Citrus Sinensis ID: 043156

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
Protein Sequence
ENLELVEGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSVGGTACKSFSQDLSK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHcccccccccccccEEHccEEEEEcccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccccc
Coil and Loop (DISEMBL)
enlelvegkvdwkgrpavkykhggikTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISgsveflpppcnvfdptagckkiegSDAALLFVALYLIATGTagikaalppygadqfdekdpieARQMSSFFNLLFLAVCIGGAISVTLIVWIQdnkgwdrgfgLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNrklelpedpmelYEINMDKEaaieteflphrdiFRFLDKAAIQKTSTenleiteapnpwklcRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFsiqqgltmdtsvttsfhippaslpilPILFMILAvpvydrifvpfagkitgnptgitHLQRVGVGLVLSCISMAIAAIFEVIRKDvardhnmldaipvvqplpistFWLSIQFFIFGIADMFTYVGLLEFfyseapkgikSLSTCFLWCSMALGYFFSTILVNIVNSATrgitqsggwlagnninRNHLNLFFWLLSALSFINFSVYLFMSsrynyrpqtsvggtacksfsqdlsk
Flexible Loop (DISEMBL)
enlelvegkvdwkgrpavkykhgGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTStenleiteapnpwklCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNyrpqtsvggtacksfsqdlsk
Low Complexity Region (SEG)
ENLELVEGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHippaslpilpilFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSVGGTACKSFSQDLSK
Disordered region (IsUnstruct)
******EGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFD****IEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRP******************
Disordered Region (DISOPRED)
**LELVEGKVDWKGRPA*****GGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPP*N***********EGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKD*IEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPME********************DIFRFLDKAAIQK****************LCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYN*********************
Disordered Region (DISEMBL)
ENLELVEGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSVGGTAC*********
Disordered Region (DISPRO)
*****VEGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQ*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ENLELVEGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSVGGTACKSFSQDLSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	578	2.2.26 [Sep-21-2011]
Q8H157	585	Nitrate transporter 1.2 O	yes	no	0.939	0.928	0.412	1e-126
Q93VV5	591	Probable peptide/nitrate	no	no	0.934	0.913	0.418	1e-126
Q8VYE4	567	Probable peptide/nitrate	no	no	0.920	0.938	0.413	1e-123
Q56XQ6	601	Probable peptide/nitrate	no	no	0.918	0.883	0.401	1e-117
Q9FM20	589	Probable peptide/nitrate	no	no	0.930	0.913	0.404	1e-113
Q9M390	570	Peptide transporter PTR1	no	no	0.932	0.945	0.397	1e-109
Q9LFB8	570	Peptide transporter PTR5	no	no	0.935	0.949	0.385	1e-107
P46032	585	Peptide transporter PTR2	no	no	0.941	0.929	0.389	1e-106
Q9SZY4	577	Nitrate transporter 1.4 O	no	no	0.906	0.908	0.403	1e-102
Q05085	590	Nitrate transporter 1.1 O	no	no	0.925	0.906	0.381	1e-102

>sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1

 Score =  453 bits (1166), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 247/599 (41%), Positives = 363/599 (60%), Gaps = 56/599 (9%)

Query: 1   ENLELVEGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLD 60
           E +   EG  DW+ R AVK +HGG+  +  +L     ENLA +A   NLV Y    +H+ 
Sbjct: 5   EEVSRWEGYADWRNRAAVKGRHGGMLAASFVLVVEILENLAYLANASNLVLYLREYMHMS 64

Query: 61  LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL--------------- 105
            +++AN VTN+MGT+++L+++   L+DAF   F+  LIS S+EFL               
Sbjct: 65  PSKSANDVTNFMGTAFLLALLGGFLSDAFFSTFQIFLISASIEFLGLIILTIQARTPSLM 124

Query: 106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQ 165
           PP C+   PT  C+++ GS AA+LFV LYL+A G  GIK +L  +GA+QFDE  P   +Q
Sbjct: 125 PPSCD--SPT--CEEVSGSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQ 180

Query: 166 MSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQ 225
            S+FFN     +  G  ++VT +VW++DNKGW+ GFG+S++A+F++ +IF +G   YR +
Sbjct: 181 RSTFFNYFVFCLACGALVAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNK 240

Query: 226 VVQGSSVLIEIIQVYVAA---------IRNRKLELPEDP--------MELYEINMDKEAA 268
           +  GS  L  I++V +AA           N    +   P         +  E   + E  
Sbjct: 241 IPCGSP-LTTILKVLLAASVKCCSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELEKP 299

Query: 269 IETEFLPHR----DIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIP 324
            + E LP R    +  + L+ AA +K     LE          C V QVE+ KI+L M+P
Sbjct: 300 RQEEALPPRAQLTNSLKVLNGAADEKPVHRLLE----------CTVQQVEDVKIVLKMLP 349

Query: 325 IFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIF 384
           IF CTI++  CLAQL TFS+QQ  +M+T +  S  IPPASLPI P++F+++  P+YD + 
Sbjct: 350 IFACTIMLNCCLAQLSTFSVQQAASMNTKI-GSLKIPPASLPIFPVVFIMILAPIYDHLI 408

Query: 385 VPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPL 444
           +PFA K T   TG+THLQR+GVGLVLS ++MA+AA+ E+ RK VA+D  +LD+    + L
Sbjct: 409 IPFARKATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDS---KETL 465

Query: 445 PISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILV 504
           P++  W+++Q+   G AD+FT  GLLE+F++EAP  ++SL+T   W S+A+GY+ S+++V
Sbjct: 466 PVTFLWIALQYLFLGSADLFTLAGLLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSVIV 525

Query: 505 NIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTS 563
           +IVNS T G + +  WL G +INR  L+ F+WL+  LS  NF  YLF + RY YR   S
Sbjct: 526 SIVNSIT-GSSGNTPWLRGKSINRYKLDYFYWLMCVLSAANFLHYLFWAMRYKYRSTGS 583

Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1

 Score =  451 bits (1160), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/576 (41%), Positives = 354/576 (61%), Gaps = 36/576 (6%)

Query: 1   ENLELVEGK-VDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHL 59
            N EL E + VDW+GRP+   KHGG++ +L +L    FE +   A+G NL+TY    +H 
Sbjct: 20  NNWELAEEESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHF 79

Query: 60  DLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF--------------- 104
            L++AAN VTN++GT +I +++   L+DAF+G F  ++I G VE                
Sbjct: 80  PLSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQL 139

Query: 105 LPPPCN-VFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEA 163
            PP CN + D T  C++ +G  A + F+ALYL+A G+  +K  +  +GADQF +  P ++
Sbjct: 140 KPPKCNPLIDQT--CEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQS 197

Query: 164 RQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYR 223
           +++SS+FN  + A  +G  I++TL+VW+Q + G D GFG+S+ A+ +  I   +G   +R
Sbjct: 198 KRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFR 257

Query: 224 FQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFL 283
            +  +  S+   I  V VAAI  RKL  P DP  L+  +      + +  LPH   FRFL
Sbjct: 258 NKRPR-RSIFTPIAHVIVAAILKRKLASPSDPRMLHGDHHVANDVVPSSTLPHTPRFRFL 316

Query: 284 DKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFS 343
           DKA I+   T   E     +PW+LC VTQVE  K ++ ++PIF  TIV    LAQLQTFS
Sbjct: 317 DKACIKIQDTNTKE-----SPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFS 371

Query: 344 IQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQR 403
           +QQG +M+T ++ SFHIPPASL  +P + +I  VP+YD   VPFA K+TG+ +GI  L R
Sbjct: 372 VQQGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTR 431

Query: 404 VGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADM 463
           +G+GL LS  SM  AA+ E  R    RD ++LD         +S FW++ QF IFGI++M
Sbjct: 432 IGIGLFLSTFSMVSAAMLEKKR----RDSSVLDG------RILSIFWITPQFLIFGISEM 481

Query: 464 FTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAG 523
           FT VGL+EFFY ++ KG++S      +CS + G++FS++LV++VN  T     S GWL  
Sbjct: 482 FTAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGE 541

Query: 524 NNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYR 559
           N++N++ L+LF+WLL+ LS +NF  YLF  SR+N +
Sbjct: 542 NDLNKDRLDLFYWLLAVLSLLNFLSYLFW-SRWNIK 576

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYE4|PTR12_ARATH Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1

 Score =  443 bits (1140), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/568 (41%), Positives = 351/568 (61%), Gaps = 36/568 (6%)

Query: 7   EGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAAN 66
           EG  DW+ + A++ +HGG+  +  +LA    ENLA +A   NLV Y    +H+ LA +++
Sbjct: 13  EGYADWRNKAALRGRHGGMLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSLARSSS 72

Query: 67  QVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL---------------PPPCNV 111
           +VT +M T+++L+++   LADAF   F   LIS S+EFL               PPPC  
Sbjct: 73  EVTTFMATAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMPPPCKS 132

Query: 112 FDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFN 171
                 C+ + GS AA LFV LYL++ G  GIK +LP +GA+QFDE  P   +Q S+FFN
Sbjct: 133 -SAALRCEVVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFN 191

Query: 172 LLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSS 231
                +  G  ++VT +VWI+DNKGW+ GFG+S++++FL+ ++F  G   Y+ ++ +GS 
Sbjct: 192 YYVFCLSCGALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSP 251

Query: 232 VLIEIIQVYVAA-IRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQK 290
            L  I +V +AA I +   +   +     E+  + E    ++ L +      L+KA   K
Sbjct: 252 -LTTIFKVLLAASIVSCSSKTSSNHFTSREVQSEHEEKTPSQSLTNS--LTCLNKAIEGK 308

Query: 291 TSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTM 350
           T           + W  C V QVE+ KI+L M+PIF CTI++  CLAQL T+S+ Q  TM
Sbjct: 309 TH----------HIWLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATM 358

Query: 351 DTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVL 410
           +  +  +F++P ASLP+ P++FM++  P YD + +PFA K+T +  GITHLQR+GVGLVL
Sbjct: 359 NRKI-VNFNVPSASLPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVL 417

Query: 411 SCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLL 470
           S ++MA+AA+ E+ RK VAR+  +LD+    + LPI+  W+++Q+   G AD+FT  GLL
Sbjct: 418 SIVAMAVAALVELKRKQVAREAGLLDS---EETLPITFLWIALQYLFLGSADLFTLAGLL 474

Query: 471 EFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNH 530
           EFF++EAP  ++SL+T   W S+ALGY+ S+++V IVN  T+   QS  WL G  +NRN 
Sbjct: 475 EFFFTEAPSSMRSLATSLSWASLALGYYLSSVMVPIVNRVTKSAGQS-PWL-GEKLNRNR 532

Query: 531 LNLFFWLLSALSFINFSVYLFMSSRYNY 558
           L+LF+WL+  LS +NF  YLF + RY Y
Sbjct: 533 LDLFYWLMCVLSVVNFLHYLFWAKRYKY 560

Arabidopsis thaliana (taxid: 3702)

>sp|Q56XQ6|PTR15_ARATH Probable peptide/nitrate transporter At1g33440 OS=Arabidopsis thaliana GN=At1g33440 PE=2 SV=1

 Score =  424 bits (1089), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/571 (40%), Positives = 348/571 (60%), Gaps = 40/571 (7%)

Query: 10  VDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVT 69
           VD++GRP    KHGG + +L +L    FE +A  A+G NL+TY    +H  L+++AN VT
Sbjct: 27  VDFRGRPCRPSKHGGTRAALFVLGFQAFEMMAIAAVGNNLITYVFNEMHFPLSKSANLVT 86

Query: 70  NYMGTSYILSIVVALLADAFIGRFKAVLISGSVE---------------FLPPPCNVFDP 114
           N++GT ++LS++   L+D+++G F+ +L+ G +E                 PP CN+   
Sbjct: 87  NFIGTVFLLSLLGGFLSDSYLGSFRTMLVFGVIEISGFILLSVQAHLPELRPPECNMKST 146

Query: 115 TAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLF 174
           T  C +  G  AA L+ AL L+A G+  +K  +  +GA+QF  KD    R++SSFFN  +
Sbjct: 147 TIHCVEANGYKAATLYTALCLVALGSGCLKPNIISHGANQFQRKD---LRKLSSFFNAAY 203

Query: 175 LAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLI 234
            A  +G  I++TL+VW+Q + G D GFG+S+  +    I   AG   YR +   GS +  
Sbjct: 204 FAFSMGQLIALTLLVWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSFYRNKPPSGS-IFT 262

Query: 235 EIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTE 294
            I QV+VAAI  RK   P +P  +++ + D    +  + L H + FRFLDKA I KT  +
Sbjct: 263 PIAQVFVAAITKRKQICPSNPNMVHQPSTD---LVRVKPLLHSNKFRFLDKACI-KTQGK 318

Query: 295 NLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSV 354
            +E     +PW+LC + QV   KI+L +IPIF CTI+    LAQLQTFS+QQG +M+T +
Sbjct: 319 AME-----SPWRLCTIEQVHQVKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHI 373

Query: 355 TTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCIS 414
           T +F IPPASL  +P + +I  VP+Y+  FVP A K+TGN +GI+ LQR+G GL L+  S
Sbjct: 374 TKTFQIPPASLQAIPYIILIFFVPLYETFFVPLARKLTGNDSGISPLQRIGTGLFLATFS 433

Query: 415 MAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFY 474
           M  AA+ E  R++   + N++          +S FW++ QF IFG+++MFT VGL+EFFY
Sbjct: 434 MVAAALVEKKRRESFLEQNVM----------LSIFWIAPQFLIFGLSEMFTAVGLVEFFY 483

Query: 475 SEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVN--SATRGITQSGGWLAGNNINRNHLN 532
            ++ + ++S  T   +CS + G++ S++LV+ VN  +++ G     GWL  N++N++ L+
Sbjct: 484 KQSSQSMQSFLTAMTYCSYSFGFYLSSVLVSTVNRVTSSNGSGTKEGWLGDNDLNKDRLD 543

Query: 533 LFFWLLSALSFINFSVYLFMSSRYNYRPQTS 563
            F+WLL++LSFINF  YLF S  Y+  P  +
Sbjct: 544 HFYWLLASLSFINFFNYLFWSRWYSCDPSAT 574

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM20|PTR54_ARATH Probable peptide/nitrate transporter At5g62730 OS=Arabidopsis thaliana GN=At5g62730 PE=2 SV=2

 Score =  410 bits (1055), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/559 (40%), Positives = 334/559 (59%), Gaps = 21/559 (3%)

Query: 7   EGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAAN 66
            G VDW+ RPA++ +HGG+  +  +L     ENLA +A   NLV Y +  +    + AAN
Sbjct: 42  NGYVDWRSRPALRGRHGGMLAASFVLVVEVLENLAFLANASNLVLYLSTKMGFSPSGAAN 101

Query: 67  QVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDA 126
            VT +MGT++ L+++   LADAF   F   L+S ++EFL     V    A     E    
Sbjct: 102 AVTAFMGTAFFLALLGGFLADAFFTTFHIYLVSAAIEFLG--LMVLTVQAHEHSTEPWSR 159

Query: 127 ALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVT 186
             LFV LYL+A G  GIK +LPP+GA+QFDE+     RQ S FFN    ++  G  I+VT
Sbjct: 160 VFLFVGLYLVALGVGGIKGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVT 219

Query: 187 LIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAI-- 244
           ++VW++DNKGW  GFG+S+ A+ ++  +F AG  +YR +V  GS +   + +V  AA+  
Sbjct: 220 VVVWLEDNKGWSYGFGVSTAAILISVPVFLAGSRVYRLKVPSGSPI-TTLFKVLTAALYA 278

Query: 245 RNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIF--RFLDKAAIQKTSTENLEITEAP 302
           + +K       +  +  N D + ++  +     D F   FL +   ++ S         P
Sbjct: 279 KYKKRRTSRIVVTCHTRN-DCDDSVTKQNCDGDDGFLGSFLGEVVRERESL--------P 329

Query: 303 NPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPP 362
            P + C   QV++ KI++ ++PIF  TI++  CLAQL TFS+QQ  TM+T +  SF +PP
Sbjct: 330 RPLR-CTEEQVKDVKIVIKILPIFMSTIMLNCCLAQLSTFSVQQASTMNTKL-GSFTVPP 387

Query: 363 ASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFE 422
           A+LP+ P++FM++  P Y+ + +P A K T   TGITHLQR+G GLVLS ++MA+AA+ E
Sbjct: 388 AALPVFPVVFMMILAPTYNHLLLPLARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVE 447

Query: 423 VIRKD--VARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKG 480
             RK   V+   N   +     PLPI+  W++IQ+   G AD+FT  G++EFF++EAP  
Sbjct: 448 TKRKHVVVSCCSNNNSSSYSSSPLPITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPST 507

Query: 481 IKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSA 540
           ++SL+T   W S+A+GY+FS++LV+ VN  T G+     WL G N+N+ HL  F+WL+  
Sbjct: 508 MRSLATSLSWASLAMGYYFSSVLVSAVNFVT-GLNHHNPWLLGENLNQYHLERFYWLMCV 566

Query: 541 LSFINFSVYLFMSSRYNYR 559
           LS INF  YLF +SRY YR
Sbjct: 567 LSGINFLHYLFWASRYVYR 585

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/568 (39%), Positives = 320/568 (56%), Gaps = 29/568 (5%)

Query: 7   EGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAAN 66
           +G VD    PA K K G  K    IL     E LA   +G NLV Y    L+   A AAN
Sbjct: 10  DGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAAN 69

Query: 67  QVTNYMGTSYILSIVVALLADAFIGRFKAV--------------LISGSVEFLPP-PCNV 111
            VTN+ GT YI  ++ A +ADA++GR+  +               +S SV  L P  CN 
Sbjct: 70  NVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCN- 128

Query: 112 FDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFN 171
               A       S  A+ FVALY+IA GT GIK  +  +GADQFDE D  E  + SSFFN
Sbjct: 129 ----ADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFN 184

Query: 172 LLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSS 231
             + ++ +G  I+ T++VWIQ N GW  GFG+ +VA+ +A   F  G   YR Q   G S
Sbjct: 185 WFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQR-PGGS 243

Query: 232 VLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKT 291
            L  I QV VAA R   +++PED   L+E   D+     +  L H D  +F DKAA++  
Sbjct: 244 PLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQ 303

Query: 292 STENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMD 351
           S ++++  E  NPW+LC VTQVE  K I+ ++P++   IV     +Q+ T  + QG TMD
Sbjct: 304 S-DSIKDGEV-NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMD 361

Query: 352 TSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLS 411
             +  +F IP ASL +   + ++   PVYD+  +P A K T N  G T LQR+G+GLV+S
Sbjct: 362 QHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVS 421

Query: 412 CISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLE 471
             +M  A + EV+R D  + HN  D     + + +S FW   Q+ + G A++FT++G LE
Sbjct: 422 IFAMITAGVLEVVRLDYVKTHNAYDQ----KQIHMSIFWQIPQYLLIGCAEVFTFIGQLE 477

Query: 472 FFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHL 531
           FFY +AP  ++SL +     ++ALG + ST+LV +V   T+      GW+  +N+NR HL
Sbjct: 478 FFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKK-NGKPGWIP-DNLNRGHL 535

Query: 532 NLFFWLLSALSFINFSVYLFMSSRYNYR 559
           + FF+LL+ LSF+NF VYL++S RY Y+
Sbjct: 536 DYFFYLLATLSFLNFLVYLWISKRYKYK 563

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  390 bits (1003), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 325/571 (56%), Gaps = 30/571 (5%)

Query: 7   EGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAAN 66
           +G +D   +PA K K G  K    IL     E LA   +  NL+ Y    ++++   A+ 
Sbjct: 11  DGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASK 70

Query: 67  QVTNYMGTSYILSIVVALLADAFIGRFKAV--------------LISGSVEFLPPPCNVF 112
            V+N+ GT Y   ++ A +ADA++GR+  +               IS SV  L P C+  
Sbjct: 71  SVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCS-- 128

Query: 113 DPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNL 172
                C    G   A+ F+ALYLIA GT GIK  +  +GADQFD+ D  E    SSFFN 
Sbjct: 129 --GETCHATAG-QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNW 185

Query: 173 LFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSV 232
            +  + +G  I+ +++VWIQ N GW  G G+ +VA+ +A + F AG   YR Q   G S 
Sbjct: 186 FYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQK-PGGSP 244

Query: 233 LIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAI-ETEFLPHRDIFRFLDKAAIQKT 291
           L  ++QV VA+ R  K+++PED   LYE N D E++I  +  L H  I  F DKAA++ T
Sbjct: 245 LTRMLQVIVASCRKSKVKIPEDESLLYE-NQDAESSIIGSRKLEHTKILTFFDKAAVE-T 302

Query: 292 STENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMD 351
            ++N    ++ + WKLC VTQVE  K ++ ++PI+   IV     +Q+ T  + QG T+D
Sbjct: 303 ESDNKGAAKSSS-WKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLD 361

Query: 352 TSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLS 411
             +  +F IP ASL +   L ++   PVYD++ VPFA K TG+  G T LQR+G+GLV+S
Sbjct: 362 QHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVIS 421

Query: 412 CISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLE 471
             SM  A I EV R +  + HN+ +     + +P++ FW   Q+F+ G A++FT++G LE
Sbjct: 422 IFSMVSAGILEVARLNYVQTHNLYNE----ETIPMTIFWQVPQYFLVGCAEVFTFIGQLE 477

Query: 472 FFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHL 531
           FFY +AP  ++SL +     ++A G + ST LV +V   TR   +  GW+A  N+N  HL
Sbjct: 478 FFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRP-GWIA-KNLNNGHL 535

Query: 532 NLFFWLLSALSFINFSVYLFMSSRYNYRPQT 562
           + FFWLL+ LSF+NF VYL+++  Y Y+  T
Sbjct: 536 DYFFWLLAGLSFLNFLVYLWIAKWYTYKKTT 566

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/572 (38%), Positives = 325/572 (56%), Gaps = 28/572 (4%)

Query: 7   EGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAAN 66
           +G VD+ G P +K K G  K    IL     E LA   +  NL+TY    LH     AA 
Sbjct: 27  DGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAAT 86

Query: 67  QVTNYMGTSYILSIVVALLADAFIGRF--------------KAVLISGSVEFLPPPCNVF 112
            VT + GT Y+  ++ A+LADA+ GR+               A+ +S SV  L P   + 
Sbjct: 87  NVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIG 146

Query: 113 DPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNL 172
           D    C     +  A+ F  LYLIA GT GIK  +  +GADQFD+ D  E  + +SFFN 
Sbjct: 147 D---FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNW 203

Query: 173 LFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSV 232
            + ++ IG  +S +L+VWIQ+N+GW  GFG+ +V + LA   F  G PLYRFQ   GS +
Sbjct: 204 FYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPI 263

Query: 233 LIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIE-TEFLPHRDIFRFLDKAAIQKT 291
              I QV VA+ R   +++PED   LYE   DK +AI  +  + H D  ++LDKAA+   
Sbjct: 264 -TRISQVVVASFRKSSVKVPEDATLLYE-TQDKNSAIAGSRKIEHTDDCQYLDKAAV--I 319

Query: 292 STENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMD 351
           S E  +  +  N W+LC VTQVE  KI++ M PI+   I+ +   AQ+ T  +QQG  M+
Sbjct: 320 SEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMN 379

Query: 352 TSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLS 411
             +  SF +PPA+L       +I+ VP+YDR  VP A K TG   G T +QR+G+GL +S
Sbjct: 380 CKI-GSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVS 438

Query: 412 CISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLE 471
            + MA AAI E+IR  +A D  ++++     P+PIS  W   Q+FI G A++F ++G LE
Sbjct: 439 VLCMAAAAIVEIIRLHMANDLGLVES---GAPVPISVLWQIPQYFILGAAEVFYFIGQLE 495

Query: 472 FFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHL 531
           FFY ++P  ++SL +     + ALG + S++++ +V   T    Q  GW++ +N+N  HL
Sbjct: 496 FFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQE-GWIS-DNLNSGHL 553

Query: 532 NLFFWLLSALSFINFSVYLFMSSRYNYRPQTS 563
           + FFWLL+ LS +N +VY F ++RY  +  +S
Sbjct: 554 DYFFWLLAGLSLVNMAVYFFSAARYKQKKASS 585

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1

 Score =  373 bits (958), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 227/562 (40%), Positives = 330/562 (58%), Gaps = 38/562 (6%)

Query: 6   VEGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAA 65
           V   VD+KGRPA K K GG  T+ LIL     E L+T+ + VNLVTY    +HL  + +A
Sbjct: 9   VADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSA 68

Query: 66  NQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV---------------EFLPPPCN 110
           N VT++MGTS++L ++   LAD+F+GRFK + I  ++               E  PP C+
Sbjct: 69  NIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPPTCH 128

Query: 111 VFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFF 170
             +    C         +L+V+LYLIA GT G+K+++  +G+DQFD+KDP E   M+ FF
Sbjct: 129 HGE---ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185

Query: 171 NLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGS 230
           N  F  + +G  ++VT++V++QD  G    +G+ +V++ +A +IF  G   YR++  QGS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245

Query: 231 SVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAI-- 288
            V ++I QV  AA R RK+ELP+  + LYE   D    I  E   H D F  LDKAAI  
Sbjct: 246 PV-VQIFQVIAAAFRKRKMELPQSIVYLYE---DNPEGIRIE---HTDQFHLLDKAAIVA 298

Query: 289 QKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGL 348
           +    + L+    PNPWKL  VT+VE  K+++ ++PI+  TI+     AQ+ TFS++Q  
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358

Query: 349 TMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGL 408
           TM  ++  SF IP  SL +  +  +++ + VYDR  +PF  K  G P G + LQR+ +GL
Sbjct: 359 TMRRNI-GSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKP-GFSSLQRIAIGL 416

Query: 409 VLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVG 468
           VLS   MA AA+ E  R  VA+  +        + LPIS F L  QFF+ G  + F Y G
Sbjct: 417 VLSTAGMAAAALVEQKRLSVAKSSSQ-------KTLPISVFLLVPQFFLVGAGEAFIYTG 469

Query: 469 LLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINR 528
            L+FF +++PKG+K++ST     +++LG+F S+ LV+IV   T   T   GWLA +NIN 
Sbjct: 470 QLDFFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDV-GWLA-DNINH 527

Query: 529 NHLNLFFWLLSALSFINFSVYL 550
             L+ F+WLL  LS INF VY+
Sbjct: 528 GRLDYFYWLLVILSGINFVVYI 549

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q05085|PTR7_ARATH Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/571 (38%), Positives = 336/571 (58%), Gaps = 36/571 (6%)

Query: 11  DWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTN 70
           D++GRPA + K GG  ++ +IL     E L T+ +GVNLVTY  G +HL  A AAN VTN
Sbjct: 17  DFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTN 76

Query: 71  YMGTSYILSIVVALLADAFIGRFKAVLISGSVE---------------FLPPPCNVFDPT 115
           ++GTS++L ++   +AD F+GR+  + I  +++                 PP CN   PT
Sbjct: 77  FLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCN---PT 133

Query: 116 --AGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLL 173
             + C++  G    +L++ALYL A GT G+KA++  +G+DQFDE +P E  +M+ FFN  
Sbjct: 134 TSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRF 193

Query: 174 FLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVL 233
           F  + +G  ++VT++V++QD+ G   G+G+ + A+ LA  +F AG   YRF+ + GS  +
Sbjct: 194 FFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSP-M 252

Query: 234 IEIIQVYVAAIRNRKLELPEDPMELYEIN--MDKEAAIE-TEFLPHRDIFRFLDKAAIQK 290
            ++  V VAA RNRKLELP DP  LY+++  +  E +++  + LPH + FR LDKAAI+ 
Sbjct: 253 TQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIR- 311

Query: 291 TSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTM 350
              E    +   N W L  +T VE  K I+ M+PI+   I+     AQL T S+ Q  T+
Sbjct: 312 -DQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETL 370

Query: 351 DTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVL 410
           D S+  SF IPPAS+ +  +  ++L   VYDR+ +    K+   P G+  LQR+G+GL  
Sbjct: 371 DRSI-GSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFF 429

Query: 411 SCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLL 470
             ++MA+AA+ E+ R   A  H      P V+ LP+  + L  Q+ I GI +   Y G L
Sbjct: 430 GSMAMAVAALVELKRLRTAHAHG-----PTVKTLPLGFYLLIPQYLIVGIGEALIYTGQL 484

Query: 471 EFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNH 530
           +FF  E PKG+K +ST  L  ++ALG+FFS++LV IV   T    ++  W+A +++N+  
Sbjct: 485 DFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFT---GKAHPWIA-DDLNKGR 540

Query: 531 LNLFFWLLSALSFINFSVYLFMSSRYNYRPQ 561
           L  F+WL++ L  +NF ++L  S  Y Y+ +
Sbjct: 541 LYNFYWLVAVLVALNFLIFLVFSKWYVYKEK 571

Dual affinity nitrate transporter. Involved in proton-dependent nitrate uptake and in the regulation of the nitrate transporter NRT2.1. Acts also as a nitrate sensor that trigger a specific signaling pathway stimulating lateral root growth and seed germination. The uptake activity is not required for sensor function. Displays an auxin transport facilitation inhibited by high nitrate concentration. Required to prevent auxin accumulation in preemerged lateral root primordia and young lateral roots when external nitrate concentration is low or null. May be involved in the basipetal transport of auxin out of the lateral root tips.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	578
297740573	1252	unnamed protein product [Vitis vinifera]	0.977	0.451	0.724	0.0
359483559	597	PREDICTED: probable peptide/nitrate tran	0.977	0.946	0.724	0.0
255562554	587	nitrate transporter, putative [Ricinus c	0.965	0.950	0.708	0.0
449508599	592	PREDICTED: nitrate transporter 1.2-like	0.970	0.947	0.699	0.0
356528360	604	PREDICTED: probable peptide/nitrate tran	0.970	0.928	0.694	0.0
357447051	602	Peptide transporter PTR1 [Medicago trunc	0.967	0.928	0.669	0.0
356557777	600	PREDICTED: nitrate transporter 1.2-like	0.972	0.936	0.670	0.0
356546534	596	PREDICTED: nitrate transporter 1.2-like	0.977	0.947	0.670	0.0
224078986	556	predicted protein [Populus trichocarpa]	0.901	0.937	0.705	0.0
356510991	628	PREDICTED: nitrate transporter 1.2-like	0.963	0.886	0.675	0.0

>gi|297740573|emb|CBI30755.3| unnamed protein product [Vitis vinifera]

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/580 (72%), Positives = 487/580 (83%), Gaps = 15/580 (2%)

Query: 4    ELVEGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAE 63
            ELVEGKVDWKGR A+K KHGG + S LILA+F  EN+AT+AL VNLVTYFNGV+H  +A+
Sbjct: 662  ELVEGKVDWKGRTAIKNKHGGQRFSSLILASFALENMATVALAVNLVTYFNGVMHFSIAD 721

Query: 64   AANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL---------------PPP 108
            AAN++TNYMGT+YILSIVVA LADA+IGRF AVL+S  +E +               PP 
Sbjct: 722  AANELTNYMGTAYILSIVVAFLADAYIGRFYAVLVSAFIELVGLGLLAVQAHYPKLKPPT 781

Query: 109  CNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSS 168
            C +FDPTA C+++ G +AALLFVALYL+A GTAGIKAALP +GADQFDEKDP EA QMSS
Sbjct: 782  CVIFDPTADCQQVHGGNAALLFVALYLVAAGTAGIKAALPTHGADQFDEKDPQEAMQMSS 841

Query: 169  FFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQ 228
            FFN L LA+C+GGA+S+TL+VWIQDNKGWD+GFG+ ++A+FLA I+FA GLP YR  V+Q
Sbjct: 842  FFNGLLLALCVGGAVSLTLVVWIQDNKGWDKGFGVPTLAIFLAMIVFAVGLPRYRIHVIQ 901

Query: 229  GSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAI 288
            G+S + EIIQV VA+ RNRKL LP+DP ELYEI+ DKEAA E EFLPHRDI+RFLDKAAI
Sbjct: 902  GTSAITEIIQVLVASFRNRKLPLPDDPAELYEIDKDKEAATEAEFLPHRDIYRFLDKAAI 961

Query: 289  QKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGL 348
            Q T   N +  E PNPWKLCRVTQVENAKII GM+PIFCCTI+MTLCLAQLQTFSI+QGL
Sbjct: 962  QTTLLGNSDKPETPNPWKLCRVTQVENAKIIAGMVPIFCCTIIMTLCLAQLQTFSIEQGL 1021

Query: 349  TMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGL 408
            TMDT V  SF+IPPASLPILP++FMI+ +PVYDRIFVP+A  ITG  TGITHLQR+GVGL
Sbjct: 1022 TMDTRVANSFNIPPASLPILPVIFMIILIPVYDRIFVPYARGITGLRTGITHLQRIGVGL 1081

Query: 409  VLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVG 468
            VLS ISMA +A+ E +RK VARD+NMLDAIPV+QPLPIS FWLS Q+FIFGIAD+FTYVG
Sbjct: 1082 VLSAISMATSAVMEALRKRVARDNNMLDAIPVLQPLPISVFWLSFQYFIFGIADLFTYVG 1141

Query: 469  LLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINR 528
            LLEFFYSEAPK IKS+STCFLW SMALGY+FST++VNIVN AT+GIT+SGGWLAGNNINR
Sbjct: 1142 LLEFFYSEAPKAIKSISTCFLWSSMALGYYFSTVVVNIVNRATKGITRSGGWLAGNNINR 1201

Query: 529  NHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSVGGTA 568
            NHLNLF+WLLS LS INF VYLF++ RY YRPQ  V   A
Sbjct: 1202 NHLNLFYWLLSILSVINFFVYLFVAKRYKYRPQALVAPIA 1241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483559|ref|XP_003632975.1| PREDICTED: probable peptide/nitrate transporter At1g27040-like [Vitis vinifera]

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/580 (72%), Positives = 487/580 (83%), Gaps = 15/580 (2%)

Query: 4   ELVEGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAE 63
           ELVEGKVDWKGR A+K KHGG + S LILA+F  EN+AT+AL VNLVTYFNGV+H  +A+
Sbjct: 7   ELVEGKVDWKGRTAIKNKHGGQRFSSLILASFALENMATVALAVNLVTYFNGVMHFSIAD 66

Query: 64  AANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL---------------PPP 108
           AAN++TNYMGT+YILSIVVA LADA+IGRF AVL+S  +E +               PP 
Sbjct: 67  AANELTNYMGTAYILSIVVAFLADAYIGRFYAVLVSAFIELVGLGLLAVQAHYPKLKPPT 126

Query: 109 CNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSS 168
           C +FDPTA C+++ G +AALLFVALYL+A GTAGIKAALP +GADQFDEKDP EA QMSS
Sbjct: 127 CVIFDPTADCQQVHGGNAALLFVALYLVAAGTAGIKAALPTHGADQFDEKDPQEAMQMSS 186

Query: 169 FFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQ 228
           FFN L LA+C+GGA+S+TL+VWIQDNKGWD+GFG+ ++A+FLA I+FA GLP YR  V+Q
Sbjct: 187 FFNGLLLALCVGGAVSLTLVVWIQDNKGWDKGFGVPTLAIFLAMIVFAVGLPRYRIHVIQ 246

Query: 229 GSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAI 288
           G+S + EIIQV VA+ RNRKL LP+DP ELYEI+ DKEAA E EFLPHRDI+RFLDKAAI
Sbjct: 247 GTSAITEIIQVLVASFRNRKLPLPDDPAELYEIDKDKEAATEAEFLPHRDIYRFLDKAAI 306

Query: 289 QKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGL 348
           Q T   N +  E PNPWKLCRVTQVENAKII GM+PIFCCTI+MTLCLAQLQTFSI+QGL
Sbjct: 307 QTTLLGNSDKPETPNPWKLCRVTQVENAKIIAGMVPIFCCTIIMTLCLAQLQTFSIEQGL 366

Query: 349 TMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGL 408
           TMDT V  SF+IPPASLPILP++FMI+ +PVYDRIFVP+A  ITG  TGITHLQR+GVGL
Sbjct: 367 TMDTRVANSFNIPPASLPILPVIFMIILIPVYDRIFVPYARGITGLRTGITHLQRIGVGL 426

Query: 409 VLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVG 468
           VLS ISMA +A+ E +RK VARD+NMLDAIPV+QPLPIS FWLS Q+FIFGIAD+FTYVG
Sbjct: 427 VLSAISMATSAVMEALRKRVARDNNMLDAIPVLQPLPISVFWLSFQYFIFGIADLFTYVG 486

Query: 469 LLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINR 528
           LLEFFYSEAPK IKS+STCFLW SMALGY+FST++VNIVN AT+GIT+SGGWLAGNNINR
Sbjct: 487 LLEFFYSEAPKAIKSISTCFLWSSMALGYYFSTVVVNIVNRATKGITRSGGWLAGNNINR 546

Query: 529 NHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSVGGTA 568
           NHLNLF+WLLS LS INF VYLF++ RY YRPQ  V   A
Sbjct: 547 NHLNLFYWLLSILSVINFFVYLFVAKRYKYRPQALVAPIA 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562554|ref|XP_002522283.1| nitrate transporter, putative [Ricinus communis] gi|223538536|gb|EEF40141.1| nitrate transporter, putative [Ricinus communis]

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/576 (70%), Positives = 481/576 (83%), Gaps = 18/576 (3%)

Query: 1   ENLELVEGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLD 60
           E LE +EGKVDWKGR AVKYKHGG  TS L+L  FGFE LA++AL VNLVTYFNG++H +
Sbjct: 3   EKLEFIEGKVDWKGRQAVKYKHGGTGTSFLVLGTFGFEELASVALAVNLVTYFNGIMHFE 62

Query: 61  LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL--------------- 105
           +A+AANQ+TN+MG  YIL+I+VA +AD +IGR+KAV++SG +E L               
Sbjct: 63  IADAANQLTNFMGAGYILTILVAFVADTYIGRWKAVILSGFLELLGLVVLAVQAHFPKLK 122

Query: 106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQ 165
           PP CNVFDPT+ C+KI G+ A LLFV LYL+A G+ GIKAALP +GADQFD++D  E+RQ
Sbjct: 123 PPLCNVFDPTSHCEKIGGAHALLLFVGLYLVAFGSGGIKAALPSHGADQFDDRDAKESRQ 182

Query: 166 MSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQ 225
           MSSFFN L L +C+GGAIS+TL+VW+QD KGWD GF  S++A+ L  I+F+AGLP+YR Q
Sbjct: 183 MSSFFNHLLLVICVGGAISLTLLVWVQDKKGWDWGFTFSALAMVLGLIMFSAGLPMYRIQ 242

Query: 226 VVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDK 285
           +VQ SS + EIIQVYVAAIRNRKL++PEDP ELYEIN DKEAA+E EF  H D FRFLDK
Sbjct: 243 LVQKSSAITEIIQVYVAAIRNRKLQIPEDPSELYEINKDKEAAMEAEFQFHTDTFRFLDK 302

Query: 286 AAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQ 345
           AA+Q    +     EAP PWKLCRVTQVE AKIILGM+P+FCCTI+MTLCLAQLQTFS+Q
Sbjct: 303 AAVQTGQNKK---PEAPIPWKLCRVTQVEKAKIILGMLPVFCCTIIMTLCLAQLQTFSVQ 359

Query: 346 QGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVG 405
           QGL+MDT +T SF+IPPASLPI+P LF+I+ +P+YDR+FVPFA KITG+P GITHLQR+G
Sbjct: 360 QGLSMDTRITKSFNIPPASLPIIPFLFLIVIIPIYDRLFVPFARKITGHPAGITHLQRIG 419

Query: 406 VGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFT 465
           VGL+LS ISMA AA+ E  RK VARDHNMLDAIPV+QPLPIS FWLSIQ+FIFGIADMFT
Sbjct: 420 VGLILSSISMASAALMEGKRKQVARDHNMLDAIPVLQPLPISVFWLSIQYFIFGIADMFT 479

Query: 466 YVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNN 525
           YVGLLEFFYS+APKGIKS+STCFLW SMALGYFFSTILV +VNSAT+ IT+SGGWLAGNN
Sbjct: 480 YVGLLEFFYSQAPKGIKSISTCFLWSSMALGYFFSTILVKMVNSATKDITRSGGWLAGNN 539

Query: 526 INRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQ 561
           INRNHLNLF+WLLSALSFINF  YLF++ RY YRPQ
Sbjct: 540 INRNHLNLFYWLLSALSFINFCTYLFVAKRYKYRPQ 575

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508599|ref|XP_004163358.1| PREDICTED: nitrate transporter 1.2-like [Cucumis sativus]

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/576 (69%), Positives = 475/576 (82%), Gaps = 15/576 (2%)

Query: 1   ENLELVEGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLD 60
           E LE+VEGKVDWKGR A K+KHGG K+SLLILA FGFE++A  AL VNL+TYFN V+H +
Sbjct: 3   EKLEIVEGKVDWKGRLAYKHKHGGTKSSLLILATFGFESMAIFALAVNLITYFNSVMHFE 62

Query: 61  LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL--------------- 105
           LA+AANQ+TNYMGT YILSI++A+LAD + GR K V+ISG +EFL               
Sbjct: 63  LADAANQLTNYMGTGYILSILMAILADTYFGRVKTVIISGCLEFLALILLMIQAHYPKLK 122

Query: 106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQ 165
           PPPCN+FD  + C+ +EG  A +L++ALY++ATGTAGIKAALP +GADQFDEKDP EA Q
Sbjct: 123 PPPCNMFDKQSHCETVEGKSAVVLYIALYILATGTAGIKAALPSHGADQFDEKDPKEAMQ 182

Query: 166 MSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQ 225
           MSSFFN L L +C+GGA+S+TLIVWIQD KGWD G G+S+ A+F + +IF AG+PLYR  
Sbjct: 183 MSSFFNKLLLGLCLGGAVSLTLIVWIQDYKGWDWGLGVSAAAMFFSVVIFVAGMPLYRIH 242

Query: 226 VVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDK 285
           +V GSS +++I+QVYVAAIRNRKL LPED   LYEI  DKE A+E +FLPHR+I+RFLDK
Sbjct: 243 IVSGSSTILQILQVYVAAIRNRKLILPEDSTHLYEIERDKENAMEDDFLPHRNIYRFLDK 302

Query: 286 AAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQ 345
           AAIQ+T +  +   EA + WKLC VTQVENAKI+L M+PIFCCTI+MTLCLAQLQTFSIQ
Sbjct: 303 AAIQQTPSRQVGNPEASSAWKLCTVTQVENAKIVLSMVPIFCCTIIMTLCLAQLQTFSIQ 362

Query: 346 QGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVG 405
           QGLTMDT +T SF IPPASLPI+P+ F+IL VP+YD+IFVPFA K TG PTGITHLQRVG
Sbjct: 363 QGLTMDTKLTNSFSIPPASLPIIPVSFIILIVPIYDKIFVPFARKFTGIPTGITHLQRVG 422

Query: 406 VGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFT 465
           VGLVLS ISMA+AA+ EV RK VARDHNMLDA PV QPLPISTFWLS QFFIFGIAD+FT
Sbjct: 423 VGLVLSSISMAVAALVEVKRKGVARDHNMLDATPVSQPLPISTFWLSFQFFIFGIADLFT 482

Query: 466 YVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNN 525
           YVGLLEFFYSEAPK +KS+STCFLW SMALGYF STI+V IVN AT GIT+SGGWL GNN
Sbjct: 483 YVGLLEFFYSEAPKALKSVSTCFLWSSMALGYFLSTIIVKIVNRATEGITRSGGWLVGNN 542

Query: 526 INRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQ 561
           INRNHLNLF+W+LS LS INF +Y+F++ +Y YR Q
Sbjct: 543 INRNHLNLFYWMLSILSLINFFIYVFVAKKYKYRNQ 578

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528360|ref|XP_003532772.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max]

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/577 (69%), Positives = 465/577 (80%), Gaps = 16/577 (2%)

Query: 1   ENLELV-EGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHL 59
           E  ELV +GKVDWKGR A+K+KHGG+K SLLIL AF  EN+AT++L VN V+YF G++H 
Sbjct: 17  EKAELVVDGKVDWKGRRALKHKHGGMKVSLLILGAFAVENMATLSLAVNFVSYFTGIMHY 76

Query: 60  DLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL-------------- 105
           +LA+AAN VT+YMG SY+LSIVVA++AD +IGR+K+V+ISG +E L              
Sbjct: 77  ELADAANIVTDYMGVSYMLSIVVAVVADTWIGRYKSVVISGFIESLGLALLTVQAHMGSL 136

