcHHHHHHHCCc---HHHHHHHHhccCccccccc-CCCCCHHHHHhhhcCCCccHHHHH
Q 043149           73 MLGWLRYVNMDDILNWKNDEGNTLLHISISRSH---IQIVRLIVKRVRDQINARN-SKDNTAMDMVKFHLQTKPEFEELK  148 (344)
Q Consensus        73 Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~---~~~v~~Ll~~~~~~~~~~n-~~G~Tpl~~a~~~~~~~~~~~~i~  148 (344)
                      |+++|++      ++.+|.+|.||||+|+..|+   .+++++|+++| ++++.++ ..|.||+|.+.... ...++.+++
T Consensus       131 Ll~~Gad------vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g-adin~~~~~~~~t~Lh~~~~~~-~~~~~~~iv  202 (489)
T PHA02798        131 MIENGAD------TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG-VDINTHNNKEKYDTLHCYFKYN-IDRIDADIL  202 (489)
T ss_pred             HHHcCCC------ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhC-CCcccccCcCCCcHHHHHHHhc-cccCCHHHH
Confidence            9996654      67899999999999999987   89999999999 9999885 57899999887211 134478999


Q ss_pred             HHHHHcCCCCCC
Q 043149          149 SMVRKAGGRERS  160 (344)
Q Consensus       149 ~~L~~~ga~~~~  160 (344)
                      ++|+++|++++.
T Consensus       203 k~Li~~Ga~i~~  214 (489)
T PHA02798        203 KLFVDNGFIINK  214 (489)
T ss_pred             HHHHHCCCCccc
Confidence            999999998876

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=4.5e-20  Score=165.62  Aligned_cols=130  Identities=23%  Similarity=0.342  Sum_probs=87.3

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCC--------------------------------------C
Q 043149           13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIR--------------------------------------K   54 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~--------------------------------------G   54 (344)
                      +|..|.+|+|+||||+.++++++|+.||+.+-.+++.+|.-                                      |
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~g  340 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHG  340 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhc
Confidence            56778888888888888888888888887755555655554                                      5


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHH
Q 043149           55 ETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMV  134 (344)
Q Consensus        55 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a  134 (344)
                      +|+|.+|+.+|+.++|+.|+..|      +++|.+|.+|.|+|++||.+||.+++++||....+|....|.+|.|+|.+|
T Consensus       341 QTALMLAVSHGr~d~vk~LLacg------AdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IA  414 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACG------ADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIA  414 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHcc------CCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhH
Confidence            55666666666666666666533      335666666666666666666666666666655566666666666666666


Q ss_pred             hhhcCCCccHHHHHHHHHH
Q 043149          135 KFHLQTKPEFEELKSMVRK  153 (344)
Q Consensus       135 ~~~~~~~~~~~~i~~~L~~  153 (344)
                      .     ..++.||.-+|..
T Consensus       415 l-----eagh~eIa~mlYa  428 (452)
T KOG0514|consen  415 L-----EAGHREIAVMLYA  428 (452)
T ss_pred             H-----hcCchHHHHHHHH
Confidence            6     6666666665554

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.81  E-value=2.6e-19  Score=183.44  Aligned_cols=105  Identities=16%  Similarity=0.232  Sum_probs=54.1

Q ss_pred             CCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCc-HHHHHHHHhccCccccc
Q 043149           44 PESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSH-IQIVRLIVKRVRDQINA  122 (344)
Q Consensus        44 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~-~~~v~~Ll~~~~~~~~~  122 (344)
                      +.+++.+|..|+||||+|+..|+.+++++|+++|++      ++..+..|.||||+|+..++ ..++++|+++| +++|.
T Consensus       365 gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad------~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g-adin~  437 (682)
T PHA02876        365 GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD------IEALSQKIGTALHFALCGTNPYMSVKTLIDRG-ANVNS  437 (682)
T ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------ccccCCCCCchHHHHHHcCCHHHHHHHHHhCC-CCCCc
Confidence            444444455555555555555555555555543322      33444455555555544333 23455555555 55566


Q ss_pred             ccCCCCCHHHHHhhhcCCCcc-HHHHHHHHHHcCCCCCC
Q 043149          123 RNSKDNTAMDMVKFHLQTKPE-FEELKSMVRKAGGRERS  160 (344)
Q Consensus       123 ~n~~G~Tpl~~a~~~~~~~~~-~~~i~~~L~~~ga~~~~  160 (344)
                      +|..|+||||+|+     ..+ +.+++++|++.|++++.
T Consensus       438 ~d~~G~TpLh~Aa-----~~~~~~~iv~lLl~~Gad~n~  471 (682)
T PHA02876        438 KNKDLSTPLHYAC-----KKNCKLDVIEMLLDNGADVNA  471 (682)
T ss_pred             CCCCCChHHHHHH-----HhCCcHHHHHHHHHCCCCCCC
Confidence            6666666666665     333 45566666666666554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=6.1e-20  Score=169.63  Aligned_cols=129  Identities=22%  Similarity=0.314  Sum_probs=63.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHH
Q 043149           19 EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLH   98 (344)
Q Consensus        19 ~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH   98 (344)
                      +|-+||..|+..||.++|+.|+.+ +..+|.......|||--||.-|+.++||+|++++++      ++..|..|+|.||
T Consensus        83 egappLWaAsaAGHl~vVk~L~~~-ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad------~~IanrhGhTcLm  155 (615)
T KOG0508|consen   83 EGAPPLWAASAAGHLEVVKLLLRR-GASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGAD------PEIANRHGHTCLM  155 (615)
T ss_pred             CCCchhhHHhccCcHHHHHHHHHh-cCccccccccCCccHHHHHhcchhHHHHHHHHcCCC------CcccccCCCeeEE
Confidence            344455555555555555444444 244444444444555555555555555555543322      3344445555555


Q ss_pred             HHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           99 ISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        99 ~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      +||.+|+.+++++|++.| +|+|.++.+|+|+||.++     +.|+.+++++|+++|+....
T Consensus       156 Ia~ykGh~~I~qyLle~g-ADvn~ks~kGNTALH~ca-----EsG~vdivq~Ll~~ga~i~~  211 (615)
T KOG0508|consen  156 IACYKGHVDIAQYLLEQG-ADVNAKSYKGNTALHDCA-----ESGSVDIVQLLLKHGAKIDV  211 (615)
T ss_pred             eeeccCchHHHHHHHHhC-CCcchhcccCchHHHhhh-----hcccHHHHHHHHhCCceeee
Confidence            555555555555555554 555555555555555554     44455555555554444433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.80  E-value=8.4e-20  Score=168.73  Aligned_cols=139  Identities=18%  Similarity=0.212  Sum_probs=126.9

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.|++.+.+ +|.......|||--||.-|+.|++++|+++ +.+++..|..|+|.||+||..||.+|+++|++.|   
T Consensus        99 vVk~L~~~ga~-VN~tT~TNStPLraACfDG~leivKyLvE~-gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~g---  173 (615)
T KOG0508|consen   99 VVKLLLRRGAS-VNDTTRTNSTPLRAACFDGHLEIVKYLVEH-GADPEIANRHGHTCLMIACYKGHVDIAQYLLEQG---  173 (615)
T ss_pred             HHHHHHHhcCc-cccccccCCccHHHHHhcchhHHHHHHHHc-CCCCcccccCCCeeEEeeeccCchHHHHHHHHhC---
Confidence            58889998855 888888999999999999999999999965 8999999999999999999999999999999955   


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                         +++|+++..|||+||.|+..|+.++++.|++++ +.++ +|..|.|||..|.     ..++.++++.|++.
T Consensus       174 ---ADvn~ks~kGNTALH~caEsG~vdivq~Ll~~g-a~i~-~d~~GmtPL~~Aa-----~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  174 ---ADVNAKSYKGNTALHDCAESGSVDIVQLLLKHG-AKID-VDGHGMTPLLLAA-----VTGHTDIVERLLQC  237 (615)
T ss_pred             ---CCcchhcccCchHHHhhhhcccHHHHHHHHhCC-ceee-ecCCCCchHHHHh-----hhcchHHHHHHhcC
Confidence               458899999999999999999999999999998 6554 5777999999999     88999999999974

>PHA02946 ankyin-like protein; Provisional

Probab=99.80  E-value=3.8e-19  Score=172.80  Aligned_cols=150  Identities=16%  Similarity=0.211  Sum_probs=108.5

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCC--HHHHHHHHHhCCCCccc-ccCCCChHHHHHHHcCCHHHHHHHHhch
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGN--VDLLCKFLAACPESILQ-VTIRKETALHVAAKYDRLEVLETMLGWL   77 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~--~~~v~~LL~~~~~~~~~-~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~   77 (344)
                      +|+.||+.+.+ ++.+|.+|.||||+|+..++  .++++.|++. +..++. .|..|.|||| |+..++.+++++|++.|
T Consensus        87 iv~lLL~~GAd-in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~-Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~g  163 (446)
T PHA02946         87 IVAMLLTHGAD-PNACDKQHKTPLYYLSGTDDEVIERINLLVQY-GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIG  163 (446)
T ss_pred             HHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcc
Confidence            36677777665 67788888888888776553  6677666654 455542 4555666665 44445555555555544


Q ss_pred             hccC-----------------------------ccccccccCCCCCcHHHHHHHCC--cHHHHHHHHhccCcccccccCC
Q 043149           78 RYVN-----------------------------MDDILNWKNDEGNTLLHISISRS--HIQIVRLIVKRVRDQINARNSK  126 (344)
Q Consensus        78 ~~~~-----------------------------~~~~ln~~d~~G~TpLH~Aa~~g--~~~~v~~Ll~~~~~~~~~~n~~  126 (344)
                      .+.+                             .+..++.+|.+|+||||+|+..|  +.+++++|++ + +++|.+|..
T Consensus       164 ad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-g-adin~~d~~  241 (446)
T PHA02946        164 FEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-S-TDVNKQNKF  241 (446)
T ss_pred             ccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-C-CCCCCCCCC
Confidence            3321                             23457889999999999999986  8899999985 6 999999999


Q ss_pred             CCCHHHHHhhhcCCCccH-HHHHHHHHHcCCCCCC
Q 043149          127 DNTAMDMVKFHLQTKPEF-EELKSMVRKAGGRERS  160 (344)
Q Consensus       127 G~Tpl~~a~~~~~~~~~~-~~i~~~L~~~ga~~~~  160 (344)
                      |+||||+|+     ..++ .+++++|+++|+....
T Consensus       242 G~TpLh~A~-----~~~~~~~~~~~Ll~~g~~~~~  271 (446)
T PHA02946        242 GDSPLTLLI-----KTLSPAHLINKLLSTSNVITD  271 (446)
T ss_pred             CCCHHHHHH-----HhCChHHHHHHHHhCCCCCCC
Confidence            999999999     5555 5889999999876543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.80  E-value=4.9e-19  Score=173.04  Aligned_cols=135  Identities=19%  Similarity=0.202  Sum_probs=103.0

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC----CCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC-------
Q 043149           13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACP----ESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN-------   81 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~----~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~-------   81 (344)
                      +...|.+|++|+|.|+.+|..|+.+.++.++|    ..++..|+.|.||||.|+..|++++++.+++.+....       
T Consensus       180 ~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~  259 (929)
T KOG0510|consen  180 PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAM  259 (929)
T ss_pred             CCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHH
Confidence            44445555555555555555555544444222    2456667778888888888888888888887665432       


Q ss_pred             --ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHH
Q 043149           82 --MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRK  153 (344)
Q Consensus        82 --~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~  153 (344)
                        ...++|..|++|.||||+|++.|++++++.|+..| ++++.+|+++.||||.|+     .+|+...++-|++
T Consensus       260 ~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~G-a~I~~kn~d~~spLH~AA-----~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  260 QQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFG-ASINSKNKDEESPLHFAA-----IYGRINTVERLLQ  327 (929)
T ss_pred             HHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcC-CcccccCCCCCCchHHHH-----HcccHHHHHHHHh
Confidence              23578899999999999999999999999999999 999999999999999999     8899999988887

>PHA02795 ankyrin-like protein; Provisional

Probab=99.78  E-value=2e-18  Score=163.96  Aligned_cols=150  Identities=14%  Similarity=0.054  Sum_probs=125.7

Q ss_pred             HHHHHhcCCcccc------ccCCCCCcHHHHHHH--cCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHH
Q 043149            2 VLRLIDFDRNLVR------VQGREGVTPLHYVAE--KGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETM   73 (344)
Q Consensus         2 v~~LL~~~~~~~~------~~d~~G~TpLh~Aa~--~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~L   73 (344)
                      ++.|+.++.. ++      .++..++|+||+|+.  .|+.++++.|+++ |++++.  .++.||||.|+..++.+++++|
T Consensus        93 ~~~l~s~~~~-~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~-GADIn~--~~~~t~lh~A~~~~~~eIVk~L  168 (437)
T PHA02795         93 ISALVSKNYM-EDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDH-GAVIYK--IECLNAYFRGICKKESSVVEFI  168 (437)
T ss_pred             HHHHHhcccc-cchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHC-CCCCCC--CCCCCHHHHHHHcCcHHHHHHH
Confidence            3444444444 44      578889999999999  8999999888875 888876  3568999999999999999999


Q ss_pred             HhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHH
Q 043149           74 LGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRK  153 (344)
Q Consensus        74 l~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~  153 (344)
                      +++|.+.......+..+..|.|++|.|+..++.+++++|+++| +++|.+|..|.||||+|+     ..++.+++++|++
T Consensus       169 ls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G-ADIN~kD~~G~TpLh~Aa-----~~g~~eiVelLL~  242 (437)
T PHA02795        169 LNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI-EDINQLDAGGRTLLYRAI-----YAGYIDLVSWLLE  242 (437)
T ss_pred             HhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc-CCcCcCCCCCCCHHHHHH-----HcCCHHHHHHHHH
Confidence            9988643222222333456889999999999999999999999 999999999999999999     8899999999999


Q ss_pred             cCCCCCCC
Q 043149          154 AGGRERSS  161 (344)
Q Consensus       154 ~ga~~~~~  161 (344)
                      +|++++..
T Consensus       243 ~GAdIN~~  250 (437)
T PHA02795        243 NGANVNAV  250 (437)
T ss_pred             CCCCCCCc
Confidence            99999874

>PHA02730 ankyrin-like protein; Provisional

Probab=99.78  E-value=2.3e-18  Score=170.94  Aligned_cols=148  Identities=14%  Similarity=0.196  Sum_probs=123.2

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCC----HHHHHHHHHhCC-CCcccccCCCChHHHH---HHHcC-------
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGN----VDLLCKFLAACP-ESILQVTIRKETALHV---AAKYD-------   65 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~----~~~v~~LL~~~~-~~~~~~d~~G~t~Lh~---A~~~g-------   65 (344)
                      +++.||+.+.+ ++.. ..|.||||+|+..++    .++++.|++.+. .+++..|..|+||||.   |...+       
T Consensus       361 IvelLIs~GAd-IN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e  438 (672)
T PHA02730        361 ILRCMLDNGAT-MDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYE  438 (672)
T ss_pred             HHHHHHHCCCC-CCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccc
Confidence            46788888877 7764 799999999999885    899999888744 2688889999999994   44332       


Q ss_pred             --CHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccC-CCCCHHHHHhhhcCCCc
Q 043149           66 --RLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNS-KDNTAMDMVKFHLQTKP  142 (344)
Q Consensus        66 --~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~-~G~Tpl~~a~~~~~~~~  142 (344)
                        ..+++++|+.+|++      +|.+|..|+||||+|+..++.+++++|+++| +++|.+|. .|.||+|.|+..   ..
T Consensus       439 ~~~~~ivk~LIs~GAD------INakD~~G~TPLh~Aa~~~~~eive~LI~~G-AdIN~~d~~~g~TaL~~Aa~~---~~  508 (672)
T PHA02730        439 TILIDVFDILSKYMDD------IDMIDNENKTLLYYAVDVNNIQFARRLLEYG-ASVNTTSRSIINTAIQKSSYR---RE  508 (672)
T ss_pred             hhHHHHHHHHHhcccc------hhccCCCCCCHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCcCCcCHHHHHHHh---hc
Confidence              23579999997654      7889999999999999999999999999999 99999997 599999999821   23


Q ss_pred             cHHHHHHHHHHcCCCCCC
Q 043149          143 EFEELKSMVRKAGGRERS  160 (344)
Q Consensus       143 ~~~~i~~~L~~~ga~~~~  160 (344)
                      ++.+++++|+++|++...
T Consensus       509 ~~~eIv~~LLs~ga~i~~  526 (672)
T PHA02730        509 NKTKLVDLLLSYHPTLET  526 (672)
T ss_pred             CcHHHHHHHHHcCCCHHH
Confidence            679999999999987653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.77  E-value=3.7e-18  Score=155.94  Aligned_cols=127  Identities=13%  Similarity=0.088  Sum_probs=106.4

Q ss_pred             ccccCCCCCcHH-HHHHHcCCHHHHHHHHHhCCCCcccc----cCCCChHHHHHHHcCCHHHHHHHHhchhccCcccccc
Q 043149           13 VRVQGREGVTPL-HYVAEKGNVDLLCKFLAACPESILQV----TIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILN   87 (344)
Q Consensus        13 ~~~~d~~G~TpL-h~Aa~~G~~~~v~~LL~~~~~~~~~~----d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln   87 (344)
                      +..+|++|+|++ |.|++.|+.++++.|++. |++++.+    +..|.||||+|+..++.+++++|+++|++      +|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD------VN   97 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKL-GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD------VN   97 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHC-CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------cC
Confidence            455788888765 556677999999888876 7778876    45899999999999999999999997665      66


Q ss_pred             cc-CCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHH
Q 043149           88 WK-NDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVR  152 (344)
Q Consensus        88 ~~-d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~  152 (344)
                      .+ +..|.||||+|+..|+.+++++|+..| ++++.+|..|.||+|+|+     ..++.+++.++.
T Consensus        98 ~~~~~~g~TpLh~Aa~~~~~eivklLL~~G-Adin~kd~~G~TpL~~A~-----~~~~~~~~~~~~  157 (300)
T PHA02884         98 RYAEEAKITPLYISVLHGCLKCLEILLSYG-ADINIQTNDMVTPIELAL-----MICNNFLAFMIC  157 (300)
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH-----HhCChhHHHHhc
Confidence            65 457999999999999999999999999 999999999999999998     555555554443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.77  E-value=5.2e-18  Score=171.42  Aligned_cols=157  Identities=14%  Similarity=0.142  Sum_probs=119.8

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHH----HHHHHH
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEK---GNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLE----VLETML   74 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~---G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~----iv~~Ll   74 (344)
                      |++||. ++...+.+|.+|+||||+||..   |+.++++.||+. +.+++..|..|+||||.|+..|+.+    +++.|+
T Consensus        15 ~~~l~~-~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~-ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll   92 (661)
T PHA02917         15 LKQMLR-DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS-GTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALL   92 (661)
T ss_pred             HHHHHh-ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHH
Confidence            567776 4444688899999999997555   889999888875 7888889999999999999988744    445666


Q ss_pred             hchhc--c-----------------------CccccccccCCCCCcHHHHHH--HCCcHHHHHHHHhccCcccccccCC-
Q 043149           75 GWLRY--V-----------------------NMDDILNWKNDEGNTLLHISI--SRSHIQIVRLIVKRVRDQINARNSK-  126 (344)
Q Consensus        75 ~~~~~--~-----------------------~~~~~ln~~d~~G~TpLH~Aa--~~g~~~~v~~Ll~~~~~~~~~~n~~-  126 (344)
                      +.+..  .                       ..+..+|.+|.+|+||||.|+  ..|+.+++++|+++| +++|.+|.+ 
T Consensus        93 ~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~G-a~vn~~d~~~  171 (661)
T PHA02917         93 EATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENG-CSVLYEDEDD  171 (661)
T ss_pred             hccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcC-CCcccccccc
Confidence            43211  0                       045568889999999999654  578999999999999 999876543 


Q ss_pred             --C-----------CCHHHHHhhh-cC-----CCccHHHHHHHHHHcCCCCCCC
Q 043149          127 --D-----------NTAMDMVKFH-LQ-----TKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus       127 --G-----------~Tpl~~a~~~-~~-----~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                        |           .||||+|+.. .+     ...++.+++++|+++|++++..
T Consensus       172 ~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~  225 (661)
T PHA02917        172 EYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSI  225 (661)
T ss_pred             ccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccC
Confidence              3           5999999721 00     0245789999999999999873

>PHA02917 ankyrin-like protein; Provisional

Probab=99.77  E-value=3e-18  Score=173.18  Aligned_cols=150  Identities=15%  Similarity=0.147  Sum_probs=115.5

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCC-----------------------------------HHHHHHHHHhCCC
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGN-----------------------------------VDLLCKFLAACPE   45 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~-----------------------------------~~~v~~LL~~~~~   45 (344)
                      +|+.||+.+.+ ++.+|..|.||||+|+..|+                                   .++|+.|++ .|.
T Consensus        50 ~v~~Ll~~ga~-v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~-~Ga  127 (661)
T PHA02917         50 VVKLLLDSGTN-PLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVE-HGF  127 (661)
T ss_pred             HHHHHHHCCCC-ccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHH-cCC
Confidence            46788887776 67889999999998887665                                   344444444 377


Q ss_pred             CcccccCCCChHHHHH--HHcCCHHHHHHHHhchhccCcccc--------ccccCCCCCcHHHHHHH-----------CC
Q 043149           46 SILQVTIRKETALHVA--AKYDRLEVLETMLGWLRYVNMDDI--------LNWKNDEGNTLLHISIS-----------RS  104 (344)
Q Consensus        46 ~~~~~d~~G~t~Lh~A--~~~g~~~iv~~Ll~~~~~~~~~~~--------ln~~d~~G~TpLH~Aa~-----------~g  104 (344)
                      +++..|.+|+||||.|  +.+|+.+++++|+++|++++....        .+.....+.||||+|+.           .+
T Consensus       128 din~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~  207 (661)
T PHA02917        128 DLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYV  207 (661)
T ss_pred             CCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccC
Confidence            8888899999999964  457899999999998876432100        00112234699999986           46


Q ss_pred             cHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccH--HHHHHHHHHcCCCCC
Q 043149          105 HIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEF--EELKSMVRKAGGRER  159 (344)
Q Consensus       105 ~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~--~~i~~~L~~~ga~~~  159 (344)
                      +.+++++|+++| +++|.+|.+|.||||+|+     ..++  .+++++|++ |++..
T Consensus       208 ~~eiv~~Li~~G-advn~~d~~G~TpLh~A~-----~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        208 RPEVVKCLINHG-IKPSSIDKNYCTALQYYI-----KSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             cHHHHHHHHHCC-CCcccCCCCCCcHHHHHH-----HcCCCcHHHHHHHHh-CCccc
Confidence            899999999999 999999999999999999     6555  489999975 87664

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.77  E-value=1.7e-18  Score=145.88  Aligned_cols=129  Identities=19%  Similarity=0.250  Sum_probs=96.7

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCcccccccc
Q 043149           10 RNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWK   89 (344)
Q Consensus        10 ~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~   89 (344)
                      ...+|..|+.|.|||.||+..|++++|+.||.. ++++....+..+++|.+|++.|..+||++|+..      +.++|..
T Consensus       150 ~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~lgk~resALsLAt~ggytdiV~lLL~r------~vdVNvy  222 (296)
T KOG0502|consen  150 NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDALGKYRESALSLATRGGYTDIVELLLTR------EVDVNVY  222 (296)
T ss_pred             hccccCccccCchHhHHHHhcCchHHHHHHHHc-CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhc------CCCccee
Confidence            345777788888888888888888888666654 677777777778888888888888888888873      3447777


Q ss_pred             CCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHH
Q 043149           90 NDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVR  152 (344)
Q Consensus        90 d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~  152 (344)
                      |.+|.|||-+|++.++.+|++.|+..| ++++..+..|.+++++|+     ..|+. +++..+
T Consensus       223 DwNGgTpLlyAvrgnhvkcve~Ll~sG-Ad~t~e~dsGy~~mdlAV-----alGyr-~Vqqvi  278 (296)
T KOG0502|consen  223 DWNGGTPLLYAVRGNHVKCVESLLNSG-ADVTQEDDSGYWIMDLAV-----ALGYR-IVQQVI  278 (296)
T ss_pred             ccCCCceeeeeecCChHHHHHHHHhcC-CCcccccccCCcHHHHHH-----HhhhH-HHHHHH
Confidence            888888888888888888888888887 888888888888888887     55555 443333

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.76  E-value=4.3e-18  Score=143.85  Aligned_cols=114  Identities=18%  Similarity=0.073  Sum_probs=98.2

Q ss_pred             cCCccccccCCCCCcHHHHHHHcCCHHH---HHHHHHhCCCCccccc-CCCChHHHHHHHcCCHHHHHHHHh-chhccCc
Q 043149            8 FDRNLVRVQGREGVTPLHYVAEKGNVDL---LCKFLAACPESILQVT-IRKETALHVAAKYDRLEVLETMLG-WLRYVNM   82 (344)
Q Consensus         8 ~~~~~~~~~d~~G~TpLh~Aa~~G~~~~---v~~LL~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~   82 (344)
                      ..+..++.+|.+|+||||+|+..|+.+.   ++.|+. .+..++.+| ..|+||||+|+..++.+++++|++ .+     
T Consensus        45 ~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~-~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g-----  118 (166)
T PHA02743         45 GDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVN-MGADINARELGTGNTLLHIAASTKNYELAEWLCRQLG-----  118 (166)
T ss_pred             hcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccC-----
Confidence            3444578899999999999999998765   555555 578899998 589999999999999999999995 44     


Q ss_pred             cccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCC
Q 043149           83 DDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT  129 (344)
Q Consensus        83 ~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~T  129 (344)
                       ..++.+|.+|.||||+|+..++.+++++|++++ ++++.++..|..
T Consensus       119 -ad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~  163 (166)
T PHA02743        119 -VNLGAINYQHETAYHIAYKMRDRRMMEILRANG-AVCDDPLSIGLS  163 (166)
T ss_pred             -CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcccCCcc
Confidence             346779999999999999999999999999999 999999888754

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.76  E-value=1.1e-18  Score=179.68  Aligned_cols=141  Identities=21%  Similarity=0.321  Sum_probs=82.1

Q ss_pred             ccccCCCCCcHHHHHHHcC-CHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC----------
Q 043149           13 VRVQGREGVTPLHYVAEKG-NVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN----------   81 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~G-~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~----------   81 (344)
                      .+.++..|.||+|+|+..| +.+....+++ .+..++.....|.||||+|+..|+.++++.+++.+...+          
T Consensus       433 ~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~-~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~l  511 (1143)
T KOG4177|consen  433 PNAKAKLGYTPLHVAAKKGRYLQIARLLLQ-YGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPL  511 (1143)
T ss_pred             hhhHhhcCCChhhhhhhcccHhhhhhhHhh-cCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchh
Confidence            4555555555555555555 4444433332 355555555555555555555555555555554331111          


Q ss_pred             -----------------ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccH
Q 043149           82 -----------------MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEF  144 (344)
Q Consensus        82 -----------------~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~  144 (344)
                                       .+..++.++..|+||||.||..|+.++|++|++++ ++++.+++.|+||||.|+     ..++
T Consensus       512 hla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~g-Adv~ak~~~G~TPLH~Aa-----~~G~  585 (1143)
T KOG4177|consen  512 HLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHG-ADVNAKDKLGYTPLHQAA-----QQGH  585 (1143)
T ss_pred             hhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCC-ccccccCCCCCChhhHHH-----HcCh
Confidence                             23335556666667777777777777777777666 666666666777777666     6666


Q ss_pred             HHHHHHHHHcCCCCCC
Q 043149          145 EELKSMVRKAGGRERS  160 (344)
Q Consensus       145 ~~i~~~L~~~ga~~~~  160 (344)
                      .+|+++|+++||+++.
T Consensus       586 ~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  586 NDIAELLLKHGASVNA  601 (1143)
T ss_pred             HHHHHHHHHcCCCCCc
Confidence            6667777777666666

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.75  E-value=4.2e-18  Score=160.11  Aligned_cols=151  Identities=16%  Similarity=0.214  Sum_probs=136.7

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      |+.||..+.+ ++..+.+|.|+||-+|...+.+||+++++. +..++..|..|+||||.|+..|+..++++|+.+|++..
T Consensus        56 v~~ll~~ga~-~~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~  133 (527)
T KOG0505|consen   56 VRKLLNRGAS-PNLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLL  133 (527)
T ss_pred             HHHHhccCCC-ccccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcchhhcccccHHHHHHHHHhhhhhh
Confidence            4667777766 688999999999999999999999888886 88999999999999999999999999999999887642


Q ss_pred             -----------------------------------------------------ccccccccCCCCCcHHHHHHHCCcHHH
Q 043149           82 -----------------------------------------------------MDDILNWKNDEGNTLLHISISRSHIQI  108 (344)
Q Consensus        82 -----------------------------------------------------~~~~ln~~d~~G~TpLH~Aa~~g~~~~  108 (344)
                                                                           .+...+..+..|-|.||.|+.+|..++
T Consensus       134 avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~  213 (527)
T KOG0505|consen  134 AVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEV  213 (527)
T ss_pred             hccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHH
Confidence                                                                 334455666679999999999999999


Q ss_pred             HHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          109 VRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       109 v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      .++|++.+ .+++.+|.+|+||||.|+     ..+..+++++|+++|++.+.
T Consensus       214 ~~lLl~ag-~~~~~~D~dgWtPlHAAA-----~Wg~~~~~elL~~~ga~~d~  259 (527)
T KOG0505|consen  214 AALLLQAG-YSVNIKDYDGWTPLHAAA-----HWGQEDACELLVEHGADMDA  259 (527)
T ss_pred             HHHHHHhc-cCcccccccCCCcccHHH-----HhhhHhHHHHHHHhhcccch
Confidence            99999999 999999999999999999     99999999999999999887

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.74  E-value=9.4e-18  Score=136.49  Aligned_cols=126  Identities=17%  Similarity=0.140  Sum_probs=109.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHH
Q 043149           23 PLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISIS  102 (344)
Q Consensus        23 pLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~  102 (344)
                      -+.+|+..+....|+.||+..+.-++.+|.+|.||||.|+.+|+.+|++.|+..|++      .+.+..+|+||||.||+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn------~~a~T~~GWTPLhSAck  139 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN------KEAKTNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC------cccccccCccchhhhhc
Confidence            357899999999999999998999999999999999999999999999999987665      56789999999999999


Q ss_pred             CCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHH-cCCCCC
Q 043149          103 RSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRK-AGGRER  159 (344)
Q Consensus       103 ~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~-~ga~~~  159 (344)
                      -.+.+++..|+++| +|+|+..+..+||||+++.    ..+....+++|+. .+.++.
T Consensus       140 WnN~~va~~LLqhg-aDVnA~t~g~ltpLhlaa~----~rn~r~t~~~Ll~dryi~pg  192 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHG-ADVNAQTKGLLTPLHLAAG----NRNSRDTLELLLHDRYIHPG  192 (228)
T ss_pred             ccchhHHHHHHhcc-CcccccccccchhhHHhhc----ccchHHHHHHHhhccccChh
Confidence            99999999999999 9999999999999999993    2344555666654 344443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.74  E-value=2.1e-17  Score=164.08  Aligned_cols=139  Identities=12%  Similarity=0.102  Sum_probs=120.6

Q ss_pred             ccccccCCCCCcHHHHHHHcC---CHHHHHHHHHhCCCCcccccCCCChHHHHHHHcC--CHHHHHHHHhchhccCcccc
Q 043149           11 NLVRVQGREGVTPLHYVAEKG---NVDLLCKFLAACPESILQVTIRKETALHVAAKYD--RLEVLETMLGWLRYVNMDDI   85 (344)
Q Consensus        11 ~~~~~~d~~G~TpLh~Aa~~G---~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~   85 (344)
                      ++-..+|.+|+||||+|+..|   +.|+++.||+. |++++..|..|+||||+|+..+  +.+++++|++.|.+    +.
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~-GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~----~~  106 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSR-GVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSN----AS  106 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC-CCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCC----CC
Confidence            433488999999999999997   59999888865 8999999999999999999976  79999999997654    33


Q ss_pred             ccccCCCCCcHHHHHHH--CCcHHHHHHHHhccCcccccccC-----CCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCC
Q 043149           86 LNWKNDEGNTLLHISIS--RSHIQIVRLIVKRVRDQINARNS-----KDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRE  158 (344)
Q Consensus        86 ln~~d~~G~TpLH~Aa~--~g~~~~v~~Ll~~~~~~~~~~n~-----~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~  158 (344)
                      .+..|..+.+|||.++.  +++.+++++|+..++.+++..++     .|.+|++++.     ..++.+++++|++.|++.
T Consensus       107 ~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~-----~~~~~eIvklLi~~g~~v  181 (672)
T PHA02730        107 NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTT-----PNPRPEVLLWLLKSECYS  181 (672)
T ss_pred             cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhc-----CCCchHHHHHHHHcCCcc
Confidence            46688889999999998  89999999999855478776643     8999999999     999999999999999998


Q ss_pred             C
Q 043149          159 R  159 (344)
Q Consensus       159 ~  159 (344)
                      .
T Consensus       182 ~  182 (672)
T PHA02730        182 T  182 (672)
T ss_pred             c
Confidence            5

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.72  E-value=3.5e-17  Score=168.70  Aligned_cols=140  Identities=21%  Similarity=0.284  Sum_probs=119.1

Q ss_pred             hcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHh--------------------------------CCCCcccccCCC
Q 043149            7 DFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAA--------------------------------CPESILQVTIRK   54 (344)
Q Consensus         7 ~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~--------------------------------~~~~~~~~d~~G   54 (344)
                      .+.+..++..-+.|.||||.|+..|+.+++..+++.                                .+...+.++..|
T Consensus       461 ~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~  540 (1143)
T KOG4177|consen  461 LQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRG  540 (1143)
T ss_pred             hhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccc
Confidence            334444677777777777777777777766554432                                245667778899


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHH
Q 043149           55 ETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMV  134 (344)
Q Consensus        55 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a  134 (344)
                      .||||+||.+|+.++|++|+++|++      ++.+|+.|+||||.||..|+.+++++|+++| +++|..|.+|.|||++|
T Consensus       541 ~TpLh~A~~~g~v~~VkfLLe~gAd------v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G-A~vna~d~~g~TpL~iA  613 (1143)
T KOG4177|consen  541 YTPLHVAVHYGNVDLVKFLLEHGAD------VNAKDKLGYTPLHQAAQQGHNDIAELLLKHG-ASVNAADLDGFTPLHIA  613 (1143)
T ss_pred             cchHHHHHhcCCchHHHHhhhCCcc------ccccCCCCCChhhHHHHcChHHHHHHHHHcC-CCCCcccccCcchhHHH
Confidence            9999999999999999999996654      7889999999999999999999999999999 99999999999999999


Q ss_pred             hhhcCCCccHHHHHHHHHHcCCCC
Q 043149          135 KFHLQTKPEFEELKSMVRKAGGRE  158 (344)
Q Consensus       135 ~~~~~~~~~~~~i~~~L~~~ga~~  158 (344)
                      .     ..++.++++.|+..++.+
T Consensus       614 ~-----~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  614 V-----RLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             H-----HhcccchhhHHHhccCcc
Confidence            9     999999999999999995

>PF13962 PGG: Domain of unknown function

Probab=99.71  E-value=5.1e-18  Score=133.78  Aligned_cols=68  Identities=32%  Similarity=0.547  Sum_probs=60.3

Q ss_pred             cccchhhhhhHHHHHHHHHHHHHHHhcCCCCcccCCCCCCCCcccccccccCCCccccccc-c-CcceeeeeccchHHHH
Q 043149          190 LCITDENRNALLVVAVLIATATFQAALTPPQDLWGNRSSDIDSAANVTATSINKNRTVIQE-I-QLSPLFSLGDYYDQFI  267 (344)
Q Consensus       190 ~~~~~~t~~sllivA~LiaTvtf~a~~t~Pgg~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~-~f~~f~~~n~~~~~f~  267 (344)
                      ++|.+++++++++||+||||+||+|+++||||+||+++              ++|+|++.+ + .|.+|+++|++ + |+
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~--------------~~G~~il~~~~~~f~~F~~~nt~-a-f~   64 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD--------------DAGTPILAKKPSAFKAFLISNTI-A-FF   64 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc--------------CCCCchhccccchhhhHHHHHHH-H-HH
Confidence            46778999999999999999999999999999988762              469999966 5 99999999999 9 99


Q ss_pred             HHHHHH
Q 043149          268 SGISLF  273 (344)
Q Consensus       268 ~s~~~~  273 (344)
                      +|+.++
T Consensus        65 ~S~~~i   70 (113)
T PF13962_consen   65 SSLAAI   70 (113)
T ss_pred             HHHHHH
Confidence            999554

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.71  E-value=9.1e-17  Score=121.14  Aligned_cols=89  Identities=33%  Similarity=0.481  Sum_probs=73.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHC
Q 043149           24 LHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISR  103 (344)
Q Consensus        24 Lh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~  103 (344)
                      ||+||+.|+.++++.|++. +..++.    |+||||+|+.+|+.+++++|++.|.+      ++.+|.+|+||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINL----GNTALHYAAENGNLEIVKLLLENGAD------INSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC------TT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc------ccccCCCCCCHHHHHHHc
Confidence            7899999999999888885 444443    88899999999999999999986544      677889999999999999


Q ss_pred             CcHHHHHHHHhccCccccccc
Q 043149          104 SHIQIVRLIVKRVRDQINARN  124 (344)
Q Consensus       104 g~~~~v~~Ll~~~~~~~~~~n  124 (344)
                      |+.+++++|+++| ++++.+|
T Consensus        70 ~~~~~~~~Ll~~g-~~~~~~n   89 (89)
T PF12796_consen   70 GNLEIVKLLLEHG-ADVNIRN   89 (89)
T ss_dssp             THHHHHHHHHHTT-T-TTSS-
T ss_pred             CCHHHHHHHHHcC-CCCCCcC
Confidence            9999999999998 8888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.71  E-value=1.2e-16  Score=146.14  Aligned_cols=134  Identities=11%  Similarity=0.095  Sum_probs=111.7

Q ss_pred             CHHHHHhcCCcccccc----CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccc-cCCCChHHHHHHHcCCHHHHHHHHh
Q 043149            1 MVLRLIDFDRNLVRVQ----GREGVTPLHYVAEKGNVDLLCKFLAACPESILQV-TIRKETALHVAAKYDRLEVLETMLG   75 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~----d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~-d~~G~t~Lh~A~~~g~~~iv~~Ll~   75 (344)
                      +|+.||+.|.+ ++.+    +..|.||||+|+..|+.++++.|++. |++++.. +..|.||||+|+..++.+++++|++
T Consensus        48 ivk~LL~~GAd-iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~-GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~  125 (300)
T PHA02884         48 IIDAILKLGAD-PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY-GADVNRYAEEAKITPLYISVLHGCLKCLEILLS  125 (300)
T ss_pred             HHHHHHHCCCC-ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            47788998887 7776    46999999999999999999888875 8888876 4679999999999999999999999


Q ss_pred             chhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcC
Q 043149           76 WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG  155 (344)
Q Consensus        76 ~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~g  155 (344)
                      .|++      ++.+|.+|.||||+|+..++.+++..+....      .+..+.+|.+++.        +.+++++|++++
T Consensus       126 ~GAd------in~kd~~G~TpL~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--------n~ei~~~Lish~  185 (300)
T PHA02884        126 YGAD------INIQTNDMVTPIELALMICNNFLAFMICDNE------ISNFYKHPKKILI--------NFDILKILVSHF  185 (300)
T ss_pred             CCCC------CCCCCCCCCCHHHHHHHhCChhHHHHhcCCc------ccccccChhhhhc--------cHHHHHHHHHHH
Confidence            6654      7779999999999999999988876664322      4667788887654        468888888887


Q ss_pred             C
Q 043149          156 G  156 (344)
Q Consensus       156 a  156 (344)
                      .
T Consensus       186 v  186 (300)
T PHA02884        186 I  186 (300)
T ss_pred             H
Confidence            7

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=3.1e-16  Score=124.33  Aligned_cols=124  Identities=26%  Similarity=0.435  Sum_probs=110.3

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCC
Q 043149           15 VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGN   94 (344)
Q Consensus        15 ~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~   94 (344)
                      .+|.+|.||||+|+..|+.++++.|+..+ ...+..+..|.+|||.|+..++.+++++|++.+.      .++..+..|.
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~-~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~------~~~~~~~~~~   74 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA------DVNARDKDGN   74 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC------CccccCCCCC
Confidence            45788999999999999999999988774 4447888999999999999999999999999654      3567788999


Q ss_pred             cHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHH
Q 043149           95 TLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMV  151 (344)
Q Consensus        95 TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L  151 (344)
                      ||+|+|+..++.+++++|++++ .+.+..|..|.||++.|.     ..++.+++++|
T Consensus        75 ~~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~L  125 (126)
T cd00204          75 TPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAA-----KNGHLEVVKLL  125 (126)
T ss_pred             CHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHH-----hcCCHHHHHHh
Confidence            9999999999999999999998 889999999999999999     66777777766

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.68  E-value=4.2e-16  Score=162.52  Aligned_cols=131  Identities=21%  Similarity=0.161  Sum_probs=116.6

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCc
Q 043149           16 QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNT   95 (344)
Q Consensus        16 ~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~T   95 (344)
                      .+.++.++||.||..|+.++++.|++. +.+++..|.+|+||||+|+.+|+.+++++|+++|.      .+|.+|.+|+|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga------din~~d~~G~T  593 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKA-KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC------NVHIRDANGNT  593 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCC------CCCCcCCCCCC
Confidence            344678999999999999999998876 78899999999999999999999999999999654      47889999999


Q ss_pred             HHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149           96 LLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus        96 pLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      |||+|+..|+.+++++|++.+ ...+  ...|.++||.|+     ..++.++++.|+++|++++..
T Consensus       594 pL~~A~~~g~~~iv~~L~~~~-~~~~--~~~~~~~L~~Aa-----~~g~~~~v~~Ll~~Gadin~~  651 (823)
T PLN03192        594 ALWNAISAKHHKIFRILYHFA-SISD--PHAAGDLLCTAA-----KRNDLTAMKELLKQGLNVDSE  651 (823)
T ss_pred             HHHHHHHhCCHHHHHHHHhcC-cccC--cccCchHHHHHH-----HhCCHHHHHHHHHCCCCCCCC
Confidence            999999999999999999876 4433  356789999999     899999999999999999873

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.67  E-value=1e-16  Score=135.20  Aligned_cols=134  Identities=13%  Similarity=0.066  Sum_probs=114.6

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCC
Q 043149           13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDE   92 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~   92 (344)
                      .+..+-.+++|+.+++..-+.+.+.++.   ...+|..|..|.|||.||+.+|+..+|++|+++|+++      ......
T Consensus       122 gnevs~~p~s~~slsVhql~L~~~~~~~---~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp------~~lgk~  192 (296)
T KOG0502|consen  122 GNEVSLMPWSPLSLSVHQLHLDVVDLLV---NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP------DALGKY  192 (296)
T ss_pred             CCccccccCChhhHHHHHHHHHHHHHHh---hccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh------hhhhhh
Confidence            4556666777777777777666653332   3457889999999999999999999999999988774      335556


Q ss_pred             CCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149           93 GNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus        93 G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      ..|+|.+|+..|..++|++|+.++ +|+|..|.+|.|||-+|+     ..++.+|++.|++.||++...
T Consensus       193 resALsLAt~ggytdiV~lLL~r~-vdVNvyDwNGgTpLlyAv-----rgnhvkcve~Ll~sGAd~t~e  255 (296)
T KOG0502|consen  193 RESALSLATRGGYTDIVELLLTRE-VDVNVYDWNGGTPLLYAV-----RGNHVKCVESLLNSGADVTQE  255 (296)
T ss_pred             hhhhHhHHhcCChHHHHHHHHhcC-CCcceeccCCCceeeeee-----cCChHHHHHHHHhcCCCcccc
Confidence            779999999999999999999999 999999999999999999     899999999999999999873

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.65  E-value=1.2e-16  Score=139.74  Aligned_cols=122  Identities=20%  Similarity=0.229  Sum_probs=106.3

Q ss_pred             HHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHH
Q 043149           28 AEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQ  107 (344)
Q Consensus        28 a~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~  107 (344)
                      |+.|+.--|+.-|+..-.+.+.-|..|.+|||+||+.||..+++.|+..|++      +|..+.-..||||+|+.+|+.+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgar------vn~tnmgddtplhlaaahghrd   81 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR------VNSTNMGDDTPLHLAAAHGHRD   81 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc------cccccCCCCcchhhhhhcccHH
Confidence            4455544455556665667788889999999999999999999999997765      6667777789999999999999


Q ss_pred             HHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149          108 IVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus       108 ~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      +|+.|+++. +|+|+.|..|+||||+||     -.|+..+.+-|+..||..+.-
T Consensus        82 ivqkll~~k-advnavnehgntplhyac-----fwgydqiaedli~~ga~v~ic  129 (448)
T KOG0195|consen   82 IVQKLLSRK-ADVNAVNEHGNTPLHYAC-----FWGYDQIAEDLISCGAAVNIC  129 (448)
T ss_pred             HHHHHHHHh-cccchhhccCCCchhhhh-----hhcHHHHHHHHHhccceeeec
Confidence            999999998 999999999999999999     999999999999999998773

>PHA02741 hypothetical protein; Provisional

Probab=99.65  E-value=1.3e-15  Score=129.15  Aligned_cols=100  Identities=17%  Similarity=0.259  Sum_probs=87.3

Q ss_pred             ccccccCCCCCcHHHHHHHcCC----HHHHHHHHHhCCCCcccccC-CCChHHHHHHHcCCHHHHHHHHhchhccCcccc
Q 043149           11 NLVRVQGREGVTPLHYVAEKGN----VDLLCKFLAACPESILQVTI-RKETALHVAAKYDRLEVLETMLGWLRYVNMDDI   85 (344)
Q Consensus        11 ~~~~~~d~~G~TpLh~Aa~~G~----~~~v~~LL~~~~~~~~~~d~-~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~   85 (344)
                      ..++.+|..|.||||+|+..|+    .++++.|+.. +.+++.+|. .|+||||+|+..++.+++++|++.     .+..
T Consensus        51 a~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~-gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~-----~g~~  124 (169)
T PHA02741         51 AALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL-GADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQ-----PGID  124 (169)
T ss_pred             hhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc-CCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhC-----CCCC
Confidence            4588899999999999999999    4777777764 778888885 899999999999999999999973     1234


Q ss_pred             ccccCCCCCcHHHHHHHCCcHHHHHHHHhcc
Q 043149           86 LNWKNDEGNTLLHISISRSHIQIVRLIVKRV  116 (344)
Q Consensus        86 ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~  116 (344)
                      ++.+|.+|.||||+|+..++.++++.|++.+
T Consensus       125 ~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741        125 LHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            6788999999999999999999999999876

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.65  E-value=2.1e-16  Score=153.73  Aligned_cols=132  Identities=24%  Similarity=0.278  Sum_probs=121.4

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCcccccccc
Q 043149           10 RNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWK   89 (344)
Q Consensus        10 ~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~   89 (344)
                      ++..+.+|.+|.|.||.||.+|+.++++.|++. -..++..|..|.+|||+|+..|+.+++++++..+      ..+|..
T Consensus        39 sds~n~qd~~gfTalhha~Lng~~~is~llle~-ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~------d~~na~  111 (854)
T KOG0507|consen   39 SDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY-EALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQT------DILNAV  111 (854)
T ss_pred             CccccccCccchhHHHHHHhcCchHHHHHHhcc-hhhhhhhhccCcceEEehhhcCcchHHHHHHhcc------cCCCcc
Confidence            455788999999999999999999999777765 6677888899999999999999999999999853      558899


Q ss_pred             CCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149           90 NDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus        90 d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                      ..+|.||||+|+++|+.+++.+|++++ ++.-.+|+.++|++++|+     +.+..+++.+|++.
T Consensus       112 ~~e~~tplhlaaqhgh~dvv~~Ll~~~-adp~i~nns~~t~ldlA~-----qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  112 NIENETPLHLAAQHGHLEVVFYLLKKN-ADPFIRNNSKETVLDLAS-----RFGRAEVVQMLLQK  170 (854)
T ss_pred             cccCcCccchhhhhcchHHHHHHHhcC-CCccccCcccccHHHHHH-----HhhhhHHHHHHhhh
Confidence            999999999999999999999999999 999999999999999999     89999999999887

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.64  E-value=3.9e-16  Score=130.13  Aligned_cols=104  Identities=17%  Similarity=0.129  Sum_probs=88.3

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHH---HHHHHHHhCCCCccccc-CCCChHHHHHHHcCCHHHHHHHHhchhccCccccc
Q 043149           11 NLVRVQGREGVTPLHYVAEKGNVD---LLCKFLAACPESILQVT-IRKETALHVAAKYDRLEVLETMLGWLRYVNMDDIL   86 (344)
Q Consensus        11 ~~~~~~d~~G~TpLh~Aa~~G~~~---~v~~LL~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~l   86 (344)
                      .+++.+|.+|.||||+|+..|+.+   +++.|+.. +.+++.+| ..|+||||+|++.++.+++++|++.     .+..+
T Consensus        46 ~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~-----~g~d~  119 (154)
T PHA02736         46 YLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW-GADINGKERVFGNTPLHIAVYTQNYELATWLCNQ-----PGVNM  119 (154)
T ss_pred             HHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc-CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhC-----CCCCC
Confidence            345667999999999999999875   56566654 78888888 4899999999999999999999973     12347


Q ss_pred             cccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccc
Q 043149           87 NWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQIN  121 (344)
Q Consensus        87 n~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~  121 (344)
                      +.+|..|.||||+|+..|+.+++++|++++ ++.+
T Consensus       120 n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g-a~~~  153 (154)
T PHA02736        120 EILNYAFKTPYYVACERHDAKMMNILRAKG-AQCK  153 (154)
T ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence            889999999999999999999999999998 6654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.64  E-value=1.8e-15  Score=156.48  Aligned_cols=147  Identities=18%  Similarity=0.208  Sum_probs=110.4

Q ss_pred             HHHHHhcC-CccccccCCCCCcHHH-HHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhc
Q 043149            2 VLRLIDFD-RNLVRVQGREGVTPLH-YVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY   79 (344)
Q Consensus         2 v~~LL~~~-~~~~~~~d~~G~TpLh-~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~   79 (344)
                      |+.+|+.. +..++..|..|+|||| .|+..++.++++.|+.. +.    .+..|+||||.|+.. ..+.++.++.+...
T Consensus        33 v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~-g~----~~~~G~T~Lh~A~~~-~~~~v~~ll~~l~~  106 (743)
T TIGR00870        33 VYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNL-SC----RGAVGDTLLHAISLE-YVDAVEAILLHLLA  106 (743)
T ss_pred             HHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhC-CC----CCCcChHHHHHHHhc-cHHHHHHHHHHHhh
Confidence            56677662 3447888999999999 88888888988766665 43    677899999999973 33334433333221


Q ss_pred             cCcc----cccc----ccCCCCCcHHHHHHHCCcHHHHHHHHhccCccccccc--------------CCCCCHHHHHhhh
Q 043149           80 VNMD----DILN----WKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN--------------SKDNTAMDMVKFH  137 (344)
Q Consensus        80 ~~~~----~~ln----~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n--------------~~G~Tpl~~a~~~  137 (344)
                      ....    ...+    ..+..|.||||+|+..|+.+++++|+++| ++++.++              ..|+||+|+|+  
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~G-Adv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa--  183 (743)
T TIGR00870       107 AFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERG-ASVPARACGDFFVKSQGVDSFYHGESPLNAAA--  183 (743)
T ss_pred             cccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCcCcCCchhhcCCCCCcccccccHHHHHH--
Confidence            1110    0112    23357999999999999999999999999 9998764              36999999999  


Q ss_pred             cCCCccHHHHHHHHHHcCCCCCC
Q 043149          138 LQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       138 ~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                         ..++.+++++|++.|++++.
T Consensus       184 ---~~~~~~iv~lLl~~gadin~  203 (743)
T TIGR00870       184 ---CLGSPSIVALLSEDPADILT  203 (743)
T ss_pred             ---HhCCHHHHHHHhcCCcchhh
Confidence               88899999999999998876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.63  E-value=2.2e-15  Score=113.55  Aligned_cols=87  Identities=28%  Similarity=0.414  Sum_probs=78.2

Q ss_pred             HHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhh
Q 043149           58 LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFH  137 (344)
Q Consensus        58 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~  137 (344)
                      ||+|++.|+.+++++|++.+.+      ++.    |+||||+|+..|+.+++++|++++ ++++.+|..|+||+|+|+  
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~------~~~----~~~~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~--   67 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD------INL----GNTALHYAAENGNLEIVKLLLENG-ADINSQDKNGNTALHYAA--   67 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST------TTS----SSBHHHHHHHTTTHHHHHHHHHTT-TCTT-BSTTSSBHHHHHH--
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC------CCC----CCCHHHHHHHcCCHHHHHHHHHhc-ccccccCCCCCCHHHHHH--
Confidence            7999999999999999996533      222    899999999999999999999999 999999999999999999  


Q ss_pred             cCCCccHHHHHHHHHHcCCCCCC
Q 043149          138 LQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       138 ~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                         ..++.+++++|+++|++++.
T Consensus        68 ---~~~~~~~~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   68 ---ENGNLEIVKLLLEHGADVNI   87 (89)
T ss_dssp             ---HTTHHHHHHHHHHTTT-TTS
T ss_pred             ---HcCCHHHHHHHHHcCCCCCC
Confidence               89999999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02792 ankyrin-like protein; Provisional

Probab=99.63  E-value=1.4e-15  Score=149.84  Aligned_cols=135  Identities=11%  Similarity=0.143  Sum_probs=117.2

Q ss_pred             ccccCCCCCcHHHH-HHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHH-cCCHHHHHHHHhchhccCc--------
Q 043149           13 VRVQGREGVTPLHY-VAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAK-YDRLEVLETMLGWLRYVNM--------   82 (344)
Q Consensus        13 ~~~~d~~G~TpLh~-Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~-~g~~~iv~~Ll~~~~~~~~--------   82 (344)
                      ++..+-+|.+|+|+ |...|+.|+|+.|+.+ |++++..+..|.+++|+|+. .++.|++++|++.|++.+.        
T Consensus        64 ~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~-GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~  142 (631)
T PHA02792         64 VDYKNINDFDIFEYLCSDNIDIELLKLLISK-GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKI  142 (631)
T ss_pred             CCcCccCCccHHHHHHHhcccHHHHHHHHHc-CCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcch
Confidence            55677888889985 5677999999999986 89999999999999999966 6999999999999976421        


Q ss_pred             ----------------------cccccccCCCCCcHHHHHHHCC-------cHHHHHHHHhccCcccccccCCCCCHHHH
Q 043149           83 ----------------------DDILNWKNDEGNTLLHISISRS-------HIQIVRLIVKRVRDQINARNSKDNTAMDM  133 (344)
Q Consensus        83 ----------------------~~~ln~~d~~G~TpLH~Aa~~g-------~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~  133 (344)
                                            +-.+|.+|..|+||||+|+..+       +.+++++|+++| ++++.+|..|.||||+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g-~~~~~~d~~g~t~l~~  221 (631)
T PHA02792        143 IIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHE-KEMRYYTYREHTTLYY  221 (631)
T ss_pred             hhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCC-CCcCccCCCCChHHHH
Confidence                                  1246788889999999999999       899999999999 9999999999999999


Q ss_pred             HhhhcCCCcc--HHHHHHHHHHc
Q 043149          134 VKFHLQTKPE--FEELKSMVRKA  154 (344)
Q Consensus       134 a~~~~~~~~~--~~~i~~~L~~~  154 (344)
                      |+     ...  ..|++++|.+.
T Consensus       222 ~~-----~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        222 YV-----DKCDIKREIFDALFDS  239 (631)
T ss_pred             HH-----HcccchHHHHHHHHhc
Confidence            99     555  78899999874

>PHA02792 ankyrin-like protein; Provisional

Probab=99.63  E-value=3.6e-15  Score=146.86  Aligned_cols=148  Identities=9%  Similarity=0.121  Sum_probs=119.8

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCC--ChHHHHHHHcCCHH---HHHHHHh
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK--ETALHVAAKYDRLE---VLETMLG   75 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G--~t~Lh~A~~~g~~~---iv~~Ll~   75 (344)
                      +++.|++.|.+..   ...+..++|.||..|+.++++.|++. |++++..|.+|  .||||.|+.....+   ++++|++
T Consensus       323 iIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~-GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs  398 (631)
T PHA02792        323 VIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKN-GNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP  398 (631)
T ss_pred             HHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHc-CCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh
Confidence            3677888888743   23367779999999999999888876 78898888775  69999988776654   5788888


Q ss_pred             chhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCC-----CccHHHHHHH
Q 043149           76 WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQT-----KPEFEELKSM  150 (344)
Q Consensus        76 ~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~-----~~~~~~i~~~  150 (344)
                      +|++      +|.+|..|+||||.|+..++.+++++|+++| ++++.+|..|+||+++|.....+     .....+++++
T Consensus       399 ~GAD------IN~kD~~G~TPLh~Aa~~~n~eivelLLs~G-ADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~l  471 (631)
T PHA02792        399 YIDD------INKIDKHGRSILYYCIESHSVSLVEWLIDNG-ADINITTKYGSTCIGICVILAHACIPEIAELYIKILEI  471 (631)
T ss_pred             cCCc------cccccccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            6654      7889999999999999999999999999999 99999999999999999732111     1234678999


Q ss_pred             HHHcCCCCC
Q 043149          151 VRKAGGRER  159 (344)
Q Consensus       151 L~~~ga~~~  159 (344)
                      |+++|.++.
T Consensus       472 LLs~~p~i~  480 (631)
T PHA02792        472 ILSKLPTIE  480 (631)
T ss_pred             HHhcCCChh
Confidence            999987755

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.62  E-value=8.4e-16  Score=144.76  Aligned_cols=127  Identities=28%  Similarity=0.324  Sum_probs=112.2

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC------------------------------------
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACP------------------------------------   44 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~------------------------------------   44 (344)
                      ||+.|++.+.+ ++.+|..|+||||.|+..|+..+++.++...-                                    
T Consensus        88 ~v~~l~e~ga~-Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~i  166 (527)
T KOG0505|consen   88 MVKFLVENGAN-VNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDI  166 (527)
T ss_pred             HHHHHHHhcCC-ccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccH
Confidence            68899999998 99999999999999999999999988875411                                    


Q ss_pred             ----------------------CCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHH
Q 043149           45 ----------------------ESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISIS  102 (344)
Q Consensus        45 ----------------------~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~  102 (344)
                                            ...+..+..|.|.||+|+.+|..++.++|++.|..      ++.+|.+|+||||.|+.
T Consensus       167 ea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~------~~~~D~dgWtPlHAAA~  240 (527)
T KOG0505|consen  167 EAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS------VNIKDYDGWTPLHAAAH  240 (527)
T ss_pred             HHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC------cccccccCCCcccHHHH
Confidence                                  12222344689999999999999999999996554      78899999999999999


Q ss_pred             CCcHHHHHHHHhccCcccccccCCCCCHHHHHh
Q 043149          103 RSHIQIVRLIVKRVRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus       103 ~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~  135 (344)
                      -|+.+++++|++++ ++++.++..|+||+++|.
T Consensus       241 Wg~~~~~elL~~~g-a~~d~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  241 WGQEDACELLVEHG-ADMDAKTKMGETPLDVAD  272 (527)
T ss_pred             hhhHhHHHHHHHhh-cccchhhhcCCCCccchh
Confidence            99999999999999 999999999999999998

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.61  E-value=1.6e-15  Score=156.90  Aligned_cols=126  Identities=19%  Similarity=0.176  Sum_probs=104.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccc--------------CCCChHHHHHHHcCCHHHHHHHHhchhccCc
Q 043149           17 GREGVTPLHYVAEKGNVDLLCKFLAACPESILQVT--------------IRKETALHVAAKYDRLEVLETMLGWLRYVNM   82 (344)
Q Consensus        17 d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d--------------~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~   82 (344)
                      +..|.||||+||.+|+.++|+.|+++ +++++.++              ..|+||||.|+..|+.+++++|+++++    
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~-GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga----  199 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLER-GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA----  199 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc----
Confidence            35799999999999999999888886 66666432              358999999999999999999999654    


Q ss_pred             cccccccCCCCCcHHHHHHHCC---------cHHHHHHHHhccCcc---c----ccccCCCCCHHHHHhhhcCCCccHHH
Q 043149           83 DDILNWKNDEGNTLLHISISRS---------HIQIVRLIVKRVRDQ---I----NARNSKDNTAMDMVKFHLQTKPEFEE  146 (344)
Q Consensus        83 ~~~ln~~d~~G~TpLH~Aa~~g---------~~~~v~~Ll~~~~~~---~----~~~n~~G~Tpl~~a~~~~~~~~~~~~  146 (344)
                        ++|.+|..|+||||+|+..+         ...+.+.++..+ +.   .    +.+|++|.||+|+|+     ..++.+
T Consensus       200 --din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll-~~~~~~~el~~i~N~~g~TPL~~A~-----~~g~~~  271 (743)
T TIGR00870       200 --DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLL-DKLRDSKELEVILNHQGLTPLKLAA-----KEGRIV  271 (743)
T ss_pred             --chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-hccCChHhhhhhcCCCCCCchhhhh-----hcCCcc
Confidence              47889999999999999987         234556666554 33   2    678999999999999     889999


Q ss_pred             HHHHHHHcC
Q 043149          147 LKSMVRKAG  155 (344)
Q Consensus       147 i~~~L~~~g  155 (344)
                      ++++|++.+
T Consensus       272 l~~lLL~~~  280 (743)
T TIGR00870       272 LFRLKLAIK  280 (743)
T ss_pred             HHHHHHHHH
Confidence            999999854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.58  E-value=4.1e-14  Score=123.64  Aligned_cols=133  Identities=29%  Similarity=0.344  Sum_probs=119.5

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCC-----HHHHHHHHhchhccCcccccc
Q 043149           13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDR-----LEVLETMLGWLRYVNMDDILN   87 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~-----~~iv~~Ll~~~~~~~~~~~ln   87 (344)
                      ....+..+.+++|.++..|..++++.++.. +..++.+|..|.||||+|+.+++     .+++++|++.+.+   ....+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~---~~~~~  141 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD---LDVNN  141 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHc-CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC---CCCcc
Confidence            445667799999999999999999777776 66669999999999999999999     9999999997651   12467


Q ss_pred             ccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcC
Q 043149           88 WKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG  155 (344)
Q Consensus        88 ~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~g  155 (344)
                      .+|..|+||||+|+..|+.+++++|++.+ ++++.+|..|.|+++.++     ..++.++...+.+.+
T Consensus       142 ~~~~~g~tpl~~A~~~~~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~-----~~~~~~~~~~l~~~~  203 (235)
T COG0666         142 LRDEDGNTPLHWAALNGDADIVELLLEAG-ADPNSRNSYGVTALDPAA-----KNGRIELVKLLLDKG  203 (235)
T ss_pred             ccCCCCCchhHHHHHcCchHHHHHHHhcC-CCCcccccCCCcchhhhc-----ccchHHHHHHHHhcC
Confidence            78999999999999999999999999999 999999999999999999     899999999999986

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.55  E-value=2.2e-14  Score=141.33  Aligned_cols=140  Identities=19%  Similarity=0.193  Sum_probs=119.5

Q ss_pred             HHHHHhcCCcccccc----CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccc---------c--------------CCC
Q 043149            2 VLRLIDFDRNLVRVQ----GREGVTPLHYVAEKGNVDLLCKFLAACPESILQV---------T--------------IRK   54 (344)
Q Consensus         2 v~~LL~~~~~~~~~~----d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~---------d--------------~~G   54 (344)
                      ++.||+.-|.+++..    ...|.||||+|+.+-+.++|+.|++. +++++.+         |              .-|
T Consensus       162 a~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~-gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfG  240 (782)
T KOG3676|consen  162 ARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAA-GADVHARACGAFFCPDDQKASRKSTNYTGYFYFG  240 (782)
T ss_pred             HHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHc-CCchhhHhhccccCcccccccccccCCcceeeec
Confidence            567777777666543    34899999999999999999988876 4443332         1              247


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcc--cccccCCCCCHHH
Q 043149           55 ETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQ--INARNSKDNTAMD  132 (344)
Q Consensus        55 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~--~~~~n~~G~Tpl~  132 (344)
                      +.||..||--++++++++|+++++      +++.+|.+|||.||..+..-..++..++++.+ ++  ...+|++|.|||.
T Consensus       241 EyPLSfAAC~nq~eivrlLl~~gA------d~~aqDS~GNTVLH~lVi~~~~~My~~~L~~g-a~~l~~v~N~qgLTPLt  313 (782)
T KOG3676|consen  241 EYPLSFAACTNQPEIVRLLLAHGA------DPNAQDSNGNTVLHMLVIHFVTEMYDLALELG-ANALEHVRNNQGLTPLT  313 (782)
T ss_pred             cCchHHHHHcCCHHHHHHHHhcCC------CCCccccCCChHHHHHHHHHHHHHHHHHHhcC-CCccccccccCCCChHH
Confidence            899999999999999999999654      47889999999999999998999999999999 88  8899999999999


Q ss_pred             HHhhhcCCCccHHHHHHHHHHc
Q 043149          133 MVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus       133 ~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                      +|+     +.+..++.+.+++.
T Consensus       314 LAa-----klGk~emf~~ile~  330 (782)
T KOG3676|consen  314 LAA-----KLGKKEMFQHILER  330 (782)
T ss_pred             HHH-----HhhhHHHHHHHHHh
Confidence            999     89999999888877

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.55  E-value=9.7e-15  Score=142.27  Aligned_cols=146  Identities=23%  Similarity=0.284  Sum_probs=105.2

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      ++.||+..+ ++.+.|..|.+|||+|+..|+.|+++.+|.+ .+..+..+..|+||||.||.+||.++|.+|+.+++++.
T Consensus        65 s~llle~ea-~ldl~d~kg~~plhlaaw~g~~e~vkmll~q-~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~  142 (854)
T KOG0507|consen   65 SKLLLDYEA-LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQ-TDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF  142 (854)
T ss_pred             HHHHhcchh-hhhhhhccCcceEEehhhcCcchHHHHHHhc-ccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc
Confidence            344444444 4778888888888888888888888887776 47778888888888888888888888888888776643


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhcc-------CcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRV-------RDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~-------~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                            ..|+.+.|+|-+|++.|..++++.|++..       +..-..++-.+-+|+|+|.     ++++.++++.|+++
T Consensus       143 ------i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaa-----kngh~~~~~~ll~a  211 (854)
T KOG0507|consen  143 ------IRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAA-----KNGHVECMQALLEA  211 (854)
T ss_pred             ------ccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhh-----hcchHHHHHHHHhc
Confidence                  35667777777777777777777776542       0112233445667777777     77777777777777


Q ss_pred             CCCCCC
Q 043149          155 GGRERS  160 (344)
Q Consensus       155 ga~~~~  160 (344)
                      |.+++.
T Consensus       212 g~din~  217 (854)
T KOG0507|consen  212 GFDINY  217 (854)
T ss_pred             CCCccc
Confidence            777765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.54  E-value=4e-14  Score=103.63  Aligned_cols=105  Identities=17%  Similarity=0.260  Sum_probs=91.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHH
Q 043149           22 TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISI  101 (344)
Q Consensus        22 TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa  101 (344)
                      --+.|++++|..+-|+..+.+ +.+++.. ..|++|||+|+-+|+.+++++|+..|++      ++.+|+.|-|||..|+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~-g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~------i~~kDKygITPLLsAv   75 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNE-GLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGAN------IQDKDKYGITPLLSAV   75 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHc-cccHHHH-hCCcccchHhhhcchHHHHHHHHHhccc------cCCccccCCcHHHHHH
Confidence            346789999999999998887 4555533 3899999999999999999999996554      7889999999999999


Q ss_pred             HCCcHHHHHHHHhccCcccccccCCCCCHHHHHh
Q 043149          102 SRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus       102 ~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~  135 (344)
                      ..||.++|++|++.| ++...+..+|.+.+..+.
T Consensus        76 wEGH~~cVklLL~~G-Adrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNG-ADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHhhHHHHHHHHHcC-cccceeCCCchhHHhhcc
Confidence            999999999999999 999999999999887655

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.51  E-value=1e-13  Score=136.69  Aligned_cols=139  Identities=22%  Similarity=0.260  Sum_probs=117.5

Q ss_pred             ccccCCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCcccc----cCCCChHHHHHHHcCCHHHHHHHHhchhccCccc-
Q 043149           13 VRVQGREGVTPLHYVAEK---GNVDLLCKFLAACPESILQV----TIRKETALHVAAKYDRLEVLETMLGWLRYVNMDD-   84 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~---G~~~~v~~LL~~~~~~~~~~----d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~-   84 (344)
                      ++.+...|.|.||.|..+   ++.++++.||+..|..++..    ...|+||||+|+.+.+.++|++|++.|++++..+ 
T Consensus       136 ~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~  215 (782)
T KOG3676|consen  136 LNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARAC  215 (782)
T ss_pred             cccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhh
Confidence            555678899999999874   66689999999888766543    3579999999999999999999999999876322 


Q ss_pred             --cccccC--------------CCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHH
Q 043149           85 --ILNWKN--------------DEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELK  148 (344)
Q Consensus        85 --~ln~~d--------------~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~  148 (344)
                        -....|              +.|..||.+||-.++.+++++|++++ +|++++|..|+|.||..+     .....++.
T Consensus       216 G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~g-Ad~~aqDS~GNTVLH~lV-----i~~~~~My  289 (782)
T KOG3676|consen  216 GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHG-ADPNAQDSNGNTVLHMLV-----IHFVTEMY  289 (782)
T ss_pred             ccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcC-CCCCccccCCChHHHHHH-----HHHHHHHH
Confidence              111111              25789999999999999999999999 999999999999999999     77788999


Q ss_pred             HHHHHcCCC
Q 043149          149 SMVRKAGGR  157 (344)
Q Consensus       149 ~~L~~~ga~  157 (344)
                      .+++++|++
T Consensus       290 ~~~L~~ga~  298 (782)
T KOG3676|consen  290 DLALELGAN  298 (782)
T ss_pred             HHHHhcCCC
Confidence            999999999

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.41  E-value=9.3e-13  Score=134.04  Aligned_cols=106  Identities=14%  Similarity=0.132  Sum_probs=94.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHH
Q 043149           22 TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISI  101 (344)
Q Consensus        22 TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa  101 (344)
                      +.|+.||..|+.++++.|+.. +.+++.+|.+|+||||+|+.+|+.+++++|++.|++      ++.+|.+|+||||+|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad------vn~~d~~G~TpLh~A~  156 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD------PTLLDKDGKTPLELAE  156 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHH
Confidence            358899999999999888875 788999999999999999999999999999996544      6789999999999999


Q ss_pred             HCCcHHHHHHHHhc-------cCcccccccCCCCCHHHHHh
Q 043149          102 SRSHIQIVRLIVKR-------VRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus       102 ~~g~~~~v~~Ll~~-------~~~~~~~~n~~G~Tpl~~a~  135 (344)
                      ..|+.+++++|+++       + ++.+..+..|.+|+....
T Consensus       157 ~~g~~~iv~~Ll~~~~~~~~~g-a~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        157 ENGFREVVQLLSRHSQCHFELG-ANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HCCcHHHHHHHHhCCCcccccC-CCCCccccCCCCccchhh
Confidence            99999999999998       6 788888888888776554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.39  E-value=3.4e-13  Score=92.42  Aligned_cols=56  Identities=27%  Similarity=0.339  Sum_probs=22.9

Q ss_pred             HHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHH
Q 043149            5 LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVA   61 (344)
Q Consensus         5 LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A   61 (344)
                      ||+.++..++.+|..|.||||+||..|+.++++.|+ +.+.+++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            345554556666666666666666666666666666 44666666666666666665

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=1.6e-12  Score=122.10  Aligned_cols=125  Identities=18%  Similarity=0.196  Sum_probs=104.1

Q ss_pred             CCcHH---HHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcH
Q 043149           20 GVTPL---HYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTL   96 (344)
Q Consensus        20 G~TpL---h~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~Tp   96 (344)
                      ...||   .-|+..|..|+|+.++.+ -.+....|..|-|+||-|+..||.+||++|++.|      ..+|..|.+||||
T Consensus       547 rfnPLaLLLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~g------anVNa~DSdGWTP  619 (752)
T KOG0515|consen  547 RFNPLALLLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFG------ANVNAADSDGWTP  619 (752)
T ss_pred             ecchHHHHHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcC------CcccCccCCCCch
Confidence            34555   448899999999999987 4566777889999999999999999999999954      4589999999999


Q ss_pred             HHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149           97 LHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus        97 LH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                      ||+|+..++..+++.|++.|.+-.-..=.++.||.+-+...   +.|+..|..+|...
T Consensus       620 LHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~---eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  620 LHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEM---EEGYDQCSQYLYGV  674 (752)
T ss_pred             hhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchh---hhhHHHHHHHHHHH
Confidence            99999999999999999999443444557889998876532   66788999998754

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.38  E-value=1.9e-12  Score=116.98  Aligned_cols=92  Identities=24%  Similarity=0.336  Sum_probs=82.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHH
Q 043149           18 REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLL   97 (344)
Q Consensus        18 ~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpL   97 (344)
                      ..|.|+|++|+.+|.+++|+.|| .|++++|.+|.+|.|+|..||++||.|++++|+..     ..+++...|.+|.|+|
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LL-acgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~-----p~cd~sLtD~DgSTAl  411 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALL-ACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV-----PSCDISLTDVDGSTAL  411 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHH-HccCCCccccCCccHHHhhhhhhChHHHHHHHhcc-----CcccceeecCCCchhh
Confidence            46889999999999999997666 57999999999999999999999999999999974     4567888999999999


Q ss_pred             HHHHHCCcHHHHHHHHhc
Q 043149           98 HISISRSHIQIVRLIVKR  115 (344)
Q Consensus        98 H~Aa~~g~~~~v~~Ll~~  115 (344)
                      .+|-..|+.++.-+|-.+
T Consensus       412 ~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  412 SIALEAGHREIAVMLYAH  429 (452)
T ss_pred             hhHHhcCchHHHHHHHHH
Confidence            999999999999888655

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.37  E-value=1.6e-12  Score=88.40  Aligned_cols=53  Identities=30%  Similarity=0.485  Sum_probs=22.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHH
Q 043149           20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETM   73 (344)
Q Consensus        20 G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~L   73 (344)
                      |+||||+||..|+.++++.|++. +.+++.+|.+|+||||+|+.+|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34444444444444444444443 334444444444444444444444444444

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.36  E-value=1.9e-12  Score=87.99  Aligned_cols=54  Identities=30%  Similarity=0.474  Sum_probs=40.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHH
Q 043149           54 KETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIV  113 (344)
Q Consensus        54 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll  113 (344)
                      |+||||+|++.|+.+++++|++.+.      .+|.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~------din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGA------DINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTS------GTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            6889999999999999999988543      37778889999999999999999998885

...

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.36  E-value=7.7e-12  Score=98.81  Aligned_cols=99  Identities=26%  Similarity=0.413  Sum_probs=89.5

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCC
Q 043149           50 VTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT  129 (344)
Q Consensus        50 ~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~T  129 (344)
                      .|.+|.||||.|++.++.+++++|++.+.+      .+..|..|.||||.|+..++.++++.|++.+ .+++..|..|.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~------~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~   75 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD------VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNT   75 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC------CCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCC
Confidence            467899999999999999999999996543      3778999999999999999999999999998 889999999999


Q ss_pred             HHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          130 AMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       130 pl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      |+|.|+     ..++.+++++|++.|.+...
T Consensus        76 ~l~~a~-----~~~~~~~~~~L~~~~~~~~~  101 (126)
T cd00204          76 PLHLAA-----RNGNLDVVKLLLKHGADVNA  101 (126)
T ss_pred             HHHHHH-----HcCcHHHHHHHHHcCCCCcc
Confidence            999999     88889999999999855554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.1e-12  Score=89.86  Aligned_cols=50  Identities=26%  Similarity=0.385  Sum_probs=26.7

Q ss_pred             ccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHH
Q 043149           84 DILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMV  134 (344)
Q Consensus        84 ~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a  134 (344)
                      ..++.+|..|+||||+|+..|+.+++++|++.+ ++++.+|.+|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            446777778888888888888888888888666 78888888888888775

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.33  E-value=8e-12  Score=109.67  Aligned_cols=123  Identities=19%  Similarity=0.144  Sum_probs=109.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHH
Q 043149           19 EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLH   98 (344)
Q Consensus        19 ~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH   98 (344)
                      .-..||..+.-.|.++-...||.. -..++.+|.+|.++|..|+..|+.++|+.|++.|++++.     .++..+.||||
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~-----~qhg~~YTpLm   84 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVND-----KQHGTLYTPLM   84 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCc-----ccccccccHHH
Confidence            457899999999999999999986 566899999999999999999999999999998877542     26788999999


Q ss_pred             HHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHH
Q 043149           99 ISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRK  153 (344)
Q Consensus        99 ~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~  153 (344)
                      +|+..|+.++.++|++.| +.....|.-|+|+-..|+     -.|+.+++.++-.
T Consensus        85 FAALSGn~dvcrllldaG-a~~~~vNsvgrTAaqmAA-----FVG~H~CV~iINN  133 (396)
T KOG1710|consen   85 FAALSGNQDVCRLLLDAG-ARMYLVNSVGRTAAQMAA-----FVGHHECVAIINN  133 (396)
T ss_pred             HHHHcCCchHHHHHHhcc-CccccccchhhhHHHHHH-----HhcchHHHHHHhc
Confidence            999999999999999999 999999999999999999     7777787766543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.33  E-value=6.5e-12  Score=109.62  Aligned_cols=107  Identities=25%  Similarity=0.282  Sum_probs=95.2

Q ss_pred             HHHHhcCCccccccCCCCCcHHHHHHHcCC-----HHHHHHHHHhCC--CCcccccCCCChHHHHHHHcCCHHHHHHHHh
Q 043149            3 LRLIDFDRNLVRVQGREGVTPLHYVAEKGN-----VDLLCKFLAACP--ESILQVTIRKETALHVAAKYDRLEVLETMLG   75 (344)
Q Consensus         3 ~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~-----~~~v~~LL~~~~--~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~   75 (344)
                      ..++..+.+ ++.+|.+|.||||+|+..|+     .++++.||+...  ...+..|.+|.||||+|+..|+.++++.|++
T Consensus        90 ~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~  168 (235)
T COG0666          90 KLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLE  168 (235)
T ss_pred             HHHHHcCCC-cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHh
Confidence            466777777 59999999999999999999     999999999866  4777789999999999999999999999999


Q ss_pred             chhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhcc
Q 043149           76 WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRV  116 (344)
Q Consensus        76 ~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~  116 (344)
                      .+++      ++..+..|.|++|+|+..++.++++.++..+
T Consensus       169 ~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         169 AGAD------PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCC------CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            6544      5567999999999999999999999999864

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.30  E-value=9.4e-12  Score=91.28  Aligned_cols=91  Identities=11%  Similarity=0.106  Sum_probs=81.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhh
Q 043149           57 ALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKF  136 (344)
Q Consensus        57 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~  136 (344)
                      -+.|++++|..+-|+..+..|-+      +|.. ..|++|||+|+-.|+.+++++|+..| ++++.+|+.|-|||--|+ 
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~n------Vn~~-~ggR~plhyAAD~GQl~ilefli~iG-A~i~~kDKygITPLLsAv-   75 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLN------VNEI-YGGRTPLHYAADYGQLSILEFLISIG-ANIQDKDKYGITPLLSAV-   75 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcccc------HHHH-hCCcccchHhhhcchHHHHHHHHHhc-cccCCccccCCcHHHHHH-
Confidence            46789999999999988775422      3433 37999999999999999999999999 999999999999999999 


Q ss_pred             hcCCCccHHHHHHHHHHcCCCCCC
Q 043149          137 HLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       137 ~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                          -.++.+++++|++.||+...
T Consensus        76 ----wEGH~~cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   76 ----WEGHRDCVKLLLQNGADRTI   95 (117)
T ss_pred             ----HHhhHHHHHHHHHcCcccce
Confidence                89999999999999999877

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.30  E-value=1.1e-11  Score=126.35  Aligned_cols=92  Identities=18%  Similarity=0.281  Sum_probs=84.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhh
Q 043149           57 ALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKF  136 (344)
Q Consensus        57 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~  136 (344)
                      .|+.|+..|+.++++.|++.|.+      +|.+|.+|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+ 
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad------in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G-advn~~d~~G~TpLh~A~-  156 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD------PNCRDYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAE-  156 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH-
Confidence            48889999999999999996544      6789999999999999999999999999999 999999999999999999 


Q ss_pred             hcCCCccHHHHHHHHHHc-------CCCCCC
Q 043149          137 HLQTKPEFEELKSMVRKA-------GGRERS  160 (344)
Q Consensus       137 ~~~~~~~~~~i~~~L~~~-------ga~~~~  160 (344)
                          ..++.+++++|+++       |++...
T Consensus       157 ----~~g~~~iv~~Ll~~~~~~~~~ga~~~~  183 (664)
T PTZ00322        157 ----ENGFREVVQLLSRHSQCHFELGANAKP  183 (664)
T ss_pred             ----HCCcHHHHHHHHhCCCcccccCCCCCc
Confidence                88999999999998       666655

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.18  E-value=1.9e-11  Score=123.32  Aligned_cols=132  Identities=16%  Similarity=0.183  Sum_probs=115.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHH
Q 043149           18 REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLL   97 (344)
Q Consensus        18 ~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpL   97 (344)
                      .+-.|+|-.||..|+.|.+++|+.+ +.+++.+|+.|.+||.+|+..||..+|+.|+++-++.     --..|+.+.|+|
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~r-ganiehrdkkgf~plImaatagh~tvV~~llk~ha~v-----eaQsdrtkdt~l  828 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVR-GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV-----EAQSDRTKDTML  828 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHh-cccccccccccchhhhhhcccCchHHHHHHHhhhhhh-----hhhcccccCceE
Confidence            3567899999999999999777776 7889999999999999999999999999999854432     223678899999


Q ss_pred             HHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149           98 HISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus        98 H~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      .+||..|..++|++||..+ ++...+|-...||+.+|.     ..++.+|+.+|+.+|+.++..
T Consensus       829 Slacsggr~~vvelLl~~g-ankehrnvsDytPlsla~-----Sggy~~iI~~llS~GseInSr  886 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAG-ANKEHRNVSDYTPLSLAR-----SGGYTKIIHALLSSGSEINSR  886 (2131)
T ss_pred             EEecCCCcchHHHHHHHhh-ccccccchhhcCchhhhc-----CcchHHHHHHHhhcccccccc
Confidence            9999999999999999999 999999999999999998     889999999999999888873

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.17  E-value=2.8e-11  Score=122.13  Aligned_cols=149  Identities=19%  Similarity=0.225  Sum_probs=128.8

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      |..|+.++.+ ++.+|+.|.+||.+|+..||..+|+.|++.+-+.-...|..+.|+|.+||..|+.++|++|+..|++..
T Consensus       773 vellv~rgan-iehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~ganke  851 (2131)
T KOG4369|consen  773 VELLVVRGAN-IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKE  851 (2131)
T ss_pred             HHHHHHhccc-ccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhcccc
Confidence            5566666666 899999999999999999999999988887655445678899999999999999999999999876532


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccc--cCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINAR--NSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRER  159 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~--n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~  159 (344)
                            .++....|||.+|...|..+++..|+..| .++|.+  .+.|-.||.+|.     ..++.+....|++.|-+++
T Consensus       852 ------hrnvsDytPlsla~Sggy~~iI~~llS~G-seInSrtgSklgisPLmlat-----mngh~~at~~ll~~gsdiN  919 (2131)
T KOG4369|consen  852 ------HRNVSDYTPLSLARSGGYTKIIHALLSSG-SEINSRTGSKLGISPLMLAT-----MNGHQAATLSLLQPGSDIN  919 (2131)
T ss_pred             ------ccchhhcCchhhhcCcchHHHHHHHhhcc-cccccccccccCcchhhhhh-----hccccHHHHHHhcccchhc
Confidence                  24555679999999999999999999999 888876  468999999999     8999999999999999999


Q ss_pred             CCCC
Q 043149          160 SSLA  163 (344)
Q Consensus       160 ~~~~  163 (344)
                      ..+.
T Consensus       920 aqIe  923 (2131)
T KOG4369|consen  920 AQIE  923 (2131)
T ss_pred             cccc
Confidence            8544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.01  E-value=9.6e-10  Score=103.73  Aligned_cols=94  Identities=21%  Similarity=0.232  Sum_probs=83.1

Q ss_pred             ChHHHH---HHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHH
Q 043149           55 ETALHV---AAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM  131 (344)
Q Consensus        55 ~t~Lh~---A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl  131 (344)
                      .+||-+   |+..|-.++|+-.+....      +....+++|-|+||-|+..||.+||++|++.| +++|+.|.+|||||
T Consensus       548 fnPLaLLLDaaLeGEldlVq~~i~ev~------DpSqpNdEGITaLHNAiCaghyeIVkFLi~~g-anVNa~DSdGWTPL  620 (752)
T KOG0515|consen  548 FNPLALLLDAALEGELDLVQRIIYEVT------DPSQPNDEGITALHNAICAGHYEIVKFLIEFG-ANVNAADSDGWTPL  620 (752)
T ss_pred             cchHHHHHhhhhcchHHHHHHHHHhhc------CCCCCCccchhHHhhhhhcchhHHHHHHHhcC-CcccCccCCCCchh
Confidence            355543   888999999998887433      36678899999999999999999999999999 99999999999999


Q ss_pred             HHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          132 DMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       132 ~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      |.|+     .-++.-+++.|++.|+-+-.
T Consensus       621 HCAA-----SCNnv~~ckqLVe~GaavfA  644 (752)
T KOG0515|consen  621 HCAA-----SCNNVPMCKQLVESGAAVFA  644 (752)
T ss_pred             hhhh-----hcCchHHHHHHHhccceEEe
Confidence            9999     88899999999999988765

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.92  E-value=5.3e-09  Score=92.18  Aligned_cols=97  Identities=22%  Similarity=0.153  Sum_probs=83.5

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcc-cccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccc
Q 043149           10 RNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESIL-QVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNW   88 (344)
Q Consensus        10 ~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~-~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~   88 (344)
                      ...++..|..|.|||..|+..|+.++|+.+|+. ++++| .++..+.||||.|+..|+.++..+|++.|++      ...
T Consensus        35 vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~-gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~------~~~  107 (396)
T KOG1710|consen   35 VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLEL-GADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGAR------MYL  107 (396)
T ss_pred             hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHh-CCCcCcccccccccHHHHHHHcCCchHHHHHHhccCc------ccc
Confidence            344889999999999999999999999888876 66665 4567799999999999999999999997664      455


Q ss_pred             cCCCCCcHHHHHHHCCcHHHHHHHH
Q 043149           89 KNDEGNTLLHISISRSHIQIVRLIV  113 (344)
Q Consensus        89 ~d~~G~TpLH~Aa~~g~~~~v~~Ll  113 (344)
                      .+.-|+|+-..|+..|+-++|..+=
T Consensus       108 vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen  108 VNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             ccchhhhHHHHHHHhcchHHHHHHh
Confidence            6778999999999999999987653

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.81  E-value=1.4e-08  Score=96.75  Aligned_cols=120  Identities=18%  Similarity=0.207  Sum_probs=103.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHC
Q 043149           24 LHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISR  103 (344)
Q Consensus        24 Lh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~  103 (344)
                      +.-|+..++.--+.+.-.. +.++-.++.+.++.||+|++.|+.++|+++++++.    ..++++.|+.|.|+||-|+..
T Consensus       870 il~av~~~D~~klqE~h~~-gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p----~elld~~de~get~lhkaa~~  944 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLN-GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGP----SELLDMADETGETALHKAACQ  944 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhc-CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCC----HHHHHHHhhhhhHHHHHHHHh
Confidence            4566777765555555554 55667789999999999999999999999999874    467899999999999999999


Q ss_pred             CcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149          104 SHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus       104 g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                      ++..++++|++.| +.+...|.+|.||-.-|.     +.+..++..+|..+
T Consensus       945 ~~r~vc~~lvdag-asl~ktd~kg~tp~eraq-----qa~d~dlaayle~r  989 (1004)
T KOG0782|consen  945 RNRAVCQLLVDAG-ASLRKTDSKGKTPQERAQ-----QAGDPDLAAYLESR  989 (1004)
T ss_pred             cchHHHHHHHhcc-hhheecccCCCChHHHHH-----hcCCchHHHHHhhh
Confidence            9999999999999 999999999999999998     78888998888765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.80  E-value=3.2e-09  Score=104.93  Aligned_cols=89  Identities=17%  Similarity=0.220  Sum_probs=77.4

Q ss_pred             HHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCC-CCCcHHHHHHHCCcHHHHHHHHhccCc
Q 043149           40 LAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKND-EGNTLLHISISRSHIQIVRLIVKRVRD  118 (344)
Q Consensus        40 L~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~-~G~TpLH~Aa~~g~~~~v~~Ll~~~~~  118 (344)
                      -+.|...++..|..|+|+||+|+..++.+++++|+++|.+      ++.+|+ .|+||||-|...|+.+++-.|+.+| +
T Consensus        38 ~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid------v~vqD~ESG~taLHRaiyyG~idca~lLL~~g-~  110 (1267)
T KOG0783|consen   38 EKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID------VFVQDEESGYTALHRAIYYGNIDCASLLLSKG-R  110 (1267)
T ss_pred             HHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce------eeeccccccchHhhHhhhhchHHHHHHHHhcC-C
Confidence            3456666788899999999999999999999999997654      667775 5999999999999999999999999 8


Q ss_pred             ccccccCCCCCHHHHHh
Q 043149          119 QINARNSKDNTAMDMVK  135 (344)
Q Consensus       119 ~~~~~n~~G~Tpl~~a~  135 (344)
                      .+.++|++|..||++.+
T Consensus       111 SL~i~Dkeglsplq~~~  127 (1267)
T KOG0783|consen  111 SLRIKDKEGLSPLQFLS  127 (1267)
T ss_pred             ceEEecccCCCHHHHHh
Confidence            99999999999999887

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.72  E-value=1.2e-08  Score=95.28  Aligned_cols=92  Identities=18%  Similarity=0.255  Sum_probs=49.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHH
Q 043149           52 IRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM  131 (344)
Q Consensus        52 ~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl  131 (344)
                      .++...+.+|++.|....++.+.-.      ..+++.+|.+.+|+||.||..|+.+++++|++...++++.+|..|+|||
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~------g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPl  577 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQ------GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPL  577 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHh------cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcc
Confidence            3444455555555555555443321      2234555555555555555555555555555544455666666666666


Q ss_pred             HHHhhhcCCCccHHHHHHHHHHc
Q 043149          132 DMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus       132 ~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                      |-|.     ..++.+++++|.++
T Consensus       578 DdA~-----~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  578 DDAK-----HFKHKEVVKLLEEA  595 (622)
T ss_pred             hHhH-----hcCcHHHHHHHHHH
Confidence            6665     55556666665554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.66  E-value=3e-08  Score=59.86  Aligned_cols=33  Identities=45%  Similarity=0.710  Sum_probs=26.7

Q ss_pred             CCCcHHHHHHHCCcHHHHHHHHhccCcccccccC
Q 043149           92 EGNTLLHISISRSHIQIVRLIVKRVRDQINARNS  125 (344)
Q Consensus        92 ~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~  125 (344)
                      +|+||||+|+..|+.+++++|+++| ++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG-ADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT-SCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc-CCCCCCCC
Confidence            5788888888888888888888887 88887764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.64  E-value=3e-08  Score=92.73  Aligned_cols=95  Identities=24%  Similarity=0.266  Sum_probs=85.7

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCc
Q 043149           16 QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNT   95 (344)
Q Consensus        16 ~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~T   95 (344)
                      ++.++..++.+||+.|++..++.+... +.+++..|.+.+|+||+|+-.|+.+++|+|++..     ....+.+|..|+|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~-----kv~~~~kDRw~rt  575 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNAC-----KVDPDPKDRWGRT  575 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHH-----cCCCChhhccCCC
Confidence            346778899999999999999999988 8899999999999999999999999999999853     3446789999999


Q ss_pred             HHHHHHHCCcHHHHHHHHhcc
Q 043149           96 LLHISISRSHIQIVRLIVKRV  116 (344)
Q Consensus        96 pLH~Aa~~g~~~~v~~Ll~~~  116 (344)
                      ||--|...+|.+++++|-+..
T Consensus       576 PlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  576 PLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             cchHhHhcCcHHHHHHHHHHh
Confidence            999999999999999887654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.64  E-value=3.6e-08  Score=58.05  Aligned_cols=29  Identities=34%  Similarity=0.634  Sum_probs=18.9

Q ss_pred             CCCcHHHHHHHCCcHHHHHHHHhccCcccc
Q 043149           92 EGNTLLHISISRSHIQIVRLIVKRVRDQIN  121 (344)
Q Consensus        92 ~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~  121 (344)
                      +|+||||+|+..|+.+++++|+++| +++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~g-advn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHG-ADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC-CCCC
Confidence            3666666666666666666666666 5554

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.60  E-value=1.1e-07  Score=90.94  Aligned_cols=95  Identities=16%  Similarity=0.185  Sum_probs=80.3

Q ss_pred             HHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhh
Q 043149           58 LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFH  137 (344)
Q Consensus        58 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~  137 (344)
                      |.-|+.......+-+|+.+|....  ..-...+.+|.|+||+||..|+..+.++|+.++ +|+.++|.+|+|||.+|.  
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e--~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg-~dv~~rda~g~t~l~yar--  702 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREE--VNETCGEGDGRTALHLAARKGNVVLAQLLIWYG-VDVMARDAHGRTALFYAR--  702 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchh--hhccccCCCCcchhhhhhhhcchhHHHHHHHhC-ccceecccCCchhhhhHh--
Confidence            556777777888888888876532  222345678899999999999999999999999 999999999999999999  


Q ss_pred             cCCCccHHHHHHHHHHcCCCCCC
Q 043149          138 LQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       138 ~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                         ..+..+++.+|+++|+-...
T Consensus       703 ---~a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  703 ---QAGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             ---hcccHHHHHHHHHcCCCccc
Confidence               88999999999999987654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.57  E-value=2e-07  Score=87.77  Aligned_cols=93  Identities=22%  Similarity=0.232  Sum_probs=75.1

Q ss_pred             cccCCCCh------HHHHHHHcCCHHHHHHHHhchhccCccccccccC-CCCCcHHHHHHHCCcHHHHHHHHhccCcccc
Q 043149           49 QVTIRKET------ALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKN-DEGNTLLHISISRSHIQIVRLIVKRVRDQIN  121 (344)
Q Consensus        49 ~~d~~G~t------~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d-~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~  121 (344)
                      .+|.+|.+      -||-.++.|+.+..-.|+..|++.      |-.+ +.|+||||.|++.|+..-+++|+-+| +|++
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~------N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG-AD~~  194 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQA------NFFHPEKGNTPLHVAAKAGQILQAELLAVYG-ADPG  194 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHccccc------CCCCcccCCchhHHHHhccchhhhhHHhhcc-CCCC
Confidence            34555544      489999999999887777766654      3344 56999999999999999999999999 9999


Q ss_pred             cccCCCCCHHHHHhhhcCCCccHHHHHHHHHH
Q 043149          122 ARNSKDNTAMDMVKFHLQTKPEFEELKSMVRK  153 (344)
Q Consensus       122 ~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~  153 (344)
                      ..|..|.||+++|.     ..|+.++.+.|++
T Consensus       195 a~d~~GmtP~~~AR-----~~gH~~laeRl~e  221 (669)
T KOG0818|consen  195 AQDSSGMTPVDYAR-----QGGHHELAERLVE  221 (669)
T ss_pred             CCCCCCCcHHHHHH-----hcCchHHHHHHHH
Confidence            99999999999998     7777777666554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.52  E-value=2.5e-07  Score=88.27  Aligned_cols=101  Identities=22%  Similarity=0.228  Sum_probs=88.9

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC-cccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccc
Q 043149           10 RNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPES-ILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNW   88 (344)
Q Consensus        10 ~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~-~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~   88 (344)
                      +..+-.++.+..|.||+|++.|+-|+|+++|++.|.. ++..|.+|+|+||-|+-.++-.+.++|++.|+      -+..
T Consensus       889 gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdaga------sl~k  962 (1004)
T KOG0782|consen  889 GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGA------SLRK  962 (1004)
T ss_pred             CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcch------hhee
Confidence            3447788999999999999999999999999987754 56788999999999999999999999999554      4677


Q ss_pred             cCCCCCcHHHHHHHCCcHHHHHHHHhcc
Q 043149           89 KNDEGNTLLHISISRSHIQIVRLIVKRV  116 (344)
Q Consensus        89 ~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~  116 (344)
                      .|..|.||-.-|-+.|.++...||-.+.
T Consensus       963 td~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  963 TDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             cccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            8999999999999999999999987654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.48  E-value=8.9e-08  Score=95.00  Aligned_cols=88  Identities=24%  Similarity=0.243  Sum_probs=78.6

Q ss_pred             CCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccC-CCChHHHHHHHcCCHHHHHHHHhchhccCcccccc
Q 043149            9 DRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTI-RKETALHVAAKYDRLEVLETMLGWLRYVNMDDILN   87 (344)
Q Consensus         9 ~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~-~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln   87 (344)
                      .....+++|..|+|+||+|+..|..++++.||.+ |.++..+|. .|+||||.|..+|+.+++-.|+.+|      .-+.
T Consensus        41 c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g------~SL~  113 (1267)
T KOG0783|consen   41 CQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG------RSLR  113 (1267)
T ss_pred             hhhhhhHHHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHhcC------CceE
Confidence            3456889999999999999999999999999987 888888886 4999999999999999999999976      3478


Q ss_pred             ccCCCCCcHHHHHHHC
Q 043149           88 WKNDEGNTLLHISISR  103 (344)
Q Consensus        88 ~~d~~G~TpLH~Aa~~  103 (344)
                      .+|++|.+||.+-++.
T Consensus       114 i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  114 IKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             EecccCCCHHHHHhhc
Confidence            8999999999987763

>PF13606 Ank_3: Ankyrin repeat

Probab=98.46  E-value=1.9e-07  Score=54.95  Aligned_cols=27  Identities=26%  Similarity=0.330  Sum_probs=18.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhchhc
Q 043149           53 RKETALHVAAKYDRLEVLETMLGWLRY   79 (344)
Q Consensus        53 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~   79 (344)
                      +|+||||+||++|+.+++++|+++|.+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            366777777777777777777776544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.44  E-value=4.3e-07  Score=86.44  Aligned_cols=89  Identities=26%  Similarity=0.317  Sum_probs=69.0

Q ss_pred             cHHHHHHHcCCHHHHHHHH-HhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHH
Q 043149           22 TPLHYVAEKGNVDLLCKFL-AACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHIS  100 (344)
Q Consensus        22 TpLh~Aa~~G~~~~v~~LL-~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~A  100 (344)
                      -|+|+++.....+-+...+ .+-...++..|..|+||||+|+.-|+.+.++.|+..+      +.+..+|++|++|||-|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~------Adv~~kN~~gWs~L~EA   95 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG------ADVSIKNNEGWSPLHEA   95 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcC------CCccccccccccHHHHH
Confidence            4588888777766555543 3344567788888999999999999999999988844      44677889999999999


Q ss_pred             HHCCcHHHHHHHHhcc
Q 043149          101 ISRSHIQIVRLIVKRV  116 (344)
Q Consensus       101 a~~g~~~~v~~Ll~~~  116 (344)
                      +..|+.+++..++.+.
T Consensus        96 v~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   96 VSTGNEQIITEVLRHL  111 (560)
T ss_pred             HHcCCHHHHHHHHHHh
Confidence            9999888888887764

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.43  E-value=8.2e-07  Score=83.68  Aligned_cols=93  Identities=20%  Similarity=0.233  Sum_probs=78.9

Q ss_pred             ccCCCCCcH------HHHHHHcCCHHHHHHHHHhCCCCccccc-CCCChHHHHHHHcCCHHHHHHHHhchhccCcccccc
Q 043149           15 VQGREGVTP------LHYVAEKGNVDLLCKFLAACPESILQVT-IRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILN   87 (344)
Q Consensus        15 ~~d~~G~Tp------Lh~Aa~~G~~~~v~~LL~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln   87 (344)
                      -+|.+|.|.      ||-.++.|+.+..-.||.. |+..|..+ ..|.||||+|++.|+..-+++|+-+|++      ++
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD------~~  194 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD------PG  194 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC------CC
Confidence            356666554      8999999999999888887 67777766 4699999999999999999999987766      67


Q ss_pred             ccCCCCCcHHHHHHHCCcHHHHHHHHh
Q 043149           88 WKNDEGNTLLHISISRSHIQIVRLIVK  114 (344)
Q Consensus        88 ~~d~~G~TpLH~Aa~~g~~~~v~~Ll~  114 (344)
                      ..|.+|.||+-+|-..||-++.+-|++
T Consensus       195 a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  195 AQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            799999999999999999887776654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.39  E-value=8.9e-07  Score=84.30  Aligned_cols=73  Identities=21%  Similarity=0.242  Sum_probs=60.9

Q ss_pred             HHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhch
Q 043149            4 RLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWL   77 (344)
Q Consensus         4 ~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~   77 (344)
                      +++..-...+...|..|+||||+|+..|+.+.++.|+.. ++++..+|+.|+++||-|+..|+.+++..++.+.
T Consensus        39 el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a-~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   39 ELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA-GADVSIKNNEGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             HHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc-CCCccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence            344444455778899999999999999999999877776 7778889999999999999999999988887753

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.32  E-value=9.5e-07  Score=53.21  Aligned_cols=29  Identities=38%  Similarity=0.622  Sum_probs=14.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCccc
Q 043149           20 GVTPLHYVAEKGNVDLLCKFLAACPESILQ   49 (344)
Q Consensus        20 G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~   49 (344)
                      |+||||+|+..|+.++++.|++. +.+++.
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~-ga~~~~   30 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKH-GADINA   30 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHT-TSCTTC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHC-cCCCCC
Confidence            45555555555555555444442 444443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.28  E-value=7.8e-07  Score=90.87  Aligned_cols=131  Identities=15%  Similarity=0.104  Sum_probs=101.3

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCC
Q 043149           13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDE   92 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~   92 (344)
                      .....-.|+|-+|+++..|+.-.++.+++-.+......|.+|...+|. |..++.++.-+++.+     .+.-++.+|..
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~-----~~~ai~i~D~~  640 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISA-----DGVAIDIRDRN  640 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEee-----cccccccccCC
Confidence            344567899999999999999999999985344455678889999999 556666776666654     23458889999


Q ss_pred             CCcHHHHHHHCCcHHHHHHHHhccCc-----ccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149           93 GNTLLHISISRSHIQIVRLIVKRVRD-----QINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus        93 G~TpLH~Aa~~g~~~~v~~Ll~~~~~-----~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                      |+||||+|+..|+..++..|++.++.     ++...+-.|.|+-++|.     ..++..+..+|-+.
T Consensus       641 G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~-----s~g~~gia~~lse~  702 (975)
T KOG0520|consen  641 GWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLAR-----ANGHKGIAGYLSEK  702 (975)
T ss_pred             CCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhh-----cccccchHHHHhhh
Confidence            99999999999999999999977621     23344557999999998     67777776666554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.28  E-value=2.9e-06  Score=85.14  Aligned_cols=124  Identities=21%  Similarity=0.192  Sum_probs=100.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCC---CcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCC
Q 043149           18 REGVTPLHYVAEKGNVDLLCKFLAACPE---SILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGN   94 (344)
Q Consensus        18 ~~G~TpLh~Aa~~G~~~~v~~LL~~~~~---~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~   94 (344)
                      ..+.--...|+..|+...|+++++....   ++|.+|.-|+++||+|+.+.+.++.++|+++...            . .
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~------------~-g   89 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE------------E-G   89 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc------------c-c
Confidence            3455556789999999999999987554   5788999999999999999999999999984211            1 3


Q ss_pred             cHHHHHHHCCcHHHHHHHHhccCccc----------ccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           95 TLLHISISRSHIQIVRLIVKRVRDQI----------NARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        95 TpLH~Aa~~g~~~~v~~Ll~~~~~~~----------~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      .+|-+|...|..++|+.++.+. ..-          ...-..+-||+.+|+     ..++.||+++|+++|+.+..
T Consensus        90 dALL~aI~~~~v~~VE~ll~~~-~~~~~~~~~~d~~~~~ft~ditPliLAA-----h~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   90 DALLLAIAVGSVPLVELLLVHF-VDAPYLERSGDANSPHFTPDITPLMLAA-----HLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcc-cccchhccccccCcccCCCCccHHHHHH-----HhcchHHHHHHHHcCCCCCC
Confidence            4777799999999999999875 211          122345789999999     88999999999999998876

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.11  E-value=7.4e-06  Score=78.72  Aligned_cols=86  Identities=14%  Similarity=0.096  Sum_probs=68.1

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCC----cccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHH
Q 043149           24 LHYVAEKGNVDLLCKFLAACPES----ILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHI   99 (344)
Q Consensus        24 Lh~Aa~~G~~~~v~~LL~~~~~~----~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~   99 (344)
                      |.-|+...++..+-.||.+ +..    -...+.+|+|+||+||+.|+..+.++|+-+|.+      +...|..|+|+|.+
T Consensus       628 Ll~A~~~~Dl~t~~lLLAh-g~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d------v~~rda~g~t~l~y  700 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAH-GSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD------VMARDAHGRTALFY  700 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhc-cCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc------ceecccCCchhhhh
Confidence            4455666666666555554 322    223456789999999999999999999976654      56799999999999


Q ss_pred             HHHCCcHHHHHHHHhcc
Q 043149          100 SISRSHIQIVRLIVKRV  116 (344)
Q Consensus       100 Aa~~g~~~~v~~Ll~~~  116 (344)
                      |-+.|..+++..|+++|
T Consensus       701 ar~a~sqec~d~llq~g  717 (749)
T KOG0705|consen  701 ARQAGSQECIDVLLQYG  717 (749)
T ss_pred             HhhcccHHHHHHHHHcC
Confidence            99999999999999998

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.00  E-value=4.8e-06  Score=85.43  Aligned_cols=89  Identities=22%  Similarity=0.243  Sum_probs=77.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHH
Q 043149           52 IRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM  131 (344)
Q Consensus        52 ~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl  131 (344)
                      ..|.++||.|+.++...++++|++.|++      +|..|..|+||||.+...|+...+..+++++ ++.++.|.+|.+|+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~------vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~-a~~~a~~~~~~~~l  726 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD------VNALDSKGRTPLHHATASGHTSIACLLLKRG-ADPNAFDPDGKLPL  726 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc------chhhhccCCCcchhhhhhcccchhhhhcccc-ccccccCccCcchh
Confidence            4679999999999999999999996543      8899999999999999999999999999999 99999999999999


Q ss_pred             HHHhhhcCCCccHHHHHHHHH
Q 043149          132 DMVKFHLQTKPEFEELKSMVR  152 (344)
Q Consensus       132 ~~a~~~~~~~~~~~~i~~~L~  152 (344)
                      ++|.     ...+.+++-++.
T Consensus       727 ~~a~-----~~~~~d~~~l~~  742 (785)
T KOG0521|consen  727 DIAM-----EAANADIVLLLR  742 (785)
T ss_pred             hHHh-----hhccccHHHHHh
Confidence            9998     334445544443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.92  E-value=5.7e-06  Score=84.77  Aligned_cols=113  Identities=14%  Similarity=0.079  Sum_probs=91.3

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      +..+++.........|.+|.-.+|+ |..|+.++..+++...+..++.+|..||||||+|+.+|+.+++..|++.+++.+
T Consensus       590 ie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  590 IEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPG  668 (975)
T ss_pred             HHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccc
Confidence            3455665333466778888888888 566677777778878899999999999999999999999999999999888766


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhc
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR  115 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~  115 (344)
                      .....+..+-.|.|+--+|..+|+..+.-+|-+.
T Consensus       669 ~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  669 AVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            5555666677899999999999999888777654

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.69  E-value=3.7e-05  Score=79.06  Aligned_cols=88  Identities=19%  Similarity=0.201  Sum_probs=75.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHH
Q 043149           18 REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLL   97 (344)
Q Consensus        18 ~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpL   97 (344)
                      ..|.|+||.|+..|..-+++.||+. +++++..|..|+||||.+...|+...+..+++.+++      .+..|.+|.+||
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~-ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~------~~a~~~~~~~~l  726 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQN-GADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD------PNAFDPDGKLPL  726 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhc-CCcchhhhccCCCcchhhhhhcccchhhhhcccccc------ccccCccCcchh
Confidence            4689999999999999998666665 888999999999999999999999999999996554      677899999999


Q ss_pred             HHHHHCCcHHHHHHH
Q 043149           98 HISISRSHIQIVRLI  112 (344)
Q Consensus        98 H~Aa~~g~~~~v~~L  112 (344)
                      ++|....+.+++-++
T Consensus       727 ~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  727 DIAMEAANADIVLLL  741 (785)
T ss_pred             hHHhhhccccHHHHH
Confidence            999887666655444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.68  E-value=0.00015  Score=60.78  Aligned_cols=67  Identities=15%  Similarity=0.041  Sum_probs=40.5

Q ss_pred             CCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhcc
Q 043149           45 ESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRV  116 (344)
Q Consensus        45 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~  116 (344)
                      .+++.+|..|||+|..|+..|+.+.+.+|+++|.     ..+...|..|++++-+|-+.|..++++.|-+..
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~-----a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGV-----AFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCc-----ccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            3456666666666666666666666666666441     224556666666666666666666666665543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.66  E-value=0.0001  Score=61.73  Aligned_cols=66  Identities=14%  Similarity=0.074  Sum_probs=61.5

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhc
Q 043149           11 NLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGW   76 (344)
Q Consensus        11 ~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~   76 (344)
                      ..++.+|..|+||+++|+..|+.+.+..|+.+.-..+...|..|.+++.+|-+.|+.++++.|-+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            358899999999999999999999999999986688999999999999999999999999999875

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.61  E-value=0.00013  Score=73.53  Aligned_cols=111  Identities=15%  Similarity=0.158  Sum_probs=82.2

Q ss_pred             HHHHHhcCC---ccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchh
Q 043149            2 VLRLIDFDR---NLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR   78 (344)
Q Consensus         2 v~~LL~~~~---~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~   78 (344)
                      |+..|+...   -++|..|.-|+++||.|..+-+.|+++.|++. +...       ..+|.+|+..|..++|+.++.+..
T Consensus        41 V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~-~~~~-------gdALL~aI~~~~v~~VE~ll~~~~  112 (822)
T KOG3609|consen   41 VAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT-SSEE-------GDALLLAIAVGSVPLVELLLVHFV  112 (822)
T ss_pred             HHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcC-cccc-------chHHHHHHHHHHHHHHHHHHhccc
Confidence            455555543   35788999999999999999999999777765 3221       468999999999999999998743


Q ss_pred             ccCccccc----cccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccc
Q 043149           79 YVNMDDIL----NWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQIN  121 (344)
Q Consensus        79 ~~~~~~~l----n~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~  121 (344)
                      ........    ...-..+-|||.+||..+|.||+++|+.+| +.+.
T Consensus       113 ~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg-~~i~  158 (822)
T KOG3609|consen  113 DAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRG-HCIP  158 (822)
T ss_pred             ccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcC-CCCC
Confidence            32111110    112234779999999999999999999998 5543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.56  E-value=0.0003  Score=64.79  Aligned_cols=127  Identities=13%  Similarity=0.091  Sum_probs=79.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHH
Q 043149           21 VTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHIS  100 (344)
Q Consensus        21 ~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~A  100 (344)
                      .--|..||+.|.++.|+.|++ .+.++|.+|.-...||.+|+..||..+|++|+++|+-.      ..-..+|.-. |++
T Consensus        37 f~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC------~rdtf~G~RC-~Yg  108 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC------SRDTFDGDRC-HYG  108 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc------cccccCcchh-hhh
Confidence            445788999999999999998 48899999999999999999999999999999976542      2222345443 444