Query: 106 -PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEAR 164
            PP CNV+   A C K+ G   A  F++LYL+A G+AG+KA+LP +GADQFDE+DP EA 
Sbjct: 137 TPPICNVYVKDAHCAKLSGKQEAFFFISLYLLAFGSAGLKASLPSHGADQFDERDPKEAM 196

Query: 165 QMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRF 224
           QMSSFFN L LAVCIGGA+S+T  V+IQD  GWD GFG+S+ A+ L TI+FA GLPLYR 
Sbjct: 197 QMSSFFNGLLLAVCIGGAVSLTFNVYIQDRYGWDWGFGISTFAIVLGTILFAFGLPLYRI 256

Query: 225 QVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLD 284
            V    + +IEIIQVYVAAIRNR L LPEDP+ELYEI  DKEAA+E E  PHRDIFRFLD
Sbjct: 257 HVAHTKNGIIEIIQVYVAAIRNRNLSLPEDPIELYEIEQDKEAAMEIEHQPHRDIFRFLD 316

Query: 285 KAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSI 344
           KAAIQ+ S    E  E PNPWKLCRVTQVENAKIIL M+PIFCC+I+MTLCLAQLQTFS+
Sbjct: 317 KAAIQRKSDVQPENQETPNPWKLCRVTQVENAKIILSMLPIFCCSIIMTLCLAQLQTFSV 376

Query: 345 QQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRV 404
           QQG TMDT +T  F+IPPASLPI+P+ F+I+ VP YDRI VPF  K TG PTGITHLQR+
Sbjct: 377 QQGSTMDTRITKHFNIPPASLPIIPVGFLIIIVPFYDRICVPFLRKFTGIPTGITHLQRI 436

Query: 405 GVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMF 464
           GVGL+LSCISMAIAAI EV RK VARDHNMLDA+PV QPLP+S FWL+ Q+FIFGIADMF
Sbjct: 437 GVGLILSCISMAIAAIIEVKRKGVARDHNMLDALPVKQPLPLSIFWLAFQYFIFGIADMF 496

Query: 465 TYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGN 524
           TYVGLLEFFYSEAPKG+KS STCFLWCSMALGYF S+ILV IVNSAT+ IT SGGWLAGN
Sbjct: 497 TYVGLLEFFYSEAPKGLKSTSTCFLWCSMALGYFLSSILVKIVNSATKNITSSGGWLAGN 556

Query: 525 NINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQ 561
           NINRNHLNLF+  LS LS INF VYLF+S RY YRPQ
Sbjct: 557 NINRNHLNLFYLFLSILSLINFFVYLFVSKRYKYRPQ 593

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447051|ref|XP_003593801.1| Peptide transporter PTR1 [Medicago truncatula] gi|355482849|gb|AES64052.1| Peptide transporter PTR1 [Medicago truncatula]

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/578 (66%), Positives = 458/578 (79%), Gaps = 19/578 (3%)

Query: 2   NLELVEG-KVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLD 60
            L+LV+G KVDWKGR A+K+K+GG+K +LL+L   G ENLAT +L VN V YF G++H  
Sbjct: 14  ELQLVDGNKVDWKGRSALKFKYGGMKAALLMLVTLGLENLATFSLAVNSVPYFMGIMHYQ 73

Query: 61  LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL--------------- 105
           L +AAN +TNYMG SYILSI+VA++AD +IGR+K+VL SG  EFL               
Sbjct: 74  LEDAANMLTNYMGVSYILSILVAIVADTWIGRYKSVLFSGFFEFLGLALLTVQAHYPSLK 133

Query: 106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQ 165
           P  CNV D T  CK       A+LF+ LYL+A G+AG KAALP +GADQFDE DP E ++
Sbjct: 134 PKECNVNDITVHCKTPSRGQEAILFIGLYLLAFGSAGTKAALPSHGADQFDESDPKEEKK 193

Query: 166 MSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQ 225
           MS+FFN+L LAVC+GGA+S+T IVWIQ NKGWD GFG+ ++A+FL T+IFAAGLPLYR Q
Sbjct: 194 MSTFFNVLLLAVCMGGAVSLTFIVWIQINKGWDWGFGIGTIAIFLGTVIFAAGLPLYRIQ 253

Query: 226 VVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDK 285
           V  G+SVL+EIIQVYVAAIRNR L LPEDP ELYEI  DKEA+ E EFLPHRDIFRFLDK
Sbjct: 254 VATGNSVLLEIIQVYVAAIRNRNLHLPEDPKELYEIEQDKEASEEIEFLPHRDIFRFLDK 313

Query: 286 AAIQKTSTENLEITEAPN--PWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFS 343
           AAI          +EAP+  PWKLCRVTQVENAKI+L M+PIFCCTI+MTLCLAQLQTFS
Sbjct: 314 AAIDSKPDMQSGKSEAPSTSPWKLCRVTQVENAKILLSMVPIFCCTIIMTLCLAQLQTFS 373

Query: 344 IQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQR 403
           I+QG TMDT VT  FHIPPASLP +PI+F+I+ VP+YDRIFVP   K TG PTG+THLQR
Sbjct: 374 IEQGYTMDTKVTKHFHIPPASLPFIPIMFLIILVPIYDRIFVPVIRKFTGIPTGVTHLQR 433

Query: 404 VGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADM 463
           +GVGL+L+ +SMA+A+I EV RK VA D+NMLDA+PV QPLPISTFWLS Q+FIFGIAD+
Sbjct: 434 IGVGLILASVSMAVASIIEVKRKRVANDNNMLDALPVYQPLPISTFWLSFQYFIFGIADI 493

Query: 464 FTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAG 523
           FTY+GLL+FFYSEAPKG+KS STCFLW SMALGYF STI+V  +N AT+  T+SGGWL G
Sbjct: 494 FTYIGLLQFFYSEAPKGLKSTSTCFLWTSMALGYFLSTIVVKCINGATKH-TKSGGWLIG 552

Query: 524 NNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQ 561
           NNINRNHLNLF+  LS +S INF VYLF+S RY YRPQ
Sbjct: 553 NNINRNHLNLFYLFLSIVSLINFFVYLFVSKRYKYRPQ 590

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557777|ref|XP_003547187.1| PREDICTED: nitrate transporter 1.2-like [Glycine max]

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/582 (67%), Positives = 462/582 (79%), Gaps = 20/582 (3%)

Query: 7   EGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAAN 66
           E KVDWKGR A+K+K+GG+  S+LILA  GFENL T +L VN V YF+G++H  + +AAN
Sbjct: 21  ENKVDWKGRRALKFKYGGMCASVLILAMIGFENLGTFSLAVNSVPYFSGIMHYSIPDAAN 80

Query: 67  QVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL---------------PPPCNV 111
            +TNYMGT YIL+I VA+LAD +IGR+++VLISG  EF+               PP CN+
Sbjct: 81  MLTNYMGTGYILAIPVAVLADTWIGRYRSVLISGVFEFVGLALLTAQAHYPSLKPPLCNI 140

Query: 112 FDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFN 171
           +D TA CK   G   ALLF+ LYL+A GTAG+KAALP +GADQFDEKDP E R+MS+FFN
Sbjct: 141 YDITAHCKTPSGGQEALLFIGLYLLAFGTAGVKAALPSHGADQFDEKDPREERRMSTFFN 200

Query: 172 LLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSS 231
            L LA+C GGA+S+T IVWIQ NKGWD GFG+ ++A+FL  +IFAAGLPLYRF+V QG++
Sbjct: 201 TLLLAICFGGAVSLTFIVWIQINKGWDWGFGIGTIAIFLGIVIFAAGLPLYRFRVGQGTN 260

Query: 232 VLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKT 291
              EIIQVYVAAIRNR L LPEDP ELYEI  DKEAA E EFLPHRD  RFLD+AAIQ  
Sbjct: 261 AFNEIIQVYVAAIRNRNLPLPEDPTELYEIEQDKEAAEEIEFLPHRDTLRFLDRAAIQ-- 318

Query: 292 STENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMD 351
               ++  +  +PWKLCRVTQVENAKI+LGMIPIFCCTI+MTLCLAQLQTFSIQQG TMD
Sbjct: 319 IKHGVQSEKPSSPWKLCRVTQVENAKIVLGMIPIFCCTIIMTLCLAQLQTFSIQQGYTMD 378

Query: 352 TSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLS 411
           T+ T  FHIPPASLPI+P+ F+I+ VP+YD IFVP   KITG PTG+THLQR+GVGLVLS
Sbjct: 379 TTFTKHFHIPPASLPIIPVSFLIIIVPIYDFIFVPVMRKITGIPTGVTHLQRIGVGLVLS 438

Query: 412 CISMAIAAIFEVIRKDVARDHNMLDAIPVVQ-PLPISTFWLSIQFFIFGIADMFTYVGLL 470
           CISMA+A++ EV RK VARD+NMLDA+P++  PLPISTFWLS Q+FIFGIADMFTYVGLL
Sbjct: 439 CISMAVASVIEVKRKRVARDNNMLDAVPILMPPLPISTFWLSFQYFIFGIADMFTYVGLL 498

Query: 471 EFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNH 530
           +FFYSEAPKG+KS STCFLW SMALGYF STI+V  VN AT+ IT SGGWLAGNNINRNH
Sbjct: 499 QFFYSEAPKGLKSTSTCFLWSSMALGYFASTIVVKSVNGATKHITSSGGWLAGNNINRNH 558

Query: 531 LNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSV--GGTACK 570
           LNLF+  LS +S INF +YL +S RY YR Q+ +  GG + K
Sbjct: 559 LNLFYLFLSIVSLINFFIYLLVSMRYKYRSQSPLVPGGNSKK 600

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546534|ref|XP_003541681.1| PREDICTED: nitrate transporter 1.2-like [Glycine max]

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/586 (67%), Positives = 466/586 (79%), Gaps = 21/586 (3%)

Query: 2   NLELV-EGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLD 60
            +ELV E KVDWKGR A+K+K+GG+  S+LILA  GFENL T +L VN V YF+G++H  
Sbjct: 15  EIELVDENKVDWKGRQALKFKYGGMSASVLILAMIGFENLGTFSLAVNSVPYFSGIMHYS 74

Query: 61  LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL--------------- 105
           + +AAN +TNYMGT YIL+I VA+LAD +IGR+++VLISG  EFL               
Sbjct: 75  IPDAANMLTNYMGTGYILAIPVAVLADTWIGRYRSVLISGVFEFLGLALLTAQAHYPSLK 134

Query: 106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQ 165
           PP CN++D TA C+   G   ALLF+ LYL+A G+AG+KAALP +GADQFDEKDP EAR 
Sbjct: 135 PPLCNIYDITAHCETPSGGQEALLFIGLYLLAFGSAGVKAALPSHGADQFDEKDPREARL 194

Query: 166 MSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQ 225
           MS+FFN L LA+C+GGA S+T IVWIQ NKGWD GFG+ ++A+FL  ++FAAGLPLYRF+
Sbjct: 195 MSTFFNTLLLAICLGGAFSLTFIVWIQINKGWDWGFGIGTIAIFLGIVLFAAGLPLYRFR 254

Query: 226 VVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDK 285
           V QG++  IEIIQVYVA IRNR L LPEDP+ELYEI  DKEAA E EFLPHRD  RFLD+
Sbjct: 255 VGQGTNAFIEIIQVYVATIRNRNLPLPEDPIELYEIEQDKEAAEEIEFLPHRDTLRFLDR 314

Query: 286 AAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQ 345
           AAIQ    + ++  + P+PWKLCRVTQVENAKI+LGM PIFCCTI+MTLCLAQLQTFSIQ
Sbjct: 315 AAIQ--IKQGVQSEKPPSPWKLCRVTQVENAKIVLGMTPIFCCTIIMTLCLAQLQTFSIQ 372

Query: 346 QGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVG 405
           QG TMDT+ T  FHIPPASLPI+PI F+I+ +P+YD IFVP   KITG PTG+THLQR+G
Sbjct: 373 QGYTMDTTFTKHFHIPPASLPIIPISFLIIIMPIYDFIFVPVMRKITGIPTGVTHLQRIG 432

Query: 406 VGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQ-PLPISTFWLSIQFFIFGIADMF 464
           VGLVLSCISMA+A+I EV RK VARD+NMLDA+P++  PLPISTFWLS Q+FIFGIADMF
Sbjct: 433 VGLVLSCISMAVASIIEVKRKRVARDNNMLDAVPILMPPLPISTFWLSFQYFIFGIADMF 492

Query: 465 TYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGN 524
           TYVGLL+FFYSEAPKG+KS STCFLW SMALGYF STI+V  VN AT+ IT SGGWLAGN
Sbjct: 493 TYVGLLQFFYSEAPKGLKSTSTCFLWSSMALGYFASTIVVKCVNGATKHITSSGGWLAGN 552

Query: 525 NINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSVGGTACK 570
           NINRNHLNLF+  LS +S INF +YL +S RY YR Q   GG + K
Sbjct: 553 NINRNHLNLFYLFLSIVSLINFFIYLIVSMRYKYRSQP--GGNSKK 596

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078986|ref|XP_002305708.1| predicted protein [Populus trichocarpa] gi|222848672|gb|EEE86219.1| predicted protein [Populus trichocarpa]

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/539 (70%), Positives = 452/539 (83%), Gaps = 18/539 (3%)

Query: 40  LATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLIS 99
           +ATI+L VN VTYFNGV+H  +A+AAN VTNYMG SYILSIV A+LAD   GR +  +IS
Sbjct: 1   MATISLAVNFVTYFNGVMHFQIADAANMVTNYMGVSYILSIVAAVLADTLFGRHRTAVIS 60

Query: 100 GSVEFL---------------PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIK 144
           G +E +               PPPCN+ DPTA C+K+ G +  LLFV+L+++A G++G K
Sbjct: 61  GCLELMGLSLLAFQAHYAKLKPPPCNILDPTAHCEKVGGGNIVLLFVSLFVLAAGSSGTK 120

Query: 145 AALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLS 204
           A++P +GADQFDEKDP E  QMSS+FN + LAVC+G A+S+T  VWIQDNKGWD GFG+ 
Sbjct: 121 ASVPSHGADQFDEKDPKELIQMSSYFNFVLLAVCLGAAVSLTFFVWIQDNKGWDWGFGVG 180

Query: 205 SVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMD 264
           ++++ LA I+F AGLP++R  VVQGSS ++EI+QVYVAA RNRKL+LPEDP++LYEIN D
Sbjct: 181 AISMLLAVIVFIAGLPMHRIHVVQGSSTVVEILQVYVAAFRNRKLQLPEDPLDLYEINKD 240

Query: 265 KEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIP 324
           KEAAIE E LPHRD  RFLDKAAIQ TSTE  + +EAPNPWKLCRVTQVENAKI+L ++P
Sbjct: 241 KEAAIEAESLPHRDTLRFLDKAAIQ-TSTE--KFSEAPNPWKLCRVTQVENAKILLSILP 297

Query: 325 IFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIF 384
           +F CTI+MTLCLAQLQTFSIQQGLTMDTS+T SF+IPPASLPI+P++F+I+ VP+YDR+ 
Sbjct: 298 VFSCTIIMTLCLAQLQTFSIQQGLTMDTSITKSFNIPPASLPIIPVIFLIILVPLYDRLV 357

Query: 385 VPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPL 444
           VPFA K TG PTGITHLQR+GVGL+LS ISMA AA+ EV RKDVARDHNMLDAIPV+QPL
Sbjct: 358 VPFARKFTGLPTGITHLQRIGVGLILSSISMASAALMEVKRKDVARDHNMLDAIPVLQPL 417

Query: 445 PISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILV 504
           PIST W+SIQFFIFGIADMFTYVGLLEFFYSEAPKG+KS+STCFLWCSMALGYF STILV
Sbjct: 418 PISTLWISIQFFIFGIADMFTYVGLLEFFYSEAPKGLKSISTCFLWCSMALGYFLSTILV 477

Query: 505 NIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTS 563
           NIVN  T+G T+SGGWLAGNNINRN+LNLF+WLLS LSF+NF VYLF++ RY YRPQ S
Sbjct: 478 NIVNGVTKGSTKSGGWLAGNNINRNNLNLFYWLLSILSFLNFCVYLFVARRYTYRPQNS 536

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510991|ref|XP_003524215.1| PREDICTED: nitrate transporter 1.2-like [Glycine max]

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/573 (67%), Positives = 467/573 (81%), Gaps = 16/573 (2%)

Query: 5   LVEGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEA 64
           +V GKVDWKGR A+K+KHGG+K SLL+LAAFG ENLAT++L VN V+YF G++H +LA+A
Sbjct: 45  VVHGKVDWKGRKALKHKHGGMKVSLLVLAAFGMENLATLSLAVNFVSYFTGIMHYELADA 104

Query: 65  ANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL---------------PPPC 109
           AN VTNYMG +Y+LSIVVA+LAD +IGR+K+V+ISG VE L               PP C
Sbjct: 105 ANMVTNYMGVNYMLSIVVAVLADTWIGRYKSVVISGIVESLGLALLTIQARVGSLTPPIC 164

Query: 110 NVFD-PTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSS 168
           ++++   A C+K+ G   A LF+ LYL+A G+AG+KA+LP +GADQFDE+DP EA QMSS
Sbjct: 165 DLYNVRDAHCEKLSGKQEAFLFIGLYLLAFGSAGLKASLPSHGADQFDERDPKEAMQMSS 224

Query: 169 FFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQ 228
           FFN LFLA+C+GGA+S+T  V+IQDN GW  GFG+S+VA+ L TIIFA+GLPLYR     
Sbjct: 225 FFNGLFLALCVGGAVSLTFNVYIQDNNGWIWGFGISTVAIVLGTIIFASGLPLYRIHAAH 284

Query: 229 GSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAI 288
            ++ ++EIIQVYVAAIRNR L LP +P++LYEI  DKEAA+E E+ PHRDIFRFLDKAAI
Sbjct: 285 STNGILEIIQVYVAAIRNRNLPLPANPIQLYEIQQDKEAAVEIEYQPHRDIFRFLDKAAI 344

Query: 289 QKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGL 348
           +  S E  E  E PNPWKLCRVTQVENAKIIL M+PIFCC+I+MTLCLAQLQTFSIQQG 
Sbjct: 345 KSRSDEQPENQETPNPWKLCRVTQVENAKIILSMLPIFCCSIIMTLCLAQLQTFSIQQGS 404

Query: 349 TMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGL 408
           TM+T +   F+IPPAS+PI+P+ F+I+ VP YDRI VPF  K TG PTGITHLQR+GVGL
Sbjct: 405 TMNTRIAKHFNIPPASIPIIPVAFLIVFVPFYDRICVPFLRKFTGIPTGITHLQRIGVGL 464

Query: 409 VLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVG 468
           +LS ISMA+AAI EV RK VARD+NML+A+PV+QPLPIS FW+S Q+F+FGIADMFTYVG
Sbjct: 465 ILSSISMAVAAIIEVKRKGVARDNNMLNALPVLQPLPISIFWISFQYFVFGIADMFTYVG 524

Query: 469 LLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINR 528
           LLEFFYSEAPK +KS +TCFLWC+MALGYF S+I+V IVNSAT+ IT SGGWL GNNINR
Sbjct: 525 LLEFFYSEAPKSLKSTATCFLWCAMALGYFLSSIMVKIVNSATKNITASGGWLQGNNINR 584

Query: 529 NHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQ 561
           NHLNLF+ LLS LS INF VYLF+S RY YRPQ
Sbjct: 585 NHLNLFYLLLSILSLINFFVYLFVSKRYKYRPQ 617

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	578
TAIR|locus:2025886	591	AT1G59740 [Arabidopsis thalian	0.932	0.912	0.408	1.4e-110
TAIR|locus:2006907	601	AT1G33440 [Arabidopsis thalian	0.918	0.883	0.392	5.8e-105
TAIR|locus:2170683	589	AT5G62730 [Arabidopsis thalian	0.929	0.911	0.396	4.9e-101
TAIR|locus:2205769	567	AT1G27040 [Arabidopsis thalian	0.903	0.920	0.385	4.4e-100
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.930	0.943	0.397	3.5e-98
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.941	0.954	0.376	6.6e-97
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.937	0.926	0.383	1.4e-96
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.906	0.908	0.396	3.7e-96
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.922	0.903	0.376	3e-94
TAIR|locus:2196739	585	NRT1:2 "AT1G69850" [Arabidopsi	0.863	0.852	0.384	3.9e-92

TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)]

 Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
 Identities = 235/575 (40%), Positives = 347/575 (60%)

Query:     2 NLELVEGK-VDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLD 60
             N EL E + VDW+GRP+   KHGG++ +L +L    FE +   A+G NL+TY    +H  
Sbjct:    21 NWELAEEESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFP 80

Query:    61 LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE---FL------------ 105
             L++AAN VTN++GT +I +++   L+DAF+G F  ++I G VE   F+            
Sbjct:    81 LSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLK 140

Query:   106 PPPCN-VFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEAR 164
             PP CN + D T  C++ +G  A + F+ALYL+A G+  +K  +  +GADQF +  P +++
Sbjct:   141 PPKCNPLIDQT--CEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSK 198

Query:   165 QMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRF 224
             ++SS+FN  + A  +G  I++TL+VW+Q + G D GFG+S+ A+ +  I   +G   +R 
Sbjct:   199 RLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRN 258

Query:   225 QVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLD 284
             +  +  S+   I  V VAAI  RKL  P DP  L+  +      + +  LPH   FRFLD
Sbjct:   259 KRPR-RSIFTPIAHVIVAAILKRKLASPSDPRMLHGDHHVANDVVPSSTLPHTPRFRFLD 317

Query:   285 KAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSI 344
             KA I+   T   E     +PW+LC VTQVE  K ++ ++PIF  TIV    LAQLQTFS+
Sbjct:   318 KACIKIQDTNTKE-----SPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSV 372

Query:   345 QQGLTMDTSVTTSFHXXXXXXXXXXXXFMILAVPVYDRIFVPFAGKITGNPTGITHLQRV 404
             QQG +M+T ++ SFH             +I  VP+YD   VPFA K+TG+ +GI  L R+
Sbjct:   373 QQGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRI 432

Query:   405 GVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMF 464
             G+GL LS  SM  AA+ E  R    RD ++LD         +S FW++ QF IFGI++MF
Sbjct:   433 GIGLFLSTFSMVSAAMLEKKR----RDSSVLDG------RILSIFWITPQFLIFGISEMF 482

Query:   465 TYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGN 524
             T VGL+EFFY ++ KG++S      +CS + G++FS++LV++VN  T     S GWL  N
Sbjct:   483 TAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGEN 542

Query:   525 NINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYR 559
             ++N++ L+LF+WLL+ LS +NF  YLF S R+N +
Sbjct:   543 DLNKDRLDLFYWLLAVLSLLNFLSYLFWS-RWNIK 576

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2006907 AT1G33440 [Arabidopsis thaliana (taxid:3702)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 224/571 (39%), Positives = 339/571 (59%)

Query:    10 VDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVT 69
             VD++GRP    KHGG + +L +L    FE +A  A+G NL+TY    +H  L+++AN VT
Sbjct:    27 VDFRGRPCRPSKHGGTRAALFVLGFQAFEMMAIAAVGNNLITYVFNEMHFPLSKSANLVT 86

Query:    70 NYMGTSYILSIVVALLADAFIGRFKAVLISGSVE---FL------------PPPCNVFDP 114
             N++GT ++LS++   L+D+++G F+ +L+ G +E   F+            PP CN+   
Sbjct:    87 NFIGTVFLLSLLGGFLSDSYLGSFRTMLVFGVIEISGFILLSVQAHLPELRPPECNMKST 146

Query:   115 TAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLF 174
             T  C +  G  AA L+ AL L+A G+  +K  +  +GA+QF  KD    R++SSFFN  +
Sbjct:   147 TIHCVEANGYKAATLYTALCLVALGSGCLKPNIISHGANQFQRKD---LRKLSSFFNAAY 203

Query:   175 LAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLI 234
              A  +G  I++TL+VW+Q + G D GFG+S+  +    I   AG   YR +   GS +  
Sbjct:   204 FAFSMGQLIALTLLVWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSFYRNKPPSGS-IFT 262

Query:   235 EIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTE 294
              I QV+VAAI  RK   P +P  +++ + D    +  + L H + FRFLDKA I KT  +
Sbjct:   263 PIAQVFVAAITKRKQICPSNPNMVHQPSTD---LVRVKPLLHSNKFRFLDKACI-KTQGK 318

Query:   295 NLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSV 354
              +E     +PW+LC + QV   KI+L +IPIF CTI+    LAQLQTFS+QQG +M+T +
Sbjct:   319 AME-----SPWRLCTIEQVHQVKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHI 373

Query:   355 TTSFHXXXXXXXXXXXXFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCIS 414
             T +F              +I  VP+Y+  FVP A K+TGN +GI+ LQR+G GL L+  S
Sbjct:   374 TKTFQIPPASLQAIPYIILIFFVPLYETFFVPLARKLTGNDSGISPLQRIGTGLFLATFS 433

Query:   415 MAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFY 474
             M  AA+ E  R++   + N++          +S FW++ QF IFG+++MFT VGL+EFFY
Sbjct:   434 MVAAALVEKKRRESFLEQNVM----------LSIFWIAPQFLIFGLSEMFTAVGLVEFFY 483

Query:   475 SEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSAT--RGITQSGGWLAGNNINRNHLN 532
              ++ + ++S  T   +CS + G++ S++LV+ VN  T   G     GWL  N++N++ L+
Sbjct:   484 KQSSQSMQSFLTAMTYCSYSFGFYLSSVLVSTVNRVTSSNGSGTKEGWLGDNDLNKDRLD 543

Query:   533 LFFWLLSALSFINFSVYLFMSSRYNYRPQTS 563
              F+WLL++LSFINF  YLF S  Y+  P  +
Sbjct:   544 HFYWLLASLSFINFFNYLFWSRWYSCDPSAT 574

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2170683 AT5G62730 [Arabidopsis thaliana (taxid:3702)]

 Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
 Identities = 221/558 (39%), Positives = 324/558 (58%)

Query:     8 GKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQ 67
             G VDW+ RPA++ +HGG+  +  +L     ENLA +A   NLV Y +  +    + AAN 
Sbjct:    43 GYVDWRSRPALRGRHGGMLAASFVLVVEVLENLAFLANASNLVLYLSTKMGFSPSGAANA 102

Query:    68 VTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAA 127
             VT +MGT++ L+++   LADAF   F   L+S ++EFL     V    A     E     
Sbjct:   103 VTAFMGTAFFLALLGGFLADAFFTTFHIYLVSAAIEFLG--LMVLTVQAHEHSTEPWSRV 160

Query:   128 LLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTL 187
              LFV LYL+A G  GIK +LPP+GA+QFDE+     RQ S FFN    ++  G  I+VT+
Sbjct:   161 FLFVGLYLVALGVGGIKGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVTV 220

Query:   188 IVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAI--R 245
             +VW++DNKGW  GFG+S+ A+ ++  +F AG  +YR +V  GS +   + +V  AA+  +
Sbjct:   221 VVWLEDNKGWSYGFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITT-LFKVLTAALYAK 279

Query:   246 NRKLELPEDPMELYEINMDKEAAIETEFLPHRDIF--RFLDKAAIQKTSTENLEITEAPN 303
              +K       +  +  N D + ++  +     D F   FL +   ++   E+L     P 
Sbjct:   280 YKKRRTSRIVVTCHTRN-DCDDSVTKQNCDGDDGFLGSFLGEVVRER---ESL-----PR 330

Query:   304 PWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHXXXX 363
             P + C   QV++ KI++ ++PIF  TI++  CLAQL TFS+QQ  TM+T +  SF     
Sbjct:   331 PLR-CTEEQVKDVKIVIKILPIFMSTIMLNCCLAQLSTFSVQQASTMNTKLG-SFTVPPA 388

Query:   364 XXXXXXXXFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEV 423
                     FM++  P Y+ + +P A K T   TGITHLQR+G GLVLS ++MA+AA+ E 
Sbjct:   389 ALPVFPVVFMMILAPTYNHLLLPLARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVET 448

Query:   424 IRKDVARD--HNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGI 481
              RK V      N   +     PLPI+  W++IQ+   G AD+FT  G++EFF++EAP  +
Sbjct:   449 KRKHVVVSCCSNNNSSSYSSSPLPITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTM 508

Query:   482 KSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSAL 541
             +SL+T   W S+A+GY+FS++LV+ VN  T G+     WL G N+N+ HL  F+WL+  L
Sbjct:   509 RSLATSLSWASLAMGYYFSSVLVSAVNFVT-GLNHHNPWLLGENLNQYHLERFYWLMCVL 567

Query:   542 SFINFSVYLFMSSRYNYR 559
             S INF  YLF +SRY YR
Sbjct:   568 SGINFLHYLFWASRYVYR 585

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)]

 Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
 Identities = 215/557 (38%), Positives = 328/557 (58%)

Query:     7 EGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAAN 66
             EG  DW+ + A++ +HGG+  +  +LA    ENLA +A   NLV Y    +H+ LA +++
Sbjct:    13 EGYADWRNKAALRGRHGGMLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSLARSSS 72

Query:    67 QVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL---------------PPPCNV 111
             +VT +M T+++L+++   LADAF   F   LIS S+EFL               PPPC  
Sbjct:    73 EVTTFMATAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMPPPCKS 132

Query:   112 FDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFN 171
                   C+ + GS AA LFV LYL++ G  GIK +LP +GA+QFDE  P   +Q S+FFN
Sbjct:   133 -SAALRCEVVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFN 191

Query:   172 LLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSS 231
                  +  G  ++VT +VWI+DNKGW+ GFG+S++++FL+ ++F  G   Y+ ++ +GS 
Sbjct:   192 YYVFCLSCGALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSP 251

Query:   232 VLIEIIQVYVAA-IRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQK 290
              L  I +V +AA I +   +   +     E+  + E    ++ L +      L+KA   K
Sbjct:   252 -LTTIFKVLLAASIVSCSSKTSSNHFTSREVQSEHEEKTPSQSLTNS--LTCLNKAIEGK 308

Query:   291 TSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTM 350
             T           + W  C V QVE+ KI+L M+PIF CTI++  CLAQL T+S+ Q  TM
Sbjct:   309 TH----------HIWLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATM 358

Query:   351 DTSVTTSFHXXXXXXXXXXXXFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVL 410
             +  +  +F+            FM++  P YD + +PFA K+T +  GITHLQR+GVGLVL
Sbjct:   359 NRKIV-NFNVPSASLPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVL 417

Query:   411 SCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLL 470
             S ++MA+AA+ E+ RK VAR+  +LD+    + LPI+  W+++Q+   G AD+FT  GLL
Sbjct:   418 SIVAMAVAALVELKRKQVAREAGLLDS---EETLPITFLWIALQYLFLGSADLFTLAGLL 474

Query:   471 EFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNH 530
             EFF++EAP  ++SL+T   W S+ALGY+ S+++V IVN  T+   QS       N NR  
Sbjct:   475 EFFFTEAPSSMRSLATSLSWASLALGYYLSSVMVPIVNRVTKSAGQSPWLGEKLNRNRLD 534

Query:   531 LNLFFW-LLSALSFINF 546
             L  +   +LS ++F+++
Sbjct:   535 LFYWLMCVLSVVNFLHY 551

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
 Identities = 226/569 (39%), Positives = 318/569 (55%)

Query:     7 EGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAAN 66
             +G VD    PA K K G  K    IL     E LA   +G NLV Y    L+   A AAN
Sbjct:    10 DGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAAN 69

Query:    67 QVTNYMGTSYILSIVVALLADAFIGR------FKAVLISG--------SVEFLPPP-CNV 111
              VTN+ GT YI  ++ A +ADA++GR      F  + +SG        SV  L P  CN 
Sbjct:    70 NVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNA 129

Query:   112 FDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFN 171
              D    C     S  A+ FVALY+IA GT GIK  +  +GADQFDE D  E  + SSFFN
Sbjct:   130 -DT---CHP-NSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFN 184

Query:   172 LLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSS 231
               + ++ +G  I+ T++VWIQ N GW  GFG+ +VA+ +A   F  G   YR Q   G S
Sbjct:   185 WFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQR-PGGS 243

Query:   232 VLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIE-TEFLPHRDIFRFLDKAAIQK 290
              L  I QV VAA R   +++PED   L+E   D E+ I+ +  L H D  +F DKAA++ 
Sbjct:   244 PLTRIFQVIVAAFRKISVKVPEDKSLLFE-TADDESNIKGSRKLVHTDNLKFFDKAAVES 302

Query:   291 TSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTM 350
              S ++++  E  NPW+LC VTQVE  K I+ ++P++   IV     +Q+ T  + QG TM
Sbjct:   303 QS-DSIKDGEV-NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTM 360

Query:   351 DTSVTTSFHXXXXXXXXXXXXFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVL 410
             D  +  +F              ++   PVYD+  +P A K T N  G T LQR+G+GLV+
Sbjct:   361 DQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVV 420

Query:   411 SCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLL 470
             S  +M  A + EV+R D  + HN  D     + + +S FW   Q+ + G A++FT++G L
Sbjct:   421 SIFAMITAGVLEVVRLDYVKTHNAYDQ----KQIHMSIFWQIPQYLLIGCAEVFTFIGQL 476

Query:   471 EFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNH 530
             EFFY +AP  ++SL +     ++ALG + ST+LV +V   T+      GW+  +N+NR H
Sbjct:   477 EFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKK-NGKPGWIP-DNLNRGH 534

Query:   531 LNLFFWLLSALSFINFSVYLFMSSRYNYR 559
             L+ FF+LL+ LSF+NF VYL++S RY Y+
Sbjct:   535 LDYFFYLLATLSFLNFLVYLWISKRYKYK 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
 Identities = 214/568 (37%), Positives = 319/568 (56%)

Query:     7 EGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAAN 66
             +G +D   +PA K K G  K    IL     E LA   +  NL+ Y    ++++   A+ 
Sbjct:    11 DGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASK 70

Query:    67 QVTNYMGTSYILSIVVALLADAFIGR------FKAVLISGSVEFLPPPCNV--FDPTAG- 117
              V+N+ GT Y   ++ A +ADA++GR      F  + I+G +  L    +V    PT   
Sbjct:    71 SVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAG-MTLLTISASVPGLTPTCSG 129

Query:   118 --CKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFL 175
               C    G   A+ F+ALYLIA GT GIK  +  +GADQFD+ D  E    SSFFN  + 
Sbjct:   130 ETCHATAGQ-TAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYF 188

Query:   176 AVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIE 235
              + +G  I+ +++VWIQ N GW  G G+ +VA+ +A + F AG   YR Q   G S L  
Sbjct:   189 VINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQK-PGGSPLTR 247

Query:   236 IIQVYVAAIRNRKLELPEDPMELYEINMDKEAAI-ETEFLPHRDIFRFLDKAAIQKTSTE 294
             ++QV VA+ R  K+++PED   LYE N D E++I  +  L H  I  F DKAA++ T ++
Sbjct:   248 MLQVIVASCRKSKVKIPEDESLLYE-NQDAESSIIGSRKLEHTKILTFFDKAAVE-TESD 305

Query:   295 NLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSV 354
             N    ++ + WKLC VTQVE  K ++ ++PI+   IV     +Q+ T  + QG T+D  +
Sbjct:   306 NKGAAKSSS-WKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHM 364

Query:   355 TTSFHXXXXXXXXXXXXFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCIS 414
               +F              ++   PVYD++ VPFA K TG+  G T LQR+G+GLV+S  S
Sbjct:   365 GPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFS 424

Query:   415 MAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFY 474
             M  A I EV R +  + HN+ +     + +P++ FW   Q+F+ G A++FT++G LEFFY
Sbjct:   425 MVSAGILEVARLNYVQTHNLYNE----ETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFY 480

Query:   475 SEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLF 534
              +AP  ++SL +     ++A G + ST LV +V   TR   + G W+A  N+N  HL+ F
Sbjct:   481 DQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPG-WIA-KNLNNGHLDYF 538

Query:   535 FWLLSALSFINFSVYLFMSSRYNYRPQT 562
             FWLL+ LSF+NF VYL+++  Y Y+  T
Sbjct:   539 FWLLAGLSFLNFLVYLWIAKWYTYKKTT 566

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
 Identities = 220/574 (38%), Positives = 322/574 (56%)

Query:     7 EGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAAN 66
             +G VD+ G P +K K G  K    IL     E LA   +  NL+TY    LH     AA 
Sbjct:    27 DGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAAT 86

Query:    67 QVTNYMGTSYILSIVVALLADAFIGRF--------------KAVLISGSVEFLPPPCNVF 112
              VT + GT Y+  ++ A+LADA+ GR+               A+ +S SV  L P   + 
Sbjct:    87 NVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIG 146

Query:   113 DPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNL 172
             D    C     +  A+ F  LYLIA GT GIK  +  +GADQFD+ D  E  + +SFFN 
Sbjct:   147 D---FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNW 203

Query:   173 LFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSV 232
              + ++ IG  +S +L+VWIQ+N+GW  GFG+ +V + LA   F  G PLYRFQ   G S 
Sbjct:   204 FYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQK-PGGSP 262

Query:   233 LIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIE-TEFLPHRDIFRFLDKAAIQKT 291
             +  I QV VA+ R   +++PED   LYE   DK +AI  +  + H D  ++LDKAA+   
Sbjct:   263 ITRISQVVVASFRKSSVKVPEDATLLYE-TQDKNSAIAGSRKIEHTDDCQYLDKAAV--I 319

Query:   292 STENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMD 351
             S E  +  +  N W+LC VTQVE  KI++ M PI+   I+ +   AQ+ T  +QQG  M+
Sbjct:   320 SEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMN 379

Query:   352 TSVTTSFHXXXXXXXXXXXXFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLS 411
               +  SF              +I+ VP+YDR  VP A K TG   G T +QR+G+GL +S
Sbjct:   380 CKIG-SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVS 438

Query:   412 CISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLE 471
              + MA AAI E+IR  +A D  ++++     P+PIS  W   Q+FI G A++F ++G LE
Sbjct:   439 VLCMAAAAIVEIIRLHMANDLGLVES---GAPVPISVLWQIPQYFILGAAEVFYFIGQLE 495

Query:   472 FFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSG--GWLAGNNINRN 529
             FFY ++P  ++SL +     + ALG + S++++ +V   T   T++G  GW++ +N+N  
Sbjct:   496 FFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFT---TRNGQEGWIS-DNLNSG 551

Query:   530 HLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTS 563
             HL+ FFWLL+ LS +N +VY F ++RY  +  +S
Sbjct:   552 HLDYFFWLLAGLSLVNMAVYFFSAARYKQKKASS 585

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 223/562 (39%), Positives = 325/562 (57%)

Query:     6 VEGKVDWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAA 65
             V   VD+KGRPA K K GG  T+ LIL     E L+T+ + VNLVTY    +HL  + +A
Sbjct:     9 VADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSA 68

Query:    66 NQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL---------------PPPCN 110
             N VT++MGTS++L ++   LAD+F+GRFK + I  +++ L               PP C+
Sbjct:    69 NIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPPTCH 128

Query:   111 VFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFF 170
               +    C         +L+V+LYLIA GT G+K+++  +G+DQFD+KDP E   M+ FF
Sbjct:   129 HGE---ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185

Query:   171 NLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGS 230
             N  F  + +G  ++VT++V++QD  G    +G+ +V++ +A +IF  G   YR++  QGS
Sbjct:   186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245

Query:   231 SVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAI-- 288
              V ++I QV  AA R RK+ELP+  + LYE   D    I  E   H D F  LDKAAI  
Sbjct:   246 PV-VQIFQVIAAAFRKRKMELPQSIVYLYE---DNPEGIRIE---HTDQFHLLDKAAIVA 298

Query:   289 QKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGL 348
             +    + L+    PNPWKL  VT+VE  K+++ ++PI+  TI+     AQ+ TFS++Q  
Sbjct:   299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358

Query:   349 TMDTSVTTSFHXXXXXXXXXXXXFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGL 408
             TM  ++  SF              +++ + VYDR  +PF  K  G P G + LQR+ +GL
Sbjct:   359 TMRRNIG-SFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKP-GFSSLQRIAIGL 416

Query:   409 VLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVG 468
             VLS   MA AA+ E  R  VA+  +        + LPIS F L  QFF+ G  + F Y G
Sbjct:   417 VLSTAGMAAAALVEQKRLSVAKSSSQ-------KTLPISVFLLVPQFFLVGAGEAFIYTG 469

Query:   469 LLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINR 528
              L+FF +++PKG+K++ST     +++LG+F S+ LV+IV   T   T  G WLA +NIN 
Sbjct:   470 QLDFFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVG-WLA-DNINH 527

Query:   529 NHLNLFFWLLSALSFINFSVYL 550
               L+ F+WLL  LS INF VY+
Sbjct:   528 GRLDYFYWLLVILSGINFVVYI 549

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 214/569 (37%), Positives = 327/569 (57%)

Query:    11 DWKGRPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTN 70
             D++GRPA + K GG  ++ +IL     E L T+ +GVNLVTY  G +HL  A AAN VTN
Sbjct:    17 DFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTN 76

Query:    71 YMGTSYILSIVVALLADAFIGRFKAVLISGSVE---------------FLPPPCNVFDPT 115
             ++GTS++L ++   +AD F+GR+  + I  +++                 PP CN   PT
Sbjct:    77 FLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCN---PT 133

Query:   116 AG--CKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLL 173
                 C++  G    +L++ALYL A GT G+KA++  +G+DQFDE +P E  +M+ FFN  
Sbjct:   134 TSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRF 193

Query:   174 FLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVL 233
             F  + +G  ++VT++V++QD+ G   G+G+ + A+ LA  +F AG   YRF+ + GS  +
Sbjct:   194 FFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSP-M 252

Query:   234 IEIIQVYVAAIRNRKLELPEDPMELYEIN--MDKEAAIE-TEFLPHRDIFRFLDKAAIQK 290
              ++  V VAA RNRKLELP DP  LY+++  +  E +++  + LPH + FR LDKAAI+ 
Sbjct:   253 TQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIR- 311

Query:   291 TSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTM 350
                E    +   N W L  +T VE  K I+ M+PI+   I+     AQL T S+ Q  T+
Sbjct:   312 -DQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETL 370

Query:   351 DTSVTTSFHXXXXXXXXXXXXFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVL 410
             D S+  SF              ++L   VYDR+ +    K+   P G+  LQR+G+GL  
Sbjct:   371 DRSIG-SFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFF 429

Query:   411 SCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLL 470
               ++MA+AA+ E+ R   A  H      P V+ LP+  + L  Q+ I GI +   Y G L
Sbjct:   430 GSMAMAVAALVELKRLRTAHAHG-----PTVKTLPLGFYLLIPQYLIVGIGEALIYTGQL 484

Query:   471 EFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNH 530
             +FF  E PKG+K +ST  L  ++ALG+FFS++LV IV   T G  ++  W+A +++N+  
Sbjct:   485 DFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFT-G--KAHPWIA-DDLNKGR 540

Query:   531 LNLFFWLLSALSFINFSVYLFMSSRYNYR 559
             L  F+WL++ L  +NF ++L  S  Y Y+
Sbjct:   541 LYNFYWLVAVLVALNFLIFLVFSKWYVYK 569

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 201/523 (38%), Positives = 307/523 (58%)

Query:    48 NLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPP 107
             N VT F G   L LA     +++   +++ + ++ A +   F+G     + + +   +PP
Sbjct:    70 NDVTNFMGTAFL-LALLGGFLSDAFFSTFQIFLISASIE--FLGLIILTIQARTPSLMPP 126

Query:   108 PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMS 167
              C+   PT  C+++ GS AA+LFV LYL+A G  GIK +L  +GA+QFDE  P   +Q S
Sbjct:   127 SCD--SPT--CEEVSGSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRS 182

Query:   168 SFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVV 227
             +FFN     +  G  ++VT +VW++DNKGW+ GFG+S++A+F++ +IF +G   YR ++ 
Sbjct:   183 TFFNYFVFCLACGALVAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIP 242

Query:   228 QGSSVLIEIIQVYVAA-IR--------NRKLELPEDPMELYEINMDKEAAIETEFLPHRD 278
              GS  L  I++V +AA ++        N    +   P         KE   + E    R 
Sbjct:   243 CGSP-LTTILKVLLAASVKCCSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELEKPRQ 301

Query:   279 IFRFLDKAAIQKT-STENLEITEAPNPWKL-CRVTQVENAKIILGMIPIFCCTIVMTLCL 336
                   +A +  +    N    E P    L C V QVE+ KI+L M+PIF CTI++  CL
Sbjct:   302 EEALPPRAQLTNSLKVLNGAADEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIMLNCCL 361