Q ss_pred             HHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCC
Q 043149          101 ISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRER  159 (344)
Q Consensus       101 a~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~  159 (344)
                      +.+  ..+-+.|++.. . ..+.|...--+-|+...-.....+...=+.++.+.|+...
T Consensus       109 aLn--d~IR~mllsyd-i-~KA~d~~qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f~  163 (516)
T KOG0511|consen  109 ALN--DRIRRMLLSYD-I-LKAFDARQPPAAHIQSSLRDTFLGCCHDIDFLQQEGANFD  163 (516)
T ss_pred             hhh--HHHHHHHHHHH-H-HHHhhccCCcchHHHHHhhccccccccchHHHhhcccccc
Confidence            443  23445555543 1 1222322222333333111111222333467788888773

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.32  E-value=0.00054  Score=65.25  Aligned_cols=69  Identities=13%  Similarity=0.130  Sum_probs=57.2

Q ss_pred             CHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHh
Q 043149           66 RLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus        66 ~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~  135 (344)
                      -+..+++|.+++...+..-.....|.--.|+||+|+..|.-++|.+||+.+ +|+..+|..|.||.+++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccc
Confidence            366777887766555444444455666789999999999999999999999 999999999999999887

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.27  E-value=0.0009  Score=61.76  Aligned_cols=71  Identities=10%  Similarity=0.033  Sum_probs=49.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHH
Q 043149           57 ALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMV  134 (344)
Q Consensus        57 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a  134 (344)
                      -|..||+.|..+.|+.|++.|.      .+|..|...++||.+|+..||.++|++|+++| +-.+--.-+|...+.-|
T Consensus        39 elceacR~GD~d~v~~LVetgv------nVN~vD~fD~spL~lAsLcGHe~vvklLLenG-AiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGV------NVNAVDRFDSSPLYLASLCGHEDVVKLLLENG-AICSRDTFDGDRCHYGA  109 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCC------CcchhhcccccHHHHHHHcCcHHHHHHHHHcC-CcccccccCcchhhhhh
Confidence            4677788888888888877443      36777777778888888888888888888877 65544445555544333

>smart00248 ANK ankyrin repeats

Probab=96.61  E-value=0.0035  Score=34.73  Aligned_cols=24  Identities=25%  Similarity=0.619  Sum_probs=13.9

Q ss_pred             CCcHHHHHHHCCcHHHHHHHHhcc
Q 043149           93 GNTLLHISISRSHIQIVRLIVKRV  116 (344)
Q Consensus        93 G~TpLH~Aa~~g~~~~v~~Ll~~~  116 (344)
                      |+||+|+|+..++.++++.|++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            455555555555555555555554

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.12  E-value=0.0086  Score=33.00  Aligned_cols=22  Identities=41%  Similarity=0.584  Sum_probs=11.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHh
Q 043149           54 KETALHVAAKYDRLEVLETMLG   75 (344)
Q Consensus        54 G~t~Lh~A~~~g~~~iv~~Ll~   75 (344)
                      |.|++|+|+..++.++++.|++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~   23 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLD   23 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH
Confidence            3445555555555555555544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.77  E-value=0.075  Score=51.12  Aligned_cols=53  Identities=21%  Similarity=0.087  Sum_probs=34.7

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHH
Q 043149           52 IRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVR  110 (344)
Q Consensus        52 ~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~  110 (344)
                      .--.|+||+|+..|..++|.++++.|.+      ...+|..|.||-.++.......+..
T Consensus       428 ~ltsT~LH~aa~qg~~k~v~~~Leeg~D------p~~kd~~Grtpy~ls~nkdVk~~F~  480 (591)
T KOG2505|consen  428 YLTSTFLHYAAAQGARKCVKYFLEEGCD------PSTKDGAGRTPYSLSANKDVKSIFI  480 (591)
T ss_pred             cccchHHHHHHhcchHHHHHHHHHhcCC------chhcccCCCCcccccccHHHHHHHH
Confidence            3456777777777777777777775433      4457777777777777444444443

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.30  E-value=0.5  Score=41.22  Aligned_cols=121  Identities=12%  Similarity=0.156  Sum_probs=79.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHH--H
Q 043149           24 LHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHIS--I  101 (344)
Q Consensus        24 Lh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~A--a  101 (344)
                      |--|+..-+.+.+..++...+        +-.+++-+|..+++.+++-+|+..-.- ..........  +---+.++  .
T Consensus       157 ledAV~AsN~~~i~~~VtdKk--------dA~~Am~~si~~~K~dva~~lls~f~f-t~~dv~~~~~--~~ydieY~LS~  225 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKK--------DAHQAMWLSIGNAKEDVALYLLSKFNF-TKQDVASMEK--ELYDIEYLLSE  225 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchH--------HHHHHHHHHhcccHHHHHHHHHhhcce-ecchhhhcCc--chhhHHHHHhh
Confidence            455666666666655554322        235688889989999999998863110 0111111111  11122222  2


Q ss_pred             HCCcHHHHHHHHhccCccccc---ccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          102 SRSHIQIVRLIVKRVRDQINA---RNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       102 ~~g~~~~v~~Ll~~~~~~~~~---~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      -..+..+.++++.+|-+++|.   +-+.|.|-|+-|.     ++++.+++.+|+++||-.+.
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~-----Ky~~~emi~~Llk~GA~~~k  282 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAM-----KYKNSEMIAFLLKYGAISGK  282 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHH-----hcCcHHHHHHHHHcCccccC
Confidence            334778999999999777775   4678999999999     99999999999999996554

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=89.73  E-value=1.3  Score=37.50  Aligned_cols=115  Identities=10%  Similarity=0.119  Sum_probs=73.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC---------------------
Q 043149           23 PLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN---------------------   81 (344)
Q Consensus        23 pLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~---------------------   81 (344)
                      -|..|++.+-.+++++.=+.-    ...-...++.+-.||+..+.++|+++-+...-.+                     
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L----~~~~~~~q~LFElAC~~qkydiV~WI~qnL~i~~~~~iFdIA~~~kDlsLyslGY  124 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDL----ENERYLNQELFELACEEQKYDIVKWIGQNLHIYNPEDIFDIAFAKKDLSLYSLGY  124 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHh----hcchhHHHHHHHHHHHHccccHHHHHhhccCCCCchhhhhhhhhccchhHHHHHH
Confidence            455688888888876654431    1111346778888999999999999865432211                     


Q ss_pred             ---ccccccccCCCC----CcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHH
Q 043149           82 ---MDDILNWKNDEG----NTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRK  153 (344)
Q Consensus        82 ---~~~~ln~~d~~G----~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~  153 (344)
                         .+...+..+.+-    +--|+.|+.+|-...+-..+++| .+++      .+++..|+     .+++++|..+++.
T Consensus       125 ~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkyg-g~~~------~~vls~Av-----~ynhRkIL~yfi~  191 (192)
T PF03158_consen  125 KLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYG-GNVD------IIVLSQAV-----KYNHRKILDYFIR  191 (192)
T ss_pred             HHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcC-Cccc------HHHHHHHH-----HhhHHHHHHHhhc
Confidence               000011101111    12367788899888888888888 5544      27888888     8888888887764

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.16  E-value=1.8  Score=31.04  Aligned_cols=48  Identities=19%  Similarity=0.212  Sum_probs=38.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhc
Q 043149           21 VTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGW   76 (344)
Q Consensus        21 ~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~   76 (344)
                      ..-+..|...|+.|+++.+++...  .      ....+..|+...+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~--~------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK--P------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc--c------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            345789999999999988886531  1      14579999999999999999873

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	344
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-08
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		5e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-07
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-07
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		4e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-04
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-06
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		5e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		7e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		8e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-05
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-04
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		6e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-04
1uoh_A	226	Human Gankyrin Length = 226		8e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		8e-04

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
           G TPLH  A  G+++++   L    + +  +     T LH+AAK   LE++E +L +   
Sbjct: 47  GDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
           VN DD +      G+T LH++    H++IV +++K   D +NA++    TA D+
Sbjct: 106 VNADDTI------GSTPLHLAADTGHLEIVEVLLKYGAD-VNAQDKFGKTAFDI 152

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
           V     +G TPLHY A++G+ +++ K L +    +        T LH AAK    E+++ 
Sbjct: 30  VNASDSDGRTPLHYAAKEGHKEIV-KLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 88
Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
           ++     VN       K+ +G T LH +    H +IV+L++ +  D +N  +S   T +D
Sbjct: 89  LISKGADVNA------KDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNTSDSDGRTPLD 141
Query: 133 MVKFHLQTKPEFEELKSMVRKAGG 156
           + + H       EE+  ++ K GG
Sbjct: 142 LAREHGN-----EEIVKLLEKQGG 160

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE---TALHVAAKYDRLEV 69
           V  + ++G TPLH  A +G+++++   L A  +    V  + +   T LH+AA+   LE+
Sbjct: 40  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEI 95
Query: 70  LETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT 129
           +E +L     VN       K+ +G T LH++    H++IV +++K   D +NA++    T
Sbjct: 96  VEVLLKAGADVN------AKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKT 148
Query: 130 AMDM 133
           A D+
Sbjct: 149 AFDI 152

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 56  TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
           T LH+AA+   LE++E +L     VN       K+ +G T LH++    H++IV +++K 
Sbjct: 49  TPLHLAAREGHLEIVEVLLKAGADVN------AKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 116 VRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG 155
             D +NA++    T +     HL  +    E+  ++ KAG
Sbjct: 103 GAD-VNAKDKDGYTPL-----HLAAREGHLEIVEVLLKAG 136

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
           G TPLH  A  G+++++   L    +     T+   T LH+AA +  LE++E +L     
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL-GSTPLHLAAHFGHLEIVEVLL----- 100
Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
            N  D+ N K+D G T LH++ +R H++IV +++K   D +NA++    TA D+
Sbjct: 101 KNGADV-NAKDDNGITPLHLAANRGHLEIVEVLLKYGAD-VNAQDKFGKTAFDI 152

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
           +G TPLHY AE G+ +++   L+   +   + +  + T LH AA+    E+++ +L    
Sbjct: 36  DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-TPLHYAAENGHKEIVKLLLSKGA 94
Query: 79  YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHL 138
             N       K+ +G T LH +    H +IV+L++ +  D  N  +S   T +D+ + H 
Sbjct: 95  DPNA------KDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NTSDSDGRTPLDLAREHG 147
Query: 139 QTKPEFEELKSMVRKAGG 156
                 EE+  ++ K GG
Sbjct: 148 N-----EEIVKLLEKQGG 160

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
           V     +G TPLH  AE G+ +++   L+   +   + +  K T LH+AA+    EV++ 
Sbjct: 30  VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENGHKEVVKL 88
Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
           +L      N       K+ +G T LH++    H ++V+L++ +  D  N  +S   T +D
Sbjct: 89  LLSQGADPNA------KDSDGKTPLHLAAENGHKEVVKLLLSQGADP-NTSDSDGRTPLD 141
Query: 133 MVKFHLQTKPEFEELKSMVRKAGG 156
           + + H       EE+  ++ K GG
Sbjct: 142 LAREHGN-----EEVVKLLEKQGG 160

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 19/145 (13%)
Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE---TALHVAAKYDRLEV 69
           V  + ++G TPLH  A +G+++++   L A  +    V  + +   T LH+AA+   LE+
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEI 83
Query: 70  LETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT 129
           +E +L        D  +N K+ +G T LH++    H++IV +++K   D +NA++    T
Sbjct: 84  VEVLL----KAGAD--VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKT 136
Query: 130 AMDMVKFHLQTKPEFEELKSMVRKA 154
                 F L  +   E++  +++KA
Sbjct: 137 -----PFDLAIREGHEDIAEVLQKA 156

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 58  LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
           +H AA+  +L+ L+T+L +   VN++D      +EGN  LH++    H+++V  +VK   
Sbjct: 74  IHDAARAGQLDTLQTLLEFQADVNIED------NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 118 DQINARNSKDNTAMDMVKFH 137
             +  RN K +TA D+ + +
Sbjct: 128 SNVGHRNHKGDTACDLARLY 147

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 14/125 (11%)
Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE---TALHVAAKYDRLEV 69
           V  + ++G TPLH  A +G+++++   L A  +    V  + +   T LH+AA+   LE+
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEI 83
Query: 70  LETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT 129
           +E +L     VN       K+ +G T LH++    H++IV +++K   D +NA++    T
Sbjct: 84  VEVLLKAGADVN------AKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKT 136
Query: 130 AMDMV 134
             D+ 
Sbjct: 137 PFDLA 141

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 56  TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
           T LH+AA+   LE++E +L     VN       K+ +G T LH++    H++IV +++K 
Sbjct: 37  TPLHLAAREGHLEIVEVLLKAGADVN------AKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 116 VRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG 155
             D +NA++    T +     HL  +    E+  ++ KAG
Sbjct: 91  GAD-VNAKDKDGYTPL-----HLAAREGHLEIVEVLLKAG 124

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
           V     +G TPLH+ AE G+ +++ K L +    +        T LH AA+    EV++ 
Sbjct: 30  VNASDSDGRTPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 88
Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
           ++     VN       K+ +G T LH +    H ++V+L++ +  D +N  +S   T +D
Sbjct: 89  LISKGADVNA------KDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLD 141
Query: 133 MVKFHLQTKPEFEELKSMVRKAGG 156
           + + H       EE+  ++ K GG
Sbjct: 142 LAREHGN-----EEVVKLLEKQGG 160

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
           G+TPLH  A  G+++++   L    + +  + I   T LH+AA    LE++E +L     
Sbjct: 47  GLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
           VN  D   W    G+T LH++    H++IV +++K   D +NA++    TA D+
Sbjct: 106 VNAVD--TW----GDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDI 152

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
           G+TPLH  A  G+++++   L    + +  + I   T LH+AA    LE++E +L     
Sbjct: 47  GLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
           VN  D   W    G+T LH++    H++IV +++K   D +NA++    TA D+
Sbjct: 106 VNAVD--TW----GDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDI 152

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
           V  +   G TPLH  A KG+++++   L    + +       +T LH+AA Y  LE++E 
Sbjct: 40  VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEV 98
Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
           +L     VN  D   +      T LH++    H++IV +++K   D +NA++    TA D
Sbjct: 99  LLKNGADVNATDTYGF------TPLHLAADAGHLEIVEVLLKYGAD-VNAQDKFGKTAFD 151
Query: 133 M 133
           +
Sbjct: 152 I 152

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
           V     +G TPLH  A  G+++++   L    + +    +   T LH+AA    LE++E 
Sbjct: 40  VNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEV 98
Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
           +L     VN      + ND G+T LH++    H++IV +++K   D +NA++    TA D
Sbjct: 99  LLKHGADVNA-----YDND-GHTPLHLAAKYGHLEIVEVLLKHGAD-VNAQDKFGKTAFD 151
Query: 133 M 133
           +
Sbjct: 152 I 152

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 58  LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
           +H AA+   L+ L+T+L +   VN++D      +EGN  LH++    H+++V  +VK   
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIED------NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 118 DQINARNSKDNTAMDMVKFH 137
             +  RN K +TA D+ + +
Sbjct: 128 SNVGHRNHKGDTACDLARLY 147

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 58  LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
           +H AA+   L+ L+T+L +   VN++D      +EGN  LH++    H+++V  +VK   
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIED------NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 118 DQINARNSKDNTAMDMVKFH 137
             +  RN K +TA D+ + +
Sbjct: 128 SNVGHRNHKGDTACDLARLY 147

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
           G+TPLH  A  G+++++ + L      +    +   T LH+AA    LE++E +L +   
Sbjct: 47  GLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
           VN  D+       G+T LH++    H++IV +++K   D +NA++    TA D+
Sbjct: 106 VNAFDM------TGSTPLHLAADEGHLEIVEVLLKYGAD-VNAQDKFGKTAFDI 152

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 58  LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
           +H AA+   L+ L+T+L +   VN++D      +EGN  LH++    H+++V  +VK   
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIED------NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 118 DQINARNSKDNTAMDMVKFH 137
             +  RN K +TA D+ + +
Sbjct: 128 SNVGHRNHKGDTACDLARLY 147

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 20  GVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
           G+TPLH V   G+   +++L K+ A    S         T LH+AA    LE++E +L +
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNAS----DKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 77  LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
              VN  D       +G T LH++    H++IV +++K   D +NA++    TA D+
Sbjct: 103 GADVNAMDY------QGYTPLHLAAEDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDI 152

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 58  LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
           +H AA+   L+ L+T+L     VN++D      +EGN  LH++    H+++V  +VK   
Sbjct: 74  IHDAARAGFLDTLQTLLENQADVNIED------NEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 118 DQINARNSKDNTAMDMVKFH 137
             +  RN K +TA D+ + +
Sbjct: 128 SNVGHRNHKGDTACDLARLY 147

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 13  VRVQGREGVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIRKE---TALHVAAKYDR 66
           V     +G TPLH  A  G+   V++L K  A        V  R     T LH+AA    
Sbjct: 40  VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA-------DVNARDTDGWTPLHLAADNGH 92
Query: 67  LEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSK 126
           LE++E +L +   VN  D        G T LH++  R H++IV +++K   D +NA++  
Sbjct: 93  LEIVEVLLKYGADVNAQDAY------GLTPLHLAADRGHLEIVEVLLKHGAD-VNAQDKF 145
Query: 127 DNTAMDM 133
             TA D+
Sbjct: 146 GKTAFDI 152

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
           V  +   G TPLH  A  G+++++   L    + +  V     T L +AA +  LE++E 
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEV 98
Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
           +L     VN +D+      EG+T LH++    H++IV +++K   D +NA++    TA D
Sbjct: 99  LLKNGADVNANDM------EGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFD 151
Query: 133 M 133
           +
Sbjct: 152 I 152

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
           G TPLH  A  G+++++   L    +   + ++   T LH+AA+   LE++E +L     
Sbjct: 47  GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL-GVTPLHLAARRGHLEIVEVLL----- 100
Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
            N  D+ N  +  G T LH++  R H++IV +++K   D +NA++    TA D+
Sbjct: 101 KNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD-VNAQDKFGKTAFDI 152

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 17/101 (16%)
Query: 20  GVTPLHYVAEKGNVDLLCKFLA-----ACPESILQVTIRKETALHVAAKYDRLEVLETML 74
           G TPLH  A +G+V+ +   L      AC      +T +  T LHVAAKY ++ V E +L
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRVAELLL 166
Query: 75  GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
                   D   N     G T LH+++  +++ IV+L++ R
Sbjct: 167 ------ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 53  RKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLI 112
           +  T LH+AA YD LE++E +L     VN  D      ++G+T LH++    H++IV ++
Sbjct: 46  KGNTPLHLAADYDHLEIVEVLLKHGADVNAHD------NDGSTPLHLAALFGHLEIVEVL 99
Query: 113 VKRVRDQINARNSKDNTAMDM 133
           +K   D +NA++    TA D+
Sbjct: 100 LKHGAD-VNAQDKFGKTAFDI 119

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
           G TPLH  A  G+++++ K L      +        T LH+AA+   LEV++ +L     
Sbjct: 2   GRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----E 56
Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQ 139
              D  +N K+  G T LH++    H+++V+L+++   D +NA++    T +     HL 
Sbjct: 57  AGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPL-----HLA 108
Query: 140 TKPEFEELKSMVRKAG 155
            +    E+  ++ +AG
Sbjct: 109 ARNGHLEVVKLLLEAG 124

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWL 77
           ++G TPLH  A+ G+ + + K L+   + +   +    T LH+AAK    E+++ +L   
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINAR 123
             VN       ++ +GNT  H++    H +IV+L+  +  D +NAR
Sbjct: 66  ADVNA------RSKDGNTPEHLAKKNGHHEIVKLLDAKGAD-VNAR 104

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 20  GVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
           G TPLH  A+ G+   V++L K+ A     +        T LH+AA    LE++E +L  
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGA----DVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 77  LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
              VN  D       EG T LH++    H++IV +++K   D +NA++    TA D+
Sbjct: 103 GADVNAKDY------EGFTPLHLAAYDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDI 152

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 22  TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN 81
           +PLH  AE G+VD+ C  L     +I   +  + T L  AA+ + LE ++ +      + 
Sbjct: 13  SPLHAAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL------IK 65
Query: 82  MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
              +++ K+ EG+T LH++  + H ++V+ ++   +  +N ++    T M
Sbjct: 66  AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 13  VRVQGREGVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEV 69
           V      G TPLH  A  G+   V++L K  A    S     +   T LH+AA +  LE+
Sbjct: 40  VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS----DVFGYTPLHLAAYWGHLEI 95
Query: 70  LETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT 129
           +E +L      N  D+ N  + +G T LH++    +++IV +++K   D +NA++    T
Sbjct: 96  VEVLL-----KNGADV-NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD-VNAQDKFGKT 148
Query: 130 AMDM 133
           A D+
Sbjct: 149 AFDI 152

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 56  TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
           T LH+AA+   LE++E +L +   VN +D  N+    G T LH++  R H++IV +++K 
Sbjct: 49  TPLHLAAQLGHLEIVEVLLKYGADVNAED--NF----GITPLHLAAIRGHLEIVEVLLKH 102
Query: 116 VRDQINARNSKDNTAMDM 133
             D +NA++    TA D+
Sbjct: 103 GAD-VNAQDKFGKTAFDI 119

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
           G TPLH  A  G+++++   L    +     ++   T LH+AA    LEV+E +L     
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV-TPLHLAADRGHLEVVEVLLKNGAD 105
Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
           VN +D        G T LH++ +  H++IV +++K   D +NA++    TA D+
Sbjct: 106 VNAND------HNGFTPLHLAANIGHLEIVEVLLKHGAD-VNAQDKFGKTAFDI 152

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 56  TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
           T LH+AAK   LE++E +L     VN  DI  W    G T LH++ +  H++IV ++++ 
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADVNASDI--W----GRTPLHLAATVGHLEIVEVLLEY 102
Query: 116 VRDQINARNSKDNTAMDM 133
             D +NA++    TA D+
Sbjct: 103 GAD-VNAQDKFGKTAFDI 119

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
           G+TPLH  A  G ++++   L    + +        T LH+AA    LE++E +L     
Sbjct: 39  GLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD 97
Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
           VN  D   W      T LH++     ++IV +++K   D +NA+++   TA D+
Sbjct: 98  VNAYDRAGW------TPLHLAALSGQLEIVEVLLKHGAD-VNAQDALGLTAFDI 144

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 56  TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
           T LH+AAK   LE++E +L     VN  DI  W    G T LH++ +  H++IV ++++ 
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADVNARDI--W----GRTPLHLAATVGHLEIVEVLLEY 102
Query: 116 VRDQINARNSKDNTAMDM 133
             D +NA++    TA D+
Sbjct: 103 GAD-VNAQDKFGKTAFDI 119

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFL--AACPESILQVTIRKETALHVAAKYDRLEVL 70
           V    + G TPLHY A K   ++    L   A P++       + TA+H AA    L+++
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY---EATAMHRAAAKGNLKMI 156
Query: 71  ETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
             +L +    N+ D       EGNT LH++     ++  +L+V +    I   N ++ T 
Sbjct: 157 HILLYYKASTNIQDT------EGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTP 209
Query: 131 MDMVKFHL 138
           + + K  L
Sbjct: 210 LQVAKGGL 217

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFL--AACPESILQVTIRKETALHVAAKYDRLEVL 70
           V    + G TPLHY A K   ++    L   A P++       + TA+H AA    L+++
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY---EATAMHRAAAKGNLKMI 155
Query: 71  ETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
             +L +    N+ D       EGNT LH++     ++  +L+V +    I   N ++ T 
Sbjct: 156 HILLYYKASTNIQDT------EGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTP 208
Query: 131 MDMVKFHL 138
           + + K  L
Sbjct: 209 LQVAKGGL 216

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 56  TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
           T LH+AAK   LE++E +L     VN  D  +W    G T LH++ +  H++IV ++++ 
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADVNASD--SW----GRTPLHLAATVGHLEIVEVLLEY 102
Query: 116 VRDQINARNSKDNTAMDM 133
             D +NA++    TA D+
Sbjct: 103 GAD-VNAQDKFGKTAFDI 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
2rfa_A	232	Transient receptor potential cation channel subfa	1e-13
2rfa_A	232	Transient receptor potential cation channel subfa	2e-09
2rfa_A	232	Transient receptor potential cation channel subfa	1e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-06
2etb_A	256	Transient receptor potential cation channel subfam	8e-09
2etb_A	256	Transient receptor potential cation channel subfam	8e-08
2etb_A	256	Transient receptor potential cation channel subfam	1e-07
2etb_A	256	Transient receptor potential cation channel subfam	5e-07
2etb_A	256	Transient receptor potential cation channel subfam	2e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-08
2pnn_A	273	Transient receptor potential cation channel subfa	3e-08
2pnn_A	273	Transient receptor potential cation channel subfa	8e-08
2pnn_A	273	Transient receptor potential cation channel subfa	9e-08
2pnn_A	273	Transient receptor potential cation channel subfa	1e-07
2pnn_A	273	Transient receptor potential cation channel subfa	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	1e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-04

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
             +PL   A++ +V  L K L      + Q     ETALH+AA YD LE    ++     
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLM--EAA 60

Query: 80  VN-MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
              + + +  +  EG T LHI++   ++ +VR ++ R    ++AR +       
Sbjct: 61  PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS-VSARATGSVFHYR 113

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 18/132 (13%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK----ETALHVAAKYDRLE 68
           V  +G  G T LH  A   N++     + A PE + +    +    +TALH+A     + 
Sbjct: 30  VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVN 89

Query: 69  VLETMLGWLRY---VNMDDI-------LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRD 118
           ++  +   L     V+            +     G   L  +      +IVRL+++   D
Sbjct: 90  LVRAL---LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD 146

Query: 119 QINARNSKDNTA 130
            I A++S  NT 
Sbjct: 147 -IRAQDSLGNTV 157

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 67.1 bits (165), Expect = 4e-13
 Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 13/127 (10%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
              PLH    +     + + L + P  +LQ        LH +  +   E+   +L  +  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVR-LIVKRVRDQINARNSKDNTA-------- 130
           VN+DD     +D G T  HI+ S  ++++V+ L  + ++  +N   ++  T         
Sbjct: 62  VNLDDY---PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 118

Query: 131 -MDMVKF 136
             ++ +F
Sbjct: 119 WFEVSQF 125

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.4 bits (158), Expect = 3e-12
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 9   DRNLVRVQGREGVTPLHYVAEKGNVD----LLCKFLAACPESILQVTIRKETALHVAAKY 64
           + NL       G TP H     GN++    L  + L      + ++T +  T LH+A   
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP---DLNKITNQGVTCLHLAVGK 117

Query: 65  DRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN 124
              EV + ++      N   +   K+      LH + S   ++++ L+    +  +N ++
Sbjct: 118 KWFEVSQFLIE-----NGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171

Query: 125 SKDNTA 130
            +  T 
Sbjct: 172 KQGWTP 177

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 20/128 (15%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHVAAKYDRLEVLETML 74
           +GVT LH    K   ++  +FL    A    S+       +  LH AA    L+++E + 
Sbjct: 106 QGVTCLHLAVGKKWFEV-SQFLIENGA----SVRIKDKFNQIPLHRAASVGSLKLIELLC 160

Query: 75  GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM--- 131
           G    +    + NW++ +G T L  +++  H     L+V++   + +  ++K   A    
Sbjct: 161 G----LGKSAV-NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215

Query: 132 ---DMVKF 136
               + KF
Sbjct: 216 LNEQVKKF 223

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.7 bits (94), Expect = 5e-04
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 5   LIDFDRNLVRVQGREGVTPLHYVAEKGNVD----LLCKFLAACPESILQVTIRKETALHV 60
           L    ++ V  Q ++G TPL +   +G+ D    L+ K+ A        V  +   A  V
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA----EYDLVDNKGAKAEDV 214

Query: 61  AAKYDRLEVL 70
           A      +  
Sbjct: 215 ALNEQVKKFF 224

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 67.1 bits (165), Expect = 1e-12
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 2   VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVA 61
            L L D     V + G      L   A  GN + L   L     +      RK T LH+A
Sbjct: 7   ALDLADPSAKAV-LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65

Query: 62  AKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQIN 121
           A Y+R+ +++ +L     V+       K+  G   LH + S  H ++  L++K     +N
Sbjct: 66  AGYNRVRIVQLLLQHGADVHA------KDKGGLVPLHNACSYGHYEVTELLLKHGAC-VN 118

Query: 122 ARNSKDNTA 130
           A +    T 
Sbjct: 119 AMDLWQFTP 127

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 31/128 (24%)

Query: 19  EGVTPLHYVAEKGNVDLL--CKFLAACPESILQVTIRK-----------ETALHVAAKYD 65
              T LH      +       + L           +RK            T LHVAA+  
Sbjct: 210 SHETALHCAVASLHPKRKQVAELL-----------LRKGANVNEKNKDFMTPLHVAAERA 258

Query: 66  RLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNS 125
             +V+E +       +   + N  +  G T LH +    H+Q  RL++    D  +  + 
Sbjct: 259 HNDVMEVLHK-----HGAKM-NALDSLGQTALHRAALAGHLQTCRLLLSYGSD-PSIISL 311

Query: 126 KDNTAMDM 133
           +  TA  M
Sbjct: 312 QGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 37/155 (23%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHVAAKYDRLE 68
           V        TPLH  A K  V+ +C  L    A        V    ++A+ +A   +  E
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVE-VCSLLLSHGA----DPTLVNCHGKSAVDMAPTPELRE 171

Query: 69  VLE------TMLGWLRYVNMDDI---------LNWKNDEGNTLLHISISRSH---IQIVR 110
            L       ++L   R  ++  +            +     T LH +++  H    Q+  
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231

Query: 111 LIVKRVRDQINARNSKDNTA---------MDMVKF 136
           L++++  + +N +N    T           D+++ 
Sbjct: 232 LLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEV 265

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.5 bits (127), Expect = 7e-08
 Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWL 77
           + G+ PLH     G+ ++  + L      +  + + + T LH AA  +R+EV   +L   
Sbjct: 89  KGGLVPLHNACSYGHYEV-TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS-- 145

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
              +  D     N  G + + ++ +    + +  
Sbjct: 146 ---HGADP-TLVNCHGKSAVDMAPTPELRERLTY 175

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 32/139 (23%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFL--------AACPESILQVT---------IRK---- 54
               G + +         + L  +         AA    + +V           ++    
Sbjct: 153 VNCHGKSAVDMAPTPELRERL-TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211

Query: 55  ETALHVAAK---YDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
           ETALH A       R +V E +L         ++ N KN +  T LH++  R+H  ++ +
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLR-----KGANV-NEKNKDFMTPLHVAAERAHNDVMEV 265

Query: 112 IVKRVRDQINARNSKDNTA 130
           + K     +NA +S   TA
Sbjct: 266 LHKHGAK-MNALDSLGQTA 283

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 15/114 (13%), Positives = 42/114 (36%), Gaps = 20/114 (17%)

Query: 17  GREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
           G  G + L          L  ++             +K+  L  A   +  +++  +   
Sbjct: 1   GEFGKSALDLADPSAKAVLTGEY-------------KKDELLEAARSGNEEKLMALLTP- 46

Query: 77  LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
                  +  +  +   +T LH++   + ++IV+L+++   D ++A++      
Sbjct: 47  ----LNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVP 94

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 17/114 (14%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
           V  + ++ +TPLH  AE+ + D + + L      +  +    +TALH AA    L+    
Sbjct: 240 VNEKNKDFMTPLHVAAERAHND-VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRL 298

Query: 73  ML--GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN 124
           +L  G        D  +  + +G T   +     +  + +++ +     +   +
Sbjct: 299 LLSYG-------SDP-SIISLQGFTAAQM----GNEAVQQILSEST--PMRTSD 338

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 12/131 (9%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
           Q     TPLH        ++  + L            R  T LH+A +   L  +  +  
Sbjct: 41  QNNLQQTPLHLAVITNQPEI-AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ 99

Query: 76  WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKD-NTA---- 130
                ++  IL   N  G+T LH++    ++ IV L+V    D +NA+   +  TA    
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLA 158

Query: 131 -----MDMVKF 136
                 D+V  
Sbjct: 159 VDLQNPDLVSL 169

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 60.6 bits (148), Expect = 6e-11
 Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 14/120 (11%)

Query: 19  EGVTPLHYVAEKGNVDL---LCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
           +G + LH         L   + + +      +      ++T LH+A   ++ E+ E +LG
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66

Query: 76  WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR-----VRDQINARNSKDNTA 130
                   D    ++  GNT LH++  +  +  V ++ +      +   + A N   +T 
Sbjct: 67  -----AGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 31/127 (24%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK------------ETALHVAAKYDR 66
            G T LH  +  G + +  + L           +               TALH+A     
Sbjct: 116 NGHTCLHLASIHGYLGI-VELL-----------VSLGADVNAQEPCNGRTALHLAVDLQN 163

Query: 67  LEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQI-NARNS 125
            +++  +L         D+ N    +G +   ++  R   +I + + +   + +     S
Sbjct: 164 PDLVSLLLK-----CGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217

Query: 126 KDNTAMD 132
           +D  + D
Sbjct: 218 EDEESYD 224

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 15  VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML 74
           +  + G+TPLH VA++G+V +    L      +   T    T LHVA+ Y  +++++ +L
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPV-ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331

Query: 75  GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
                 +  D+ N K   G + LH +  + H  IV L++K      N  +S   T + +
Sbjct: 332 Q-----HQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 64.4 bits (158), Expect = 1e-11
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 15/128 (11%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFL---AACPESILQVTIRKETALHVAAKYDRLEVLET 72
             R G TPLH  +  GN+ L  KFL    A   +    T    + LH AA+    +++  
Sbjct: 307 TTRMGYTPLHVASHYGNIKL-VKFLLQHQADVNA---KTKLGYSPLHQAAQQGHTDIVTL 362

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRD--QINARNSKDNTA 130
           +L      N     N  + +G T L I+    +I +  ++     +   +   +    + 
Sbjct: 363 LLK-----NGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 416

Query: 131 MDMVKFHL 138
            + V   L
Sbjct: 417 PETVDEIL 424

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 17/133 (12%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
               G  G+TPLH  +  G++  + K L     S     ++ ET LH+AA+    EV + 
Sbjct: 7   GGGGGESGLTPLHVASFMGHLP-IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY 65

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM- 131
           +L      N   + N K  +  T LH +    H  +V+L+++   +  N   +  +T + 
Sbjct: 66  LLQ-----NKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLH 118

Query: 132 --------DMVKF 136
                   + V  
Sbjct: 119 IAAREGHVETVLA 131

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 17/133 (12%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
             +    G TPLH  A +G+V+     L     S   +T +  T LHVAAKY ++ V E 
Sbjct: 106 PNLATTAGHTPLHIAAREGHVET-VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA-- 130
           +L    + N           G T LH+++  +++ IV+L++ R     ++      T   
Sbjct: 165 LLERDAHPNA------AGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLH 217

Query: 131 -------MDMVKF 136
                  +++ + 
Sbjct: 218 IAAKQNQVEVARS 230

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.5 bits (153), Expect = 4e-11
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 16/120 (13%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHVAAKYDRLEVLE 71
            G+ G+TPLH      N+D+  K L         S         T LH+AAK +++EV  
Sbjct: 175 AGKNGLTPLHVAVHHNNLDI-VKLLLPRGG----SPHSPAWNGYTPLHIAAKQNQVEVAR 229

Query: 72  TMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
           ++L            N ++ +G T LH++    H ++V L++ +  +  N  N    T +
Sbjct: 230 SLLQ-----YGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPL 282

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.5 bits (153), Expect = 5e-11
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
           V  + ++  TPLH  A  G+ ++  K L     +    T    T LH+AA+   +E +  
Sbjct: 73  VNAKAKDDQTPLHCAARIGHTNM-VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
           +L                 +G T LH++     +++  L+++R     NA      T 
Sbjct: 132 LLE-----KEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTP 182

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 23/134 (17%)

Query: 15  VQGREGVTPLHYVAEKGNVDLLCKFL---AACPESILQVTIRKETALHVAAKYDRLEVLE 71
                G TPLH  A++  V++  + L             +++  T LH+AA+    E++ 
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEV-ARSLLQYGGSAN---AESVQGVTPLHLAAQEGHAEMVA 262

Query: 72  TMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA- 130
            +L   +  N     N  N  G T LH+     H+ +  +++K     ++A      T  
Sbjct: 263 LLLS--KQAN----GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPL 315

Query: 131 --------MDMVKF 136
                   + +VKF
Sbjct: 316 HVASHYGNIKLVKF 329

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.8 bits (156), Expect = 5e-12
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 12/112 (10%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
              T       KG   L+     A            +  LH AAK   L  L   L    
Sbjct: 44  MSDTNWWKGTSKGRTGLIPSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLD--- 94

Query: 79  YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
             N   + N  +  G+T L+ +    H  IV ++  +   ++N +N   +TA
Sbjct: 95  --NRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTA 143

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 7/123 (5%)

Query: 11  NLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVL 70
           N V  Q      PLH  A++GN+  L +        +  +     TAL+ A      +++
Sbjct: 64  NYVAEQAESIDNPLHEAAKRGNLSWL-RECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

Query: 71  ETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
           E ML      N++  LN +N  G+T LH +  + +  IV+L++ +     + RN +   A
Sbjct: 123 E-ML--FTQPNIE--LNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLA 176

Query: 131 MDM 133
            DM
Sbjct: 177 FDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 13/121 (10%)

Query: 13  VRVQGREGVTPLHYVAEKGNVD---LLCKFLAACPESILQVTIRKETALHVAAKYDRLEV 69
           V    + G T L++    G+ D   +L            Q     +TALH AA     ++
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN---QQNKLGDTALHAAAWKGYADI 155

Query: 70  LETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT 129
           ++ +L            + +N E      ++ + +   +++             N++D  
Sbjct: 156 VQLLLA-----KGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAV-RTLSNAEDYL 208

Query: 130 A 130
            
Sbjct: 209 D 209

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 13/113 (11%), Positives = 33/113 (29%), Gaps = 13/113 (11%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWL 77
           + G   +               L      I+ +T   +T         R  ++       
Sbjct: 10  KPGQVKVFRALYTFEPRT-PDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP------ 62

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
                 + +  + +  +  LH +  R ++  +R  +      +N  +   +TA
Sbjct: 63  -----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTA 109

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 7/91 (7%)

Query: 15  VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML 74
            Q + G T LH  A KG  D+  + L A         I K+ A  +A       +L+   
Sbjct: 135 QQNKLGDTALHAAAWKGYADI-VQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQ 193

Query: 75  GWLRYVNMDDILNWKNDEGNTLLHISISRSH 105
           G       D +    N E       S    H
Sbjct: 194 G------TDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 7/94 (7%), Positives = 24/94 (25%), Gaps = 21/94 (22%)

Query: 55  ETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
           +  +  A         + +      +   DI  +  D  +T      S+    ++     
Sbjct: 13  QVKVFRALYTFEPRTPDELY-----IEEGDI-IYITDMSDTNWWKGTSKGRTGLIP---- 62

Query: 115 RVRDQINARNSKDNTA---------MDMVKFHLQ 139
              + +  +    +           +  ++  L 
Sbjct: 63  --SNYVAEQAESIDNPLHEAAKRGNLSWLRECLD 94

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.1 bits (152), Expect = 8e-12
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 9/113 (7%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
           E +  +     +GN   +  +L      + Q      + LH A +  R  V+E ++    
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM--- 60

Query: 79  YVNMDDILNWKNDEGNTLLHISISRSHIQIVR-LIVKRVRDQINARNSKDNTA 130
                 I N  N   +T LH++ S  H  IV+ L+  +    INA N   N  
Sbjct: 61  --RGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKA--DINAVNEHGNVP 108

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 57.4 bits (140), Expect = 3e-10
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 16/137 (11%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKET 56
            V   +D   N +      G +PLH+   +G    + + L    A     I  +    +T
Sbjct: 20  AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSA-VVEMLIMRGA----RINVMNRGDDT 74

Query: 57  ALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRV 116
            LH+AA +   ++++ +L        D  +N  N+ GN  LH +      Q+   +V   
Sbjct: 75  PLHLAASHGHRDIVQKLLQ----YKAD--INAVNEHGNVPLHYACFWGQDQVAEDLVANG 128

Query: 117 RDQINARNSKDNTAMDM 133
              ++  N      +D 
Sbjct: 129 AL-VSICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 54.0 bits (131), Expect = 6e-09
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 12/122 (9%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWL 77
           R   TPLH  A  G+ D+  + L      I  V       LH A  + + +V E ++   
Sbjct: 70  RGDDTPLHLAASHGHRDI-VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA-- 126

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFH 137
              N   + +  N  G   +  + +     +     K  ++ +N    KD       K  
Sbjct: 127 ---NGALV-SICNKYGEMPVDKAKAPLRELLRERAEKMGQN-LNRIPYKDTFW----KGT 177

Query: 138 LQ 139
            +
Sbjct: 178 TR 179

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 12/118 (10%)

Query: 19  EGVTPLHYVAEKGNVD---LLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
           +G TPLH    +GN+     L          +      ++T LH+A       V+  ++ 
Sbjct: 8   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67

Query: 76  WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR---VRDQINARNSKDNTA 130
                         +  G T  H++        +R ++         + ARN    TA
Sbjct: 68  -----AGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 17/122 (13%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHVAAKYDRLEVLE 71
                 TPLH         +  + L    A    S + +    +TA H+A ++     L 
Sbjct: 42  YNNLRQTPLHLAVITTLPSV-VRLLVTAGA----SPMALDRHGQTAAHLACEHRSPTCLR 96

Query: 72  TML--GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKD-N 128
            +L       ++    L  +N +G T LH++++    + V+L+++R  D I+A + K   
Sbjct: 97  ALLDSAAPGTLD----LEARNYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGR 151

Query: 129 TA 130
           + 
Sbjct: 152 SP 153

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.5 bits (140), Expect = 9e-10
 Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 18  REGVTPLHYVAEKGNVD---LLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML 74
           R G T  H   E  +      L    A     +        TALHVA   +  E ++ +L
Sbjct: 77  RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL 136

Query: 75  GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
                ++  DI +     G + L  ++  + + +V+L+++   + +NA+    ++A
Sbjct: 137 ERGADIDAVDIKS-----GRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSA 186

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 54.4 bits (132), Expect = 1e-08
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 11/94 (11%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML--GWL 77
           G +PL +  E  ++ +  + L     ++        +ALH A+    L ++ T++  G  
Sbjct: 150 GRSPLIHAVENNSLSM-VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG-- 206

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
                 D  + KN   +T L ++ SR  I I+R 
Sbjct: 207 -----ADS-SLKNCHNDTPLMVARSRRVIDILRG 234

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 85  ILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQ---INARNSKDNTA 130
           +    +++G+T LHI++ + ++  V  +V   +     ++  N+   T 
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP 49

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 26/139 (18%)

Query: 15  VQGREGVTPLHYVAEKGNVDL-LCKFLAACPESILQ------VTIRKETALHVAAKYDRL 67
           V+  +G T LH+    G   L + K L      +             ET L  A ++   
Sbjct: 133 VKHCKGQTALHWCVGLGPEYLEMIKIL------VQLGASPTAKDKADETPLMRAMEFRNR 186

Query: 68  EVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVR-LIVKRVRDQINARNSK 126
           E L+ M+  +   +   + ++ N +GN+ LH +I  +   +    +   +   +N  +++
Sbjct: 187 EALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFVEMGI--DVNMEDNE 243

Query: 127 DNTA---------MDMVKF 136
                        + + K 
Sbjct: 244 HTVPLYLSVRAAMVLLTKE 262

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 21/130 (16%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFL---AACPES----------ILQVTIRKETALHVAAKYD 65
           E   PL+       V L  K L                   +L   +     +  AA   
Sbjct: 243 EHTVPLYLSVRAAMVLL-TKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS 301

Query: 66  RLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNS 125
           + EVL+ +        +D++     + G         ++   + R+ +      +  R+ 
Sbjct: 302 KQEVLQLLQE-----KLDEV-VRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAP-VRTRSR 354

Query: 126 KDNTAMDMVK 135
               +  + K
Sbjct: 355 SRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 9e-11
 Identities = 16/121 (13%), Positives = 44/121 (36%), Gaps = 11/121 (9%)

Query: 16  QGREGVTPLHYVAEKGNVD----LLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLE 71
           + +   TPL    E  N +    ++    +     +     +  + LH A   +  +V  
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM 228

Query: 72  TMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
             +     VNM      +++E    L++S+  + + + + ++++  D    +    +   
Sbjct: 229 RFVEMGIDVNM------EDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGT 281

Query: 132 D 132
            
Sbjct: 282 T 282

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 31/130 (23%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWL 77
             G  P+H        DL    L      +     R +    +  + D  EV E      
Sbjct: 82  WHGQKPIHLAVMANKTDL-VVAL------VEGAKERGQMPESLLNECDEREVNEI----- 129

Query: 78  RYVNMDDILNWKNDEGNTLLHISISR--SHIQIVRLIVKRVRDQINARNSKDNTA----- 130
                    + K+ +G T LH  +     ++++++++V+       A++  D T      
Sbjct: 130 ------GS-HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAM 181

Query: 131 ----MDMVKF 136
                + +  
Sbjct: 182 EFRNREALDL 191

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.6 bits (127), Expect = 6e-08
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 27/145 (18%)

Query: 5   LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKY 64
           + DF +        E +  +H  A KG  D   + L     S         TALH+A K+
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTD-EVRRLIETGVSPTIQNRFGCTALHLACKF 63

Query: 65  DRLEVLETML----------GW--LRY---VNMDDI----LNWKNDEGNTLLHISISRSH 105
             ++  + +           G   +      N  D+    +    + G     +      
Sbjct: 64  GCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDE 123

Query: 106 IQIVRLIVKRVRDQINARNSKDNTA 130
            ++  +         + ++ K  TA
Sbjct: 124 REVNEI-------GSHVKHCKGQTA 141

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 62.0 bits (152), Expect = 2e-11
 Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 16/133 (12%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
            +++ +   +PLH  AE G+VD+ C  L     +I   +  + T L  AA+ + LE ++ 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM- 131
           ++          + + K+ EG+T LH++  + H ++V+ ++   +  +N ++    T M 
Sbjct: 63  LIK-----AGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116

Query: 132 --------DMVKF 136
                   D+VK 
Sbjct: 117 WATEYKHVDLVKL 129

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.0 bits (144), Expect = 3e-10
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFL---AACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
           +  TPL   AE  +++   K+L    A  +          T LH+AAK    EV++ +L 
Sbjct: 43  DQRTPLMEAAENNHLEA-VKYLIKAGALVDP---KDAEGSTCLHLAAKKGHYEVVQYLLS 98

Query: 76  WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
                   D+ N ++D G T +  +    H+ +V+L++ +  D IN R++++N  
Sbjct: 99  ----NGQMDV-NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENIC 147

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.4 bits (140), Expect = 9e-10
 Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWL 77
            EG T LH  A+KG+ +++   L+     +        T +  A +Y  +++++ +L   
Sbjct: 75  AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS-- 132

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
                 DI N +++E N  LH +     + I  +++    D ++A N   ++ 
Sbjct: 133 ---KGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSP 180

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
           E    LH+ A  G VD+  + L A    +  V I  ++ LH+AA+ +R + +   L    
Sbjct: 143 EENICLHWAAFSGCVDI-AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS--- 198

Query: 79  YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQ 119
             + D  +  KN EG T L  +   S +     + K ++D 
Sbjct: 199 -RDSD--VTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 55.1 bits (134), Expect = 4e-09
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 16/133 (12%)

Query: 5   LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHV 60
           L+   +  V  Q   G TP+ +  E  +VD L K L    +     I      +   LH 
Sbjct: 96  LLSNGQMDVNCQDDGGWTPMIWATEYKHVD-LVKLLLSKGS----DINIRDNEENICLHW 150

Query: 61  AAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQI 120
           AA    +++ E +L        D  L+  N  G++ LHI+   +    V L + R  D +
Sbjct: 151 AAFSGCVDIAEILLA----AKCD--LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-V 203

Query: 121 NARNSKDNTAMDM 133
             +N +  T +  
Sbjct: 204 TLKNKEGETPLQC 216

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.7 bits (146), Expect = 9e-11
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 19/132 (14%)

Query: 5   LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETAL 58
            I    +L     R G T LH  A     D   K L      +              T L
Sbjct: 10  FIYQGASLHNQTDRTGETALHLAARYSRSD-AAKRL------LEASADANIQDNMGRTPL 62

Query: 59  HVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRD 118
           H A   D   V + ++      N    L+ +  +G T L ++   +   ++  ++    D
Sbjct: 63  HAAVSADAQGVFQILIR-----NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117

Query: 119 QINARNSKDNTA 130
            +NA +    +A
Sbjct: 118 -VNAVDDLGKSA 128

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 55.5 bits (135), Expect = 3e-09
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 15/119 (12%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHVAAKYDRLEVLE 71
           Q   G TPLH         +  + L    A     +        T L +AA+     +LE
Sbjct: 54  QDNMGRTPLHAAVSADAQGV-FQILIRNRAT---DLDARMHDGTTPLILAARLAVEGMLE 109

Query: 72  TMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
            ++      +  D+ N  +D G + LH + + +++    +++K   +  + +N+++ T 
Sbjct: 110 DLIN-----SHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETP 161

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 55.1 bits (134), Expect = 4e-09
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 19/99 (19%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLET 72
            G + LH+ A   NVD     L      +           R+ET L +AA+    E  + 
Sbjct: 124 LGKSALHWAAAVNNVDA-AVVL------LKNGANKDMQNNREETPLFLAAREGSYETAKV 176

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
           +L      +  +  +  +        I+  R H  IVRL
Sbjct: 177 LLD-----HFANR-DITDHMDRLPRDIAQERMHHDIVRL 209

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 51.3 bits (124), Expect = 7e-08
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 21/94 (22%)

Query: 55  ETALHVAAKYDRLEVLETML--GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVR-L 111
           ETALH+AA+Y R +  + +L           D  N +++ G T LH ++S     + + L
Sbjct: 26  ETALHLAARYSRSDAAKRLLEAS-------ADA-NIQDNMGRTPLHAAVSADAQGVFQIL 77

Query: 112 IVKRVRDQINARNSKDNTA---------MDMVKF 136
           I  R  D ++AR     T            M++ 
Sbjct: 78  IRNRATD-LDARMHDGTTPLILAARLAVEGMLED 110

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 17/117 (14%)

Query: 19  EGVTPLHYVAEKGNVD---LLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML- 74
           E    L   A+ G+V+    LC   +    +   +  R+ T LH AA Y+R+ V+E +L 
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQSV---NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 75  -GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
            G        D+ + K+  G   LH + S  H ++  L+VK     +N  +    T 
Sbjct: 64  HG-------ADV-HAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTP 111

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 50.1 bits (121), Expect = 1e-07
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 24/101 (23%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLET 72
            G+ PLH     G+ ++  + L      +          + K T LH AA   + E+ + 
Sbjct: 74  GGLVPLHNACSYGHYEV-AELL------VKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126

Query: 73  ML--GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
           +L  G        D    KN +GNT L + +      I  L
Sbjct: 127 LLQHG-------ADP-TKKNRDGNTPLDL-VKDGDTDIQDL 158

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 25/121 (20%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQ---VTIR----KETALHVAAKYDRLEVLE 71
           E    L    +  +VDL  + L      +     V  +      T LH A +  R +++E
Sbjct: 4   EDNHLLIKAVQNEDVDL-VQQL------LEGGANVNFQEEEGGWTPLHNAVQMSREDIVE 56

Query: 72  TML--GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT 129
            +L  G        D    +   G T   ++     +++++L + +  D +N  +    T
Sbjct: 57  LLLRHG-------ADP-VLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFT 107

Query: 130 A 130
           A
Sbjct: 108 A 108

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 58.6 bits (143), Expect = 4e-10
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
           + + G TP    A  G+V LL K   +    + +      TA   AA Y +++ L+ +  
Sbjct: 68  RKKNGATPFLLAAIAGSVKLL-KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 76  WLRYVNMDD----ILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
               VN+              G T L  +  + H++++++++  +   +NA ++    A
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 56.7 bits (138), Expect = 2e-09
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 14/130 (10%)

Query: 7   DFDRNLVRVQGREGVTPLHYVAEKGNVD----LLCKFLAACPESILQVTIRKETALHVAA 62
              +       + G T L   AEKG+V+    LL +  A     +         AL  A 
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA----DVNACDNMGRNALIHAL 190

Query: 63  KYDRLEVLETMLGWL--RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQI 120
                  +E +   L     ++    N + + G T L +++ + H+ +V+ ++++   +I
Sbjct: 191 LSSDDSDVEAITHLLLDHGADV----NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

Query: 121 NARNSKDNTA 130
           N  +S   TA
Sbjct: 247 NDTDSDGKTA 256

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.0 bits (118), Expect = 8e-07
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 20/103 (19%)

Query: 18  REGVTPLHYVAEKGNVDLLC---KFLAACPESILQ------VTIRKETALHVAAKYDRLE 68
             G   L +     +   +      L      +           R +T L +A +   L 
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLL------LDHGADVNVRGERGKTPLILAVEKKHLG 233

Query: 69  VLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
           +++  L  L   +++  +N  + +G T L +++     +I  L
Sbjct: 234 LVQ-RL--LEQEHIE--INDTDSDGKTALLLAVELKLKKIAEL 271

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 18/126 (14%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
           G   L                 A    + +        L  ++     ++++ ++     
Sbjct: 5   GQVSLPPGKRTNLRKT-GSERIAHGMRV-KFNPLPLALLLDSSLEGEFDLVQRIIY---- 58

Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM-------- 131
             +DD  +  NDEG T LH ++   H +IV+ +V+   + +NA +S   T +        
Sbjct: 59  -EVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNN 115

Query: 132 -DMVKF 136
             + KF
Sbjct: 116 VQVCKF 121

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
             +  L   + +G  D L + +    +          TALH A      E+++ ++    
Sbjct: 36  LPLALLLDSSLEGEFD-LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ--F 92

Query: 79  YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDN 128
            VN    +N  + +G T LH + S +++Q+ + +V+     + A    D 
Sbjct: 93  GVN----VNAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDM 137

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 17/118 (14%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLET 72
           EG+T LH     G+ + + KFL      +              T LH AA  + ++V + 
Sbjct: 69  EGITALHNAVCAGHTE-IVKFL------VQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
           ++     V     + + + +        +   + Q  + +       +   N     A
Sbjct: 122 LVESGAAVF---AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK-MGIMNKGVIYA 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 17/123 (13%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDL-----LCKFL----AACPESILQVTIRKETALHVAAK 63
           ++ + +EG T    + + G  D+     LCK      A     I  +    +  +     
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA----DITALYKPYKIVVFKNIF 123

Query: 64  YDRLEVLETMLGWLRYVNMDDI-LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINA 122
              ++  E +  +    +   + L  K+  G T L           ++++   ++   N 
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK-YNL 182

Query: 123 RNS 125
           + +
Sbjct: 183 KEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 16/125 (12%), Positives = 26/125 (20%), Gaps = 23/125 (18%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE--TALHVAAKYDRLEVLETMLG 75
                 +   A  G  +   +      E    V         L       R ++   ++ 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI- 62

Query: 76  WLRYVNMD---DILNWKNDEGNTLLHISISRSHIQIVR-------LIVKRVRDQINARNS 125
                  +   DI   +  EG TL           I          + K     I A   
Sbjct: 63  -------NKGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA--DITALYK 112

Query: 126 KDNTA 130
                
Sbjct: 113 PYKIV 117

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 28/123 (22%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK-----------ETALHVAAKYDRL 67
           EG TPL+      ++++  K L           I +           ++    A    R 
Sbjct: 38  EGNTPLNIAVHNNDIEI-AKAL-----------IDRGADINLQNSISDSPYLYAGAQGRT 85

Query: 68  EVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKD 127
           E+L  ML         D+ N  N  G   L  +  + HI  V+L+++  R+ I+ +N   
Sbjct: 86  EILAYMLK----HATPDL-NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFG 140

Query: 128 NTA 130
            TA
Sbjct: 141 YTA 143

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 57.5 bits (140), Expect = 5e-10
 Identities = 17/116 (14%), Positives = 44/116 (37%), Gaps = 7/116 (6%)

Query: 15  VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML 74
           ++  E    L    ++    +  + L      + +V     T L++A   + +E+ + ++
Sbjct: 1   MKTYEVGALLEAANQRDTKKV-KEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 75  GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
                    DI N +N   ++    + ++   +I+  ++K     +N  N     A
Sbjct: 60  D-----RGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA 109

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 21/117 (17%)

Query: 5   LIDFDRNLVRVQGREGVTPLHYVAEKGNVD---LLCKFLAACPESILQVTIRKETALHVA 61
           ++      +    R G   L   AEKG++D   LL   L    E I        TAL  A
Sbjct: 91  MLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL---LEDGREDIDFQNDFGYTALIEA 147

Query: 62  AKYDR-----LEVLETML--GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
                      ++++ ++  G        D  + K++ G T +  +  + + +I ++
Sbjct: 148 VGLREGNQLYQDIVKLLMENG-------ADQ-SIKDNSGRTAMDYANQKGYTEISKI 196

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
            G +PLH  A+ G+     + L     S    T    T LH+AA      ++E +L    
Sbjct: 33  LGTSPLHLAAQYGHFST-TEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK--- 88

Query: 79  YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
             +  D+ N K+    T LH +   +H ++V L++K   D ++ ++    TA D
Sbjct: 89  --HGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFD 138

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 54.3 bits (132), Expect = 3e-09
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 19/117 (16%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQ-----VTIRKETALHVAAKYDRLEVLETM 73
           +    L   A  G  D   + L      +             + LH+AA+Y      E +
Sbjct: 1   DLGKKLLEAARAGQDDE-VRIL------MANGAPFTTDWLGTSPLHLAAQYGHFSTTEVL 53

Query: 74  LGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
           L            + +     T LH++ S  H  IV +++K   D +NA++    TA
Sbjct: 54  LR-----AGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTA 103

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 51.6 bits (125), Expect = 2e-08
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 19/98 (19%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLETM 73
             TPLH  A +G+ ++  + L      +          + K TALH A +++  EV+E +
Sbjct: 67  DRTPLHMAASEGHANI-VEVL------LKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 74  LGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
           +         D+ + ++    T   ISI   +  +  +
Sbjct: 120 IK-----YGADV-HTQSKFCKTAFDISIDNGNEDLAEI 151

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.8 bits (136), Expect = 4e-10
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 8/113 (7%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWL 77
           ++G TPLH  A+ G+ +   K L +    +   +    T LH+AAK    E+++ +L   
Sbjct: 7   KDGNTPLHNAAKNGHAEE-VKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-- 63

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
                 D+ N ++ +GNT  H++    H +IV+L+  +  D +NAR+   +  
Sbjct: 64  ---KGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD-VNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 42.0 bits (100), Expect = 3e-05
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 19/85 (22%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQ---VTIRKE---TALHVAAKYDRLEVLETM 73
           G TPLH  A+ G+ ++  K L      + +   V  R +   T  H+A K    E+++ +
Sbjct: 42  GNTPLHLAAKNGHAEI-VKLL------LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

Query: 74  LGWLRYVNMDDILNWKNDEGNTLLH 98
                     D+ N ++   +   H
Sbjct: 95  DA-----KGADV-NARSWGSSHHHH 113

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 57.0 bits (139), Expect = 4e-10
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLA---ACPESILQVTIRKETA 57
            +   +    NLV      G TPL + +  G ++   +FL    A P     +   +E+A
Sbjct: 17  QLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIE-TVRFLLEWGADPHI---LAKERESA 72

Query: 58  LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
           L +A+     +++  +L      ++D  +N  +  G T L  ++  +H++ V  ++ R  
Sbjct: 73  LSLASTGGYTDIVGLLLE----RDVD--INIYDWNGGTPLLYAVRGNHVKCVEALLARGA 126

Query: 118 DQINARNSKDNTAMDM 133
           D +        T MD+
Sbjct: 127 D-LTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 11/113 (9%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML--GWL 77
               +H +A +G +D L + L      + +   R  T L  A+ +  +E +  +L  G  
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA- 60

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
                 D  +    E  + L ++ +  +  IV L+++R  D IN  +    T 
Sbjct: 61  ------DP-HILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTP 105

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 51.6 bits (125), Expect = 3e-08
 Identities = 16/128 (12%), Positives = 43/128 (33%), Gaps = 30/128 (23%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK-----------ETALHVA 61
             +  +E  + L   +  G  D+    L           + +            T L  A
Sbjct: 62  PHILAKERESALSLASTGGYTDI-VGLL-----------LERDVDINIYDWNGGTPLLYA 109

Query: 62  AKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQIN 121
            + + ++ +E +L         D+   + D G T + ++++  + ++ ++I   +   + 
Sbjct: 110 VRGNHVKCVEALLA-----RGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHILK-LF 162

Query: 122 ARNSKDNT 129
             N     
Sbjct: 163 QSNLVPAD 170

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 15/115 (13%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML-GWL 77
           EG        + G+            +    V    ET    AA+    + L  +L    
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLED-- 67

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDN-TAM 131
                 D+ +  ++ G T L         + VRL+ +   D ++ R+ +   TA+
Sbjct: 68  -----RDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTAL 115

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 12/114 (10%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFL--AACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
           E  TP    A K +   L   L      ++   V     TAL   A     + +  +   
Sbjct: 44  EYETPWWTAARKADEQAL-SQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAEA 99

Query: 77  LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
              ++  D        G T LH++      ++V  +V+   D I   + +  TA
Sbjct: 100 GADLDHRD-----MRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTA 147

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 27/128 (21%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLA---ACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
           G+T LH  A     ++  + L    A  E       R  TAL +A +  +       + +
Sbjct: 111 GLTALHMAAGYVRPEV-VEALVELGADIEV---EDERGLTALELAREILKTTPKGNPMQF 166

Query: 77  LRYVNMDDI----------------LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQI 120
            R + ++ +                +  K  +G  + ++   +       +    V +  
Sbjct: 167 GRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE-D 225

Query: 121 NARNSKDN 128
            A   KD 
Sbjct: 226 VA---KDY 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 58.2 bits (142), Expect = 5e-10
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 5   LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKY 64
            I    +L     R G T LH  A     D   K L               T LH A   
Sbjct: 42  FIYQGASLHNQTDRTGETALHLAARYSRSDAA-KRLLEASADANIQDNMGRTPLHAAVSA 100

Query: 65  DRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN 124
           D   V + ++      N    L+ +  +G T L ++   +   ++  ++    D +NA +
Sbjct: 101 DAQGVFQILIR-----NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVD 154

Query: 125 SKDNTA 130
               +A
Sbjct: 155 DLGKSA 160

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 56.7 bits (138), Expect = 2e-09
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 15/119 (12%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHVAAKYDRLEVLE 71
           Q   G TPLH         +  + L    A     +        T L +AA+     +LE
Sbjct: 86  QDNMGRTPLHAAVSADAQGV-FQILIRNRAT---DLDARMHDGTTPLILAARLAVEGMLE 141

Query: 72  TMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
            ++      +  D+ N  +D G + LH + + +++    +++K   +  + +N+++ T 
Sbjct: 142 DLIN-----SHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETP 193

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 55.6 bits (135), Expect = 3e-09
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 19/98 (19%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLETM 73
           G + LH+ A   NVD     L      +           R+ET L +AA+    E  + +
Sbjct: 157 GKSALHWAAAVNNVDA-AVVL------LKNGANKDMQNNREETPLFLAAREGSYETAKVL 209

Query: 74  LGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
           L    + N     +  +        I+  R H  IVRL
Sbjct: 210 L--DHFAN----RDITDHMDRLPRDIAQERMHHDIVRL 241

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 27/116 (23%)

Query: 15  VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML 74
           V+G +G TPL   +  G                           +   + D   V+   +
Sbjct: 5   VRGPDGFTPLMIASCSGG---------------------GLETGNSEEEEDAPAVISDFI 43

Query: 75  GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
                     + N  +  G T LH++   S     + +++   D  N +++   T 
Sbjct: 44  Y-----QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTP 93

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 55.9 bits (136), Expect = 5e-10
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 20/119 (16%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLETM 73
           G T LH  + KG++    ++L      +              T LH A  +  L+V+E +
Sbjct: 10  GETLLHIASIKGDIP-SVEYL------LQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62

Query: 74  LGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
           L      +   + N    + ++ LH +    H+ IV+L++       NA N      +D
Sbjct: 63  LQ-----HKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVD 114

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 20  GVTPLHYVAEKGNVDLLCKFL---AACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
           G TPLH     G++ +  + L    A   +      + ++ LH AAK   +++++ +L  
Sbjct: 43  GWTPLHEACNHGHLKV-VELLLQHKALVNT---TGYQNDSPLHDAAKNGHVDIVKLLLS- 97

Query: 77  LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
                     N  N  G   +  +   S   ++ L  K
Sbjct: 98  ----YGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 44.3 bits (106), Expect = 6e-06
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHVAAKYDRLE 68
           V   G +  +PLH  A+ G+VD + K L    A    S   V I     +          
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVD-IVKLLLSYGA----SRNAVNIFGLRPVDYTDDESMKS 123

Query: 69  VLE 71
           +L 
Sbjct: 124 LLL 126

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 58.3 bits (142), Expect = 6e-10
 Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 14/113 (12%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWL 77
            EG TPL    E+   +LL +        + +  +  E A     +    +  +    WL
Sbjct: 137 SEGDTPLDIAEEEAMEELL-QNE------VNRQGVDIEAARKEEERIMLRDARQ----WL 185

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
              +++D        G T LH++ ++ + ++++L+++   D +N ++    T 
Sbjct: 186 NSGHIND--VRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTP 235

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 54.4 bits (132), Expect = 1e-08
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 21/126 (16%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHVAAKYDRLEVLETML 74
           +G+T LH      NVD+  KFL    A    +I Q        LH AA    L++ E ++
Sbjct: 72  DGLTALHQACIDDNVDM-VKFLVENGA----NINQPDNEGWIPLHAAASCGYLDIAEYLI 126

Query: 75  --GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM- 131
             G     +    +   N EG+T L I+   +  ++++  V R    I A   ++   M 
Sbjct: 127 SQG----AH----VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178

Query: 132 -DMVKF 136
            D  ++
Sbjct: 179 RDARQW 184

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 13/114 (11%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML--GW 76
           +           G+   L   +    +   +V          A      E +  +L  G 
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVVKRKK--TKVKFDDGAVFLAACSSGDTEEVLRLLERG- 63

Query: 77  LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
               +    +N+ N +G T LH +    ++ +V+ +V+   + IN  +++    
Sbjct: 64  ---AD----INYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIP 109

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWL 77
           + G T LH  A KG  ++  K L      +        T LH AA + + E    ++   
Sbjct: 197 KSGGTALHVAAAKGYTEV-LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-- 253

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINA-RNSKDN 128
              N+ D+    N  G T   ++       +  L  K+     N   + K  
Sbjct: 254 ---NLCDM-EAVNKVGQTAFDVADEDILGYLEELQKKQ-----NLLHSEKRE 296

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 19/126 (15%), Positives = 39/126 (30%), Gaps = 19/126 (15%)

Query: 16  QGREGVTPLHYVAEKGNVDL-------LCKFLAACPESILQVTIRKETALHVAAKYDRLE 68
             R   T LH++A   + +          K   A    +  +   + T L +A    R  
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 69  VLETML--GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVR-LIVKRVRD-QINARN 124
           ++  ++  G        D     N    + LH + +     ++  ++        I   +
Sbjct: 181 LVAYLMKAG-------ADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232

Query: 125 SKDNTA 130
               TA
Sbjct: 233 RNGMTA 238

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 16/123 (13%)

Query: 18  REGVTPLHYVAEKGNVDLL--CKFL--------AACPESILQVTIRKETALHVAAKYDRL 67
           R G+T L  VA     D +   K L                    +  TALH AA+   +
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM 292

Query: 68  EVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKD 127
            +++ ++G        +  + ++++G T + ++     I++V  ++++    + A ++ D
Sbjct: 293 PIVKYLVGE----KGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATD 346

Query: 128 NTA 130
           +TA
Sbjct: 347 HTA 349

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 20/100 (20%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQV-------TIRKETALHVAAKYDRLEVLE 71
           +G T LHY A+  N+ +  K+L      + +            +T + +AA+  R+EV+ 
Sbjct: 278 KGRTALHYAAQVSNMPI-VKYL------VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 330

Query: 72  TMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
            ++          +    +   +T   ++ + +H  IV +
Sbjct: 331 YLIQ-----QGASV-EAVDATDHTARQLAQANNHHNIVDI 364

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 55.3 bits (134), Expect = 8e-09
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 17/124 (13%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE---TALHVAAKYDRLEVLETMLG 75
              + LH  A   +  ++  ++    +    +        TAL + A  +  + + +   
Sbjct: 198 SERSALHQAAANRDFGMM-VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASA-- 254

Query: 76  WLRY-------VNMDDILNW--KNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSK 126
             +        V+ D       +  +G T LH +   S++ IV+ +V       + ++  
Sbjct: 255 --KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED 312

Query: 127 DNTA 130
             T 
Sbjct: 313 GKTP 316

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 20/122 (16%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML--G 75
              + P       GN  L   F     +   +        LH  A      + E +    
Sbjct: 59  HYSLYPNPQGYGNGNDFLG-DFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRES 116

Query: 76  WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVR-LIVKRVRD------QINARNSKDN 128
               VN+            T+LH   S S  +    LIV   ++       +NA +  +N
Sbjct: 117 ----VNII-----DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN 167

Query: 129 TA 130
           T 
Sbjct: 168 TP 169

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 8/96 (8%), Positives = 16/96 (16%), Gaps = 17/96 (17%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
               L   +  G +               ++                  + +        
Sbjct: 37  SQHSLLEASYDGYIKR----------QRNELQHYSLYPNPQGYGNGNDFLGDFNH----- 81

Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
                I      E    LH   +     I   I + 
Sbjct: 82  -TNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRE 115

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.9 bits (141), Expect = 8e-10
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFL---AACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
           +G T LH      +      FL   +A  E +       +TALH+AA       +E +  
Sbjct: 8   DGDTALHLAVIHQHEP-FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 76  WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
                    +       G+T LH++          +
Sbjct: 67  -----AGAGV-LVAERGGHTALHLACRVRAHTCACV 96

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 55.2 bits (134), Expect = 6e-09
 Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 17/132 (12%)

Query: 15  VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML 74
                   P    ++    +            +        T LHVA  +   E++  + 
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 75  GWLRYVNMDDILNWK-NDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA--- 130
                    D+ N      G T LH+++      ++ L++K   D   AR     T    
Sbjct: 179 D-----AGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGS 231

Query: 131 ------MDMVKF 136
                   + + 
Sbjct: 232 ALLRPNPILARL 243

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 35/129 (27%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK------------ETALHVAAKYDR 66
           +G TPLH      + ++  + L                           T LH+A +   
Sbjct: 157 DGHTPLHVAVIHKDAEM-VRLL-----------RDAGADLNKPEPTCGRTPLHLAVEAQA 204

Query: 67  LEVLETML--GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN 124
             VLE +L  G        D    +   G T L  ++ R +  + RL+            
Sbjct: 205 ASVLELLLKAG-------ADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAP-EPEDG 255

Query: 125 SKDNTAMDM 133
               +    
Sbjct: 256 GDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 16/133 (12%)

Query: 9   DRNLVRVQGREGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHVAAKY 64
               + +Q   G T LH  A  G      + L    A     +L       TALH+A + 
Sbjct: 34  GHEYLDLQNDLGQTALHLAAILGEAS-TVEKLYAAGA----GVLVAERGGHTALHLACRV 88

Query: 65  DRLEVLETMLGWLRYVNMDDI-------LNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
                   +L        D          +   D  +    +    +         +  R
Sbjct: 89  RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR 148

Query: 118 DQINARNSKDNTA 130
            Q+ A N   +T 
Sbjct: 149 LQLEAENYDGHTP 161

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 55  ETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
           +TALH+A  +     L+ +LG       + + + +ND G T LH++        V  +  
Sbjct: 10  DTALHLAVIHQHEPFLDFLLG--FSAGHEYL-DLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 115 RVRDQINARNSKDNTA 130
                +       +TA
Sbjct: 67  AGAG-VLVAERGGHTA 81

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 17/96 (17%), Positives = 24/96 (25%), Gaps = 17/96 (17%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFL---AACPESILQVTIRKETALHVAAKYDRLEVLETML- 74
            G TPLH   E     +L + L    A P +         T L  A       +   +  
Sbjct: 191 CGRTPLHLAVEAQAASVL-ELLLKAGADPTA---RMYGGRTPLGSALLRPNPILARLLRA 246

Query: 75  -GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIV 109
            G                +  +    S S S     
Sbjct: 247 HG-------APE-PEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 9/61 (14%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHVAAKYDRLEVLETM 73
             G TPL     + N  L  + L    A       +    K +    +      +  +  
Sbjct: 223 YGGRTPLGSALLRPNPIL-ARLLRAHGA----PEPEDGGDKLSPCSSSGSDSDSDNRDEG 277

Query: 74  L 74
            
Sbjct: 278 D 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 85  ILNWKNDEGNTLLHISISRSHIQIVRLIVKR--VRDQINARNSKDNTA 130
           +  +  ++G+T LH+++   H   +  ++      + ++ +N    TA
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTA 48

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 57.2 bits (138), Expect = 8e-10
 Identities = 26/162 (16%), Positives = 62/162 (38%), Gaps = 14/162 (8%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
           +   G +PLH  A  G  +++ K L      +  V     T LH AA  +R E+   +L 
Sbjct: 69  KDDAGWSPLHIAASAGXDEIV-KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127

Query: 76  WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVK 135
                +       K+    T +H + ++ ++++V +++       N ++++ NT + +  
Sbjct: 128 GGANPDA------KDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLAC 180

Query: 136 F--HLQTKPEFEELKSMVRKAGGRERSSL----ATMEIADYL 171
               ++         + +      E++ L      + +    
Sbjct: 181 DEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 20/125 (16%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLET 72
           +  T LH+    G+ ++  +FL      +              + LH+AA     E+++ 
Sbjct: 39  DSRTALHWACSAGHTEI-VEFL------LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
           +L           +N  N  G T LH + S++  +I  ++++   +  +A++  D TAM 
Sbjct: 92  LL------VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMH 144

Query: 133 MVKFH 137
                
Sbjct: 145 RAAAK 149

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 54.9 bits (132), Expect = 5e-09
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
            +   +  A  G +D L + + A      +      TALH A      E++E +L     
Sbjct: 7   NIMICNL-AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ---- 61

Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM 131
                + N K+D G + LHI+ S    +IV+ ++ +    +NA N    T +
Sbjct: 62  -LGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPL 110

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 55.0 bits (134), Expect = 8e-10
 Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 12/113 (10%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML--GWL 77
           G TPLH  A  G+++ + K L      +        T LH+AA+   LEV++ +L  G  
Sbjct: 2   GRTPLHLAARNGHLE-VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-- 58

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
                 D+ N K+  G T LH++    H+++V+L+++   D +NA++    T 
Sbjct: 59  -----ADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTP 104

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 48.5 bits (117), Expect = 2e-07
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 29/108 (26%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK-----------ETALHVAAKYDRL 67
            G TPLH  A  G++++  K L           +              T LH+AA+   L
Sbjct: 34  NGRTPLHLAARNGHLEV-VKLL-----------LEAGADVNAKDKNGRTPLHLAARNGHL 81

Query: 68  EVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
           EV++ +L        D  +N K+  G T LH++    H+++V+L+++ 
Sbjct: 82  EVVKLLLE----AGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 9/126 (7%)

Query: 9   DRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLE 68
                R      +  L   A  G +++  +          Q      TALH A       
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEV-VQQAVKEMNDPSQPNEEGITALHNAICGANYS 68

Query: 69  VLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKD- 127
           +++ ++         ++ N  +  G T LH + S +   I   +V+     I A    D 
Sbjct: 69  IVDFLIT-----AGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDG 121

Query: 128 NTAMDM 133
            TA + 
Sbjct: 122 ATAFEK 127

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 12/94 (12%)

Query: 19  EGVTPLHY--VAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
           +G T         +G  D    +LA   +S+  +      AL   +     E+       
Sbjct: 120 DGATAFEKCDPYREGYADCA-TYLADVEQSMGLMNSGAVYALWDYSAEFGDELS------ 172

Query: 77  LRYVNMDDI-LNWKNDEGNTLLHISISRSHIQIV 109
             +   + + +  ++    T    +        V
Sbjct: 173 --FREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 56.3 bits (137), Expect = 9e-10
 Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 15/114 (13%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML-GWL 77
           EG        + G+            +    V    ET    AA+    + L  +L    
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLED-- 66

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDN-TA 130
                 D+ +  ++ G T L         + VRL+ +   D ++ R+ +   TA
Sbjct: 67  -----RDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTA 113

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 20/118 (16%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFL--AACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
           E  TP    A K +       L      ++   V     TAL   A     + +  +   
Sbjct: 43  EYETPWWTAARKADEQA-LSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLA-- 96

Query: 77  LRYVNMD---DILNWKNDE-GNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
                 +   D+ + ++   G T LH++      ++V  +V+   D I   + +  TA
Sbjct: 97  ------EAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTA 146

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 26/103 (25%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFL--------AACPESILQVTIRKETALHVAAKYDRLEVL 70
            G T L +VA  G+     + L                       TALH+AA Y R EV+
Sbjct: 75  NGRTALLFVAGLGSDKC-VRLLAEAGADLDHRDMRG-------GLTALHMAAGYVRPEVV 126

Query: 71  ETML--GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
           E ++  G        DI   +++ G T L ++           
Sbjct: 127 EALVELG-------ADI-EVEDERGLTALELAREILKTTPKGN 161

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
           G+T LH  A     ++  + L      I     R  TAL +A +  +       + + R 
Sbjct: 110 GLTALHMAAGYVRPEV-VEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR 168

Query: 80  VNMDDILN 87
           + ++ ++N
Sbjct: 169 IGLEKVIN 176

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 19/117 (16%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQ---VTIR-KETALHVAAKYDRLEVLETML 74
            G +  +Y     NV L    L      +       +   E  LH AA  +  ++++ +L
Sbjct: 30  HGHSASYYAIADNNVRL-VCTL------LNAGALKNLLENEFPLHQAATLEDTKIVKILL 82

Query: 75  GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKD-NTA 130
                 +  D  +  +D+GNT L+ ++   ++Q V+L VK+    +         T+
Sbjct: 83  F-----SGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTS 132

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 22/122 (18%)

Query: 16  QGREGVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIR----KETALHVAAKYDRLE 68
              +G T L+Y  + GN   V L  K          ++        +T+ + A   + + 
Sbjct: 91  FDDKGNTALYYAVDSGNMQTVKLFVKKNW-------RLMFYGKTGWKTSFYHAVMLNDVS 143

Query: 69  VLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDN 128
           ++   L       +     +      + +HI+I   H+ ++ L++  +    N  NS   
Sbjct: 144 IVSYFLS-----EIPS--TFDLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLF 195

Query: 129 TA 130
             
Sbjct: 196 IP 197

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 12/126 (9%), Positives = 35/126 (27%), Gaps = 22/126 (17%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKET-ALHVAAKYDRLEVLE------- 71
            ++ +H   + G+VD+    L     S            + +A     +E+L+       
Sbjct: 161 LLSCIHITIKNGHVDM-MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI 219

Query: 72  ---TMLGWLRYVNMDDI----------LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRD 118
              +       ++  +I              +   +  +  +     I      ++ +  
Sbjct: 220 NIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279

Query: 119 QINARN 124
               +N
Sbjct: 280 NCVKKN 285

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 20/112 (17%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
           +  +P+H  A +G+V+     L A   +I        T L++A +  +   ++ +L    
Sbjct: 156 DLASPIHEAARRGHVEC-VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 214

Query: 79  YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
            VN       +    ++ LH  +  +  ++  L++    D   A+N++    
Sbjct: 215 DVN-------QGKGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRP 258

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 17/119 (14%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHVAAKYDRLEVLE 71
              + V+PLH     G++    K L    A     +  VT    T L  A      + + 
Sbjct: 88  ITADHVSPLHEACLGGHLSC-VKILLKHGA----QVNGVTADWHTPLFNACVSGSWDCVN 142

Query: 72  TMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
            +L     V           +  + +H +  R H++ V  ++    + I+ + S   T 
Sbjct: 143 LLLQHGASVQ-------PESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTP 193

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 55.2 bits (134), Expect = 6e-09
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 19/116 (16%)

Query: 17  GREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML-- 74
           G +G  P       G   L           ++   +   + +H AA +     L  ++  
Sbjct: 30  GMDGSKPAGPRDFPGIRLLS--------NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ 81

Query: 75  GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
           GW        + N    +  + LH +    H+  V++++K    Q+N   +  +T 
Sbjct: 82  GW-------AV-NIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTP 128

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 55.2 bits (134), Expect = 7e-09
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 12/116 (10%)

Query: 11  NLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVL 70
           N +        +P+H  A  G+   L + L +   ++  +T    + LH A     L  +
Sbjct: 50  NPLMGDAVSDWSPMHEAAIHGHQLSL-RNLISQGWAVNIITADHVSPLHEACLGGHLSCV 108

Query: 71  ETML--GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN 124
           + +L  G         + N    + +T L  +        V L+++     +   +
Sbjct: 109 KILLKHGA-------QV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPES 155

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 28/104 (26%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK----------ETALHVAAKYDRLE 68
              TPL+   E        K L           +            ++ LH   +    E
Sbjct: 189 HLGTPLYLACENQQRAC-VKKL-----------LESGADVNQGKGQDSPLHAVVRTASEE 236

Query: 69  VLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLI 112
           +   ++         D    KN EG   + +    S +  + L 
Sbjct: 237 LACLLMD-----FGADT-QAKNAEGKRPVELVPPESPLAQLFLE 274

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 18/101 (17%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFLAACPESI-----LQVTIRKETALHVAAKYDRLEVL 70
              +  TPL      G+ D     L      +     +Q      + +H AA+   +E +
Sbjct: 121 VTADWHTPLFNACVSGSWDC-VNLL------LQHGASVQPESDLASPIHEAARRGHVECV 173

Query: 71  ETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
            +++ +   ++       K     T L+++        V+ 
Sbjct: 174 NSLIAYGGNIDH------KISHLGTPLYLACENQQRACVKK 208

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVL 70
           QG+   +PLH V    + + L   L              +  + +      L  L
Sbjct: 218 QGKGQDSPLHAVVRTASEE-LACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 20/118 (16%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLET 72
            G T L    + GN ++  + L      +L+              +H AA+   L+ L+T
Sbjct: 37  FGRTALQV-MKLGNPEI-ARRL------LLRGANPDLKDRTGFAVIHDAARAGFLDTLQT 88

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
           +L         D+ N +++EGN  LH++    H+++V  +VK     +  RN K +TA
Sbjct: 89  LLE-----FQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 50.8 bits (123), Expect = 5e-08
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 18/100 (18%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLE 71
           R G   +H  A  G +D   + L      +                LH+AAK   L V+E
Sbjct: 68  RTGFAVIHDAARAGFLDT-LQTL------LEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120

Query: 72  TMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
            ++         ++   +N +G+T   ++      ++V L
Sbjct: 121 FLVK----HTASNV-GHRNHKGDTACDLARLYGRNEVVSL 155

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 47.0 bits (113), Expect = 1e-06
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 55  ETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
              L  AA    LE L ++L      N  ++ N +N  G T L +     + +I R ++ 
Sbjct: 6   GNELASAAARGDLEQLTSLLQ-----NNVNV-NAQNGFGRTALQVM-KLGNPEIARRLLL 58

Query: 115 RVRDQINARNSKDNTA 130
           R  +  + ++      
Sbjct: 59  RGAN-PDLKDRTGFAV 73

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 14/142 (9%)

Query: 2   VLRLIDFDRNLVRVQGREGVTPLHYVAE-----------KGNVDLLCKFLAACPESILQV 50
              L+D+    + ++     T LH++             K  +D+L  ++       +Q 
Sbjct: 183 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 242

Query: 51  TIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVR 110
              ++ +       +R + +   L       + ++LN ++  G+T L+I+    +I IV 
Sbjct: 243 GTNEKESKPNDKNGERKDSILENLDLKW--IIANMLNAQDSNGDTCLNIAARLGNISIVD 300

Query: 111 LIVKRVRDQINARNSKDNTAMD 132
            ++    D     N      +D
Sbjct: 301 ALLDYGAD-PFIANKSGLRPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 49.6 bits (118), Expect = 6e-07
 Identities = 14/128 (10%), Positives = 42/128 (32%), Gaps = 14/128 (10%)

Query: 9   DRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESI-LQVTIRKETALHVAAKYDRL 67
           D +    +G        +V+    +  +         ++ + V     T LH       L
Sbjct: 85  DSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANL 144

Query: 68  EVLETML--GWLRYVNMDDILNWKNDEGNTLLHISISRSH---IQIVRLIVKRVRDQINA 122
           E+++ ++  G        +   + ++ G + L  ++   +         ++  +   +  
Sbjct: 145 ELVKHLVKHG-------SNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196

Query: 123 RNSKDNTA 130
            +S + T 
Sbjct: 197 EDSMNRTI 204

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.8 bits (136), Expect = 1e-09
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
            G +    L   A  G  D   + L A    +        T LH+AA    LE++E +L 
Sbjct: 10  HGSDLGKKLLEAARAGRDDE-VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK 68

Query: 76  WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
                N  D+ N  +  G T L ++    H++IV +++K   D +NA + + +T 
Sbjct: 69  -----NGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTP 116

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 54.3 bits (132), Expect = 4e-09
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 20/118 (16%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLET 72
            G TPLH  A  G++++  + L      +        V     T L +AA +  LE++E 
Sbjct: 46  SGWTPLHLAAFNGHLEI-VEVL------LKNGADVNAVDHAGMTPLRLAALFGHLEIVEV 98

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
           +L      N  D+ N  + EG+T LH++    H++IV +++K   D +NA++    TA
Sbjct: 99  LLK-----NGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTA 149

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 50.1 bits (121), Expect = 1e-07
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 19/102 (18%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLET 72
            G+TPL   A  G++++  + L      +          +   T LH+AA +  LE++E 
Sbjct: 79  AGMTPLRLAALFGHLEI-VEVL------LKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
           +L      N  D+ N ++  G T   ISI   +  +  ++ K
Sbjct: 132 LLK-----NGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 1e-09
 Identities = 51/349 (14%), Positives = 102/349 (29%), Gaps = 110/349 (31%)

Query: 34  DLLCKFLAACPESILQVTIR-KETALHVAAKYDRLEVLETMLGWLRYVNMDDIL-NWKND 91
           +L CK L         +T R K+    ++A       L+     L    +  +L  + + 
Sbjct: 263 NLSCKIL---------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 92  EGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMV 151
               L    +  ++ + + +I + +RD +      DN                ++L +++
Sbjct: 314 RPQDLPR-EVLTTNPRRLSIIAESIRDGLA-TW--DNWK----------HVNCDKLTTII 359

Query: 152 RKAGGRERSSLATMEIADYLKRGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATAT 211
                   SSL  +E A+Y K             +   L +   +          I T  
Sbjct: 360 E-------SSLNVLEPAEYRKM------------FDR-LSVFPPS--------AHIPTIL 391

Query: 212 FQAALTPPQDLWGN--------------RSSDIDSAANVTATSI---------------N 242
                     +W +              + S ++     +  SI                
Sbjct: 392 LSL-------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 243 KNRTVIQEIQLSPLFSLGDYYDQFISGISLFFSLSNILSFSTAMKVISHHL----PYGFA 298
            +R+++    +   F   D    ++                     I HHL         
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH--------------IGHHLKNIEHPERM 490

Query: 299 VTLRLLYMQLDF--SKIRFRRSIWIAEV-LSPVLQHYRSFRNEIKAADP 344
              R++++   F   KIR   + W A   +   LQ  + ++  I   DP
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 57/377 (15%), Positives = 110/377 (29%), Gaps = 97/377 (25%)

Query: 25  HYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDD 84
           H   E G      K        IL V             +D  +V +     L    +D 
Sbjct: 6   HMDFETGEHQYQYK-------DILSVFEDA-----FVDNFDCKDVQDMPKSILSKEEIDH 53

Query: 85  ILNWKNDEGNT-LLHISISRSHIQIVRLIVKRVRDQ-----------------------I 120
           I+  K+    T  L  ++     ++V+  V+ V                          I
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 121 NARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA-----------GGRERSSLATMEIAD 169
             R+   N      K+++     + +L+  + +             G  ++ +A      
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 170 YLKRGLTWRRKVLLFFYRSSLCITDENRNALLVVAVLIATATFQAALTPPQDLWGNRSSD 229
           Y K       K+  F+     C + E         VL         + P      N +S 
Sbjct: 174 Y-KVQCKMDFKI--FWLNLKNCNSPE--------TVLEMLQKLLYQIDP------NWTSR 216

Query: 230 IDSAANVTATSINKNRTVIQEIQLSP-----LFSLGDYYDQFISGISLF----------- 273
            D ++N+    I+  +  ++ +  S      L  L +  +      + F           
Sbjct: 217 SDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILLTTR 273

Query: 274 -FSLSNILSFSTAMKVISHHLPYGF--AVTLRLL--YMQLDFSKIR--------FRRSIW 320
              +++ LS +T   +   H            LL  Y+      +          R SI 
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI- 332

Query: 321 IAEVLSPVLQHYRSFRN 337
           IAE +   L  + ++++
Sbjct: 333 IAESIRDGLATWDNWKH 349

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
               +H +A +G +             I        T L  AA + ++ V+E +L     
Sbjct: 3   NSLSVHQLAAQGEMLY-LATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ---- 57

Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
            N  D          + L ++ S+ +  IV++++    D +N  +    T 
Sbjct: 58  -NGADP-QLLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTP 105

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 54.7 bits (133), Expect = 3e-09
 Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 14/117 (11%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFL---AACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
           EG TPL + A  G +  + +FL    A P+    +   +E+AL +A      ++++ +L 
Sbjct: 35  EGFTPLMWAAAHGQIA-VVEFLLQNGADPQL---LGKGRESALSLACSKGYTDIVKMLLD 90

Query: 76  WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
                 +D  +N  +  G T L  ++  +H++ V+++++   D           +MD
Sbjct: 91  ----CGVD--VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMD 140

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 51.6 bits (125), Expect = 3e-08
 Identities = 15/118 (12%), Positives = 42/118 (35%), Gaps = 15/118 (12%)

Query: 13  VRVQGREGVTPLHYVAEKGNVD---LLCKFLAACPESILQVTIRKETALHVAAKYDRLEV 69
            ++ G+   + L     KG  D   +L          + +      T L  A   + ++ 
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGV----DVNEYDWNGGTPLLYAVHGNHVKC 117

Query: 70  LETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKD 127
           ++ +L      +  D    + D G   + ++++  +  + ++I   +   +     K+
Sbjct: 118 VKMLLE-----SGADP-TIETDSGYNSMDLAVALGYRSVQQVIESHLLK-LLQNI-KE 167

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 8/157 (5%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE--TAL 58
            +  L+  D   V+V   E        AE G++ +    L     + +   I+ E   A 
Sbjct: 110 TLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHV-LNRLCELAPTEIMAMIQAENYHAF 167

Query: 59  HVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVR-LIVKRVR 117
            +AA+   L VL  +           I   + +        ++ R H  ++  L+   V 
Sbjct: 168 RLAAENGHLHVLNRLCELAPTEATAMI---QAENYYAFRWAAVGRGHHNVINFLLDCPVM 224

Query: 118 DQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA 154
                 +  +     +  F  +     +E+    + +
Sbjct: 225 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLS 261

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 17/125 (13%)

Query: 22  TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETM--LGWLRY 79
                    G  DL+ K              +    L    + +   +L+ +  L  +  
Sbjct: 256 DAFKLSNPDGVFDLVTKSECL----------QGFYMLRNLIRRNDEVLLDDIRFLLSIPG 305

Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLI-----VKRVRDQINARNSKDNTAMDMV 134
           +           + N LL +++   +     L+     V  +    N   ++    +D+ 
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLR 365

Query: 135 KFHLQ 139
              L+
Sbjct: 366 AVALE 370

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 56.3 bits (137), Expect = 2e-09
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 16/127 (12%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
                +    + G  +  C+ L      + Q      T LH AA  +R+++++  +    
Sbjct: 8   YSTWDIVKATQYGIYE-RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66

Query: 79  YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA-------- 130
            V+         D  +T LH +  + H+ +V  ++K   D  +  + +  +         
Sbjct: 67  IVDQLG-----GDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFG 120

Query: 131 -MDMVKF 136
              +V +
Sbjct: 121 HTSIVAY 127

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.1 bits (134), Expect = 5e-09
 Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKY-DRLEVLETMLGWL 77
           EG + +H  A+ G+   +  +L A  + +  +     T L  AA     ++    +L + 
Sbjct: 108 EGCSCIHLAAQFGHTS-IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
             VN+ D         NT LH ++   +  ++ L+++   + ++A+N K  +A+D+
Sbjct: 167 VSVNLGD-----KYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 54.7 bits (133), Expect = 6e-09
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 20/114 (17%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLA---ACPESILQVTIRKETALHVAAKYDRLEVLETML-- 74
           G+TPL + A + +     + L                K TALH A       V+  +L  
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNL--GDKYHKNTALHWAVLAGNTTVISLLLEA 199

Query: 75  GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDN 128
           G     N    ++ +N +G + L ++  R ++ ++  +      +       DN
Sbjct: 200 G----AN----VDAQNIKGESALDLAKQRKNVWMINHLQ-----EARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 54.7 bits (133), Expect = 6e-09
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 31/130 (23%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK------------ETALHV 60
           VR   +E VT LH+ A    +DL  K+            I K             T LH 
Sbjct: 35  VRQPDKENVTLLHWAAINNRIDL-VKYY-----------ISKGAIVDQLGGDLNSTPLHW 82

Query: 61  AAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQI 120
           A +   L ++  ++         D  +  + EG + +H++    H  IV  ++ + +D +
Sbjct: 83  ATRQGHLSMVVQLMK-----YGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-V 135

Query: 121 NARNSKDNTA 130
           +  +    T 
Sbjct: 136 DMMDQNGMTP 145

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
              TPLH+   +G++  +   L         +     + +H+AA++    ++  ++    
Sbjct: 75  LNSTPLHWATRQGHLS-MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA--- 130

Query: 79  YVNMDDILNWKNDEGNTLLHISISRSH-IQIVRLIVKRVRDQINARNSKD-NTA 130
               D  ++  +  G T L  +  R+H +   RL++      +N  +    NTA
Sbjct: 131 -KGQD--VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTA 180

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.4 bits (127), Expect = 7e-09
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 12/115 (10%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETML--GWL 77
                 +  + G++D   K   A  E + +        LH AA   +LE+LE +L  G  
Sbjct: 7   CDKEFMWALKNGDLDE-VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG-- 63

Query: 78  RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
                 DI N  +    T L  ++   H+  V+L++ +  D    +     TA +
Sbjct: 64  -----ADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFE 111

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.3 bits (106), Expect = 4e-06
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 29/102 (28%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK-----------ETALHVAAKYDRLE 68
           G  PLHY A+ G +++L +FL           + K            T L  A     + 
Sbjct: 40  GRKPLHYAADCGQLEIL-EFL-----------LLKGADINAPDKHHITPLLSAVYEGHVS 87

Query: 69  VLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVR 110
            ++ +L         D    K  +G T    + +++   +++
Sbjct: 88  CVKLLLS-----KGADK-TVKGPDGLTAFEATDNQAIKALLQ 123

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.8 bits (132), Expect = 8e-09
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 28/138 (20%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFL-------------AACPESILQVTIRKETALHVAAKYD 65
           +G + LH   EK ++    K L                 +         E  L +AA   
Sbjct: 89  QGHSALHIAIEKRSLQC-VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147

Query: 66  RLEVLETMLGWLRY---VNMDD----------ILNWKNDEGNTLLHISISRSHIQIVRLI 112
           + +V+  +L        +   D          ++   N   N+ L I +    +Q+   +
Sbjct: 148 QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 207

Query: 113 VKRVRDQINARNSKDNTA 130
              V+      N +  T 
Sbjct: 208 CPTVQL-EEISNHQGLTP 224

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 27/128 (21%)

Query: 20  GVTPLHYVAEKGNVDLLCKFL------AACPE-------------SILQVTIRKETALHV 60
           G  PL   A     D+   +L       A  E              ++     + +AL +
Sbjct: 136 GELPLSLAACTKQWDV-VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVI 194

Query: 61  AAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQI 120
                 L++   +   ++   +       N +G T L ++     I+I R I++R     
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEI------SNHQGLTPLKLAAKEGKIEIFRHILQR-EFSG 247

Query: 121 NARNSKDN 128
            A +   +
Sbjct: 248 AAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 16/126 (12%)

Query: 22  TPLHYVAEKGN---VDLLCKFLAACPESILQVTIRK----ETALHVAA---KYDRLEVLE 71
             L  V  +G    +  L ++L    + +      +    +T L  A    +      + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 72  TMLGWLRYVNMDDIL-----NWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSK 126
            +L   +       L       +  +G++ LHI+I +  +Q V+L+V+   D ++ R   
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACG 122

Query: 127 DNTAMD 132
                 
Sbjct: 123 RFFQKH 128

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 19/151 (12%), Positives = 45/151 (29%), Gaps = 22/151 (14%)

Query: 2   VLRLIDFDRNLVRVQGREGVTPLHYVAEKGN------VDLLCKFLAACPESILQVTIRKE 55
           +     +  +    +G  G T L              +  L +           V  +  
Sbjct: 25  LRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84

Query: 56  -------TALHVAAKYDRLEVLETMLGWLRYVNMDDILNW-------KNDEGNTLLHISI 101
                  +ALH+A +   L+ ++ ++     V++     +           G   L ++ 
Sbjct: 85  DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA 144

Query: 102 SRSHIQIVRLIVKRVRDQ--INARNSKDNTA 130
                 +V  +++       + A +S  NT 
Sbjct: 145 CTKQWDVVTYLLENPHQPASLEATDSLGNTV 175

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
              + L      G + +    L    +       +  T L +AAK  ++E+   +L   R
Sbjct: 187 PENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ--R 243

Query: 79  YVNMDDILNWKN 90
             +     +  +
Sbjct: 244 EFSGAAAHHHHH 255

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 18/122 (14%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHVAAKYDRLE 68
                R G T L      G+  +    L    A    S         + +H AA+   L+
Sbjct: 29  PDALNRFGKTALQV-MMFGSTAI-ALELLKQGA----SPNVQDTSGTSPVHDAARTGFLD 82

Query: 69  VLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDN 128
            L+ ++      +  D+ N  +  G   +H+++   H  +V  +       ++ R+++  
Sbjct: 83  TLKVLVE-----HGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAES--DLHRRDARGL 134

Query: 129 TA 130
           T 
Sbjct: 135 TP 136

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 17/126 (13%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
               L   A +G+V  + + L         +    +TAL V   +    +   +L     
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLK---- 56

Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA--------- 130
                  N ++  G + +H +     +  ++++V+   D +N  +               
Sbjct: 57  -QGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGH 113

Query: 131 MDMVKF 136
             +V F
Sbjct: 114 TAVVSF 119

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.4 bits (114), Expect = 7e-07
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 16/99 (16%)

Query: 20  GVTPLHYVAEKGNVDLLCKFL----AACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
           G +P+H  A  G +D   K L    A     +          +H+A +     V+   L 
Sbjct: 68  GTSPVHDAARTGFLDT-LKVLVEHGA----DVNVPDGTGALPIHLAVQEGHTAVVS-FL- 120

Query: 76  WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
                   D+ + ++  G T L +++ R    +V ++  
Sbjct: 121 ----AAESDL-HRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 16/93 (17%)

Query: 53  RKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLI 112
           R    L  AA    ++ +  +L       +    +  N  G T L +        I   +
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLH----RELVHP-DALNRFGKTALQVM-MFGSTAIALEL 54

Query: 113 VKRVRDQINARNSKDNTA---------MDMVKF 136
           +K+     N +++   +          +D +K 
Sbjct: 55  LKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKV 86

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLA--ACPESILQVTIRKETALHVAAKYDRLEVLE 71
            G  P+H   ++G+  +   FLA  +          R  T L +A +    ++++
Sbjct: 100 TGALPIHLAVQEGHTAV-VSFLAAESDLHR---RDARGLTPLELALQRGAQDLVD 150

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 25/131 (19%)

Query: 19  EGVTPLHYVAEKGN---VDLL----------CKFLAACPESILQVTIRKETALHVAAKYD 65
            G T LH   E+     V+LL           +     P+         E  L +AA  +
Sbjct: 92  RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151

Query: 66  RLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSH---------IQIVRLIVKRV 116
           +  ++  +          D+   ++  GNT+LH  ++ +           ++  L++ + 
Sbjct: 152 QPHIVHYLTE--NGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208

Query: 117 RDQINARNSKD 127
                  N + 
Sbjct: 209 AKLFPDTNLEA 219

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 19/127 (14%)

Query: 13  VRVQGREGVTPLHYVAEKGNV---DLLCKFL----AACPESILQVTIRKETALHVAA--- 62
           ++V  R     L  +  +G+    + L  FL        +   +     +T L  A    
Sbjct: 1   MKVFNR---PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNL 57

Query: 63  KYDRLEVLETMLGWLRYVN-----MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
              R + +  +L            ++         G T LHI+I R     V L+V++  
Sbjct: 58  SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGA 117

Query: 118 DQINARN 124
           D ++A+ 
Sbjct: 118 D-VHAQA 123

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 14/130 (10%)

Query: 8   FDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE---TALHVAAKY 64
           F           G  PL   A      +   +L         +  +     T LH     
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHI-VHYLTENGHKQADLRRQDSRGNTVLHALVAI 186

Query: 65  ---------DRLEVLETMLGWLRYVNMDDIL-NWKNDEGNTLLHISISRSHIQIVRLIVK 114
                       ++ + +L     +  D  L    N++G + L ++     I I + I++
Sbjct: 187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

Query: 115 RVRDQINARN 124
           R      A +
Sbjct: 247 REIADAAAHH 256

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 24/119 (20%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLETM 73
             TPL      G  +     L      +          I   TAL  A K +RL + E +
Sbjct: 35  NRTPLMVACMLGMENA-IDKL------VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87

Query: 74  L--GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
           L  G        ++ N K+  G T L  SI   + ++   +++   + +N RN +  T 
Sbjct: 88  LSKG-------SNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETP 137

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 23/101 (22%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLET 72
            G TPL +    G  ++   FL      +          +  ET L VA+KY R E+++ 
Sbjct: 100 SGKTPLMWSIIFGYSEM-SYFL------LEHGANVNDRNLEGETPLIVASKYGRSEIVKK 152

Query: 73  ML--GWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
           +L  G        DI + ++  G T    +      +++++
Sbjct: 153 LLELG-------ADI-SARDLTGLTAEASARIFGRQEVIKI 185

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 8/77 (10%), Positives = 26/77 (33%), Gaps = 13/77 (16%)

Query: 54  KETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIV 113
            E    +  +    + L+             + N+++    T L ++        +  +V
Sbjct: 8   GEIVEKIKDEKSINQNLDF------------LRNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 114 KRVRDQINARNSKDNTA 130
           +     +  ++ + +TA
Sbjct: 56  ENFDK-LEDKDIEGSTA 71

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.0 bits (126), Expect = 1e-08
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
            G +    L   A  G  D   + L A    +        T L++A  +  LE++E +L 
Sbjct: 10  HGSDLGKKLLEAARAGQDDE-VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK 68

Query: 76  WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
                N  D+ N  +  G T LH++    H++I  +++K   D +NA++    TA
Sbjct: 69  -----NGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTA 116

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 49.7 bits (120), Expect = 8e-08
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 19/100 (19%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKYDRLEVLE 71
             G+TPL+     G++++  + L      +        V     T LH+AA    LE+ E
Sbjct: 45  EYGLTPLYLATAHGHLEI-VEVL------LKNGADVNAVDAIGFTPLHLAAFIGHLEIAE 97

Query: 72  TMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
            +L      +  D+ N ++  G T   ISI   +  +  +
Sbjct: 98  VLLK-----HGADV-NAQDKFGKTAFDISIGNGNEDLAEI 131

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 16/123 (13%)

Query: 22  TPLHYVAEKGN---VDLLCKFLAACPESILQVTIRK----ETALHVA---AKYDRLEVLE 71
             +     + N   ++ L  FL    + +     +     +T L  A       + + + 
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 72  TMLGWLRYVNM-----DDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSK 126
            +L   R  +      +        +G T LHI+I R ++ +V L+V+   D + A  + 
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANG 133

Query: 127 DNT 129
           D  
Sbjct: 134 DFF 136

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 14/121 (11%)

Query: 8   FDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE---TALHVAAKY 64
           F +   R     G  PL   A    + +  KFL         ++ R     T LH   + 
Sbjct: 136 FKKTKGRPGFYFGELPLSLAACTNQLAI-VKFLLQNSWQPADISARDSVGNTVLHALVEV 194

Query: 65  DRLEVLETMLGWLRYVNMDDI----------LNWKNDEGNTLLHISISRSHIQIVRLIVK 114
               V  T      Y  +  +              N +G T L ++ S   I ++  I++
Sbjct: 195 ADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254

Query: 115 R 115
           R
Sbjct: 255 R 255

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 51.7 bits (124), Expect = 9e-08
 Identities = 30/207 (14%), Positives = 65/207 (31%), Gaps = 39/207 (18%)

Query: 2   VLRLIDFDRNLVRVQGREGVTPLHY---VAEKGNVDLLCKFLAA-----------CPESI 47
           + R      +        G T L         G  D     L                S 
Sbjct: 36  LQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQND-TIALLLDVARKTDSLKQFVNASY 94

Query: 48  LQVTIRKETALHVAAKYDRLEVLETML------------GWLRYVNMDDILNWKNDEGNT 95
                + +TALH+A +   + ++  ++             + +         +    G  
Sbjct: 95  TDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYF----GEL 150

Query: 96  LLHISISRSHIQIVRLIVKRVRDQ--INARNSKDNTAMDMV----KFHLQTKPEFEELKS 149
            L ++   + + IV+ +++       I+AR+S  NT +  +       +        + +
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN 210

Query: 150 MVRKAGGRERSSLATMEIADYLKRGLT 176
            +   G +   +L   EI +  ++GLT
Sbjct: 211 EILILGAKLHPTLKLEEITN--RKGLT 235

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 38/163 (23%)

Query: 1   MVLRLIDFDRNL----------VRVQGREGVTPLHYVAEKGNVD----LL---------C 37
            +  L+D  R                  +G T LH   E+ N+     L+          
Sbjct: 72  TIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA 131

Query: 38  KFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLL 97
                            E  L +AA  ++L +++ +L         DI + ++  GNT+L
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ--NSWQPADI-SARDSVGNTVL 188

Query: 98  HISISRSHIQIVRL------------IVKRVRDQINARNSKDN 128
           H  +  +   +               +  ++   +      + 
Sbjct: 189 HALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR 231

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 28/108 (25%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDL-LCKFLAACPESILQV--------------TIRKETA 57
           +  +   G T LH + E  +  +   KF+ +    IL +                +  T 
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236

Query: 58  LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSH 105
           L +AA   ++ VL  +L              +        H +    H
Sbjct: 237 LALAASSGKIGVLAYILQ-------------REIHEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 5   LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKY 64
            +     L  +  R+G+TPL   A  G + +L          ILQ  I +    H AA +
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVL--------AYILQREIHEPECRHAAAHH 269

Query: 65  D 65
            
Sbjct: 270 H 270

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.1 bits (116), Expect = 9e-08
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY 79
           G TPLH  A  G+++ + K L      +        T LH+AA+   LEV++ +L     
Sbjct: 2   GRTPLHLAARNGHLE-VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---- 56

Query: 80  VNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
               D+ N K+  G T LH++    H+++V+L
Sbjct: 57  -AGADV-NAKDKNGRTPLHLAARNGHLEVVKL 86

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 43.5 bits (104), Expect = 5e-06
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 7/75 (9%)

Query: 56  TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
           T LH+AA+   LEV++ +L         D+ N K+  G T LH++    H+++V+L+++ 
Sbjct: 4   TPLHLAARNGHLEVVKLLLE-----AGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 116 VRDQINARNSKDNTA 130
             D +NA++    T 
Sbjct: 58  GAD-VNAKDKNGRTP 71

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 19  EGVTPLHYVAEKGNVDLL--CKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
                LH   +  N   L    F+      +        TALH AA Y++ + L+     
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL---L 245

Query: 77  LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINAR 123
           L+   +   +   N+ G T L I+  + H +   L+ +         
Sbjct: 246 LKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFP 289

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 13/116 (11%)

Query: 55  ETALHVAAKYDRLEVLETM--LGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLI 112
           E  LH+A K      L  +  +      N   + + K  +GNT LH +   +    ++L+
Sbjct: 191 ELVLHLAVKVANQASLPLVDFIIQ----NGGHL-DAKAADGNTALHYAALYNQPDCLKLL 245

Query: 113 VKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSLATMEIA 168
           +K         N    TA+D+ +     K   +E + ++ +A     +    ++ +
Sbjct: 246 LKGRALV-GTVNEAGETALDIAR-----KKHHKECEELLEQAQAGTFAFPLHVDYS 295

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 13/119 (10%), Positives = 36/119 (30%), Gaps = 10/119 (8%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
           + + G      L   A +G V+   + L         +       + V       +V E 
Sbjct: 5   IHMLGGSSDAGLATAAARGQVE-TVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAEL 62

Query: 73  MLGWLRYVNMDDILNWKNDEGNTL-LHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
           +L      +  +  N  +    T  +H +     +  + ++ +     ++  ++     
Sbjct: 63  LLL-----HGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLP 114

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 41.3 bits (98), Expect = 6e-05
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 15/102 (14%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFL---AACPESILQVTIRKET-ALHVAAKYDRLEVLETM 73
           R G  P+      G+  +  + L    A P           T  +H AA+   L+ L  +
Sbjct: 43  RFGRRPIQV-MMMGSAQV-AELLLLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVL 97

Query: 74  LGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
                      + +  +  G   + ++  + H  I R +   
Sbjct: 98  HR-----AGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.9 bits (115), Expect = 5e-07
 Identities = 13/114 (11%), Positives = 33/114 (28%), Gaps = 10/114 (8%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWL 77
                 L   A +G V+   + L     +           + V        V E +L   
Sbjct: 10  EPSADWLATAAARGRVE-EVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-- 65

Query: 78  RYVNMDDILNWKNDEGNTL-LHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
              +  +  N  +    T  +H +     +  + ++ +     ++ R++     
Sbjct: 66  ---HGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLP 114

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 16/119 (13%)

Query: 18  REGVTPLHYVAEKGNVDLLCKFL---AACPESILQVTIRKET-ALHVAAKYDRLEVLETM 73
             G  P+      G+  +  + L    A P           T  +H AA+   L+ L  +
Sbjct: 43  SYGRRPIQV-MMMGSARV-AELLLLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVL 97

Query: 74  LGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
                      + + ++  G   + ++    H  + R +           N     A +
Sbjct: 98  HR-----AGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNHARIDAAE 149

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 19  EGVTPLHYVAEKGNVDLL--CKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
              T LH      +   L    FL     ++ + T +  TALH     D  E L+ +L  
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK-LL-- 224

Query: 77  LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
           LR     +I    N+ G T L I+    H     L+ +
Sbjct: 225 LRGKASIEIA---NESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 55  ETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
           ETALH+A +      L  +   ++       L+ +  +G+T LH      + + ++L+++
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQN---SGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 115 RVRDQINARNSKDNTAMDM 133
                I   N    T +D+
Sbjct: 227 GKAS-IEIANESGETPLDI 244

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 29/104 (27%)

Query: 20  GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK-----------ETALHVAAKYDRLE 68
               L   A  G  D   + L           +              T LH+AA+   LE
Sbjct: 24  LGKKLLEAARAGQDDE-VRIL-----------MANGADVAAKDKNGSTPLHLAARNGHLE 71

Query: 69  VLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLI 112
           V++ +L         D+   ++  G T   ISI   +  +  ++
Sbjct: 72  VVKLLLE-----AGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 56  TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
             L  AA+  + + +  ++      N  D+   K+  G+T LH++    H+++V+L+++ 
Sbjct: 26  KKLLEAARAGQDDEVRILMA-----NGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEA 79

Query: 116 VRDQINARNSKDNTAMDMVKFH 137
             D + A++    TA D+   +
Sbjct: 80  GAD-VXAQDKFGKTAFDISIDN 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	344
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.93
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.93
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
2rfa_A	232	Transient receptor potential cation channel subfa	99.92
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.92
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.92
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.92
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.92
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.92
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.92
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.91
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.91
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.91
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.91
2rfa_A	232	Transient receptor potential cation channel subfa	99.91
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.91
2etb_A	256	Transient receptor potential cation channel subfam	99.91
2pnn_A	273	Transient receptor potential cation channel subfa	99.91
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.91
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.91
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.91
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.91
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.9
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.9
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.9
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.9
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.9
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.9
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.9
2etb_A	256	Transient receptor potential cation channel subfam	99.9
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.9
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.9
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.89
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.89
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.89
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.89
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.89
2pnn_A	273	Transient receptor potential cation channel subfa	99.88
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.88
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.88
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.88
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.88
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.88
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.87
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.87
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.87
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.87
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.87
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.87
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.86
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.82
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.82
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.81
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.8
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.78
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.77
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.77
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.75
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.72
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.71
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.71
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.7