Query:   337 AQLQTFSIQQGLTMDTSVTTSFHXXXXXXXXXXXXFMILAVPVYDRIFVPFAGKITGNPT 396
             AQL TFS+QQ  +M+T +  S              F+++  P+YD + +PFA K T   T
Sbjct:   362 AQLSTFSVQQAASMNTKIG-SLKIPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTET 420

Query:   397 GITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFF 456
             G+THLQR+GVGLVLS ++MA+AA+ E+ RK VA+D  +LD+    + LP++  W+++Q+ 
Sbjct:   421 GVTHLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDS---KETLPVTFLWIALQYL 477

Query:   457 IFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQ 516
               G AD+FT  GLLE+F++EAP  ++SL+T   W S+A+GY+ S+++V+IVNS T G + 
Sbjct:   478 FLGSADLFTLAGLLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNSIT-GSSG 536

Query:   517 SGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYR 559
             +  WL G +INR  L+ F+WL+  LS  NF  YLF + RY YR
Sbjct:   537 NTPWLRGKSINRYKLDYFYWLMCVLSAANFLHYLFWAMRYKYR 579

GO:0005215 "transporter activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009624 "response to nematode" evidence=IEP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0090440 "abscisic acid transporter activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H157	PTR19_ARATH	No assigned EC number	0.4123	0.9394	0.9282	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	578
pfam00854	372	pfam00854, PTR2, POT family	1e-66
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	3e-14
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	1e-13
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	6e-07
PRK09584	500	PRK09584, tppB, putative tripeptide transporter pe	7e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.003

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  220 bits (563), Expect = 1e-66
 Identities = 107/399 (26%), Positives = 167/399 (41%), Gaps = 31/399 (7%)

Query: 93  FKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGA 152
           FK +L+   +  +     +    A    +     AL ++ LYLIA GT GIK  +  +GA
Sbjct: 1   FKTILLGSIIYAIGHV--LLTLGAIPPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGA 58

Query: 153 DQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLAT 212
           DQFDE       +   FF+  + ++  G  I+  +  ++Q N G+  GFGL +V + LA 
Sbjct: 59  DQFDETQD---PRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLAL 115

Query: 213 IIFAAGLPLYRFQVVQGSSVLIEII-QVYVAAIRNRKLELPEDPMELYEINMDKEAAIET 271
           ++F  G   Y+ +   G S     I  +  AA +NRKL+LP+D   LY   ++K      
Sbjct: 116 LVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYW-ALEKYN---- 170

Query: 272 EFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIV 331
                    +         T    + I          +   V   + IL M+PI+   I+
Sbjct: 171 ---------KRSISQTKVHTRVAVIFIPLPKFWALFDQQGSVWLLQAILLMLPIWAFWIL 221

Query: 332 MTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKI 391
                 QL T  ++Q  TMD  +   F IPPAS      L +++ +P+ D +  P     
Sbjct: 222 PDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLL--- 278

Query: 392 TGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWL 451
                G+T  QR G+G+ +  ++  +AAI E  R   A    +      V   P+   W 
Sbjct: 279 -RLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTV---PLFILWS 334

Query: 452 SIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLW 490
             + FI G+       G LEF     P  + SL T    
Sbjct: 335 LPELFISGVG----LAGALEFAPDALPSSMMSLWTLLSA 369

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 75.6 bits (186), Expect = 3e-14
 Identities = 90/396 (22%), Positives = 161/396 (40%), Gaps = 85/396 (21%)

Query: 49  LVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLI---------- 98
           LV Y    L  +   A N    +    Y+  ++ AL+AD+++G+FK +L           
Sbjct: 10  LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69

Query: 99  ---SGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQF 155
               G+V  L  P +                AL  V L LIA GT GIK  +  +G DQF
Sbjct: 70  LASLGAVPSLGHPLHD---------------ALSLVGLALIALGTGGIKPCVSAFGGDQF 114

Query: 156 DEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDR-------GFGLSSVAV 208
           +E+   +      FF+  + A+  G   S  +   ++ + G           FG+  + +
Sbjct: 115 EER---QLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILM 171

Query: 209 FLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAA 268
            LA I+F+ G  +Y+ +   G +++ ++++  V A++ R     ED   L+         
Sbjct: 172 TLALIVFSMGSKMYKKKPPVG-NIVSKVMKCIVFALKKRFRTRSEDWPRLH--------- 221

Query: 269 IETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCC 328
                        +LD AA        +                + + K +L ++ +F  
Sbjct: 222 -------------WLDWAA--PKYLIRM----------------IRSTKRLLRVLFLFIP 250

Query: 329 TIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASL-PILPILFMILAVPVYDRIFVPF 387
             +      Q  +    Q   MD  V   F I P  +  + P+L +IL VP++D +  P 
Sbjct: 251 LPMFWALFDQQGSRWTLQATRMDGDVGL-FPIQPDQMQAVNPLLVLIL-VPIFDYVVYPA 308

Query: 388 AGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEV 423
             K     T  T L+++ VG++L+ ++ A+AA+ + 
Sbjct: 309 LAKCG---TRFTSLRKMAVGMLLAALAFAVAALLQN 341

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 12/170 (7%)

Query: 49  LVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPP 108
           L       L  D   A    + Y    Y+  I+   LAD  +G  + +++   +  +   
Sbjct: 48  LYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHL 107

Query: 109 CNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSS 168
                  +G           L++ L LI  GT   K  +     + + + DP    +   
Sbjct: 108 VLAISSVSG--------PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDG 155

Query: 169 FFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAG 218
            F L ++ + IG  I+  +   +  N GW  GFGL++V + +  +IF  G
Sbjct: 156 GFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205

Length = 498

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 13/167 (7%)

Query: 52  YFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNV 111
                L     +A      Y    Y+L+ V     D   G  K +++ G V  L      
Sbjct: 38  VQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA 97

Query: 112 FDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFN 171
                           L+F  L  IA G+   KA         ++  D     +    F 
Sbjct: 98  MSIYPD----------LIFYGLGTIAVGSGLFKANPSSMVGKLYERGD---MPRRDGGFT 144

Query: 172 LLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAG 218
           L ++++ IG  IS  L   I +N G+  GF L++V + +  + F AG
Sbjct: 145 LFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAG 191

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 123 GSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA 182
           G DA ++++ +  IA G    KA      +  +++ DP    ++   F + ++++ IG  
Sbjct: 109 GHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSF 164

Query: 183 ISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFA 216
            S+    W+    GW   F LS V + +  + FA
Sbjct: 165 FSMLATPWLAAKYGWSVAFALSVVGMLITVVNFA 198

Length = 500

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 38/193 (19%), Positives = 66/193 (34%), Gaps = 18/193 (9%)

Query: 29  LLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADA 88
           LL+   F    L    L   L       L L  ++A   V+ +     + S++   L+D 
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 89  FIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALP 148
           F GR + +L+   +  L      F           S   LL V  +L+  G   +  A  
Sbjct: 61  F-GRRRVLLLGLLLFALGSLLLAF----------ASSLWLLLVGRFLLGLGGGALYPAAA 109

Query: 149 PYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAV 208
              A+ F  K      +      L      +G  +   L   + ++ GW   F + ++  
Sbjct: 110 ALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163

Query: 209 FLATIIFAAGLPL 221
            L  ++    L L
Sbjct: 164 LLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	578
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.97
PRK05122	399	major facilitator superfamily transporter; Provisi	99.95
PRK12382	392	putative transporter; Provisional	99.94
PRK03545	390	putative arabinose transporter; Provisional	99.94
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.94
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.94
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.94
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.94
PRK10504	471	putative transporter; Provisional	99.93
PRK10054	395	putative transporter; Provisional	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.93
PRK11663	434	regulatory protein UhpC; Provisional	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.93
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.93
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.93
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.93
PRK09874	408	drug efflux system protein MdtG; Provisional	99.93
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.92
TIGR00893	399	2A0114 d-galactonate transporter.	99.92
PRK09705	393	cynX putative cyanate transporter; Provisional	99.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.92
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.92
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.92
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.92
PRK10642	490	proline/glycine betaine transporter; Provisional	99.92
PRK10091	382	MFS transport protein AraJ; Provisional	99.92
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.92
PRK09952	438	shikimate transporter; Provisional	99.91
TIGR00891	405	2A0112 putative sialic acid transporter.	99.91
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.91
KOG2532	466	consensus Permease of the major facilitator superf	99.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.91
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.91
PRK03699	394	putative transporter; Provisional	99.91
PRK12307	426	putative sialic acid transporter; Provisional	99.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
PLN00028	476	nitrate transmembrane transporter; Provisional	99.91
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.91
PRK03633	381	putative MFS family transporter protein; Provision	99.9
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.9
TIGR00895	398	2A0115 benzoate transport.	99.9
PRK15011	393	sugar efflux transporter B; Provisional	99.9
TIGR00898	505	2A0119 cation transport protein.	99.9
PRK03893	496	putative sialic acid transporter; Provisional	99.9
PRK11043	401	putative transporter; Provisional	99.9
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.9
PRK09528	420	lacY galactoside permease; Reviewed	99.89
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.89
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.89
PRK15075	434	citrate-proton symporter; Provisional	99.89
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.89
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.88
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.88
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.88
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.88
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.88
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.87
KOG0254	513	consensus Predicted transporter (major facilitator	99.87
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.87
KOG0569	485	consensus Permease of the major facilitator superf	99.87
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.86
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.86
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.86
PRK10133	438	L-fucose transporter; Provisional	99.86
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.86
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.86
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.85
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.85
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.84
PRK11010	491	ampG muropeptide transporter; Validated	99.84
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.84
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.81
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.81
TIGR00901	356	2A0125 AmpG-related permease.	99.8
TIGR00805	633	oat sodium-independent organic anion transporter.	99.79
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.79
PRK11902	402	ampG muropeptide transporter; Reviewed	99.79
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.79
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.77
PRK09848	448	glucuronide transporter; Provisional	99.75
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.75
PRK09669	444	putative symporter YagG; Provisional	99.74
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.74
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.74
PF13347	428	MFS_2: MFS/sugar transport protein	99.74
PRK10429	473	melibiose:sodium symporter; Provisional	99.73
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.73
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.71
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.71
KOG2615	451	consensus Permease of the major facilitator superf	99.7
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.67
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.66
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.66
PRK11462	460	putative transporter; Provisional	99.64
PTZ00207	591	hypothetical protein; Provisional	99.64
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.62
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.62
KOG2533	495	consensus Permease of the major facilitator superf	99.61
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.6
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.56
PRK15011	393	sugar efflux transporter B; Provisional	99.5
COG2211	467	MelB Na+/melibiose symporter and related transport	99.48
PRK10642	490	proline/glycine betaine transporter; Provisional	99.47
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.44
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.42
PRK05122	399	major facilitator superfamily transporter; Provisi	99.41
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.39
PRK09952	438	shikimate transporter; Provisional	99.39
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.38
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.37
PRK03699	394	putative transporter; Provisional	99.37
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.36
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.35
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.32
PRK09874	408	drug efflux system protein MdtG; Provisional	99.32
TIGR00893	399	2A0114 d-galactonate transporter.	99.32
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.31
PRK12382	392	putative transporter; Provisional	99.3
PRK15075	434	citrate-proton symporter; Provisional	99.3
PRK09705	393	cynX putative cyanate transporter; Provisional	99.29
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.29
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.29
PRK03545	390	putative arabinose transporter; Provisional	99.29
PRK03633	381	putative MFS family transporter protein; Provision	99.28
PRK09528	420	lacY galactoside permease; Reviewed	99.28
KOG2563	480	consensus Permease of the major facilitator superf	99.27
PRK10489	417	enterobactin exporter EntS; Provisional	99.26
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.26
PRK11663	434	regulatory protein UhpC; Provisional	99.26
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.25
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.25
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.24
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.24
TIGR00891	405	2A0112 putative sialic acid transporter.	99.23
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.21
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.21
PRK03893	496	putative sialic acid transporter; Provisional	99.2
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.2
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.2
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.2
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.18
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.15
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.15
PLN00028	476	nitrate transmembrane transporter; Provisional	99.15
PRK11010	491	ampG muropeptide transporter; Validated	99.12
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.11
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.11
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.1
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.1
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.1
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.09
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.09
PRK10504	471	putative transporter; Provisional	99.08
PRK10091	382	MFS transport protein AraJ; Provisional	99.06
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.04
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.03
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.03
TIGR00900	365	2A0121 H+ Antiporter protein.	99.03
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.02
TIGR00895	398	2A0115 benzoate transport.	99.01
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.99
PRK12307	426	putative sialic acid transporter; Provisional	98.98
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.95
KOG3626	735	consensus Organic anion transporter [Secondary met	98.94
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.94
PRK10054	395	putative transporter; Provisional	98.94
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.93
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.92
PRK10133	438	L-fucose transporter; Provisional	98.9
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.9
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.89
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.89
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.86
PRK11902	402	ampG muropeptide transporter; Reviewed	98.86
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.85
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.85
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.85
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.81
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.81
PF13347	428	MFS_2: MFS/sugar transport protein	98.8
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.8
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.8
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.76
KOG2532	466	consensus Permease of the major facilitator superf	98.76
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.76
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.75
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.75
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.74
TIGR00898	505	2A0119 cation transport protein.	98.72
TIGR00901	356	2A0125 AmpG-related permease.	98.72
PRK09848	448	glucuronide transporter; Provisional	98.7
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.68
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.64
PRK10429	473	melibiose:sodium symporter; Provisional	98.61
KOG0569	485	consensus Permease of the major facilitator superf	98.59
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.59
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.59
PRK11043	401	putative transporter; Provisional	98.58
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.57
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.52
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.51
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.5
PRK09669	444	putative symporter YagG; Provisional	98.49
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.48
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.47
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.42
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.42
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.31
KOG3762	618	consensus Predicted transporter [General function	98.27
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.27
COG2211	467	MelB Na+/melibiose symporter and related transport	98.27
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.26
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.26
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.24
PRK11462	460	putative transporter; Provisional	98.18
COG0477	338	ProP Permeases of the major facilitator superfamil	98.17
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.16
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.13
TIGR00805	633	oat sodium-independent organic anion transporter.	98.1
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.09
PF12832	77	MFS_1_like: MFS_1 like family	98.05
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.03
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.01
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.01
PTZ00207	591	hypothetical protein; Provisional	97.96
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.95
KOG3762	618	consensus Predicted transporter [General function	97.9
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.87
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.86
KOG2533	495	consensus Permease of the major facilitator superf	97.83
KOG0254	513	consensus Predicted transporter (major facilitator	97.81
KOG0637	498	consensus Sucrose transporter and related proteins	97.8
KOG2615	451	consensus Permease of the major facilitator superf	97.61
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.57
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.49
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.36
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.18
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.12
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.99
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.96
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.81
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.38
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.31
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.24
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.14
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.06
KOG0637	498	consensus Sucrose transporter and related proteins	95.95
PRK03612	521	spermidine synthase; Provisional	95.9
KOG2563	480	consensus Permease of the major facilitator superf	95.89
KOG3626	735	consensus Organic anion transporter [Secondary met	95.82
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.61
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	94.85
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.61
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.38
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.79
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	93.18
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	92.98
KOG3810	433	consensus Micronutrient transporters (folate trans	92.69
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	92.19
COG0477	338	ProP Permeases of the major facilitator superfamil	91.04
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	86.91
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	86.31
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	86.03
KOG3097	390	consensus Predicted membrane protein [Function unk	85.74
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	84.92
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.84
KOG3098	461	consensus Uncharacterized conserved protein [Funct	83.18
COG3202	509	ATP/ADP translocase [Energy production and convers	82.12
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	81.79

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-44  Score=386.98  Aligned_cols=535  Identities=40%  Similarity=0.669  Sum_probs=458.0

Q ss_pred             cccCCCccccc---ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 043156           10 VDWKGRPAVKY---KHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLA   86 (578)
Q Consensus        10 ~~~~~~~~~~~---~~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~la   86 (578)
                      .+....+..+.   ++..|+....++..+.+++.++|++..++..|+..++|.+...+...+..+.......++++++++
T Consensus        18 ~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~la   97 (571)
T KOG1237|consen   18 VDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLA   97 (571)
T ss_pred             eeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33333444443   566789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhhhhhhhhhhccCCcccccCCCC---------------CccccccchhHHHHHHHHHHHHhcccccccccccc
Q 043156           87 DAFIGRFKAVLISGSVEFLPPPCNVFDPTA---------------GCKKIEGSDAALLFVALYLIATGTAGIKAALPPYG  151 (578)
Q Consensus        87 D~~~Grr~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v  151 (578)
                      |.++||.+++.++.++..+|..++.++...               .|..........++.++.+.++|.|+..|+..++.
T Consensus        98 D~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fG  177 (571)
T KOG1237|consen   98 DSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFG  177 (571)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhc
Confidence            999999999999999988775443321100               11112223455788899999999999999999999


Q ss_pred             ccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcc
Q 043156          152 ADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSS  231 (578)
Q Consensus       152 ~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (578)
                      +|++++.++.+++.+.+.+.++|+..++|..++-.+..+++++.||.+.|.++.++.+++.++++...+.|+.++|.+ +
T Consensus       178 adQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~g-s  256 (571)
T KOG1237|consen  178 ADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRG-S  256 (571)
T ss_pred             ccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCC-C
Confidence            999998777777788899999999999999999999999999999999999999999999999999999999988988 8


Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccch
Q 043156          232 VLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVT  311 (578)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (578)
                      |+..+.+++..+.++|....+.++... +     .........++.+..+++|+++.+..+..  ......++|+.+..+
T Consensus       257 p~t~i~~Vlvaa~~k~~~~~~~~~~~~-~-----~~~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~  328 (571)
T KOG1237|consen  257 PKTRIGQVLVAAAFKRKAVVSLDPEEL-Y-----YDCTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVT  328 (571)
T ss_pred             chhHHHHHHHHHHHHHhccCCCcchhc-c-----ccccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCce
Confidence            999999999999999988887764443 1     01111122334566788888877755421  112345789999999


Q ss_pred             hhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccc
Q 043156          312 QVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKI  391 (578)
Q Consensus       312 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~  391 (578)
                      ++||.|.+++.++.+...+.++.++.|+.+.+.+|...||+++++.+.+|++.+..+..+.+.+..|+.+++..|+.||.
T Consensus       329 ~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~  408 (571)
T KOG1237|consen  329 QVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKL  408 (571)
T ss_pred             ehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhh
Confidence            99999999999999999999999999999999999999999998449999999999999999999999999999999999


Q ss_pred             cCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhh
Q 043156          392 TGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLE  471 (578)
Q Consensus       392 ~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~  471 (578)
                      ++.+.+++.++++.+|+++..++|...+..+..|.+.+..+.       +...+++++|++++|+++|++|.+..+...+
T Consensus       409 t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~-------~~~~~mSi~W~iPQyvLig~~Evf~~vg~lE  481 (571)
T KOG1237|consen  409 TGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLL-------VETNPMSILWQIPQYVLLGAGEVFTSVGGLE  481 (571)
T ss_pred             cCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhcc-------CCCCCeeHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            988888999999999999999999999999988877654411       2246899999999999999999999999999


Q ss_pred             eeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 043156          472 FFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLF  551 (578)
Q Consensus       472 ~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  551 (578)
                      +.++++|++||+.+++++.+...+|+.++..++..+...+..   ..+|+.++++|+++.+++||+++.++.+....+.+
T Consensus       482 FfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~---~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~  558 (571)
T KOG1237|consen  482 FFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK---AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLI  558 (571)
T ss_pred             HhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEE
Confidence            999999999999999999999999999999999988765510   34799878999999999999999999999999999


Q ss_pred             hccccccccccc
Q 043156          552 MSSRYNYRPQTS  563 (578)
Q Consensus       552 ~~~~~~~~~~~~  563 (578)
                      +.+++++++.++
T Consensus       559 ~~~~y~~~~~~~  570 (571)
T KOG1237|consen  559 CAKRYDYKDDKD  570 (571)
T ss_pred             EEEeeeeccccC
Confidence            999998776553

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-42  Score=354.58  Aligned_cols=464  Identities=17%  Similarity=0.254  Sum_probs=358.9

Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch
Q 043156           17 AVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLH----LDLAEAANQVTNYMGTSYILSIVVALLADAFIGR   92 (578)
Q Consensus        17 ~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg----~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr   92 (578)
                      ..+..-+|||.++.++..++.|+++||++...+..|+..+++    +|++++..+.+.|....++.+++|||+|||++|+
T Consensus        12 ~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~   91 (498)
T COG3104          12 LEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGT   91 (498)
T ss_pred             cccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            333345699999999999999999999999999999999988    9999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhccCCcccccCCCCCcccccc--chhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHH
Q 043156           93 FKAVLISGSVEFLPPPCNVFDPTAGCKKIEG--SDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFF  170 (578)
Q Consensus        93 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~  170 (578)
                      ||++..|.++.++|.+++          +.+  .+...++++..++.+|.|...|+..++++|++|++|+    ||..++
T Consensus        92 ~~tI~lGail~~iGh~~L----------~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gF  157 (498)
T COG3104          92 RRTIVLGAILMAIGHLVL----------AISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGF  157 (498)
T ss_pred             hHHHHHHHHHHHHHHHHH----------hccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCc
Confidence            999999999999998776          222  4567889999999999999999999999999999995    799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecC--CCCcchHH--H----HHHHHHH
Q 043156          171 NLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQV--VQGSSVLI--E----IIQVYVA  242 (578)
Q Consensus       171 ~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~----~~~~~~~  242 (578)
                      +++|.+.|+|+.++|.+.+++.+.+||...|.++++...++++.++.++++.....  ++. .++.  .    ..+++..
T Consensus       158 t~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  236 (498)
T COG3104         158 TLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDP-NPLSFNFLLPVLGGLVVM  236 (498)
T ss_pred             cEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCc-cchhhhhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999998888876654432  111 1110  0    0000000


Q ss_pred             HHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhh-HhhhhccCccccccccCCCCCccccchhhhhHHHHHh
Q 043156          243 AIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLD-KAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILG  321 (578)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  321 (578)
                      ...-.          .....             ..+...... .........+.      ...++ .++.. ++|||+..
T Consensus       237 ~~~~~----------~~~~l-------------~~~~~~~~~~~~~i~~~~~~~------~~~~~-~~~~~-~er~r~~~  285 (498)
T COG3104         237 ILAAL----------LTLLL-------------NQNTFSGVLLVISILIAIIYF------AEAFR-SPKVF-DERRRLLA  285 (498)
T ss_pred             HHHHH----------HHHHH-------------HHHHHHHHHHHHHHHHHHHHH------HHHhc-cCccH-HHHHHHHH
Confidence            00000          00000             000000000 00000000000      00000 11123 78999999


Q ss_pred             HHHHHHHHHHHHHhhhccchhhhhhhc-cCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCc
Q 043156          322 MIPIFCCTIVMTLCLAQLQTFSIQQGL-TMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITH  400 (578)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~  400 (578)
                      .++++...++||+++.|..+.+..+.. +.+++.. |+++++++++++|++.+++++|+.+++..|+.++.    +.++.
T Consensus       286 ~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~----~~ps~  360 (498)
T COG3104         286 AIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN----KQPST  360 (498)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC----CCCCc
Confidence            999999999999999999987765554 4456645 68999999999999999999999999999988774    45689


Q ss_pred             hhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCch
Q 043156          401 LQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKG  480 (578)
Q Consensus       401 ~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~  480 (578)
                      +.|+..|+++++.+++++........              ++....|.+|+++.|+++++||.+.+|...+++++.+|++
T Consensus       361 ~~KFalGl~l~g~~fl~l~~~~~~~~--------------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~  426 (498)
T COG3104         361 PIKFALGLILAGLGFLILLLAGIWFG--------------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPA  426 (498)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhc--------------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHH
Confidence            99999999999999999888743320              1244689999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 043156          481 IKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYN  557 (578)
Q Consensus       481 ~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~  557 (578)
                      +.+..++.|.+....|+.++..+.+.... +.           +..+.......|+.++...++..+..+...++.+
T Consensus       427 ~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~-----------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~  491 (498)
T COG3104         427 LKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD-----------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLN  491 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhhceecccccc-cc-----------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999887763211 10           1112234456799999888888888777776654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=1.1e-38  Score=344.28  Aligned_cols=462  Identities=14%  Similarity=0.185  Sum_probs=336.4

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      ++|||.++.+++.+++|+++||++.++++.|+++++|++.++++++.+.+.....+..+++|+++||++||||+++++.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999993399999999999


Q ss_pred             hhccCCcccccCCCCCccccccch-hHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSD-AALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIG  180 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG  180 (578)
                      ++.++.+++          ....+ ...++++|.++++|.|...|+..++++|++|+++    ++|+++++++|++.|+|
T Consensus        90 ~~~~g~~~~----------~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~----~~~~~~~~~~~~~~nig  155 (489)
T PRK10207         90 VLAIGYFMT----------GMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD----PRLDGAFTLFYMSINIG  155 (489)
T ss_pred             HHHHHHHHH----------HHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc----hhhhcchhHHHHHHHHH
Confidence            999876664          22222 3345689999999999999999999999999876    24788999999999999


Q ss_pred             HHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceec--CCCCcchHHHHHHHHHH-------HHHhcccCC
Q 043156          181 GAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQ--VVQGSSVLIEIIQVYVA-------AIRNRKLEL  251 (578)
Q Consensus       181 ~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~  251 (578)
                      +.+||.+++++.+++||++.|++.++..+++++.+.+.++++++.  +|++ ++. |..+.+..       .....+...
T Consensus       156 ~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-d~~~~~l~~~~~~~~~~~~~~~~~  233 (489)
T PRK10207        156 SLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDH-KPM-SFSKLLLVLLGSVVMIFVCAWLMH  233 (489)
T ss_pred             HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCc-cch-hhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998776666666655555444332  2222 221 21111110       000000000


Q ss_pred             CCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHH
Q 043156          252 PEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIV  331 (578)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  331 (578)
                      ..........                 .............               ..+.+ ..++++.+..+.++...+.
T Consensus       234 ~~~~~~~~~~-----------------~~~~i~~~~f~~~---------------~~~~~-~~~r~r~~~~~~l~~~~~~  280 (489)
T PRK10207        234 NVEVANLVLI-----------------VLSIVVTIIFFRE---------------AFKLD-KTGRNKMFVAFVLMLEAVV  280 (489)
T ss_pred             hhhHHHHHHH-----------------HHHHHHHHHHHHH---------------HhcCC-HHHHHHHHHHHHHHHHHHH
Confidence            0000000000                 0000000000000               00001 2345666666677788999


Q ss_pred             HHHhhhccchhhhhhhc-cCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHH
Q 043156          332 MTLCLAQLQTFSIQQGL-TMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVL  410 (578)
Q Consensus       332 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~  410 (578)
                      +|+++.|..+.+..+.. +.++... ++.+++++++++|++.++++.|+.+++.+|+.+|.    ..++...++.+|+++
T Consensus       281 f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~----~~~~~~~k~~~G~~l  355 (489)
T PRK10207        281 FYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHLGSKG----KDLSMPMKFTLGMFL  355 (489)
T ss_pred             HHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCC----CCCCcHHHHHHHHHH
Confidence            99999999765544443 4555555 78888899999999999999999999988887763    456888999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHH
Q 043156          411 SCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLW  490 (578)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~  490 (578)
                      .+++++.++......   .           +.....+.+|+++.+++.++||++.+|+.++++++.+|++++|.++|+++
T Consensus       356 ~~~~~~~~~~~~~~~---~-----------~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~  421 (489)
T PRK10207        356 CSLGFLTAAAAGMWF---A-----------DAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWF  421 (489)
T ss_pred             HHHHHHHHHHHHHhh---c-----------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHH
Confidence            999987765433111   0           01124578899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 043156          491 CSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYR  559 (578)
Q Consensus       491 ~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~  559 (578)
                      +.+++|+.+|..+...+.....   ..++.     .....|..+|...++.++++.++++++.++.++.
T Consensus       422 l~~~ig~~lg~~l~~~~~~~~~---~~~~~-----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~  482 (489)
T PRK10207        422 LTQAAAFLLGGYVATFTAVPDN---ITDPL-----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM  482 (489)
T ss_pred             HHHHHHHHHHHHHHHHhccccc---cccch-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988876531000   00011     0123467889999999998888888877766543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=1.9e-38  Score=337.62  Aligned_cols=466  Identities=14%  Similarity=0.166  Sum_probs=330.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhh
Q 043156           23 GGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV  102 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~  102 (578)
                      +|||.++.+++.++++++++|++..+++.|+++++|++..+++.+.+.+.....++++++|+++||++||||+++++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999977999999999998


Q ss_pred             hccCCcccccCCCCCcccccc-chhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEG-SDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      .+++.+++          ... .+...++++..+..+|.|...|+.+++++|++|++++    +|+++++++|...|+|+
T Consensus        86 ~~lg~lll----------~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~~nlG~  151 (493)
T PRK15462         86 MAIGHVVL----------GASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGS  151 (493)
T ss_pred             HHHHHHHH----------HHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHHHHHHH
Confidence            88765443          111 1223345566667788888889889999999998752    59999999999999999


Q ss_pred             HHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHH--HHHH----HHHHHHHhcccCCCCCc
Q 043156          182 AISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLI--EIIQ----VYVAAIRNRKLELPEDP  255 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~  255 (578)
                      .++|.+.+++.+++||++.|.++++..+++++.++..++++.+..+.+.++..  +...    .+....--.       +
T Consensus       152 ~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  224 (493)
T PRK15462        152 IIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVAT-------P  224 (493)
T ss_pred             HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHH-------H
Confidence            99999999999989999999998877777776666655544332110001110  0000    000000000       0


Q ss_pred             hhhhhhchhhhhhhhcccCCCCCccchhhH-hhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHH
Q 043156          256 MELYEINMDKEAAIETEFLPHRDIFRFLDK-AAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTL  334 (578)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  334 (578)
                      .....  ...          + ......-. ...... .+.+..      .+ .. ...+||||+...+.++...++||+
T Consensus       225 ~~~~~--~~~----------~-~~~~~~~~~~~~~~~-~~~~~~------~~-~~-~~~~er~r~~~~~~l~~~~~~Fw~  282 (493)
T PRK15462        225 ALITV--LFW----------K-EWSVYALIVATIIGL-GVLAKI------YR-KA-ENQKQRKELGLIVTLTFFSMLFWA  282 (493)
T ss_pred             HHHHH--HHH----------H-HHHHHHHHHHHHHHH-HHHHHH------HH-hc-CCHHHHhhHHHHHHHHHHHHHHHH
Confidence            00000  000          0 00000000 000000 000000      00 00 134678899899999999999999


Q ss_pred             hhhccchhhhhhh-ccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHH
Q 043156          335 CLAQLQTFSIQQG-LTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCI  413 (578)
Q Consensus       335 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~  413 (578)
                      .+.|.++.+.... .+.|++++ ++++|+++++++|++.+++++|+..++..++.||.    +.++.+.|+.+|++++++
T Consensus       283 ~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~----~~~s~~~Kfa~g~~~~g~  357 (493)
T PRK15462        283 FAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGN----RTVRIWGKFALGLGLMSA  357 (493)
T ss_pred             HHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC----CCCCcHHHHHHHHHHHHH
Confidence            9999997543333 47888888 89999999999999999999999999987775542    246899999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHH
Q 043156          414 SMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSM  493 (578)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~  493 (578)
                      +++++.+.....    +           +....+.+|++..++++++||.+.+|..++++.+.+|++.||++||+|.+..
T Consensus       358 ~f~~l~~~~~~~----~-----------~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~  422 (493)
T PRK15462        358 GFCILTLSARWS----A-----------MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLS  422 (493)
T ss_pred             HHHHHHHHHhhc----C-----------CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            999887755211    1           1124789999999999999999999999999999999999999999998854


Q ss_pred             -HHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHH-HH-HHhhhccccc
Q 043156          494 -ALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFIN-FS-VYLFMSSRYN  557 (578)
Q Consensus       494 -~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~-~i-~~~~~~~~~~  557 (578)
                       .+|+.++..+.......+..  .+. -.   +-+..+|..+|...+.+.+++ .+ .+..+++..|
T Consensus       423 ~~~~~~~~g~~~~~~~~~~~~--~~~-~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  483 (493)
T PRK15462        423 GAIANYLAGVIADQTSQASFD--ASG-AI---NYSINAYIEVFDQITWGALACVGVVLMIWLYQALK  483 (493)
T ss_pred             HHHHHHHHHHHHHHhccccCC--ccc-cc---cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             68888888777765321100  000 00   001235777888888877766 43 3444444333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=9.9e-38  Score=336.43  Aligned_cols=449  Identities=18%  Similarity=0.178  Sum_probs=334.0

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGV--LHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLIS   99 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~   99 (578)
                      .+|||.++.+++.++++++++|++.++++.|++++  +|++..+++++.+.+.+++.++++++|+++||++||||+++++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            46899999999999999999999999999999988  9999999999999999999999999999999933999999999


Q ss_pred             hhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH
Q 043156          100 GSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI  179 (578)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l  179 (578)
                      .++.+++.++.          ....+...++++|.+.++|.|...|+..++++|++|+++.   ++|+++++++|.+.|+
T Consensus        86 ~~~~~~g~~~~----------~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~ni  152 (475)
T TIGR00924        86 GIVLMLGHFML----------AMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFTLFYMSINI  152 (475)
T ss_pred             HHHHHHHHHHH----------HhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceehhHHHHHHH
Confidence            99988776554          3344566788899999999999999999999999997642   2489999999999999


Q ss_pred             HHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHH----HH-HH------HHHHHHHhcc
Q 043156          180 GGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLI----EI-IQ------VYVAAIRNRK  248 (578)
Q Consensus       180 G~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~------~~~~~~~~~~  248 (578)
                      |..+||.+++++.+++||++.|++.++..+++.+.+.+.++.+++.++++ ++..    +. .+      .+....+..+
T Consensus       153 G~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (475)
T TIGR00924       153 GSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAALALVFFCAW  231 (475)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999889999999988776666666655555443322211 1110    00 00      0000000000


Q ss_pred             cCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhH----hhhhccCccccccccCCCCCccccchhhhhHHHHHhHHH
Q 043156          249 LELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDK----AAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIP  324 (578)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  324 (578)
                      ..                        .+.........    +......      .....+    . ....++++..+.+.
T Consensus       232 ~~------------------------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~----~-~~~~~~~~~~~~l~  276 (475)
T TIGR00924       232 LM------------------------HHVVIANILLMTVTLAVIIFFF------RLAFKP----R-LDAVARNKMYAYIV  276 (475)
T ss_pred             HH------------------------hccHHHHHHHHHHHHHHHHHHH------HHHHhc----c-CCHHHHhHHHHHHH
Confidence            00                        00000000000    0000000      000001    0 11233455556788


Q ss_pred             HHHHHHHHHHhhhccchhhh-hhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhh
Q 043156          325 IFCCTIVMTLCLAQLQTFSI-QQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQR  403 (578)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~  403 (578)
                      +++...++|+.+.|..+.+. ++..+++.+++ +++++++++.++|++.+++++|+.+++..++.||.    ..++...|
T Consensus       277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~----~~~~~~~k  351 (475)
T TIGR00924       277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG----KDPTTPLK  351 (475)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC----CCCCcHHH
Confidence            88999999999999988654 33345677766 78899999999999999999999988766666552    23467778


Q ss_pred             HhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhH
Q 043156          404 VGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKS  483 (578)
Q Consensus       404 ~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg  483 (578)
                      +.+|+++.+++++.+++.....               ++..+.+++|+++++++.++||.+..|..++++++.+|+++||
T Consensus       352 ~~~G~~l~~~~~~~~~~~~~~~---------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g  416 (475)
T TIGR00924       352 FTLGMLFCGASFLTFAASIWFA---------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMG  416 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc---------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence            8999999999998887653110               1123579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 043156          484 LSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYN  557 (578)
Q Consensus       484 ~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~  557 (578)
                      +++|++.+...+|+.+++.+.+....                  ..++..+|...++++++..++++++.++.+
T Consensus       417 ~~~g~~~l~~~~g~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (475)
T TIGR00924       417 QMLGMWFLAQAMGSLLGGYLATFGAV------------------PQGVTGVFGKIGLVTLLVGVVMALMVPWLN  472 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc------------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988775431                  123446788888888888888877777654

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=2e-36  Score=328.15  Aligned_cols=457  Identities=14%  Similarity=0.199  Sum_probs=330.7

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      .+|||.++.+++.++++++++|++.++++.|+++++|++.++++++.+.+........+++|+++||++|||+++.++.+
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999988877778888999999993399999999999


Q ss_pred             hhccCCcccccCCCCCcccccc-chhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEG-SDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIG  180 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG  180 (578)
                      +.+++.+++          ... .+...++++|+++++|.|...|+..++++|++|+++    ++|+++++++|.+.|+|
T Consensus        97 ~~~ig~~l~----------~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~----~~~~~~~~~~~~~~~iG  162 (500)
T PRK09584         97 VLAIGYALV----------AWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD----PRLDGAFTMYYMSINIG  162 (500)
T ss_pred             HHHHHHHHH----------HHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc----hhhhhcchHHHHHHHHH
Confidence            888775553          222 234566788999999999999999999999998765    24677899999999999


Q ss_pred             HHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceec--CCCCcchHH------HHHHHHHHHHHhccc-CC
Q 043156          181 GAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQ--VVQGSSVLI------EIIQVYVAAIRNRKL-EL  251 (578)
Q Consensus       181 ~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~-~~  251 (578)
                      +.+||.+++++.+++||++.|++.++..+++++.++..++.+++.  +|++ ++.+      ...++........+. ..
T Consensus       163 ~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (500)
T PRK09584        163 SFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDF-EPINYRKLLLTIVGVVALIAIATWLLHN  241 (500)
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCc-cccchhhHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998876666655544444333222  1221 1111      111111111111100 00


Q ss_pred             CCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHH
Q 043156          252 PEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIV  331 (578)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  331 (578)
                      ++.....                     ..............         ..   +. ....++++.+..+.++...+.
T Consensus       242 ~~~~~~~---------------------~~~~~~~~~~~~~~---------~~---~~-~~~~~~~~~~~~~~~~~~~i~  287 (500)
T PRK09584        242 QEIARMA---------------------LGVVALGIVVIFGK---------EA---FA-MKGAARRKMIVAFILMLEAII  287 (500)
T ss_pred             chHHHHH---------------------HHHHHHHHHHHHHH---------HH---hh-cCHHHHHHHHHHHHHHHHHHH
Confidence            0000000                     00000000000000         00   00 123456666666777888899


Q ss_pred             HHHhhhccchhhhhhhc-cCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHH
Q 043156          332 MTLCLAQLQTFSIQQGL-TMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVL  410 (578)
Q Consensus       332 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~  410 (578)
                      ||+.+.|.++.+..+.. +.++++. ++.++++++.++|++.+++++|+.+++..|+.+|       ++..+++.+|+++
T Consensus       288 f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l  359 (500)
T PRK09584        288 FFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHH
Confidence            99999999988766543 3555555 7788899999999999999999999887666665       2567899999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHH
Q 043156          411 SCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLW  490 (578)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~  490 (578)
                      ++++++.+......    .+           +...++.+|+++.+++.++||++.+|...+++++.+|+++||+++|++.
T Consensus       360 ~~l~f~~l~~~~~~----~~-----------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~  424 (500)
T PRK09584        360 CSGAFLVLPLGAKF----AN-----------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWF  424 (500)
T ss_pred             HHHHHHHHHHHHHh----cC-----------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            99999988775421    11           1235778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCC-cchhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 043156          491 CSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNIN-RNHLNLFFWLLSALSFINFSVYLFMSSRYNYR  559 (578)
Q Consensus       491 ~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~  559 (578)
                      +...+|+.++..+.+.+..-        +-.. +... .+++..+|..+++++++..++.+...++.++.
T Consensus       425 l~~a~g~~~~g~~~~~~~~~--------~~~~-~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~  485 (500)
T PRK09584        425 LTTAGAALIAGYVANLMAVP--------DNVT-DPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM  485 (500)
T ss_pred             HHHHHHHHHHHHHHHHhccc--------cccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998887644210        0000 1111 13477889999988888777777777766544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.97  E-value=2.5e-28  Score=268.60  Aligned_cols=336  Identities=25%  Similarity=0.416  Sum_probs=270.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCcc
Q 043156           40 LATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCK  119 (578)
Q Consensus        40 ~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (578)
                      ++||++...+..|+.+.+|++.+.+..+.+.+.....+.++++|+++|+++||+|++.++.++..+|..++.+++.+.. 
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~-   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS-   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc-
Confidence            4689999999999999999999999999999999999999999999999999999999999998877665422111000 


Q ss_pred             ccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-----
Q 043156          120 KIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDN-----  194 (578)
Q Consensus       120 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~-----  194 (578)
                       .........+++..+.++|.|+..|+..++.+|++++++.   ++|.++++++|++.|+|+.+++.+.+++.+.     
T Consensus        80 -~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg  155 (654)
T TIGR00926        80 -GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG  155 (654)
T ss_pred             -ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence             0012234467888999999999999999999999987542   3589999999999999999999999999743     


Q ss_pred             --cCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcc
Q 043156          195 --KGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETE  272 (578)
Q Consensus       195 --~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (578)
                        .+|...|.+++++.+++++++...++++++.+|.+ +++.+..+++..+.+++....+++.                 
T Consensus       156 ~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~g-s~l~~v~~vi~~a~~~~~~~~~~~~-----------------  217 (654)
T TIGR00926       156 CQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKG-NIVSKVIKCIVTALRKRFSTRSEHW-----------------  217 (654)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCc-cHHHHHHHHHHHHHHHhhccCCccc-----------------
Confidence              36999999999999999988888888887777766 7777777887777765543221110                 


Q ss_pred             cCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhccCCC
Q 043156          273 FLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDT  352 (578)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (578)
                            ..+|++.+..+.                  ..+.++++|++++.+++++..+.+|.++.|..+.+..|...++.
T Consensus       218 ------~~~~ld~a~~~~------------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~  273 (654)
T TIGR00926       218 ------PLHWLDYAKDKH------------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG  273 (654)
T ss_pred             ------chhHHHHhcccc------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC
Confidence                  023333332211                  12357889999999999999999999999999998888888888


Q ss_pred             CCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHH
Q 043156          353 SVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRK  426 (578)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~  426 (578)
                      +++ ++.+++++++.+|++.++++.|+.+..+.+..+|.+   ..++++.++.+|+++++++++++...+..+.
T Consensus       274 ~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~---~~ls~l~k~~iG~~la~la~~va~~ve~~~~  343 (654)
T TIGR00926       274 DVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCG---TRFTSLRKMAVGGLLAALSFFVAALVQLKVN  343 (654)
T ss_pred             ccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777 788999999999999999999999976666666642   3468899999999999999999888776543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.95  E-value=1.3e-25  Score=237.50  Aligned_cols=378  Identities=13%  Similarity=0.010  Sum_probs=257.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156           24 GIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE  103 (578)
Q Consensus        24 ~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~  103 (578)
                      ..|.+..++...++..++.....+.++.|+++++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++.++.++.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC   91 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence            356777788889999999888899999999999999999999999999999999999999999998 9999999998877


Q ss_pred             ccCCcccccCCCCCccc-cccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKK-IEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                      .++.++..+   ..... ....+...+++.|+++|++.+...++..+++.|++|+++      |+++++++..+.++|..
T Consensus        92 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~  162 (399)
T PRK05122         92 ALSGLLYLL---AGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALA  162 (399)
T ss_pred             HHHHHHHHH---hhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHH
Confidence            644332100   00000 001246678999999999999999999999999999886      99999999999999999


Q ss_pred             HHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhc
Q 043156          183 ISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEIN  262 (578)
Q Consensus       183 ~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (578)
                      ++|.+++++.+.+||++.+++.++..++..+..   .+ .+++++++ ++                       +      
T Consensus       163 ~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~-~~-----------------------~------  208 (399)
T PRK05122        163 IGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVK-GE-----------------------R------  208 (399)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCC-cc-----------------------c------
Confidence            999999999988999998887665543332221   11 11111100 00                       0      


Q ss_pred             hhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHH-HHHHHHHHHHHhhhccch
Q 043156          263 MDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMI-PIFCCTIVMTLCLAQLQT  341 (578)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~  341 (578)
                                                              .++       .+..|+..... ...+....+.......+.
T Consensus       209 ----------------------------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (399)
T PRK05122        209 ----------------------------------------LPF-------RRVLGRVWPYGMGLALASIGFGTIATFITL  241 (399)
T ss_pred             ----------------------------------------hhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                    000       00011111100 111111111111111111