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=3.4e-30  Score=217.43  Aligned_cols=146  Identities=25%  Similarity=0.389  Sum_probs=132.2

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.||+.+.+ ++.+|.+|+||||+|+..|+.++++.|++. +.+++.+|.+|+||||+|+.+|+.+++++|+++|.+ 
T Consensus        19 ~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-   95 (169)
T 4gpm_A           19 RVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-   95 (169)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             HHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCC-
Confidence            47889998887 899999999999999999999999888876 788999999999999999999999999999996644 


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                           +|.+|.+|+||||+|+..|+.+++++|+++| ++++.+|.+|+|||++|+     ..++.+++++|+++||++..
T Consensus        96 -----vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~-----~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A           96 -----VNAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAR-----EHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             -----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHTC------
T ss_pred             -----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHH-----HcCCHHHHHHHHHCCCCcCC
Confidence                 7889999999999999999999999999999 999999999999999999     88999999999999999764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=1.3e-26  Score=196.26  Aligned_cols=147  Identities=21%  Similarity=0.269  Sum_probs=136.8

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.||+.++..++.+|..|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|+++|.  
T Consensus        20 ~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--   96 (179)
T 3f6q_A           20 AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA--   96 (179)
T ss_dssp             HHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC--
T ss_pred             HHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--
Confidence            367899988888999999999999999999999999888876 78889999999999999999999999999999654  


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                          .++.+|.+|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+     ..++.+++++|++.|++++.
T Consensus        97 ----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~-----~~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A           97 ----DINAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAK-----APLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             ----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSC-----HHHHHHHHHHHHHTTCCCSC
T ss_pred             ----CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHH-----HHHHHHHHHHHHHhhcCccc
Confidence                47789999999999999999999999999999 999999999999999999     88899999999999999986

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=1.6e-26  Score=194.15  Aligned_cols=147  Identities=16%  Similarity=0.209  Sum_probs=136.2

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +++.||+.++..++.+|..|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|++++.  
T Consensus        17 ~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--   93 (172)
T 3v30_A           17 QLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGGYTDIVGLLLERDV--   93 (172)
T ss_dssp             HHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC--
T ss_pred             HHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCC--
Confidence            368899999988999999999999999999999999999987 67889999999999999999999999999999654  


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                          .++.+|..|+||||+|+..|+.+++++|++++ ++++.+|..|.||+|+|+     ..++.+++++|+++|++...
T Consensus        94 ----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~-----~~~~~~~~~~L~~~~~~~~~  163 (172)
T 3v30_A           94 ----DINIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAV-----ALGYRKVQQVIENHILKLFQ  163 (172)
T ss_dssp             ----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHHHHHHSC
T ss_pred             ----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHH-----HhCcHHHHHHHHHHHHHHhc
Confidence                47789999999999999999999999999999 999999999999999999     88899999999999887665

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=2.1e-26  Score=191.24  Aligned_cols=142  Identities=25%  Similarity=0.351  Sum_probs=128.7

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +++.|++.+.+ ++.+|..|+||||+|+. |+.++++.|++. +.+++.+|..|+||||+|+..|+.+++++|++++.  
T Consensus        20 ~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--   94 (162)
T 1ihb_A           20 QLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA--   94 (162)
T ss_dssp             HHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--
T ss_pred             HHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--
Confidence            36788887766 78999999999999999 999999988886 77889999999999999999999999999999654  


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcc-cccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQ-INARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGR  157 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~-~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~  157 (344)
                          .++.+|.+|+||||+|+..|+.+++++|++++ ++ ++.+|..|.||+|+|+     ..++.+++++|+++||+
T Consensus        95 ----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~t~l~~A~-----~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           95 ----DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT-ASNVGHRNHKGDTACDLAR-----LYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             ----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTC--
T ss_pred             ----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc-CCCCCCcCCCCCcHHHHHH-----HcCCHHHHHHHHHhCCC
Confidence                47789999999999999999999999999999 55 7999999999999999     88999999999999985

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=8.7e-27  Score=188.67  Aligned_cols=133  Identities=12%  Similarity=0.138  Sum_probs=124.3

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccC
Q 043149           11 NLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKN   90 (344)
Q Consensus        11 ~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d   90 (344)
                      ..++.+|.+|.||||+|+..|+.++++.|++. +.+++.+|..|+||||+|+. |+.+++++|++++.+      ++.+|
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~------~~~~~   74 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE------PNCAD   74 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC------SSCCB
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC------CCCcC
Confidence            34788999999999999999999999999987 77889999999999999999 999999999996544      77899


Q ss_pred             CC-CCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCC
Q 043149           91 DE-GNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGR  157 (344)
Q Consensus        91 ~~-G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~  157 (344)
                      .. |+||||+|+..|+.+++++|++++ ++++.+|..|+||+|+|+     ..++.+++++|+++|++
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~-----~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           75 PATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAE-----EQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TTTTBCHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHH-----HHTCHHHHHHHHHHHCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCC
Confidence            99 999999999999999999999999 999999999999999999     88899999999999985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=4.8e-26  Score=191.09  Aligned_cols=141  Identities=27%  Similarity=0.369  Sum_probs=114.9

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.|++.+.+ ++.+|.+|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|++++.+ 
T Consensus        29 ~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-  105 (169)
T 2y1l_E           29 EVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-  105 (169)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             HHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            36677777665 777888888888888888888888877775 667778888888888888888888888888885543 


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG  155 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~g  155 (344)
                           ++.+|.+|+||||+|+..|+.+++++|++++ ++++.+|..|.||+++|+     ..++.+++++|++.|
T Consensus       106 -----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~-----~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          106 -----VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISI-----DNGNEDLAEILQKLN  169 (169)
T ss_dssp             -----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHTC-
T ss_pred             -----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH-----HhCCHHHHHHHHHcC
Confidence                 6677888888888888888888888888888 888888888888888888     777888888888765

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=5.1e-26  Score=189.80  Aligned_cols=141  Identities=21%  Similarity=0.266  Sum_probs=98.7

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      ++.|++.++..++..+..|.||||+|+..|+.++++.|++. +.+++.+|..|+||||+|+..|+.+++++|++++.   
T Consensus        24 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---   99 (165)
T 3twr_A           24 VKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA---   99 (165)
T ss_dssp             HHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---
T ss_pred             HHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCC---
Confidence            45666666666666777777777777777777777666665 56667777777777777777777777777777543   


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGG  156 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga  156 (344)
                         .++.+|..|+||||+|+..|+.+++++|++++ ++++.+|..|+||+|+|.     . ++.+++++|++.|+
T Consensus       100 ---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~-----~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          100 ---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVK-----D-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             ---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSC-----T-TCHHHHHHHHTC--
T ss_pred             ---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHh-----c-CChHHHHHHhhccc
Confidence               35566777777777777777777777777777 777777777777777765     4 55677777777664

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=7.6e-26  Score=189.09  Aligned_cols=144  Identities=15%  Similarity=0.225  Sum_probs=110.4

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      ++.|++.+.+ ++.+|.+|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|++++.+  
T Consensus        19 v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--   94 (167)
T 3v31_A           19 LATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD--   94 (167)
T ss_dssp             HHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC--
T ss_pred             HHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--
Confidence            5667776654 777788888888888888888888777765 666777777888888888888888888888875433  


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRER  159 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~  159 (344)
                          ++.+|.+|+||||+|+..|+.+++++|++++ ++++.+|..|.||+++|+     ..++.+++++|++++++..
T Consensus        95 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~-----~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A           95 ----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAV-----ALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHHHHHHC
T ss_pred             ----CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH-----HcCcHHHHHHHHHHHHHHH
Confidence                5667778888888888888888888888877 788888888888888888     7777888888877755543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.93  E-value=6.7e-26  Score=205.13  Aligned_cols=146  Identities=24%  Similarity=0.277  Sum_probs=130.8

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      ++.|++.+.+ ++.+|.+|+||||+||..|+.++++.|+.. +.+++..+.+|.||+|+|+..++.+++++|++.|.   
T Consensus        69 v~~Ll~~Gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~---  143 (269)
T 4b93_B           69 LAKVPASGLG-VNVTSQDGSSPLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNA---  143 (269)
T ss_dssp             ------CCCC-TTCCCTTSCCHHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC---
T ss_pred             HHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCcCccCCCCCCccccccccChHHHHHHHHHCCC---
Confidence            4567776666 899999999999999999999999888876 77888999999999999999999999999999654   


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                         .+|.+|.+|+||||+|+..|+.+++++|+++| +++|.+|..|.||||+|+     ..++.+++++|+++|++++..
T Consensus       144 ---~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~-----~~g~~~~v~~Ll~~Gad~~~~  214 (269)
T 4b93_B          144 ---KPNKKDLSGNTPLIYACSGGHHELVALLLQHG-ASINASNNKGNTALHEAV-----IEKHVFVVELLLLHGASVQVL  214 (269)
T ss_dssp             ---CSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTT-CCTTCBCTTSCBHHHHHH-----HTTCHHHHHHHHHTTCCSCCC
T ss_pred             ---CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCccccCCCcHHHHHH-----HcCCHHHHHHHHHCCCCCCCc
Confidence               47789999999999999999999999999999 999999999999999999     889999999999999998873

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=1.6e-25  Score=202.02  Aligned_cols=153  Identities=22%  Similarity=0.263  Sum_probs=119.2

Q ss_pred             CHHHHHhcCCc--cccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchh
Q 043149            1 MVLRLIDFDRN--LVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR   78 (344)
Q Consensus         1 ~v~~LL~~~~~--~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~   78 (344)
                      +|+.||+.+.+  .++.+|..|.||||+|+..|+.++++.|++. +..++.+|..|+||||+|+..|+.+++++|++++.
T Consensus        24 ~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  102 (282)
T 1oy3_D           24 FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP  102 (282)
T ss_dssp             HHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCC
T ss_pred             HHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCC
Confidence            36777876554  4778888899999999999999999888875 67788888888889988888888888888887654


Q ss_pred             ccC-----------------------------------------ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccC
Q 043149           79 YVN-----------------------------------------MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR  117 (344)
Q Consensus        79 ~~~-----------------------------------------~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~  117 (344)
                      +..                                         ....++.+|..|+||||+|+..|+.+++++|++++ 
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-  181 (282)
T 1oy3_D          103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG-  181 (282)
T ss_dssp             SSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-
T ss_pred             CCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC-
Confidence            311                                         12347777888888888888888888888888877 


Q ss_pred             cccccccCC-CCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          118 DQINARNSK-DNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       118 ~~~~~~n~~-G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      ++++.++.. |+||||+|+     ..++.+++++|+++|++++.
T Consensus       182 ~~~~~~~~~~g~tpL~~A~-----~~~~~~~v~~Ll~~gad~~~  220 (282)
T 1oy3_D          182 ADLNKPEPTCGRTPLHLAV-----EAQAASVLELLLKAGADPTA  220 (282)
T ss_dssp             CCTTCCCTTTCCCHHHHHH-----HTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCCCCCcCHHHHHH-----HcCCHHHHHHHHHcCCCCcc
Confidence            777777754 888888888     67777888888888877766

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=1.7e-25  Score=191.44  Aligned_cols=139  Identities=22%  Similarity=0.174  Sum_probs=126.0

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccC
Q 043149           11 NLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKN   90 (344)
Q Consensus        11 ~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d   90 (344)
                      .+++.+|..|+||||+|+..|+.++++.|++. +..++..|..|+||||+|+..|+.+++++|++++.+      ++.+|
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~   98 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN------VNTKD   98 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC------TTCCC
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCC------CCCCC
Confidence            45678899999999999999999999999987 667888899999999999999999999999996543      67789


Q ss_pred             CCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCCC
Q 043149           91 DEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSL  162 (344)
Q Consensus        91 ~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~~  162 (344)
                      ..|+||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+     ..++.+++++|+++|++++...
T Consensus        99 ~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~~~  164 (192)
T 2rfm_A           99 FSGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVAS-----KYGRSEIVKKLLELGADISARD  164 (192)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCBC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHHCCCCCCCcC
Confidence            99999999999999999999999998 999999999999999999     8889999999999999987643

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=1.9e-25  Score=199.64  Aligned_cols=148  Identities=18%  Similarity=0.174  Sum_probs=93.2

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +++.|++.+++..+..|.+|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|++.+.. 
T Consensus        38 ~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-  115 (253)
T 1yyh_A           38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT-  115 (253)
T ss_dssp             --------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTS-
T ss_pred             HHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            467778888776666788888888888888888888777775 677778888888888888888888888888876531 


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                          .++..|.+|.||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+     ..++.+++++|+++|++++.
T Consensus       116 ----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~  185 (253)
T 1yyh_A          116 ----DLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAA-----AVNNVDAAVVLLKNGANKDM  185 (253)
T ss_dssp             ----CTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT-CCTTCBCTTSCBHHHHHH-----HHTCHHHHHHHHHTTCCTTC
T ss_pred             ----CccccCCCCCcHHHHHHHcChHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCC
Confidence                24455556666666666666666666666655 566666666666666666     55555666666666655544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.93  E-value=7.3e-25  Score=188.24  Aligned_cols=153  Identities=19%  Similarity=0.225  Sum_probs=137.3

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      |+.||+.++..++..|.+|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|++.+    
T Consensus        21 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~----   95 (201)
T 3hra_A           21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAGAQGRTEILAYMLKHA----   95 (201)
T ss_dssp             HHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS----
T ss_pred             HHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc----
Confidence            67889888867999999999999999999999999988886 7888999999999999999999999999999642    


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                       ...++..|..|+||||+|+..|+.+++++|+++++++++.+|..|+||||+|+....+..++.+++++|+++|++++.
T Consensus        96 -~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~  173 (201)
T 3hra_A           96 -TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI  173 (201)
T ss_dssp             -CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred             -CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence             345788999999999999999999999999999888999999999999999994433344459999999999999886

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.93  E-value=7.2e-25  Score=191.35  Aligned_cols=147  Identities=18%  Similarity=0.176  Sum_probs=82.2

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      ++.|++.+.+..+..|.+|.||||+|+..|+.++++.|++. +..++..|..|+||||+|+..|+.+++++|++.+.   
T Consensus         7 i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~---   82 (223)
T 2f8y_A            7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA---   82 (223)
T ss_dssp             EETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT---
T ss_pred             HHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC---
Confidence            44556666654444566666666666666666666666654 45556666666666666666666666666666432   


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                        ..++..|.+|.||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+     ..++.+++++|+++|++++.
T Consensus        83 --~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~  153 (223)
T 2f8y_A           83 --TDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAA-----AVNNVDAAVVLLKNGANKDM  153 (223)
T ss_dssp             --SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHH-----HTTCHHHHHHHHHTTCCTTC
T ss_pred             --CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcC-CCCcCcCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCC
Confidence              123444455555555555555555555555554 455555555555555555     44445555555555554443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.93  E-value=9.1e-25  Score=199.18  Aligned_cols=153  Identities=19%  Similarity=0.216  Sum_probs=135.6

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.||+.+.+ ++..|.+|.||||+||..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|+++|.++
T Consensus        55 ~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  132 (299)
T 1s70_B           55 EVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV  132 (299)
T ss_dssp             HHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            36788988877 889999999999999999999999988885 7889999999999999999999999999999987764


Q ss_pred             Cccc------------------------------------------------------cccccCCCCCcHHHHHHHCCcH
Q 043149           81 NMDD------------------------------------------------------ILNWKNDEGNTLLHISISRSHI  106 (344)
Q Consensus        81 ~~~~------------------------------------------------------~ln~~d~~G~TpLH~Aa~~g~~  106 (344)
                      +...                                                      .....+..|.||||+|+..|+.
T Consensus       133 ~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~  212 (299)
T 1s70_B          133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT  212 (299)
T ss_dssp             TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcH
Confidence            3110                                                      0112456799999999999999


Q ss_pred             HHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149          107 QIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus       107 ~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      +++++|+++| ++++.+|..|.||||+|+     ..++.+++++|+++|++++..
T Consensus       213 ~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~-----~~~~~~~v~~Ll~~gad~~~~  261 (299)
T 1s70_B          213 EVLKLLIQAR-YDVNIKDYDGWTPLHAAA-----HWGKEEACRILVENLCDMEAV  261 (299)
T ss_dssp             HHHHHHHTTT-CCTTCCCTTCCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHHcC-CCCCCcCCCCCcHHHHHH-----hcCCHHHHHHHHHcCCCCCCc
Confidence            9999999999 999999999999999999     889999999999999998763

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=1.8e-25  Score=197.26  Aligned_cols=153  Identities=22%  Similarity=0.262  Sum_probs=129.3

Q ss_pred             HHHHHhcCCc---cccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchh
Q 043149            2 VLRLIDFDRN---LVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR   78 (344)
Q Consensus         2 v~~LL~~~~~---~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~   78 (344)
                      ++.|++....   .++.+|..|.||||+|+..|+.++++.|++. +..++.+|..|+||||+|+..|+.+++++|++.+.
T Consensus        24 v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  102 (236)
T 1ikn_D           24 TMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT  102 (236)
T ss_dssp             SSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             HHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence            4556665543   5788899999999999999999999877765 77888889999999999999999999999999887


Q ss_pred             ccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccC-CCCCHHHHHhhhcCCCccHHHHHHHHHHcCCC
Q 043149           79 YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNS-KDNTAMDMVKFHLQTKPEFEELKSMVRKAGGR  157 (344)
Q Consensus        79 ~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~-~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~  157 (344)
                      ++.....++..|..|+||||+|+..|+.+++++|+++| ++++.+|. .|.||||+|+     ..++.+++++|+++|++
T Consensus       103 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~-----~~~~~~~v~~Ll~~ga~  176 (236)
T 1ikn_D          103 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAV-----DLQNPDLVSLLLKCGAD  176 (236)
T ss_dssp             TTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHH-----HTTCHHHHHHHHTTTCC
T ss_pred             chhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCC
Confidence            65556667888899999999999999999999999998 89999987 8999999999     78889999999999998


Q ss_pred             CCCC
Q 043149          158 ERSS  161 (344)
Q Consensus       158 ~~~~  161 (344)
                      ++..
T Consensus       177 ~~~~  180 (236)
T 1ikn_D          177 VNRV  180 (236)
T ss_dssp             SCCC
T ss_pred             CCcc
Confidence            8763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=5.1e-25  Score=181.59  Aligned_cols=135  Identities=24%  Similarity=0.247  Sum_probs=115.0

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      |+.|++.+.+. + .|..|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|+++|.   
T Consensus        18 v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---   91 (153)
T 1awc_B           18 VRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA---   91 (153)
T ss_dssp             HHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC---
T ss_pred             HHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCC---
Confidence            67788877753 3 588899999999999999999888865 67788888899999999999999999999998654   


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHH
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMV  151 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L  151 (344)
                         .++.+|.+|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+     ..++.+++++|
T Consensus        92 ---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~-----~~~~~~i~~~L  152 (153)
T 1awc_B           92 ---DVNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISI-----DNGNEDLAEIL  152 (153)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHH
T ss_pred             ---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHH-----HcCCHHHHHHh
Confidence               36778889999999999999999999999998 899999999999999998     77888888876

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=1.4e-25  Score=197.94  Aligned_cols=148  Identities=16%  Similarity=0.236  Sum_probs=133.2

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC-----CCcccccCCCChHHHHHHHcCCHHHHHHHHh
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACP-----ESILQVTIRKETALHVAAKYDRLEVLETMLG   75 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~-----~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~   75 (344)
                      +|+.||+.+.+ ++.+|..|.||||+|+..|+.++++.|+..+.     ...+..|..|+||||+|+.+|+.+++++|++
T Consensus        60 ~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  138 (236)
T 1ikn_D           60 IAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS  138 (236)
T ss_dssp             HHHCCCSCCCC-SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            36677777766 88999999999999999999999999998753     2367788999999999999999999999999


Q ss_pred             chhccCccccccccCC-CCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149           76 WLRYVNMDDILNWKND-EGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus        76 ~~~~~~~~~~ln~~d~-~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                      +|.+      ++.+|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+||+++|+     ..++.+++++|+++
T Consensus       139 ~g~~------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~-----~~~~~~~~~~Ll~~  206 (236)
T 1ikn_D          139 LGAD------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTW-----GRPSTRIQQQLGQL  206 (236)
T ss_dssp             HTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCT-----TSSCHHHHHHHHTT
T ss_pred             cCCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHH-----ccCchHHHHHHHHc
Confidence            7654      677887 9999999999999999999999999 999999999999999999     88999999999999


Q ss_pred             CCCCCCC
Q 043149          155 GGRERSS  161 (344)
Q Consensus       155 ga~~~~~  161 (344)
                      |++....
T Consensus       207 ga~~~~~  213 (236)
T 1ikn_D          207 TLENLQM  213 (236)
T ss_dssp             SCGGGSS
T ss_pred             chhhhhc
Confidence            9987753

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.92  E-value=9.3e-25  Score=191.95  Aligned_cols=153  Identities=21%  Similarity=0.268  Sum_probs=130.8

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCc----ccccCCCChHHHHHHHcCCHHHHHHHHhc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESI----LQVTIRKETALHVAAKYDRLEVLETMLGW   76 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~----~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~   76 (344)
                      +|+.||+..+..++.+|.+|+||||+|+..|+.++++.|++.++...    +..|..|+||||+|+..|+.+++++|+++
T Consensus        18 ~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   97 (232)
T 2rfa_A           18 ALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR   97 (232)
T ss_dssp             HHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhC
Confidence            36788888566699999999999999999999999999998854322    56678999999999999999999999998


Q ss_pred             hhccCccc-------cccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHH-
Q 043149           77 LRYVNMDD-------ILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELK-  148 (344)
Q Consensus        77 ~~~~~~~~-------~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~-  148 (344)
                      |.+.+...       ..+..|.+|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+     ..++.+++ 
T Consensus        98 g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~-----~~~~~~~~~  171 (232)
T 2rfa_A           98 GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDSLGNTVLHILI-----LQPNKTFAC  171 (232)
T ss_dssp             TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----TCSCHHHHH
T ss_pred             CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH-----HcCChHHHH
Confidence            76643211       12334568999999999999999999999999 999999999999999999     77777776 


Q ss_pred             ---HHHHHcCCCCC
Q 043149          149 ---SMVRKAGGRER  159 (344)
Q Consensus       149 ---~~L~~~ga~~~  159 (344)
                         ++|+++|++..
T Consensus       172 ~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          172 QMYNLLLSYDGGDH  185 (232)
T ss_dssp             HHHHHHHHTTCSCS
T ss_pred             HHHHHHHhcCCchh
Confidence               99999999875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.92  E-value=5.6e-25  Score=188.95  Aligned_cols=143  Identities=20%  Similarity=0.306  Sum_probs=132.9

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.|++.+.+ ++.+|..|.||||+|+..|+.++++.|++..+..++..|..|.||||+|+..|+.+++++|++++.  
T Consensus        54 ~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--  130 (201)
T 3hra_A           54 IAKALIDRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR--  130 (201)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC--
T ss_pred             HHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC--
Confidence            46788888776 889999999999999999999999999988888999999999999999999999999999999652  


Q ss_pred             CccccccccCCCCCcHHHHHHHCCc-----HHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSH-----IQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG  155 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~-----~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~g  155 (344)
                         ..++.+|..|+||||+|+..++     .+++++|+++| ++++.+|..|+||+|+|+     ..++.+++++|+++|
T Consensus       131 ---~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~-----~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          131 ---EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQSIKDNSGRTAMDYAN-----QKGYTEISKILAQYN  201 (201)
T ss_dssp             ---CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHTCC
T ss_pred             ---CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCC-CCCCccCCCCCCHHHHHH-----HcCCHhHHHHHHhcC
Confidence               3478899999999999999998     99999999999 999999999999999999     889999999999886

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.92  E-value=9.4e-25  Score=191.63  Aligned_cols=147  Identities=18%  Similarity=0.185  Sum_probs=114.0

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      ++.+++.++...+.+|.+|.||||+|+..|+.++++.|++. +..++..|..|+||||+|+..|+.+++++|++++.+  
T Consensus        22 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--   98 (231)
T 3aji_A           22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH--   98 (231)
T ss_dssp             HHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--
T ss_pred             HHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC--
Confidence            56788888877888888888888888888888888888776 667788888888888888888888888888886543  


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                          ++.+|..|.||||+|+..|+.+++++|++++ ++++.+|..|.||+|+|+     ..++.+++++|+++|++++..
T Consensus        99 ----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~  168 (231)
T 3aji_A           99 ----VNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDATAMHRAA-----AKGNLKMVHILLFYKASTNIQ  168 (231)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHTTCCSCCC
T ss_pred             ----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHH-----HcCCHHHHHHHHhcCCCcccc
Confidence                5556777777777777777777777777776 777777777777777777     666777777777777766653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.92  E-value=9.9e-25  Score=190.47  Aligned_cols=149  Identities=15%  Similarity=0.181  Sum_probs=137.3

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.|++.+.+ ++.+|..|.||||+|+..|+.++++.|++..+..++..+..|+||||+|+..|+.+++++|++++.  
T Consensus        40 ~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--  116 (223)
T 2f8y_A           40 AAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA--  116 (223)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--
T ss_pred             HHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCC--
Confidence            46788888776 889999999999999999999999999998777889999999999999999999999999999654  


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                          .++.+|.+|+||||+|+..|+.+++++|++++ ++++.+|..|.||+|+|+     ..++.+++++|+++|++++.
T Consensus       117 ----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~  186 (223)
T 2f8y_A          117 ----DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAA-----REGSYETAKVLLDHFANRDI  186 (223)
T ss_dssp             ----CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHH-----HHTCHHHHHHHHHTTCCTTC
T ss_pred             ----CCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCcCHHHHHH-----HcCCHHHHHHHHHcCCCCcc
Confidence                36778999999999999999999999999998 999999999999999999     88899999999999999876


Q ss_pred             CC
Q 043149          161 SL  162 (344)
Q Consensus       161 ~~  162 (344)
                      ..
T Consensus       187 ~~  188 (223)
T 2f8y_A          187 TD  188 (223)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.92  E-value=1.2e-24  Score=201.90  Aligned_cols=152  Identities=22%  Similarity=0.264  Sum_probs=120.4

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.|++.+.+ ++.+|.+|.||||+|+..|+.++++.|++. +..++..|..|+||||+|+..|+.+++++|+++|.++
T Consensus        73 ~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  150 (351)
T 3utm_A           73 IVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP  150 (351)
T ss_dssp             HHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCC-CCccCCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            36777777666 788888888888888888888888877776 6777888888888888888888888888888876543


Q ss_pred             C-------------------------------------------------------------------------------
Q 043149           81 N-------------------------------------------------------------------------------   81 (344)
Q Consensus        81 ~-------------------------------------------------------------------------------   81 (344)
                      .                                                                               
T Consensus       151 ~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~  230 (351)
T 3utm_A          151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA  230 (351)
T ss_dssp             TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHH
T ss_pred             ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHH
Confidence            2                                                                               


Q ss_pred             -----ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCC
Q 043149           82 -----MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGG  156 (344)
Q Consensus        82 -----~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga  156 (344)
                           .+..++.+|.+|+||||+|+..|+.+++++|+++| +++|.+|..|+||||+|+     ..++.+++++|+++|+
T Consensus       231 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga  304 (351)
T 3utm_A          231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAA-----LAGHLQTCRLLLSYGS  304 (351)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHTTC
T ss_pred             HHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHH-----HcCcHHHHHHHHHcCC
Confidence                 12235667778888888888888888888888887 888888888888888888     7777888888888888


Q ss_pred             CCCC
Q 043149          157 RERS  160 (344)
Q Consensus       157 ~~~~  160 (344)
                      +++.
T Consensus       305 d~~~  308 (351)
T 3utm_A          305 DPSI  308 (351)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            7766

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=1.6e-24  Score=171.53  Aligned_cols=126  Identities=26%  Similarity=0.435  Sum_probs=118.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHH
Q 043149           19 EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLH   98 (344)
Q Consensus        19 ~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH   98 (344)
                      +|.||||.|+..|+.++++.|++. +..++..|..|.||||+|+..++.+++++|++++.      .++.+|..|+||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~l~   73 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA------DVNAKDKNGRTPLH   73 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC------CCcccCCCCCcHHH
Confidence            599999999999999999999987 67788899999999999999999999999999654      36778999999999


Q ss_pred             HHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCC
Q 043149           99 ISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGR  157 (344)
Q Consensus        99 ~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~  157 (344)
                      +|+..|+.+++++|++++ ++++.+|..|.||+++|+     ..++.+++++|+++|++
T Consensus        74 ~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~-----~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           74 LAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHTCC
T ss_pred             HHHHcChHHHHHHHHHcC-CCCcccCCCCCCHHHHHH-----HcCcHHHHHHHHHcCCC
Confidence            999999999999999999 999999999999999999     88899999999999985

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=8e-25  Score=180.65  Aligned_cols=138  Identities=17%  Similarity=0.245  Sum_probs=123.1

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      ++.||+..+..++..|..|.||||+ |..|+.++++.|++. +.+++.+|..|+||||+|+..|+.+++++|+++|.+  
T Consensus        18 v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--   93 (156)
T 1bd8_A           18 VRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD--   93 (156)
T ss_dssp             HHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--
T ss_pred             HHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC--
Confidence            6778887555688899999999999 999999999888876 778889999999999999999999999999996543  


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                          ++.+|.+|+||||+|+..|+.+++++|++.  ++++.+|.+|.||+|+|+     ..++.+++++|+++
T Consensus        94 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~-----~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           94 ----VNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELAL-----QRGAQDLVDILQGH  155 (156)
T ss_dssp             ----SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHH-----HSCCHHHHHHHHTT
T ss_pred             ----CCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHH-----HcCcHHHHHHHHhh
Confidence                677899999999999999999999999988  789999999999999999     88899999998864

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.92  E-value=1.1e-24  Score=196.36  Aligned_cols=97  Identities=18%  Similarity=0.111  Sum_probs=52.2

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC--CcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCC
Q 043149           14 RVQGREGVTPLHYVAEKGNVDLLCKFLAACPE--SILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKND   91 (344)
Q Consensus        14 ~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~--~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~   91 (344)
                      +.+|.+|+||||+||..|+.++++.|++.+..  .++.+|..|+||||+|+..|+.+++++|+++|.+      ++.+|.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------~~~~~~   76 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG------VLVAER   76 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------SSCCCT
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCCCC
Confidence            44555555555555555555555555544221  1445555555555555555555555555554322      444555


Q ss_pred             CCCcHHHHHHHCCcHHHHHHHHhcc
Q 043149           92 EGNTLLHISISRSHIQIVRLIVKRV  116 (344)
Q Consensus        92 ~G~TpLH~Aa~~g~~~~v~~Ll~~~  116 (344)
                      .|+||||+|+..|+.+++++|++++
T Consensus        77 ~g~tpL~~A~~~~~~~~v~~Ll~~~  101 (282)
T 1oy3_D           77 GGHTALHLACRVRAHTCACVLLQPR  101 (282)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSC
T ss_pred             CCCCHHHHHHHcCCcchhHhhhccC
Confidence            5555555555555555555555543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.92  E-value=7.1e-25  Score=187.50  Aligned_cols=141  Identities=18%  Similarity=0.163  Sum_probs=130.4

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +++.|++.+.+ ++.+|..|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|++++.  
T Consensus        50 ~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--  125 (192)
T 2rfm_A           50 AIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA--  125 (192)
T ss_dssp             GHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--
T ss_pred             HHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC--
Confidence            46788888776 888999999999999999999999999987 67788999999999999999999999999999654  


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG  155 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~g  155 (344)
                          .++.+|.+|+||||+|+..|+.+++++|++++ ++++.+|..|.||+++|+     ..++.+++++|+++|
T Consensus       126 ----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~-----~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          126 ----NVNDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASAR-----IFGRQEVIKIFTEVR  190 (192)
T ss_dssp             ----CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHH-----HTTCHHHHHHHHHHH
T ss_pred             ----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHH-----HhCcHHHHHHHHhcc
Confidence                47789999999999999999999999999999 999999999999999999     889999999999864

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1e-24  Score=176.46  Aligned_cols=128  Identities=23%  Similarity=0.226  Sum_probs=116.7

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCC
Q 043149           15 VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGN   94 (344)
Q Consensus        15 ~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~   94 (344)
                      .....|.||||+||..|+.++++.|++. +.+++..|..|+||||+|+.+|+.+++++|++++.      .++.+|.+|+
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~d~~g~   81 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA------DVNAVDAIGF   81 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTCC
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCcCCCCCC
Confidence            3556799999999999999999999887 77889999999999999999999999999999654      4778999999


Q ss_pred             cHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcC
Q 043149           95 TLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG  155 (344)
Q Consensus        95 TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~g  155 (344)
                      ||||+|+..|+.+++++|++++ ++++.+|..|+||+|+|+     ..++.+++++|++.|
T Consensus        82 t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~-----~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           82 TPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISI-----GNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHH-----HCCCHHHHHHHHHcC
Confidence            9999999999999999999999 999999999999999999     888999999999876

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.92  E-value=2.6e-24  Score=181.25  Aligned_cols=127  Identities=23%  Similarity=0.317  Sum_probs=119.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHH
Q 043149           22 TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISI  101 (344)
Q Consensus        22 TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa  101 (344)
                      ++|+.||+.|+.++|+.||+. +.+++.+|.+|+||||+|+..++.+++++|++.|.      .++.+|.+|+||||+|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga------d~~~~d~~g~TpLh~A~   78 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA------DVNAKDSDGRTPLHHAA   78 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc------chhhhccCCCCHHHHHH
Confidence            479999999999999999986 78899999999999999999999999999999654      47889999999999999


Q ss_pred             HCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149          102 SRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus       102 ~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      ..|+.+++++|+++| +++|.+|.+|+||||+|+     ..++.+++++|+++|++++..
T Consensus        79 ~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~-----~~g~~~~v~~Ll~~gad~~~~  132 (169)
T 4gpm_A           79 ENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAA-----ENGHKEVVKLLISKGADVNTS  132 (169)
T ss_dssp             HTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCC
T ss_pred             HcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCcccc
Confidence            999999999999999 999999999999999999     889999999999999998873

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.92  E-value=2.7e-24  Score=188.18  Aligned_cols=149  Identities=15%  Similarity=0.220  Sum_probs=113.7

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC-CCccc-ccCCCChHHHHHHHcCCHHHHHHHHhchhc
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACP-ESILQ-VTIRKETALHVAAKYDRLEVLETMLGWLRY   79 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~-~~~~~-~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~   79 (344)
                      |+.|++.+++..+.+|.+|.||||+|+..|+.++++.|++.+. ..++. .|..|+||||+|+..|+.+++++|++++..
T Consensus        18 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~   97 (228)
T 2dzn_A           18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK   97 (228)
T ss_dssp             HHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSC
T ss_pred             HHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            6778888888777788888888888888888888888887741 33444 778888888888888888888888886521


Q ss_pred             cCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcC-CCC
Q 043149           80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG-GRE  158 (344)
Q Consensus        80 ~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~g-a~~  158 (344)
                          ..++.+|.+|.||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+     ..++.+++++|++.| +++
T Consensus        98 ----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~  167 (228)
T 2dzn_A           98 ----PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAA-----SVGSLKLIELLCGLGKSAV  167 (228)
T ss_dssp             ----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHH-----HTTCHHHHHHHHTTTCCCS
T ss_pred             ----cccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHH-----HcCCHHHHHHHHhcCcccc
Confidence                335667777777777777777777777777777 777777777777777777     666777777777777 665


Q ss_pred             CC
Q 043149          159 RS  160 (344)
Q Consensus       159 ~~  160 (344)
                      +.
T Consensus       168 ~~  169 (228)
T 2dzn_A          168 NW  169 (228)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.91  E-value=3.1e-24  Score=189.01  Aligned_cols=146  Identities=20%  Similarity=0.258  Sum_probs=95.7

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      ++.|++.+.+ ++..|.+|.||||+|+..|+.++++.|++. +..++..|..|.||||+|+..|+.+++++|++.+.   
T Consensus        27 v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~---  101 (237)
T 3b7b_A           27 CHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ---  101 (237)
T ss_dssp             HHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC---
T ss_pred             HHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC---
Confidence            5566666555 666777777777777777777777666654 55666667777777777777777777777776531   


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                        ..++..|..|.||||+|+..|+.+++++|++++ ++++.+|..|.||+|+|+     ..++.+++++|++.|++++.
T Consensus       102 --~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~  172 (237)
T 3b7b_A          102 --MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-SDINIRDNEENICLHWAA-----FSGCVDIAEILLAAKCDLHA  172 (237)
T ss_dssp             --CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HHCCHHHHHHHHTTTCCTTC
T ss_pred             --CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHH-----HCCCHHHHHHHHHcCCCCCC
Confidence              234555666666666666666666666666666 666666666666666666     55566666666666666554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.91  E-value=1.7e-24  Score=193.49  Aligned_cols=147  Identities=16%  Similarity=0.189  Sum_probs=137.4

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.|++.+.+ ++.+|..|.||||+|+..|+.++++.|++.++..++..|..|+||||+|+..|+.+++++|+++|.  
T Consensus        72 ~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--  148 (253)
T 1yyh_A           72 AAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA--  148 (253)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC--
T ss_pred             HHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCC--
Confidence            46788888776 889999999999999999999999999998777889999999999999999999999999999654  


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                          .++.+|.+|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+     ..++.+++++|+++|++++.
T Consensus       149 ----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~-----~~~~~~~v~~Ll~~ga~~~~  218 (253)
T 1yyh_A          149 ----DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAA-----REGSYETAKVLLDHFANRDI  218 (253)
T ss_dssp             ----CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHTTCCTTC
T ss_pred             ----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH-----HCCCHHHHHHHHHcCCCccc
Confidence                47789999999999999999999999999999 999999999999999999     88999999999999999876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=8.6e-25  Score=176.85  Aligned_cols=130  Identities=22%  Similarity=0.225  Sum_probs=115.7

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCC
Q 043149           15 VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGN   94 (344)
Q Consensus        15 ~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~   94 (344)
                      .+|.+|.||||+|+..|+.++++.|++. +..++.+|..|+||||+|+..|+.+++++|++++.      .++.+|..|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~   77 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA------LVNTTGYQND   77 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCGGGC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------cccCcCCCCC
Confidence            6789999999999999999999998886 77889999999999999999999999999999654      4778999999


Q ss_pred             cHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCC
Q 043149           95 TLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGR  157 (344)
Q Consensus        95 TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~  157 (344)
                      ||||+|+..|+.+++++|++++ ++++.+|..|.||+++|+     ..+..+++++|.+.+..
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~-----~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTD-----DESMKSLLLLPEKNESS  134 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCC-----CHHHHHHHSCC------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHh-----hccHHHHHhhccccccC
Confidence            9999999999999999999998 999999999999999999     88888888877766443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=7.2e-24  Score=193.02  Aligned_cols=145  Identities=17%  Similarity=0.173  Sum_probs=124.1

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.||+.+.+ ++.+|.+|.||||+|+..|+.++++.|++. +..++.+|..|+||||+|+..|+.+++++|++++.+.
T Consensus        74 ~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  151 (285)
T 3d9h_A           74 SLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV  151 (285)
T ss_dssp             HHHHHHHTTCC-SCEECTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC
Confidence            36778887766 888999999999999999999999888876 7788889999999999999999999999999976553


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                            + .+.+|.||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+     ..++.+++++|++.|++++.
T Consensus       152 ------~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~  218 (285)
T 3d9h_A          152 ------Q-PESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLAC-----ENQQRACVKKLLESGADVNQ  218 (285)
T ss_dssp             ------S-CSCTTSCHHHHHHHHTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHH-----HTTCHHHHHHHHHTTCCTTC
T ss_pred             ------C-CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHH-----HcCcHHHHHHHHHCCCCCCC
Confidence                  2 2345888888888888888888888888 888888888888888888     77888888888888888774

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.91  E-value=3.3e-24  Score=178.74  Aligned_cols=135  Identities=22%  Similarity=0.248  Sum_probs=124.2

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCC
Q 043149           15 VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGN   94 (344)
Q Consensus        15 ~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~   94 (344)
                      ..|.+|.||||.|+..|+.++++.|++..+...+..+..|+||||+|+.+|+.+++++|++++.      .++.+|.+|+
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~   76 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA------DVHAKDKGGL   76 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSC
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCC------CCCccCCCCC
Confidence            3578899999999999999999999998888888889999999999999999999999999654      3778999999


Q ss_pred             cHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149           95 TLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus        95 TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      ||||+|+..|+.+++++|++++ ++++.+|..|+||||+|+     ..++.+++++|+++|++++..
T Consensus        77 t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~~  137 (165)
T 3twr_A           77 VPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAA-----AKGKYEICKLLLQHGADPTKK  137 (165)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCC
T ss_pred             CHHHHHHHcCcHHHHHHHHhCC-CCCCCcCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCccc
Confidence            9999999999999999999999 999999999999999999     888999999999999998763

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=5.8e-25  Score=182.08  Aligned_cols=134  Identities=14%  Similarity=0.139  Sum_probs=117.0

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCC
Q 043149           13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDE   92 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~   92 (344)
                      ....+..|.||||+|+..|+.++++.|++. +..++..|..|+||||+|+ .|+.+++++|+++|.      .++.+|..
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~------~~~~~d~~   76 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA------EPNCADPA   76 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC------CCCCCCTT
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCC------CCCCcCCC
Confidence            455688999999999999999999999976 7789999999999999985 999999999999654      47889999


Q ss_pred             CCc-HHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           93 GNT-LLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        93 G~T-pLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      |+| |||+|+..|+.+++++|++++ ++++.+|..|+||||+|+     ..++.+++++|+++|++++.
T Consensus        77 g~ttpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~-----~~~~~~~v~~Ll~~ga~~~~  139 (156)
T 1bi7_B           77 TLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAE-----ELGHRDVARYLRAAAGGTRG  139 (156)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHH-----HHTCHHHHHHHSSCC-----
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHH-----HhCHHHHHHHHHHcCCCCCc
Confidence            999 999999999999999999999 999999999999999999     88899999999999999877

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.91  E-value=6.5e-24  Score=187.11  Aligned_cols=150  Identities=18%  Similarity=0.202  Sum_probs=98.9

Q ss_pred             HHHHHh---cCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchh
Q 043149            2 VLRLID---FDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR   78 (344)
Q Consensus         2 v~~LL~---~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~   78 (344)
                      |+.|++   ..+..++.+|..|.||||+|+..|+.++++.|++. +..++..|..|+||||+|+..|+.+++++|++.+.
T Consensus        25 v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~  103 (241)
T 1k1a_A           25 VHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA  103 (241)
T ss_dssp             HHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            445554   34445777778888888888888888888777765 56677777778888888888888888888877654


Q ss_pred             ccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCccccccc-CCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCC
Q 043149           79 YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN-SKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGR  157 (344)
Q Consensus        79 ~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n-~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~  157 (344)
                      .  ....++..|..|+||||+|+..|+.+++++|++++ ++++..+ ..|.||||+|+     ..++.+++++|+++|++
T Consensus       104 ~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~  175 (241)
T 1k1a_A          104 P--GTLDLEARNYDGLTALHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAV-----ENNSLSMVQLLLQHGAN  175 (241)
T ss_dssp             T--TSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHH-----HTTCHHHHHHHHHTTCC
T ss_pred             C--ccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHHHH-----HcCCHHHHHHHHHcCCC
Confidence            2  11234555666666666666666666666666665 6666555 55666666666     55556666666666666


Q ss_pred             CCC
Q 043149          158 ERS  160 (344)
Q Consensus       158 ~~~  160 (344)
                      ++.
T Consensus       176 ~~~  178 (241)
T 1k1a_A          176 VNA  178 (241)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.91  E-value=3.4e-24  Score=188.02  Aligned_cols=148  Identities=20%  Similarity=0.231  Sum_probs=135.9

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.|++.+.+ ++.+|..|.||||+|+..|+.++++.|++. +.+++.+|..|+||||+|+..|+.+++++|++++.+ 
T Consensus        55 ~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-  131 (231)
T 3aji_A           55 IVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-  131 (231)
T ss_dssp             HHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             HHHHHHHhCCC-CCCcCCCCCCHHHHHHHcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            46788888766 889999999999999999999999888886 778889999999999999999999999999996543 


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                           ++.+|..|.||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+     ..++.+++++|+++|++++.
T Consensus       132 -----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~  200 (231)
T 3aji_A          132 -----PDAKDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLAC-----DEERVEEAKFLVTQGASIYI  200 (231)
T ss_dssp             -----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCSCC
T ss_pred             -----CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCCHHHHHH-----HCCCHHHHHHHHHCCCCCCC
Confidence                 6778999999999999999999999999999 999999999999999999     88899999999999999876


Q ss_pred             CC
Q 043149          161 SL  162 (344)
Q Consensus       161 ~~  162 (344)
                      ..
T Consensus       201 ~~  202 (231)
T 3aji_A          201 EN  202 (231)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.91  E-value=8.9e-24  Score=184.84  Aligned_cols=149  Identities=17%  Similarity=0.178  Sum_probs=127.2

Q ss_pred             CHHHHHhcC--CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhC-CCCcccccCCCChHHHHHHHcCCHHHHHHHHhch
Q 043149            1 MVLRLIDFD--RNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAAC-PESILQVTIRKETALHVAAKYDRLEVLETMLGWL   77 (344)
Q Consensus         1 ~v~~LL~~~--~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~-~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~   77 (344)
                      +++.|++.+  .+.....|..|.||||+|+..|+.++++.|++.+ +..++..|..|+||||+|+..|+.+++++|+++|
T Consensus        51 ~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  130 (228)
T 2dzn_A           51 ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG  130 (228)
T ss_dssp             HHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC
Confidence            367788877  5533338889999999999999999998888763 2677888889999999999999999999999865


Q ss_pred             hccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHH-HcCC
Q 043149           78 RYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVR-KAGG  156 (344)
Q Consensus        78 ~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~-~~ga  156 (344)
                      .      .++.+|..|+||||+|+..|+.+++++|++.++++++.+|..|+||||+|+     ..++.+++++|+ +.|+
T Consensus       131 ~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~-----~~~~~~~v~~Ll~~~ga  199 (228)
T 2dzn_A          131 A------SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL-----AEGHGDAAVLLVEKYGA  199 (228)
T ss_dssp             C------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHHCC
T ss_pred             C------CccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHH-----HcCCHHHHHHHHHhcCC
Confidence            4      367788999999999999999999999999887889999999999999999     788899999999 8899


Q ss_pred             CCCC
Q 043149          157 RERS  160 (344)
Q Consensus       157 ~~~~  160 (344)
                      +++.
T Consensus       200 ~~~~  203 (228)
T 2dzn_A          200 EYDL  203 (228)
T ss_dssp             CSCC
T ss_pred             CCCc
Confidence            8876

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.91  E-value=2e-24  Score=192.89  Aligned_cols=147  Identities=16%  Similarity=0.165  Sum_probs=128.2

Q ss_pred             CHHHHHhcCCcccc----------ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCC-------------CChH
Q 043149            1 MVLRLIDFDRNLVR----------VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIR-------------KETA   57 (344)
Q Consensus         1 ~v~~LL~~~~~~~~----------~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~-------------G~t~   57 (344)
                      +|+.||+.+.+.-.          .+|..|.||||+|+..|+.++++.|++. +.+++..|..             |+||
T Consensus        61 ~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~g~tp  139 (256)
T 2etb_A           61 CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQGTCFYFGELP  139 (256)
T ss_dssp             THHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCSSSCCCSCSSH
T ss_pred             HHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccccccccccccccccCCCCH
Confidence            57788887665221          2357899999999999999999988887 7778888876             9999


Q ss_pred             HHHHHHcCCHHHHHHHHh---chhccCccccccccCCCCCcHHHHHHH--CCcHH-------HHHHHHhccCccc-----
Q 043149           58 LHVAAKYDRLEVLETMLG---WLRYVNMDDILNWKNDEGNTLLHISIS--RSHIQ-------IVRLIVKRVRDQI-----  120 (344)
Q Consensus        58 Lh~A~~~g~~~iv~~Ll~---~~~~~~~~~~ln~~d~~G~TpLH~Aa~--~g~~~-------~v~~Ll~~~~~~~-----  120 (344)
                      ||+|+..|+.+++++|++   .|.      .+|.+|.+|+||||+|+.  .++.+       ++++|+++| +++     
T Consensus       140 L~~A~~~~~~~~v~~Ll~~~~~ga------~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~  212 (256)
T 2etb_A          140 LSLAACTKQWDVVTYLLENPHQPA------SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQ  212 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCC------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCC
T ss_pred             HHHHHHcCCHHHHHHHHhccccCC------CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCcccccc
Confidence            999999999999999999   554      478899999999999999  88888       999999999 999     


Q ss_pred             --ccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          121 --NARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       121 --~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                        +.+|..|+||||+|+     ..++.+++++|+++|++...
T Consensus       213 ~~~~~d~~g~tpL~~A~-----~~g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          213 LEEISNHQGLTPLKLAA-----KEGKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             GGGCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCCCHHHHHH-----HhCCHHHHHHHHhCCCCCCC
Confidence              999999999999999     88999999999998776543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.91  E-value=1.6e-24  Score=195.60  Aligned_cols=147  Identities=18%  Similarity=0.197  Sum_probs=125.5

Q ss_pred             CHHHHHhcCCcc------cc----ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccC--------------CCCh
Q 043149            1 MVLRLIDFDRNL------VR----VQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTI--------------RKET   56 (344)
Q Consensus         1 ~v~~LL~~~~~~------~~----~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~--------------~G~t   56 (344)
                      +|+.||+.+.+.      ++    .+|..|.||||+|+..|+.++++.|++. +.+++..+.              .|+|
T Consensus        72 ~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~t  150 (273)
T 2pnn_A           72 TIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGEL  150 (273)
T ss_dssp             HHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBS
T ss_pred             HHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccccCCCC
Confidence            366777765431      22    2667999999999999999999988887 777888886              7999


Q ss_pred             HHHHHHHcCCHHHHHHHHh---chhccCccccccccCCCCCcHHHHHHHCCc---------HHHHHHHHhccCcccc---
Q 043149           57 ALHVAAKYDRLEVLETMLG---WLRYVNMDDILNWKNDEGNTLLHISISRSH---------IQIVRLIVKRVRDQIN---  121 (344)
Q Consensus        57 ~Lh~A~~~g~~~iv~~Ll~---~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~---------~~~v~~Ll~~~~~~~~---  121 (344)
                      |||+|+..|+.+++++|++   .|.      .++.+|.+|+||||+|+..|+         .+++++|+++| ++++   
T Consensus       151 pL~~A~~~g~~~~v~~Ll~~~~~ga------d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~  223 (273)
T 2pnn_A          151 PLSLAACTNQLAIVKFLLQNSWQPA------DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPTL  223 (273)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCC------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHhcccCCC------CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhccccc
Confidence            9999999999999999999   554      477899999999999999988         79999999999 8886   


Q ss_pred             ----cccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCC-CCCC
Q 043149          122 ----ARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGG-RERS  160 (344)
Q Consensus       122 ----~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga-~~~~  160 (344)
                          .+|..|+||||+|+     ..++.+++++|+++|+ ++..
T Consensus       224 ~~~~~~d~~g~TpL~~A~-----~~g~~~iv~~Ll~~ga~dp~~  262 (273)
T 2pnn_A          224 KLEEITNRKGLTPLALAA-----SSGKIGVLAYILQREIHEPEC  262 (273)
T ss_dssp             CGGGCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHHTC----
T ss_pred             ccccccCCCCCCHHHHHH-----HhChHHHHHHHHHCCCCCchh
Confidence                59999999999999     8899999999999999 4444

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.91  E-value=8.3e-25  Score=195.74  Aligned_cols=146  Identities=15%  Similarity=0.157  Sum_probs=127.5

Q ss_pred             HHHHHhcCCc----------cccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccc--------------CCCChH
Q 043149            2 VLRLIDFDRN----------LVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVT--------------IRKETA   57 (344)
Q Consensus         2 v~~LL~~~~~----------~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d--------------~~G~t~   57 (344)
                      |+.||+.+.+          ..+..|.+|.||||+|+..|+.++++.|++. +.+++..|              ..|+||
T Consensus        65 v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tp  143 (260)
T 3jxi_A           65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELP  143 (260)
T ss_dssp             HHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSSH
T ss_pred             HHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccCCCCH
Confidence            5667776532          2445566999999999999999999988886 77888888              689999


Q ss_pred             HHHHHHcCCHHHHHHHHh---chhccCccccccccCCCCCcHHHHHHHCCc---------HHHHHHHHhccCccc-----
Q 043149           58 LHVAAKYDRLEVLETMLG---WLRYVNMDDILNWKNDEGNTLLHISISRSH---------IQIVRLIVKRVRDQI-----  120 (344)
Q Consensus        58 Lh~A~~~g~~~iv~~Ll~---~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~---------~~~v~~Ll~~~~~~~-----  120 (344)
                      ||+|+..|+.+++++|++   .|.      .++.+|.+|+||||+|+..|+         .+++++|+++| +++     
T Consensus       144 L~~A~~~g~~~~v~~Ll~~~~~ga------~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~  216 (260)
T 3jxi_A          144 LSLAACTNQPHIVHYLTENGHKQA------DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTN  216 (260)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCC------CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCC
T ss_pred             HHHHHHcCCHHHHHHHHhccccCC------CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccc
Confidence            999999999999999999   544      478899999999999998887         79999999999 888     


Q ss_pred             --ccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          121 --NARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       121 --~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                        +.+|..|+||||+|+     ..++.+++++|+++|++...
T Consensus       217 ~~~~~d~~g~tpL~~A~-----~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          217 LEALLNNDGLSPLMMAA-----KTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             GGGCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHHHHHHC
T ss_pred             hhhcccCCCCCHHHHHH-----HcCCHHHHHHHHHhCCCccc
Confidence              789999999999999     89999999999999887665

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=2e-24  Score=190.74  Aligned_cols=146  Identities=16%  Similarity=0.097  Sum_probs=124.6

Q ss_pred             HHHHHhcCCc--cccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhc
Q 043149            2 VLRLIDFDRN--LVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY   79 (344)
Q Consensus         2 v~~LL~~~~~--~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~   79 (344)
                      |+.||+.+.+  ..+..+.+|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|++.|. 
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga-   78 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGA-   78 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-
Confidence            4677777655  2345567888999999999999999999987 67889999999999999999999999999999654 


Q ss_pred             cCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCccccccc-CCCCCHHHHH--hhhcCCCccHHHHHHHHHHcCC
Q 043149           80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN-SKDNTAMDMV--KFHLQTKPEFEELKSMVRKAGG  156 (344)
Q Consensus        80 ~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n-~~G~Tpl~~a--~~~~~~~~~~~~i~~~L~~~ga  156 (344)
                           .+|.+|.+|+||||+|+..|+.+++++|+++| ++++.++ ..|+||||+|  +     ..++.+++++|++.|+
T Consensus        79 -----~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~a~-----~~~~~~~v~~Ll~~ga  147 (229)
T 2vge_A           79 -----NVNSPDSHGWTPLHCAASCNDTVICMALVQHG-AAIFATTLSDGATAFEKCDPY-----REGYADCATYLADVEQ  147 (229)
T ss_dssp             -----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCSSTTCCTGGGCCTT-----STTHHHHHHHHHHHHH
T ss_pred             -----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHH-----hcChHHHHHHHHHcCC
Confidence                 47889999999999999999999999999999 9999986 6999999999  7     8899999999999999


Q ss_pred             CCCC
Q 043149          157 RERS  160 (344)
Q Consensus       157 ~~~~  160 (344)
                      +++.
T Consensus       148 ~~~~  151 (229)
T 2vge_A          148 SMGL  151 (229)
T ss_dssp             HTTT
T ss_pred             Cccc
Confidence            8877

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.91  E-value=1.7e-24  Score=195.94  Aligned_cols=144  Identities=20%  Similarity=0.281  Sum_probs=122.1