Q ss_pred             hhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHH
Q 043156          342 FSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIF  421 (578)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~  421 (578)
                      ++.+      .+..     ..+.......+..++..++.+++.||..+|           +.+..+.++..++++.+...
T Consensus       242 ~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~~  299 (399)
T PRK05122        242 YYAA------RGWD-----GAALALTLFGVAFVGARLLFGNLINRLGGL-----------RVAIVSLLVEILGLLLLWLA  299 (399)
T ss_pred             HHHH------cccc-----cchHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHh
Confidence            1111      1100     112223344566667777888888776655           34566666777666555542


Q ss_pred             HHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHH
Q 043156          422 EVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFST  501 (578)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~  501 (578)
                      .                        +.+.+++..++.|++.+...|.......+.+|++.||++.|+++....+|..+++
T Consensus       300 ~------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~  355 (399)
T PRK05122        300 P------------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITG  355 (399)
T ss_pred             c------------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2                        3444556678889988888888777888999999999999999999999999999


Q ss_pred             HHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 043156          502 ILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRY  556 (578)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~  556 (578)
                      .+.+.+.+                  ..+|+..|+..++++++++++.+++.++.
T Consensus       356 ~~~g~l~~------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        356 PLAGLVAS------------------WFGYPSIFLAAALAALLGLALTWLLYRRA  392 (399)
T ss_pred             HHHHHHHH------------------HcCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            88887652                  12467788888888888877776654433

>PRK12382 putative transporter; Provisional

Probab=99.94  E-value=3.8e-25  Score=233.39  Aligned_cols=378  Identities=11%  Similarity=-0.002  Sum_probs=252.9

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhh
Q 043156           23 GGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV  102 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~  102 (578)
                      ...+.++.+.+..++...+.....+.++.|+.+++|.|.++.|++.+.+.++..++.++.|+++||+ ||||++.++.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~   90 (392)
T PRK12382         12 SANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLA   90 (392)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHH
Confidence            3345667777777888888787888899999999999999999999999999999999999999998 999999988776


Q ss_pred             hccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                      ..++.+....  ..........+...++++|+++|++.+...++..+++.|.+|+++      |+++++++..+.++|..
T Consensus        91 ~~~~~~~~~~--~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~  162 (392)
T PRK12382         91 CGLAGLAYLL--AAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALA  162 (392)
T ss_pred             HHHHHHHHHh--hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHH
Confidence            6543221100  000000123567889999999999999988888889999999876      99999999999999999


Q ss_pred             HHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhc
Q 043156          183 ISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEIN  262 (578)
Q Consensus       183 ~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (578)
                      ++|.+++++.+.+||++.+.+..+..++..   .+. ++.++.++++ +                     + +       
T Consensus       163 ~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~---------------------~-~-------  208 (392)
T PRK12382        163 AGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFN-GTVRKVPAHA-G---------------------E-R-------  208 (392)
T ss_pred             HHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHH-HhccCCCCCc-c---------------------c-C-------
Confidence            999999999888899987765544322222   111 1111110000 0                     0 0       


Q ss_pred             hhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHh-HHHHHHHHHHHHHhhhccch
Q 043156          263 MDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILG-MIPIFCCTIVMTLCLAQLQT  341 (578)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~  341 (578)
                                                              .++       .+..|...+ ..........+.......+.
T Consensus       209 ----------------------------------------~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  241 (392)
T PRK12382        209 ----------------------------------------PSL-------WSVVGLIWKPGLGLALQGVGFAVIGTFVSL  241 (392)
T ss_pred             ----------------------------------------chH-------HHHHHHHHHhHHHHHHHHHHHhHHHHHHHH
Confidence                                                    000       000000000 00011111111111111111


Q ss_pred             hhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHH
Q 043156          342 FSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIF  421 (578)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~  421 (578)
                      ++ .+     .+..     ..+.......+..++..++.+++.||+++|           +.+..+..+..++++.....
T Consensus       242 ~~-~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~  299 (392)
T PRK12382        242 YF-AS-----KGWA-----MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV-----------KVAIVSLLVETVGLLLLWLA  299 (392)
T ss_pred             HH-Hh-----cCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------eehHHHHHHHHHHHHHHHHc
Confidence            11 11     1110     112223334555677778888888877766           34556677776666554442


Q ss_pred             HHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHH
Q 043156          422 EVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFST  501 (578)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~  501 (578)
                      .                        +.++..+..++.+++.+...|.......+.+|++.||++.|+++....+|+.+++
T Consensus       300 ~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~  355 (392)
T PRK12382        300 P------------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSG  355 (392)
T ss_pred             c------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2                        3344555677888888888888888888999999999999999999999999999


Q ss_pred             HHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 043156          502 ILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSS  554 (578)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  554 (578)
                      .+.+.+.+.                  .+|+..|...+++.++++++.++..+
T Consensus       356 ~~~g~l~~~------------------~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (392)
T PRK12382        356 PLAGMLATS------------------FGYPSVFLAGAISAVLGIIVTILSFR  390 (392)
T ss_pred             HHHHHHHHH------------------hCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            999887621                  23567888888888888877765543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=2.1e-25  Score=235.28  Aligned_cols=373  Identities=13%  Similarity=0.079  Sum_probs=251.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      +..++.+.+..+......+...+.+ ..+.+++|.|.++.+++.+.+.++..++.++.|+++||+ ||||++.++.++..
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   85 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI   85 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence            4456666666666544544333334 456789999999999999999999999999999999998 99999999988888


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      ++.++.          ...++++.+++.|+++|++.+...|...+++.|++|+++      |+++++++..+.++|..++
T Consensus        86 ~~~~~~----------~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig  149 (390)
T PRK03545         86 ASHVLS----------ALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLG  149 (390)
T ss_pred             HHHHHH----------HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHH
Confidence            665553          445788899999999999999888999999999999876      9999999999999999999


Q ss_pred             HHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchh
Q 043156          185 VTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMD  264 (578)
Q Consensus       185 p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (578)
                      |.+++.+.+++|||+.|++.+++.++..+..+...++.+++  ++ ++..+                             
T Consensus       150 ~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~-~~~~~-----------------------------  197 (390)
T PRK03545        150 LPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HS-GSLKS-----------------------------  197 (390)
T ss_pred             hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--Cc-chHHH-----------------------------
Confidence            99999999888999999998877655544433322221110  00 00000                             


Q ss_pred             hhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHh-HHHHHHHHHHHHHhhhccchhh
Q 043156          265 KEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILG-MIPIFCCTIVMTLCLAQLQTFS  343 (578)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~  343 (578)
                                       .   .                        +..++ +.... ....++.....+......++++
T Consensus       198 -----------------~---~------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l  232 (390)
T PRK03545        198 -----------------L---P------------------------LLFRR-PALVSLYLLTVVVVTAHFTAYSYIEPFV  232 (390)
T ss_pred             -----------------H---H------------------------HHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             0   0                        00000 11111 1111111112222222222222


Q ss_pred             hhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHH
Q 043156          344 IQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEV  423 (578)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~  423 (578)
                      .++ .+.+.       ...+.+.....+..++..++.+++.||..+|            .+.++..+..+++....... 
T Consensus       233 ~~~-~g~s~-------~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------------~~~~~~~~~~~~~~~l~~~~-  291 (390)
T PRK03545        233 QQV-AGLSE-------NFATLLLLLFGGAGIIGSVLFSRLGNRHPSG------------FLLIAIALLLVCLLLLLPAA-  291 (390)
T ss_pred             HHh-cCCCc-------cHHHHHHHHHHHHHHHHHHHHHHHhhccchh------------HHHHHHHHHHHHHHHHHHHh-
Confidence            111 11111       1123344445566777777788887665443            34455555555544332221 


Q ss_pred             HHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 043156          424 IRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTIL  503 (578)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~  503 (578)
                                            .+.+.++...++.|++.....+.....+.+..| +.||+++|+.+....+|..+|+.+
T Consensus       292 ----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~  348 (390)
T PRK03545        292 ----------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALL  348 (390)
T ss_pred             ----------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  134455566777788877777777777878877 578999999999999999999999


Q ss_pred             HHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 043156          504 VNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSS  554 (578)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  554 (578)
                      .|.+.+.                  .+++..|+..+.+.++++++++...+
T Consensus       349 ~G~~~~~------------------~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        349 GNQVSLH------------------LGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHhc------------------cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9987621                  24567899999999998888877765

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.94  E-value=2.1e-25  Score=236.03  Aligned_cols=380  Identities=14%  Similarity=0.075  Sum_probs=252.8

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhh
Q 043156           21 KHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISG  100 (578)
Q Consensus        21 ~~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~  100 (578)
                      .++.+|  ++++...++...+.+.+.++++.|+++++|+|..+.|.+.+...+...+..+++|+++||+ |||+++.++.
T Consensus         7 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~   83 (400)
T PRK11646          7 ARNLGK--YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGM   83 (400)
T ss_pred             cccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHH
Confidence            345566  6677889999999999999999999999999999999999999999999999999999998 9999999999


Q ss_pred             hhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHH
Q 043156          101 SVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIG  180 (578)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG  180 (578)
                      ++..++.++.          ...++.+.+++.|++.|++.+...|+..+++.|.+|+++      |++++++++...++|
T Consensus        84 ~~~~~~~~~~----------~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g  147 (400)
T PRK11646         84 LMRAAGFATM----------AIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAG  147 (400)
T ss_pred             HHHHHHHHHH----------HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHH
Confidence            8888665543          334577888899999999999888999999999999876      999999999999999


Q ss_pred             HHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhh
Q 043156          181 GAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYE  260 (578)
Q Consensus       181 ~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (578)
                      ..+||.+++++. .++|++.|++.++..++..+...+..++.+. ++.. ++.                          .
T Consensus       148 ~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~-~~~--------------------------~  198 (400)
T PRK11646        148 AVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVR-TPV--------------------------R  198 (400)
T ss_pred             HHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccc-hhh--------------------------H
Confidence            999999999998 6799999998877655554433332221100 0000 000                          0


Q ss_pred             hchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhcc-
Q 043156          261 INMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQL-  339 (578)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-  339 (578)
                                                                ..++    +..++++ .......   ...++....+. 
T Consensus       199 ------------------------------------------~~~~----~~~~~~~-~~~~~~~---~~~~~~~~~~~~  228 (400)
T PRK11646        199 ------------------------------------------EGMT----RVLRDKR-FVTYVLT---LTGYYMLAVQVM  228 (400)
T ss_pred             ------------------------------------------HHHH----HHHcCch-HHHHHHH---HHHHHHHHHHHH
Confidence                                                      0000    0001111 1111111   11111111111 


Q ss_pred             --chhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHH
Q 043156          340 --QTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAI  417 (578)
Q Consensus       340 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~  417 (578)
                        .+.+..+..+.+        ...+.+.+.+.+..+.+....+++.++   |.       +..+.+..+.++.+++++.
T Consensus       229 ~~~p~~~~~~~~~~--------~~~g~l~~~~~~~~~~~~~~~~~~~~~---r~-------~~~~~~~~~~~~~~~~~~~  290 (400)
T PRK11646        229 LMLPIMVNDIAGSP--------SAVKWMYAIEACLSLTLLYPIARWSEK---RF-------RLEHRLMAGLLIMSLSMFP  290 (400)
T ss_pred             HhhhhhHHhhcCCc--------hHHHHHHHHHHHHHHHHHHHHHHHHHH---hc-------chhHHHHHHHHHHHHHHHH
Confidence              122212111101        111223333333333333333444432   21       1123566677777777766


Q ss_pred             HHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHH
Q 043156          418 AAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGY  497 (578)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~  497 (578)
                      ++...                        +.++++...++.+++.+...|...+++.+.+|++.||+++|+.+....+|.
T Consensus       291 l~~~~------------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~  346 (400)
T PRK11646        291 IGMVS------------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGG  346 (400)
T ss_pred             HHHhh------------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHH
Confidence            55433                        233444455677888888889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 043156          498 FFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSS  554 (578)
Q Consensus       498 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  554 (578)
                      .+|+.+.+.+.+.+.+              .+.....|+..+++++++.+......+
T Consensus       347 ~ig~~l~G~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (400)
T PRK11646        347 AIGYIGGGWLFDLGKA--------------LNQPELPWMMLGIIGLITLLALYWQFS  389 (400)
T ss_pred             HhcccchHHHHHHHhh--------------cCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988743310              011234566667777777666554333

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.94  E-value=6.6e-25  Score=232.55  Aligned_cols=387  Identities=16%  Similarity=0.079  Sum_probs=251.7

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      +.++..+.+..+..+.+.+..+......+ .+.+++|+|..+.+++.+.+.++..++.++.|+++||+ ||||++.++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence            34555666666677777777666555554 56788999999999999999999999999999999998 99999999988


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      +..++.++.          ....++..+++.|++.|++.+...+...+++.|++|+++      |++++++.+.+.++|.
T Consensus        89 ~~~~~~~~~----------~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~  152 (406)
T PRK11551         89 LFGLFSLAT----------AQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGG  152 (406)
T ss_pred             HHHHHHHHH----------HHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHH
Confidence            777554432          334678888999999999999999999999999999876      9999999999999999


Q ss_pred             HHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhh
Q 043156          182 AISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEI  261 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (578)
                      .++|.+++.+.+..+|++.|++.+++.++..+......++.++.++++ .                  . .+.       
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~------------------~-~~~-------  205 (406)
T PRK11551        153 ALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAA-G------------------A-GKQ-------  205 (406)
T ss_pred             HHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhcc-C------------------c-chh-------
Confidence            999999999988889999999877665444433333222211100000 0                  0 000       


Q ss_pred             chhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccch
Q 043156          262 NMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQT  341 (578)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~  341 (578)
                                       .....+..                  +     +..+.++........+.....++....+.+.
T Consensus       206 -----------------~~~~~~~~------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  245 (406)
T PRK11551        206 -----------------RAPVLRAL------------------F-----GEGRATATLLLWISYFFTLIVLYFLLNWLPS  245 (406)
T ss_pred             -----------------hhhhHHHH------------------h-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             00000000                  0     0000111111111111112222222222222


Q ss_pred             hhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHH
Q 043156          342 FSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIF  421 (578)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~  421 (578)
                      +...  .+.+       ....+.+.....+..++...+.+++.||+++|           +.+.++.+...++++.....
T Consensus       246 ~~~~--~g~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~  305 (406)
T PRK11551        246 LLVG--QGLS-------RSQAGLVQIAFNIGGALGSLLIGALMDRLRPR-----------RVVLLIYAGILASLAALAAA  305 (406)
T ss_pred             HHHh--CCCC-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHhc
Confidence            2211  1111       11233445555667778888888888887766           23344444444444433331


Q ss_pred             HHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHH
Q 043156          422 EVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFST  501 (578)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~  501 (578)
                      .                        +.+.+.+..++.+++.....+...++..+.+|++.||++.|+.+....+|+.+++
T Consensus       306 ~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~  361 (406)
T PRK11551        306 P------------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGP  361 (406)
T ss_pred             C------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHh
Confidence            1                        3334445556677777777888889999999999999999999999999999999


Q ss_pred             HHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 043156          502 ILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSS  554 (578)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  554 (578)
                      .+.+.+.+..                 +.+...++..+.+.+++.+..+...+
T Consensus       362 ~~~g~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK11551        362 LLAGQLLALG-----------------RSTVGVIGASIPVILVAALAALLLVS  397 (406)
T ss_pred             hhHhhhhccC-----------------CchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9998876311                 22345566666666666666555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.94  E-value=1e-24  Score=243.03  Aligned_cols=155  Identities=14%  Similarity=0.051  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccch
Q 043156           46 GVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSD  125 (578)
Q Consensus        46 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (578)
                      ...+.+++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++++++++.+++.++.          ....+
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~----------afa~s  254 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFS----------SFVQG  254 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHH----------HHHhh
Confidence            34455677889999999999999999999999999999999998 99999999988888665553          34567


Q ss_pred             hHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Q 043156          126 AALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDN-----------  194 (578)
Q Consensus       126 ~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~-----------  194 (578)
                      +..++++|++.|++.|+..|...++++|++|++.      |++.++++.....+|.++++.++.++..+           
T Consensus       255 ~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~  328 (742)
T TIGR01299       255 YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY  328 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccc
Confidence            8889999999999999999999999999999876      99999999999999999999887665432           


Q ss_pred             --cCchhHHHHHHHHHHHHHHHHHh
Q 043156          195 --KGWDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       195 --~g~~~~f~i~~~~~~~~~~~~~~  217 (578)
                        .+||+.|++.++..++.++..++
T Consensus       329 ~~~gWR~l~~i~~lp~ll~ll~~~~  353 (742)
T TIGR01299       329 QFHSWRVFVIVCAFPCVFAIGALTF  353 (742)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHH
Confidence              36899888887776666554444

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.94  E-value=1.6e-24  Score=235.57  Aligned_cols=402  Identities=13%  Similarity=0.067  Sum_probs=251.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      +..+..+++..++..+..-.+.+.+| .+.+++|.+.++.+|+.+.+.++..++.++.|+++||+ |||+++.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~   82 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            44566777777777777666666665 45689999999999999999999999999999999998 99999999999998


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      ++.+++          ...++.+.++++|+++|+|.+...|.....+.+.+++++     +|+++++++....++|..+|
T Consensus        83 ~~~~~~----------~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~g  147 (495)
T PRK14995         83 LASLAA----------AFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFG  147 (495)
T ss_pred             HHHHHH----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHH
Confidence            776664          456788999999999999999988888887877775432     39999999999999999999


Q ss_pred             HHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHH---HHH--HHHHHHhcccCCCCCchhhh
Q 043156          185 VTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEI---IQV--YVAAIRNRKLELPEDPMELY  259 (578)
Q Consensus       185 p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~  259 (578)
                      |.+++++.+++|||+.|++...+.++.+++.....++.+.+++++.......   ...  +....++.............
T Consensus       148 p~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  227 (495)
T PRK14995        148 PLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSL  227 (495)
T ss_pred             HHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence            9999999999999999999887766655554444443222111110111100   000  01111100000000000000


Q ss_pred             hhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHH-HHHHHHHHHHHhhhc
Q 043156          260 EINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMI-PIFCCTIVMTLCLAQ  338 (578)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~~~~~  338 (578)
                      ..                 .............+.      ....|...  .+-.++ |...... ..++....++. ...
T Consensus       228 ~~-----------------~~~~~~l~~f~~~e~------~~~~p~~~--~~lf~~-~~~~~~~~~~~~~~~~~~~-~~~  280 (495)
T PRK14995        228 TL-----------------LTGALLLGLFIRTQL------AASRPMID--MRLFTH-RIILSGVVMAMTAMITLVG-FEL  280 (495)
T ss_pred             HH-----------------HHHHHHHHHHHHHHh------cCCCCCcC--HHHhCC-cccHHHHHHHHHHHHHHHH-HHH
Confidence            00                 000000000000000      00112110  001111 1111111 11111111111 111


Q ss_pred             cchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHH
Q 043156          339 LQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIA  418 (578)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~  418 (578)
                      +.+.+.+...+.+       ....+.......+...+..++.+++.||+++|           +.+..|+++..++++.+
T Consensus       281 ~~~~~lq~v~g~s-------~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~g~~~~~~~~~~l  342 (495)
T PRK14995        281 LMAQELQFVHGLS-------PLEAGMFMLPVMVASGFSGPIAGILVSRLGLR-----------LVATGGMALSALSFYGL  342 (495)
T ss_pred             HHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHHHH
Confidence            1122222211211       12233444555677888889999998877765           35566887777777655


Q ss_pred             HHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHH
Q 043156          419 AIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYF  498 (578)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~  498 (578)
                      ....                     ...+.+......++.|+|.+...++....+.+.+|++.+|.+.+++++.+++|+.
T Consensus       343 ~~~~---------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~  401 (495)
T PRK14995        343 AMTD---------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAG  401 (495)
T ss_pred             HHhc---------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHH
Confidence            4432                     1123344556678889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q 043156          499 FSTILVNIVNS  509 (578)
Q Consensus       499 lg~~~~~~~~~  509 (578)
                      +|+.+.+.+..
T Consensus       402 ~G~ai~g~i~~  412 (495)
T PRK14995        402 LGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHH
Confidence            99998887743

>PRK10504 putative transporter; Provisional

Probab=99.93  E-value=3.1e-24  Score=232.04  Aligned_cols=402  Identities=13%  Similarity=0.081  Sum_probs=248.4

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156           24 GIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE  103 (578)
Q Consensus        24 ~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~  103 (578)
                      +.|..+.+.+..++..+..+.+.+.+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+ ||||+++.+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~   85 (471)
T PRK10504          8 VRWQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLF   85 (471)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHH
Confidence            355678888888888888888888887776 57999999999999999999999999999999998 9999999888777


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      .++.++.          ....+...+++.|+++|++.+...|...+++.|.+|+++      |++++++.+...++|..+
T Consensus        86 ~~~~~~~----------~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~  149 (471)
T PRK10504         86 TLGSLFC----------ALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLL  149 (471)
T ss_pred             HHHHHHH----------HHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHh
Confidence            7554442          234677888999999999999999999999999999775      999999999999999999


Q ss_pred             HHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcch--HHHHHHHHHHHH--HhcccCCCCCchhhh
Q 043156          184 SVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSV--LIEIIQVYVAAI--RNRKLELPEDPMELY  259 (578)
Q Consensus       184 ~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~  259 (578)
                      +|.+++++.++.|||+.|++......++.+......++.+.++++.+..  ............  .+.... .-.+....
T Consensus       150 g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  228 (471)
T PRK10504        150 GPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGL-GLSPLAIA  228 (471)
T ss_pred             hhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcC-CcchHHHH
Confidence            9999999999899999999987776666555554444332221111011  000111111100  000000 00000000


Q ss_pred             hhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHH-HHHHHHHHHhhhc
Q 043156          260 EINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPI-FCCTIVMTLCLAQ  338 (578)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~~~~~  338 (578)
                      .....- ...         ...+..+.  +.. .      +...+++      ....|.....+.. ++.... ......
T Consensus       229 ~~~~~~-~~~---------~~~~~~~~--~~~-~------~~~~~~~------l~~~~~~~~~l~~~~~~~~~-~~~~~~  282 (471)
T PRK10504        229 GLVAVG-VVA---------LLLYLLHA--RNN-N------RALFSLK------LFRTRTFSLGLAGSFAGRIG-SGMLPF  282 (471)
T ss_pred             HHHHHH-HHH---------HHHHHHHH--hcC-C------CCccCHH------HhcccchHHHHHHHHHHHHH-HHHHHH
Confidence            000000 000         00000000  000 0      0000111      1111121111111 111111 111122


Q ss_pred             cchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHH
Q 043156          339 LQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIA  418 (578)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~  418 (578)
                      ..+++.++..+.+.       ...+.......+..+...++.+++.||+++|           +.+.+|.++..++.+++
T Consensus       283 ~~~~~~~~~~g~~~-------~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~~~  344 (471)
T PRK10504        283 MTPVFLQIGLGFSP-------FHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR-----------RVLVATTLGLALVSLLF  344 (471)
T ss_pred             HHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHHHH
Confidence            22333332111111       1122333334455566668888888887766           35556666666665544


Q ss_pred             HHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHH
Q 043156          419 AIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYF  498 (578)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~  498 (578)
                      ....                     ...+.+++...+++.|++.++..+..+.+..+.+|++.+|.+++++++.+.+|..
T Consensus       345 ~~~~---------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~  403 (471)
T PRK10504        345 MLVA---------------------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMS  403 (471)
T ss_pred             Hhcc---------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHH
Confidence            4321                     0112333444567778888888888889999999999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q 043156          499 FSTILVNIVNS  509 (578)
Q Consensus       499 lg~~~~~~~~~  509 (578)
                      +|+.+.+.+..
T Consensus       404 ig~~i~g~ll~  414 (471)
T PRK10504        404 IGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHHHH
Confidence            99999887754

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=6.4e-25  Score=231.85  Aligned_cols=355  Identities=12%  Similarity=0.091  Sum_probs=237.8

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      .+.+|..+.++...++...+++...++++.|+++++|+|..+.|++.+.+.+++.++.++.|+++||+ |||+++.++.+
T Consensus         3 ~~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~   81 (395)
T PRK10054          3 LSLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAIT   81 (395)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHH
Confidence            34577888899999999999999999999999999999999999999999999999999999999998 99999998887


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      +..++.++.          ...++.+.+++.+.+.+.+.+...++..++..|.+|+++      |++++++.+...++|.
T Consensus        82 ~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~  145 (395)
T PRK10054         82 AFASGFIAI----------PLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGW  145 (395)
T ss_pred             HHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHH
Confidence            776554332          334566777778888888877778888899999998776      9999999999999999


Q ss_pred             HHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhh
Q 043156          182 AISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEI  261 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (578)
                      +++|.+++++.+ .+|+.+|++.+++.++..+...+..++.+++++++ +.                      +    . 
T Consensus       146 ~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-~~----------------------~----~-  196 (395)
T PRK10054        146 TVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-TG----------------------S----V-  196 (395)
T ss_pred             HHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-hh----------------------h----h-
Confidence            999999999875 68999999888776666544433322211110000 00                      0    0 


Q ss_pred             chhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhH-HHHHHHHHHHHHhhhccc
Q 043156          262 NMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGM-IPIFCCTIVMTLCLAQLQ  340 (578)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~  340 (578)
                                          + +..                        +..++ |+.... ...++....+........
T Consensus       197 --------------------~-~~~------------------------~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~  230 (395)
T PRK10054        197 --------------------W-SPS------------------------VLLQD-KALLWFTCSGFLASFVSGAFASCIS  230 (395)
T ss_pred             --------------------h-hhh------------------------hhccC-ceehHHHHHHHHHHHHHHHhhhhHH
Confidence                                0 000                        00001 111111 111111111111111111


Q ss_pred             hhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHH
Q 043156          341 TFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAI  420 (578)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~  420 (578)
                      .+.... .  +....   ....+.+...+.+..+...+..+++.||..+|           +.+..|+++..++++....
T Consensus       231 ~~~~~~-~--~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~  293 (395)
T PRK10054        231 QYVMVV-A--DSDFA---EKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR-----------PLMTAGTLCFVIGLVGFIF  293 (395)
T ss_pred             HHHHHh-c--ccchH---HHHHHHHHHhhhhheeeehhHHHHHHccCCch-----------hHHHHHHHHHHHHHHHHHH
Confidence            111111 1  11110   01112333344444444455556666554443           4566677777777665544


Q ss_pred             HHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHH
Q 043156          421 FEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFS  500 (578)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg  500 (578)
                      ..                       .+.+.+.+..++.++|++...|...+++.+.+|++.||++.+..+ ...+|..+|
T Consensus       294 ~~-----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~G  349 (395)
T PRK10054        294 SG-----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAIN  349 (395)
T ss_pred             cc-----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHH
Confidence            21                       133344556788999999989999999999999999999998766 566899999


Q ss_pred             HHHHHhhhc
Q 043156          501 TILVNIVNS  509 (578)
Q Consensus       501 ~~~~~~~~~  509 (578)
                      |.+.+.+.+
T Consensus       350 p~~~G~l~~  358 (395)
T PRK10054        350 PLVSGVILT  358 (395)
T ss_pred             HHHHHHHHH
Confidence            999998873

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.93  E-value=2.8e-24  Score=228.77  Aligned_cols=397  Identities=12%  Similarity=0.017  Sum_probs=250.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPP  107 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~  107 (578)
                      ...++...++..++.......+|.+. ++++.+..+.|++.+.+.++..++.++.|+++||+ ||||++.++.++.+++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~   96 (417)
T PRK10489         19 FRAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGF   96 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHH
Confidence            33445556666666665666666665 56788999999999999999999999999999998 99999988876665443


Q ss_pred             cccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 043156          108 PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTL  187 (578)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l  187 (578)
                      +...     .......++...+++.|++.|++.+...++..+++.|.+|+++      |+++.++.+...++|..+||.+
T Consensus        97 ~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l  165 (417)
T PRK10489         97 IGLA-----LNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPAL  165 (417)
T ss_pred             HHHH-----HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHH
Confidence            2210     0000123566778889999999988888888999999999876      9999999999999999999999


Q ss_pred             HHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhh
Q 043156          188 IVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEA  267 (578)
Q Consensus       188 ~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (578)
                      ++++.+..+|++.|++.++..+++.+..+.. ++.+.+++++                       +++.   +       
T Consensus       166 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~-----------------------~~~~---~-------  211 (417)
T PRK10489        166 GGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALPPPPQPR-----------------------EHPL---R-------  211 (417)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCCccc-----------------------ccch---H-------
Confidence            9999888899999988777666555443332 2111000000                       0000   0       


Q ss_pred             hhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhh
Q 043156          268 AIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQG  347 (578)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (578)
                                   +..+                   .++     .....+.+.......+............ +.+..+.
T Consensus       212 -------------~~~~-------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~  253 (417)
T PRK10489        212 -------------SLLA-------------------GFR-----FLLASPVVGGIALLGGLLTMASAVRVLY-PALADEV  253 (417)
T ss_pred             -------------HHHH-------------------HHH-----HHHcChHHHHHHHHHHHHHHHHhHHHhh-HHHHHhc
Confidence                         0000                   000     0000111111111111111111111111 2222211


Q ss_pred             ccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHh
Q 043156          348 LTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKD  427 (578)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~  427 (578)
                      .+.+       ....+.+.....+..++...+.+++.|+..++           +.+..+.++.+++++......     
T Consensus       254 ~g~~-------~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~~-----  310 (417)
T PRK10489        254 WQMG-------AAQIGLLYAAVPLGAALGALTSGWLAHSARPG-----------LLMLLSTLGSFLAVGLFGLMP-----  310 (417)
T ss_pred             cCCC-------hhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc-----------hHHHHHHHHHHHHHHHHHccc-----
Confidence            1111       11233444555666667777776665431111           345566666666665544322     


Q ss_pred             hhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043156          428 VARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIV  507 (578)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~  507 (578)
                                         +.+......++.+++.+...+...++..+.+|++.||++.|+++....+|..+|+.+.+.+
T Consensus       311 -------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l  371 (417)
T PRK10489        311 -------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGL  371 (417)
T ss_pred             -------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Confidence                               3444555667778888877788888999999999999999999999999999999999988


Q ss_pred             hccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccccccccccCCccc
Q 043156          508 NSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSVGGTAC  569 (578)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~  569 (578)
                      .+..                  ++...++..+++.++..++.+...++++++++|+.+.+..
T Consensus       372 ~~~~------------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (417)
T PRK10489        372 GAMM------------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDAS  415 (417)
T ss_pred             HHHh------------------chhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence            7321                  2234566677666666666666667777777666655443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.93  E-value=3.1e-24  Score=229.63  Aligned_cols=167  Identities=11%  Similarity=0.020  Sum_probs=137.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPP  107 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~  107 (578)
                      .+..++..+...+..+.....++ .+.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~  102 (434)
T PRK11663         25 LITMYLGYALFYFTRKSFNAAMP-EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIIN  102 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHH
Confidence            33444444444444444445555 44567999999999999999999999999999999998 99999999998888665


Q ss_pred             cccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 043156          108 PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTL  187 (578)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l  187 (578)
                      ++.          ....++..+++.|++.|++.|...+...+++.|++|+++      |++++++++.+.++|..++|.+
T Consensus       103 ~~~----------~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~  166 (434)
T PRK11663        103 ILF----------GFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLV  166 (434)
T ss_pred             HHH----------HHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            553          345678888899999999999888999999999999876      9999999999999999999999


Q ss_pred             HHHhccccCchhHHHHHHHHHHHHH
Q 043156          188 IVWIQDNKGWDRGFGLSSVAVFLAT  212 (578)
Q Consensus       188 ~~~l~~~~g~~~~f~i~~~~~~~~~  212 (578)
                      ++++.+.+|||+.|++.++..++..
T Consensus       167 ~~~l~~~~gw~~~f~~~~i~~~~~~  191 (434)
T PRK11663        167 VGAIALHYGWRYGMMIAGIIAIVVG  191 (434)
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHH
Confidence            9999988999999998877655443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.93  E-value=2.7e-24  Score=232.91  Aligned_cols=428  Identities=10%  Similarity=0.045  Sum_probs=246.4

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhh
Q 043156           24 GIKTSLLILAAFGFENLATIALGVNLVTYFNGVL--------HLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKA   95 (578)
Q Consensus        24 ~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~l--------g~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~   95 (578)
                      +.+.++...+..+...+....+.+.. ..+++.+        |.+..+.+++.+.+.++..++.++.|+++||+ ||||+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~   87 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTV-ESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDS   87 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhH-HHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHH
Confidence            44555555555555544433333333 3345554        88999999999999999999999999999998 99999


Q ss_pred             hhhhhhhhccCCcccccCCCCCcc---ccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHH
Q 043156           96 VLISGSVEFLPPPCNVFDPTAGCK---KIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNL  172 (578)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~  172 (578)
                      ++++.+++.++.+...+. .....   .........++++|+++|++.|...|...++++|++|+++      |++++++
T Consensus        88 ~~~~~~l~~i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~  160 (479)
T PRK10077         88 LKIAAVLFFISALGSAWP-EFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSF  160 (479)
T ss_pred             HHHHHHHHHHHHHHHHhh-ccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHH
Confidence            999988877554432100 00000   0111335677899999999999999999999999999887      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc--------cccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHH
Q 043156          173 LFLAVCIGGAISVTLIVWIQ--------DNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAI  244 (578)
Q Consensus       173 ~~~~~~lG~~~~p~l~~~l~--------~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (578)
                      ...+..+|..+++.+++.+.        +.+|||++|++.++..++..+..++. ++.++....+ .+.++..+..... 
T Consensus       161 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l-~~s~~~l~~~-~~~~~~~~~~~~~-  237 (479)
T PRK10077        161 NQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFV-PETPRYLMSR-GKQEQAEGILRKI-  237 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHc-CCHHHHHHHHHHH-
Confidence            99999999999987776543        35689999998877666655443332 2211100000 0000000000000 


Q ss_pred             HhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHH-
Q 043156          245 RNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMI-  323 (578)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-  323 (578)
                           ..++                        ...+..+..+...                  . +..+..+..+... 
T Consensus       238 -----~~~~------------------------~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~  269 (479)
T PRK10077        238 -----MGNT------------------------LATQALQEIKHSL------------------D-HGRKTGGKLLMFGV  269 (479)
T ss_pred             -----cCCh------------------------hHHHHHHHHHHHH------------------H-HhhhhhhhhcchhH
Confidence                 0000                        0000000000000                  0 0000000111100 


Q ss_pred             -HHH-HHHHHHHHhhhccc------hhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCC
Q 043156          324 -PIF-CCTIVMTLCLAQLQ------TFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNP  395 (578)
Q Consensus       324 -~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~  395 (578)
                       .+. ......+..+....      +.+... .+.+.       ...........+..++..++.+++.||+++|     
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~-------~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r-----  336 (479)
T PRK10077        270 GVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGAST-------DIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----  336 (479)
T ss_pred             HHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCC-------chHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----
Confidence             000 00111111000000      111111 11111       0112233334566677788888888888777     


Q ss_pred             CCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHH-Hhhhhhheee
Q 043156          396 TGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMF-TYVGLLEFFY  474 (578)
Q Consensus       396 ~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~-~~~~~~~~~~  474 (578)
                            +.+..|.+++.++++++.....                    .+....+.....++.+++... +.|..+.++.
T Consensus       337 ------~~~i~~~~~~~v~~~~l~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (479)
T PRK10077        337 ------PLQIIGALGMAIGMFSLGTAFY--------------------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS  390 (479)
T ss_pred             ------HHHHHhHHHHHHHHHHHHHHHh--------------------cCcccHHHHHHHHHHHHHHhccccchhHHHhH
Confidence                  4667788888888777654320                    011122333333444444443 3477789999


Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 043156          475 SEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSS  554 (578)
Q Consensus       475 ~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  554 (578)
                      |.+|+++||+++|+.+...++++.+++.+.+.+..        .+|+. +   ..++...|++.++++++++++.+++.+
T Consensus       391 e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~--------~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (479)
T PRK10077        391 EIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDK--------NSWLV-A---HFHNGFSYWIYGCMGVLAALFMWKFVP  458 (479)
T ss_pred             hhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh--------ccchh-h---hccCccHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999888776541        12221 1   122335678888888888877777767


Q ss_pred             cccccccc
Q 043156          555 RYNYRPQT  562 (578)
Q Consensus       555 ~~~~~~~~  562 (578)
                      +.++++.|
T Consensus       459 e~~~~~~~  466 (479)
T PRK10077        459 ETKGKTLE  466 (479)
T ss_pred             cCCCCCHH
Confidence            66655444

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.93  E-value=7e-24  Score=231.08  Aligned_cols=181  Identities=13%  Similarity=0.084  Sum_probs=133.3

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhh
Q 043156           23 GGIKTSLLILAAFGFENLATIALGVNLVTYFNGV-----LHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVL   97 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~   97 (578)
                      .+.+.+.+..+..+...+....+....+. +..+     .+.+..+.+++.+.+.++..++.++.|+++||+ |||+++.
T Consensus        13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~   90 (502)
T TIGR00887        13 QHFRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYG   90 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHH
Confidence            34445555555555555554444444443 3332     245566789999999999999999999999998 9999999


Q ss_pred             hhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHH
Q 043156           98 ISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAV  177 (578)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~  177 (578)
                      ++++++.++.++..+++.    .....+...++++|+++|++.|...+..+.+++|.+|+++      |+++.++.+...
T Consensus        91 ~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~  160 (502)
T TIGR00887        91 MELIIMIIATVASGLSPG----SSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQ  160 (502)
T ss_pred             HHHHHHHHHHHHHHHccC----cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHH
Confidence            998888866554310000    0000125789999999999999999999999999999997      999999999999


Q ss_pred             HHHHHHHHHHHHHhcc-----------------------ccCchhHHHHHHHHHHHHHHHH
Q 043156          178 CIGGAISVTLIVWIQD-----------------------NKGWDRGFGLSSVAVFLATIIF  215 (578)
Q Consensus       178 ~lG~~~~p~l~~~l~~-----------------------~~g~~~~f~i~~~~~~~~~~~~  215 (578)
                      .+|..+++.++.++..                       .++||++|.+.++..++..+..
T Consensus       161 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~  221 (502)
T TIGR00887       161 GFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR  221 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999988765531                       2479999988777665554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.93  E-value=1.4e-23  Score=223.01  Aligned_cols=179  Identities=16%  Similarity=0.110  Sum_probs=148.5

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhh
Q 043156           23 GGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV  102 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~  102 (578)
                      .+++.++.+.+..+++......+. +....+++++|++.++.+++.+.+.++..++.++.|+++||+ ||||++..++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~   82 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIG-FAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVL   82 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHH-HHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHH
Confidence            356666666666666666655544 444589999999999999999999999999999999999998 999999999988


Q ss_pred             hccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                      +.++.++.          ...++...+++.|++.|++.+...|....++.|++|+++      |++.+++++.+.++|..
T Consensus        83 ~~~~~~~~----------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~  146 (412)
T TIGR02332        83 WGIASTAT----------MFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMA  146 (412)
T ss_pred             HHHHHHHH----------HHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHH
Confidence            88766554          445778889999999999999999998899999999876      99999999999999999


Q ss_pred             HHHHHHHHhcc------ccCchhHHHHHHHHHHHHHHHHHhcC
Q 043156          183 ISVTLIVWIQD------NKGWDRGFGLSSVAVFLATIIFAAGL  219 (578)
Q Consensus       183 ~~p~l~~~l~~------~~g~~~~f~i~~~~~~~~~~~~~~~~  219 (578)
                      ++|.+++++.+      ..|||+.|++.++..++..++.++..
T Consensus       147 ~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~  189 (412)
T TIGR02332       147 LGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWL  189 (412)
T ss_pred             HHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhcc
Confidence            99999998863      36899999998777655544444433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.93  E-value=1.3e-24  Score=234.73  Aligned_cols=183  Identities=10%  Similarity=-0.074  Sum_probs=137.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhh
Q 043156           23 GGIKTSLLILAAFGFENLATIALG---VNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLIS   99 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~---~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~   99 (578)
                      .+.|..+.+....++.....|...   ......+.+++|+|.++.|++.+.+.+++.++.+++|+++||+ ||||++.++
T Consensus        22 ~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~  100 (467)
T PRK09556         22 MWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFL  100 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHH
Confidence            333434444444444444444332   2334567899999999999999999999999999999999998 999999888


Q ss_pred             hhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH
Q 043156          100 GSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI  179 (578)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l  179 (578)
                      .+++++..++..     ......+.+...+++.|+++|++.+...|+..++++|++|+++      |+++++++..+.++
T Consensus       101 ~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~l  169 (467)
T PRK09556        101 LILSAICMLGFG-----ASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNL  169 (467)
T ss_pred             HHHHHHHHHHHH-----HHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccch
Confidence            777664433220     0001234678899999999999999999999999999999987      99999999999999


Q ss_pred             HHHHHHHHHHHhcccc---CchhHHHHHHHHHHHHHHHHHh
Q 043156          180 GGAISVTLIVWIQDNK---GWDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       180 G~~~~p~l~~~l~~~~---g~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      |.++++.+..++.+..   +|+..|.+.+++.++..+..++
T Consensus       170 G~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~  210 (467)
T PRK09556        170 GGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLR  210 (467)
T ss_pred             hhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence            9999999887776542   5999888877765544444333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.93  E-value=6.4e-24  Score=224.91  Aligned_cols=382  Identities=12%  Similarity=0.054  Sum_probs=251.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAE-----AANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISG  100 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-----~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~  100 (578)
                      |....+.+..++...++....++++.|.+ ++|.+..+     .+++.+.+.+...++.++.|+++||+ |||+++.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~   91 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA   91 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence            44666667788888888888888888874 68888654     48889999999999999999999998 9999999988


Q ss_pred             hhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHH
Q 043156          101 SVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIG  180 (578)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG  180 (578)
                      +...++.++.          ....+.+.+++.|++.|++.+ ..+....++.|.+|+++      |+++.++++...++|
T Consensus        92 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g  154 (408)
T PRK09874         92 LGMGIVMVLM----------GLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLSTGGVSG  154 (408)
T ss_pred             HHHHHHHHHH----------HHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHH
Confidence            8777554442          334678888999999999865 45777788899998776      999999999999999


Q ss_pred             HHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhh
Q 043156          181 GAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYE  260 (578)
Q Consensus       181 ~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (578)
                      ..++|.+++.+.+.++|++.|++.+++.++..+..+...++.++.++++ +..                          +
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------------------~  207 (408)
T PRK09874        155 ALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK-EML--------------------------H  207 (408)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch-hhh--------------------------H
Confidence            9999999999988889999999988776655554443332211100000 000                          0


Q ss_pred             hchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHH-HHHHHHHHHHhhhcc
Q 043156          261 INMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIP-IFCCTIVMTLCLAQL  339 (578)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~  339 (578)
                                           ..+..                .        ..++++....... ...............
T Consensus       208 ---------------------~~~~~----------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
T PRK09874        208 ---------------------MREVV----------------T--------SLKNPKLVLSLFVTTLIIQVATGSIAPIL  242 (408)
T ss_pred             ---------------------HHHHH----------------H--------hCcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 00000                0        0000111111111 011111111111111


Q ss_pred             chhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHH
Q 043156          340 QTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAA  419 (578)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~  419 (578)
                      +.+..+.. ......    ....+.+.....+..++..++.+++.||+.+|           +.+.++.++..++++...
T Consensus       243 ~~~~~~~~-~~~~~~----~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~  306 (408)
T PRK09874        243 TLYVRELA-GNVSNI----AFISGMIASVPGVAALLSAPRLGKLGDRIGPE-----------KILITALIFSVLLLIPMS  306 (408)
T ss_pred             HHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHHHHHH
Confidence            11111111 100000    00012233344566677788888888887766           345556655555554443


Q ss_pred             HHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHH
Q 043156          420 IFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFF  499 (578)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l  499 (578)
                      ...                        +.+.+.+..++.+++.+...|...++..+..|++.+|+..++++....+|..+
T Consensus       307 ~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~  362 (408)
T PRK09874        307 FVQ------------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVT  362 (408)
T ss_pred             Hhc------------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHh
Confidence            322                        34445556677899999889998888889999999999999999999999999


Q ss_pred             HHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 043156          500 STILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRY  556 (578)
Q Consensus       500 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~  556 (578)
                      |+.+.+.+.+                  ..+|+..|++.+++.+++.+..+...+|.
T Consensus       363 gp~~~G~l~~------------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~  401 (408)
T PRK09874        363 GPLMGAAISA------------------NYGFRAVFLVTAGVVLFNAVYSWNSLRRR  401 (408)
T ss_pred             hHHHHHHHHh------------------hcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999987762                  12466789999988888887776654443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=2.2e-23  Score=220.12  Aligned_cols=180  Identities=14%  Similarity=0.092  Sum_probs=153.6

Q ss_pred             cccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhh
Q 043156           16 PAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKA   95 (578)
Q Consensus        16 ~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~   95 (578)
                      ..+...|.+|+....+.+..+.....-|...+.++. +.+++|++.++.++..+.+.++..++.++.|+++||+ ||||+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~   87 (394)
T PRK10213         10 GADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYV   87 (394)
T ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHH
Confidence            344556778888777777777776676666666665 5679999999999999999999999999999999998 99999


Q ss_pred             hhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHH
Q 043156           96 VLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFL  175 (578)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~  175 (578)
                      +.++.++..++.++.          ...++.+.+++.|+++|++.+...|...+++.|++|+++      |+++.++...
T Consensus        88 ~~~~~~~~~~~~~~~----------~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~  151 (394)
T PRK10213         88 VILFAVLLTLSCLLV----------SFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFG  151 (394)
T ss_pred             HHHHHHHHHHHHHHH----------HHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHH
Confidence            999999988665443          345788999999999999999999999999999999876      9999999999


Q ss_pred             HHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHH
Q 043156          176 AVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATI  213 (578)
Q Consensus       176 ~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~  213 (578)
                      +.++|..++|.+++++.+.+|||+.|++.+++.++..+
T Consensus       152 ~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        152 AVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999989999999988766554443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.92  E-value=3.3e-23  Score=221.60  Aligned_cols=174  Identities=17%  Similarity=0.161  Sum_probs=126.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHH---HHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLH---LDLAEAANQVTNY---MGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~~~~~~~~~---~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      +....+..+++.+.+.. .+++..++.++++   .+..+.+.+.+.+   .++..++.+++|+++||+ ||||++.++.+
T Consensus        24 ~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~  101 (432)
T PRK10406         24 IVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVC  101 (432)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence            33344456677777665 5667778888884   5565554544444   444458999999999998 99999999999


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      +++++.++..+.+..  ......++..+++.|+++|++.|...|...++++|++|+++      |++..++.+.+.+.|.
T Consensus       102 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~  173 (432)
T PRK10406        102 MMCFGSLVIACLPGY--ETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQ  173 (432)
T ss_pred             HHHHHHHHHhhcCCc--hhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHH
Confidence            998666553110000  00001234568899999999999999999999999999987      9999999988999998


Q ss_pred             HHHHHHHHHhc--------cccCchhHHHHHHHHHHHH
Q 043156          182 AISVTLIVWIQ--------DNKGWDRGFGLSSVAVFLA  211 (578)
Q Consensus       182 ~~~p~l~~~l~--------~~~g~~~~f~i~~~~~~~~  211 (578)
                      .+++.+...+.        ..+|||++|++.++..++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        174 LLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            88887765543        2579999999877665443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.92  E-value=8.3e-24  Score=227.65  Aligned_cols=411  Identities=13%  Similarity=0.082  Sum_probs=234.6

Q ss_pred             HHHHhcCCC--------HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCcccccc
Q 043156           52 YFNGVLHLD--------LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEG  123 (578)
Q Consensus        52 yl~~~lg~s--------~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (578)
                      .+..+++.+        ..+.+++.+.+.++..++.++.|+++||+ ||||+++++.+++.++.++..       .....
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~-------~~~~~  124 (481)
T TIGR00879        53 LPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMG-------LAAFA  124 (481)
T ss_pred             cHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHH-------Hhccc
Confidence            344555555        89999999999999999999999999998 999999999988886654431       11223


Q ss_pred             chhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHH---HHhccccCchhH
Q 043156          124 SDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLI---VWIQDNKGWDRG  200 (578)
Q Consensus       124 ~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~---~~l~~~~g~~~~  200 (578)
                      .+.+.+++.|+++|+|.+...+...++++|++|+++      |++++++++.+.++|..++|.++   +.+.+..+||+.
T Consensus       125 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~  198 (481)
T TIGR00879       125 LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP  198 (481)
T ss_pred             cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHH
Confidence            345678999999999999999999999999999887      99999999999999999999998   766677899999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCcc
Q 043156          201 FGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIF  280 (578)
Q Consensus       201 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (578)
                      |++.++..++..+..++..+..+...+++ . ..+..+.....   +  ..++......+.                  .
T Consensus       199 f~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~~---~--~~~~~~~~~~~~------------------~  253 (481)
T TIGR00879       199 LGLQLIPAGLLFLGLFFLPESPRWLVGKG-R-VEEARKSLARL---R--GTSGEDKELLDE------------------L  253 (481)
T ss_pred             HHHHHHHHHHHHHHHhcCCCChHHHHHcC-C-hHHHHHHHHHH---h--CCCCCcHHHHHH------------------H
Confidence            99966655555444333322110000000 0 00000000000   0  000000000000                  0


Q ss_pred             chhhHhhhhccCccccccccCCCCCccccchhhhhHHHHH-h-HHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCce
Q 043156          281 RFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIIL-G-MIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSF  358 (578)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (578)
                      +..+.......       +.....|+..    ....++.. + .+...+..............+.......  ....   
T Consensus       254 ~~~~~~~~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~---  317 (481)
T TIGR00879       254 ELIDIKRSIEK-------RSVQPSWGSL----FSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN--AGVS---  317 (481)
T ss_pred             HHHHHHHHHHH-------hhccccHHHH----HhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH--cCCC---
Confidence            00000000000       0000001100    00001100 0 0001111111111111111111111111  1110   


Q ss_pred             eeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCC
Q 043156          359 HIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAI  438 (578)
Q Consensus       359 ~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (578)
                      ....+.......+..++..++.+++.||+.+|           +.+.++++++.+++++++...... .    +.     
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~----~~-----  376 (481)
T TIGR00879       318 TDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR-----------PLLLIGAAGMAICLFVLGILGASF-V----TG-----  376 (481)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHHhhcc-c----CC-----
Confidence            11122344445566777888888888887776           355667777777776665432100 0    00     


Q ss_pred             CCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCC
Q 043156          439 PVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSG  518 (578)
Q Consensus       439 ~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~  518 (578)
                         .....+..++....++.+.......+....+..+..|++.||+++|+.++..++|+.+++.+.+.+.+.        
T Consensus       377 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~--------  445 (481)
T TIGR00879       377 ---SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES--------  445 (481)
T ss_pred             ---cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence               000112223332333333333344577777888999999999999999999999999999998876521        


Q ss_pred             CCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 043156          519 GWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYR  559 (578)
Q Consensus       519 ~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~  559 (578)
                                .++...|++.++++++++++.+++.++.+++
T Consensus       446 ----------~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~  476 (481)
T TIGR00879       446 ----------IGVGGVFIFFGGLNVLGLIFVYFFLPETKGR  476 (481)
T ss_pred             ----------cCccceehhHHHHHHHHHHHHheecccCCCC
Confidence                      1234568888888888888887776655543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=4.8e-23  Score=210.32  Aligned_cols=381  Identities=14%  Similarity=0.098  Sum_probs=276.3

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      +..+..++.+.+..|....+=|.....+| -+.+++|.|..++|++++.|..+..++.|+-..+.||+ .||++++..+.
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp-~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLP-PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence            55678888899999988888887777665 66789999999999999999999999999999999998 99999999999


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      ++.++-++.          +.++++..++++|++.++..|.+++...++.++..|+++      |++++++...+..++.
T Consensus        87 lFi~~n~l~----------alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~  150 (394)
T COG2814          87 LFIVSNLLS----------ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLAT  150 (394)
T ss_pred             HHHHHHHHH----------HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHH
Confidence            999876664          667999999999999999999999999999999999997      9999999999999999


Q ss_pred             HHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCC-cchHHHHHHHHHHHHHhcccCCCCCchhhhh
Q 043156          182 AISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQG-SSVLIEIIQVYVAAIRNRKLELPEDPMELYE  260 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (578)
                      .+|..++.++.+.+|||+.|++.+.+.+++.+..+...|  +++.++. ..++.+.                      ..
T Consensus       151 v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~----------------------~~  206 (394)
T COG2814         151 VLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTL----------------------LR  206 (394)
T ss_pred             HHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHH----------------------HH
Confidence            999999999999999999999998888887777766655  1111111 0000000                      00


Q ss_pred             hchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccc
Q 043156          261 INMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQ  340 (578)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  340 (578)
                                                                         ..++.+-........+.....+..|.+..
T Consensus       207 ---------------------------------------------------~l~~p~v~~~l~~t~l~~~g~F~~ftYi~  235 (394)
T COG2814         207 ---------------------------------------------------LLRRPGVLLGLLATFLFMTGHFALYTYIR  235 (394)
T ss_pred             ---------------------------------------------------HhcCchHHHHHHHHHHHHcchhhhHHhHH
Confidence                                                               00011111122223344444444544444


Q ss_pred             hhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHH
Q 043156          341 TFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAI  420 (578)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~  420 (578)
                      +++.+.. +++.       ...++......+..+++..+.+++.|| ..|           +.+.....++.+.++.+.+
T Consensus       236 P~L~~v~-g~s~-------~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~-----------~~l~~~~~l~a~~~l~l~~  295 (394)
T COG2814         236 PFLESVA-GFSV-------SAVSLVLLAFGIAGFIGNLLGGRLADR-GPR-----------RALIAALLLLALALLALTF  295 (394)
T ss_pred             HHHHHcc-CCCH-------hHHHHHHHHHHHHHHHHHHHHhhhccc-cch-----------hHHHHHHHHHHHHHHHHHH
Confidence            4443322 1111       123345566778888888999999887 333           2445555677667666555


Q ss_pred             HHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHH
Q 043156          421 FEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFS  500 (578)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg  500 (578)
                      ..                       .+.+......++.+++........+.-..+.+ ++.++.+++++....++|..+|
T Consensus       296 ~~-----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~G  351 (394)
T COG2814         296 TG-----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALG  351 (394)
T ss_pred             hc-----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHH
Confidence            43                       13334444444456655444444444444433 5779999999999999999999


Q ss_pred             HHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 043156          501 TILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYN  557 (578)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~  557 (578)
                      ..+.+.+.+                  ..++....+..+++.+++.++.+...++.+
T Consensus       352 A~lGG~v~~------------------~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~  390 (394)
T COG2814         352 AALGGLVLD------------------ALGYAATGWVGAALLLLALLLALLSARKDR  390 (394)
T ss_pred             HHHHHHHHH------------------hhchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999998873                  145667888999999988888877665544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.92  E-value=2e-23  Score=218.66  Aligned_cols=384  Identities=11%  Similarity=0.027  Sum_probs=234.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchh
Q 043156           47 VNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDA  126 (578)
Q Consensus        47 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (578)
                      ....+++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++..+.          ....+.
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~----------~~~~~~   82 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQ----------AFAGAY   82 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHH----------HHHcCH
Confidence            3444568899999999999999999999999999999999998 99999999988877655443          334588


Q ss_pred             HHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHH
Q 043156          127 ALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSV  206 (578)
Q Consensus       127 ~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~  206 (578)
                      +.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++|.+++++.+..+|++.|++.++
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  156 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGV  156 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence            889999999999999999999999999999876      99999999999999999999999999888999999998887


Q ss_pred             HHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHh
Q 043156          207 AVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKA  286 (578)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (578)
                      ..++..+..++..++.+.+++.. .+..+                      ...   .+   ...    . +.       
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------------------~~~---~~---~~~----~-~~-------  195 (399)
T TIGR00893       157 LGIIWGVLWLKFIPDPPQKAKWL-TEEEK----------------------YIV---VG---GLL----A-EQ-------  195 (399)
T ss_pred             HHHHHHHHhhheecCCCCccccC-CHHHH----------------------hhc---ch---hhc----c-cc-------
Confidence            76655554443333221111100 00000                      000   00   000    0 00       


Q ss_pred             hhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCccc
Q 043156          287 AIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLP  366 (578)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (578)
                      +.+..         ....++.. .+..++ ++..............+.......+.+..+..+.+       ....+.+.
T Consensus       196 ~~~~~---------~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  257 (399)
T TIGR00893       196 QGKGP---------STPKKYQI-KELLKD-RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLS-------ILEAGFMA  257 (399)
T ss_pred             ccccc---------cCCCccch-HHHhcC-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc-------HHHhhHHH
Confidence            00000         00000000 000111 12211111111111111111111122222211111       11234455


Q ss_pred             CchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccc
Q 043156          367 ILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPI  446 (578)
Q Consensus       367 ~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (578)
                      ....+..++..++.+++.||+.+|..          .+........++.+.........                 ....
T Consensus       258 ~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~  310 (399)
T TIGR00893       258 SLPGIVGFIGMILGGRLSDLLLRRGK----------SLVFARKTAIIAGLVLSLLMFAT-----------------NYVN  310 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc----------chhHHHHHHHHHHHHHHHHHHHh-----------------ccch
Confidence            55667778888889999988887720          11111111111111111100000                 0011


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCC
Q 043156          447 STFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNI  526 (578)
Q Consensus       447 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (578)
                      +.+..+....+..++.+ ..+..+++..+.+|++.||+++|+.+....+|+.+++.+.+.+.+..               
T Consensus       311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~---------------  374 (399)
T TIGR00893       311 IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT---------------  374 (399)
T ss_pred             hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC---------------
Confidence            22223322333333333 68889999999999999999999999999999999999998776211               


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHhh
Q 043156          527 NRNHLNLFFWLLSALSFINFSVYLF  551 (578)
Q Consensus       527 ~~~~~~~~f~~~~~~~~i~~i~~~~  551 (578)
                        ++++..|++.+++.+++.+.+++
T Consensus       375 --g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       375 --GSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             --CchhHHHHHHHHHHHHHHHHHHH
Confidence              22567788888888887776654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.92  E-value=3.8e-23  Score=218.25  Aligned_cols=360  Identities=13%  Similarity=0.039  Sum_probs=241.6

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccc
Q 043156           43 IALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIE  122 (578)
Q Consensus        43 ~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (578)
                      +.+.+.+| .+++++|+|.++.+++.+.+.++..++.++.|+++||+ ||||++..+.++++++.++.          +.
T Consensus        26 ~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~----------~~   93 (393)
T PRK09705         26 TSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMR----------EL   93 (393)
T ss_pred             hccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHH----------HH
Confidence            44444454 67789999999999999999999999999999999998 99999999999999887664          55


Q ss_pred             cchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc-CchhHH
Q 043156          123 GSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNK-GWDRGF  201 (578)
Q Consensus       123 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~-g~~~~f  201 (578)
                      .+++..++++|+++|+|.+...+....++.|++| ++      |+++++++..+.++|..+++.+++++.++. +||+.+
T Consensus        94 a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~  166 (393)
T PRK09705         94 YPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTL  166 (393)
T ss_pred             CcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            6788889999999999999999999999999997 54      899999999999999999999999988775 799988


Q ss_pred             HHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccc
Q 043156          202 GLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFR  281 (578)
Q Consensus       202 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (578)
                      .+.++..++..+..+...++    +|++ ++                   ++..                          
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~----~~~~-~~-------------------~~~~--------------------------  196 (393)
T PRK09705        167 AWWALPAVVALFAWWWQSAR----EVAS-SH-------------------KTTT--------------------------  196 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhcC----CCcc-cc-------------------CCCc--------------------------
Confidence            76655544333332222111    1111 00                   0000                          


Q ss_pred             hhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeC
Q 043156          282 FLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIP  361 (578)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (578)
                                           .+.+     ...+++.....+...+....++......+.++.++  +.+.       ..
T Consensus       197 ---------------------~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~--g~s~-------~~  241 (393)
T PRK09705        197 ---------------------TPVR-----VVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEI--GASA-------QY  241 (393)
T ss_pred             ---------------------CCcc-----cccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCh-------hh
Confidence                                 0000     00111111111112222223333333333333221  2111       12


Q ss_pred             CCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCC
Q 043156          362 PASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVV  441 (578)
Q Consensus       362 ~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (578)
                      .+.......+..++..++.+++.||..+|           +.+.+++.+..++.+.+....                   
T Consensus       242 ag~~~~~~~i~~i~g~~~~g~l~~r~~~~-----------~~~~~~~~l~~~~~~~~~~~~-------------------  291 (393)
T PRK09705        242 SGSLLALMTLGQAAGALLMPAMARHQDRR-----------KLLMLALVLQLVGFCGFIWLP-------------------  291 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHHHHHHcc-------------------
Confidence            33455566777888888888887776655           345666666666665443322                   


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccC-CchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCC
Q 043156          442 QPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEA-PKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGW  520 (578)
Q Consensus       442 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~  520 (578)
                         + +...+  ..++.+++.+...|.......+.. |++.+|+..|+.+....++..+++.+.+.+.+.+         
T Consensus       292 ---~-~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~---------  356 (393)
T PRK09705        292 ---L-QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS---------  356 (393)
T ss_pred             ---c-hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence               1 11111  123456666666777766666776 4688999999999999999999999999887422         


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 043156          521 LAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYR  559 (578)
Q Consensus       521 ~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~  559 (578)
                              ++|+..|.+.++++++..++.+.+.++++.+
T Consensus       357 --------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (393)
T PRK09705        357 --------GNYLMDWAFHALCVVGLMIITLRFAPARFPQ  387 (393)
T ss_pred             --------CCchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence                    2355678888888888888877777665443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.92  E-value=2.2e-23  Score=217.49  Aligned_cols=353  Identities=13%  Similarity=0.025  Sum_probs=218.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccch
Q 043156           46 GVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSD  125 (578)
Q Consensus        46 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (578)
                      .......+++++|+|.++.|++.+.+.+++.++.++.|+++||+ |||+++..+......+....          ....+
T Consensus        10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~----------~~~~~   78 (368)
T TIGR00903        10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRL----------LDPFN   78 (368)
T ss_pred             HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHH----------HHhcc
Confidence            34444566889999999999999999999999999999999998 99998765554444322111          22257


Q ss_pred             hHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHH
Q 043156          126 AALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSS  205 (578)
Q Consensus       126 ~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~  205 (578)
                      +..+++.|+++|+|.+.. ++....++|++|+++      |++++++.+.+.++|..+++.+++++.+++|||+.|++.+
T Consensus        79 ~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~  151 (368)
T TIGR00903        79 YEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIA  151 (368)
T ss_pred             HHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence            889999999999999864 445555699999876      9999999999999999999999999999899999999977


Q ss_pred             HHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhH
Q 043156          206 VAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDK  285 (578)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (578)
                      ++.++..+.+++..++.++++++.                      .+ ..   +                     ..  
T Consensus       152 ~l~~~~~~~~~~~lp~~p~~~~~~----------------------~~-~~---~---------------------~~--  182 (368)
T TIGR00903       152 AVAAAGIILVLAALPALPFQAAEG----------------------FG-FK---D---------------------AV--  182 (368)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCC----------------------cc-hH---H---------------------HH--
Confidence            776555444444333211110000                      00 00   0                     00  


Q ss_pred             hhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcc
Q 043156          286 AAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASL  365 (578)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (578)
                      .                 +++    +-.++++.....+..++....++....+.++++.+.  ..+..        .+..
T Consensus       183 ~-----------------~~~----~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~--g~s~~--------~~~~  231 (368)
T TIGR00903       183 K-----------------EFG----ALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPA--GLEDI--------AGDA  231 (368)
T ss_pred             H-----------------HHH----HHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCChH--------HHHH
Confidence            0                 000    001112222222233444445555555555555321  11211        1111


Q ss_pred             cCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCcc
Q 043156          366 PILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLP  445 (578)
Q Consensus       366 ~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (578)
                      ..   +..+........+.|+..||..       +...+....++.++++...+...                       
T Consensus       232 ~~---l~~~~g~~g~~~~~d~~~r~~~-------r~~~~~~~~~~~a~~~~~~~~~~-----------------------  278 (368)
T TIGR00903       232 VA---LAILAGLIGVAVIPDRVARAGL-------RSIYIRAAALLIAAFFLALAFEL-----------------------  278 (368)
T ss_pred             HH---HHHHHHHHHHHHhhHHhhhhhh-------HHHHHHHHHHHHHHHHHHHHHcc-----------------------
Confidence            12   2222222334556666554410       01112223333333333332211                       


Q ss_pred             chhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCC
Q 043156          446 ISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNN  525 (578)
Q Consensus       446 ~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~  525 (578)
                       +....+....+.+++.....+..+++..|.+|++.||+++|+.+...++++.+++.+.+.+..                
T Consensus       279 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~----------------  341 (368)
T TIGR00903       279 -NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS----------------  341 (368)
T ss_pred             -ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc----------------
Confidence             122223333444555555667788899999999999999999999999999999988876541                


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHh
Q 043156          526 INRNHLNLFFWLLSALSFINFSVYL  550 (578)
Q Consensus       526 ~~~~~~~~~f~~~~~~~~i~~i~~~  550 (578)
                          +.+..|.+.++..+++.+..+
T Consensus       342 ----~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       342 ----SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHH
Confidence                234568888888888777764

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=5.3e-23  Score=218.10  Aligned_cols=358  Identities=14%  Similarity=0.082  Sum_probs=228.4

Q ss_pred             CchhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhh
Q 043156           24 GIKTSLLILAAFGFENLAT---IALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISG  100 (578)
Q Consensus        24 ~~r~~~~l~~~~~~~~~~~---~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~  100 (578)
                      +.+..+..+...+++...+   ..+.+.++ .+.+++|.|..+.++..+.+.++..++.++.|+++||+ ||||++.++.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~   85 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGV   85 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHH
Confidence            4455555555444444433   33334444 35689999999999999999999999999999999998 9999999998


Q ss_pred             hhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHH
Q 043156          101 SVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIG  180 (578)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG  180 (578)
                      ++..++.++.          ...++.+.+++.|++.|++.+...+...+++.|.+|+++      |.+..++.+....+|
T Consensus        86 ~~~~~~~~~~----------~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~  149 (406)
T PRK15402         86 AFFILTCLAI----------LLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLA  149 (406)
T ss_pred             HHHHHHHHHH----------HHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHH
Confidence            8777554443          334677788899999999999888888899999999876      889999988888899


Q ss_pred             HHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhh
Q 043156          181 GAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYE  260 (578)
Q Consensus       181 ~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (578)
                      ..++|.+++++.++.+|++.|++.+++.++..+..+...++.+.+++++ .+                      ..    
T Consensus       150 ~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------------~~----  202 (406)
T PRK15402        150 PLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK-LS----------------------LK----  202 (406)
T ss_pred             HHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc-cc----------------------HH----
Confidence            9999999999988889999999888776665554433322211000000 00                      00    


Q ss_pred             hchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccc
Q 043156          261 INMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQ  340 (578)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  340 (578)
                                          +..+.                   ++    +...++ +.................+....
T Consensus       203 --------------------~~~~~-------------------~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  238 (406)
T PRK15402        203 --------------------ELGRD-------------------YK----LVLKNR-RFVAGALALGLVSLPLLAWIALS  238 (406)
T ss_pred             --------------------HHHHH-------------------HH----HHHcCc-HHHHHHHHHHHHHHHHHHHHHHh
Confidence                                00000                   00    000111 11111111111111011111111


Q ss_pred             hhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHH
Q 043156          341 TFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAI  420 (578)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~  420 (578)
                      +.+..+..+.+.       ...+.......+..++..++.+++.||..+|           +.+.++.++..++++....
T Consensus       239 p~~~~~~~g~~~-------~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~-----------~~~~~~~~~~~~g~~~~~~  300 (406)
T PRK15402        239 PVILISGEQLSS-------YEYGLLQVPVFGALIAGNLTLARLTSRRPLR-----------SLIRMGLWPMVAGLLLAAL  300 (406)
T ss_pred             HHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHHH
Confidence            222221111111       1111222223345666677788887776655           4566677777777766655


Q ss_pred             HHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHH
Q 043156          421 FEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFS  500 (578)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg  500 (578)
                      ....                   ...+.++++...++.+++.+...+..+.... ..+++.||++.+..++.+.++..+|
T Consensus       301 ~~~~-------------------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g  360 (406)
T PRK15402        301 ATVI-------------------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVG  360 (406)
T ss_pred             HHHc-------------------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHH
Confidence            3310                   1224566777788899999888777666554 4455899999999999999999999


Q ss_pred             HHHHHhhh
Q 043156          501 TILVNIVN  508 (578)
Q Consensus       501 ~~~~~~~~  508 (578)
                      +.+.+.+.
T Consensus       361 ~~~~~~l~  368 (406)
T PRK15402        361 IELSKHAY  368 (406)
T ss_pred             HHHHHhcc
Confidence            99988765

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=1.7e-23  Score=217.27  Aligned_cols=358  Identities=12%  Similarity=0.040  Sum_probs=235.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcc
Q 043156           30 LILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPC  109 (578)
Q Consensus        30 ~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~  109 (578)
                      .++...++..++.......++.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.++
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence            3456667777776666677777664 6899999999999999999999999999999998 9999999988776644333


Q ss_pred             cccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043156          110 NVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIV  189 (578)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~  189 (578)
                      ..+     .......+.+.+++.|++.|++.+...|+..+++.|++|+++      |++.+++.+...++|..++|.+++
T Consensus        81 ~~~-----~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~  149 (365)
T TIGR00900        81 LPF-----VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGG  149 (365)
T ss_pred             HHH-----HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHH
Confidence            200     000111378889999999999999999999999999999876      999999999999999999999999


Q ss_pred             HhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhh
Q 043156          190 WIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAI  269 (578)
Q Consensus       190 ~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (578)
                      ++.+..||++.|++.++..+++.+..+....+.+++++++  +.                    ++.  ...        
T Consensus       150 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------------------~~~--~~~--------  197 (365)
T TIGR00900       150 LMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQ--AL--------------------SNA--VLR--------  197 (365)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcccc--cc--------------------chh--HHH--------
Confidence            9998899999999887766555444433322111000000  00                    000  000        


Q ss_pred             hcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHH-HHHHHHHHHhhhccchhhhhhhc
Q 043156          270 ETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPI-FCCTIVMTLCLAQLQTFSIQQGL  348 (578)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  348 (578)
                                    +..                ..++     .....+.+...... +.....+........+.+..+..
T Consensus       198 --------------~~~----------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (365)
T TIGR00900       198 --------------DTR----------------EGIK-----FVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYL  242 (365)
T ss_pred             --------------HHH----------------hHHH-----HHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence                          000                0000     00001111111111 11111111111122233322211


Q ss_pred             cCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhh
Q 043156          349 TMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDV  428 (578)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~  428 (578)
                      +.+.       ...+.+.....+..++..++.+++.++..+|           +.+..+.++.+++++...+..      
T Consensus       243 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~------  298 (365)
T TIGR00900       243 GRGS-------THYGWVLAAFGLGALLGALLLGLLGRYFKRM-----------ALMTGAIFVIGLAILVVGLTP------  298 (365)
T ss_pred             CCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----------HHHHHHHHHHHHHHHHHHhhc------
Confidence            1111       1123344455666777777777776555444           345556666666665555432      


Q ss_pred             hhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043156          429 ARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVN  508 (578)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~  508 (578)
                                      + +.+.+.+..++.+++.+...+...++..+.+|++.||++.|+.+....++..+++.+.+.+.
T Consensus       299 ----------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       299 ----------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             ----------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            1 25556667788899999999999999999999999999999999999999999999988775

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.92  E-value=1.6e-23  Score=226.20  Aligned_cols=379  Identities=14%  Similarity=0.073  Sum_probs=230.5

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHH
Q 043156           56 VLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYL  135 (578)
Q Consensus        56 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  135 (578)
                      ++|++..+.|++.+.+.+++.++.+++|+++||+ |||+++.++.+++.++.++.        ......+...+++.|++
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~r~~  140 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVI--------PWAAGGGIALVVFCRVI  140 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHH--------HHHHHcCchHHHHHHHH
Confidence            7899999999999999999999999999999998 99999999988877554442        11222446678899999


Q ss_pred             HHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc-CchhHHHHHHHHHHHHHHH
Q 043156          136 IATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNK-GWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       136 ~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~-g~~~~f~i~~~~~~~~~~~  214 (578)
                      +|++.+...|....+++|++|+++      |++++++.+.+.++|..++|.+++++.+.+ |||+.|++.++..++..+.
T Consensus       141 ~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~  214 (465)
T TIGR00894       141 QGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLL  214 (465)
T ss_pred             HHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHH
Confidence            999999999999999999999887      999999999999999999999999998884 9999999988876665555


Q ss_pred             HHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCcc
Q 043156          215 FAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTE  294 (578)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (578)
                      ++...++.+++++.. +..                     +++..+     +      .....+.             . 
T Consensus       215 ~~~~~~~~p~~~~~~-~~~---------------------~~~~i~-----~------~~~~~~~-------------~-  247 (465)
T TIGR00894       215 WFVFPADDPSIHPCI-SKF---------------------EKKYIN-----S------SLQGQKG-------------S-  247 (465)
T ss_pred             HHHHhcCCcccCCCC-CHH---------------------HHHHHH-----h------hcccccC-------------C-
Confidence            444333222111110 000                     000000     0      0000000             0 


Q ss_pred             ccccccCCCCCccccchhhhhHHHHHh-HHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHH
Q 043156          295 NLEITEAPNPWKLCRVTQVENAKIILG-MIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFM  373 (578)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  373 (578)
                          .....+|+     .....+.+.. .+..++....++....+.+.++ .+..+.+.       ...+.+.....+..
T Consensus       248 ----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l-~~~~g~s~-------~~~g~~~~~~~~~~  310 (465)
T TIGR00894       248 ----TRQSLPIK-----AIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFI-SWVLRVSG-------KENGLLSSLPYLFA  310 (465)
T ss_pred             ----CCCCCCHH-----HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCcCh-------HHhHHHHHHHHHHH
Confidence                00001221     0111111111 1111222222222223333333 22222221       12344555667778


Q ss_pred             HHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHH
Q 043156          374 ILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSI  453 (578)
Q Consensus       374 il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  453 (578)
                      ++..++.+++.|++.+|.....   ....++..+..+...+...+....                     ...+.+..+.
T Consensus       311 ~i~~~~~g~l~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~  366 (465)
T TIGR00894       311 WLCSIFAGYLADFLKSSKTLSL---TAARKIFNGIGGLGPGIFAYALPY---------------------LSAAFYLTII  366 (465)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHHHHHHHHHHHHH---------------------cCCchHHHHH
Confidence            8888999999988776531110   001112222211111111111111                     0112233333


Q ss_pred             HHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHH
Q 043156          454 QFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNL  533 (578)
Q Consensus       454 ~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (578)
                      .+.+.+.+.+...+..+....+.+|+ .+|..+|+.++...+++.+++.+.+.+.+..               ..+.|..
T Consensus       367 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~---------------~~~~~~~  430 (465)
T TIGR00894       367 ILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQD---------------SKNVWLI  430 (465)
T ss_pred             HHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCC---------------CchHHHH
Confidence            34444444444555555666677776 8999999999999999999999888665211               1134778


Q ss_pred             HHHHHHHHHHHHHHHHhhhc
Q 043156          534 FFWLLSALSFINFSVYLFMS  553 (578)
Q Consensus       534 ~f~~~~~~~~i~~i~~~~~~  553 (578)
                      .|.+.+++.+++.+++.++.
T Consensus       431 ~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       431 VFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             HHHHHHHHHHHHHHHeeeee
Confidence            89999989998888776643

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.92  E-value=2.2e-23  Score=225.96  Aligned_cols=401  Identities=15%  Similarity=0.113  Sum_probs=248.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      ....+++..++..+........+ .++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAI-PTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            34555566666666655554444 466789999999999999999999999999999999998 9999999999988877


Q ss_pred             CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVT  186 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~  186 (578)
                      .++.          ...++...+++.|+++|++.+...|...+++.|.+|+++      |++++++++....+|..++|.
T Consensus        81 ~~~~----------~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~  144 (485)
T TIGR00711        81 SLLC----------GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPT  144 (485)
T ss_pred             HHHH----------hCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhc
Confidence            6554          445788889999999999999999999999999999876      999999999999999999999


Q ss_pred             HHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHH---H--HHHHHHHhcccCCCCCchhhhhh
Q 043156          187 LIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEII---Q--VYVAAIRNRKLELPEDPMELYEI  261 (578)
Q Consensus       187 l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~  261 (578)
                      +++++.++++||+.|++.+...++..+...+..++.++++.++.+......   .  .+.....+.......++......
T Consensus       145 ~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (485)
T TIGR00711       145 LGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILIL  224 (485)
T ss_pred             cHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHH
Confidence            999999999999999998877665555444443322111111101110000   0  00000000000000000000000


Q ss_pred             chhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccch
Q 043156          262 NMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQT  341 (578)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~  341 (578)
                       ......         ....+... +.+           ...|...  .+..++++.....+..+.....++..... .+
T Consensus       225 -~~~~~~---------~~~~~~~~-~~~-----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p  279 (485)
T TIGR00711       225 -SITGLV---------AIIAFVVW-ELT-----------DDNPLVD--LRLFKYRNFTIGCVYMSLLGLGLYGSFYL-LP  279 (485)
T ss_pred             -HHHHHH---------HHHHHHHH-HHc-----------CCCCccC--HHHHcCCChHHHHHHHHHHHHHHHHHHHH-HH
Confidence             000000         00000000 000           0011100  00011111111111111111111211111 12


Q ss_pred             hhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHH
Q 043156          342 FSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIF  421 (578)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~  421 (578)
                      .+.++..+.+.       ...+.+.....+..++..++.+++.||.++|           +.+.+|..+.+++..++.+.
T Consensus       280 ~~~~~~~g~s~-------~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~g~~~~~~~~~~~~~~  341 (485)
T TIGR00711       280 LYLQQVLGYTA-------LQAGLHILPVGLAPMLSSPIAGRMGDKIDPR-----------KLVTIGLILYAVGFYWRAFT  341 (485)
T ss_pred             HHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-----------HHHHHHHHHHHHHHHHHhcc
Confidence            22222111111       1223455556677888899999998877766           45666777777777665521


Q ss_pred             HHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHH
Q 043156          422 EVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFST  501 (578)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~  501 (578)
                      .                    ..+.+.+......++.|++.+...++......+..|++++|++.|+.++.+.+|+.+|+
T Consensus       342 ~--------------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~  401 (485)
T TIGR00711       342 F--------------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGT  401 (485)
T ss_pred             C--------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence            1                    11234555666678889999988888888888999999999999999999999999999


Q ss_pred             HHHHhhh
Q 043156          502 ILVNIVN  508 (578)
Q Consensus       502 ~~~~~~~  508 (578)
                      .+.+.+.
T Consensus       402 ~i~g~~~  408 (485)
T TIGR00711       402 ALITTIL  408 (485)
T ss_pred             HHHHHHH
Confidence            9888765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.92  E-value=2.5e-23  Score=217.65  Aligned_cols=368  Identities=12%  Similarity=0.065  Sum_probs=233.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhh-hhhhccCCccc
Q 043156           32 LAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLIS-GSVEFLPPPCN  110 (578)
Q Consensus        32 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~-~~~~~~~~~~~  110 (578)
                      ++..++..++.....+.++.|+++++|.|..+.|++.+.+.+...+..++.|+++||+ ||||.+++. .+...++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            4567778888888889999999999999999999999999999999999999999998 999876654 44433332222


Q ss_pred             ccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhH--HHHHHHHHHHHHHHHHHHH
Q 043156          111 VFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSF--FNLLFLAVCIGGAISVTLI  188 (578)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~--~~~~~~~~~lG~~~~p~l~  188 (578)
                                ..+++++.+++.|++++.+.+...|...++..|..|+++      |.+.  .+..+...++|..++|.++
T Consensus        82 ----------~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~ig~~~~  145 (375)
T TIGR00899        82 ----------AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISLAWVIGPPLA  145 (375)
T ss_pred             ----------HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhHHHHHhhhHH
Confidence                      334677778888888887777777877788888877654      5544  5778888899999999999


Q ss_pred             HHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhh
Q 043156          189 VWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAA  268 (578)
Q Consensus       189 ~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (578)
                      +++.+.++||+.|++.+++.++..+..++..++.+++++++ +                       .             
T Consensus       146 ~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------~-------------  188 (375)
T TIGR00899       146 FWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA-L-----------------------T-------------  188 (375)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc-c-----------------------C-------------
Confidence            99998899999999988876655554444333221111000 0                       0             


Q ss_pred             hhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhc
Q 043156          269 IETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGL  348 (578)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (578)
                                ..+.   .                ..++      .++.+...  ...+............. +.+..+..
T Consensus       189 ----------~~~~---~----------------~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~  230 (375)
T TIGR00899       189 ----------RLEV---R----------------GLLA------SRDTRLLF--VACTLMWGCNILYIINM-PLLIIHEL  230 (375)
T ss_pred             ----------cchh---h----------------hhhc------CcchHHHH--HHHHHHHHHHHHHHhhh-HHHHHHHc
Confidence                      0000   0                0000      00011111  01111111111111112 22222211


Q ss_pred             cCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhh
Q 043156          349 TMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDV  428 (578)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~  428 (578)
                      +.+..       ..+.+........+...++.+++.||+.+|           +.+.++.++..+.++......      
T Consensus       231 g~~~~-------~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~~------  286 (375)
T TIGR00899       231 GLPDK-------LAGLMMGTAAGLEIPFMLLAGYLIKRFGKR-----------RLMLLAALAGVAFYTGLAADN------  286 (375)
T ss_pred             CCCHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----------hHHHHHHHHHHHHHHHHHHHH------
Confidence            11111       112222333344455567778888777666           234445444444433333221      


Q ss_pred             hhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043156          429 ARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVN  508 (578)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~  508 (578)
                                        +.+.+....++.+++.+...+..+.+..+..|++ +++++++.+...++|..+++.+.+.+.
T Consensus       287 ------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~  347 (375)
T TIGR00899       287 ------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILA  347 (375)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              3344455566778877777888888888888875 579999999999999999999998776


Q ss_pred             ccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 043156          509 SATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFM  552 (578)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  552 (578)
                      +.                  .+++..|+..+++++++.++..++
T Consensus       348 ~~------------------~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       348 ER------------------WSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             Hh------------------ccchhHHHHHHHHHHHHHHHHhee
Confidence            21                  235577888888888887776553

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.92  E-value=7.4e-24  Score=220.93  Aligned_cols=357  Identities=12%  Similarity=0.047  Sum_probs=230.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCcccc
Q 043156           42 TIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKI  121 (578)
Q Consensus        42 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (578)
                      .|. .+.+.+++.+++|+|.++.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.          .
T Consensus        19 ~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~----------~   86 (377)
T TIGR00890        19 VYT-WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFY----------A   86 (377)
T ss_pred             Hhh-hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHH----------H
Confidence            443 34456788899999999999999999999999999999999998 99999999998888665553          4


Q ss_pred             ccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHH
Q 043156          122 EGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGF  201 (578)
Q Consensus       122 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f  201 (578)
                      ..++...+++.|.+.|++.+...+.....+.|++|+ +      |+++.++...+.++|..+++.+.+.+.+..+||+.|
T Consensus        87 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f  159 (377)
T TIGR00890        87 IADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAF  159 (377)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHH
Confidence            557888899999999999998888878888888874 3      899999999999999888777777777778999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccc
Q 043156          202 GLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFR  281 (578)
Q Consensus       202 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (578)
                      ++.++..++..+..++..++.+++++++                     ..+..    +                 .+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~----~-----------------~~~~  197 (377)
T TIGR00890       160 IYMGIIFLLVIVLGAFLIGYPPGQLIKT---------------------NIEVS----V-----------------KDYT  197 (377)
T ss_pred             HHHHHHHHHHHHHHHHheecCchhcccc---------------------Ccccc----h-----------------hhhh
Confidence            9988776655544433322111100000                     00000    0                 0000


Q ss_pred             hhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeC
Q 043156          282 FLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIP  361 (578)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (578)
                      .   .                        +..++++........++....... .......+.+     +....   ...
T Consensus       198 ~---~------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~---~~~  241 (377)
T TIGR00890       198 V---W------------------------EMLRTPQFWVLYLSFFLNAVSGLL-LIGLYKPYGQ-----SLGLS---DGF  241 (377)
T ss_pred             H---H------------------------HHHcCccHHHHHHHHHHHhHHHHH-HHHHHHHHHH-----HcCCC---HHH
Confidence            0   0                        000011111111111111111100 1111111111     11111   111


Q ss_pred             CCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCC
Q 043156          362 PASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVV  441 (578)
Q Consensus       362 ~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (578)
                      .+.+.....+..++..++.+++.||+.||           +.+.++.++..++++.+....                   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~-------------------  291 (377)
T TIGR00890       242 LVLAVSISSIFNGGGRPFLGALSDKIGRQ-----------KTMSIVFGISAVGMAAMLFIP-------------------  291 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhhhHHHHHHHHHHHHHHHcc-------------------
Confidence            22344556677788888899999887776           345566667766665554422                   


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCc
Q 043156          442 QPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWL  521 (578)
Q Consensus       442 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~  521 (578)
                         ..+.+.+....++.+++.+...+....+..+..|++.||++.|+.+....+|+.+++.+.+.+.+            
T Consensus       292 ---~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------------  356 (377)
T TIGR00890       292 ---MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT------------  356 (377)
T ss_pred             ---cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh------------
Confidence               11222232334455666665566667788899999999999999999999999999999987762            


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHH
Q 043156          522 AGNNINRNHLNLFFWLLSALSFINF  546 (578)
Q Consensus       522 ~~~~~~~~~~~~~f~~~~~~~~i~~  546 (578)
                            ..+|+..|++.++++++++
T Consensus       357 ------~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       357 ------EIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             ------hhchhhHHHHHHHHHHHhc
Confidence                  1235567887777777654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.92  E-value=1.3e-22  Score=220.47  Aligned_cols=168  Identities=13%  Similarity=0.050  Sum_probs=129.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHH-----HHHHHHHHHHHHHhHHHHHhhhccchhhhhhh
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAE-AAN-----QVTNYMGTSYILSIVVALLADAFIGRFKAVLI   98 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-~~~-----~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~   98 (578)
                      +|..+...+..+++.+.+.. ..+...++.++++.+.++ ..+     +.+...++..++.++.|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            45566667788888887665 455666888888644322 122     24666788999999999999998 99999999


Q ss_pred             hhhhhccCCcccccCCCCCccccccchhH--------HHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHH
Q 043156           99 SGSVEFLPPPCNVFDPTAGCKKIEGSDAA--------LLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFF  170 (578)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~  170 (578)
                      +.++++++.++.          +..+++.        ++++.|+++|+|.|...+...++++|++|+++      |++..
T Consensus        93 ~~~l~~i~~~~~----------a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~  156 (490)
T PRK10642         93 TIVIMSISTFCI----------GLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMG  156 (490)
T ss_pred             HHHHHHHHHHHH----------HhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHH
Confidence            999999776664          3344443        48899999999999999999999999999987      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc--------cccCchhHHHHHHHHHHH
Q 043156          171 NLLFLAVCIGGAISVTLIVWIQ--------DNKGWDRGFGLSSVAVFL  210 (578)
Q Consensus       171 ~~~~~~~~lG~~~~p~l~~~l~--------~~~g~~~~f~i~~~~~~~  210 (578)
                      ++...+.++|..+|+.+...+.        .++|||++|++.++..++
T Consensus       157 ~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        157 SWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence            9998888888888876654442        257999999997655443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.92  E-value=4.9e-23  Score=216.58  Aligned_cols=174  Identities=9%  Similarity=0.041  Sum_probs=150.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      +|.++.+.+..+......+...+.++ .+++++|++.++.+++.+.+.++..++.++.|+++||+ ||||++.++.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   79 (382)
T PRK10091          2 KKVILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCV   79 (382)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHH
Confidence            45677788888888888777777775 45789999999999999999999999999999999998 99999999999988


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      ++.++.          ...++.+.+++.|++.|++.+...+....++.|++|+++      |++.++++..+..+|..++
T Consensus        80 ~~~~l~----------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g  143 (382)
T PRK10091         80 IGNAMF----------TLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLG  143 (382)
T ss_pred             HHHHHH----------HHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHh
Confidence            776554          456788999999999999999888888888999998775      8999999999999999999


Q ss_pred             HHHHHHhccccCchhHHHHHHHHHHHHHHHHH
Q 043156          185 VTLIVWIQDNKGWDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       185 p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  216 (578)
                      |.+++++.+..+||+.|++.++..++..+..+
T Consensus       144 ~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  175 (382)
T PRK10091        144 IPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY  175 (382)
T ss_pred             ccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888999999998877655544433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.92  E-value=2.9e-23  Score=223.27  Aligned_cols=176  Identities=11%  Similarity=0.020  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           28 SLLILAAFGFENLATIAL---GVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~---~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      -|.++...++....+|..   ..+...|+.++ |+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~  104 (452)
T PRK11273         27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  104 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHH
Confidence            344444444445555543   23444577777 99999999999999999999999999999998 99999999988877