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.||+.+.+ ++.++.+|.||+|+|+..|+.++++.|++. +.+++.+|..|+||||+|+..|+.+++++|+++|.+ 
T Consensus       101 ~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-  177 (269)
T 4b93_B          101 LIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS-  177 (269)
T ss_dssp             HHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC-
T ss_pred             HHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-
Confidence            46788888877 889999999999999999999999888876 788999999999999999999999999999996644 


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccH-HHHHHHHHHcCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEF-EELKSMVRKAGGRE  158 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~-~~i~~~L~~~ga~~  158 (344)
                           +|.+|..|+||||+|+..|+.+++++|+++| ++++.+|.+|+||||+|+     +.++ .++.+.|...++..
T Consensus       178 -----vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~-----~~~~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          178 -----INASNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAE-----QNSKIMELLQVVPSCVASL  245 (269)
T ss_dssp             -----TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSC-----TTCHHHHHTTC--------
T ss_pred             -----CCccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHH-----hCCcHHHHHHHHHHhchhh
Confidence                 7889999999999999999999999999999 999999999999999998     5543 34444444444443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.91  E-value=1.2e-23  Score=175.57  Aligned_cols=130  Identities=15%  Similarity=0.136  Sum_probs=121.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHH
Q 043149           19 EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLH   98 (344)
Q Consensus        19 ~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH   98 (344)
                      +|.||||.|+..|+.++++.|++. +..++..|..|+||||+|+..|+.+++++|++.+.+      ++..|..|+||||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~   74 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD------PQLLGKGRESALS   74 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------CCCcCCCCCcHHH
Confidence            689999999999999999999988 677899999999999999999999999999996543      6778999999999


Q ss_pred             HHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149           99 ISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus        99 ~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      +|+..|+.+++++|++++ ++++.+|..|.||||+|+     ..++.+++++|+++|++++..
T Consensus        75 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~  131 (167)
T 3v31_A           75 LACSKGYTDIVKMLLDCG-VDVNEYDWNGGTPLLYAV-----HGNHVKCVKMLLESGADPTIE  131 (167)
T ss_dssp             HHHHHTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHcCCHHHHHHHHHCC-CCCCcCCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCCc
Confidence            999999999999999999 999999999999999999     888999999999999998763

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.91  E-value=3.1e-23  Score=175.41  Aligned_cols=131  Identities=20%  Similarity=0.169  Sum_probs=121.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHH
Q 043149           18 REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLL   97 (344)
Q Consensus        18 ~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpL   97 (344)
                      .++.+|||.|+..|+.++++.|++..+..++..|..|+||||+|+..|+.+++++|++.+.      .++.+|.+|+|||
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L   76 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA------RINVMNRGDDTPL   76 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTCCCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC------CCCCcCCCCCCHH
Confidence            5689999999999999999999999888899999999999999999999999999999654      4677899999999


Q ss_pred             HHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           98 HISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        98 H~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      |+|+..|+.+++++|++++ ++++.+|..|.||||+|+     ..++.+++++|+++|++++.
T Consensus        77 ~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~  133 (179)
T 3f6q_A           77 HLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYAC-----FWGQDQVAEDLVANGALVSI  133 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCSSB
T ss_pred             HHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHH-----HcCCHHHHHHHHHCCCCcch
Confidence            9999999999999999999 999999999999999999     88899999999999999876

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.91  E-value=1.2e-23  Score=195.56  Aligned_cols=153  Identities=24%  Similarity=0.327  Sum_probs=119.4

Q ss_pred             CHHHHHhcCCccccccCC-CCCcHHHHHHHcCCHHHHHHHHHhCCCC---------------------------------
Q 043149            1 MVLRLIDFDRNLVRVQGR-EGVTPLHYVAEKGNVDLLCKFLAACPES---------------------------------   46 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~-~G~TpLh~Aa~~G~~~~v~~LL~~~~~~---------------------------------   46 (344)
                      +|+.||+.+.+ ++.++. .|+||||+||..|+.++|+.||+.+ ..                                 
T Consensus        40 ~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (337)
T 4g8k_A           40 LVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHG-ADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGAD  117 (337)
T ss_dssp             HHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             HHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CchhhhccCCCchhHHHHhcccchhhHHhhhccch
Confidence            47788888776 666654 5888888888888888888777642 21                                 


Q ss_pred             ccc-------------------------------------------ccCCCChHHHHHHHcCCHHHHHHHHhc-hhccC-
Q 043149           47 ILQ-------------------------------------------VTIRKETALHVAAKYDRLEVLETMLGW-LRYVN-   81 (344)
Q Consensus        47 ~~~-------------------------------------------~d~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~-   81 (344)
                      ++.                                           .+..|.||||+|+.+|+.+++++|+++ |.+++ 
T Consensus       118 ~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~  197 (337)
T 4g8k_A          118 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA  197 (337)
T ss_dssp             TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTC
T ss_pred             hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCc
Confidence            111                                           233467788888888888888888853 44332 


Q ss_pred             ------------------------------ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHH
Q 043149           82 ------------------------------MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM  131 (344)
Q Consensus        82 ------------------------------~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl  131 (344)
                                                    .+..+|.+|.+|+||||+|+..|+.++++.|++..++++|.+|.+|+|||
T Consensus       198 ~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL  277 (337)
T 4g8k_A          198 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL  277 (337)
T ss_dssp             CCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHH
T ss_pred             cCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHH
Confidence                                          23456788889999999999999999999999875589999999999999


Q ss_pred             HHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          132 DMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       132 ~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      |+|+     ..++.+++++|+++|++++.
T Consensus       278 ~~A~-----~~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          278 LLAV-----ELKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             HHHH-----HTTCHHHHHHHHTTSCSSTT
T ss_pred             HHHH-----HcCCHHHHHHHHHCCCCCCC
Confidence            9999     88899999999999998876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.90  E-value=1.5e-23  Score=176.01  Aligned_cols=129  Identities=18%  Similarity=0.202  Sum_probs=120.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHH
Q 043149           20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHI   99 (344)
Q Consensus        20 G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~   99 (344)
                      +.||||.|+..|+.++++.++..++..++..|..|+||||+|+..|+.+++++|+++|.+      ++.+|..|+||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~   75 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD------PHILAKERESALSL   75 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTTCCCHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------chhhcccCCCHHHH
Confidence            579999999999999999999997777899999999999999999999999999996544      67789999999999


Q ss_pred             HHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          100 SISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       100 Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      |+..|+.+++++|++++ ++++.+|..|+||||+|+     ..++.+++++|+++|++++.
T Consensus        76 A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~  130 (172)
T 3v30_A           76 ASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAV-----RGNHVKCVEALLARGADLTT  130 (172)
T ss_dssp             HHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCccc
Confidence            99999999999999999 999999999999999999     88999999999999999876

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.90  E-value=5.8e-24  Score=192.91  Aligned_cols=140  Identities=15%  Similarity=0.228  Sum_probs=122.3

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHH-----HcCCHHHHHHHHhchhccCccccc
Q 043149           12 LVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAA-----KYDRLEVLETMLGWLRYVNMDDIL   86 (344)
Q Consensus        12 ~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~-----~~g~~~iv~~Ll~~~~~~~~~~~l   86 (344)
                      .++.+|.+|+||||+|+..|+.++++.|++.+...++..|..|+||||+|+     ..++.+++++|++.|.      ..
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~------~~  176 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGN------IN  176 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSC------TT
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCC------Cc
Confidence            478899999999999999999999999998866688889999999999999     6688899999998653      35


Q ss_pred             cccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHH-cCCCCCCCCC
Q 043149           87 NWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRK-AGGRERSSLA  163 (344)
Q Consensus        87 n~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~-~ga~~~~~~~  163 (344)
                      +..|..|+||||+|+..|+.+++++|+++| +++|.+|..|+||||+|+     ..++.+++++|++ .|++++....
T Consensus       177 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~n~~d~~G~TpLh~A~-----~~g~~~iv~~Ll~~~gad~~~~d~  248 (276)
T 4hbd_A          177 AKASQAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCAC-----EHGHKEIAGLLLAVPSCDISLTDR  248 (276)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHTSTTCCTTCCCT
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHH-----HCCCHHHHHHHHhcCCCCCcCcCC
Confidence            667888999999999999999999999998 999999999999999999     8888999999998 8988876433

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.90  E-value=3.4e-23  Score=182.52  Aligned_cols=138  Identities=17%  Similarity=0.202  Sum_probs=118.3

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHH---hCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCcccccccc
Q 043149           13 VRVQGREGVTPLHYVAEKGNVDLLCKFLA---ACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWK   89 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~---~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~   89 (344)
                      ++.+|.+|.||||+||..|+.++++.|++   ..+..++..|..|+||||+|+..|+.+++++|++.|.+      ++.+
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~   75 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS------PMAL   75 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC------cccc
Confidence            56788999999999999999999998887   46788888999999999999999999999999986543      6678


Q ss_pred             CCCCCcHHHHHHHCCcHHHHHHHHhccCc----ccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCCC
Q 043149           90 NDEGNTLLHISISRSHIQIVRLIVKRVRD----QINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSL  162 (344)
Q Consensus        90 d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~----~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~~  162 (344)
                      |.+|+||||+|+..|+.+++++|++.+ .    +++..|..|.||+|+|+     ..++.+++++|++.|++++...
T Consensus        76 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~~  146 (241)
T 1k1a_A           76 DRHGQTAAHLACEHRSPTCLRALLDSA-APGTLDLEARNYDGLTALHVAV-----NTECQETVQLLLERGADIDAVD  146 (241)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHS-CTTSCCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccccCcCCCcHHHHHH-----HcCCHHHHHHHHHcCCCccccc
Confidence            899999999999999999999999987 4    88889999999999999     8888999999999999887644

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=3.3e-23  Score=186.46  Aligned_cols=148  Identities=20%  Similarity=0.266  Sum_probs=134.0

Q ss_pred             CHHHHHhcCCcccccc----------CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCC----
Q 043149            1 MVLRLIDFDRNLVRVQ----------GREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDR----   66 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~----------d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~----   66 (344)
                      +++.|++.+.+ ++..          +..|.||||+|+..|+.++++.|++..+..++..|..|+||||+|+..++    
T Consensus       120 ~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  198 (285)
T 1wdy_A          120 ALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV  198 (285)
T ss_dssp             HHHHHHHTTCC-TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTH
T ss_pred             HHHHHHHhCCC-cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchH
Confidence            36777877766 4544          78899999999999999999999998889999999999999999999999    


Q ss_pred             HHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHH
Q 043149           67 LEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEE  146 (344)
Q Consensus        67 ~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~  146 (344)
                      .+++++|+++|.      .++.+|..|+||||+|+..|+.+++++|+++.+++++.+|..|+||+|+|+     ..++.+
T Consensus       199 ~~i~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~-----~~~~~~  267 (285)
T 1wdy_A          199 EAITHLLLDHGA------DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV-----ELKLKK  267 (285)
T ss_dssp             HHHHHHHHHTTC------CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHH-----HTTCHH
T ss_pred             HHHHHHHHHcCC------CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHH-----HcCcHH
Confidence            999999999654      477899999999999999999999999999433999999999999999999     889999


Q ss_pred             HHHHHHHcCCCCCC
Q 043149          147 LKSMVRKAGGRERS  160 (344)
Q Consensus       147 i~~~L~~~ga~~~~  160 (344)
                      ++++|+++|++++.
T Consensus       268 i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          268 IAELLCKRGASTDC  281 (285)
T ss_dssp             HHHHHHHHSSCSCC
T ss_pred             HHHHHHHcCCCCCc
Confidence            99999999999886

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.90  E-value=3.6e-23  Score=182.18  Aligned_cols=137  Identities=21%  Similarity=0.318  Sum_probs=114.9

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCC
Q 043149           13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDE   92 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~   92 (344)
                      .+.+|.+|.||||+|+..|+.++++.|++. +..++..|..|+||||+|+..|+.+++++|++.|.      .++.+|..
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~   76 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA------LVDPKDAE   76 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC------CCCCCCTT
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC------CCCCCCCC
Confidence            567788888999999999999888888776 66778888888899999998889999988888543      36677888


Q ss_pred             CCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149           93 GNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus        93 G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      |.||||+|+..|+.+++++|++.++.+++..|..|.||+|+|+     ..++.+++++|++.|++++..
T Consensus        77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~  140 (237)
T 3b7b_A           77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT-----EYKHVDLVKLLLSKGSDINIR  140 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHH-----HcCCHHHHHHHHHCCCCCCcc
Confidence            8899999998888999998888877788888888889999888     777888888888888887664

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.90  E-value=8.3e-24  Score=196.52  Aligned_cols=145  Identities=18%  Similarity=0.216  Sum_probs=127.6

Q ss_pred             HHHHhcCCccccc-cCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCC---HHHHHHHHhchh
Q 043149            3 LRLIDFDRNLVRV-QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDR---LEVLETMLGWLR   78 (344)
Q Consensus         3 ~~LL~~~~~~~~~-~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~---~~iv~~Ll~~~~   78 (344)
                      +.|++.+.+ ++. +|.+|+||||+||..|+.++|+.||+. +.+++.+|..|+||||+|+.+|+   .++++.|++++.
T Consensus       114 ~~l~~~g~d-vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~  191 (327)
T 1sw6_A          114 DAFPNTQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  191 (327)
T ss_dssp             HHCTTSCCC-SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             HHHHhcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhh
Confidence            344444444 788 899999999999999999999998887 78899999999999999999998   688888888652


Q ss_pred             ccCccccccccCCCCCcHHHHHHH----CCcHHHHHHHHhccCc------------------------------------
Q 043149           79 YVNMDDILNWKNDEGNTLLHISIS----RSHIQIVRLIVKRVRD------------------------------------  118 (344)
Q Consensus        79 ~~~~~~~ln~~d~~G~TpLH~Aa~----~g~~~~v~~Ll~~~~~------------------------------------  118 (344)
                           ..++.+|.+|+||||+|+.    .|+.+++++|++.+ .                                    
T Consensus       192 -----~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~-~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a  265 (327)
T 1sw6_A          192 -----PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL-MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN  265 (327)
T ss_dssp             -----GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHH-HHHHHHGGGCCEEEC----------------CHHHHH
T ss_pred             -----ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHH-HHHHhcccchHHHhhhhcccCCcccccccCCChhHHH
Confidence                 2378899999999999999    99999999999874 2                                    


Q ss_pred             ---------ccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          119 ---------QINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       119 ---------~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                               ++|.+|..|+||||+|+     ..++.+++++|+++|++++.
T Consensus       266 ~~~~~Ll~~~~n~~d~~G~TpLh~A~-----~~g~~~~v~~Ll~~Gad~~~  311 (327)
T 1sw6_A          266 LDLKWIIANMLNAQDSNGDTCLNIAA-----RLGNISIVDALLDYGADPFI  311 (327)
T ss_dssp             CSHHHHHHHTTTCCCTTSCCHHHHHH-----HHCCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHhCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCcc
Confidence                     58889999999999999     88999999999999999887

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.90  E-value=7.8e-24  Score=192.89  Aligned_cols=145  Identities=16%  Similarity=0.132  Sum_probs=120.0

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCC-ChHHHHHHHcCCHHHHHHHHhchhc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRK-ETALHVAAKYDRLEVLETMLGWLRY   79 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G-~t~Lh~A~~~g~~~iv~~Ll~~~~~   79 (344)
                      +|+.|++.+.+ ++.+|..|.||||+|+..|+.++++.|++. +.+++..|..| .||||+|+..|+.+++++|++++.+
T Consensus        77 ~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~  154 (285)
T 3kea_A           77 IVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS  154 (285)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT
T ss_pred             HHHHHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Confidence            36677777666 777888888888888888888888877776 67777888888 7888888888888888888886543


Q ss_pred             cCccccccccCC-CCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCH-HHHHhhhcCCCccHHHHHHHHHHcCCC
Q 043149           80 VNMDDILNWKND-EGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA-MDMVKFHLQTKPEFEELKSMVRKAGGR  157 (344)
Q Consensus        80 ~~~~~~ln~~d~-~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tp-l~~a~~~~~~~~~~~~i~~~L~~~ga~  157 (344)
                      .        .|. .|+||||+|+..|+.+++++|+++| ++++.+|..|+|| ||+|+     ..++.+++++|+++|++
T Consensus       155 ~--------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~-----~~~~~~~v~~Ll~~gad  220 (285)
T 3kea_A          155 T--------FDLAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAI-----DNKDIEMLQALFKYDIN  220 (285)
T ss_dssp             T--------CCCSTHHHHHHHHHHTTCHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHH-----HHTCHHHHHHHTTSCBC
T ss_pred             c--------ccccCCccHHHHHHHcChHHHHHHHHHcC-CCCCcccCCCCChHHHHHH-----HcCCHHHHHHHHHcCCC
Confidence            2        232 7889999999999999999999998 9999999999997 99999     88889999999999999


Q ss_pred             CCCC
Q 043149          158 ERSS  161 (344)
Q Consensus       158 ~~~~  161 (344)
                      ++..
T Consensus       221 ~~~~  224 (285)
T 3kea_A          221 IYSA  224 (285)
T ss_dssp             STTT
T ss_pred             CCCC
Confidence            8874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=1.6e-23  Score=166.31  Aligned_cols=111  Identities=20%  Similarity=0.249  Sum_probs=101.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcH
Q 043149           17 GREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTL   96 (344)
Q Consensus        17 d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~Tp   96 (344)
                      +..|.||||+|+..|+.++++.|++. +.+++.+|..|+||||+|+..|+.+++++|++++.      .++.+|.+|+||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~d~~g~tp   76 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA------DINAPDKHHITP   76 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC------CTTCCCTTSCCH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC------CCCcCCCCCCCH
Confidence            56789999999999999999999886 67789999999999999999999999999999654      478899999999


Q ss_pred             HHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHh
Q 043149           97 LHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus        97 LH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~  135 (344)
                      ||+|+..|+.+++++|++++ ++++.+|.+|+||+|+|.
T Consensus        77 L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhC
Confidence            99999999999999999998 999999999999999997

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.90  E-value=1.4e-23  Score=197.11  Aligned_cols=136  Identities=17%  Similarity=0.187  Sum_probs=126.0

Q ss_pred             cCCCCCcHHHHHHHcC--CHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCC
Q 043149           16 QGREGVTPLHYVAEKG--NVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEG   93 (344)
Q Consensus        16 ~d~~G~TpLh~Aa~~G--~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G   93 (344)
                      +|.+|.||||+|+..|  +.++++.|++. +.+++..|..|+||||+|+.+|+.+++++|++++.+. ....++.+|..|
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~~~~~g  211 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK-SSLRLDYANKQG  211 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCS-SSCCTTCCCTTC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccc-ccccccccCCCC
Confidence            8889999999999999  99999999987 7889999999999999999999999999999977552 233488899999


Q ss_pred             CcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCC
Q 043149           94 NTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRER  159 (344)
Q Consensus        94 ~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~  159 (344)
                      +||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+     ..++.+++++|+++|++..
T Consensus       212 ~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~-----~~g~~~~v~~Ll~~~~~~~  271 (364)
T 3ljn_A          212 NSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHTVPLYLSV-----RAAMVLLTKELLQKTDVFL  271 (364)
T ss_dssp             CCTTHHHHTTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHH-----HTCCHHHHHHHHHHSCHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-----HhChHHHHHHHHHcCCchh
Confidence            99999999999999999999999 999999999999999999     8899999999999988753

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.90  E-value=4.2e-24  Score=190.81  Aligned_cols=145  Identities=15%  Similarity=0.136  Sum_probs=121.4

Q ss_pred             HHHHhcCCccccc----cCCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCcc-----------cccCCCChHHHHHHHc
Q 043149            3 LRLIDFDRNLVRV----QGREGVTPLHYVAEK---GNVDLLCKFLAACPESIL-----------QVTIRKETALHVAAKY   64 (344)
Q Consensus         3 ~~LL~~~~~~~~~----~d~~G~TpLh~Aa~~---G~~~~v~~LL~~~~~~~~-----------~~d~~G~t~Lh~A~~~   64 (344)
                      +.|++.+.+ ++.    +|.+|+||||+|+..   |+.++++.|++.+ ...+           ..|..|+||||+|+..
T Consensus        23 ~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~  100 (256)
T 2etb_A           23 EYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID-KDSGNPKPLVNAQCTDEFYQGHSALHIAIEK  100 (256)
T ss_dssp             HHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH-HHTTCSSCGGGCCCCSTTTTTCCHHHHHHHT
T ss_pred             HHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC-CcccchhhhcccccccccccCCCHHHHHHHc
Confidence            444455665 666    899999999999999   9999999999863 3222           2347799999999999


Q ss_pred             CCHHHHHHHHhchhccCccccccccCCC-------------CCcHHHHHHHCCcHHHHHHHHh---ccCcccccccCCCC
Q 043149           65 DRLEVLETMLGWLRYVNMDDILNWKNDE-------------GNTLLHISISRSHIQIVRLIVK---RVRDQINARNSKDN  128 (344)
Q Consensus        65 g~~~iv~~Ll~~~~~~~~~~~ln~~d~~-------------G~TpLH~Aa~~g~~~~v~~Ll~---~~~~~~~~~n~~G~  128 (344)
                      |+.+++++|+++|.+      ++.+|..             |+||||+|+..|+.+++++|++   +| +++|.+|..|+
T Consensus       101 g~~~~v~~Ll~~ga~------~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-a~~n~~d~~g~  173 (256)
T 2etb_A          101 RSLQCVKLLVENGAD------VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP-ASLEATDSLGN  173 (256)
T ss_dssp             TCHHHHHHHHHTTCC------TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSC
T ss_pred             CCHHHHHHHHHcCCC------CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CCcCccCCCCC
Confidence            999999999997655      4555554             9999999999999999999999   77 99999999999


Q ss_pred             CHHHHHhhhcCCCccHHH-------HHHHHHHcCCCCC
Q 043149          129 TAMDMVKFHLQTKPEFEE-------LKSMVRKAGGRER  159 (344)
Q Consensus       129 Tpl~~a~~~~~~~~~~~~-------i~~~L~~~ga~~~  159 (344)
                      ||||+|+..   ..++.+       ++++|+++|+++.
T Consensus       174 TpLh~A~~~---~~~~~~~~~~~~~iv~~Ll~~ga~~~  208 (256)
T 2etb_A          174 TVLHALVMI---ADNSPENSALVIHMYDGLLQMGARLC  208 (256)
T ss_dssp             CHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHc---ccCCchhhHHHHHHHHHHHHcCCCcc
Confidence            999999921   155666       9999999999883

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=4.2e-24  Score=189.54  Aligned_cols=146  Identities=17%  Similarity=0.145  Sum_probs=116.4

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      ++.||+.+.+ ++. +..|.||||.|+..|+.++++.|++. +.+++.+|..|+||||+|+.+|+.+++++|+++|.   
T Consensus        21 ~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga---   94 (239)
T 1ycs_B           21 GSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV---   94 (239)
T ss_dssp             ------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC---
T ss_pred             HHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC---
Confidence            5667777766 443 47889999999999999999888876 66889999999999999999999999999999654   


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCC-CHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDN-TAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~-Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                         .+|.+|.+|+||||+|+..|+.+++++|++++ ++++.+|..|. ||+|+|..   ...++.+++++|+++|++.+.
T Consensus        95 ---~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~~---~~~g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B           95 ---NVNAADSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEE---MEEGYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             ---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCS---SSTTCCCHHHHHHHHHHHTTT
T ss_pred             ---CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHHHH---hhhccHHHHHHHHHhhhcccc
Confidence               37889999999999999999999999999999 99999998887 99999931   167788999999999988776

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.90  E-value=2.4e-23  Score=195.53  Aligned_cols=147  Identities=17%  Similarity=0.191  Sum_probs=96.0

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.||+.+.+ ++.+|..|.||||+||..|+.++++.|++.+. .  ..+.+|+||||+|+..|+.+++++|++++.+.
T Consensus        35 ~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  110 (364)
T 3ljn_A           35 EVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGE-V--HSLWHGQKPIHLAVMANKTDLVVALVEGAKER  110 (364)
T ss_dssp             HHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC-C--CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC-C--ccccCCCCHHHHHHHcCCHHHHHHHHHhcccc
Confidence            46788888766 88899999999999999999999998888743 2  22345666666666666666666666652211


Q ss_pred             Cc---------------cccccccCCCCCcHHHHHHHCC--cHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCcc
Q 043149           81 NM---------------DDILNWKNDEGNTLLHISISRS--HIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPE  143 (344)
Q Consensus        81 ~~---------------~~~ln~~d~~G~TpLH~Aa~~g--~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~  143 (344)
                      ..               ....+..|.+|.||||+|+..|  +.+++++|++++ ++++.+|..|.||||+|+     ..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~-----~~g  184 (364)
T 3ljn_A          111 GQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAKDKADETPLMRAM-----EFR  184 (364)
T ss_dssp             TCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT-CCTTCCCTTSCCHHHHHH-----HTT
T ss_pred             CCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC-CCCcccCCCCCCHHHHHH-----HcC
Confidence            00               0112225566666666666666  666666666665 666666666666666666     555


Q ss_pred             HHHHHHHHHHcCCC
Q 043149          144 FEELKSMVRKAGGR  157 (344)
Q Consensus       144 ~~~i~~~L~~~ga~  157 (344)
                      +.+++++|+++|++
T Consensus       185 ~~~~v~~Ll~~g~~  198 (364)
T 3ljn_A          185 NREALDLMMDTVPS  198 (364)
T ss_dssp             CHHHHHHHHHHCSC
T ss_pred             CHHHHHHHHhcccc
Confidence            66666666666555

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=1.1e-23  Score=184.41  Aligned_cols=135  Identities=22%  Similarity=0.241  Sum_probs=114.9

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCC
Q 043149           14 RVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEG   93 (344)
Q Consensus        14 ~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G   93 (344)
                      +..+.+|.||||+||..|+.++++.|++. +..++.+|..|+||||+|+.+|+.+++++|++.     .+..++.+|.+|
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~g~~~~~~d~~g  140 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ-----PNIELNQQNKLG  140 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTS-----TTCCCCCCCTTS
T ss_pred             cccccccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcC-----CCCCccccCCCC
Confidence            44677899999999999999999999985 778899999999999999999999999999985     134578899999


Q ss_pred             CcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           94 NTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        94 ~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      +||||+|+..|+.+++++|+++| ++++.+|.+|+||+++|+     ..+..++++.|++.|+....
T Consensus       141 ~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~-----~~~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          141 DTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMAT-----NAACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCC-----SHHHHHHHC-----------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhc-----chhHHHHHHHHhccchhhhc
Confidence            99999999999999999999999 999999999999999999     89999999999999988766

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=3.9e-23  Score=198.70  Aligned_cols=145  Identities=17%  Similarity=0.328  Sum_probs=94.4

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      ++.|++.+.+ ++..+..|.||||+|+..|+.++++.|++. +...+..|..|+||||+|+..|+.+++++|++++    
T Consensus       228 ~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----  301 (437)
T 1n11_A          228 ARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG----  301 (437)
T ss_dssp             HHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT----
T ss_pred             HHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC----
Confidence            3444444443 455555556666666666666665555543 4445555556666666666666666666666543    


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                        ..++.+|..|+||||+|+..|+.+++++|++++ +++|.+|..|+||||+|+     ..++.+++++|+++|++++.
T Consensus       302 --~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~~A~-----~~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          302 --VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAA-----QQGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             --CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCSCC
T ss_pred             --ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHH-----HCChHHHHHHHHHCcCCCCC
Confidence              335667777777777777777777777777777 777777777777777777     66777777777777777765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.90  E-value=5.2e-23  Score=172.46  Aligned_cols=134  Identities=22%  Similarity=0.230  Sum_probs=121.2

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCC
Q 043149           14 RVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEG   93 (344)
Q Consensus        14 ~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G   93 (344)
                      ......+.||||.||..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|++++.      .++.+|..|
T Consensus         8 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g   80 (169)
T 2y1l_E            8 HHHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA------DVNAVDHAG   80 (169)
T ss_dssp             -----CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTS
T ss_pred             ccCCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCccCCCC
Confidence            34567789999999999999999999887 77888999999999999999999999999999654      367789999


Q ss_pred             CcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           94 NTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        94 ~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      +||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+     ..++.+++++|+++|++++.
T Consensus        81 ~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~  141 (169)
T 2y1l_E           81 MTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAA-----MFGHLEIVEVLLKNGADVNA  141 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999 999999999999999999     88899999999999999876

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.89  E-value=3.5e-23  Score=188.54  Aligned_cols=142  Identities=18%  Similarity=0.134  Sum_probs=126.9

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      |..+|..+  .++.+|.+|.||||+|+..|+.++++.|++. +.+++..  +|+||||+|+..|+.+++++|+++|.+  
T Consensus        15 v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~--   87 (285)
T 3kea_A           15 LKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLD--   87 (285)
T ss_dssp             HHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCC--
T ss_pred             HHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCC--
Confidence            34566554  3789999999999999999999999999987 6666665  599999999999999999999996544  


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCC-CCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKD-NTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G-~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                          ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..| .||||+|+     ..++.+++++|+++|++...
T Consensus        88 ----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~  157 (285)
T 3kea_A           88 ----DSQFDDKGNTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAV-----MLNDVSIVSYFLSEIPSTFD  157 (285)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCSSSGGGSHHHHHH-----HTTCHHHHHHHHTTSCTTCC
T ss_pred             ----CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCccCCCCCCCHHHHHH-----HcCCHHHHHHHHhCCCcccc
Confidence                6779999999999999999999999999998 9999999999 89999999     88899999999999988743

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.89  E-value=2.1e-23  Score=189.24  Aligned_cols=142  Identities=21%  Similarity=0.294  Sum_probs=130.6

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHH-----HcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHh
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVA-----EKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLG   75 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa-----~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~   75 (344)
                      +|+.||+.+...++..|..|.||||+|+     ..|+.++++.|+.. +...+..|..|+||||+|+.+|+.+++++|++
T Consensus       126 ~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~  204 (276)
T 4hbd_A          126 VVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLA  204 (276)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            4788999998679999999999999999     67899999988887 67778889999999999999999999999999


Q ss_pred             chhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHh-ccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149           76 WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK-RVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus        76 ~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~-~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                      .|.+      +|.+|.+|+||||+|+..|+.+++++|++ .+ ++++.+|..|+||||+|+     ..++.+++++|+++
T Consensus       205 ~gad------~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g-ad~~~~d~~g~TpL~~A~-----~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          205 CEAD------VNVQDDDGSTALMCACEHGHKEIAGLLLAVPS-CDISLTDRDGSTALMVAL-----DAGQSEIASMLYSR  272 (276)
T ss_dssp             TTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT-CCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHH
T ss_pred             CCCC------CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC-CCCcCcCCCCCCHHHHHH-----HcCCHHHHHHHHhc
Confidence            6544      78899999999999999999999999999 66 999999999999999999     88999999999987


Q ss_pred             C
Q 043149          155 G  155 (344)
Q Consensus       155 g  155 (344)
                      +
T Consensus       273 ~  273 (276)
T 4hbd_A          273 M  273 (276)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.89  E-value=1e-22  Score=178.81  Aligned_cols=147  Identities=16%  Similarity=0.238  Sum_probs=85.4

Q ss_pred             HHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCc
Q 043149            3 LRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNM   82 (344)
Q Consensus         3 ~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~   82 (344)
                      +.|++.+++.....+..|.||||+|+..|+.++++.|++. +..++..|..|+||||+|+..|+.+++++|++++     
T Consensus        59 ~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-----  132 (240)
T 3eu9_A           59 KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG-----  132 (240)
T ss_dssp             HHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----
T ss_pred             HHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC-----
Confidence            3344444433333333344444444444444444444332 3334444444444444444444444444444432     


Q ss_pred             cccccccCCCCCcHHHHHHHCCc-HHHHHHHHhccCcccccccC-CCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           83 DDILNWKNDEGNTLLHISISRSH-IQIVRLIVKRVRDQINARNS-KDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        83 ~~~ln~~d~~G~TpLH~Aa~~g~-~~~v~~Ll~~~~~~~~~~n~-~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                       ..++.+|.+|.||||+|+..++ .+++++|++.+ ++++..+. .|.||||+|+     ..++.+++++|+++|++++.
T Consensus       133 -~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~-~~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~  205 (240)
T 3eu9_A          133 -QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN-VSVNLGDKYHKNTALHWAV-----LAGNTTVISLLLEAGANVDA  205 (240)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT-CCTTCCCTTTCCCHHHHHH-----HHTCHHHHHHHHHHTCCTTC
T ss_pred             -CCccccCCCCCcHHHHHHHhCChHHHHHHHHhcC-CCcchhhccCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCC
Confidence             2345566666677777664444 56666666666 77888886 8889999998     78888899999999888876


Q ss_pred             CC
Q 043149          161 SL  162 (344)
Q Consensus       161 ~~  162 (344)
                      ..
T Consensus       206 ~~  207 (240)
T 3eu9_A          206 QN  207 (240)
T ss_dssp             BC
T ss_pred             cC
Confidence            43

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.89  E-value=8.8e-23  Score=168.12  Aligned_cols=127  Identities=21%  Similarity=0.247  Sum_probs=116.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHH
Q 043149           20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHI   99 (344)
Q Consensus        20 G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~   99 (344)
                      +.||||.|+..|+.++++.|++.+. ..+ .|..|+||||+|+.+|+.+++++|++.+.      .++.+|..|+||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~   73 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGA-PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV------SRDARTKVDRTPLHM   73 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTC-CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTC------CTTCCCTTCCCHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCC-CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCCCCCCCCHHHH
Confidence            5689999999999999999999854 444 58899999999999999999999999654      367789999999999


Q ss_pred             HHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          100 SISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       100 Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      |+..|+.+++++|++++ ++++.+|..|+||+|+|+     ..++.+++++|+++|++++.
T Consensus        74 A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~  128 (153)
T 1awc_B           74 AASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWAT-----EHNHQEVVELLIKYGADVHT  128 (153)
T ss_dssp             HHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHcChHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCccc
Confidence            99999999999999999 999999999999999999     88899999999999999876

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.89  E-value=7e-23  Score=193.61  Aligned_cols=151  Identities=17%  Similarity=0.172  Sum_probs=99.6

Q ss_pred             HHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchh---c
Q 043149            3 LRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR---Y   79 (344)
Q Consensus         3 ~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~---~   79 (344)
                      +.|++.+.+ ++.+|.+|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|++.+.   +
T Consensus       150 ~~ll~~ga~-vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  227 (373)
T 2fo1_E          150 KECIAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD  227 (373)
T ss_dssp             HHHHHTCCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT
T ss_pred             HHHHhcCCC-CcCCCCCCCCHHHHHHHcChHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC
Confidence            445666655 777888888888888888888888777765 66677777788888888888888888888777651   1


Q ss_pred             cC------------------------------cccc--------ccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccc
Q 043149           80 VN------------------------------MDDI--------LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQIN  121 (344)
Q Consensus        80 ~~------------------------------~~~~--------ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~  121 (344)
                      .+                              .+..        .+..|..|+||||+|+..|+.+++++|+++++++++
T Consensus       228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n  307 (373)
T 2fo1_E          228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD  307 (373)
T ss_dssp             TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT
T ss_pred             hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc
Confidence            11                              0001        112445566666666666666666666655446666


Q ss_pred             cccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          122 ARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       122 ~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      .+|..|+||||+|+     ..++.+++++|+++|++++.
T Consensus       308 ~~d~~g~TpL~~A~-----~~g~~~iv~~Ll~~gad~~~  341 (373)
T 2fo1_E          308 KQDEDGKTPIMLAA-----QEGRIEVVMYLIQQGASVEA  341 (373)
T ss_dssp             CCCTTCCCHHHHHH-----HHTCHHHHHHHHHTTCCSSC
T ss_pred             CcCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCccC
Confidence            66666666666666     55666666666666666554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.88  E-value=5.8e-23  Score=185.29  Aligned_cols=134  Identities=17%  Similarity=0.219  Sum_probs=114.9

Q ss_pred             ccCCCCCcHHHHHHHc---CCHHHHHHHHHhCCC----------CcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149           15 VQGREGVTPLHYVAEK---GNVDLLCKFLAACPE----------SILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus        15 ~~d~~G~TpLh~Aa~~---G~~~~v~~LL~~~~~----------~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      ..|..|+||||+|+..   |+.++++.|++.+..          .....|..|+||||+|+..|+.+++++|+++|.+  
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~--  126 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD--  126 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC--
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC--
Confidence            4588999999999987   999999999987321          1223567899999999999999999999997765  


Q ss_pred             ccccccccCC--------------CCCcHHHHHHHCCcHHHHHHHHh---ccCcccccccCCCCCHHHHHhhhcCCCccH
Q 043149           82 MDDILNWKND--------------EGNTLLHISISRSHIQIVRLIVK---RVRDQINARNSKDNTAMDMVKFHLQTKPEF  144 (344)
Q Consensus        82 ~~~~ln~~d~--------------~G~TpLH~Aa~~g~~~~v~~Ll~---~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~  144 (344)
                          ++.+|.              .|+||||+|+..|+.+++++|++   .+ ++++.+|..|+||||+|+     ..++
T Consensus       127 ----~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-ad~~~~d~~g~tpLh~A~-----~~~~  196 (273)
T 2pnn_A          127 ----VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP-ADISARDSVGNTVLHALV-----EVAD  196 (273)
T ss_dssp             ----TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHH-----HHCC
T ss_pred             ----cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC-CCceeeCCCCCcHHHHHH-----HccC
Confidence                444554              89999999999999999999999   77 999999999999999999     4443


Q ss_pred             ---------HHHHHHHHHcCCCCCC
Q 043149          145 ---------EELKSMVRKAGGRERS  160 (344)
Q Consensus       145 ---------~~i~~~L~~~ga~~~~  160 (344)
                               .+++++|+++|++++.
T Consensus       197 ~~~~~~~~~~~~v~~Ll~~ga~~n~  221 (273)
T 2pnn_A          197 NTVDNTKFVTSMYNEILILGAKLHP  221 (273)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cchhHHHHHHHHHHHHHHhhhhccc
Confidence                     6899999999998864

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=2.1e-23  Score=178.42  Aligned_cols=137  Identities=14%  Similarity=0.001  Sum_probs=109.7

Q ss_pred             HHHHhcCCccccccC-CCCCcHHHHHHHcCCH----HHHHHHHHhCCCCcccccCCCChHHHHHHHcCC------HHHHH
Q 043149            3 LRLIDFDRNLVRVQG-REGVTPLHYVAEKGNV----DLLCKFLAACPESILQVTIRKETALHVAAKYDR------LEVLE   71 (344)
Q Consensus         3 ~~LL~~~~~~~~~~d-~~G~TpLh~Aa~~G~~----~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~------~~iv~   71 (344)
                      +.++..+.   +..+ ..|+||||+|+..|+.    ++++.||+. +.+++.+|..|+||||+|+..++      .++++
T Consensus        23 ~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~   98 (186)
T 3t8k_A           23 LELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCK   98 (186)
T ss_dssp             HHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHH
Confidence            44555443   3344 7799999999999875    478777765 88889999999999999998887      57899


Q ss_pred             HHHhchhccCccccccccCCCCC-cHHHHHHHCC-----cHHHHHHHHh-ccCcccccccCCCCCHHHHHhhhcCCCccH
Q 043149           72 TMLGWLRYVNMDDILNWKNDEGN-TLLHISISRS-----HIQIVRLIVK-RVRDQINARNSKDNTAMDMVKFHLQTKPEF  144 (344)
Q Consensus        72 ~Ll~~~~~~~~~~~ln~~d~~G~-TpLH~Aa~~g-----~~~~v~~Ll~-~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~  144 (344)
                      +|+++|++      +|.+|.+|+ ||||+|+..+     +.+++++|++ +| ++++.+|..|+||||+|+     ..++
T Consensus        99 ~Ll~~Gad------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G~TpL~~A~-----~~~~  166 (186)
T 3t8k_A           99 IFLEKGAD------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWGLTALEFVK-----RCQK  166 (186)
T ss_dssp             HHHHTTCC------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTSCCHHHHHH-----TTTC
T ss_pred             HHHHCCCC------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCCCCHHHHHH-----HcCC
Confidence            99986544      778899999 9999998844     3568899998 77 999999999999999999     8888


Q ss_pred             HHHHHHHHHcC
Q 043149          145 EELKSMVRKAG  155 (344)
Q Consensus       145 ~~i~~~L~~~g  155 (344)
                      .+++++|.+..
T Consensus       167 ~~~v~~L~~~~  177 (186)
T 3t8k_A          167 PIALKMMEDYI  177 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888888653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.88  E-value=1.2e-22  Score=167.55  Aligned_cols=128  Identities=13%  Similarity=0.142  Sum_probs=118.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHH
Q 043149           19 EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLH   98 (344)
Q Consensus        19 ~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH   98 (344)
                      +|.||||.|+..|+.++++.|++..+..++..|..|+||||+ +.+|+.+++++|+++|.+      ++.+|..|+||||
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~   73 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS------PNVQDTSGTSPVH   73 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC------TTCCCTTSCCHHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHH
Confidence            367999999999999999999998666889999999999999 999999999999996544      6789999999999


Q ss_pred             HHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           99 ISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        99 ~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      +|+..|+.+++++|+++| ++++.+|..|+||||+|+     ..++.+++++|++. ++++.
T Consensus        74 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~-~~~~~  128 (156)
T 1bd8_A           74 DAARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAV-----QEGHTAVVSFLAAE-SDLHR  128 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHH-----HHTCHHHHHHHHTT-SCTTC
T ss_pred             HHHHcCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHH-----HhChHHHHHHHHhc-cCCCC
Confidence            999999999999999999 999999999999999999     88899999999998 77665

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=7.2e-23  Score=174.04  Aligned_cols=111  Identities=20%  Similarity=0.209  Sum_probs=103.6

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccC-CCCC
Q 043149           16 QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKN-DEGN   94 (344)
Q Consensus        16 ~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d-~~G~   94 (344)
                      .+.+|.||||+|+..|+.++++.|++  +.+++.+|..|+||||+|+.+|+.+++++|+++|.+      +|.+| .+|+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~~~~~g~  111 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD------LDHRDMRGGL  111 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCSSSSC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCC
Confidence            36789999999999999999999988  778899999999999999999999999999996544      66677 8899


Q ss_pred             cHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHh
Q 043149           95 TLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus        95 TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~  135 (344)
                      ||||+|+..|+.+++++|+++| ++++.+|.+|+||+|+|+
T Consensus       112 tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~  151 (183)
T 3deo_A          112 TALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAR  151 (183)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHhcCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHH
Confidence            9999999999999999999999 999999999999999998

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.88  E-value=4.4e-22  Score=179.07  Aligned_cols=147  Identities=18%  Similarity=0.167  Sum_probs=129.1

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.|++.+.+.-...+..|.||||+|+..|+.++++.|++. +..++..|..|.||||+|+..|+.+++++|+++|.+ 
T Consensus        20 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-   97 (285)
T 1wdy_A           20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-   97 (285)
T ss_dssp             HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-
T ss_pred             HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            367888888874334488999999999999999999888876 777888999999999999999999999999996543 


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccc----------cCCCCCHHHHHhhhcCCCccHHHHHHH
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINAR----------NSKDNTAMDMVKFHLQTKPEFEELKSM  150 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~----------n~~G~Tpl~~a~~~~~~~~~~~~i~~~  150 (344)
                           ++..|..|+||||+|+..|+.+++++|++++ ++++..          +..|.||+|+|+     ..++.+++++
T Consensus        98 -----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~  166 (285)
T 1wdy_A           98 -----VNECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAA-----EKGHVEVLKI  166 (285)
T ss_dssp             -----TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCCCHHHHHH-----HHTCHHHHHH
T ss_pred             -----CCccCcccCCHHHHHHHhCCHHHHHHHHHhC-CCcccccccHHHHHhhccCCCcHHHHHH-----HcCCHHHHHH
Confidence                 6778999999999999999999999999998 888877          788999999999     8888999999


Q ss_pred             HHHc-CCCCCC
Q 043149          151 VRKA-GGRERS  160 (344)
Q Consensus       151 L~~~-ga~~~~  160 (344)
                      |++. |++++.
T Consensus       167 Ll~~~~~~~~~  177 (285)
T 1wdy_A          167 LLDEMGADVNA  177 (285)
T ss_dssp             HHHTSCCCTTC
T ss_pred             HHHhcCCCCCc
Confidence            9987 888776

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.88  E-value=1.4e-22  Score=168.06  Aligned_cols=127  Identities=14%  Similarity=0.160  Sum_probs=116.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHH
Q 043149           18 REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLL   97 (344)
Q Consensus        18 ~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpL   97 (344)
                      +...||||.|+..|+.++++.|++. +..++..|..|+||||+|+. |+.+++++|++.+.      .++.+|..|+|||
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~------~~~~~~~~g~t~L   74 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA------NPDLKDRTGFAVI   74 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTC------CTTCCCTTSCCHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCC------CCCCCCCCCCCHH
Confidence            4567999999999999999999875 67888999999999999999 99999999999654      3677899999999


Q ss_pred             HHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCC
Q 043149           98 HISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRE  158 (344)
Q Consensus        98 H~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~  158 (344)
                      |+|+..|+.+++++|++++ ++++.+|..|+||||+|+     ..++.+++++|+++|++.
T Consensus        75 ~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~  129 (162)
T 1ihb_A           75 HDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAA-----KEGHLRVVEFLVKHTASN  129 (162)
T ss_dssp             HHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHSCCC
T ss_pred             HHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH-----HcCCHHHHHHHHHccCCC
Confidence            9999999999999999999 999999999999999999     888999999999999985

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.88  E-value=4.9e-23  Score=184.18  Aligned_cols=145  Identities=15%  Similarity=0.162  Sum_probs=118.2

Q ss_pred             cCCccccccC----CCCCcHHHHHH---HcCCHHHHHHHHHhCC----------CCcccccCCCChHHHHHHHcCCHHHH
Q 043149            8 FDRNLVRVQG----REGVTPLHYVA---EKGNVDLLCKFLAACP----------ESILQVTIRKETALHVAAKYDRLEVL   70 (344)
Q Consensus         8 ~~~~~~~~~d----~~G~TpLh~Aa---~~G~~~~v~~LL~~~~----------~~~~~~d~~G~t~Lh~A~~~g~~~iv   70 (344)
                      .+.+ ++..+    .+|.||||+|+   ..|+.++++.|++.+.          ...+..|..|+||||+|+..|+.+++
T Consensus        31 ~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v  109 (260)
T 3jxi_A           31 HKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYV  109 (260)
T ss_dssp             HTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHH
T ss_pred             cCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHH
Confidence            5555 55444    77999999999   7799999999998632          23445566899999999999999999


Q ss_pred             HHHHhchhccCccccccccC--------------CCCCcHHHHHHHCCcHHHHHHHHh---ccCcccccccCCCCCHHHH
Q 043149           71 ETMLGWLRYVNMDDILNWKN--------------DEGNTLLHISISRSHIQIVRLIVK---RVRDQINARNSKDNTAMDM  133 (344)
Q Consensus        71 ~~Ll~~~~~~~~~~~ln~~d--------------~~G~TpLH~Aa~~g~~~~v~~Ll~---~~~~~~~~~n~~G~Tpl~~  133 (344)
                      ++|+++|.+      ++.+|              ..|+||||+|+..|+.+++++|++   .+ ++++.+|..|+||||+
T Consensus       110 ~~Ll~~ga~------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-a~~~~~d~~g~TpLh~  182 (260)
T 3jxi_A          110 ELLVEKGAD------VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ-ADLRRQDSRGNTVLHA  182 (260)
T ss_dssp             HHHHHTTCC------TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHH
T ss_pred             HHHHhCCCC------cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CCCcccCCCCCcHHHH
Confidence            999997765      44455              689999999999999999999999   77 9999999999999999


Q ss_pred             HhhhcCCCcc----HHHHHHHHHHcCCCCCC
Q 043149          134 VKFHLQTKPE----FEELKSMVRKAGGRERS  160 (344)
Q Consensus       134 a~~~~~~~~~----~~~i~~~L~~~ga~~~~  160 (344)
                      |+........    ..+++++|+++|++++.
T Consensus       183 A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~  213 (260)
T 3jxi_A          183 LVAIADNTRENTKFVTKMYDLLLIKCAKLFP  213 (260)
T ss_dssp             HHHHCCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHhccCchhHHHHHHHHHHHHHHhCccccc
Confidence            9932211111    15899999999998853

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.88  E-value=4.3e-22  Score=191.38  Aligned_cols=145  Identities=19%  Similarity=0.237  Sum_probs=97.8

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      |+.|++.+.+ ++..|..|.||||+||..|+.++++.|++. +..++.+|..|+||||+|+..|+.+++++|+++|.+  
T Consensus        30 v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--  105 (437)
T 1n11_A           30 VKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN--  105 (437)
T ss_dssp             HHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC--
T ss_pred             HHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC--
Confidence            5667776555 667777777777777777777777777765 566677777777777777777777777777775543  


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                          ++..|..|.||||+|+..|+.+++++|++++ ++.+..+..|.||||+|+     ..++.+++++|+++|++++.
T Consensus       106 ----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~  174 (437)
T 1n11_A          106 ----PNLATTAGHTPLHIAAREGHVETVLALLEKE-ASQACMTKKGFTPLHVAA-----KYGKVRVAELLLERDAHPNA  174 (437)
T ss_dssp             ----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTC
T ss_pred             ----CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCcCCCCCCCCHHHHHH-----HcCCHHHHHHHHhCCCCCCC
Confidence                4445666666666666666666666666665 556666666666666666     55666666666666665554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.88  E-value=8.9e-22  Score=182.52  Aligned_cols=150  Identities=18%  Similarity=0.192  Sum_probs=124.5

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      |+.+|...+..++.+|..|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|++++.+  
T Consensus        40 v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~--  116 (351)
T 3utm_A           40 LMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC--  116 (351)
T ss_dssp             HHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC--
T ss_pred             HHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC--
Confidence            56777776777889999999999999999999999888886 778888999999999999999999999999996543  


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccC------------------------------------
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNS------------------------------------  125 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~------------------------------------  125 (344)
                          ++..|..|.||||+|+..|+.+++++|++++ ++++..|.                                    
T Consensus       117 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (351)
T 3utm_A          117 ----VNAMDLWQFTPLHEAASKNRVEVCSLLLSHG-ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADL  191 (351)
T ss_dssp             ----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccH
Confidence                6778999999999999999999999999998 88776654                                    


Q ss_pred             ------------------CCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149          126 ------------------KDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus       126 ------------------~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                                        .|.||+|+|+..  ...+..+++++|++.|++++..
T Consensus       192 ~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~--~~~~~~~~~~~Ll~~g~~~~~~  243 (351)
T 3utm_A          192 AKVKKTLALEIINFKQPQSHETALHCAVAS--LHPKRKQVAELLLRKGANVNEK  243 (351)
T ss_dssp             HHHHHHTTTCCTTCCCTTTCCCHHHHHHHC--CSTTHHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHHhhcccccCCCCCCCHHHHHHHH--hCccHHHHHHHHHHcCCCcCCc
Confidence                              455666666621  0115678999999999888763

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.87  E-value=2e-22  Score=190.52  Aligned_cols=134  Identities=16%  Similarity=0.280  Sum_probs=99.2

Q ss_pred             ccccCCCCCcHHHHHHHcC---CHHHHHHHHHhCCCCccc--------ccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149           13 VRVQGREGVTPLHYVAEKG---NVDLLCKFLAACPESILQ--------VTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~G---~~~~v~~LL~~~~~~~~~--------~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      ++..|..|.||||+|+..|   +.++++.|++. +..++.        .|..|+||||+|+..|+.+++++|++++    
T Consensus       228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~----  302 (373)
T 2fo1_E          228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK----  302 (373)
T ss_dssp             TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS----
T ss_pred             hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC-CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc----
Confidence            4445555555555555554   45555555544 333332        3456666666666666666666666542    


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRE  158 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~  158 (344)
                       +..++.+|.+|+||||+|+..|+.+++++|+++| ++++.+|..|+||+|+|+     ..++.+++++|+++|++.
T Consensus       303 -~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~-----~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          303 -GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQ-----ANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             -CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHH-----HTTCHHHHHHHHTTC---
T ss_pred             -CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHH-----HcCCHHHHHHHHhcCccc
Confidence             2557889999999999999999999999999999 999999999999999999     889999999999998764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.87  E-value=2.4e-21  Score=176.25  Aligned_cols=135  Identities=14%  Similarity=0.116  Sum_probs=123.5

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCC
Q 043149           13 VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDE   92 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~   92 (344)
                      .+.+|.+|+||||+||..|+.++++.|++. +..++.+|.+|+||||+|+..|+.+++++|++.+.      .++.+|.+
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga------~~~~~~~~  124 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA------QVNGVTAD  124 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTC------CSSCCCTT
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC------CCCCCCCC
Confidence            566899999999999999999999999986 67789999999999999999999999999999654      47789999


Q ss_pred             CCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149           93 GNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus        93 G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      |+||||+|+..|+.+++++|++++ ++++..+ .|.||||+|+     ..++.+++++|++.|++++..
T Consensus       125 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~-~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~  186 (285)
T 3d9h_A          125 WHTPLFNACVSGSWDCVNLLLQHG-ASVQPES-DLASPIHEAA-----RRGHVECVNSLIAYGGNIDHK  186 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTT-CCSSCSC-TTSCHHHHHH-----HHTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCHHHHHHHcCHHHHHHHHHHCC-CCCCCCC-CCCCHHHHHH-----HcCCHHHHHHHHHCCCCCCCc
Confidence            999999999999999999999998 8887654 5999999999     889999999999999998763

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.87  E-value=1.5e-21  Score=171.30  Aligned_cols=147  Identities=16%  Similarity=0.194  Sum_probs=112.2

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      ++.|++.+.+ ++.+|..|.||||+|+..|+.++++.|++.+.......+..|+||||+|+..|+.+++++|++.+.+  
T Consensus        25 ~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~--  101 (240)
T 3eu9_A           25 CRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD--  101 (240)
T ss_dssp             HHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC--
T ss_pred             HHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC--
Confidence            5677777665 7777888888888888888888888888775544444555688888888888888888888875433  


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccH-HHHHHHHHHcCCCCCC
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEF-EELKSMVRKAGGRERS  160 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~-~~i~~~L~~~ga~~~~  160 (344)
                          ++.+|..|.||||+|+..|+.+++++|++++ ++++.+|..|.||+|+|+     ..++ .+++++|++.|++++.
T Consensus       102 ----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~-----~~~~~~~~~~~L~~~~~~~~~  171 (240)
T 3eu9_A          102 ----PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWAA-----YRTHSVDPTRLLLTFNVSVNL  171 (240)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HHCCSSTTHHHHHHTTCCTTC
T ss_pred             ----CcccCCCCCCHHHHHHHcCHHHHHHHHHhcC-CCccccCCCCCcHHHHHH-----HhCChHHHHHHHHhcCCCcch
Confidence                5667788888888888888888888888887 788888888888888887     3333 5777888888888776


Q ss_pred             C
Q 043149          161 S  161 (344)
Q Consensus       161 ~  161 (344)
                      .
T Consensus       172 ~  172 (240)
T 3eu9_A          172 G  172 (240)
T ss_dssp             C
T ss_pred             h
Confidence            3

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.87  E-value=7.8e-22  Score=179.66  Aligned_cols=140  Identities=27%  Similarity=0.315  Sum_probs=118.8

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccc-----------------------------
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVT-----------------------------   51 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d-----------------------------   51 (344)
                      +|+.||+.+.+ ++.+|..|.||||+|+..|+.++++.|++. +.+++..|                             
T Consensus        88 ~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~  165 (299)
T 1s70_B           88 MVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD  165 (299)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCC
Confidence            46788887776 889999999999999999999999988876 44444333                             


Q ss_pred             -------------------------------CCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHH
Q 043149           52 -------------------------------IRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHIS  100 (344)
Q Consensus        52 -------------------------------~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~A  100 (344)
                                                     ..|.||||+|+.+|+.+++++|+++|.      .+|.+|.+|+||||+|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------d~~~~d~~g~tpL~~A  239 (299)
T 1s70_B          166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY------DVNIKDYDGWTPLHAA  239 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC------CTTCCCTTCCCHHHHH
T ss_pred             chhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC------CCCCcCCCCCcHHHHH
Confidence                                           457899999999999999999999654      4778999999999999


Q ss_pred             HHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149          101 ISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus       101 a~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                      +..|+.+++++|+++| ++++.+|..|+||+|+|.     +.....+.+++.+.
T Consensus       240 ~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~-----~~~~~~l~~l~~~~  287 (299)
T 1s70_B          240 AHWGKEEACRILVENL-CDMEAVNKVGQTAFDVAD-----EDILGYLEELQKKQ  287 (299)
T ss_dssp             HHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCC-----SGGGHHHHHHHHHT
T ss_pred             HhcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH-----HHHHHHHHHHHHHH
Confidence            9999999999999999 999999999999999998     65555555555544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.87  E-value=1.1e-22  Score=188.92  Aligned_cols=133  Identities=18%  Similarity=0.118  Sum_probs=117.7

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCC---HHHHHHHHHhCCCCcccccCCCChHHHHHHH----cCCHHHHHHH
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIRKETALHVAAK----YDRLEVLETM   73 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~---~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~----~g~~~iv~~L   73 (344)
                      +|+.||+.+.+ ++.+|.+|+||||+|+..|+   .++++.|++.....++.+|..|+||||+|+.    .|+.+++++|
T Consensus       146 ~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~L  224 (327)
T 1sw6_A          146 LVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY  224 (327)
T ss_dssp             HHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHH
T ss_pred             HHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHH
Confidence            47889998876 89999999999999999998   7888888888667889999999999999999    8999999999


Q ss_pred             Hhchhc--------------------cCc-------------------cccccccCCCCCcHHHHHHHCCcHHHHHHHHh
Q 043149           74 LGWLRY--------------------VNM-------------------DDILNWKNDEGNTLLHISISRSHIQIVRLIVK  114 (344)
Q Consensus        74 l~~~~~--------------------~~~-------------------~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~  114 (344)
                      ++.+..                    ++.                   ...+|.+|.+|+||||+|+..|+.+++++|++
T Consensus       225 l~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~  304 (327)
T 1sw6_A          225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD  304 (327)
T ss_dssp             HHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            987431                    110                   00488899999999999999999999999999


Q ss_pred             ccCcccccccCCCCCHHHHHh
Q 043149          115 RVRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus       115 ~~~~~~~~~n~~G~Tpl~~a~  135 (344)
                      +| ++++.+|.+|+||||+|+
T Consensus       305 ~G-ad~~~~d~~G~TpL~~A~  324 (327)
T 1sw6_A          305 YG-ADPFIANKSGLRPVDFGA  324 (327)
T ss_dssp             TT-CCTTCCCTTSCCGGGGTC
T ss_pred             cC-CCCcccCCCCCCHHHHHH
Confidence            99 999999999999999998

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.86  E-value=1.5e-21  Score=181.25  Aligned_cols=143  Identities=17%  Similarity=0.158  Sum_probs=114.4

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCC---HHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchh
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGN---VDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR   78 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~---~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~   78 (344)
                      |+.||++.+..++.+|..|.||+|.++..+.   .+.+.++|.+.+.+++.+|..|+||||+|+..|+.++++.|++.  
T Consensus       184 v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~--  261 (337)
T 4g8k_A          184 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ--  261 (337)
T ss_dssp             HHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS--
T ss_pred             HHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh--
Confidence            5667766555577778888888877765543   33333334444777888888999999999999999999999874  


Q ss_pred             ccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCC
Q 043149           79 YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRE  158 (344)
Q Consensus        79 ~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~  158 (344)
                         .+..+|.+|.+|+||||+|+..|+.+++++|+++| +++|.     .+||++|+     ..++.+++++|+++||++
T Consensus       262 ---~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G-Ad~n~-----~~~L~~A~-----~~~~~~iv~~Ll~~GA~~  327 (337)
T 4g8k_A          262 ---EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG-ASTDC-----GDLVMTAR-----RNYDHSLVKVLLSHGAKE  327 (337)
T ss_dssp             ---TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS-CSSTT-----CCHHHHHH-----HTTCHHHHHHHHHTTCCC
T ss_pred             ---cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCC-----CCHHHHHH-----HcCCHHHHHHHHHCcCCC
Confidence               23558899999999999999999999999999999 88875     46999999     888999999999999998


Q ss_pred             CC
Q 043149          159 RS  160 (344)
Q Consensus       159 ~~  160 (344)
                      +.
T Consensus       328 d~  329 (337)
T 4g8k_A          328 DF  329 (337)
T ss_dssp             --
T ss_pred             CC
Confidence            86

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.86  E-value=3.7e-22  Score=176.92  Aligned_cols=131  Identities=15%  Similarity=0.096  Sum_probs=90.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcH
Q 043149           17 GREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTL   96 (344)
Q Consensus        17 d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~Tp   96 (344)
                      +..|.||||.|+..|+.+.++.|+++ +..++. +..|.||||.|+..|+.+++++|++.+.      .+|.+|.+|+||
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~d~~g~t~   73 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVD------DPSLPNDEGITA   73 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS------SCCCCCTTSCCH
T ss_pred             CccccccCchhhhhhhHHHHHHHhcc-CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCH
Confidence            45799999999999999999998886 666664 4789999999999999999999998654      478899999999


Q ss_pred             HHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149           97 LHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus        97 LH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      ||+|+..|+.+++++|++++ +++|.+|..|+||||+|+     ..++.+++++|+++|++++..
T Consensus        74 L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~-----~~~~~~~v~~Ll~~ga~~~~~  132 (239)
T 1ycs_B           74 LHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAA-----SCNNVQVCKFLVESGAAVFAM  132 (239)
T ss_dssp             HHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCccee
Confidence            99999999999999999999 999999999999999999     889999999999999998863

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=4.8e-22  Score=176.97  Aligned_cols=133  Identities=19%  Similarity=0.182  Sum_probs=115.8

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccC-CCCC
Q 043149           16 QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKN-DEGN   94 (344)
Q Consensus        16 ~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d-~~G~   94 (344)
                      .+.+|.||||+|+..|+.++++.|+.  +.+++.+|..|+||||+|+.+|+.+++++|+++|.+      +|.+| ..|+
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~~g~  112 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD------LDHRDMRGGL  112 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC------TTCCCSSSCC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------CCcCCCCCCC
Confidence            34689999999999999999998888  678899999999999999999999999999996654      66677 7899


Q ss_pred             cHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCC-----------CccHHHHHHHHHHcCCC
Q 043149           95 TLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQT-----------KPEFEELKSMVRKAGGR  157 (344)
Q Consensus        95 TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~-----------~~~~~~i~~~L~~~ga~  157 (344)
                      ||||+|+..|+.+++++|+++| ++++.+|..|+||+|+|+...+.           ..++.+++++|.+++.+
T Consensus       113 t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          113 TALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            9999999999999999999999 99999999999999999832211           23577888888886444

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.86  E-value=4.3e-22  Score=164.74  Aligned_cols=125  Identities=15%  Similarity=0.105  Sum_probs=97.7

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCCh-HHHHHHHcCCHHHHHHHHhchhc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKET-ALHVAAKYDRLEVLETMLGWLRY   79 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t-~Lh~A~~~g~~~iv~~Ll~~~~~   79 (344)
                      +|+.|++.+.+ ++.+|..|.||||+|+ .|+.++++.|++. +.+++.+|..|+| |||+|+..|+.+++++|+++|.+
T Consensus        27 ~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~  103 (156)
T 1bi7_B           27 EVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR  103 (156)
T ss_dssp             HHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCC
Confidence            36788888766 8999999999999985 9999999888876 7889999999999 99999999999999999996544


Q ss_pred             cCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHh
Q 043149           80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus        80 ~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~  135 (344)
                            ++.+|.+|+||||+|+..|+.+++++|+++| ++++.+|..|.||.+-+.
T Consensus       104 ------~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B          104 ------LDVRDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             ------SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------------
T ss_pred             ------CcccCCCCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccccCC
Confidence                  7789999999999999999999999999999 999999999999987543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=1.4e-20  Score=170.96  Aligned_cols=129  Identities=18%  Similarity=0.233  Sum_probs=115.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCC-----cccccCCCChHHHHHHHc---CCHHHHHHHHhchhccCccccccccCC
Q 043149           20 GVTPLHYVAEKGNVDLLCKFLAACPES-----ILQVTIRKETALHVAAKY---DRLEVLETMLGWLRYVNMDDILNWKND   91 (344)
Q Consensus        20 G~TpLh~Aa~~G~~~~v~~LL~~~~~~-----~~~~d~~G~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~ln~~d~   91 (344)
                      ..++||.|+..|+.+.++.++..+.+.     ++..|..|+||||+|+..   |+.+++++|+++|.+      +|.+|.
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~------in~~d~  203 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN------LDKQTG  203 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC------TTCCCT
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC------ccccCC
Confidence            457999999999999999888874432     444588999999999999   899999999996544      788999


Q ss_pred             CCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           92 EGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        92 ~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      +|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+     ..++.+++++|+++|++...
T Consensus       204 ~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~-----~~~~~~~v~~Ll~~ga~~~~  266 (278)
T 1dcq_A          204 KGSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAK-----RLKHEHCEELLTQALSGRFN  266 (278)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHHTTCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999999 999999999999999999     88999999999999987554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=3.6e-21  Score=150.63  Aligned_cols=110  Identities=26%  Similarity=0.360  Sum_probs=98.4

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCC
Q 043149           14 RVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEG   93 (344)
Q Consensus        14 ~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G   93 (344)
                      ..+|++|.||||+|+..|+.++++.|++. +..++..|..|+||||+|+..++.+++++|++++.      .++.+|.+|
T Consensus         3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~d~~g   75 (115)
T 2l6b_A            3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA------DVNARSKDG   75 (115)
T ss_dssp             -CCSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC------CTTCCCTTC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC------CCcccCCCC
Confidence            35789999999999999999999888876 67788999999999999999999999999999654      377889999


Q ss_pred             CcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHH
Q 043149           94 NTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM  131 (344)
Q Consensus        94 ~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl  131 (344)
                      +||||+|+..|+.+++++|+++| +++|.++..|.||-
T Consensus        76 ~tpl~~A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           76 NTPEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH  112 (115)
T ss_dssp             CCTTHHHHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence            99999999999999999999999 99999999999885

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.7e-20  Score=141.27  Aligned_cols=91  Identities=30%  Similarity=0.467  Sum_probs=56.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHH
Q 043149           19 EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLH   98 (344)
Q Consensus        19 ~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH   98 (344)
                      +|+||||+|+..|+.++++.|++. +.+++.+|..|+||||+|+..|+.+++++|+++|.+      ++.+|.+|+||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~d~~g~t~l~   73 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLH   73 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHH
Confidence            366666666666666666665554 555666666666666666666666666666664332      4556666666666


Q ss_pred             HHHHCCcHHHHHHHHhcc
Q 043149           99 ISISRSHIQIVRLIVKRV  116 (344)
Q Consensus        99 ~Aa~~g~~~~v~~Ll~~~  116 (344)
                      +|+..|+.+++++|+++|
T Consensus        74 ~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           74 LAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             HHHHTTCHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcC
Confidence            666666666666666655

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=2.4e-20  Score=140.45  Aligned_cols=93  Identities=26%  Similarity=0.432  Sum_probs=86.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHH
Q 043149           53 RKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD  132 (344)
Q Consensus        53 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~  132 (344)
                      +|+||||+|+..|+.+++++|++.+.      .+|.+|.+|+||||+|+..|+.+++++|++++ ++++.+|..|+||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~   73 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLH   73 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCC------CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHH
Confidence            48999999999999999999999654      47889999999999999999999999999999 999999999999999


Q ss_pred             HHhhhcCCCccHHHHHHHHHHcCCC
Q 043149          133 MVKFHLQTKPEFEELKSMVRKAGGR  157 (344)
Q Consensus       133 ~a~~~~~~~~~~~~i~~~L~~~ga~  157 (344)
                      +|+     ..++.+++++|+++|++
T Consensus        74 ~A~-----~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           74 LAA-----RNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHH-----HTTCHHHHHHHHHTTCC
T ss_pred             HHH-----HcCCHHHHHHHHHcCCC
Confidence            999     88899999999999985

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.83  E-value=3.4e-20  Score=149.63  Aligned_cols=108  Identities=24%  Similarity=0.293  Sum_probs=97.9

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.|++.+.+ ++.+|..|.||||+|+..|+.++++.|++. +.+++..|..|.||||+|+..|+.+++++|+++|.+ 
T Consensus        29 ~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-  105 (136)
T 2jab_A           29 EVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD-  105 (136)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-
T ss_pred             HHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            36788888776 889999999999999999999999988876 788899999999999999999999999999996543 


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhcc
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRV  116 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~  116 (344)
                           ++.+|.+|+||||+|+..|+.+++++|++.|
T Consensus       106 -----~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          106 -----VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             -----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             -----CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                 6789999999999999999999999999875

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=1.6e-20  Score=172.48  Aligned_cols=128  Identities=20%  Similarity=0.224  Sum_probs=115.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCccc------ccCCCChHHHHHHHc---CCHHHHHHHHhchhccCcccccccc
Q 043149           19 EGVTPLHYVAEKGNVDLLCKFLAACPESILQ------VTIRKETALHVAAKY---DRLEVLETMLGWLRYVNMDDILNWK   89 (344)
Q Consensus        19 ~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~------~d~~G~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~ln~~   89 (344)
                      .+.++||.|+..|+.+.++.|+.. +.+++.      .|..|+||||+|+..   ++.+++++|+++|.+      +|.+
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad------vn~~  222 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH------LDAK  222 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC------TTCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC------CCCC
Confidence            345789999999999999999876 566665      688999999999997   899999999996544      7889


Q ss_pred             CCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCC
Q 043149           90 NDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRER  159 (344)
Q Consensus        90 d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~  159 (344)
                      |.+|+||||+|+..|+.+++++|+++| ++++.+|.+|+||||+|+     ..++.+++++|+++|++..
T Consensus       223 d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~-----~~~~~~iv~~Ll~~ga~~g  286 (301)
T 2b0o_E          223 AADGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIAR-----KKHHKECEELLEQAQAGTF  286 (301)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHH-----HHTCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH-----HcCCHHHHHHHHHhcCCCC
Confidence            999999999999999999999999999 999999999999999999     8889999999999987643

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=1.9e-20  Score=176.46  Aligned_cols=131  Identities=19%  Similarity=0.174  Sum_probs=116.6

Q ss_pred             cCCCCCcHHHHHHHc-CCHHHHHHHHHhCCCCccccc--CCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCC
Q 043149           16 QGREGVTPLHYVAEK-GNVDLLCKFLAACPESILQVT--IRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDE   92 (344)
Q Consensus        16 ~d~~G~TpLh~Aa~~-G~~~~v~~LL~~~~~~~~~~d--~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~   92 (344)
                      .+..+.|+||.|+.. |+.++++.|+.. +.+++..|  ..|+||||+|+..|+.+++++|+++|.      .+|.+|..
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga------dvn~~d~~  267 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA------NVNQADSA  267 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTT
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCC------CCCCCCCC
Confidence            344567899999999 999999999876 77888888  889999999999999999999999654      47889999


Q ss_pred             CCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCC
Q 043149           93 GNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRER  159 (344)
Q Consensus        93 G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~  159 (344)
                      |+||||+|+..|+.+++++|+++| ++++.+|.+|.||||+|+     ..++.+++++|++++....
T Consensus       268 G~TpLh~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~-----~~g~~~iv~lLl~~~~~~~  328 (368)
T 3jue_A          268 GRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAM-----ETANADIVTLLRLAKMREA  328 (368)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHHC---
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHH-----HCCCHHHHHHHHHcCCCcc
Confidence            999999999999999999999999 999999999999999999     8889999999998875543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.82  E-value=4.4e-21  Score=169.29  Aligned_cols=142  Identities=13%  Similarity=0.073  Sum_probs=121.5

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.||+.+.+ ++.+|.+|.||||+|+..|+.++++.|++. +.+++.+|..|+||||+|+..|+.+++++|+++|.+ 
T Consensus        36 ~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-  112 (229)
T 2vge_A           36 VVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA-  112 (229)
T ss_dssp             HHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-
T ss_pred             HHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            47888988876 899999999999999999999999988876 788999999999999999999999999999997654 


Q ss_pred             CccccccccC-CCCCcHHHHH--HHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCC
Q 043149           81 NMDDILNWKN-DEGNTLLHIS--ISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGR  157 (344)
Q Consensus        81 ~~~~~ln~~d-~~G~TpLH~A--a~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~  157 (344)
                           ++.+| .+|+||||+|  +..|+.+++++|++.| ++++.+|..|.||++.+.     ...   ..++|++.|++
T Consensus       113 -----~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~l~~~~-----~~~---~~~~ll~~ga~  178 (229)
T 2vge_A          113 -----IFATTLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLMNSGAVYALWDYS-----AEF---GDELSFREGES  178 (229)
T ss_dssp             -----TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-HHTTTSGGGEEEESSCBC-----CSS---TTBCCBCTTCE
T ss_pred             -----cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-CCcccccCCchHHHHHHh-----hcc---ccccCcccccc
Confidence                 56676 6999999999  9999999999999999 899999888888887555     211   22466677776


Q ss_pred             CC
Q 043149          158 ER  159 (344)
Q Consensus       158 ~~  159 (344)
                      .+
T Consensus       179 ~~  180 (229)
T 2vge_A          179 VT  180 (229)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.82  E-value=1.9e-20  Score=160.02  Aligned_cols=133  Identities=10%  Similarity=0.061  Sum_probs=112.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCccccc-CCCChHHHHHHHcCCH----HHHHHHHhchhccCccccccccCCCC
Q 043149           19 EGVTPLHYVAEKGNVDLLCKFLAACPESILQVT-IRKETALHVAAKYDRL----EVLETMLGWLRYVNMDDILNWKNDEG   93 (344)
Q Consensus        19 ~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d-~~G~t~Lh~A~~~g~~----~iv~~Ll~~~~~~~~~~~ln~~d~~G   93 (344)
                      .+.++||.||+.|+.+.++.++....   +..+ ..|+||||+|+.+++.    +++++|++.|++      +|.+|.+|
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad------vn~~d~~g   75 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD------IKSRTKEG   75 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC------SSCCCTTC
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC------CCCCCCCC
Confidence            36789999999999999999988643   3444 7799999999999975    599999996654      78899999


Q ss_pred             CcHHHHHHHCCc------HHHHHHHHhccCcccccccCCCC-CHHHHHhhhcCCCccHHHHHHHHHH-cCCCCCCC
Q 043149           94 NTLLHISISRSH------IQIVRLIVKRVRDQINARNSKDN-TAMDMVKFHLQTKPEFEELKSMVRK-AGGRERSS  161 (344)
Q Consensus        94 ~TpLH~Aa~~g~------~~~v~~Ll~~~~~~~~~~n~~G~-Tpl~~a~~~~~~~~~~~~i~~~L~~-~ga~~~~~  161 (344)
                      +||||+|+..|+      .+++++|+++| +++|.+|..|+ ||||+|+.......+..+++++|++ +|++++..
T Consensus        76 ~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~  150 (186)
T 3t8k_A           76 TTLFFPLFQGGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK  150 (186)
T ss_dssp             CCTHHHHHHHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC
T ss_pred             CcHHHHHHHcCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc
Confidence            999999999886      58899999999 99999999999 9999999321122456789999999 99999874

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.82  E-value=2.3e-20  Score=150.65  Aligned_cols=109  Identities=16%  Similarity=0.131  Sum_probs=99.1

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCC-CChHHHHHHHcCCHHHHHHHHhchhc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIR-KETALHVAAKYDRLEVLETMLGWLRY   79 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~-G~t~Lh~A~~~g~~~iv~~Ll~~~~~   79 (344)
                      +|+.|++.+.+ ++.+|..|.||||+|+. |+.++++.|++. +.+++.+|.. |+||||+|+..|+.+++++|++++. 
T Consensus        27 ~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-  102 (136)
T 1d9s_A           27 TVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA-  102 (136)
T ss_dssp             HHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCC-
T ss_pred             HHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-
Confidence            46788888766 88999999999999999 999999999987 7788999999 9999999999999999999999654 


Q ss_pred             cCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcc
Q 043149           80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQ  119 (344)
Q Consensus        80 ~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~  119 (344)
                           .++.+|..|+||||+|+..|+.+++++|+++| ++
T Consensus       103 -----~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G-ad  136 (136)
T 1d9s_A          103 -----RLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT-GD  136 (136)
T ss_dssp             -----CCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH-CC
T ss_pred             -----CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence                 47789999999999999999999999999988 53

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.81  E-value=5.6e-20  Score=168.89  Aligned_cols=119  Identities=18%  Similarity=0.165  Sum_probs=104.4

Q ss_pred             HHHHHhcCCccccc------cCCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHH
Q 043149            2 VLRLIDFDRNLVRV------QGREGVTPLHYVAEK---GNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET   72 (344)
Q Consensus         2 v~~LL~~~~~~~~~------~d~~G~TpLh~Aa~~---G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~   72 (344)
                      |+.||+.+.+ ++.      .|..|.||||+|+..   |+.++++.|++. +.+++.+|.+|+||||+|+..|+.+++++
T Consensus       167 v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~  244 (301)
T 2b0o_E          167 VLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTALHYAALYNQPDCLKL  244 (301)
T ss_dssp             HHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            5678877777 555      689999999999997   899999999987 78899999999999999999999999999


Q ss_pred             HHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHh
Q 043149           73 MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus        73 Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~  135 (344)
                      |+++|++      ++.+|.+|+||||+|+..|+.+++++|++++ ++      .|.||||+|+
T Consensus       245 Ll~~gad------~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh~A~  294 (301)
T 2b0o_E          245 LLKGRAL------VGTVNEAGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLHVDY  294 (301)
T ss_dssp             HHHTTCC------CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC---
T ss_pred             HHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhHHHH
Confidence            9996554      6789999999999999999999999999998 54      6899999999

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.80  E-value=3e-19  Score=140.94  Aligned_cols=110  Identities=27%  Similarity=0.434  Sum_probs=99.6

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +++.|++.+.+ ++..|..|.||||+|+..|+.++++.|++. +..++.+|..|+||||+|+..|+.+++++|++++.+ 
T Consensus        17 ~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~-   93 (126)
T 1n0r_A           17 VVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-   93 (126)
T ss_dssp             HHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             HHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-
Confidence            36788888776 888999999999999999999999888876 778889999999999999999999999999996543 


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcc
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQ  119 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~  119 (344)
                           ++.+|.+|+||||+|+..|+.+++++|+++| ++
T Consensus        94 -----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G-ad  126 (126)
T 1n0r_A           94 -----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-AY  126 (126)
T ss_dssp             -----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CC
T ss_pred             -----CcccCCCCCCHHHHHHHcCcHHHHHHHHHcC-CC
Confidence                 6778999999999999999999999999998 53

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.78  E-value=1.1e-19  Score=158.81  Aligned_cols=120  Identities=16%  Similarity=0.141  Sum_probs=95.1

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.||+.+.+ ++.+|..|+||||+||..|+.++++.|++..+..++.+|..|+||||+|+..|+.+++++|+++|.+ 
T Consensus        88 ~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-  165 (222)
T 3ehr_A           88 WLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR-  165 (222)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-
T ss_pred             HHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            36788887776 8899999999999999999999999999877889999999999999999999999999999997554 


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDN  128 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~  128 (344)
                           ++.+|.+|+||||+|+..|+.++++.|++.+ +..+..|.+|.
T Consensus       166 -----~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~~  207 (222)
T 3ehr_A          166 -----TDLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAEDY  207 (222)
T ss_dssp             -----SCCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred             -----CccccCCCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhhh
Confidence                 6789999999999999999999999999998 77777776654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.77  E-value=1.7e-18  Score=139.53  Aligned_cols=101  Identities=20%  Similarity=0.270  Sum_probs=94.3

Q ss_pred             cccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCC
Q 043149           49 QVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDN  128 (344)
Q Consensus        49 ~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~  128 (344)
                      .+|.+|+||||+|+..|+.+++++|++.+.      .++.+|..|+||||+|+..|+.+++++|++++ ++++.+|..|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~   77 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGS------DPNVKDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQND   77 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCGGGC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCcCCCCC
Confidence            578899999999999999999999999654      46789999999999999999999999999999 99999999999


Q ss_pred             CHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149          129 TAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus       129 Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      ||||+|+     ..++.+++++|+++|++++..
T Consensus        78 t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~~  105 (137)
T 3c5r_A           78 SPLHDAA-----KNGHVDIVKLLLSYGASRNAV  105 (137)
T ss_dssp             CHHHHHH-----HTTCHHHHHHHHHTTCCTTCC
T ss_pred             CHHHHHH-----HcCCHHHHHHHHHcCCCCCCC
Confidence            9999999     888999999999999998763

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.77  E-value=1.3e-18  Score=157.95  Aligned_cols=108  Identities=19%  Similarity=0.210  Sum_probs=96.5

Q ss_pred             HHHHHhcCCcc-----ccccCCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHH
Q 043149            2 VLRLIDFDRNL-----VRVQGREGVTPLHYVAEK---GNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETM   73 (344)
Q Consensus         2 v~~LL~~~~~~-----~~~~d~~G~TpLh~Aa~~---G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~L   73 (344)
                      ++.+++.+.+.     ++..|..|.||||+|+..   |+.++++.|++. +.+++.+|..|+||||+|+.+|+.+++++|
T Consensus       146 ~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~~g~~~~v~~L  224 (278)
T 1dcq_A          146 LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAECLKLL  224 (278)
T ss_dssp             HHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            45567777664     444589999999999999   999999998887 788999999999999999999999999999


Q ss_pred             HhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhcc
Q 043149           74 LGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRV  116 (344)
Q Consensus        74 l~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~  116 (344)
                      +++|++      ++.+|.+|.||||+|+..|+.+++++|++++
T Consensus       225 l~~gad------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          225 LRGKAS------IEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcCCC------CCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            996654      7889999999999999999999999999998

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=7.6e-19  Score=137.29  Aligned_cols=100  Identities=27%  Similarity=0.371  Sum_probs=93.7

Q ss_pred             cccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCC
Q 043149           49 QVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDN  128 (344)
Q Consensus        49 ~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~  128 (344)
                      .+|.+|+||||+|+..|+.+++++|++.+.      .++.+|..|+||||+|+..|+.+++++|++++ ++++.+|..|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~   76 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGA------DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGN   76 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTC------CSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCC
Confidence            578899999999999999999999999654      37789999999999999999999999999999 99999999999


Q ss_pred             CHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          129 TAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       129 Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      ||||+|+     ..++.+++++|+++|++++.
T Consensus        77 tpl~~A~-----~~~~~~~~~~Ll~~ga~~n~  103 (115)
T 2l6b_A           77 TPEHLAK-----KNGHHEIVKLLDAKGADVNA  103 (115)
T ss_dssp             CTTHHHH-----TTTCHHHHHHHHTTSSSHHH
T ss_pred             CHHHHHH-----HCCCHHHHHHHHHcCCCCCc
Confidence            9999999     88999999999999999876

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=2.6e-18  Score=161.87  Aligned_cols=126  Identities=17%  Similarity=0.170  Sum_probs=97.9

Q ss_pred             HHHHHhcCCccccccC--CCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhc
Q 043149            2 VLRLIDFDRNLVRVQG--REGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY   79 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d--~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~   79 (344)
                      |+.||+.+.+ ++..|  .+|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++|+++|++
T Consensus       216 v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad  293 (368)
T 3jue_A          216 MADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD  293 (368)
T ss_dssp             HHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCC
Confidence            6778888776 77777  8999999999999999999888876 888999999999999999999999999999996544


Q ss_pred             cCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccC--cccccccCCCCCHHHHHh
Q 043149           80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR--DQINARNSKDNTAMDMVK  135 (344)
Q Consensus        80 ~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~--~~~~~~n~~G~Tpl~~a~  135 (344)
                            ++.+|.+|+||||+|+..|+.+++++|+..+.  .+....+..+.|+++++.
T Consensus       294 ------~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          294 ------LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR  345 (368)
T ss_dssp             ------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred             ------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence                  78899999999999999999999999998752  334456778899998887

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.75  E-value=6e-18  Score=133.82  Aligned_cols=99  Identities=13%  Similarity=0.130  Sum_probs=89.6

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCC
Q 043149           50 VTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT  129 (344)
Q Consensus        50 ~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~T  129 (344)
                      .+..|.||||+|+..|+.+++++|++.+.      .++.+|..|+||||+|+..|+.+++++|++++ ++++.+|..|+|
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t   75 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGE------DVNRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHIT   75 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTC------CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCC
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCC------CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCC
Confidence            35678999999999999999999999654      37789999999999999999999999999999 999999999999


Q ss_pred             HHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          130 AMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       130 pl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      |||+|+     ..++.+++++|+++|++++.
T Consensus        76 pL~~A~-----~~~~~~~v~~Ll~~ga~~~~  101 (123)
T 3aaa_C           76 PLLSAV-----YEGHVSCVKLLLSKGADKTV  101 (123)
T ss_dssp             HHHHHH-----HHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHH-----HcCCHHHHHHHHHcCCCCCC
Confidence            999999     88899999999999999876

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.74  E-value=4.8e-20  Score=174.28  Aligned_cols=131  Identities=11%  Similarity=0.101  Sum_probs=68.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCC--CcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCC
Q 043149           17 GREGVTPLHYVAEKGNVDLLCKFLAACPE--SILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGN   94 (344)
Q Consensus        17 d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~--~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~   94 (344)
                      +.+++||||+||..|+.++++.|++.+..  ..+..|..|+||||+|+.+|+.++|++|+++|++... ..++..+   +
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~-~~i~~~~---~  164 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM-AMIQAEN---Y  164 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH-HHHSHHH---H
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-cccCCCC---C
Confidence            33445666666666666666666554221  1122344556666666666666666666665432100 0111122   5


Q ss_pred             cHHHHHHHCCcHHHHHHHHhccCccccc--ccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCC
Q 043149           95 TLLHISISRSHIQIVRLIVKRVRDQINA--RNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGG  156 (344)
Q Consensus        95 TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~--~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga  156 (344)
                      ||||+|+..|+.+++++|+++| ++++.  +|..|.||||+|+.    ..++.+++++|++.|+
T Consensus       165 TpLh~Aa~~G~~eiv~~Ll~~g-a~~~~~~~d~~g~TpL~~Aa~----~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          165 HAFRLAAENGHLHVLNRLCELA-PTEATAMIQAENYYAFRWAAV----GRGHHNVINFLLDCPV  223 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSC-GGGHHHHHHHHHHHHHHHHHS----TTCCHHHHHHHTTSHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcC-CccchhccCCCCCCHHHHHHH----HCCCHHHHHHHHhCCC
Confidence            6666666666666666666666 55555  56666666666651    2344555555555443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=5.9e-18  Score=131.57  Aligned_cols=95  Identities=21%  Similarity=0.201  Sum_probs=60.3

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccC
Q 043149           11 NLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKN   90 (344)
Q Consensus        11 ~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d   90 (344)
                      ......|.+|.||||+|+..|+.++++.|++. +.+++.+|..|+||||+|+.+|+.+++++|+++|.      .++.+|
T Consensus        15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga------~~~~~d   87 (110)
T 2zgd_A           15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA------DVXAQD   87 (110)
T ss_dssp             -------CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCC
T ss_pred             CcccccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------Cccccc
Confidence            33455666777777777777777777666654 55666667777777777777777777777776443      255666


Q ss_pred             CCCCcHHHHHHHCCcHHHHHHH
Q 043149           91 DEGNTLLHISISRSHIQIVRLI  112 (344)
Q Consensus        91 ~~G~TpLH~Aa~~g~~~~v~~L  112 (344)
                      ..|+||||+|+..|+.+++++|
T Consensus        88 ~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           88 KFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCCcHHHHHHHcCCHHHHHHh
Confidence            7777777777777777776654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.72  E-value=1.8e-17  Score=128.74  Aligned_cols=96  Identities=18%  Similarity=0.231  Sum_probs=82.5

Q ss_pred             CCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccc
Q 043149           44 PESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINAR  123 (344)
Q Consensus        44 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~  123 (344)
                      +......|.+|+|+||+|+..|+.+++++|++.+.      .++.+|..|+||||+|+..|+.+++++|++++ ++++.+
T Consensus        14 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~   86 (110)
T 2zgd_A           14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGA------DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQ   86 (110)
T ss_dssp             --------CCHHHHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             CCcccccCCccchHHHHHHHcCCHHHHHHHHHcCC------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcccc
Confidence            33455678899999999999999999999999654      47789999999999999999999999999998 999999


Q ss_pred             cCCCCCHHHHHhhhcCCCccHHHHHHHH
Q 043149          124 NSKDNTAMDMVKFHLQTKPEFEELKSMV  151 (344)
Q Consensus       124 n~~G~Tpl~~a~~~~~~~~~~~~i~~~L  151 (344)
                      |..|+||+|+|+     ..++.+++++|
T Consensus        87 d~~g~tpl~~A~-----~~~~~~~~~~L  109 (110)
T 2zgd_A           87 DKFGKTAFDISI-----DNGNEDLAEIL  109 (110)
T ss_dssp             CTTSCCHHHHHH-----HHTCHHHHHHH
T ss_pred             ccCCCcHHHHHH-----HcCCHHHHHHh
Confidence            999999999999     88889998876

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.71  E-value=2.4e-17  Score=139.69  Aligned_cols=121  Identities=22%  Similarity=0.276  Sum_probs=105.2

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccc-CCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVT-IRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      ++.||+ +. .++.+|.+|+||||+|+..|+.++++.|++. +.+++.+| ..|+||||+|+..|+.+++++|+++|.+ 
T Consensus        60 v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-  135 (183)
T 3deo_A           60 LSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-  135 (183)
T ss_dssp             HHHHTT-TS-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC-
T ss_pred             HHHHHh-cC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC-
Confidence            677887 44 4899999999999999999999999888876 77788887 8899999999999999999999996544 


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                           ++.+|.+|+||||+|+..++                  ...+.+|+++++     ..+..+++++|.++
T Consensus       136 -----~~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~-----~~~~~~i~~~L~~~  181 (183)
T 3deo_A          136 -----IEVEDERGLTALELAREILK------------------TTPKGNPMQFGR-----RIGLEKVINVLEGQ  181 (183)
T ss_dssp             -----TTCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHH-----HHHHHHHHHHHHTC
T ss_pred             -----CcCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHH-----HcCHHHHHHHHHHh
Confidence                 67899999999999986431                  245789999999     89999999999875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.71  E-value=7.7e-19  Score=166.02  Aligned_cols=140  Identities=14%  Similarity=0.118  Sum_probs=111.7

Q ss_pred             CHHHHHhcCCc--cccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC--cccccCCCChHHHHHHHcCCHHHHHHHHhc
Q 043149            1 MVLRLIDFDRN--LVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPES--ILQVTIRKETALHVAAKYDRLEVLETMLGW   76 (344)
Q Consensus         1 ~v~~LL~~~~~--~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~--~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~   76 (344)
                      +|+.|++.+..  .....|..|.||||+||..|+.++|+.|++.+++.  .+..+.+ +||||+|+.+|+.+++++|+++
T Consensus       107 ~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~  185 (376)
T 2aja_A          107 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL  185 (376)
T ss_dssp             HHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc
Confidence            36778877652  12345678899999999999999999999875321  2222233 9999999999999999999997


Q ss_pred             hhccCccccccc--cCCCCCcHHHHHH-HCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHH
Q 043149           77 LRYVNMDDILNW--KNDEGNTLLHISI-SRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRK  153 (344)
Q Consensus        77 ~~~~~~~~~ln~--~d~~G~TpLH~Aa-~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~  153 (344)
                      |++      ++.  .|.+|+||||+|+ ..|+.+++++|++++ +       .|.||++.|+     ..++.+++++|++
T Consensus       186 ga~------~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a-------~~~taL~~Aa-----~~g~~evv~lL~~  246 (376)
T 2aja_A          186 APT------EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-V-------MLAYAEIHEF-----EYGEKYVNPFIAR  246 (376)
T ss_dssp             CGG------GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-H-------HHHHHHHCTT-----TTTTTTHHHHHHH
T ss_pred             CCc------cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC-C-------ccchHHHHHH-----HCCCHHHHHHHHh
Confidence            654      444  7888999999999 999999999999977 3       2889999999     8899999999999


Q ss_pred             cCCCCCC
Q 043149          154 AGGRERS  160 (344)
Q Consensus       154 ~ga~~~~  160 (344)
                      +|++.+.
T Consensus       247 ~ga~~~~  253 (376)
T 2aja_A          247 HVNRLKE  253 (376)
T ss_dssp             HHHHHHH
T ss_pred             cCccccc
Confidence            9877643

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.70  E-value=2.8e-17  Score=146.01  Aligned_cols=92  Identities=27%  Similarity=0.309  Sum_probs=81.1

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccc-CCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVT-IRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      |+.||+ +. .++.+|.+|+||||+||..|+.++++.|++. +.+++.+| ..|+||||+|+.+|+.+++++|+++|.+ 
T Consensus        61 v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-  136 (244)
T 3ui2_A           61 LSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-  136 (244)
T ss_dssp             HHHTTT-TC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             HHHHHc-CC-CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            677787 54 4899999999999999999999999888876 77888888 7899999999999999999999996544 


Q ss_pred             CccccccccCCCCCcHHHHHHH
Q 043149           81 NMDDILNWKNDEGNTLLHISIS  102 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~  102 (344)
                           ++.+|..|+||||+|+.
T Consensus       137 -----~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          137 -----IEVEDERGLTALELARE  153 (244)
T ss_dssp             -----TTCCCTTCCCHHHHHHH
T ss_pred             -----CCCCCCCCCcHHHHHHH
Confidence                 67789999999999883

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	344
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.004
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.002
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 9e-11
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 22  TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN 81
           TPLH  +  G++ +  K L     S     ++ ET LH+AA+    EV + +L     VN
Sbjct: 2   TPLHVASFMGHLPI-VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 82  MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFH 137
                  K  +  T LH +    H  +V+L+++   +   A  +         +  
Sbjct: 61  A------KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG 110

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 5e-10
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 2   VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVA 61
           ++ L+   +    +  + G+TPLH VA++G+V +    L      +   T    T LHVA
Sbjct: 246 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV-ADVLIKHGVMVDATTRMGYTPLHVA 304

Query: 62  AKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQIN 121
           + Y  +++++ +L     VN       K   G + LH +  + H  IV L++K      N
Sbjct: 305 SHYGNIKLVKFLLQHQADVN------AKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PN 357

Query: 122 ARNSKDNTAMDM 133
             +S   T + +
Sbjct: 358 EVSSDGTTPLAI 369

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 1e-08
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 30/160 (18%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           +V  L+    +   V   +  TPLH  A  G+ + + K+L      +       +T LH 
Sbjct: 15  IVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTE-VAKYLLQNKAKVNAKAKDDQTPLHC 72

Query: 61  AAKYDRLEVLETML---------------------------GWLRYVNMDDILNWKNDEG 93
           AA+     +++ +L                             L  +  +        +G
Sbjct: 73  AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 132

Query: 94  NTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
            T LH++     +++  L+++R     NA      T + +
Sbjct: 133 FTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHV 171

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 6e-08
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
                  G TPLH  A++  V++  + L     S    +++  T LH+AA+    E++  
Sbjct: 191 PHSPAWNGYTPLHIAAKQNQVEV-ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL 249

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD 132
           +L      N+       N  G T LH+     H+ +  +++K     ++A      T + 
Sbjct: 250 LLSKQANGNL------GNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLH 302

Query: 133 MVKFH 137
           +   +
Sbjct: 303 VASHY 307

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 3e-07
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 22  TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN 81
           TPLH  +  GN+ L  KFL      +   T    + LH AA+    +++  +L      N
Sbjct: 299 TPLHVASHYGNIKL-VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 357

Query: 82  MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDN 128
                   + +G T L I+    +I +  ++ K V D+ +     D 
Sbjct: 358 E------VSSDGTTPLAIAKRLGYISVTDVL-KVVTDETSFVLVSDK 397

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
            +++ +   +  V  + + G +PLH  A++G+ D +   L     S  +V+    T L +
Sbjct: 311 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD-IVTLLLKNGASPNEVSSDGTTPLAI 369

Query: 61  AAKYDRLEVLE 71
           A +   + V +
Sbjct: 370 AKRLGYISVTD 380

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 9e-11
 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 7   DFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDR 66
              +       + G T L   AEKG+V++L   L      +         AL  A     
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 194

Query: 67  LEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSK 126
              +E +   L     D  +N + + G T L +++ + H+ +V+ ++++   +IN  +S 
Sbjct: 195 DSDVEAITHLLLDHGAD--VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD 252

Query: 127 DNTAMDM 133
             TA+ +
Sbjct: 253 GKTALLL 259

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 5e-07
 Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 9/127 (7%)

Query: 1   MVLRLIDF---DRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETA 57
           ++  L+D    D N     GR  +      ++  +V+ +   L      +     R +T 
Sbjct: 163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP 222

Query: 58  LHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR 117
           L +A +   L +++ +L           +N  + +G T L +++     +I  L+ KR  
Sbjct: 223 LILAVEKKHLGLVQRLL-----EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

Query: 118 DQINARN 124
              +  +
Sbjct: 278 S-TDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 18/74 (24%), Positives = 32/74 (43%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
           V V+G  G TPL    EK ++ L+ + L      I       +TAL +A +    ++ E 
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 73  MLGWLRYVNMDDIL 86
           +       +  D++
Sbjct: 272 LCKRGASTDCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 26/189 (13%), Positives = 61/189 (32%), Gaps = 36/189 (19%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQV---------- 50
           +V +L++   N+   +   G TPLH   +    D++   L    + +L+           
Sbjct: 20  LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA 79

Query: 51  ----------------------TIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDI--- 85
                                      TA   AA Y +++ L+ +      VN+      
Sbjct: 80  AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139

Query: 86  -LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEF 144
                   G T L  +  + H++++++++  +   +NA ++    A+             
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 199

Query: 145 EELKSMVRK 153
                ++  
Sbjct: 200 AITHLLLDH 208

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 14/70 (20%), Positives = 24/70 (34%)

Query: 19 EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
          E    L    +  +VDL+ + L        Q      T LH A +  R +++E +L    
Sbjct: 4  EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 79 YVNMDDILNW 88
             +      
Sbjct: 64 DPVLRKKNGA 73

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 52  IRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
           +     L  A + + +++++ +L     VN  +      + G T LH ++  S   IV L
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----EEGGWTPLHNAVQMSREDIVEL 57

Query: 112 IV 113
           ++
Sbjct: 58  LL 59

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 17/102 (16%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
              +  +G T LHY A+  N+ ++   +     +  +     +T + +AA+  R+EV+  
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
           ++          +    +   +T   ++ + +H  IV +  +
Sbjct: 240 LIQ-----QGASV-EAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 15/79 (18%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 55  ETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
            TALH AA+   + +++ ++G           + ++++G T + ++     I++V  +++
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGE-----KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 115 RVRDQINARNSKDNTAMDM 133
           +    + A ++ D+TA  +
Sbjct: 243 QGAS-VEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 15/96 (15%)

Query: 56  TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
             LH  A      + E +      VN+ D          T+LH   S S  +    ++  
Sbjct: 4   IKLHTEAA-GSYAITEPIT--RESVNIID-----PRHNRTVLHWIASNSSAEKSEDLIVH 55

Query: 116 VRD-------QINARNSKDNTAMDMVKFHLQTKPEF 144
                      +NA +  +NT + +     + +   
Sbjct: 56  EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA 91

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 52.6 bits (125), Expect = 2e-08
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 6/115 (5%)

Query: 16  QGREGVTPLHYVAEKGNVDLL--CKFLAACPESILQVTIRKETALHVAAKYDRLEVLETM 73
           +G +        A  G    L     L    E +  +      A  +AA+   L VL   
Sbjct: 86  KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLN-- 143

Query: 74  LGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDN 128
              L  +   +I+     E      ++    H+ ++  + +    +  A    +N
Sbjct: 144 --RLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN 196

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.9 bits (105), Expect = 7e-06
 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 9/105 (8%)

Query: 17  GREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE--------TALHVAAKYDRLE 68
           G + V P          ++   F  + P+ +  +  + E          L        L+
Sbjct: 234 GEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLD 293

Query: 69  VLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIV 113
            +  +L       +         + N LL +++   +     L++
Sbjct: 294 DIRFLLSIPGIKALAPT-ATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 11/143 (7%), Positives = 46/143 (32%), Gaps = 16/143 (11%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
           E    L  +      +L   F++A   S++ ++ ++   + +    +  +V + +  +  
Sbjct: 11  ENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYA 70

Query: 79  YVNMDDI-----LNWKNDEGNTLLHISISRSHIQIVRLIVKRVRD--QINARNSKDNTA- 130
           + N +        + K  +   +  ++        +  +   +     +    +++  A 
Sbjct: 71  HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAF 130

Query: 131 --------MDMVKFHLQTKPEFE 145
                   + ++    +  P   
Sbjct: 131 RLAAENGHLHVLNRLCELAPTEI 153

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (122), Expect = 4e-08
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 16/123 (13%)

Query: 22  TPLHYVAEKGNVDLLCKFLAACPESILQVTIR------------KETALHVAAKYDRLEV 69
           T LH++     +           + ++   ++            KE+  +      +  +
Sbjct: 179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 238

Query: 70  LETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT 129
           LE +        + ++LN ++  G+T L+I+    +I IV  ++    D     N     
Sbjct: 239 LENLD---LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLR 294

Query: 130 AMD 132
            +D
Sbjct: 295 PVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 3/112 (2%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR 78
            G TPLH++    N++ L K L     + L      E+ L  A K        T    L 
Sbjct: 106 HGNTPLHWLTSIANLE-LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 164

Query: 79  YVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTA 130
           Y+     L  ++    T+LH  I  S +       K   D +     K    
Sbjct: 165 YLYPC--LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 214

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 2   VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVA 61
            L L     N++  Q   G T L+  A  GN+  +   L                 +   
Sbjct: 241 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS-IVDALLDYGADPFIANKSGLRPVDFG 299

Query: 62  A 62
           A
Sbjct: 300 A 300

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-07
 Identities = 21/137 (15%), Positives = 48/137 (35%), Gaps = 8/137 (5%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
            +   I  D++L     ++  T LH+    G+ +++   L        +           
Sbjct: 18  ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 77

Query: 61  AAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQI 120
           A+                 +     +N  N  G T LH + S++  +I  ++++   +  
Sbjct: 78  ASAGR-------DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-P 129

Query: 121 NARNSKDNTAMDMVKFH 137
           +A++  + TAM      
Sbjct: 130 DAKDHYEATAMHRAAAK 146

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
           + + L++   N    +     T +H  A KGN+ +    L     S         T LH+
Sbjct: 118 IAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKM-IHILLYYKASTNIQDTEGNTPLHL 175

Query: 61  AAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK 114
           A   +R+E  + ++     + +      +N E  T L ++       I++ +V+
Sbjct: 176 ACDEERVEEAKLLVSQGASIYI------ENKEEKTPLQVA-KGGLGLILKRMVE 222

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 3e-06
 Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 23  PLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNM 82
            LH  +  G + ++   ++   +   Q      TALH+A      +++  +L        
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC----GA 169

Query: 83  DDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINAR-NSKDNTAMD 132
           D   N    +G +   ++  R   +I + + +   + +     S+D  + D
Sbjct: 170 DV--NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 218

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 8/49 (16%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 92  EGNTLLHISISRSHIQIVRLIVKRVRDQ---INARNSKDNTAMDMVKFH 137
           +G++ LH++I      +   ++++V+     +N +N+   T + +    
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 9e-04
 Identities = 9/53 (16%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 55  ETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQ 107
           ++ LH+A  ++   +   ++  ++       LN++N+   T LH+++  +  +
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLAVITNQPE 53

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 19 EGVTPLHYVAEKGNVDL---LCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
          +G + LH         L   + + +      +      ++T LH+A   ++ E+ E +LG
Sbjct: 1  DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 76 WLRYVNMDDILNW 88
                + D    
Sbjct: 61 AGCDPELRDFRGN 73

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 4e-06
 Identities = 8/49 (16%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 85  ILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRD--QINARNSKDNTAM 131
           +  +  ++G+T LH+++   H   +  ++        ++ +N    TA+
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTAL 49

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 4e-06
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 8/108 (7%)

Query: 19  EGVTPLHYVAEKGNVDLLCKFLA--ACPESILQVTIRKETALHVAAKYDRLEVLETMLGW 76
           +G T LH      +   L   L   A  E +       +TALH+AA       +E +   
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 77  LRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN 124
              V + +             H++          ++++         +
Sbjct: 68  GAGVLVAERGGHTAL------HLACRVRAHTCACVLLQPRPSHPRDAS 109

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 1   MVLRLIDF--DRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETAL 58
            +  L+ F      + +Q   G T LH  A  G      + L A    +L       TAL
Sbjct: 24  FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS-TVEKLYAAGAGVLVAERGGHTAL 82

Query: 59  HVAAKYDRLEVLETML--GWLRYVNMDDIL-----NWKNDEGNTLLHISISRSHIQIVRL 111
           H+A +         +L        +  D       +   D  +    +    +       
Sbjct: 83  HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP 142

Query: 112 IVKRVRDQINARNSKDNTAMDMVKFH 137
             +  R Q+ A N   +T + +   H
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIH 168

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 1   MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHV 60
              R  D+    +  +  +G TPLH      + +++     A  +          T LH+
Sbjct: 140 EEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198

Query: 61  AAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKR 115
           A +     VLE +L        D     +   G T L  ++ R +  + RL+   
Sbjct: 199 AVEAQAASVLELLLKA----GAD--PTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 4e-06
 Identities = 15/67 (22%), Positives = 27/67 (40%)

Query: 22 TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN 81
           PLH    +     + + L + P  +LQ        LH +  +   E+   +L  +  VN
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 82 MDDILNW 88
          +DD  + 
Sbjct: 62 LDDYPDD 68

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 8e-05
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 37  CKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTL 96
            +FL     S+       +  LH AA    L      L  L        +NW++ +G T 
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSL-----KLIELLCGLGKSAVNWQDKQGWTP 175

Query: 97  LHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
           L  +++  H     L+V++   + +  ++K   A D+
Sbjct: 176 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 9e-05
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 56  TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQ 107
             LH A   +    ++ +L      +   +L  K+ +G   LH S+S    +
Sbjct: 2   YPLHQACMENEFFKVQELL-----HSKPSLLLQKDQDGRIPLHWSVSFQAHE 48

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 13/103 (12%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 16  QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
           + +    PLH  A  G++ L+         ++     +  T L  A      +    ++ 
Sbjct: 134 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV- 192

Query: 76  WLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRD 118
                      +  +++G     +++   + Q+ +  +  V D
Sbjct: 193 ----EKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.5 bits (106), Expect = 4e-06
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 37  CKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTL 96
            ++L +   + ++      TALHVAA     EVL+     L     D  +N K+ +G T 
Sbjct: 182 RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK----LLIQARYD--VNIKDYDGWTP 235

Query: 97  LHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM 133
           LH +      +  R++V+ + D + A N    TA D+
Sbjct: 236 LHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.7 bits (104), Expect = 8e-06
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
                + G T LH  A KG  ++L   L      +        T LH AA + + E    
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLK-LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHI 99
           ++  L  +         N  G T   +
Sbjct: 251 LVENLCDMEA------VNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAK--YDRLEVL 70
           V ++  +G TPLH  A  G  +  C+ L      +  V    +TA  VA +     LE L
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEA-CRILVENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283

Query: 71  E 71
           +
Sbjct: 284 Q 284

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 7e-05
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 55  ETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQ 107
           +T LH+A     L  +  ++   +    +  L+  N+   T LH+++  +   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRE--LDIYNNLRQTPLHLAVITTLPS 54

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 9e-05
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 3/73 (4%)

Query: 19 EGVTPLHYVAEKGNVD---LLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLG 75
          +G TPLH    +GN+     L          +      ++T LH+A       V+  ++ 
Sbjct: 2  DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 76 WLRYVNMDDILNW 88
                  D    
Sbjct: 62 AGASPMALDRHGQ 74

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 91  DEGNTLLHISISRSHIQIVRLIVKRVRDQ---INARNSKDNTAMDMVKFH 137
           ++G+T LHI++ + ++  V  +V   +     ++  N+   T + +    
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 5   LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKY 64
           L++   ++  V  + G +PL +  E  ++ +  + L     ++        +ALH A+  
Sbjct: 129 LLERGADIDAVDIKSGRSPLIHAVENNSLSM-VQLLLQHGANVNAQMYSGSSALHSASGR 187

Query: 65  DRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVR 110
             L ++ T++      +  D  + KN   +T L ++ SR  I I+R
Sbjct: 188 GLLPLVRTLVR-----SGADS-SLKNCHNDTPLMVARSRRVIDILR 227

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 13/129 (10%)

Query: 1   MVLRLI----DFDRNLVRVQGRE-GVTPLHYVAEKGNVDLL--CKFLAACPESILQVTIR 53
            +L+      D    +    G E   T LH      +   L    FL     ++ + T +
Sbjct: 21  GLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK 80

Query: 54  KETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIV 113
             TALH     D              +     +   N+ G T L I+    H     L+ 
Sbjct: 81  GSTALHYCCLTDN------AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 134

Query: 114 KRVRDQINA 122
           + +  + N+
Sbjct: 135 QALSGRFNS 143

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 7/99 (7%)

Query: 13  VRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLET 72
           +      G T LH+ A   N + +         +      + ET L +AA+    E  + 
Sbjct: 116 INAADNSGKTALHWAAAVNNTEAVNIL-LMHHANRDAQDDKDETPLFLAAREGSYEASKA 174

Query: 73  MLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRL 111
           +L    + N        +        ++  R H  IVRL
Sbjct: 175 LLD--NFAN----REITDHMDRLPRDVASERLHHDIVRL 207

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	344
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.91
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.88
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.88
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.88
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.88
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.87
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.86
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.83
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.8
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.79
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.79
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.78
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.77
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.76
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.76
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.76
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.73
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.66
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.59
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.48

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.4e-25  Score=189.92  Aligned_cols=147  Identities=18%  Similarity=0.220  Sum_probs=120.6

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHh--------------------------------CCCCccc
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAA--------------------------------CPESILQ   49 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~--------------------------------~~~~~~~   49 (344)
                      |+++|..++..++.+|.+|+||||+||..|+.++++.++..                                .+.+++.
T Consensus        19 v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~   98 (223)
T d1uoha_          19 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA   98 (223)
T ss_dssp             HHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEe
Confidence            67888999999999999999999999999999988766543                                2335566


Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCC
Q 043149           50 VTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT  129 (344)
Q Consensus        50 ~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~T  129 (344)
                      .|.+|+||||+|+.+|+.+++++|+++|.+      ++.+|.+|.||||+|+..++.+++++|+..+ .+++.+|..|+|
T Consensus        99 ~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d------~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~-~~i~~~d~~g~T  171 (223)
T d1uoha_          99 VNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYEATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTEGNT  171 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTCCC
T ss_pred             eCCCCCchhhHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCccchhhhhcCCcchhhhhcccc-ceeeeccCCCCc
Confidence            777888888888888888888888875543      5667888888888888888888888888877 888888888888


Q ss_pred             HHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          130 AMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       130 pl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      |||+|+     ..++.+++++|++.|++++.
T Consensus       172 pL~~Aa-----~~g~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         172 PLHLAC-----DEERVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             HHHHHH-----HTTCHHHHHHHHHTTCCSCC
T ss_pred             eecccc-----ccCcHHHHHHHHHCCCCCCC
Confidence            888888     77788888888888888776

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2e-24  Score=190.28  Aligned_cols=155  Identities=21%  Similarity=0.265  Sum_probs=124.4

Q ss_pred             CHHHHHhcC--CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchh
Q 043149            1 MVLRLIDFD--RNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLR   78 (344)
Q Consensus         1 ~v~~LL~~~--~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~   78 (344)
                      +|+.||+.+  +..++.+|..|.||||+||..|+.++++.|++. +.+++..|.+|+||||+|+..++.+++++|++...
T Consensus        24 ~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~  102 (255)
T d1oy3d_          24 FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP  102 (255)
T ss_dssp             HHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCC
T ss_pred             HHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccc-cccccccccccchhhhhhhccCchHHHHHHHhhcc
Confidence            367777764  455778889999999999999999999888876 77888889999999999999999999998876432


Q ss_pred             ccC-----------------------------------------ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccC
Q 043149           79 YVN-----------------------------------------MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVR  117 (344)
Q Consensus        79 ~~~-----------------------------------------~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~  117 (344)
                      ...                                         ....++.+|.+|.||||+|+..|+.+++++|++.+ 
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~-  181 (255)
T d1oy3d_         103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG-  181 (255)
T ss_dssp             SSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-
T ss_pred             chhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccc-
Confidence            211                                         23346678888999999999999999999999888 