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH-H
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA-I  183 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~-~  183 (578)
                      ++.++..      .......+...+++.|++.|++.+...|.....+.|++|+++      |++++++++.+.++|+. .
T Consensus       105 i~~~~~~------~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~  172 (452)
T PRK11273        105 AVMLFMG------FVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLP  172 (452)
T ss_pred             HHHHHHH------hhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHH
Confidence            5544420      000112356678889999999999988888888999999876      99999999999999874 5


Q ss_pred             HHHHHHHhccccCchhHHHHHHHHHHHHHHHHHh
Q 043156          184 SVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       184 ~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      +|.++..+....+||+.|++.+++.++..+..++
T Consensus       173 ~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~  206 (452)
T PRK11273        173 PLLFLLGMAWFNDWHAALYMPAFAAILVALFAFA  206 (452)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            5554433433458999999987765554443333

>PRK09952 shikimate transporter; Provisional

Probab=99.91  E-value=2.1e-22  Score=215.65  Aligned_cols=389  Identities=13%  Similarity=0.084  Sum_probs=230.3

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHH-----HHHHHHHHHHhHHHHHhhhccchhhh
Q 043156           23 GGIKTSLLILAAFGFENLATIALGVNLVTYFNGVL--HLDLAEAANQVT-----NYMGTSYILSIVVALLADAFIGRFKA   95 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~l--g~s~~~~~~~~~-----~~~~~~~~~~~~~G~laD~~~Grr~~   95 (578)
                      .++|..+...+..+++.+.........+.++.+++  +.++. .+++.+     ...++..++.++.|+++||+ |||++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~   96 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHH
Confidence            34566777777888888877765555555666665  67766 455432     23445667778889999998 99999


Q ss_pred             hhhhhhhhccCCcccccCCCCCccccccchhH--------HHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhh
Q 043156           96 VLISGSVEFLPPPCNVFDPTAGCKKIEGSDAA--------LLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMS  167 (578)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~  167 (578)
                      +.++.++++++.++.          ...++..        .+++.|+++|++.|...|....++.|++|+++      |+
T Consensus        97 l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg  160 (438)
T PRK09952         97 LMLTVWMMGIATALI----------GLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KA  160 (438)
T ss_pred             HHHHHHHHHHHHHHH----------hcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------Cc
Confidence            999999988776554          2334433        58889999999999999999999999999987      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc--------cccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHH
Q 043156          168 SFFNLLFLAVCIGGAISVTLIVWIQ--------DNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQV  239 (578)
Q Consensus       168 ~~~~~~~~~~~lG~~~~p~l~~~l~--------~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (578)
                      +..+..+.+..+|..+++.+..++.        .++|||++|++.++..++..   +. ++.    .|+  +        
T Consensus       161 ~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~---~l-~~~----~~e--s--------  222 (438)
T PRK09952        161 FYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL---WV-RNG----MEE--S--------  222 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH---HH-HHh----CCC--C--------
Confidence            9999999999999988877776654        25799999998776543322   11 111    111  1        


Q ss_pred             HHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHH
Q 043156          240 YVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKII  319 (578)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  319 (578)
                                     +++.....+.++.         .+.                       .++.   +...++++..
T Consensus       223 ---------------~~~~~~~~~~~~~---------~~~-----------------------~~~~---~~l~~~~~~~  252 (438)
T PRK09952        223 ---------------AEFEQQQHEQAAA---------KKR-----------------------IPVI---EALLRHPGAF  252 (438)
T ss_pred             ---------------hhHHHHHhhcccc---------ccc-----------------------CCHH---HHHHHchHHH
Confidence                           1000000000000         000                       0000   0001111221


Q ss_pred             HhHHHH-HHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCC
Q 043156          320 LGMIPI-FCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGI  398 (578)
Q Consensus       320 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~  398 (578)
                      ...... ++....++......+++. .+..+++...       .........+..++..++.+++.||++||        
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~g~s~~~-------~~~~~~~~g~~~~i~~~~~g~l~Dr~grr--------  316 (438)
T PRK09952        253 LKIIALRLCELLTMYIVTAFALNYS-TQNLGLPREL-------FLNIGLLVGGLSCLTIPCFAWLADRFGRR--------  316 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhCch--------
Confidence            111111 112222333222222222 2211111110       00112223445566777889999888877        


Q ss_pred             CchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCC
Q 043156          399 THLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAP  478 (578)
Q Consensus       399 ~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P  478 (578)
                         +.+..+.++..++.+.......                    ...+.+.++...++.+++.+...+..+.+..|.+|
T Consensus       317 ---~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p  373 (438)
T PRK09952        317 ---RVYITGALIGTLSAFPFFMALE--------------------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFG  373 (438)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence               3344555544444332222110                    01122333344555677777777888889999999


Q ss_pred             chhhHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 043156          479 KGIKSLSTCFLW-CSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFM  552 (578)
Q Consensus       479 ~~~rg~~~g~~~-~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  552 (578)
                      ++.|+++.|+.+ ..+.+++.++|.+.+.+.+.+                .++|...+...+++.+++.+..+.+
T Consensus       374 ~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~----------------~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        374 ASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF----------------GGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc----------------CCCchHHHHHHHHHHHHHHHHHHHc
Confidence            999999999954 445689999999988776322                0124456777777777777776654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.91  E-value=8.9e-23  Score=215.37  Aligned_cols=175  Identities=14%  Similarity=0.177  Sum_probs=149.2

Q ss_pred             cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhh
Q 043156           20 YKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLIS   99 (578)
Q Consensus        20 ~~~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~   99 (578)
                      ..+.+++......+..+...+..+.+....+ .+++++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~   83 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS   83 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence            3456778888888888888888776655554 66889999999999999999999999999999999998 999999999


Q ss_pred             hhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH
Q 043156          100 GSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI  179 (578)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l  179 (578)
                      .++..++.++.          ....++..+++.|++.|++.+...+...+++.|++|+++      |++++++.+.+.++
T Consensus        84 ~~~~~~~~~~~----------~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~  147 (405)
T TIGR00891        84 IVLFSAGTLAC----------GFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAV  147 (405)
T ss_pred             HHHHHHHHHHH----------HHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHH
Confidence            88877665443          334678889999999999999999999999999999887      99999999999999


Q ss_pred             HHHHHHHHHHHhccccC--chhHHHHHHHHHHHHH
Q 043156          180 GGAISVTLIVWIQDNKG--WDRGFGLSSVAVFLAT  212 (578)
Q Consensus       180 G~~~~p~l~~~l~~~~g--~~~~f~i~~~~~~~~~  212 (578)
                      |..+++.+++.+.+..+  ||+.|++.++..++..
T Consensus       148 g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       148 GAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            99999999998887665  9999988665544443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.91  E-value=8.4e-23  Score=210.49  Aligned_cols=348  Identities=19%  Similarity=0.208  Sum_probs=261.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCc
Q 043156           29 LLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPP  108 (578)
Q Consensus        29 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~  108 (578)
                      +.+....+...+..+...+..+.|. +++|.+..+.+++.+...++..++.++.|+++||+ ||||.+.++.++..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence            3455677778888887777777765 56799999999999999999999999999999998 999999999988886655


Q ss_pred             ccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043156          109 CNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLI  188 (578)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~  188 (578)
                      +.          ....+...+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++|.++
T Consensus        80 ~~----------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~  143 (352)
T cd06174          80 LL----------AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLG  143 (352)
T ss_pred             HH----------HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHH
Confidence            43          333678889999999999999999999999999999977      99999999999999999999999


Q ss_pred             HHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhh
Q 043156          189 VWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAA  268 (578)
Q Consensus       189 ~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (578)
                      +++.+..+|++.|++.++..++..+...+..                                                 
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------  174 (352)
T cd06174         144 GLLAESLGWRWLFLILAILGLLLALLLLFLL-------------------------------------------------  174 (352)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence            9999888999999998877666554433211                                                 


Q ss_pred             hhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhc
Q 043156          269 IETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGL  348 (578)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (578)
                                                                      |+.................+....+.+..+..
T Consensus       175 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (352)
T cd06174         175 ------------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVL  206 (352)
T ss_pred             ------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence                                                            00000111111111111111111122222111


Q ss_pred             cCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchh-hHhHhHHHHHHHHHHHHHHHHHHHh
Q 043156          349 TMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQ-RVGVGLVLSCISMAIAAIFEVIRKD  427 (578)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~-~~~iG~~~~~~~~~~~~~~~~~~~~  427 (578)
                      +.+       ....+.+.....+..++..++.+++.||.++|           + .+..+.++..++.+......     
T Consensus       207 ~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~-----  263 (352)
T cd06174         207 GLS-------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-----------RLLLLIGLLLAALGLLLLALAP-----  263 (352)
T ss_pred             CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHhc-----
Confidence            111       11233455666788888888888888877766           3 56677888877777666533     


Q ss_pred             hhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043156          428 VARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIV  507 (578)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~  507 (578)
                                         +.+......++.+++.+...+...++..+..|++.|++.+|+.+...++++.+++.+.+.+
T Consensus       264 -------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l  324 (352)
T cd06174         264 -------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL  324 (352)
T ss_pred             -------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               3566777888999999999999999999999999999999999999999999999999887


Q ss_pred             hccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 043156          508 NSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLF  551 (578)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  551 (578)
                      .+                  ..+++..|++.+++.+++.+.+++
T Consensus       325 ~~------------------~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         325 LD------------------TGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             hc------------------ccCcchHHHHHHHHHHHHHHHhee
Confidence            62                  123456788888888888776654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.91  E-value=4.1e-23  Score=219.32  Aligned_cols=373  Identities=18%  Similarity=0.212  Sum_probs=256.3

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHH
Q 043156           55 GVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALY  134 (578)
Q Consensus        55 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (578)
                      .++++|.++.+++.+.+..++.++.+++|+++||+ |-|+++.++.++.++++++.        +.+...+...+++.|+
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~--------P~aa~~~~~~~~~~R~  136 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLT--------PLAASIGFYLLLVLRF  136 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHH--------HHHHHhcchhhHHHHH
Confidence            36889999999999999999999999999999998 99999999999999777664        2233345557799999


Q ss_pred             HHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-cCchhHHHHHHHHHHHHHH
Q 043156          135 LIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDN-KGWDRGFGLSSVAVFLATI  213 (578)
Q Consensus       135 l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~-~g~~~~f~i~~~~~~~~~~  213 (578)
                      ++|++.|...|+...+.+.+.|++|      |++..++.+.+..+|.+++-.++|++.+. .||+++|++.+++.++..+
T Consensus       137 lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~  210 (466)
T KOG2532|consen  137 LQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFI  210 (466)
T ss_pred             HhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence            9999999999999999999999998      99999999999999999999999999988 9999999999999888777


Q ss_pred             HHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCc
Q 043156          214 IFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTST  293 (578)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (578)
                      ++++...+.+.++|.-                      .+++.+..+.+                        +......
T Consensus       211 ~w~~~~~d~P~~h~~i----------------------s~~El~~I~~~------------------------k~~~~~~  244 (466)
T KOG2532|consen  211 LWFLFYSDSPSKHPNI----------------------SEKELKYIEKG------------------------KSEAHVK  244 (466)
T ss_pred             HHHHHhcCCcccCCCC----------------------CHHHHHHHHhc------------------------ccccccC
Confidence            7666554433332221                      11111111111                        0000000


Q ss_pred             cccccccCCCCCccccchhhhhHHHHHhHHHH-------HHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCccc
Q 043156          294 ENLEITEAPNPWKLCRVTQVENAKIILGMIPI-------FCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLP  366 (578)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (578)
                           .....||+           ++++..++       ++-...++.+..+.+++ +.+..+.+.       -..+.+.
T Consensus       245 -----~~~~vP~~-----------~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY-~~~VL~f~v-------~~~G~~s  300 (466)
T KOG2532|consen  245 -----KKPPVPYK-----------AILTSPPVWAIWISAFGGNWGFYLLLTYLPTY-LKEVLGFDV-------RETGFLS  300 (466)
T ss_pred             -----CCCCCCHH-----------HHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHhCCCh-------hhhhHHH
Confidence                 00124654           22222222       22233333333333333 333333332       2466788


Q ss_pred             CchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhH--hHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCc
Q 043156          367 ILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRV--GVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPL  444 (578)
Q Consensus       367 ~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~--~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (578)
                      +++.+...+...+.+.+.|++.+| .   ...+..+|+  .++....+++++.+++...                  .+.
T Consensus       301 alP~l~~~~~k~~~g~lsD~l~~~-~---ls~t~~rkifn~i~~~~~ai~l~~l~~~~~------------------~~~  358 (466)
T KOG2532|consen  301 ALPFLAMAIVKFVAGQLSDRLTFR-I---LSETTVRKIFNTIAFGGPAVFLLVLAFTSD------------------EHR  358 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-c---CchHhHHHHHHhHHHHHHHHHHHeeeecCC------------------Ccc
Confidence            888899999999999999998886 2   122333344  5567777777776666430                  011


Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCC
Q 043156          445 PISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGN  524 (578)
Q Consensus       445 ~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~  524 (578)
                      ......+.+...+.|+..+.....     ....-+++.+..+|+.+....++++++|++++.+.+              +
T Consensus       359 ~~a~~~l~~~~~~~g~~~~Gf~~~-----~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~--------------~  419 (466)
T KOG2532|consen  359 LLAVILLTIAIGLSGFNISGFYKN-----HQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT--------------D  419 (466)
T ss_pred             hHHHHHHHHHHHHcccchhhhHhh-----hhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC--------------C
Confidence            123333333333334433333322     233135779999999999999999999999998763              1


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 043156          525 NINRNHLNLFFWLLSALSFINFSVYLFMSS  554 (578)
Q Consensus       525 ~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  554 (578)
                      + +...|+.+|++.+++.+++.++|.++.+
T Consensus       420 ~-t~~eW~~VF~i~a~i~~~~~i~f~~f~s  448 (466)
T KOG2532|consen  420 N-TREEWRIVFLIAAGILIVGNIIFLFFGS  448 (466)
T ss_pred             C-CHHHHHHHHHHHHHHHHHhchheeEeec
Confidence            1 3467889999999999999999988864

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.91  E-value=5.5e-24  Score=220.06  Aligned_cols=350  Identities=18%  Similarity=0.217  Sum_probs=229.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccc
Q 043156           32 LAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNV  111 (578)
Q Consensus        32 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~  111 (578)
                      ++..++..+......+.++.++.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++.++.++.+++.++. 
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~-   79 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLL-   79 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHh-
Confidence            4556666777776677777688999999999999999999999999999999999998 99999999999988773332 


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 043156          112 FDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWI  191 (578)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l  191 (578)
                               ....+.+.+++.|++.|++.+...++..+++.|++|+++      |++.+++.+...++|..++|.+++++
T Consensus        80 ---------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l  144 (352)
T PF07690_consen   80 ---------AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFL  144 (352)
T ss_dssp             ---------HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---------hhhhhHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhh
Confidence                     222555589999999999999999999999999999987      99999999999999999999999999


Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhc
Q 043156          192 QDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIET  271 (578)
Q Consensus       192 ~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (578)
                      .+.++|++.|++.++..++..++.....++.+++++.. +                     +.+.+  +           
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~-~---------------------~~~~~--~-----------  189 (352)
T PF07690_consen  145 ISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERE-S---------------------PKESE--S-----------  189 (352)
T ss_dssp             CCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT---S---------------------STTTT--------------
T ss_pred             hhccccccccccccchhhhhhhhHhhhhhhcccccccc-c---------------------ccccc--c-----------
Confidence            98889999999998887777664333332211111110 0                     00000  0           


Q ss_pred             ccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHH-hHHHHHHHHHHHHHhhhccchhhhhhhccC
Q 043156          272 EFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIIL-GMIPIFCCTIVMTLCLAQLQTFSIQQGLTM  350 (578)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (578)
                                  +..                .+++... +.....+... .....+.....+... ....+.+..+..+.
T Consensus       190 ------------~~~----------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~  239 (352)
T PF07690_consen  190 ------------KKP----------------KPLKPGF-KSLFKNPVLWILLIAFFLFFFVFSGF-SFFLPLYLQEVLGF  239 (352)
T ss_dssp             -------------HH----------------HCCCH-C-THHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHHCCHHHHC
T ss_pred             ------------ccc----------------ccccccc-ccccccchhhhhhhhhhHHHHHHHHh-hcccchhhhhccCC
Confidence                        000                0110000 0111111111 111111111122221 11112221221122


Q ss_pred             CCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 043156          351 DTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVAR  430 (578)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~  430 (578)
                      +   +   ....+.+.....+..++..++.+++.||+.+|           +...+......++.+.+....        
T Consensus       240 ~---~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~--------  294 (352)
T PF07690_consen  240 S---G---PSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-----------RRLLIAILLLILGALGLLLLP--------  294 (352)
T ss_dssp             C---T---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHHCCSH--------
T ss_pred             C---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHH--------
Confidence            2   0   01122334555666677788888888776655           233333333333333332221        


Q ss_pred             hcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHH
Q 043156          431 DHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFST  501 (578)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~  501 (578)
                                   ...+..+.....++.|++.+...+...++..+.+|++.||++.|+.+...++++.++|
T Consensus       295 -------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  295 -------------FSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             -------------HHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence                         0124456666778899999999999999999999999999999999999999999986

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.91  E-value=1.1e-22  Score=213.31  Aligned_cols=354  Identities=15%  Similarity=0.087  Sum_probs=230.6

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156           24 GIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE  103 (578)
Q Consensus        24 ~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~  103 (578)
                      +.|..+.+....+....+.....+.+| ++.+++|.|.++.+++.+.+.++..++.++.|+++||+ ||||++.++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            445555555555656666555555554 56789999999999999999999999999999999998 9999999998887


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      .++.++.          ...++...+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..+
T Consensus        81 ~~~~~~~----------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~  144 (385)
T TIGR00710        81 ALSSLGL----------ALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAV  144 (385)
T ss_pred             HHHHHHH----------HHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHH
Confidence            7665443          334677888999999999999999999999999999876      999999999999999999


Q ss_pred             HHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhch
Q 043156          184 SVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINM  263 (578)
Q Consensus       184 ~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (578)
                      +|.+++++.++++|++.|++.++..++..+..++..++.++++++. +.                       .   +   
T Consensus       145 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------------~---~---  194 (385)
T TIGR00710       145 APLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI-QI-----------------------S---T---  194 (385)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC-CH-----------------------H---H---
Confidence            9999999998889999999887776655554444332211100000 00                       0   0   


Q ss_pred             hhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHH-HHHHHHHHHhhhccchh
Q 043156          264 DKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPI-FCCTIVMTLCLAQLQTF  342 (578)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~~  342 (578)
                                       .+.+..                        +..++ ++....... ......++ .+....+.
T Consensus       195 -----------------~~~~~~------------------------~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~  231 (385)
T TIGR00710       195 -----------------YFETFL------------------------LLLKS-KMFWGYALIYGASFGGFF-AFFSGAPF  231 (385)
T ss_pred             -----------------HHHHHH------------------------HHHcC-chhHHHHHHHHHHHHHHH-HHHHcChH
Confidence                             000000                        00001 111111111 11111111 11111122


Q ss_pred             hhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHH
Q 043156          343 SIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFE  422 (578)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~  422 (578)
                      +..+..+.+.       ...+.+.....+..++..++.+++.||+.+|           +.+..+..+..++.+++....
T Consensus       232 ~~~~~~g~~~-------~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  293 (385)
T TIGR00710       232 VYIDIMGVSP-------SVFGLLFALNIIAMIFGGFLNGRFIKKWGAK-----------SLLRMGLILFAVSAVLLEITA  293 (385)
T ss_pred             HHHHHcCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence            2222111111       1123445556677888888899988877766           345556666666665554432


Q ss_pred             HHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 043156          423 VIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTI  502 (578)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~  502 (578)
                      ..                   ...+...++...++.+++.+...+.......+..| +.+|++.++.+.....++.+.+.
T Consensus       294 ~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~  353 (385)
T TIGR00710       294 IL-------------------GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGY  353 (385)
T ss_pred             Hh-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHH
Confidence            00                   01123344445667788888888888888888887 57999999998887765555555


Q ss_pred             HHHh
Q 043156          503 LVNI  506 (578)
Q Consensus       503 ~~~~  506 (578)
                      +.+.
T Consensus       354 ~~~~  357 (385)
T TIGR00710       354 LVSL  357 (385)
T ss_pred             HHHh
Confidence            5553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03699 putative transporter; Provisional

Probab=99.91  E-value=3.9e-22  Score=210.67  Aligned_cols=374  Identities=11%  Similarity=0.107  Sum_probs=238.9

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhh
Q 043156           23 GGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV  102 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~  102 (578)
                      +++|..+...+..++........-..++ .+.+++|+|.++.+++.+.+.++..++.+++|+++||+ ||||++.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMG-PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            4567777777777777676655555554 46789999999999999999999999999999999998 999999999888


Q ss_pred             hccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                      ..++.++.          ...++...+++.|+++|++.+...+...+++.|.+|+++      |++.++..+...++|+.
T Consensus        82 ~~i~~~l~----------~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~  145 (394)
T PRK03699         82 MILAVAGL----------MFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGM  145 (394)
T ss_pred             HHHHHHHH----------HHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHH
Confidence            77665543          334677888999999999999989999999999998876      99999998888999999


Q ss_pred             HHHHHHHHhcc-ccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhh
Q 043156          183 ISVTLIVWIQD-NKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEI  261 (578)
Q Consensus       183 ~~p~l~~~l~~-~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (578)
                      ++|.+.+++.. ..+||+.|.+.+++.++..+..+..  +.++.++++                      ++      + 
T Consensus       146 ~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~~--~~p~~~~~~----------------------~~------~-  194 (394)
T PRK03699        146 IFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLFS--EFPALGKHA----------------------PK------A-  194 (394)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhc--CCccccccC----------------------cc------c-
Confidence            99999888754 5799999998777655544433321  111100000                      00      0 


Q ss_pred             chhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHH-hHHHHHHHHHHHHHhhhccc
Q 043156          262 NMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIIL-GMIPIFCCTIVMTLCLAQLQ  340 (578)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~  340 (578)
                                    ...                     ..+.+|          .+++. ..+..++.....+....+.+
T Consensus       195 --------------~~~---------------------~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p  229 (394)
T PRK03699        195 --------------DKP---------------------VAKEKW----------GIGVLFLAIAALLYILAQLTFISWVP  229 (394)
T ss_pred             --------------cCc---------------------cccccC----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          000                     000111          01111 11111111122222222222


Q ss_pred             hhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHH
Q 043156          341 TFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAI  420 (578)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~  420 (578)
                      .+. .+..+.+..       ..+.+.....+...+..++.+++.||+.+|           +.+..+..+..+++.+...
T Consensus       230 ~~l-~~~~g~s~~-------~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-----------~~l~~~~~~~~~~~~~~~~  290 (394)
T PRK03699        230 EYA-QKKFGMSLE-------DAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ-----------RILTVLAGLALVLMYLFVN  290 (394)
T ss_pred             HHH-HHHcCCChH-------HhhHHHHHHHHHHHHHHHHHHHHHHHhchh-----------hHHHHHHHHHHHHHHHHHH
Confidence            222 222122211       123344445566778888888888777665           2333333333333333222


Q ss_pred             HHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHH
Q 043156          421 FEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFS  500 (578)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg  500 (578)
                      .                        .+..++....++.|++.+...+...++..+..|++ ++...+.......+|..++
T Consensus       291 ~------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~  345 (394)
T PRK03699        291 T------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLT  345 (394)
T ss_pred             c------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHH
Confidence            1                        12334444556677777777777777777777755 5777888888889999999


Q ss_pred             HHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 043156          501 TILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFM  552 (578)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  552 (578)
                      |.+.+.+.+..                  +++..|+..+++.+++.+...+.
T Consensus       346 p~~~G~l~~~~------------------g~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        346 FVVTSPIVAHF------------------GLQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHHh------------------CchhhhhhhHHHHHHHHHHHHHH
Confidence            99998876311                  23456777777776665543333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.91  E-value=1.9e-22  Score=215.05  Aligned_cols=167  Identities=17%  Similarity=0.192  Sum_probs=142.4

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhh
Q 043156           23 GGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV  102 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~  102 (578)
                      .+++......+..+...+.++.. .++..++++++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence            34555666666666666666554 4455677899999999999999999999999999999999998 999999999998


Q ss_pred             hccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                      .+++.++.          ....+...+++.|++.|++.+...+....++.|.+|+++      |+++.+++..+..+|..
T Consensus        93 ~~~~~~~~----------~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~  156 (426)
T PRK12307         93 YSVGTGLS----------GLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNI  156 (426)
T ss_pred             HHHHHHHH----------HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHH
Confidence            88665553          445678889999999999999999999999999999886      99999999999999999


Q ss_pred             HHHHHHHHhccccCchhHHHHHHHH
Q 043156          183 ISVTLIVWIQDNKGWDRGFGLSSVA  207 (578)
Q Consensus       183 ~~p~l~~~l~~~~g~~~~f~i~~~~  207 (578)
                      ++|.+.+.+.+.++||+.|++..+.
T Consensus       157 ~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        157 IAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             HHHHHHHHHcccCCHHHHHHHHHHH
Confidence            9999999998889999999885543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=2.7e-23  Score=209.35  Aligned_cols=414  Identities=13%  Similarity=0.046  Sum_probs=260.9

Q ss_pred             cccccccCCchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch
Q 043156           16 PAVKYKHGGIKTSLLILAAFGFENLATIALG---VNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGR   92 (578)
Q Consensus        16 ~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~---~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr   92 (578)
                      |..+..+.+.|--+-++...++...+||.++   ....+++.++.++|.+|.|.+.+.+.+.+.++-.+.|.++||. +.
T Consensus        15 p~~~~~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-np   93 (448)
T COG2271          15 PASEIDKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NP   93 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CC
Confidence            3434334455555666677788888888876   3466889999999999999999999999999999999999998 99


Q ss_pred             hhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHH
Q 043156           93 FKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNL  172 (578)
Q Consensus        93 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~  172 (578)
                      |+.+-+++++.++..++.          .++++...+.+..++.|..+|.-+|.+...++.++|.+|      ||+..++
T Consensus        94 r~fm~~gLilsai~nil~----------Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~si  157 (448)
T COG2271          94 RYFMAFGLILSAIVNILF----------GFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSI  157 (448)
T ss_pred             ceeehHHHHHHHHHHHHH----------hhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEE
Confidence            999999998888554443          566788889999999999999999999999999999998      9999999


Q ss_pred             HHHHHHHHHHHHHHHH--HHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccC
Q 043156          173 LFLAVCIGGAISVTLI--VWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLE  250 (578)
Q Consensus       173 ~~~~~~lG~~~~p~l~--~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (578)
                      ++.+.|+|+++.|.+.  +++..+++||..|++++++.++..+..++..+..|.+...  .+..+               
T Consensus       158 Wn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL--P~ie~---------------  220 (448)
T COG2271         158 WNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL--PPIEE---------------  220 (448)
T ss_pred             ehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC--CCHHH---------------
Confidence            9999999999999999  9999888999999999998766555555443332222110  11100               


Q ss_pred             CCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHH
Q 043156          251 LPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTI  330 (578)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~  330 (578)
                      ..+++.+.++.+           . +.+..                      .-|+.+. +.+...|.   .+.+....+
T Consensus       221 ~~~d~~e~~~~~-----------~-~~~~l----------------------s~~~i~~-~YVL~Nk~---iW~la~a~v  262 (448)
T COG2271         221 YRGDPLEIYEEE-----------K-ENEGL----------------------TAWQIFV-KYVLKNKL---IWLLALANV  262 (448)
T ss_pred             hhcCchhhhhhh-----------c-cCCCc----------------------cHHHHHH-HHHHcChH---HHHHHHHHH
Confidence            000111000000           0 00000                      0000000 01111111   112222223


Q ss_pred             HHHHhhhccc---hhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHh
Q 043156          331 VMTLCLAQLQ---TFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVG  407 (578)
Q Consensus       331 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG  407 (578)
                      ..|.....+.   +.+..+..+.+.       ....+.....-.+.+.+.-+.+++.|++.+.+. .       ..-.+.
T Consensus       263 fvYivR~gi~dW~p~YL~e~k~~s~-------~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR-~-------p~~~i~  327 (448)
T COG2271         263 FVYVVRYGINDWGPLYLSEVKGFSL-------VKANWAISLFEVAGLPGTLLAGWLSDKLFKGRR-G-------PMALIF  327 (448)
T ss_pred             HHHHHHHHHhhhHHHHHHHhcCCCH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhccccc-c-------hHHHHH
Confidence            3333322222   344444333332       123333344456777788888999988875421 0       111222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHH
Q 043156          408 LVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTC  487 (578)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g  487 (578)
                      ++...++++.....                      .+.+.+.....++.+|+-.-...-..-..+.|.+|++..|++.|
T Consensus       328 ~~~i~~~~~~~w~~----------------------~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~G  385 (448)
T COG2271         328 MLLITASLVLYWLA----------------------PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATG  385 (448)
T ss_pred             HHHHHHHHHHHHcC----------------------CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhc
Confidence            33333333222221                      12244444444455555332222223345669999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 043156          488 FLWCSMAL-GYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRY  556 (578)
Q Consensus       488 ~~~~~~~i-g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~  556 (578)
                      +..++..+ |+.++.+..+.+.+.       -+|           ...|.++.+.++++.+.++.+.+..
T Consensus       386 f~Glf~Yl~Ga~~a~~~~g~i~d~-------~gW-----------~g~Fi~~~~~a~l~~lll~~~~~~~  437 (448)
T COG2271         386 FVGLFAYLIGAALAGLPLGYIADT-------WGW-----------DGGFIVLSIAALLAILLLLPVWNAE  437 (448)
T ss_pred             hhhhHHHHhhHHhcCCcceeeEec-------CCC-----------cchHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999998 888888777766521       234           4567777777777777776665543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.91  E-value=1.5e-22  Score=218.97  Aligned_cols=175  Identities=14%  Similarity=0.112  Sum_probs=132.4

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156           24 GIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE  103 (578)
Q Consensus        24 ~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~  103 (578)
                      +.+.++......+......+...+.+ .++.+++|+|.++.+++.+.+.+++.++.+++|+++||+ |||+++.++.+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            34444444445555555555544444 467889999999999999999999999999999999998 9999999988887


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      +++.++.          ....+...+++.|+++|++.+...+ ...+++|++|+++      |++++++.+...++|..+
T Consensus       112 ~~~~~~~----------~~~~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~  174 (476)
T PLN00028        112 APAVFCM----------SLVSSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGV  174 (476)
T ss_pred             HHHHHHH----------HHhcCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHH
Confidence            7665443          3345777888899999998886543 4567899999886      999999998888888888


Q ss_pred             HHHHHHHhc----c-----ccCchhHHHHHHHHHHHHHHHHHh
Q 043156          184 SVTLIVWIQ----D-----NKGWDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       184 ~p~l~~~l~----~-----~~g~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      ++.+.+.+.    +     ..|||+.|++.+++.++..+..++
T Consensus       175 ~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        175 TQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            877665542    1     248999999988876655544443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.91  E-value=6.5e-23  Score=220.55  Aligned_cols=374  Identities=15%  Similarity=0.052  Sum_probs=225.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHH
Q 043156           50 VTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALL  129 (578)
Q Consensus        50 ~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (578)
                      ...+.+++|++.++.+++.+.+.+...++.+++|+++||+ |||++++.+.++..++.++.          ....+.+.+
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~----------~~~~~~~~l  110 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILA----------SFSSNVIEL  110 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHH----------HHhhhHHHH
Confidence            3456789999999999999999999999999999999998 99999999988777554443          334556655


Q ss_pred             HH-HHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHH
Q 043156          130 FV-ALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAV  208 (578)
Q Consensus       130 ~~-~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~  208 (578)
                      ++ .|++.|++.+...+...+++.++++ ++      |+++.++.+.+.++|..++|.+++++.+.+|||+.|++.+++.
T Consensus       111 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~  183 (455)
T TIGR00892       111 YLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLL  183 (455)
T ss_pred             HHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            54 5688899998766666788889886 44      9999999999999999999999999999899999999998876


Q ss_pred             HHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhh
Q 043156          209 FLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAI  288 (578)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (578)
                      +++.+..++..+..+.++..+ +...              ...+.+.                    ..++.......+.
T Consensus       184 ~~~~v~~~~~~~~~~~~~~~~-~~~~--------------~~~~~~~--------------------~~~~~~~~~~~~~  228 (455)
T TIGR00892       184 LHCCVCGALMRPVGPSQRVSK-SKSK--------------EGLPPDG--------------------STKKLSKKSTAEK  228 (455)
T ss_pred             HHHHHHHHHhCCCCccccccc-cccc--------------ccCCCCC--------------------ccccccccchhhh
Confidence            665554444433211100000 0000              0000000                    0000000000000


Q ss_pred             hccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccCc
Q 043156          289 QKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPIL  368 (578)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (578)
                      .             .++..  .+... .+....   ...........+....+++..+..  +.+..   ....+.+.+.
T Consensus       229 ~-------------~~~~~--~~~~~-~~~~~~---~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s---~~~~g~~~~~  284 (455)
T TIGR00892       229 I-------------NRFLD--FSLFT-HRGFLV---YLSGNVIMFLGFFAPIIFLVPYAK--DKGVD---EYEAAFLLSI  284 (455)
T ss_pred             h-------------hhhcc--hHHhc-CchHHH---HHHHHHHHHHHccchHHHHHHHHH--HcCCC---HHHHHHHHHH
Confidence            0             00000  00000 111111   111111111221111111111111  11111   1122344555


Q ss_pred             hhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchh
Q 043156          369 PILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPIST  448 (578)
Q Consensus       369 ~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (578)
                      ..+..++..|+.+++.|+...|.       .....+..+.++.+++++.+...                        .+.
T Consensus       285 ~~~~~~~~~~~~g~l~d~~~~~~-------~~~~~~~~~~~~~~l~~ll~~~~------------------------~~~  333 (455)
T TIGR00892       285 IGFVDIFARPSCGLIAGLKWIRP-------HVQYLFSFALLFNGLTHLLCALA------------------------GDY  333 (455)
T ss_pred             HHHHHHHHHHHHHHHhcccccCH-------HHHHHHHHHHHHHHHHHHHHHHh------------------------chH
Confidence            66777777888888876522110       11112233334334443333221                        144


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCc
Q 043156          449 FWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINR  528 (578)
Q Consensus       449 ~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (578)
                      +++++..++.|++.+...+...+++.+.+|++.+|++.|+.++..++|+.+|+.+.+.+.+..                 
T Consensus       334 ~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~-----------------  396 (455)
T TIGR00892       334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT-----------------  396 (455)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc-----------------
Confidence            556666778888888888888999999999999999999999999999999999988765211                 


Q ss_pred             chhHHHHHHHHHHHHHHHHH
Q 043156          529 NHLNLFFWLLSALSFINFSV  548 (578)
Q Consensus       529 ~~~~~~f~~~~~~~~i~~i~  548 (578)
                      ++|+..|++.+++.+++.+.
T Consensus       397 g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       397 KNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             CCcchHHHHhhHHHHHHHHH
Confidence            23556777777777666553

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.90  E-value=4.7e-22  Score=209.05  Aligned_cols=364  Identities=11%  Similarity=0.051  Sum_probs=235.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156           24 GIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE  103 (578)
Q Consensus        24 ~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~  103 (578)
                      +.|.++.++...++..++...+.+.+|.|.+ ++|.|..++|++.+.+.++..++.++.|+++||+ ||||++.++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~   81 (381)
T PRK03633          4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIF   81 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHH
Confidence            4566888899999999998888888988875 7899999999999999999999999999999998 9999999998888


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      .++.++.          ...++.+.+++.|++.|++.+...|...+.+.|..++++      |++.+++++.+.++|..+
T Consensus        82 ~~~~~~~----------~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~  145 (381)
T PRK03633         82 AAGCAGL----------GLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVL  145 (381)
T ss_pred             HHHHHHH----------HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHH
Confidence            8665443          345678889999999999999888887777788888765      999999999999999999


Q ss_pred             HHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhch
Q 043156          184 SVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINM  263 (578)
Q Consensus       184 ~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (578)
                      ||.+++++.+...+...+. .+......... .+.+  .+++++++ +                       +        
T Consensus       146 g~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~~~-~-----------------------~--------  189 (381)
T PRK03633        146 GQLLVSKVSTELMSVLPWV-TGLVLAAILPL-LFTR--ILNQQAEN-H-----------------------D--------  189 (381)
T ss_pred             HHHHHhcccccccchHHHH-HHHHHHHHHHH-HHhc--ccCCCCCC-C-----------------------C--------
Confidence            9999999877543333332 22221111111 1111  00000000 0                       0        


Q ss_pred             hhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHH-HHHHHHHHHHHhhhccchh
Q 043156          264 DKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMI-PIFCCTIVMTLCLAQLQTF  342 (578)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~~  342 (578)
                                  .   .++.                           +..+++ ...... ..+.....+...+...+ .
T Consensus       190 ------------~---~~~~---------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp-~  225 (381)
T PRK03633        190 ------------S---TSIW---------------------------PMLKLR-QARLGVNGCIISGIVLGSLYGLMP-L  225 (381)
T ss_pred             ------------C---CCHH---------------------------HHHHhc-chHHHHHHHHHHHHHHHHHHHHHH-H
Confidence                        0   0000                           000011 111110 01111111111222122 2


Q ss_pred             hhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHH
Q 043156          343 SIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFE  422 (578)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~  422 (578)
                      +..+ ...+.       ...+.+.....+..++...+.+++.||+.+|           +.+..+..+..++.+.... .
T Consensus       226 ~~~~-~g~s~-------~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~-----------~~l~~~~~~~~~~~~~~~~-~  285 (381)
T PRK03633        226 YLNH-QGMSD-------ASIGFWMALLVSAGILGQWPIGRLADRFGRL-----------LVLRVQVFVVILGSIAMLS-Q  285 (381)
T ss_pred             HHHH-cCCCH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHhh-h
Confidence            2211 11111       1123344455666777778888888877766           3455566665555433211 1


Q ss_pred             HHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 043156          423 VIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTI  502 (578)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~  502 (578)
                                              .  ......++.+++.....|...+.+.+..|++.++.+.+..++..++|+.+||.
T Consensus       286 ------------------------~--~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~  339 (381)
T PRK03633        286 ------------------------A--AMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPS  339 (381)
T ss_pred             ------------------------H--HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                    1  11223455666666778989999999999999898899999999999999999


Q ss_pred             HHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 043156          503 LVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVY  549 (578)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  549 (578)
                      +.+.+.+.                  .++++.|...+.+.++..+..
T Consensus       340 ~~G~l~~~------------------~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        340 FTAMLMQN------------------YSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHHHHH------------------hCccHHHHHHHHHHHHHHHHH
Confidence            99987631                  123456777766666554333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.90  E-value=6.6e-22  Score=208.77  Aligned_cols=348  Identities=15%  Similarity=0.071  Sum_probs=219.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |..+.+....++..++-..+...++. +.+++|.+..+.+++.+.+.+.+.++.+++|+++||+ ||||+++++.+++.+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence            45666777788877765555444444 4679999999999999999999999999999999998 999999999998876


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      +.+++          ....+   .++.|+++|++.+...|+..+++.|++|+++      |+++.++.....++|..+||
T Consensus        81 ~~~~~----------~~~~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp  141 (393)
T PRK11195         81 GCLLM----------LFGIH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGT  141 (393)
T ss_pred             HHHHH----------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence            54432          11222   2678999999999999999999999999876      99999999999999999999


Q ss_pred             HHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhh
Q 043156          186 TLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDK  265 (578)
Q Consensus       186 ~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (578)
                      .++|++.+. .|+..+++.+.+.+++.+.... .++.+.+++..                      ++++....+     
T Consensus       142 ~lgG~l~~~-~~~~~~~i~~~~~~~~~~~~~~-l~~~~~~~~~~----------------------~~~~~~~~~-----  192 (393)
T PRK11195        142 VLGGALADP-HAEAALAVCALIYLLAALFNLF-IPRLGARRPGQ----------------------SWNPIALLR-----  192 (393)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc-CCCCccccccc----------------------CCCHHHHHH-----
Confidence            999999874 4777777666554444333322 22211111100                      000000000     


Q ss_pred             hhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhcc---chh
Q 043156          266 EAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQL---QTF  342 (578)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~---~~~  342 (578)
                                     ++.+..+                        .+...+........   ...++......   ...
T Consensus       193 ---------------~~~~~~~------------------------~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  230 (393)
T PRK11195        193 ---------------DFFHACR------------------------VLWRDKLGRFSLAG---TTLFWGAGATLRFLVLA  230 (393)
T ss_pred             ---------------HHHHHHH------------------------HHHhCchhHHHHHH---HHHHHHHHHHHHHHHHH
Confidence                           0000000                        00000111011101   11111111111   112


Q ss_pred             hhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHH
Q 043156          343 SIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFE  422 (578)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~  422 (578)
                      +.++..+.+.       ...+.+.....++.++..++.+++.++..+|           +.+..|+ ++++..+..... 
T Consensus       231 ~~~~~lg~s~-------~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~-----------~~~~~g~-~~~~~~~~~~~~-  290 (393)
T PRK11195        231 WAPVALGITL-------NQPAYLQAVVAIGIAVGAGAAARLVTLETVL-----------RVLPAGI-LMGLVVLLMALQ-  290 (393)
T ss_pred             HHHHHcCCCh-------hHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----------chHHHHH-HHHHHHHHHHHH-
Confidence            2222222111       1234455556677777777777776543322           2344453 333333333221 


Q ss_pred             HHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchh-hHHHHHHHHHHHHHHHHHHH
Q 043156          423 VIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGI-KSLSTCFLWCSMALGYFFST  501 (578)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~-rg~~~g~~~~~~~ig~~lg~  501 (578)
                                             .+.++.+...++.|++.++..++.++...+..|++. +|++.++.++.++++..++.
T Consensus       291 -----------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~  347 (393)
T PRK11195        291 -----------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLML  347 (393)
T ss_pred             -----------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHH
Confidence                                   144555666778889888888888888888777765 79999999999999999999


Q ss_pred             HHHHhhh
Q 043156          502 ILVNIVN  508 (578)
Q Consensus       502 ~~~~~~~  508 (578)
                      .+.+.+.
T Consensus       348 ~~~~~~~  354 (393)
T PRK11195        348 GLYSLLV  354 (393)
T ss_pred             HHHHHHH
Confidence            8888664

>TIGR00895 2A0115 benzoate transport

Probab=99.90  E-value=4.4e-22  Score=209.28  Aligned_cols=379  Identities=15%  Similarity=0.095  Sum_probs=229.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156           24 GIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE  103 (578)
Q Consensus        24 ~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~  103 (578)
                      +++......+..+........ ..+...++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~   92 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAA-MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence            344444444455555444443 34445567788999999999999999999999999999999998 9999999998877


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      .++.++.          ....+...+++.|++.|++.+...+...+++.|.+|+++      |++++++++.+.++|..+
T Consensus        93 ~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~  156 (398)
T TIGR00895        93 SVFTLLC----------ALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAV  156 (398)
T ss_pred             HHHHHHH----------HHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHH
Confidence            7554443          334677788899999999999999999999999999876      999999999999999999


Q ss_pred             HHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceec-CCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhc
Q 043156          184 SVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQ-VVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEIN  262 (578)
Q Consensus       184 ~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (578)
                      +|.+++++.+..||++.|++.++...+..+..+...++.++. .+++++...+.   ...... +...  +         
T Consensus       157 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~--~---------  221 (398)
T TIGR00895       157 GGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRI---VNAIAP-QMQA--E---------  221 (398)
T ss_pred             HHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHH---HHHHHH-hccc--c---------
Confidence            999999999989999999988655444443333333221110 00000000000   000000 0000  0         


Q ss_pred             hhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhh--hHHHHHh-HHHHHHHHHHHHHhhhcc
Q 043156          263 MDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVE--NAKIILG-MIPIFCCTIVMTLCLAQL  339 (578)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~~-~~~~~~~~~~~~~~~~~~  339 (578)
                             .....++.+..                     ...++...+...+  ..+.... .+...+....++......
T Consensus       222 -------~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (398)
T TIGR00895       222 -------AQSALPEQKAT---------------------QGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWL  273 (398)
T ss_pred             -------ccccccccccc---------------------cchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   00000000000                     0000000000000  0111111 111111111111111111