Q ss_pred             cccc-cccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCCC
Q 043149          118 DQIN-ARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSL  162 (344)
Q Consensus       118 ~~~~-~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~~  162 (344)
                      .+.+ ..+..|.||||+|+     ..++.+++++|+++|++++...
T Consensus       182 ~~~~~~~~~~g~TpL~~A~-----~~~~~~~v~~Ll~~gadin~~d  222 (255)
T d1oy3d_         182 ADLNKPEPTCGRTPLHLAV-----EAQAASVLELLLKAGADPTARM  222 (255)
T ss_dssp             CCTTCCCTTTCCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ccccccccccccccccccc-----cccHHHHHHHHHHCCCCCCCCC
Confidence            5555 45678899999988     7788889999999988887644

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.5e-24  Score=183.84  Aligned_cols=138  Identities=23%  Similarity=0.340  Sum_probs=125.2

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +++.|++.+.+ ++.+|.+|.||||+|+..|+.++++.|++. +.+++.+|..|.||||+|+..++.+++++|.+++   
T Consensus        85 i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~-g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~---  159 (223)
T d1uoha_          85 IVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK---  159 (223)
T ss_dssp             HHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---
T ss_pred             hhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCccchhhhhcCCcchhhhhcccc---
Confidence            36778887776 899999999999999999999999998876 6788999999999999999999999999999854   


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHH
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRK  153 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~  153 (344)
                         ..++.+|.+|+||||+|+..|+.+++++|++.| ++++.+|.+|+||+|+|.     . ++.++++.|++
T Consensus       160 ---~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G-ad~~~~d~~g~tpl~~A~-----~-~~~~i~~~Ll~  222 (223)
T d1uoha_         160 ---ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQVAK-----G-GLGLILKRMVE  222 (223)
T ss_dssp             ---CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHCC-----T-THHHHHHHHHC
T ss_pred             ---ceeeeccCCCCceeccccccCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH-----C-CCHHHHhcccC
Confidence               347889999999999999999999999999999 999999999999999985     3 78889988875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.5e-24  Score=184.38  Aligned_cols=156  Identities=15%  Similarity=0.162  Sum_probs=129.3

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcc---cccCCCChHHHHHHHcCCHHHHHHHHhchh
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESIL---QVTIRKETALHVAAKYDRLEVLETMLGWLR   78 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~---~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~   78 (344)
                      |+.||+.++..++.+|.+|+||||+|+..|+.++++.|++. +..++   ..+..|.+++|+++..+..++++.++..+.
T Consensus        16 v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (229)
T d1ixva_          16 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL   94 (229)
T ss_dssp             HHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTT-CTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSS
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhh-hccccccccccccccccccccccccccccccccccccc
Confidence            67889988888999999999999999999999999888876 44443   456678888888888888777777765543


Q ss_pred             ccC-----------------------------ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCC
Q 043149           79 YVN-----------------------------MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNT  129 (344)
Q Consensus        79 ~~~-----------------------------~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~T  129 (344)
                      ...                             .+...+.+|.+|+||||+|+..|+.+++++|++.++.+++.+|.+|+|
T Consensus        95 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~T  174 (229)
T d1ixva_          95 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT  174 (229)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCC
Confidence            221                             334567789999999999999999999999999887889999999999


Q ss_pred             HHHHHhhhcCCCccHHHHHHHHHH-cCCCCCCCCC
Q 043149          130 AMDMVKFHLQTKPEFEELKSMVRK-AGGRERSSLA  163 (344)
Q Consensus       130 pl~~a~~~~~~~~~~~~i~~~L~~-~ga~~~~~~~  163 (344)
                      |||+|+     ..++.+++++|++ .|++++....
T Consensus       175 pLh~A~-----~~~~~~~v~~Ll~~~gad~~~~d~  204 (229)
T d1ixva_         175 PLFHAL-----AEGHGDAAVLLVEKYGAEYDLVDN  204 (229)
T ss_dssp             HHHHHH-----HTTCHHHHHHHHHHHCCCSCCCCT
T ss_pred             chhhhc-----ccccHHHHHHHHHhcCCCCCCcCC
Confidence            999999     8889999999986 5999887543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.5e-24  Score=173.94  Aligned_cols=139  Identities=17%  Similarity=0.239  Sum_probs=126.2

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.||+.++..++.+|..|+||||+|+ .|+.++++.|++. +.+++..+..|.+|++.++..++.++++++++++.  
T Consensus        17 ~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~--   92 (156)
T d1bd8a_          17 EVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA--   92 (156)
T ss_dssp             HHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--
T ss_pred             HHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccc-ccccccccccccccccccccccccccccccccccc--
Confidence            3788999888789999999999999887 5899999999986 66788899999999999999999999999999654  


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                          .+|.+|.+|+||||+|+..|+.+++++|+ .+ ++++.+|.+|+||||+|+     ..++.+++++|+++
T Consensus        93 ----~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~-~~~~~~d~~G~TpL~~A~-----~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          93 ----DVNVPDGTGALPIHLAVQEGHTAVVSFLA-AE-SDLHRRDARGLTPLELAL-----QRGAQDLVDILQGH  155 (156)
T ss_dssp             ----CSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TT-SCTTCCCTTSCCHHHHHH-----HSCCHHHHHHHHTT
T ss_pred             ----ccccccCCCCeeecccccccccccccccc-cc-ccccccCCCCCCHHHHHH-----HcCCHHHHHHHHhh
Confidence                36789999999999999999999999887 56 899999999999999999     89999999999976

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.5e-24  Score=181.32  Aligned_cols=138  Identities=17%  Similarity=0.202  Sum_probs=116.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH---hCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC-------------
Q 043149           18 REGVTPLHYVAEKGNVDLLCKFLA---ACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN-------------   81 (344)
Q Consensus        18 ~~G~TpLh~Aa~~G~~~~v~~LL~---~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~-------------   81 (344)
                      .+|+||||+||..|+.++++.|+.   +.+.+++.+|..|+||||+|+.+|+.+++++|++++++.+             
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            379999999999999999998875   4678899999999999999999999999999999876553             


Q ss_pred             ----------------------------------------------------ccccccccCCCCCcHHHHHHHCCcHHHH
Q 043149           82 ----------------------------------------------------MDDILNWKNDEGNTLLHISISRSHIQIV  109 (344)
Q Consensus        82 ----------------------------------------------------~~~~ln~~d~~G~TpLH~Aa~~g~~~~v  109 (344)
                                                                          ........+..|.++||.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence                                                                1111233455788899999999999999


Q ss_pred             HHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149          110 RLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus       110 ~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      +.+++.+ .+.+.+|..|.||+++|+     ..++.+++++|+++|++++..
T Consensus       161 ~~~~~~~-~~~~~~d~~g~t~L~~A~-----~~g~~~~v~~Ll~~Gad~n~~  206 (228)
T d1k1aa_         161 QLLLQHG-ANVNAQMYSGSSALHSAS-----GRGLLPLVRTLVRSGADSSLK  206 (228)
T ss_dssp             HHHHHTT-CCTTCBCTTSCBHHHHHH-----HHTCHHHHHHHHHTTCCTTCC
T ss_pred             hhhhhhc-cccccccccCcchHHHHH-----HcCCHHHHHHHHHCCCCCCCC
Confidence            9999888 888888999999999998     788889999999999888764

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=6.1e-24  Score=181.47  Aligned_cols=151  Identities=19%  Similarity=0.209  Sum_probs=85.3

Q ss_pred             CHHHHHhcCCccccc-cCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhc
Q 043149            1 MVLRLIDFDRNLVRV-QGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRY   79 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~-~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~   79 (344)
                      ||+.||+++++ ++. .|++|.||||+||+.|+.++++.|+.. +..++.++..+.++++.++..++.+...........
T Consensus         4 ~v~~Ll~~g~d-in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~-g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           4 VISDLLAQGAE-LNATMDKTGETSLHLAARFARADAAKRLLDA-GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHCCCC-cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhh-cccccccccccccccccccccccccccccccccccc
Confidence            58899999998 665 699999999999999999999988875 444455555555555555444444433333221110


Q ss_pred             cC----------------------------ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHH
Q 043149           80 VN----------------------------MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAM  131 (344)
Q Consensus        80 ~~----------------------------~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl  131 (344)
                      ..                            .+..++.+|..|+||||.++..+..++++.+++.+ .+++.+|..|.|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~-~~~~~~d~~g~TpL  160 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHH-ANRDAQDDKDETPL  160 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccc-cccccccccccccc
Confidence            00                            22223444444444444444444444444444444 44444444444444


Q ss_pred             HHHhhhcCCCccHHHHHHHHHHcCCCCC
Q 043149          132 DMVKFHLQTKPEFEELKSMVRKAGGRER  159 (344)
Q Consensus       132 ~~a~~~~~~~~~~~~i~~~L~~~ga~~~  159 (344)
                      |+|+     ..++.+++++|+++|++++
T Consensus       161 ~~A~-----~~g~~~~v~~Ll~~gad~n  183 (209)
T d1ot8a_         161 FLAA-----REGSYEASKALLDNFANRE  183 (209)
T ss_dssp             HHHH-----HTTCHHHHHHHHHTTCCTT
T ss_pred             chhc-----cccHHHHHHHHHHCCCCCC
Confidence            4444     4444444444444444443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.9e-23  Score=180.87  Aligned_cols=134  Identities=16%  Similarity=0.238  Sum_probs=116.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC-------------------
Q 043149           21 VTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN-------------------   81 (344)
Q Consensus        21 ~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~-------------------   81 (344)
                      +||||+||..|+.++++.||...+..++.+|.+|+||||+|+.+|+.+++++|+++|++++                   
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            5899999999999999999999899999999999999999999999999999999887653                   


Q ss_pred             -------------ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHH
Q 043149           82 -------------MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELK  148 (344)
Q Consensus        82 -------------~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~  148 (344)
                                   ........+..+.|+++.++..++.+++++|+..+ .+.+.+|..|+||+|+|+     ..++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~t~l~~a~-----~~~~~~~~  154 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAA-----SVGSLKLI  154 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHH-----HHTCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhc-ccccccCCCCCCccchhh-----hccccccc
Confidence                         11223445566778888888888889999999988 889999999999999999     88899999


Q ss_pred             HHHHHcCC-CCCC
Q 043149          149 SMVRKAGG-RERS  160 (344)
Q Consensus       149 ~~L~~~ga-~~~~  160 (344)
                      ++|++.|. +++.
T Consensus       155 ~~Ll~~~~~~in~  167 (229)
T d1ixva_         155 ELLCGLGKSAVNW  167 (229)
T ss_dssp             HHHHTTTCCCSCC
T ss_pred             ccccccccccccc
Confidence            99999874 4444

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.3e-23  Score=168.31  Aligned_cols=141  Identities=26%  Similarity=0.358  Sum_probs=128.6

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.||+.+.+ ++.+|.+|.||||+|+ .|+.++++.|+++ +.+++.++..|.++|+.++..++.+.++.|++++.  
T Consensus        16 ~v~~Ll~~g~d-~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~-~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~--   90 (156)
T d1ihba_          16 QLTSLLQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA--   90 (156)
T ss_dssp             HHHHHTTSCCC-TTCCCTTSCCHHHHCC-SSCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--
T ss_pred             HHHHHHHCCCC-cCccCCcccccccccc-ccccccccccccc-ccccccccccCcccccccccccccccccccccccc--
Confidence            47889998887 8999999999999886 7999999888876 67788999999999999999999999999998653  


Q ss_pred             CccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcC
Q 043149           81 NMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAG  155 (344)
Q Consensus        81 ~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~g  155 (344)
                          .++..|..|.+|||+|+..++.+++++|+++++.+.+.+|.+|+||||+|+     ..++.+++++|+++|
T Consensus        91 ----~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~-----~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          91 ----DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR-----LYGRNEVVSLMQANG  156 (156)
T ss_dssp             ----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTC
T ss_pred             ----cccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHH-----HcCCHHHHHHHHhcC
Confidence                367789999999999999999999999999996699999999999999999     889999999999987

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.5e-24  Score=167.16  Aligned_cols=122  Identities=13%  Similarity=0.128  Sum_probs=110.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCC-cHH
Q 043149           19 EGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGN-TLL   97 (344)
Q Consensus        19 ~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~-TpL   97 (344)
                      .+.++||+||..|+.++++.|++. +.+++.+|..|+||||+|+ .|+.+++++|+++|.+      ++.+|..|. |||
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~-gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~------~~~~~~~~~~~~L   73 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE------PNCADPATLTRPV   73 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC------CCCCCTTTCCCHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHc-CCccccccccccccccccc-cccccccccccccccc------ccccccccccccc
Confidence            467999999999999999999976 7889999999999999775 7999999999996654      677887765 699


Q ss_pred             HHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149           98 HISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus        98 H~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                      |+|++.|+.+++++|+++| ++++.+|.+|+||+|+|+     ..++.+++++|++.
T Consensus        74 ~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~G~T~l~~A~-----~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          74 HDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAE-----ELGHRDVARYLRAA  124 (125)
T ss_dssp             HHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHH-----HHTCHHHHHHHSSC
T ss_pred             ccccccccccccccccccc-cccccccCCCCCHHHHHH-----HcCCHHHHHHHHhc
Confidence            9999999999999999999 999999999999999999     88999999998753

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=8.1e-24  Score=165.61  Aligned_cols=107  Identities=20%  Similarity=0.255  Sum_probs=100.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHH
Q 043149           21 VTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHIS  100 (344)
Q Consensus        21 ~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~A  100 (344)
                      .|||++|++.|+.++++.|++. +.+++.+|.+|+||||+|+.+|+.+++++|+++|.      .++.+|.+|+||||+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~------din~~d~~g~tpLh~A   75 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA------DINAPDKHHITPLLSA   75 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC------TTTCCSSSCSCHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhccccccccccccccccccccccccccccccccc------eeeecccccccchhhh
Confidence            4899999999999999999986 78899999999999999999999999999999654      4788999999999999


Q ss_pred             HHCCcHHHHHHHHhccCcccccccCCCCCHHHHHh
Q 043149          101 ISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus       101 a~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~  135 (344)
                      +..|+.+++++|+++| ++++.+|.+|+||+|+|.
T Consensus        76 ~~~~~~~~v~~Ll~~G-ad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          76 VYEGHVSCVKLLLSKG-ADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HTTTCCHHHHHHHTTC-CCSSSSSSSTCCCCCTCS
T ss_pred             hhcCchhhhhhhhccc-ccceeeCCCCCCHHHHHh
Confidence            9999999999999999 999999999999999886

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-23  Score=166.38  Aligned_cols=123  Identities=18%  Similarity=0.171  Sum_probs=109.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHH
Q 043149           22 TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISI  101 (344)
Q Consensus        22 TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa  101 (344)
                      ++||.||..|+.++|+.|+++ +.+++.+|.+|+||||+|+..|+.+++++|++++.      .++.+|.+|+||||+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~------~~~~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV------NVNAADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC------CTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCcccccccccccccccccccccccccccccccc------ccccccccCcccccccc
Confidence            689999999999999998876 67899999999999999999999999999999654      47889999999999999


Q ss_pred             HCCcHHHHHHHHhccCcccccccC-CCCCHHHHHhhhcCCCccHHHHHHHHHHcC
Q 043149          102 SRSHIQIVRLIVKRVRDQINARNS-KDNTAMDMVKFHLQTKPEFEELKSMVRKAG  155 (344)
Q Consensus       102 ~~g~~~~v~~Ll~~~~~~~~~~n~-~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~g  155 (344)
                      ..|+.+++++|+++| ++++.++. .|+||++++...   ..++.+++++|+..+
T Consensus        76 ~~g~~~~v~~Ll~~g-a~v~~~~~~~~~~~~~~~~a~---~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          76 SCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEM---EEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSS---STTCCCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHH---HcChHHHHHHHHhHH
Confidence            999999999999999 99998875 589998887522   566789999998753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.8e-23  Score=178.81  Aligned_cols=145  Identities=23%  Similarity=0.269  Sum_probs=112.2

Q ss_pred             CCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccc
Q 043149            9 DRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNW   88 (344)
Q Consensus         9 ~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~   88 (344)
                      ++..++.+|.+|+||||+|+..|+.++++.|++. +.+++..|..|+||||.|+.+++.++++.|++.+.........+.
T Consensus        28 ~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  106 (221)
T d1iknd_          28 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA  106 (221)
T ss_dssp             -CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC
T ss_pred             CCCCcccCCCCCCccccccccccccccccccccc-cccccccccccccccccccccccccccchhhhhcccccccccccc
Confidence            4445899999999999999999999999888775 778899999999999999999999999999987665444444555


Q ss_pred             cCCCCCcHHHHHHHCCcHHHHHHHHhccCccccccc-CCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           89 KNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARN-SKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        89 ~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n-~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      ...+|.||||.|+..++.+.+++|+..+ ..++.++ .+|.||||+|+     ..++.+++++|+++|++++.
T Consensus       107 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~G~T~L~~A~-----~~g~~~~v~~Ll~~gad~~~  173 (221)
T d1iknd_         107 TNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAV-----DLQNPDLVSLLLKCGADVNR  173 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHH-----HTTCHHHHHHHHTTTCCSCC
T ss_pred             cccccchhhhHHhhcCChhheeeecccC-cccccccccCCCCcccccc-----ccccHHHHHHHHhcCCcccc
Confidence            5566777777777777777777777766 5555543 45777777777     66677777777777777665

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.88  E-value=1.1e-22  Score=180.55  Aligned_cols=150  Identities=17%  Similarity=0.167  Sum_probs=102.3

Q ss_pred             HHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc---
Q 043149            4 RLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV---   80 (344)
Q Consensus         4 ~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~---   80 (344)
                      .+++.|.+ ++.+|.+|+||||+|+..|+.++++.|++. +.+++.+|.+|+||||+|+..++.++++.+...+...   
T Consensus        59 ~~l~~Gad-vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~  136 (277)
T d2fo1e1          59 ECIAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI  136 (277)
T ss_dssp             HHHHTCCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT
T ss_pred             HHHHcCCC-ccccCCCCCeeecccccccccccccccccc-ccccccccccccccccchhhhcchhhhhhhhhcccccccc
Confidence            34555555 889999999999999999999999988886 7889999999999999999999999999887643210   


Q ss_pred             C--------------------------------------ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCccccc
Q 043149           81 N--------------------------------------MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINA  122 (344)
Q Consensus        81 ~--------------------------------------~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~  122 (344)
                      .                                      .....+..+.+|.||||+++..++.++++.++...+.+.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~  216 (277)
T d2fo1e1         137 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK  216 (277)
T ss_dssp             SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred             cccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccc
Confidence            0                                      11112334445555555555555555555544433355555


Q ss_pred             ccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          123 RNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       123 ~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      +|..|+||||+|+     ..++.+++++|+++|++++.
T Consensus       217 ~d~~g~tpL~~A~-----~~g~~~iv~~Ll~~gadin~  249 (277)
T d2fo1e1         217 QDEDGKTPIMLAA-----QEGRIEVVMYLIQQGASVEA  249 (277)
T ss_dssp             CCTTCCCHHHHHH-----HHTCHHHHHHHHHTTCCSSC
T ss_pred             cCCCCCCHHHHHH-----HcCCHHHHHHHHHCcCCCCC
Confidence            5555556665555     55555555555555555544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.88  E-value=1.6e-22  Score=181.43  Aligned_cols=153  Identities=19%  Similarity=0.204  Sum_probs=133.5

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.||+.+.+ ++.+|.+|.||||+|+..|+.++++.|++. +......+..+.+|||.|+..++.++++.|++++...
T Consensus        55 ~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~  132 (291)
T d1s70b_          55 EVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV  132 (291)
T ss_dssp             HHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHCCCC-CCccCCCCCcHHHHHHhcCCceeeeeeccc-ccccccccccccccccccccccccchhhcccccCccc
Confidence            37889988877 899999999999999999999999888887 5556777888999999999999999999999876543


Q ss_pred             C------------------------------------------------------ccccccccCCCCCcHHHHHHHCCcH
Q 043149           81 N------------------------------------------------------MDDILNWKNDEGNTLLHISISRSHI  106 (344)
Q Consensus        81 ~------------------------------------------------------~~~~ln~~d~~G~TpLH~Aa~~g~~  106 (344)
                      .                                                      ........+..|.||||.|+..|+.
T Consensus       133 ~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~  212 (291)
T d1s70b_         133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT  212 (291)
T ss_dssp             TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             ccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCCh
Confidence            2                                                      1122344678899999999999999


Q ss_pred             HHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149          107 QIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus       107 ~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                      ++++.|++.| +++|.+|..|+||||+|+     ..++.+++++|+++|++++..
T Consensus       213 ~~~~~Ll~~g-~din~~~~~g~TpL~~A~-----~~g~~~iv~lLl~~Gadv~~~  261 (291)
T d1s70b_         213 EVLKLLIQAR-YDVNIKDYDGWTPLHAAA-----HWGKEEACRILVENLCDMEAV  261 (291)
T ss_dssp             HHHHHHHTTT-CCTTCCCTTCCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCC
T ss_pred             hhhcccccce-ecccccccCCCCHHHHHH-----HcCCHHHHHHHHHCCCCCCCc
Confidence            9999999999 999999999999999999     889999999999999998873

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.5e-22  Score=179.00  Aligned_cols=154  Identities=23%  Similarity=0.320  Sum_probs=125.8

Q ss_pred             CHHHHHhcCCcccccc-CCCCCcHHHHHHHcCCHHHHHHHHHhCCCC---------------------------------
Q 043149            1 MVLRLIDFDRNLVRVQ-GREGVTPLHYVAEKGNVDLLCKFLAACPES---------------------------------   46 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~-d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~---------------------------------   46 (344)
                      +|+.||+.+.+ ++.+ +..|+||||+|+..|+.++++.|++.....                                 
T Consensus        20 ~vk~Ll~~G~d-in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (285)
T d1wdya_          20 LVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV   98 (285)
T ss_dssp             HHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHCCCC-cCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccc
Confidence            47889998887 5544 467999999999999999998776542210                                 


Q ss_pred             ------------------------------------------cccccCCCChHHHHHHHcCCHHHHHHHHhc-hhccC--
Q 043149           47 ------------------------------------------ILQVTIRKETALHVAAKYDRLEVLETMLGW-LRYVN--   81 (344)
Q Consensus        47 ------------------------------------------~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~--   81 (344)
                                                                ....+..|.||||+|+++|+.+++++|+++ +.+++  
T Consensus        99 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~  178 (285)
T d1wdya_          99 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC  178 (285)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC
T ss_pred             cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccc
Confidence                                                      001123588999999999999999999864 33222  


Q ss_pred             -----------------------------ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHH
Q 043149           82 -----------------------------MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD  132 (344)
Q Consensus        82 -----------------------------~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~  132 (344)
                                                   .+..++.+|.+|.||||.|+..|+.+++++|++..++++|.+|.+|.||||
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~  258 (285)
T d1wdya_         179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL  258 (285)
T ss_dssp             CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHH
T ss_pred             cCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence                                         234567789999999999999999999999998655999999999999999


Q ss_pred             HHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          133 MVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       133 ~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      +|+     ..++.+++++|+++||+++.
T Consensus       259 ~A~-----~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         259 LAV-----ELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHH-----HTTCHHHHHHHHHHSSCSCC
T ss_pred             HHH-----HcCCHHHHHHHHHCCCCCCc
Confidence            999     88999999999999999987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=9.7e-22  Score=159.64  Aligned_cols=135  Identities=24%  Similarity=0.243  Sum_probs=99.9

Q ss_pred             HHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccC
Q 043149            2 VLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVN   81 (344)
Q Consensus         2 v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~   81 (344)
                      |+.||+.+++ .+ .|..|+||||+|+..++.++++.++.. +......+..+.+++|.++...+.++++++.+++    
T Consensus        18 v~~LL~~ga~-~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----   90 (153)
T d1awcb_          18 VRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG----   90 (153)
T ss_dssp             HHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTT----
T ss_pred             HHHHHHcCCC-cc-cccCCCccccccccccccccccccccc-cccccccccccccccccccccccceeeecccccC----
Confidence            5566666554 22 466666666666666666666555544 3333444555666666666666666666666543    


Q ss_pred             ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHH
Q 043149           82 MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMV  151 (344)
Q Consensus        82 ~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L  151 (344)
                        ...+.+|.+|+||||+|+..|+.+++++|++.| ++++.+|.+|.||+|+|+     ..++.+++++|
T Consensus        91 --~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g-ad~~~~d~~g~Tpl~~A~-----~~g~~eiv~lL  152 (153)
T d1awcb_          91 --ADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISI-----DNGNEDLAEIL  152 (153)
T ss_dssp             --CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHH
T ss_pred             --CccccccccCchHHHhhhhcchhheeeeccccc-cCCcccCCCCCCHHHHHH-----HcCCHHHHHhC
Confidence              346778999999999999999999999999999 999999999999999999     88999999877

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.6e-21  Score=171.42  Aligned_cols=136  Identities=20%  Similarity=0.170  Sum_probs=118.1

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHhC--CCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCC
Q 043149           14 RVQGREGVTPLHYVAEKGNVDLLCKFLAAC--PESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKND   91 (344)
Q Consensus        14 ~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~--~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~   91 (344)
                      ...|++|+||||+||++|+.++++.|++..  +..++..|..|+||||+|+.+|+.+++++|+++|.      .++.+|.
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga------~i~~~d~   76 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA------GVLVAER   76 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CSSCCCT
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccc------ccccccc
Confidence            346899999999999999999999998762  33467788999999999999999999999999654      4778999


Q ss_pred             CCCcHHHHHHHCCcHHHHHHHHhcc----------------------------------------------CcccccccC
Q 043149           92 EGNTLLHISISRSHIQIVRLIVKRV----------------------------------------------RDQINARNS  125 (344)
Q Consensus        92 ~G~TpLH~Aa~~g~~~~v~~Ll~~~----------------------------------------------~~~~~~~n~  125 (344)
                      +|+||||+|+..++.+++++|++..                                              ..+++.+|.
T Consensus        77 ~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~  156 (255)
T d1oy3d_          77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY  156 (255)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCT
T ss_pred             ccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccc
Confidence            9999999999999999999987542                                              123567789


Q ss_pred             CCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          126 KDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       126 ~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      .|.||||+|+     ..++.+++++|++.|++...
T Consensus       157 ~g~TpLh~A~-----~~~~~~~v~~Ll~~~~~~~~  186 (255)
T d1oy3d_         157 DGHTPLHVAV-----IHKDAEMVRLLRDAGADLNK  186 (255)
T ss_dssp             TSCCHHHHHH-----HTTCHHHHHHHHHHTCCTTC
T ss_pred             cCcccccccc-----cccccccccchhcccccccc
Confidence            9999999999     88899999999999998876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.1e-21  Score=177.95  Aligned_cols=134  Identities=20%  Similarity=0.250  Sum_probs=93.8

Q ss_pred             cccc-CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCH-------HHHHHHHhchhccCccc
Q 043149           13 VRVQ-GREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRL-------EVLETMLGWLRYVNMDD   84 (344)
Q Consensus        13 ~~~~-d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~-------~iv~~Ll~~~~~~~~~~   84 (344)
                      ++.+ |.+|+||||+||..|+.++|+.|++. +.+++.+|..|+||||.||..++.       ++++++..         
T Consensus        99 vn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---------  168 (301)
T d1sw6a_          99 LNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---------  168 (301)
T ss_dssp             SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---------
T ss_pred             cCcCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---------
Confidence            4544 89999999999999999999998876 789999999999999999987652       34444322         


Q ss_pred             cccccCCCCCcHHHHHHHCCc----HHH--------HHHHHhccCc----------------------------------
Q 043149           85 ILNWKNDEGNTLLHISISRSH----IQI--------VRLIVKRVRD----------------------------------  118 (344)
Q Consensus        85 ~ln~~d~~G~TpLH~Aa~~g~----~~~--------v~~Ll~~~~~----------------------------------  118 (344)
                      .++..|..|+||||.++..+.    ..+        ++.++..+..                                  
T Consensus       169 ~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (301)
T d1sw6a_         169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII  248 (301)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred             hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHH
Confidence            244567777777776664332    222        2222222211                                  


Q ss_pred             --ccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCC
Q 043149          119 --QINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSS  161 (344)
Q Consensus       119 --~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~  161 (344)
                        .+|.+|.+|+||||+|+     ..++.+++++|+++||+++..
T Consensus       249 ~~~in~~D~~G~TpLh~A~-----~~g~~~iv~~Ll~~GAd~~~~  288 (301)
T d1sw6a_         249 ANMLNAQDSNGDTCLNIAA-----RLGNISIVDALLDYGADPFIA  288 (301)
T ss_dssp             HHTTTCCCTTSCCHHHHHH-----HHCCHHHHHHHHHTTCCTTCC
T ss_pred             hcCccCCCCCCCCHHHHHH-----HcCCHHHHHHHHHCCCCCCCC
Confidence              15777777777777777     677777777777777777654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.6e-21  Score=157.44  Aligned_cols=125  Identities=18%  Similarity=0.235  Sum_probs=107.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCcc------cccCCCChHHHHHHHc---CCHHHHHHHHhchhccCccccccccCCCC
Q 043149           23 PLHYVAEKGNVDLLCKFLAACPESIL------QVTIRKETALHVAAKY---DRLEVLETMLGWLRYVNMDDILNWKNDEG   93 (344)
Q Consensus        23 pLh~Aa~~G~~~~v~~LL~~~~~~~~------~~d~~G~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G   93 (344)
                      .|+.|++.+++..+..++..+ .++.      ..+..|+||||+|++.   ++.+++++|+++|.      .+|.+|.+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga------din~~d~~g   81 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADG-VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG------NLDKQTGKG   81 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS------CTTCCCTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHcC-CCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCC------Chhhhhhhh
Confidence            455788999999998888763 3322      2367899999999985   67899999999654      478899999


Q ss_pred             CcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149           94 NTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus        94 ~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      +||||+|+..|+.+++++|+++| ++++.+|.+|+||+|+|+     ..++.+++++|++.++....
T Consensus        82 ~TpLh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~-----~~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          82 STALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAK-----RLKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHHTTCCC
T ss_pred             ccccccccccccccccccccccC-ccccccCCCCCCHHHHHH-----HcCCHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999 999999999999999999     88999999999998766544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.83  E-value=4.6e-21  Score=170.01  Aligned_cols=137  Identities=14%  Similarity=0.181  Sum_probs=108.7

Q ss_pred             ccccC-CCCCcHHHHHHHcCCHHHHHHHHH-------hCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccc
Q 043149           13 VRVQG-REGVTPLHYVAEKGNVDLLCKFLA-------ACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDD   84 (344)
Q Consensus        13 ~~~~d-~~G~TpLh~Aa~~G~~~~v~~LL~-------~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~   84 (344)
                      ++..| ++|+||||+||..|+.++++.|+.       ..|.+++.+|.+|+||||+|+++|+.+++++|+++|++     
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad-----   99 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-----   99 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccc-----
Confidence            33444 569999999999999999987753       34788999999999999999999999999999997654     


Q ss_pred             cccccCCCCCcHHHHHHHCCcHHHHHHHHhcc----------------------------------------------Cc
Q 043149           85 ILNWKNDEGNTLLHISISRSHIQIVRLIVKRV----------------------------------------------RD  118 (344)
Q Consensus        85 ~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~----------------------------------------------~~  118 (344)
                       ++.+|.+|+||||+|+..++.++++.+....                                              ..
T Consensus       100 -~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (277)
T d2fo1e1         100 -PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA  178 (277)
T ss_dssp             -SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred             -cccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccc
Confidence             6778999999999999999988887775432                                              01


Q ss_pred             ccccccCCCCCHHHHHhhhcCCCccHHHHHHH-HHHcCCCCCC
Q 043149          119 QINARNSKDNTAMDMVKFHLQTKPEFEELKSM-VRKAGGRERS  160 (344)
Q Consensus       119 ~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~-L~~~ga~~~~  160 (344)
                      ..+..+..|.||++.++     ..++.++.+. +...+.+...
T Consensus       179 ~~~~~~~~g~t~L~~~~-----~~~~~~~~~~~l~~~~~~~~~  216 (277)
T d2fo1e1         179 RKDSEKYKGRTALHYAA-----QVSNMPIVKYLVGEKGSNKDK  216 (277)
T ss_dssp             GTSSSSCCCCCTHHHHH-----SSCCHHHHHHHHHHSCCCTTC
T ss_pred             cccccccCCCCcccccc-----ccccccccccccccccccccc
Confidence            12345667899999998     7777888775 4456665554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.9e-20  Score=173.80  Aligned_cols=130  Identities=24%  Similarity=0.340  Sum_probs=105.5

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCC
Q 043149           12 LVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKND   91 (344)
Q Consensus        12 ~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~   91 (344)
                      ..+..|..|.||||.|+..|+.++++.|++. +.+++..+..+.||||.++..++.++++++++.|      ..+|.+|.
T Consensus       256 ~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~-g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g------~~in~~d~  328 (408)
T d1n11a_         256 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ------ADVNAKTK  328 (408)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT------CCTTCCCT
T ss_pred             ccccccCCCCChhhhhhhcCcHHHHHHHHHC-CCccccccccccccchhhcccCcceeeeeecccc------ccccccCC
Confidence            3666777788888888888888888777765 5667777777788888888888888888887754      44788899


Q ss_pred             CCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHc
Q 043149           92 EGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKA  154 (344)
Q Consensus        92 ~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~  154 (344)
                      +|+||||+|++.|+.+++++|+++| +++|.+|.+|+||||+|+     ..++.+++++|...
T Consensus       329 ~G~T~Lh~A~~~g~~~iv~~Ll~~G-Ad~n~~d~~G~t~L~~A~-----~~~~~~iv~~L~~~  385 (408)
T d1n11a_         329 LGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAK-----RLGYISVTDVLKVV  385 (408)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHH-----HTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHHH
Confidence            9999999999999999999999998 999999999999999999     77888888876543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-19  Score=169.52  Aligned_cols=152  Identities=19%  Similarity=0.258  Sum_probs=136.6

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhcc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYV   80 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~   80 (344)
                      +|+.||+.+.+ ++..|..|+||||+||..|+.++++.||++ +.+++..|.+|+||||+|+.+|+.+++++|++...+.
T Consensus        15 ~v~~Ll~~g~~-in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~   92 (408)
T d1n11a_          15 IVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP   92 (408)
T ss_dssp             HHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred             HHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            47889998876 899999999999999999999999999987 7789999999999999999999999999999765543


Q ss_pred             C---------------------------ccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHH
Q 043149           81 N---------------------------MDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDM  133 (344)
Q Consensus        81 ~---------------------------~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~  133 (344)
                      .                           .....+..|.+|.++++.|+..++.++++.|++++ .+++..+..|.+||+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~-~~~~~~~~~~~~~L~~  171 (408)
T d1n11a_          93 NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHV  171 (408)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSCCCHHHH
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCcCchHHHH
Confidence            2                           22445667889999999999999999999999999 9999999999999999


Q ss_pred             HhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          134 VKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       134 a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      |+     ..++.+++++|+++|++++.
T Consensus       172 A~-----~~~~~~~~~~Ll~~g~~~~~  193 (408)
T d1n11a_         172 AV-----HHNNLDIVKLLLPRGGSPHS  193 (408)
T ss_dssp             HH-----HTTCHHHHHHHGGGTCCSCC
T ss_pred             HH-----HcCCHHHHHHHHhcCCcccc
Confidence            99     88889999999999998876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.81  E-value=5.7e-22  Score=183.47  Aligned_cols=135  Identities=10%  Similarity=0.045  Sum_probs=112.1

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHH--HHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccC
Q 043149           13 VRVQGREGVTPLHYVAEKGNVDLLCKF--LAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKN   90 (344)
Q Consensus        13 ~~~~d~~G~TpLh~Aa~~G~~~~v~~L--L~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d   90 (344)
                      ++.+|.+|.||||+||++|+.++++.+  |...+..++.+|.+|+||||+||++|+.++|++|+++|++      ++..|
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~------~~~~~  156 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT------EIMAM  156 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT------THHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------ccccc
Confidence            356788999999999999999887653  5556889999999999999999999999999999997654      44443


Q ss_pred             --CCCCcHHHHHHHCCcHHHHHHHHhccCcc---cccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCC
Q 043149           91 --DEGNTLLHISISRSHIQIVRLIVKRVRDQ---INARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRER  159 (344)
Q Consensus        91 --~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~---~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~  159 (344)
                        .+|+||||+|+..|+.+++++|++.+ .+   .+..+.+|.||++.|+     ..|+.+++++|++.|++.+
T Consensus       157 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~-~~~~~~~~~~~~~~t~l~~A~-----~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         157 IQAENYHAFRLAAENGHLHVLNRLCELA-PTEATAMIQAENYYAFRWAAV-----GRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HSHHHHHHHHHHHHTTCHHHHHHHHHSC-GGGHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHTTSHHHHH
T ss_pred             cccCCCChhHHHHHHhhHHHHHHHHHcC-CcccccccccCCCcchhhHHh-----hcCHHHHHHHHHhCCCCcc
Confidence              56999999999999999999999987 43   3455677888999999     8899999999999887654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=3.4e-19  Score=145.47  Aligned_cols=94  Identities=20%  Similarity=0.227  Sum_probs=85.7

Q ss_pred             cCCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCC
Q 043149           16 QGREGVTPLHYVAEK---GNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDE   92 (344)
Q Consensus        16 ~d~~G~TpLh~Aa~~---G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~   92 (344)
                      .+..|+||||+|+..   |+.++++.|++. +.+++.+|.+|+||||+|++.|+.+++++|+++|++      ++.+|.+
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad------~~~~d~~  113 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS------IEIANES  113 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTT
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhhhhhhccccccccccccccccccccccCcc------ccccCCC
Confidence            377899999999974   788999988887 678999999999999999999999999999996544      7789999


Q ss_pred             CCcHHHHHHHCCcHHHHHHHHhcc
Q 043149           93 GNTLLHISISRSHIQIVRLIVKRV  116 (344)
Q Consensus        93 G~TpLH~Aa~~g~~~~v~~Ll~~~  116 (344)
                      |.||||+|++.|+.+++++|++.+
T Consensus       114 g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1         114 GETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhC
Confidence            999999999999999999999876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=3.3e-19  Score=144.41  Aligned_cols=127  Identities=21%  Similarity=0.246  Sum_probs=114.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHH
Q 043149           20 GVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHI   99 (344)
Q Consensus        20 G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~   99 (344)
                      ..||||.||+.|+.++|+.||+.+ .+.+ .|..|+||||+|+..++.++++.++....      .....+..+.+++|.
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~g-a~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~   73 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANG-APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV------SRDARTKVDRTPLHM   73 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHT-CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTC------CTTCCCTTCCCHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcC-CCcc-cccCCCccccccccccccccccccccccc------ccccccccccccccc
Confidence            349999999999999999999984 4554 68999999999999999999999987533      244567788999999


Q ss_pred             HHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          100 SISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       100 Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      ++...+.+.++++..++ ++.+.+|.+|.||||+|+     ..++.+++++|++.|++++.
T Consensus        74 ~~~~~~~~~~~~l~~~~-~~~~~~~~~g~T~L~~A~-----~~g~~~iv~~ll~~gad~~~  128 (153)
T d1awcb_          74 AASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWAT-----EHNHQEVVELLIKYGADVHT  128 (153)
T ss_dssp             HHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTC
T ss_pred             ccccccceeeecccccC-CccccccccCchHHHhhh-----hcchhheeeeccccccCCcc
Confidence            99999999999999999 999999999999999999     88999999999999999886

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2e-19  Score=146.81  Aligned_cols=125  Identities=14%  Similarity=0.159  Sum_probs=113.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHH
Q 043149           22 TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISI  101 (344)
Q Consensus        22 TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa  101 (344)
                      ..||.||..|+.++|++||...+.+++..|..|+||||+|+ +++.+++++|++.+.+      ++..+.+|.+|++.++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~------~~~~~~~~~~~l~~~~   76 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS------PNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccc------cccccccccccccccc
Confidence            45999999999999999999889999999999999999987 5889999999986543      6778899999999999


Q ss_pred             HCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          102 SRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       102 ~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      ..++.++++.+++++ +++|.+|..|.||||+|+     ..++.+++++|+ .|++++.
T Consensus        77 ~~~~~~~~~~~l~~~-~~~n~~~~~~~t~L~~A~-----~~~~~~i~~~L~-~~~~~~~  128 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAV-----QEGHTAVVSFLA-AESDLHR  128 (156)
T ss_dssp             HTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHH-----HHTCHHHHHHHH-TTSCTTC
T ss_pred             ccccccccccccccc-cccccccCCCCeeecccc-----cccccccccccc-ccccccc
Confidence            999999999999999 999999999999999999     888999999887 6777665

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.6e-19  Score=144.65  Aligned_cols=121  Identities=15%  Similarity=0.192  Sum_probs=112.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHH
Q 043149           22 TPLHYVAEKGNVDLLCKFLAACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISI  101 (344)
Q Consensus        22 TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa  101 (344)
                      +|||+||..|+.++|+.|++. +.+++.+|.+|+||||+|+ .|+.+++++|++.+.      .++.++.+|.++++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a------~~~~~~~~~~~~l~~~~   74 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGA------NPDLKDRTGFAVIHDAA   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCccCCcccccccccc-ccccccccccccccc------ccccccccCcccccccc
Confidence            899999999999999998886 7889999999999999886 789999999999654      36788999999999999


Q ss_pred             HCCcHHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCC
Q 043149          102 SRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGG  156 (344)
Q Consensus       102 ~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga  156 (344)
                      ..++.+.++.++..+ .+++..|..|.+|+++|+     ..++.+++++|+++|+
T Consensus        75 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~a~-----~~~~~~~~~~Ll~~~~  123 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAA-----KEGHLRVVEFLVKHTA  123 (156)
T ss_dssp             HHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHSC
T ss_pred             ccccccccccccccc-cccccccccccccccccc-----cccccccccccccccc
Confidence            999999999999998 899999999999999999     8888999999999887

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.1e-20  Score=159.42  Aligned_cols=133  Identities=17%  Similarity=0.200  Sum_probs=112.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH---hCCCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCc
Q 043149           19 EGVTPLHYVAEKGNVDLLCKFLA---ACPESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNT   95 (344)
Q Consensus        19 ~G~TpLh~Aa~~G~~~~v~~LL~---~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~T   95 (344)
                      +|.||||+|+..|+.+++.+|++   ..+..++..|.+|+||||+|+..|+.+++++|++.|.      .++.+|.+|.|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~------d~~~~d~~g~t   74 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC------DPELRDFRGNT   74 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC------CSCCCCTTCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccc------ccccccccccc
Confidence            69999999999999766655443   3467789999999999999999999999999998654      46778999999


Q ss_pred             HHHHHHHCCcHHHHHHHHhcc-----CcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCCCCCCC
Q 043149           96 LLHISISRSHIQIVRLIVKRV-----RDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGRERSSL  162 (344)
Q Consensus        96 pLH~Aa~~g~~~~v~~Ll~~~-----~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~~~~~~  162 (344)
                      |||.|+..|+.++++.|+..+     ....+....+|.||++.|+     ..++.+++++|.+.|+..+...
T Consensus        75 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~-----~~~~~~~~~~l~~~~~~~~~~~  141 (221)
T d1iknd_          75 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS-----IHGYLGIVELLVSLGADVNAQE  141 (221)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH-----HTTCHHHHHHHHHHTCCTTCCC
T ss_pred             ccccccccccccccchhhhhcccccccccccccccccchhhhHHh-----hcCChhheeeecccCccccccc
Confidence            999999999999999999865     1234556677999999999     7888999999999998886543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-19  Score=142.34  Aligned_cols=105  Identities=15%  Similarity=0.122  Sum_probs=92.9

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccccCCCC-hHHHHHHHcCCHHHHHHHHhchhc
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVTIRKE-TALHVAAKYDRLEVLETMLGWLRY   79 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d~~G~-t~Lh~A~~~g~~~iv~~Ll~~~~~   79 (344)
                      +|+.||+.+.+ ++.+|.+|.||||.|+ .|+.++++.|++. +.+++..|..|. ||||+|+++|+.+++++|+++|.+
T Consensus        18 ~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~   94 (125)
T d1bi7b_          18 EVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR   94 (125)
T ss_dssp             HHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHcCCc-cccccccccccccccc-ccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            47889998776 8999999999999764 7999999888876 677888888765 699999999999999999996644


Q ss_pred             cCccccccccCCCCCcHHHHHHHCCcHHHHHHHHh
Q 043149           80 VNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVK  114 (344)
Q Consensus        80 ~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~  114 (344)
                            ++.+|.+|+||||+|++.|+.+++++|+.
T Consensus        95 ------~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          95 ------LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             ------SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ------cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                  77899999999999999999999999975

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.76  E-value=6.9e-19  Score=157.30  Aligned_cols=127  Identities=28%  Similarity=0.317  Sum_probs=104.5

Q ss_pred             CHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-----------------------------------
Q 043149            1 MVLRLIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPE-----------------------------------   45 (344)
Q Consensus         1 ~v~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~-----------------------------------   45 (344)
                      +|+.|++.+.+ ....+..+.||||.|+..|+.++++.|+..+..                                   
T Consensus        88 iv~~Ll~~~~~-~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~  166 (291)
T d1s70b_          88 MVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI  166 (291)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH
T ss_pred             eeeeecccccc-cccccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccccc
Confidence            35677777665 666777788888888888888877777653210                                   


Q ss_pred             ------------------------CcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHH
Q 043149           46 ------------------------SILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISI  101 (344)
Q Consensus        46 ------------------------~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa  101 (344)
                                              .....+..|.||||.|+..|+.++++.|+++|.      .+|.+|.+|+||||+|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~------din~~~~~g~TpL~~A~  240 (291)
T d1s70b_         167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY------DVNIKDYDGWTPLHAAA  240 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC------CTTCCCTTCCCHHHHHH
T ss_pred             ccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccccee------cccccccCCCCHHHHHH
Confidence                                    112245678999999999999999999999654      47889999999999999


Q ss_pred             HCCcHHHHHHHHhccCcccccccCCCCCHHHHHh
Q 043149          102 SRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus       102 ~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~  135 (344)
                      ..|+.+++++|+++| ++++.+|++|+||||+|+
T Consensus       241 ~~g~~~iv~lLl~~G-adv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         241 HWGKEEACRILVENL-CDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             HTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCC
T ss_pred             HcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHH
Confidence            999999999999999 999999999999999998

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.76  E-value=1.7e-20  Score=173.47  Aligned_cols=110  Identities=15%  Similarity=0.236  Sum_probs=86.9

Q ss_pred             HHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccc--CCCChHHHHHHHcCCHHHHHHHHhchhccCc
Q 043149            5 LIDFDRNLVRVQGREGVTPLHYVAEKGNVDLLCKFLAACPESILQVT--IRKETALHVAAKYDRLEVLETMLGWLRYVNM   82 (344)
Q Consensus         5 LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~~v~~LL~~~~~~~~~~d--~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~   82 (344)
                      |++.+. .++.+|.+|+||||+||+.|+.++|+.|++. +.+++..+  .+|+||||+|+.+|+.++|++|++.++..  
T Consensus       112 L~~~~~-~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~--  187 (346)
T d2ajaa1         112 LLTSDE-IVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE--  187 (346)
T ss_dssp             C--CCS-SCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGG--
T ss_pred             HHhCCC-cccccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcc--
Confidence            445454 5999999999999999999999999999987 55565554  46999999999999999999999976542  


Q ss_pred             cccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCccc
Q 043149           83 DDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQI  120 (344)
Q Consensus        83 ~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~  120 (344)
                       ...+..+.+|.||+|.|+.+|+.+++++|++.| +++
T Consensus       188 -~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g-a~~  223 (346)
T d2ajaa1         188 -ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-VML  223 (346)
T ss_dssp             -HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-HHH
T ss_pred             -cccccccCCCcchhhHHhhcCHHHHHHHHHhCC-CCc
Confidence             223455667788899999999999999999876 443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=3e-19  Score=139.14  Aligned_cols=94  Identities=14%  Similarity=0.161  Sum_probs=88.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHH
Q 043149           55 ETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMV  134 (344)
Q Consensus        55 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a  134 (344)
                      +|||++|+++|+.+++++|++.|.+      ++.+|.+|+||||+|+..|+.+++++|++++ +++|.+|.+|+||||+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d------~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g-~din~~d~~g~tpLh~A   75 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED------VNRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSA   75 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC------CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSS-CTTTCCSSSCSCHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc------ccccccccccccccccccccccccccccccc-ceeeecccccccchhhh
Confidence            4899999999999999999996544      6789999999999999999999999999999 99999999999999999


Q ss_pred             hhhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          135 KFHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       135 ~~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                      +     ..++.+++++|+++|++++.
T Consensus        76 ~-----~~~~~~~v~~Ll~~Gad~~~   96 (118)
T d1myoa_          76 V-----YEGHVSCVKLLLSKGADKTV   96 (118)
T ss_dssp             H-----TTTCCHHHHHHHTTCCCSSS
T ss_pred             h-----hcCchhhhhhhhccccccee
Confidence            9     88999999999999999886

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.6e-18  Score=136.09  Aligned_cols=93  Identities=18%  Similarity=0.220  Sum_probs=87.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHHHHh
Q 043149           56 TALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMDMVK  135 (344)
Q Consensus        56 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~  135 (344)
                      ++||.|+..|+.+++++|+++|.+      +|.+|.+|+||||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d------~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g-~~~~~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD------PSLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC------ccccccccccccccccccccccccccccccc-cccccccccCcccccccc
Confidence            579999999999999999996544      6889999999999999999999999999999 999999999999999999


Q ss_pred             hhcCCCccHHHHHHHHHHcCCCCCC
Q 043149          136 FHLQTKPEFEELKSMVRKAGGRERS  160 (344)
Q Consensus       136 ~~~~~~~~~~~i~~~L~~~ga~~~~  160 (344)
                           ..++.+++++|+++|++++.
T Consensus        76 -----~~g~~~~v~~Ll~~ga~v~~   95 (130)
T d1ycsb1          76 -----SCNNVQVCKFLVESGAAVFA   95 (130)
T ss_dssp             -----HTTCHHHHHHHHHTTCCTTC
T ss_pred             -----hhhHHHHHHHHHHcCCCccc
Confidence                 88999999999999999886

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=4.9e-18  Score=144.18  Aligned_cols=115  Identities=19%  Similarity=0.261  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhCCCCccc-ccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCc------
Q 043149           33 VDLLCKFLAACPESILQ-VTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSH------  105 (344)
Q Consensus        33 ~~~v~~LL~~~~~~~~~-~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~------  105 (344)
                      .|+|+.|++. |.+++. .|.+|.||||+||.+|+.+++++|++.+.+      ++.+|..+.+++|.++..++      
T Consensus         2 ~~~v~~Ll~~-g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~------~n~~~~~~~~~~~~~~~~~~~~~~~~   74 (209)
T d1ot8a_           2 AQVISDLLAQ-GAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD------ANSQDNTGRTPLHAAVAADAMGVFQI   74 (209)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHC-CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc------cccccccccccccccccccccccccc
Confidence            4778778876 555665 477888888888888888888888886544      44455555555555554443      


Q ss_pred             ----------------------------HHHHHHHHhccCcccccccCCCCCHHHHHhhhcCCCccHHHHHHHHHHcCCC
Q 043149          106 ----------------------------IQIVRLIVKRVRDQINARNSKDNTAMDMVKFHLQTKPEFEELKSMVRKAGGR  157 (344)
Q Consensus       106 ----------------------------~~~v~~Ll~~~~~~~~~~n~~G~Tpl~~a~~~~~~~~~~~~i~~~L~~~ga~  157 (344)
                                                  ....+.|...+ .+++.+|..|+||++.++     ..+..++++.+++.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~l~~~~-----~~~~~~~~~~l~~~~~~  148 (209)
T d1ot8a_          75 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD-ADINAADNSGKTALHWAA-----AVNNTEAVNILLMHHAN  148 (209)
T ss_dssp             HHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTT-CCTTCBCTTSCBHHHHHH-----HTTCHHHHHHHHHTTCC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhc-ccccccCCCCCCcchhhc-----ccCcceeeeeecccccc
Confidence                                        34555666666 777888888888888888     67777888888888877


Q ss_pred             CCC
Q 043149          158 ERS  160 (344)
Q Consensus       158 ~~~  160 (344)
                      ++.
T Consensus       149 ~~~  151 (209)
T d1ot8a_         149 RDA  151 (209)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            665

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.8e-16  Score=139.23  Aligned_cols=76  Identities=18%  Similarity=0.205  Sum_probs=67.3

Q ss_pred             CCCcccccCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccc
Q 043149           44 PESILQVTIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINAR  123 (344)
Q Consensus        44 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~  123 (344)
                      +..++.+|..|+||||+|++.|+.+++++|++.     .+..+|.+|.+|+||||+|++.|+.+++++|+++| +++|++
T Consensus       209 ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~-----~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G-Ad~n~~  282 (285)
T d1wdya_         209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-----EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG-ASTDCG  282 (285)
T ss_dssp             TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS-----SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-SCSCCS
T ss_pred             CCCCCccCCCCCCccchhhhcCcHHHHHHHHHc-----CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcc
Confidence            445566778899999999999999999999974     23458889999999999999999999999999999 999998


Q ss_pred             cC
Q 043149          124 NS  125 (344)
Q Consensus       124 n~  125 (344)
                      |.
T Consensus       283 d~  284 (285)
T d1wdya_         283 DL  284 (285)
T ss_dssp             SC
T ss_pred             cC
Confidence            74

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.5e-15  Score=136.78  Aligned_cols=86  Identities=10%  Similarity=0.107  Sum_probs=67.0

Q ss_pred             CCcccc-cCCCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcH---HHHHHHHhccCccc
Q 043149           45 ESILQV-TIRKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHI---QIVRLIVKRVRDQI  120 (344)
Q Consensus        45 ~~~~~~-d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~---~~v~~Ll~~~~~~~  120 (344)
                      .+++.. |.+|+||||+||..|+.++|++|+++|++      ++.+|..|+||||.|+..++.   +.++.+++.....+
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad------~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~  170 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN------RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL  170 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhh
Confidence            345544 89999999999999999999999996654      778999999999999987752   22233333322457


Q ss_pred             ccccCCCCCHHHHHhh
Q 043149          121 NARNSKDNTAMDMVKF  136 (344)
Q Consensus       121 ~~~n~~G~Tpl~~a~~  136 (344)
                      +.+|..|+||+|.++.
T Consensus       171 ~~~d~~g~t~lh~~~~  186 (301)
T d1sw6a_         171 ILEDSMNRTILHHIII  186 (301)
T ss_dssp             GEECTTCCCHHHHHHH
T ss_pred             hhcccccCCHHHHHHH
Confidence            7889999999998763

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.8e-14  Score=116.96  Aligned_cols=96  Identities=18%  Similarity=0.194  Sum_probs=83.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhchhccCccccccccCCCCCcHHHHHHHCCcHHHHHHHHhccCcccccccCCCCCHHH
Q 043149           53 RKETALHVAAKYDRLEVLETMLGWLRYVNMDDILNWKNDEGNTLLHISISRSHIQIVRLIVKRVRDQINARNSKDNTAMD  132 (344)
Q Consensus        53 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~ln~~d~~G~TpLH~Aa~~g~~~~v~~Ll~~~~~~~~~~n~~G~Tpl~  132 (344)
                      +|+||||+||.+|+.++++.|++...+  .+..+|.+|.+|+||||+|+..|+.+++++|++++ ++.+..+..|.++++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~--~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~~~   78 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQ--GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG-ASPMALDRHGQTAAH   78 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCccCCCCCccceehhccccccccccccccc-ccccccccccccccc
Confidence            699999999999999999999875433  34568899999999999999999999999999999 999999999999999


Q ss_pred             HHhhhcCCCccHHHHHHHHHHcCC
Q 043149          133 MVKFHLQTKPEFEELKSMVRKAGG  156 (344)
Q Consensus       133 ~a~~~~~~~~~~~~i~~~L~~~ga  156 (344)
                      .|.     .....++++.+.....
T Consensus        79 ~a~-----~~~~~~~~~~~~~~~~   97 (228)
T d1k1aa_          79 LAC-----EHRSPTCLRALLDSAA   97 (228)
T ss_dssp             HHH-----HTTCHHHHHHHHHHSC
T ss_pred             ccc-----ccccccchhhhhhccc
Confidence            998     6666777776665543