Q ss_pred             chhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHH
Q 043156          340 QTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAA  419 (578)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~  419 (578)
                       +.+... .+.+       ....+.+.....+..++..++.+++.||+.+|            ++..+..+.++....+.
T Consensus       274 -~~~~~~-~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~~~  332 (398)
T TIGR00895       274 -PKLMVE-LGFS-------LSLAATGGALFNFGGVIGSIIFGWLADRLGPR------------VTALLLLLGAVFAVLVG  332 (398)
T ss_pred             -HHHHHH-cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH------------HHHHHHHHHHHHHHHHH
Confidence             111111 1111       11123444555677788888888888776554            23333333333332222


Q ss_pred             HHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHH
Q 043156          420 IFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFF  499 (578)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l  499 (578)
                      ...                       .+.+......++.+++.+...+..+++..+.+|++.||++.|+.+....+|..+
T Consensus       333 ~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  389 (398)
T TIGR00895       333 STL-----------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAII  389 (398)
T ss_pred             HHh-----------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            211                       133344556677888888889999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 043156          500 STILVNIV  507 (578)
Q Consensus       500 g~~~~~~~  507 (578)
                      ++.+.+.+
T Consensus       390 g~~~~G~l  397 (398)
T TIGR00895       390 GPILAGYL  397 (398)
T ss_pred             HHHhHHhc
Confidence            99988753

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.90  E-value=7.2e-22  Score=208.55  Aligned_cols=376  Identities=13%  Similarity=0.023  Sum_probs=222.8

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchhhhhh-hh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMG-TSYILSIVVALLADAFIGRFKAVL-IS   99 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grr~~~~-~~   99 (578)
                      +...+..+..++..++..++...+.+.++.|+.+++|+|.++.|++.+...+ +..+.++++|+ +||+ ||||.++ .+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~   88 (393)
T PRK15011         11 KSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFC   88 (393)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHH
Confidence            3445566777778899999988889999999999999999999999877655 55555555666 9998 9998765 44


Q ss_pred             hhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhh--hHHHHHHHHH
Q 043156          100 GSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMS--SFFNLLFLAV  177 (578)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~--~~~~~~~~~~  177 (578)
                      .++.+++..+.          ....+.+.+++.+.+.+...+...|...++..|+.++++      |.  ...++.+.+.
T Consensus        89 ~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  152 (393)
T PRK15011         89 CLLGVLACTLF----------AWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFSSFLRAQV  152 (393)
T ss_pred             HHHHHHHHHHH----------HHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHHHHHHHHH
Confidence            44433332221          334556655544444343344567777788888776554      43  3447888899


Q ss_pred             HHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchh
Q 043156          178 CIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPME  257 (578)
Q Consensus       178 ~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (578)
                      ++|..++|.+++++.+++|||..|++.++..++..+..+...++.+.+++..                         +. 
T Consensus       153 ~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~-  206 (393)
T PRK15011        153 SLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLA-------------------------TG-  206 (393)
T ss_pred             HHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccc-------------------------cc-
Confidence            9999999999999998899999999888766655544443333211111000                         00 


Q ss_pred             hhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhh
Q 043156          258 LYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLA  337 (578)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~  337 (578)
                        +             .   +                        . .       .++++...............+..+.
T Consensus       207 --~-------------~---~------------------------~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~  236 (393)
T PRK15011        207 --T-------------L---E------------------------A-P-------RRNRRDTLLLFVICTLMWGTNSLYI  236 (393)
T ss_pred             --c-------------c---c------------------------c-c-------ccccccHHHHHHHHHHHHHHHHHHH
Confidence              0             0   0                        0 0       0001111111111011111111111


Q ss_pred             ccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHH
Q 043156          338 QLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAI  417 (578)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~  417 (578)
                      ...+.+.++..+.+..       ..+.+.....+..++..++.+++.||+++|           +.+..+.+...+.+..
T Consensus       237 ~~~p~~l~~~~~~~~~-------~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~-----------~~~~~~~~~~~~~~~~  298 (393)
T PRK15011        237 INMPLFIINELHLPEK-------LAGVMMGTAAGLEIPTMLIAGYFAKRLGKR-----------FLMRVAAVAGVCFYAG  298 (393)
T ss_pred             HHHHHHHHHHcCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----------HHHHHHHHHHHHHHHH
Confidence            1122222222122211       122233333445556678889998888776           2344444444333322


Q ss_pred             HHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHH
Q 043156          418 AAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGY  497 (578)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~  497 (578)
                      +....                        +.+++....++.+++.+...+....+..+.+|++ ||+++++.+...++|.
T Consensus       299 ~~~~~------------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~  353 (393)
T PRK15011        299 MLMAH------------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGW  353 (393)
T ss_pred             HHHHh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHH
Confidence            22211                        2333333444455555555555556667888865 9999999999999999


Q ss_pred             HHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 043156          498 FFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFM  552 (578)
Q Consensus       498 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  552 (578)
                      .+++.+.+.+.+                  ..+|+..|+..+++.+++++++++.
T Consensus       354 ~~g~~l~G~i~~------------------~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        354 IIAGSLAGIVAE------------------IWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHH------------------HhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            999999998762                  1246677888788888877777654

>TIGR00898 2A0119 cation transport protein

Probab=99.90  E-value=3.4e-22  Score=218.06  Aligned_cols=389  Identities=14%  Similarity=0.115  Sum_probs=234.1

Q ss_pred             HHHHHhcCCC---HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhH
Q 043156           51 TYFNGVLHLD---LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAA  127 (578)
Q Consensus        51 ~yl~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (578)
                      ..+.+++|++   ..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.          ...+++.
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~----------~~~~~~~  181 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLT----------AFSPNYT  181 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHH----------HHcccHH
Confidence            3467889999   89999999999999999999999999998 99999999988888665553          4457888


Q ss_pred             HHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHH
Q 043156          128 LLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVA  207 (578)
Q Consensus       128 ~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~  207 (578)
                      .+++.|++.|++.+...+...+++.|++|+++      |++..+++..+..+|.+++|.++..+.+   ||+.|++.++.
T Consensus       182 ~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~  252 (505)
T TIGR00898       182 VFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLP  252 (505)
T ss_pred             HHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHH
Confidence            99999999999999999999999999999987      9999999999999999999988876653   99999998887


Q ss_pred             HHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhh
Q 043156          208 VFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAA  287 (578)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (578)
                      .++..+..++..+..+....+  ....+..+.+....+......+   .+..+..                    .+.. 
T Consensus       253 ~~~~~~~~~~~~esp~~l~~~--~~~~~a~~~l~~~~~~~~~~~~---~~~~~~~--------------------~~~~-  306 (505)
T TIGR00898       253 TFLFFLLSWFVPESPRWLISQ--GRIEEALKILQRIAKINGKKLP---AEVLSLS--------------------LEKD-  306 (505)
T ss_pred             HHHHHHHHHhcCCChHHHHHC--CCHHHHHHHHHHHHHHcCCCCC---HHHHhhh--------------------hhhh-
Confidence            666655544332211100001  1111222222211111110000   0000000                    0000 


Q ss_pred             hhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccC
Q 043156          288 IQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPI  367 (578)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (578)
                       ... .      .....++    +-.+++ +.....   ......|............   ..+ .++    ........
T Consensus       307 -~~~-~------~~~~~~~----~l~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~-~~~----~~~~~~~~  362 (505)
T TIGR00898       307 -LSS-S------KKQYSFL----DLFRTP-NLRKTT---LCLMMLWFTTAFSYYGLVL---DLG-NLG----GNIYLDLF  362 (505)
T ss_pred             -hhh-c------cCCCcHH----HHhCCh-HHHHHH---HHHHHHHHHHHHHHHHHhc---ccc-ccC----CChHHHHH
Confidence             000 0      0000010    000011 111110   0111111111100000000   101 111    11111222


Q ss_pred             chhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccch
Q 043156          368 LPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPIS  447 (578)
Q Consensus       368 ~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (578)
                      ...+..+....+.+.+.||++||           +.+.+++++.+++++.+.+..                      ...
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~grr-----------~~~~~~~~~~~~~~l~~~~~~----------------------~~~  409 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRLGRR-----------YTMAASLLLAGVALLLLLFVP----------------------VDL  409 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHHHHHHHcC----------------------CCc
Confidence            33444555666677788877776           456667777777766555532                      112


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCC
Q 043156          448 TFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNIN  527 (578)
Q Consensus       448 ~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (578)
                      .++.+...++.+++.....+..+.+..|.+|++.|++++|+.+....+|+.++|.+.+ +..                  
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~------------------  470 (505)
T TIGR00898       410 YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE------------------  470 (505)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH------------------
Confidence            2333444455566666777888899999999999999999999999999999998887 321                  


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q 043156          528 RNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTS  563 (578)
Q Consensus       528 ~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~  563 (578)
                       .+....+++.+++++++.++.+++ ++.++++.++
T Consensus       471 -~~~~~~~~~~~~~~~~~~~~~~~l-pet~~~~l~~  504 (505)
T TIGR00898       471 -KWLFLPLVLFGGLALLAGILTLFL-PETKGVPLPE  504 (505)
T ss_pred             -HHHhhHHHHHHHHHHHHHHHHHcC-cCCCCCCCCC
Confidence             112245777777777776665543 5555554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.90  E-value=3.5e-22  Score=217.47  Aligned_cols=170  Identities=16%  Similarity=0.204  Sum_probs=145.0

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      +.+++.+..+.+..++..+.+......+ .++.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            4566777777777777777766555444 567789999999999999999999999999999999998 99999999988


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      +.+++.++.          ....+...+++.|++.|++.+...+...+++.|.+|+++      |++++++++.+.++|.
T Consensus        94 ~~~~~~~~~----------~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~  157 (496)
T PRK03893         94 LFSVGTLAC----------GFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGA  157 (496)
T ss_pred             HHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHH
Confidence            887665553          345678889999999999999999999999999999876      9999999999999999


Q ss_pred             HHHHHHHHHhccccCchhHHHHHHHHHH
Q 043156          182 AISVTLIVWIQDNKGWDRGFGLSSVAVF  209 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g~~~~f~i~~~~~~  209 (578)
                      .++|.+.+++.++++||+.|++.++..+
T Consensus       158 ~~~~~~~~~l~~~~~w~~~f~~~~~~~~  185 (496)
T PRK03893        158 VVAAQVYSLVVPVWGWRALFFIGILPII  185 (496)
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            9999999999999999999987544433

>PRK11043 putative transporter; Provisional

Probab=99.90  E-value=9.8e-22  Score=208.02  Aligned_cols=163  Identities=17%  Similarity=0.225  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHH--HHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCC
Q 043156           38 ENLATIALGVNLVTY--FNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPT  115 (578)
Q Consensus        38 ~~~~~~~~~~~l~~y--l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~  115 (578)
                      ....++....+.|.+  +++++|.+.++.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.     
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-----   88 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGM-----   88 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHH-----
Confidence            333444444444443  6789999999999999999999999999999999998 99999999988777554443     


Q ss_pred             CCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 043156          116 AGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNK  195 (578)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~  195 (578)
                           ....+...+++.|+++|++.+...+...+++.|.+|+++      |.+.++......++|..++|.+++++.+++
T Consensus        89 -----~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  157 (401)
T PRK11043         89 -----LWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHF  157 (401)
T ss_pred             -----HHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                 334677888999999999988877777889999999875      888888888889999999999999999989


Q ss_pred             CchhHHHHHHHHHHHHHHHHHh
Q 043156          196 GWDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       196 g~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      ||++.|++.++..++..+..+.
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        158 GWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887776665544443

>TIGR00897 2A0118 polyol permease family

Probab=99.90  E-value=3.9e-21  Score=203.58  Aligned_cols=390  Identities=14%  Similarity=-0.003  Sum_probs=241.3

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      -..||.+....+..+....+.+...++++.++ +++|+|.++.+++.+.+.++..++.++.|+++||+ ||||++..+.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~   86 (402)
T TIGR00897         9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL   86 (402)
T ss_pred             cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence            35678888888888888888888888888888 67899999999999999999999999999999998 99999999988


Q ss_pred             hhccCCcccccCCCCCccccc-cchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIE-GSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIG  180 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG  180 (578)
                      +..++.++.       ..... ..+...+++.|++.|+|.+...+...+.+.+.+|+++      |++++++++.+.++|
T Consensus        87 ~~~~~~~~~-------~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g  153 (402)
T TIGR00897        87 LWCVGHAAF-------IVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIG  153 (402)
T ss_pred             HHHHHHHHH-------HHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHH
Confidence            887554321       00011 2466777889999999988877777788889998876      999999999999999


Q ss_pred             H-HHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhh
Q 043156          181 G-AISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELY  259 (578)
Q Consensus       181 ~-~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (578)
                      . .++|.+++++.+.+||+..++.......++.+..++..++.+  +|++ .                  +.+++    .
T Consensus       154 ~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------------~~~~~----~  208 (402)
T TIGR00897       154 IGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIF--TPQH-M------------------QTREK----F  208 (402)
T ss_pred             HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCC--Cccc-c------------------cCCcc----h
Confidence            6 689999999988888776665544333333332222222110  1110 0                  00000    0


Q ss_pred             hhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhcc
Q 043156          260 EINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQL  339 (578)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  339 (578)
                      +                    +..+                   .++    .-.++++........++....++......
T Consensus       209 ~--------------------~~~~-------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (402)
T TIGR00897       209 S--------------------ELGK-------------------AAT----ILFTNPNVLLGGMVRIINTIGLFGFAVFL  245 (402)
T ss_pred             h--------------------hHHH-------------------HHH----HHHcChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            0                    0000                   000    00011111111111112222222222222


Q ss_pred             chhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHH
Q 043156          340 QTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAA  419 (578)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~  419 (578)
                      + .+.++ .+.+..       ..+.+.....+..++..++.+++.||+.+|+          .....+.+...++.+.+.
T Consensus       246 p-~~~~~-~g~s~~-------~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~----------~~~~~~~l~~~~~~~~l~  306 (402)
T TIGR00897       246 P-MFVAE-LGFSTS-------EWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN----------TVRWFGGVGCGIFTLALY  306 (402)
T ss_pred             H-HHHHH-cCCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHhhcchh----------HHHHHHHHHHHHHHHHHH
Confidence            2 22222 122211       1223334456777888889999998877662          111222223333322222


Q ss_pred             HHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHH
Q 043156          420 IFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFF  499 (578)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l  499 (578)
                      ....                   ....+.+...+..++.+++.....+. .....+..| +.||++.|+.++...+++.+
T Consensus       307 ~~~~-------------------~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~  365 (402)
T TIGR00897       307 YIPQ-------------------HFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFL  365 (402)
T ss_pred             HHHH-------------------ccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHH
Confidence            2110                   00113344455566777776665443 344445544 58999999999999999999


Q ss_pred             HHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 043156          500 STILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFM  552 (578)
Q Consensus       500 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  552 (578)
                      +|.+.+.+.+.                  .++...|+..+++.+++.+...++
T Consensus       366 gp~i~g~l~~~------------------~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       366 APAIAVLFIGF------------------FGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHhh------------------cchHHHHHHHHHHHHHHHHHHHHh
Confidence            99999887631                  234567888888888877776664

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.89  E-value=3.3e-22  Score=213.04  Aligned_cols=393  Identities=9%  Similarity=-0.014  Sum_probs=236.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      +..|.+....++..+++....++++.|+++++|+|..+.|.+.+.+.++..+++++.|+++||+ ||||++.++..+...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4667777788888888888899999999999999999999999999999999999999999998 999999886655442


Q ss_pred             CCcccccCCCCCccccccchhH-HHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAA-LLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      +....       .......... ....+..+.++..+...+.....+.++.+...    ++|+..++..+...++|..++
T Consensus        89 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~g~~~~~~~~g~~i~  157 (420)
T PRK09528         89 LFGPF-------FIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFEYGRARMWGSLGWALC  157 (420)
T ss_pred             HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccccchhhHHhhhHHHHHH
Confidence            21110       0000000000 01122222233333333333333444432111    236778888888899999999


Q ss_pred             HHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchh
Q 043156          185 VTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMD  264 (578)
Q Consensus       185 p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (578)
                      |.+++++.+ .+|+++|++.+++.+++.+..+...++.++++..+                    +  + +    +.   
T Consensus       158 ~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~--~-~----~~---  206 (420)
T PRK09528        158 AFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA--------------------N--A-L----GA---  206 (420)
T ss_pred             HHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhc--------------------c--c-h----hc---
Confidence            999999976 48999999888776665555444332211100000                    0  0 0    00   


Q ss_pred             hhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhh-hccchhh
Q 043156          265 KEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCL-AQLQTFS  343 (578)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~~~~  343 (578)
                                 ..+....-+...                        ..+ .+.+.......+.....+... .+.+.++
T Consensus       207 -----------~~~~~~~~~~~~------------------------~l~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~  250 (420)
T PRK09528        207 -----------NASAVSLKDALA------------------------LLK-LPKFWFLVLYVIGVACFYDVFDQQFPNFF  250 (420)
T ss_pred             -----------ccccccHHHHHH------------------------Hcc-CCCeEeehHHHHHHHHHHHHHHHHHHHHH
Confidence                       000000000000                        000 011111111111111222222 2222332


Q ss_pred             hhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHH
Q 043156          344 IQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEV  423 (578)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~  423 (578)
                      .+...  +...+   ....+.+.+++.+...+..++.+++.||+++|           +.+.++.++.+++++..++.. 
T Consensus       251 ~~~~~--~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~l~~~~~~l~~~~~-  313 (420)
T PRK09528        251 ASFFA--TPEQG---TRVFGYLNSFQVFLEALIMFFAPFIINRIGAK-----------NALLLAGTIMAVRIIGSGFAT-  313 (420)
T ss_pred             HHHHh--ccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHhcc-
Confidence            22211  11111   01123445555666778888999999888877           346666777777766665532 


Q ss_pred             HHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHH-HHHHHHHHHHHHHH
Q 043156          424 IRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCF-LWCSMALGYFFSTI  502 (578)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig~~lg~~  502 (578)
                                             ++++++...++.+++.....+....++.+..|++.+++..+. +++...+|+.+++.
T Consensus       314 -----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~  370 (420)
T PRK09528        314 -----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST  370 (420)
T ss_pred             -----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH
Confidence                                   455666667778888877777778888899999999988665 67888999999999


Q ss_pred             HHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccc
Q 043156          503 LVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSR  555 (578)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~  555 (578)
                      +.+.+.+.                  .+|+..|...+++.++..++.++..++
T Consensus       371 ~~G~l~~~------------------~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        371 LAGNLYDS------------------IGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHh------------------hCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99887621                  235677888888887777666655443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.89  E-value=5.3e-24  Score=222.97  Aligned_cols=365  Identities=31%  Similarity=0.479  Sum_probs=237.9

Q ss_pred             hhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHH
Q 043156           93 FKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNL  172 (578)
Q Consensus        93 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~  172 (578)
                      .|+++++.+++.+|.++++++...... ....+...++++..++++|.|+..|+..++++|++++++.   ++|.+++++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~-~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~F~~   76 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSL-PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSFFNW   76 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC-------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHHHHH
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchh-hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhhHHH
Confidence            478888888888887664221111111 1223456789999999999999999999999999998742   469999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceec-CCCCcchHHH-HHHHHHHHHHhcccC
Q 043156          173 LFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQ-VVQGSSVLIE-IIQVYVAAIRNRKLE  250 (578)
Q Consensus       173 ~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~  250 (578)
                      +|++.|+|+.+++.+.+++.+++||.+.|.++++..+++++.++..++++++. +|.+ +++.+ ...+.....+++...
T Consensus        77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  155 (372)
T PF00854_consen   77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGG-SPLTNFIKLVLVAAFKKRKLA  155 (372)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S------S--S--SHHHHHHHHHHHCCC
T ss_pred             HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCC-cccchhHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999998888887 5555 66666 444445555555555


Q ss_pred             CCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCcc-ccchhhhhHHHHHhHHHHHHHH
Q 043156          251 LPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKL-CRVTQVENAKIILGMIPIFCCT  329 (578)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~~~~~~~~~  329 (578)
                      .+....+..+.....+    ......  ...............         ..|.. +..+.+++.|.+.+.++.+...
T Consensus       156 ~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~k~~~~~~~~~~~~  220 (372)
T PF00854_consen  156 VPKGSSWLDWALFQYS----ERSIFG--IIVFIRAAVIFFPEI---------FFWALFCQVQRVEELKALIRFLPIFLFW  220 (372)
T ss_dssp             H-HHHHHHHHHHHHHC----CCCCCC--CCCHHHHHHHHCCCH---------HHHTTTSSTTTHHHCCHHHCHHHCCCHH
T ss_pred             cccchHHHHHhhhhhh----hhhhhh--hhhhccchhhhhhhh---------hhcccCCccceeeeeeeeeeccccCeEE
Confidence            4432222222111100    000000  000011000000000         01110 1224456677777777777778


Q ss_pred             HHHHHhhhccchhhhhhhccCCCCCCCc-eeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhH
Q 043156          330 IVMTLCLAQLQTFSIQQGLTMDTSVTTS-FHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGL  408 (578)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~  408 (578)
                      +.+++++.+.......+...+|..++ + +.+|+.++.++|++.++++.|+.+++.+++.++    +..++.+.++.+|+
T Consensus       221 i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~----~~~~~~~~k~~~G~  295 (372)
T PF00854_consen  221 IFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR----GIQPSPPQKFGIGM  295 (372)
T ss_dssp             HHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-
T ss_pred             EEeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh----cccchhhhhhhHHH
Confidence            88888888888888888877877777 5 889999999999999999999999999999984    24568999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHH
Q 043156          409 VLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCF  488 (578)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~  488 (578)
                      +++.+++++....+..+....+.+|           ..+.+|.+..+++..++|.+..+...+..+|.+|++..+..+|+
T Consensus       296 ~~~~~~~~~~~~v~~~r~~~~~~~~-----------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~  364 (372)
T PF00854_consen  296 VFAILAMFVAAIVEIRRLCYAQPCG-----------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGI  364 (372)
T ss_dssp             HHHHHHHHTTTHHHH---HH----T-----------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHH
T ss_pred             HHHHHHHHHHHHHHhhhhhcccccC-----------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHH
Confidence            9999999988887764443333333           34447888999999999999999999977777777777777777


Q ss_pred             HHHHH
Q 043156          489 LWCSM  493 (578)
Q Consensus       489 ~~~~~  493 (578)
                      +....
T Consensus       365 ~~~~~  369 (372)
T PF00854_consen  365 WFALS  369 (372)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            76554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.89  E-value=1.4e-21  Score=206.35  Aligned_cols=384  Identities=10%  Similarity=0.002  Sum_probs=235.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNG-VLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      .+.+....+...+....+.+.+...+.+ ++|+|.+|.+++.+++.+++.++.++.|+++||+ |.||++.++.++..++
T Consensus        35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~  113 (462)
T PRK15034         35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIP  113 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHH
Confidence            3334445555556656666666667655 8999999999999999999999999999999998 9999999999988876


Q ss_pred             CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVT  186 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~  186 (578)
                      .++..+     ......+++..+++.|++.|++ +..++.....+++++|+++      |+++++++....|+|..+++.
T Consensus       114 ~~~~~~-----a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~  181 (462)
T PRK15034        114 CVWLGI-----AVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQL  181 (462)
T ss_pred             HHHHHH-----HHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHH
Confidence            655300     0000126788999999999998 6678888999999999887      999999997777777776666


Q ss_pred             HHHHhc-----c-------------ccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcc
Q 043156          187 LIVWIQ-----D-------------NKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRK  248 (578)
Q Consensus       187 l~~~l~-----~-------------~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (578)
                      +++.+.     .             ..+|+.++++..+..++..+..++..++.++   .+ ....+...          
T Consensus       182 l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~-~~~~~~~~----------  247 (462)
T PRK15034        182 VAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SR-ASIADQLP----------  247 (462)
T ss_pred             HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cc-cCHHHHHH----------
Confidence            554422     1             2347777777766665555554544332111   11 00000000          


Q ss_pred             cCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHH
Q 043156          249 LELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCC  328 (578)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~  328 (578)
                                                                                     ..++.+..+ ...+..+
T Consensus       248 ---------------------------------------------------------------vlk~~~~Wl-lslly~~  263 (462)
T PRK15034        248 ---------------------------------------------------------------VLQRLHLWL-LSLLYLA  263 (462)
T ss_pred             ---------------------------------------------------------------HhCCCchhH-HHHHHHH
Confidence                                                                           001111111 1122222


Q ss_pred             HHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhH
Q 043156          329 TIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGL  408 (578)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~  408 (578)
                      ....+..+....+++....  .+.       ........+-++...+..|+.+++.||+++|           +.+.+++
T Consensus       264 tFG~fvg~s~~lp~~~~~~--~~~-------~~~l~~~~l~~l~~~l~rplgG~LADRiG~~-----------~vl~~~~  323 (462)
T PRK15034        264 TFGSFIGFSAGFAMLAKTQ--FPD-------VNILRLAFFGPFIGAIARSVGGAISDKFGGV-----------RVTLINF  323 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHH--cCh-------HHHHHHHHHHHHHHHHHHHhhHHHHHhcCch-----------HHHHHHH
Confidence            2222332322222222111  110       0011112223566788889999999988887           3455566


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCc---------
Q 043156          409 VLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPK---------  479 (578)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~---------  479 (578)
                      +.+.++...+.....                  .....+.+.....++...++.++.+-...-++.+++|+         
T Consensus       324 i~~~i~~~~~~l~lp------------------~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~  385 (462)
T PRK15034        324 IFMAIFSALLFLTLP------------------GTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMK  385 (462)
T ss_pred             HHHHHHHHHHHHHhc------------------cccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccc
Confidence            555555433222210                  00112344444444444444444444444455556663         


Q ss_pred             ------------hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHH
Q 043156          480 ------------GIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFS  547 (578)
Q Consensus       480 ------------~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i  547 (578)
                                  +..|.+.|+......+|+++-|.+.+...+.+                 +++...|+.+.+..++|++
T Consensus       386 ~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~-----------------g~~~~~~~~~~~~~~~~~~  448 (462)
T PRK15034        386 GGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT-----------------GSPVGAMKVFLIFYIVCVL  448 (462)
T ss_pred             ccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc-----------------CCcHHHHHHHHHHHHHHHH
Confidence                        25788899999999999999997777665322                 3356779999999999999


Q ss_pred             HHhhhccccc
Q 043156          548 VYLFMSSRYN  557 (578)
Q Consensus       548 ~~~~~~~~~~  557 (578)
                      +-+..+.|..
T Consensus       449 ~~w~~y~r~~  458 (462)
T PRK15034        449 LTWLVYGRRK  458 (462)
T ss_pred             HHHHHhccCC
Confidence            9988887754

>PRK15075 citrate-proton symporter; Provisional

Probab=99.89  E-value=3.2e-21  Score=206.37  Aligned_cols=164  Identities=14%  Similarity=0.055  Sum_probs=123.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHH-----HHHHHhHHHHHhhhccchhhhhhh
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQV-TNYMGT-----SYILSIVVALLADAFIGRFKAVLI   98 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~-~~~~~~-----~~~~~~~~G~laD~~~Grr~~~~~   98 (578)
                      ++....+++..+++.+....+. +..+.+.++++.++.+.+... +...+.     ..++.++.|+++||+ ||||+++.
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   91 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV   91 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence            3456666667777777766544 444578889998887765443 332222     235788999999998 99999999


Q ss_pred             hhhhhccCCcccccCCCCCccccccchhH--------HHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHH
Q 043156           99 SGSVEFLPPPCNVFDPTAGCKKIEGSDAA--------LLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFF  170 (578)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~  170 (578)
                      +.+++.++.++.          ...++..        .++++|+++|++.+...++...+++|++|+++      |++.+
T Consensus        92 ~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~  155 (434)
T PRK15075         92 TLSIMASGTLLI----------AFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYT  155 (434)
T ss_pred             HHHHHHHHHHHH----------HhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHH
Confidence            999888665554          2233333        46899999999999999988999999999987      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc--------cccCchhHHHHHHH
Q 043156          171 NLLFLAVCIGGAISVTLIVWIQ--------DNKGWDRGFGLSSV  206 (578)
Q Consensus       171 ~~~~~~~~lG~~~~p~l~~~l~--------~~~g~~~~f~i~~~  206 (578)
                      +++....++|..+++.+++.+.        +.+|||++|++..+
T Consensus       156 ~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        156 SWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            9999888888888888777652        46799999987544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.89  E-value=5.2e-22  Score=212.72  Aligned_cols=159  Identities=11%  Similarity=0.038  Sum_probs=126.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhH
Q 043156           48 NLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAA  127 (578)
Q Consensus        48 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (578)
                      +...++++ +|+|.++.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++...      ......+..
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  119 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGF------VPWATSSIA  119 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhc------cccccchHH
Confidence            34456665 599999999999999999999999999999998 9999999988887766444210      001124566


Q ss_pred             HHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-cccCchhHHHHHHH
Q 043156          128 LLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQ-DNKGWDRGFGLSSV  206 (578)
Q Consensus       128 ~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~-~~~g~~~~f~i~~~  206 (578)
                      .+++.|++.|++.+...+.....+.|++|+++      |++++++++.+.++|+.++|.+.+.+. .+.+||+.|++.++
T Consensus       120 ~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~  193 (438)
T TIGR00712       120 IMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAI  193 (438)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            77788999999999988888899999999887      999999999999999999988877544 45689999999888


Q ss_pred             HHHHHHHHHHhcCC
Q 043156          207 AVFLATIIFAAGLP  220 (578)
Q Consensus       207 ~~~~~~~~~~~~~~  220 (578)
                      ..++..+..++..+
T Consensus       194 ~~~i~~~~~~~~~~  207 (438)
T TIGR00712       194 CAIIVALFAFAMMR  207 (438)
T ss_pred             HHHHHHHHHHHhcc
Confidence            76665544444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.88  E-value=8.4e-21  Score=200.39  Aligned_cols=173  Identities=12%  Similarity=0.117  Sum_probs=142.7

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhh
Q 043156           23 GGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV  102 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~  102 (578)
                      +.+|..+++.....+..+......+.++ ++.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++.++.++
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence            3566677677777776666665555555 45689999999999999999999999999999999998 999999999888


Q ss_pred             hccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                      ..++.++.          ...++...+++.|++.|++.+...+....+..|.+++++      |+++.++++.+..+|..
T Consensus        83 ~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  146 (394)
T PRK11652         83 FILGTLVA----------LFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPL  146 (394)
T ss_pred             HHHHHHHH----------HHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHH
Confidence            77665443          334677888999999999998877877788889888765      89999999999999999


Q ss_pred             HHHHHHHHhccccCchhHHHHHHHHHHHHHH
Q 043156          183 ISVTLIVWIQDNKGWDRGFGLSSVAVFLATI  213 (578)
Q Consensus       183 ~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~  213 (578)
                      ++|.+++++.+..|||+.|++.++..++..+
T Consensus       147 ~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        147 LAPLIGGLLTTLFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            9999999998888999999988766554433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.88  E-value=1.8e-20  Score=199.37  Aligned_cols=398  Identities=12%  Similarity=0.032  Sum_probs=235.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-hhhhhhhhhhhccCC
Q 043156           29 LLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGR-FKAVLISGSVEFLPP  107 (578)
Q Consensus        29 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-r~~~~~~~~~~~~~~  107 (578)
                      ..+.+..++...++-...++++.|+++++|++..+.|++.+.+.++..+++++.|+++||+ || |+++.++.++.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~   83 (418)
T TIGR00889         5 AKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLL   83 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Confidence            3456666666667666779999999999999999999999999999999999999999997 66 777777776665443


Q ss_pred             cccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccc--------cCCCCCChHHHhhhhhHHHHHHHHHHH
Q 043156          108 PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGA--------DQFDEKDPIEARQMSSFFNLLFLAVCI  179 (578)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~--------~~~~~~~~~~~~~R~~~~~~~~~~~~l  179 (578)
                      .+.          ....++..+++.|++.+++.+...|...++..        |......      |.+.+|      .+
T Consensus        84 ~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~~r~~G------~l  141 (418)
T TIGR00889        84 FFA----------AQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------PIRVMG------TI  141 (418)
T ss_pred             HHH----------HHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------Ceeeeh------hH
Confidence            332          23456777788888888877666665444321        2122111      555554      47


Q ss_pred             HHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhh
Q 043156          180 GGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELY  259 (578)
Q Consensus       180 G~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (578)
                      |.++||.+++.+.....|. +|++.++..++..+..+ ..++.+++++++ +                     .+   ..
T Consensus       142 G~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~-~---------------------~~---~~  194 (418)
T TIGR00889       142 GFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTA-K---------------------MS---IK  194 (418)
T ss_pred             HHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCcccc-c---------------------cC---HH
Confidence            8889999998884433343 46666655544443322 222211100000 0                     00   00


Q ss_pred             hhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhcc
Q 043156          260 EINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQL  339 (578)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  339 (578)
                      +.                ...++   .                        ...++++-....+..++........ ...
T Consensus       195 ~~----------------~~~~~---~------------------------~~~k~~~~~~~~~~~~~~~~~~~~~-~~~  230 (418)
T TIGR00889       195 VM----------------LGLDA---F------------------------ILFKNKRMAIFFFFSMLLGAPLQIT-NIF  230 (418)
T ss_pred             HH----------------hhhhH---H------------------------HHhcCCCeeeHHHHHHHHHhHHHHH-HHh
Confidence            00                00000   0                        0000010000111111111111111 111


Q ss_pred             chhhhhhhccCCCCCCCce-eeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHH
Q 043156          340 QTFSIQQGLTMDTSVTTSF-HIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIA  418 (578)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~  418 (578)
                      .+.+.... ..+.....++ ....+....+..+..++...+.+++.||+++|           +.+.++.++.++++...
T Consensus       231 ~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~v~~~l~  298 (418)
T TIGR00889       231 GNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----------KVMLLSLVAWALRFGFF  298 (418)
T ss_pred             HHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHH
Confidence            11111111 1011000000 01123444555666777778888888888777           45677777777776555


Q ss_pred             HHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHH-HHHHHHH
Q 043156          419 AIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLW-CSMALGY  497 (578)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~  497 (578)
                      ....                    ....+.+.+++..++.+++++...+....++.+.+|++.||+++|+.+ ....+|+
T Consensus       299 ~~~~--------------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~  358 (418)
T TIGR00889       299 AYGD--------------------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGS  358 (418)
T ss_pred             HHcC--------------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHH
Confidence            4421                    001123445556788899998888998899999999999999999997 6788999


Q ss_pred             HHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Q 043156          498 FFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSV  564 (578)
Q Consensus       498 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~  564 (578)
                      .+|+.+.|.+.+.+.            ..+..+|+..|...+++.+++.+..+++.++..++-+-++
T Consensus       359 ~iGp~l~G~l~~~~g------------~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~~~~~  413 (418)
T TIGR00889       359 LLGYILSGVMVEKMF------------AYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAIKVDD  413 (418)
T ss_pred             HHHHHHHHHHHHHhc------------cccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcc
Confidence            999999998874220            0011247788999999999888888888876644444333

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.88  E-value=9.1e-21  Score=198.67  Aligned_cols=157  Identities=16%  Similarity=0.156  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccc
Q 043156           43 IALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIE  122 (578)
Q Consensus        43 ~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (578)
                      ....+.++.+. +++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.          ..
T Consensus         8 ~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~----------~~   75 (377)
T PRK11102          8 DMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVAC----------AL   75 (377)
T ss_pred             HHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHH----------HH
Confidence            34456676665 67999999999999999999999999999999998 99999999988887665443          33


Q ss_pred             cchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHH
Q 043156          123 GSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFG  202 (578)
Q Consensus       123 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~  202 (578)
                      ..+...+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++|.+++++.+.++|++.|+
T Consensus        76 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  149 (377)
T PRK11102         76 AQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFW  149 (377)
T ss_pred             HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence            4677788899999999999999999999999999876      9999999999999999999999999998889999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 043156          203 LSSVAVFLATIIFAA  217 (578)
Q Consensus       203 i~~~~~~~~~~~~~~  217 (578)
                      +.++..++..+...+
T Consensus       150 ~~~~~~~~~~~~~~~  164 (377)
T PRK11102        150 VLALAAILAAALVFF  164 (377)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            887776655544433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.88  E-value=2.9e-20  Score=197.51  Aligned_cols=149  Identities=13%  Similarity=0.132  Sum_probs=129.6

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHH
Q 043156           52 YFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFV  131 (578)
Q Consensus        52 yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (578)
                      .+.+++|.+..+.++..+.+.+++.++.++.|+++||+ ||||+++.+.+++.++.++.          ....+...+++
T Consensus        41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~----------~~a~~~~~l~~  109 (413)
T PRK15403         41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAAT----------LFTTSMTQFLI  109 (413)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHH----------HHcCCHHHHHH
Confidence            36789999999999999999999999999999999998 99999999998888665553          34578888999


Q ss_pred             HHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHH
Q 043156          132 ALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLA  211 (578)
Q Consensus       132 ~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~  211 (578)
                      +|+++|++.+...+....++.|.+|+++      |++.+++.+...++|..+||.+++++.++.|||+.|++.++..+++
T Consensus       110 ~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~  183 (413)
T PRK15403        110 ARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA  183 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            9999999988766677788999999876      8999999999999999999999999988889999999988876666


Q ss_pred             HHHHHh
Q 043156          212 TIIFAA  217 (578)
Q Consensus       212 ~~~~~~  217 (578)
                      .+..++
T Consensus       184 ~~~~~~  189 (413)
T PRK15403        184 FVGLLL  189 (413)
T ss_pred             HHHHHH
Confidence            554333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.88  E-value=2.2e-20  Score=197.11  Aligned_cols=171  Identities=15%  Similarity=0.091  Sum_probs=140.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPP  107 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~  107 (578)
                      +-+..+..+....++....+.+| .+.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||.+.++.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~   82 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS   82 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence            34445555556666665555565 45678999999999999999999999999999999998 99999999988887665


Q ss_pred             cccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 043156          108 PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTL  187 (578)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l  187 (578)
                      ++.          ...++...+++.|++.|++.+...+...+++.|.+|+++      |+++.++.+...++|..++|.+
T Consensus        83 ~~~----------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i  146 (392)
T PRK10473         83 LLC----------SLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVL  146 (392)
T ss_pred             HHH----------HHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            443          334567778899999999999888888999999999886      9999999999999999999999


Q ss_pred             HHHhccccCchhHHHHHHHHHHHHHHHHH
Q 043156          188 IVWIQDNKGWDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       188 ~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  216 (578)
                      ++++.+..+|++.|++.++..++..+...
T Consensus       147 ~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473        147 GHLIMLKFPWQSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             HHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence            99988888999999998877655554433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.88  E-value=7.5e-22  Score=205.91  Aligned_cols=155  Identities=9%  Similarity=0.008  Sum_probs=132.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchh
Q 043156           47 VNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDA  126 (578)
Q Consensus        47 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (578)
                      .....++.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.          ....+.
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~----------~~~~~~   83 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFF----------GFSTSL   83 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHH----------HHhhhH
Confidence            3344578899999999999999999999999999999999998 99999999998888665553          344678


Q ss_pred             HHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHhccccCchhHHHHHH
Q 043156          127 ALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV-TLIVWIQDNKGWDRGFGLSS  205 (578)
Q Consensus       127 ~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p-~l~~~l~~~~g~~~~f~i~~  205 (578)
                      +.+++.|++.|++.+...+...+++.|++|+++      |++++++.+.+.++|..++| .+++.+.+..+|++.|++.+
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (379)
T TIGR00881        84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPG  157 (379)
T ss_pred             HHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence            889999999999999999999999999999876      99999999999999999999 57777777789999999887


Q ss_pred             HHHHHHHHHHHhc
Q 043156          206 VAVFLATIIFAAG  218 (578)
Q Consensus       206 ~~~~~~~~~~~~~  218 (578)
                      ++.++..+..+..
T Consensus       158 ~~~~~~~~~~~~~  170 (379)
T TIGR00881       158 IIAIIVSLICFLL  170 (379)
T ss_pred             HHHHHHHHHHhee
Confidence            7665544444433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.87  E-value=2.8e-20  Score=195.66  Aligned_cols=364  Identities=10%  Similarity=0.002  Sum_probs=233.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhh----hhhhhhhhh
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFK----AVLISGSVE  103 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~----~~~~~~~~~  103 (578)
                      .+.+.+..+....++....+++|.|+ +++|+|.+++|++.+.+.+...++.++.|.++||+ ||++    .+.++..+.
T Consensus         6 ~~~l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~   83 (382)
T TIGR00902         6 FRWLALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIF   83 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH
Confidence            34455666666666666778999998 57899999999999999999999999999999998 9843    333333222


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      .+  .+        +  ...++++.+++.|++++.+.+...|...++..|. + +      +|++.++......++|.++
T Consensus        84 ~~--~~--------~--~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~-~------~~~~~~g~~~~~~slG~~~  143 (382)
T TIGR00902        84 AA--AF--------S--AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW-Q-K------QFGLDYGKVRLIGSAAFII  143 (382)
T ss_pred             HH--HH--------H--HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH-H-H------HcCCCccHHHHHHHHHHHH
Confidence            21  01        0  2346788888999999998888888877776543 2 3      3899999999999999999


Q ss_pred             HHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhch
Q 043156          184 SVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINM  263 (578)
Q Consensus       184 ~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (578)
                      +|.+++++.+++|||..|++......+..+ .+...++.   +|++ +.                    ++.    +   
T Consensus       144 g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~---~~~~-~~--------------------~~~----~---  191 (382)
T TIGR00902       144 GSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTI---PPKD-AI--------------------PED----E---  191 (382)
T ss_pred             HHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCC---CCCc-cc--------------------ccc----c---
Confidence            999999999999999999887654333222 22222211   1111 00                    000    0   


Q ss_pred             hhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhh
Q 043156          264 DKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFS  343 (578)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (578)
                                    .                        ..++.. .+-.++ |+.....   .....++.....+.++.
T Consensus       192 --------------~------------------------~~~~~~-~~~l~~-~~~~~~l---~~~~l~~~~~~~~~~~~  228 (382)
T TIGR00902       192 --------------S------------------------QGDSAF-IALLKN-PMNLRFL---AAVCLIQGAHAAYYGFS  228 (382)
T ss_pred             --------------c------------------------ccchhH-HHHHcC-hHHHHHH---HHHHHHHHHHHHHHHHH
Confidence                          0                        000000 000111 2221111   11111222222222221


Q ss_pred             hhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHH
Q 043156          344 IQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEV  423 (578)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~  423 (578)
                      .....  +....   ....+.......+..++..++.+++.+|+..|           +.+.+|.++..+..+.+++.+ 
T Consensus       229 ~~~l~--~~g~s---~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~-----------~~l~~~~~~~~~~~~~~~~~~-  291 (382)
T TIGR00902       229 AIYWQ--AAGIS---ASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR-----------DLLLISAIACVGRWAIIGAIE-  291 (382)
T ss_pred             HHHHH--HCCCC---HhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH-----------HHHHHHHHHHHHHHHHHHhHh-
Confidence            11111  11111   11123344456666666667777776655555           567788888888887776644 


Q ss_pred             HHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHH-HHHHHHHHHHHH
Q 043156          424 IRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLW-CSMALGYFFSTI  502 (578)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~~lg~~  502 (578)
                                             +++.++..-++.++..++..+....++.+. |++.|++++++++ +...+|..+++.
T Consensus       292 -----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~  347 (382)
T TIGR00902       292 -----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTA  347 (382)
T ss_pred             -----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   556666667999999999999999999988 9999999999986 567899999999


Q ss_pred             HHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 043156          503 LVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSV  548 (578)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~  548 (578)
                      +.|.+.+..                  ++ ..|+..+++++++.++
T Consensus       348 ~~G~l~~~~------------------g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       348 FAGFIYPTL------------------GA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHhc------------------cH-HHHHHHHHHHHHHHHH
Confidence            999887311                  12 4577777777766544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.87  E-value=1.8e-20  Score=204.63  Aligned_cols=401  Identities=14%  Similarity=0.095  Sum_probs=244.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhcc
Q 043156           62 AEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTA  141 (578)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g  141 (578)
                      .+.+++.+...++..++.++.|+++|++ |||++++++.+.+.++.++.          +.+.+...++++|++.|+|.|
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~----------~~a~~~~~l~~GR~l~G~g~G  157 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIII----------ALAPSWYQLIVGRILTGLGVG  157 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH----------HHhhhHHHHHHHHHHhccchh
Confidence            3558999999999999999999999998 99999999999999888776          556799999999999999999


Q ss_pred             ccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-cCchhHHHHHHHHHHHHHHHHHhcCC
Q 043156          142 GIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDN-KGWDRGFGLSSVAVFLATIIFAAGLP  220 (578)
Q Consensus       142 ~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~-~g~~~~f~i~~~~~~~~~~~~~~~~~  220 (578)
                      ......+.+++|..|++.      |+...+.++...++|..++..++....+. ++||..+.+..+..++..+..++ .+
T Consensus       158 ~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~-~p  230 (513)
T KOG0254|consen  158 GASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLF-LP  230 (513)
T ss_pred             hhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHh-CC
Confidence            999999999999999987      99999999999999999995544444332 48999998888877666555332 22


Q ss_pred             CceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCC---CCccchhhHhhhhccCccccc
Q 043156          221 LYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPH---RDIFRFLDKAAIQKTSTENLE  297 (578)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  297 (578)
                                                      |+|+++.++++.++++.....+..   .+.....+..+.+....  .+
T Consensus       231 --------------------------------esp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~--~~  276 (513)
T KOG0254|consen  231 --------------------------------ESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVE--AE  276 (513)
T ss_pred             --------------------------------CChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh--hh
Confidence                                            222222222222222221111111   00000000000000000  00


Q ss_pred             cccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccch-hhhhhhccCCCCCCCceeeCCCcccCchhHHHHHH
Q 043156          298 ITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQT-FSIQQGLTMDTSVTTSFHIPPASLPILPILFMILA  376 (578)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~  376 (578)
                      ..+....|+....  ...+|+....+.+..++.........+++ .+.+..         ++..+......+..+..++.
T Consensus       277 ~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~---------g~~~~~~~~~~~~~~v~~~~  345 (513)
T KOG0254|consen  277 VAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA---------GLKSDTFLASIILGVVNFLG  345 (513)
T ss_pred             cccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc---------CCCCchHHHHHHHHHHHHHH
Confidence            0000011111111  11233333222222222221111111111 111111         11111112222233444455


Q ss_pred             HHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHH
Q 043156          377 VPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFF  456 (578)
Q Consensus       377 ~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  456 (578)
                      ..+...++||++||           ..+..|...+.+++++++.......+..   +        ......+..++...+
T Consensus       346 t~~~~~lvd~~gRr-----------~lll~s~~~m~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~  403 (513)
T KOG0254|consen  346 TLVATYLVDRFGRR-----------KLLLFGAAGMSICLVILAVVGVFALYYP---N--------SSKGAGWLAIVFLCL  403 (513)
T ss_pred             HHHHHHHHHHhccH-----------HHHHHhHHHHHHHHHHHHHHHHHhccCC---C--------cccchhHHHHHHHHH
Confidence            55556788888887           5788899999999988877653210000   0        011223334444444


Q ss_pred             HHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHH
Q 043156          457 IFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFW  536 (578)
Q Consensus       457 l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  536 (578)
                      ........+.|..+.+..|++|.+.|+.+.++....+.+.+.+-....+......       +           ....|.
T Consensus       404 ~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~-------~-----------~~~~f~  465 (513)
T KOG0254|consen  404 FIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL-------G-----------IGGTFG  465 (513)
T ss_pred             HHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------c-----------ccchHH
Confidence            4555555678888899999999999999999999999988888776665554210       0           113566


Q ss_pred             HHHHHHHHHHH-HHhhhccccccccccccC
Q 043156          537 LLSALSFINFS-VYLFMSSRYNYRPQTSVG  565 (578)
Q Consensus       537 ~~~~~~~i~~i-~~~~~~~~~~~~~~~~~~  565 (578)
                      .++.++.+..+ +.+++.+++++++.|+..
T Consensus       466 ~f~~~~~~~~~~fv~~~~pETkg~sleei~  495 (513)
T KOG0254|consen  466 YFGGICLLSLIIFVFFFVPETKGLTLEEIN  495 (513)
T ss_pred             HHHHHHHHHHHHHheEEcccCCCCcHHHHH
Confidence            77777777777 788889999998877543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.87  E-value=1.7e-20  Score=198.20  Aligned_cols=390  Identities=10%  Similarity=0.016  Sum_probs=237.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |..|.+....++...++..+.++++.|+++++|.|..+.+++.+.+.++..++.++.|+++||+ ||||.++.+.+..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4567777788888888888899999999999999999999999999999999999999999998 999999887665542


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      +......  ...............++.+++.+++.+...|....+..|..+  +      ++..++..+...++|..++|
T Consensus        81 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~~~~~g~~~g~  150 (396)
T TIGR00882        81 LFAPFFI--YVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARMFGCVGWALCA  150 (396)
T ss_pred             HHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhhhcccHHHHHH
Confidence            2111000  000000001123344566777888887777777666655322  1      45567788888899999999


Q ss_pred             HHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhh
Q 043156          186 TLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDK  265 (578)
Q Consensus       186 ~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (578)
                      .+++.+.+ .+|+++|++.+++.++..+..+...++.    |++ +...               ...++     +     
T Consensus       151 ~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~---------------~~~~~-----~-----  199 (396)
T TIGR00882       151 SIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSS-ATVA---------------NALGA-----N-----  199 (396)
T ss_pred             HHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chh-hhhh---------------ccccc-----c-----
Confidence            99998865 5999999998877666554443322211    111 0000               00000     0     


Q ss_pred             hhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhh-hccchhhh
Q 043156          266 EAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCL-AQLQTFSI  344 (578)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~  344 (578)
                                + +..+.-+..                        +..++ |.....+...+.....+... .+.+.+..
T Consensus       200 ----------~-~~~~~~~~~------------------------~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~y~~  243 (396)
T TIGR00882       200 ----------A-SAFSLKLAL------------------------ELFRQ-RKFWMFVLYVVGVACVYDVFDQQFANFFT  243 (396)
T ss_pred             ----------c-CCCCHHHHH------------------------HHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      0 000000000                        00111 11111111212211112222 22222222


Q ss_pred             hhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHH
Q 043156          345 QQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVI  424 (578)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~  424 (578)
                      ....  +...+   ....+.+.+...+...+..+..+++.||+++|           +.+.++.++.++++.......  
T Consensus       244 ~~~~--~~~~~---~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~-----------~~l~~~~~l~~l~~~~~~~~~--  305 (396)
T TIGR00882       244 SFFA--TPQQG---TRVFGYVTTMGELLNALIMFCAPLIINRIGAK-----------NALLIAGTIMSVRIIGSSFAT--  305 (396)
T ss_pred             Hhcc--ccccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHHHHhcC--
Confidence            2111  11110   00112344445556666677788888777766           345667777766665544321  


Q ss_pred             HHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHH-HHHHHHHHHHHHHHH
Q 043156          425 RKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCF-LWCSMALGYFFSTIL  503 (578)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig~~lg~~~  503 (578)
                                            +.+++.+..++.+++..........+..+..|++.+++..+. .+....+|+.+++.+
T Consensus       306 ----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l  363 (396)
T TIGR00882       306 ----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTL  363 (396)
T ss_pred             ----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence                                  455556667777887776666667777788899999887766 678899999999999


Q ss_pred             HHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 043156          504 VNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLF  551 (578)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  551 (578)
                      .+.+.+.                  .+|+..|.+.+++.++..++..+
T Consensus       364 ~G~l~~~------------------~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       364 AGNMYDS------------------IGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHh------------------cccHHHHHHHHHHHHHHHHHHHH
Confidence            9887631                  24667888888888877766554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=9e-21  Score=199.34  Aligned_cols=402  Identities=14%  Similarity=0.079  Sum_probs=253.7

Q ss_pred             hcC--CCHHHH----HHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHH
Q 043156           56 VLH--LDLAEA----ANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALL  129 (578)
Q Consensus        56 ~lg--~s~~~~----~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (578)
                      .+|  .+.++.    +.+++++.+++.++..++|+++||+ |||..+.++.++..++.++..       ......+..++
T Consensus        48 r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~-------~s~~~~~~e~l  119 (485)
T KOG0569|consen   48 RYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMG-------LSKSAPSFEML  119 (485)
T ss_pred             hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHH
Confidence            445  555443    5566778999999999999999998 999999999888886655541       11234788899


Q ss_pred             HHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHH-H-HhccccCchhHHHHHHHH
Q 043156          130 FVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLI-V-WIQDNKGWDRGFGLSSVA  207 (578)
Q Consensus       130 ~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~-~-~l~~~~g~~~~f~i~~~~  207 (578)
                      +++|++.|+..|......+.++.|..|++.      ||..-.+...+.++|..++..++ . .+.+...|++.+.+..+.
T Consensus       120 i~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~  193 (485)
T KOG0569|consen  120 ILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIP  193 (485)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHH
Confidence            999999999999999999999999999997      99999999999999999996655 2 334555699999988888


Q ss_pred             HHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhh-hchhhhhhhhcccCCCCCc-cchhhH
Q 043156          208 VFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYE-INMDKEAAIETEFLPHRDI-FRFLDK  285 (578)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~  285 (578)
                      .++.++...+                                 .||+|+++.. +++.++++...+.++..++ .+..+.
T Consensus       194 ~~~~l~~l~~---------------------------------~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~  240 (485)
T KOG0569|consen  194 ALLQLALLPF---------------------------------LPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEE  240 (485)
T ss_pred             HHHHHHHHhc---------------------------------CCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHH
Confidence            7777665543                                 3556666655 4444444444433332211 111111


Q ss_pred             --hhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhh-hccchhhhhhhccCCCCCCCceeeC-
Q 043156          286 --AAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCL-AQLQTFSIQQGLTMDTSVTTSFHIP-  361 (578)
Q Consensus       286 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-  361 (578)
                        ...+.++..    .+....+....++ ...|+.+...+.+...+..-.... .++.+.+...+         |+... 
T Consensus       241 ~~~e~~~~~~~----~~~~~sl~~~~~~-~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a---------G~~~~~  306 (485)
T KOG0569|consen  241 MLREIEEEELE----KKKQISLRQLLKN-PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA---------GFTPEE  306 (485)
T ss_pred             HHHHHHHhccc----cccCCcHHHHhcC-cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc---------CCCHHH
Confidence              111111000    0011111111111 011222222211111111111111 11111222211         11111 


Q ss_pred             CCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCC
Q 043156          362 PASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVV  441 (578)
Q Consensus       362 ~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (578)
                      ....+....+..++...+...++||++||           ..++++..++.+..+++..........             
T Consensus       307 a~~an~~~g~v~~~~t~~~~~lid~~gRR-----------pLll~~~~~~~~~~~~~~~~~~l~~~~-------------  362 (485)
T KOG0569|consen  307 AQYANLGIGIVNLLSTLVSPFLIDRLGRR-----------PLLLISLSLMAVALLLMSIALFLSNSF-------------  362 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence            22333444566666777778888888888           577778888887777776665332111             


Q ss_pred             CCccchhhHHHHHHHHHHH-HHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCC
Q 043156          442 QPLPISTFWLSIQFFIFGI-ADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGW  520 (578)
Q Consensus       442 ~~~~~~~~~~i~~~~l~g~-g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~  520 (578)
                        .++-.+..+...+++.+ ......|..+-+..|.+|++.|+.++++....+++.+++-....+.+.....        
T Consensus       363 --~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g--------  432 (485)
T KOG0569|consen  363 --GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG--------  432 (485)
T ss_pred             --hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence              01111222333333333 4445689999999999999999999999999999999999988887764221        


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q 043156          521 LAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTS  563 (578)
Q Consensus       521 ~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~  563 (578)
                             .    ++|..+.+.++++.+..+...+++|+|+-++
T Consensus       433 -------~----~~filF~i~~~~~~i~~~~~lPETkgr~~~e  464 (485)
T KOG0569|consen  433 -------P----YVFILFVIPLAIFLIYLYRYLPETKGRTPYE  464 (485)
T ss_pred             -------c----hhhHHHHHHHHHHHHHHHHhCcccCCCCHHH
Confidence                   1    5788899999999999999999999886544

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.86  E-value=3.3e-20  Score=187.50  Aligned_cols=393  Identities=15%  Similarity=0.077  Sum_probs=266.2

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      +.++|..++ ....+..++.-+.+.+.+.+++++++|+|..|.+++.++..+.+.+..++-|.+.||+ |.|++..++.+
T Consensus        10 ~~~~~~L~~-S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~   87 (417)
T COG2223          10 RIARRNLWL-STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML   87 (417)
T ss_pred             cchhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence            445666664 4455566666677888888999999999999999999999999999999999999998 99999999999


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      +..++.+.+.       .....++.+.+++.+++.|++.|. .....++++.+||+++      ++.++|++. ..|+|.
T Consensus        88 l~~IP~~~~~-------~a~~~~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~  152 (417)
T COG2223          88 LLLIPCLGLA-------FAVTYPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEK------QGLALGIAG-AGNLGV  152 (417)
T ss_pred             HHHHHHHHHH-------HHccCCchHHHHHHHHHHhcccce-ehcccccccccCChhh------hhHHHHHhc-cccccH
Confidence            9887765541       112223446888888998988654 5667788999999987      899999999 999999


Q ss_pred             HHHHHHHHHhccccC---chhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhh
Q 043156          182 AISVTLIVWIQDNKG---WDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMEL  258 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g---~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (578)
                      .+...+++++....+   |+..-.+..+..++..+..++..++.+...+.. ++.                 .+      
T Consensus       153 av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~-~~~-----------------~~------  208 (417)
T COG2223         153 AVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV-KPQ-----------------LP------  208 (417)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc-ccc-----------------ch------
Confidence            999999999988888   999888888887776666666554332211111 000                 00      


Q ss_pred             hhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhc
Q 043156          259 YEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQ  338 (578)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~  338 (578)
                                            ..+                           +.+..+|+.-....+......-+..+..
T Consensus       209 ----------------------~~~---------------------------~~v~~~~~~W~lsllY~~tFG~Fvgfs~  239 (417)
T COG2223         209 ----------------------AQL---------------------------KAVFSNKDTWLLSLLYFATFGGFVGFSA  239 (417)
T ss_pred             ----------------------hHH---------------------------HHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence                                  000                           0011111111222222333333333333


Q ss_pred             cchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHH
Q 043156          339 LQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIA  418 (578)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~  418 (578)
                      ..+.+.......+       ....+.+....++...+.-|+.+++.||++.+           +.+.+.+..++++..+.
T Consensus       240 ~l~~~~~~~fg~~-------~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-----------rv~~~~f~~~~~~~~~l  301 (417)
T COG2223         240 YLPMYLVTQFGLS-------PVTAGLIAFLFPLIGALARPLGGWLSDRIGGR-----------RVTLAVFVGMALAAALL  301 (417)
T ss_pred             HHHHHHHHhcCCC-------hhhHHHHHHHHHHHHHHHHhccchhhhhccch-----------hHHHHHHHHHHHHHHHH
Confidence            3332222211111       22344566667888999999999999999887           45666777777777666


Q ss_pred             HHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHH
Q 043156          419 AIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYF  498 (578)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~  498 (578)
                      ....+.                 .....+.+..+..++..++..++-+-..+.++..+.|+ +.|.+.|+.....++|++
T Consensus       302 ~~~~~~-----------------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf  363 (417)
T COG2223         302 SLFLTG-----------------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGF  363 (417)
T ss_pred             Hccccc-----------------cccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhcccccc
Confidence            654310                 00123344444444444554444455555666666654 678889999999999988


Q ss_pred             HHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 043156          499 FSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYN  557 (578)
Q Consensus       499 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~  557 (578)
                      .-|...+...+.|                 +.++.+|+.+..+.+++.+..+..+.|.+
T Consensus       364 ~lp~~~g~~~~~t-----------------g~~~~~f~~~~~~~~~a~v~~~~~y~r~~  405 (417)
T COG2223         364 FLPLAFGVSLDLT-----------------GSYTGAFMLLLAFYLVALVLTWALYARRR  405 (417)
T ss_pred             chhHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8888877766433                 34668899999999999999988877754

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.86  E-value=6.4e-20  Score=192.96  Aligned_cols=336  Identities=10%  Similarity=0.012  Sum_probs=211.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh----hhhhhhhhhhccCCcc
Q 043156           34 AFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRF----KAVLISGSVEFLPPPC  109 (578)
Q Consensus        34 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr----~~~~~~~~~~~~~~~~  109 (578)
                      ..++...++....++++.|+ +++|.|..++|++.+.+.+...++.++.|.++||+ |||    +.+.++..+..+  ..
T Consensus        12 ~~~~~~~~~g~~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~--~~   87 (382)
T PRK11128         12 SYFGYFFAYGVFLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFAV--AF   87 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHHH--HH
Confidence            34455556666778899998 56899999999999999999999999999999998 983    443333322221  11


Q ss_pred             cccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043156          110 NVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIV  189 (578)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~  189 (578)
                      .          ...++.+.+++.|++.+++.+...|...++..++ . ++      |++.++..+...++|..+||.+++
T Consensus        88 ~----------~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~-~~------~~~a~~~~~~~~~lg~~igp~lgg  149 (382)
T PRK11128         88 W----------FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW-Q-KQ------IGLDYGKVRLWGSIAFVIGSALTG  149 (382)
T ss_pred             H----------HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH-H-hh------ccCCcchHHHHHHHHHHHHHHHHH
Confidence            1          2246678888899999999998888877777775 2 22      788888888899999999999999


Q ss_pred             HhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhh
Q 043156          190 WIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAI  269 (578)
Q Consensus       190 ~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (578)
                      ++.+++|||..|++.++..++..+.. +..++   ++|++ +.                    +..    .         
T Consensus       150 ~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~---~~~~~-~~--------------------~~~----~---------  191 (382)
T PRK11128        150 KLVSWFGEQAILWILTAGVASMLLGQ-LLRPT---IMPQG-ES--------------------RQQ----E---------  191 (382)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHH-HccCC---CCCcc-cc--------------------ccc----c---------
Confidence            99999999999988776544443322 22221   11111 00                    000    0         


Q ss_pred             hcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHH-HHHHHHHHHHhhhccchhhhhhhc
Q 043156          270 ETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIP-IFCCTIVMTLCLAQLQTFSIQQGL  348 (578)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  348 (578)
                            +...                       ..++     .....|+...... .++....+...+... +.+..+ .
T Consensus       192 ------~~~~-----------------------~~~~-----~i~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~  235 (382)
T PRK11128        192 ------SAGW-----------------------PAWK-----ALLKEPTVWRFLLCVSLLQGSHAAYYGFS-AIYWQA-A  235 (382)
T ss_pred             ------cccc-----------------------chHH-----HHHcChhHHHHHHHHHHHHHHhHhHHHHH-HHHHHH-C
Confidence                  0000                       0000     0101112211111 111111111111111 112111 1


Q ss_pred             cCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhh
Q 043156          349 TMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDV  428 (578)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~  428 (578)
                      +.+.       ...+.+...+.+..++...+.+++.||+.+|           +.+.++.++.+++++.+...+      
T Consensus       236 g~s~-------~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~l~~~~~~~~~~~~~~~~~~------  291 (382)
T PRK11128        236 GYSA-------STIGYLWSLGVVAEVLIFAFSNRLFRRWSAR-----------DLLLLSAICGVVRWGLMGSTT------  291 (382)
T ss_pred             CCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHHHHHHHHHHHHHhhh------
Confidence            1111       1123344455566666667777777665555           456677777777766655433      


Q ss_pred             hhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 043156          429 ARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLW-CSMALGYFFSTILVNIV  507 (578)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~~lg~~~~~~~  507 (578)
                                        +.+++++..++.+++++...+....+..+. |++.++++++..+ ..+.+|..+|+.+.|.+
T Consensus       292 ------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l  352 (382)
T PRK11128        292 ------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFL  352 (382)
T ss_pred             ------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              555666677888999999899998988887 5566789999886 55678889999999988


Q ss_pred             h
Q 043156          508 N  508 (578)
Q Consensus       508 ~  508 (578)
                      .
T Consensus       353 ~  353 (382)
T PRK11128        353 Y  353 (382)
T ss_pred             H
Confidence            7

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.86  E-value=1e-20  Score=197.28  Aligned_cols=166  Identities=17%  Similarity=0.152  Sum_probs=134.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      ..+..++..+......+...+.+|.++++++|+|..+.+++.+.+.+++.++.++.|+++||+ ||||++.++.++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            456667777777777777778888789999999999999999999999999999999999998 9999999999888866


Q ss_pred             CcccccCCCCCccccccc-hhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGS-DAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      .++.          .... +.+.+++.|+++|++.+.. +...++++|++|+++      |++..+++....++|..+++
T Consensus        81 ~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~  143 (366)
T TIGR00886        81 CLWA----------GLAVQSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQ  143 (366)
T ss_pred             HHHH----------HHHhhhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHH
Confidence            5553          3345 7888899999999996654 556789999999886      99999999988888888888


Q ss_pred             HHHHHhcc----------ccCchhHHH-HHHHHHHH
Q 043156          186 TLIVWIQD----------NKGWDRGFG-LSSVAVFL  210 (578)
Q Consensus       186 ~l~~~l~~----------~~g~~~~f~-i~~~~~~~  210 (578)
                      .+++.+..          +.+||+.|+ +.++...+
T Consensus       144 ~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  179 (366)
T TIGR00886       144 FVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLL  179 (366)
T ss_pred             HHHHHHHHHHHhcccccccccccchhHHHHHHHHHH
Confidence            77766543          348999994 43444333

>PRK10133 L-fucose transporter; Provisional

Probab=99.86  E-value=9.8e-20  Score=194.74  Aligned_cols=156  Identities=17%  Similarity=0.114  Sum_probs=126.5

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      +++...++.+....+...+........+| .+++++|.|..+.++..+.+.+++.++.++.|+++||+ ||||++.++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~   99 (438)
T PRK10133         22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            44555666666666666666665555555 45999999999999999999999999999999999998 99999999999


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      +++++.++.       ......+++..++++|+++|+|.|...++.++++.|+.|+++      |...+++......+|.
T Consensus       100 ~~~~~~~l~-------~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~  166 (438)
T PRK10133        100 LYALGAALF-------WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGA  166 (438)
T ss_pred             HHHHHHHHH-------HHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHH
Confidence            999776442       001235778899999999999999999999999999765553      6667889999999999


Q ss_pred             HHHHHHHHHhc
Q 043156          182 AISVTLIVWIQ  192 (578)
Q Consensus       182 ~~~p~l~~~l~  192 (578)
                      .++|.+++.+.
T Consensus       167 ~~g~~~g~~l~  177 (438)
T PRK10133        167 IIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHH
Confidence            99998877543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.86  E-value=2.5e-20  Score=222.75  Aligned_cols=349  Identities=14%  Similarity=0.019  Sum_probs=207.2

Q ss_pred             HHHhcCCCH-HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhh--hccCCcccccCCCCCccccccchhHHH
Q 043156           53 FNGVLHLDL-AEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV--EFLPPPCNVFDPTAGCKKIEGSDAALL  129 (578)
Q Consensus        53 l~~~lg~s~-~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (578)
                      +....+.+. ...++..+++.+...++.+++|+++||+ |||+++......  ......+.       +  ....+++.+
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~-------~--~~~~s~~~l  111 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIY-------G--FHLNSVPLL  111 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHH-------H--HHHhhHHHH
Confidence            333444433 4467888889999999999999999998 999976432211  11111010       0  122678899


Q ss_pred             HHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHH
Q 043156          130 FVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVF  209 (578)
Q Consensus       130 ~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~  209 (578)
                      ++.|+++|++.+...|+..+++.|++|+++      |++++++.+.+.++|.++||.++|++....+|++.|.+.++..+
T Consensus       112 ~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~  185 (1140)
T PRK06814        112 FAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAV  185 (1140)
T ss_pred             HHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            999999999999999999999999999987      99999999999999999999999999998999999855444444


Q ss_pred             HHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhh
Q 043156          210 LATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQ  289 (578)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (578)
                      +++++.+...+ .+.+++.. ..                   ..+.   ..                       +..   
T Consensus       186 ~~~~~~~~~~~-~~~~~~~~-~~-------------------~~~~---~~-----------------------~~~---  215 (1140)
T PRK06814        186 LGWLASLFIPK-TGNAAPDL-KI-------------------DRNI---IR-----------------------STI---  215 (1140)
T ss_pred             HHHHHHhhCCC-CCCCCCCC-ee-------------------ccch---HH-----------------------HHH---
Confidence            44443333222 11111100 00                   0000   00                       000   


Q ss_pred             ccCccccccccCCCCCccccchhhhhHHHHHhHH-HHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccCc
Q 043156          290 KTSTENLEITEAPNPWKLCRVTQVENAKIILGMI-PIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPIL  368 (578)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (578)
                                   ..++     .....+.+.... ..+.....+.....+.+.+. .+..+.+       ....+.+.+.
T Consensus       216 -------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~g~~-------~~~~g~~~~~  269 (1140)
T PRK06814        216 -------------TLLK-----YAKADKRIWLAILGISWFWLVGAVVLSQLPLLA-KETLGGD-------ENVATLFLAV  269 (1140)
T ss_pred             -------------HHHH-----HHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHcCCc-------hHHHHHHHHH
Confidence                         0000     000011111111 11111122222222222222 2211111       1123455666


Q ss_pred             hhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchh
Q 043156          369 PILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPIST  448 (578)
Q Consensus       369 ~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (578)
                      ..++.+++..+.+++.++..++           +.+..+.++.+++.+.+.+..... ...  ...+-.. ..-....+.
T Consensus       270 ~~~g~~ig~~~~g~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~-~~~--~~~~~~~-~~~~~~~~~  334 (1140)
T PRK06814        270 FSVGVAVGSFLASKLSEGRITL-----------LYVPIGALLMGLFGLDLAFASSSV-PAE--PAQLKSI-LVFLSKRHG  334 (1140)
T ss_pred             HHHHHHHHHHHHHHHhCCceee-----------eeehHHHHHHHHHHHHHHhccccc-ccc--cccccch-hhhhccccc
Confidence            7788888888888886544433           233444444444444333310000 000  0000000 000001244


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043156          449 FWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVN  508 (578)
Q Consensus       449 ~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~  508 (578)
                      +.+++..++.|++.++..++..+++.+.+|++.||+++|+.++...++..+++.+.+.+.
T Consensus       335 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        335 WRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677888899999999999999999999999999999999999999999999888775

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.86  E-value=6.4e-20  Score=219.52  Aligned_cols=362  Identities=14%  Similarity=0.066  Sum_probs=221.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDL--AEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE  103 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~  103 (578)
                      |....+++..++..+...+....+..++..+++.+.  ...+++.+.+.++..++.+++|+++||+ |||++++++.++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~   87 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE   87 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence            445555566666666655555555566666666654  3468899999999999999999999998 9999999887665


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      .+..++.       .......+++.+++.|+++|++.+...|+..++++|++|+++      |+++++++..+.++|.++
T Consensus        88 ~~~~~~~-------~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~l  154 (1146)
T PRK08633         88 VGLTLLI-------VLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILA  154 (1146)
T ss_pred             HHHHHHH-------HHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHH
Confidence            5332221       001223567889999999999999999999999999999987      999999999999999999


Q ss_pred             HHHHHHHhccc--------c-CchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCC
Q 043156          184 SVTLIVWIQDN--------K-GWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPED  254 (578)
Q Consensus       184 ~p~l~~~l~~~--------~-g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (578)
                      ||.+++++.+.        + +|.+.+.+.++...+..++..+..++.+...+.. .                     +.
T Consensus       155 g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------------~~  212 (1146)
T PRK08633        155 GTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEV-F---------------------DK  212 (1146)
T ss_pred             HHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccc-c---------------------cc
Confidence            99999998765        2 3444444433332222222222222211110000 0                     00


Q ss_pred             chhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHH-HHHHHHHHHH
Q 043156          255 PMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMI-PIFCCTIVMT  333 (578)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~  333 (578)
                      .    .               .....+..+                   .++     .....+.+...+ ...+.....+
T Consensus       213 ~----~---------------~~~~~~~~~-------------------~~~-----~l~~~~~~~~~~~~~~~~~~~~~  249 (1146)
T PRK08633        213 K----K---------------YLFPKLLWR-------------------NLK-----LLRSDRVLWLAIIGLSYFWFISQ  249 (1146)
T ss_pred             c----c---------------cccHHHHHH-------------------HHH-----HHhcCcHHHHHHHHHHHHHHHHH
Confidence            0    0               000000000                   000     000011111111 1111111111


Q ss_pred             HhhhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHH
Q 043156          334 LCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCI  413 (578)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~  413 (578)
                      .....++.++ ....+.+..      ...+.+.....++.++...+.+++.+|..++           +.+.++.+++++
T Consensus       250 ~~~~~~~~~~-~~~~g~s~~------~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~-----------~~~~~~~~~~~~  311 (1146)
T PRK08633        250 LAQANFPAYA-KEVLGLDNT------FQVQYLLAASAIGIGIGSLLAGRLSGRHIEL-----------GLVPLGALGLAL  311 (1146)
T ss_pred             HHHHhhHHHH-HHHhCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-----------cchhHHHHHHHH
Confidence            1111112222 211111111      0123455556666777777888877665544           345566666666


Q ss_pred             HHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHH
Q 043156          414 SMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSM  493 (578)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~  493 (578)
                      +++++.+..                        +.+.+++..++.+++.++..+..++++.+.+|++.||+++|+.++..
T Consensus       312 ~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~  367 (1146)
T PRK08633        312 SLFLLPTAP------------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQ  367 (1146)
T ss_pred             HHHHHHHhh------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHH
Confidence            666555432                        45566667788889988888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 043156          494 ALGYFFSTILVNIVN  508 (578)
Q Consensus       494 ~ig~~lg~~~~~~~~  508 (578)
                      .++..+++.+.+.+.
T Consensus       368 ~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        368 NVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999988877766553

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.85  E-value=3.8e-21  Score=195.60  Aligned_cols=180  Identities=13%  Similarity=0.131  Sum_probs=160.1

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      +...+.+.++++++.+++..-|.+-. .-.-.++.+|++.+..|.+.+.+.+...++.|+.|+++||+ .||+++.+|..
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~  106 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF  106 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence            34467788999999999999998766 44567889999999999999999999999999999999999 99999999999


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      +|.++.+..          .+...++++.+.|.+.|+|.+.+.|.++++++|.||..+      |++.++++|++.++|.
T Consensus       107 iW~~Av~~~----------~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGs  170 (493)
T KOG1330|consen  107 IWTLAVFAS----------GFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGS  170 (493)
T ss_pred             HHHHHHHHH----------HHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhccccc
Confidence            999776654          556789999999999999999999999999999999887      9999999999999999


Q ss_pred             HHHHHHHHHhccccC-chhHHHHHHHHHHHHHHHHHhcC
Q 043156          182 AISVTLIVWIQDNKG-WDRGFGLSSVAVFLATIIFAAGL  219 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~  219 (578)
                      ++|.+++..+.+..+ |||.|.+.+++.++..++.+++.
T Consensus       171 glG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~  209 (493)
T KOG1330|consen  171 GLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV  209 (493)
T ss_pred             ceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence            999999999988776 99999999998776665555543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.85  E-value=1.2e-19  Score=194.03  Aligned_cols=355  Identities=12%  Similarity=0.070  Sum_probs=218.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhh-hhhhhhhhhccCCcc
Q 043156           34 AFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAF---IGRFK-AVLISGSVEFLPPPC  109 (578)
Q Consensus        34 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~-~~~~~~~~~~~~~~~  109 (578)
                      ..+..+..+..+.++++.|+++++|++..++|++.+...+...+..|+.|+++||.   +|||| .++++.+..+++.++
T Consensus         7 g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~   86 (437)
T TIGR00792         7 GDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL   86 (437)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH
Confidence            34555666677778899999999999999999999999999999999999999982   28866 455666655544333


Q ss_pred             cccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043156          110 NVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIV  189 (578)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~  189 (578)
                      +...|.    .........+++.+++.+++.+...+...++..|..++++     +|++..++.+.+.++|..+++.+.+
T Consensus        87 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~g~~l~~~~~~  157 (437)
T TIGR00792        87 LFTTPD----FSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATLGGLLVAVIVL  157 (437)
T ss_pred             HHhCCC----CCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            210000    0001224455667777888888888888889999886433     3999999988888888877766655


Q ss_pred             Hhc-------cccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhc
Q 043156          190 WIQ-------DNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEIN  262 (578)
Q Consensus       190 ~l~-------~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (578)
                      .+.       +..+|++.+.+.+++.++..+..+...++.+++.+..                       +.+       
T Consensus       158 ~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~-----------------------~~~-------  207 (437)
T TIGR00792       158 PLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN-----------------------IEK-------  207 (437)
T ss_pred             HHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc-----------------------ccc-------
Confidence            443       2468999998888776655544433332211000000                       000       


Q ss_pred             hhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchh
Q 043156          263 MDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTF  342 (578)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~  342 (578)
                                      .....+.                   ++     .....|.+...+.........+........+
T Consensus       208 ----------------~~~~~~~-------------------~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (437)
T TIGR00792       208 ----------------KLSLKQI-------------------FK-----ALFKNDQLLILCLAYLFYNLAFNIKNGVQVY  247 (437)
T ss_pred             ----------------CCCHHHH-------------------HH-----HHhCCHHHHHHHHHHHHHHHHHHHHcchhhe
Confidence                            0000000                   00     0000112111111111111111111111122


Q ss_pred             hhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHH
Q 043156          343 SIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFE  422 (578)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~  422 (578)
                      +..+..+ +       ....+.+.....+..++..++.+++.+|+++|           +.+.+|.++..++++...+..
T Consensus       248 ~~~~~~~-~-------~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~~  308 (437)
T TIGR00792       248 YFTYVLG-D-------PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----------ILFAGGILLMVLGYLIFFFAG  308 (437)
T ss_pred             eEeeecC-C-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHcc
Confidence            2111111 0       00112334445677788888999998887766           456667777777766554421


Q ss_pred             HHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCC-------chhhHHHHHHHHHHHHH
Q 043156          423 VIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAP-------KGIKSLSTCFLWCSMAL  495 (578)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~i  495 (578)
                                             .+.+.+++..++.+++.+...+..+++..+.+|       ++.+|.+.|++++...+
T Consensus       309 -----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~  365 (437)
T TIGR00792       309 -----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKL  365 (437)
T ss_pred             -----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHH
Confidence                                   133444556677888888888888888888765       56789999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 043156          496 GYFFSTILVNIVNS  509 (578)
Q Consensus       496 g~~lg~~~~~~~~~  509 (578)
                      |..+++.+.+.+.+
T Consensus       366 g~~lg~~i~g~ll~  379 (437)
T TIGR00792       366 GQALAGFLVGLILG  379 (437)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998864

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.84  E-value=2.3e-19  Score=188.23  Aligned_cols=149  Identities=15%  Similarity=0.057  Sum_probs=111.5

Q ss_pred             HHHHHHHHhcC--CCHHHHHHHHHHH-----HHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccc
Q 043156           48 NLVTYFNGVLH--LDLAEAANQVTNY-----MGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKK  120 (578)
Q Consensus        48 ~l~~yl~~~lg--~s~~~~~~~~~~~-----~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (578)
                      +...++.++..  .++++.+.+.+..     .+...++.++.|+++||+ ||||++.++.++..++.++.          
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~----------   82 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLI----------   82 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHH----------
Confidence            44455555644  3445555544432     233346789999999998 99999999998888665543          


Q ss_pred             cccch--------hHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 043156          121 IEGSD--------AALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQ  192 (578)
Q Consensus       121 ~~~~~--------~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~  192 (578)
                      ...++        ...+++.|+++|++.+...+...+++.|.+|+++      |++..++.+.+..+|..+++.+++.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883        83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11222        2357889999999999999999999999999887      999999999999999999998876653


Q ss_pred             --------cccCchhHHHHHHHHHHHHHH
Q 043156          193 --------DNKGWDRGFGLSSVAVFLATI  213 (578)
Q Consensus       193 --------~~~g~~~~f~i~~~~~~~~~~  213 (578)
                              +.++||+.|.+.++..+++.+
T Consensus       157 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       157 YLLGDDALLEWGWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             HhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence                    357899999887766554433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.84  E-value=1.3e-18  Score=188.80  Aligned_cols=389  Identities=13%  Similarity=0.124  Sum_probs=237.9

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchhhh-hh
Q 043156           23 GGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAF----IGRFKA-VL   97 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grr~~-~~   97 (578)
                      .++|+.+.++...+......+.....++.+++ +.|.|.++++..... ... .++.++.|.++||+    +||||. +.
T Consensus         9 ~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~~-~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll   85 (491)
T PRK11010          9 FQQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSLV-GQA-YVFKFLWSPLMDRYTPPFLGRRRGWLL   85 (491)
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHH-HHH-HHHHHHHHHHHHcccccCCCCchHHHH
Confidence            34566777888888888888888888888875 559999999987333 222 26889999999994    188886 44


Q ss_pred             hhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHH
Q 043156           98 ISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAV  177 (578)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~  177 (578)
                      ++.+...++..++.       ......+.+.+.+.+++.+++.+...+...+++.|++|+++      |+++.++...+.
T Consensus        86 ~~~i~~~~~~~~~a-------~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~  152 (491)
T PRK11010         86 ATQLLLLVAIAAMG-------FLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGY  152 (491)
T ss_pred             HHHHHHHHHHHHHH-------HcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHH
Confidence            55555543332220       00113466778888999999999999999999999999876      999999999999


Q ss_pred             HHHHHHHHHHHHHhcc-ccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCch
Q 043156          178 CIGGAISVTLIVWIQD-NKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPM  256 (578)
Q Consensus       178 ~lG~~~~p~l~~~l~~-~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (578)
                      ++|..+++.+++++.+ ..|||..|++.++..++..+..++. ++.++.++++ +                      +. 
T Consensus       153 ~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~-~e~~~~~~~~-~----------------------~~-  207 (491)
T PRK11010        153 RLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA-PEPTDTIPVP-K----------------------TL-  207 (491)
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc-CCCccccccc-c----------------------ch-
Confidence            9999999999999988 4699999999887766655444332 2111000000 0                      00 


Q ss_pred             hhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhh
Q 043156          257 ELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCL  336 (578)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  336 (578)
                         +    +               ...                   .+++    +...+++...............+...
T Consensus       208 ---~----~---------------~~~-------------------~~l~----~~~~~~~~~~~ll~~~l~~~~~~~~~  242 (491)
T PRK11010        208 ---E----Q---------------AVV-------------------APLR----DFFGRNNAWLILLLIVLYKLGDAFAM  242 (491)
T ss_pred             ---h----h---------------hHH-------------------HHHH----HHHcCcCHHHHHHHHHHHHHHHHHHH
Confidence               0    0               000                   0000    00000111111111111111111222


Q ss_pred             hccchhhhhhhccCCCCCCCceeeCCCccc-CchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHH
Q 043156          337 AQLQTFSIQQGLTMDTSVTTSFHIPPASLP-ILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISM  415 (578)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~  415 (578)
                      ...++++.+. .+.+..       ..+.+. ....+..++...+.+++.||+++|           +.+.++.++..++.
T Consensus       243 ~~~~~~l~~~-~G~s~~-------~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~-----------~~l~i~~~l~~l~~  303 (491)
T PRK11010        243 SLTTTFLIRG-VGFDAG-------EVGLVNKTLGLLATIVGALYGGILMQRLSLF-----------RALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHh-cCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHH
Confidence            2222332221 121111       112222 233456778888888888887766           23344444444433


Q ss_pred             HHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHH
Q 043156          416 AIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMAL  495 (578)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~i  495 (578)
                      +.......                    ...+.+.+....++..+..++..+...++..+.+|++.+++..|+.+...++
T Consensus       304 l~~~~l~~--------------------~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~l  363 (491)
T PRK11010        304 AGYWLLSI--------------------TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAV  363 (491)
T ss_pred             HHHHHHHh--------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence            22221110                    0113333344445545555555666778888999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 043156          496 GYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSS  554 (578)
Q Consensus       496 g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  554 (578)
                      |..+++.+.|.+.+                  ..+|+..|.+.+++++++++..+.+.+
T Consensus       364 g~~~~~~~~G~l~~------------------~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        364 GRVYVGPVAGWFVE------------------AHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHH------------------HhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99988888887762                  124667898888999888888777644

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.84  E-value=1.2e-18  Score=188.40  Aligned_cols=383  Identities=13%  Similarity=0.062  Sum_probs=247.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      .+..+...+++.+++......-++-++ .++.-|....+.+.....+-..+..+++|.++||+ .|||+++.+-++.++.
T Consensus        11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~   88 (524)
T PF05977_consen   11 NFRRLWIAQLISNLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALV   88 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence            334455566666666665555555444 45667889999999999999999999999999998 9999999988776533


Q ss_pred             CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVT  186 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~  186 (578)
                      ..++.     ........+++.+++.-++.|++.+...|+..+++.|+.|+++      ..++.++.....|+.-.+||.
T Consensus        89 ~~~L~-----~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPa  157 (524)
T PF05977_consen   89 ALLLA-----VLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPA  157 (524)
T ss_pred             HHHHH-----HHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccch
Confidence            22210     0011223567788888899999999999999999999999887      899999999999999999999


Q ss_pred             HHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhh
Q 043156          187 LIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKE  266 (578)
Q Consensus       187 l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (578)
                      ++|.+....|-.+.|.+.++..++..+++...+++.+.++..+ ++.                         ..      
T Consensus       158 lgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~-e~~-------------------------~~------  205 (524)
T PF05977_consen  158 LGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSLPR-ERF-------------------------FS------  205 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccch-hhh-------------------------hh------
Confidence            9999988889899999998877666554443332211110000 000                         00      


Q ss_pred             hhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhh
Q 043156          267 AAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQ  346 (578)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (578)
                                    +..+                   .++     .+...+.+...+........+........+.+..+
T Consensus       206 --------------~l~~-------------------G~r-----yv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~  247 (524)
T PF05977_consen  206 --------------ALRE-------------------GLR-----YVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARD  247 (524)
T ss_pred             --------------hHHH-------------------HHH-----HHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHH
Confidence                          0000                   000     01111111111111111111111111122333332


Q ss_pred             hccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHH
Q 043156          347 GLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRK  426 (578)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~  426 (578)
                      ..+.+.       ...+.+.....++.++++.+..++-    +|.       +..+.+..+.++.+++++.+++..    
T Consensus       248 ~l~~~a-------~~yGll~a~~gvGai~Gal~~~~l~----~~~-------~~~~lv~~~~~~~a~~~~~lal~~----  305 (524)
T PF05977_consen  248 VLGGGA-------SGYGLLLAAFGVGAILGALLLPRLR----RRL-------SSRRLVLLASLLFALALLLLALSP----  305 (524)
T ss_pred             HhCCcH-------HHHHHHHHHHHHHHHHHHHHHHHhh----ccc-------CcchhhHHHHHHHHHHHHHHhcch----
Confidence            222111       1123455555666666666655543    221       222456667777777777766643    


Q ss_pred             hhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 043156          427 DVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNI  506 (578)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~  506 (578)
                                          +.+..++.+++.|++.....+..++..-+.+|+++||+.++++.+....+..+|..+.|.
T Consensus       306 --------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~  365 (524)
T PF05977_consen  306 --------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGF  365 (524)
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                556667778888999999999999999999999999999999999999999999999998


Q ss_pred             hhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 043156          507 VNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFM  552 (578)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  552 (578)
                      +.+..                  +.+..+...++..+++.++.+..
T Consensus       366 la~~~------------------g~~~al~~a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  366 LADHF------------------GVRTALLIAGAALLLSALIALRF  393 (524)
T ss_pred             HHHHh------------------CHHHHHHHHHHHHHHHHHHHHHh
Confidence            86321                  22345666666555655555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00896 CynX cyanate transporter

Probab=99.81  E-value=5.7e-19  Score=183.70  Aligned_cols=325  Identities=14%  Similarity=0.103  Sum_probs=208.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchh
Q 043156           47 VNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDA  126 (578)
Q Consensus        47 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (578)
                      ......+.+++|+|.++.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.++        +   ..++.
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~--------~---~~~~~   87 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILI--------R---SAPGT   87 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHH--------H---HhccH
Confidence            3344567889999999999999999999999999999999998 9999999988776644333        1   23567


Q ss_pred             HHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc--CchhHHHHH
Q 043156          127 ALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNK--GWDRGFGLS  204 (578)
Q Consensus       127 ~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~--g~~~~f~i~  204 (578)
                      ..+++.|++.|++.+...+..+.++.|.+|+ +      |++++++++.+.++|..+++.+++.+.++.  +||+.|.+.
T Consensus        88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~  160 (355)
T TIGR00896        88 ALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWW  160 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            7788999999999998888888888998864 4      899999999999999999999999887654  399988776


Q ss_pred             HHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhh
Q 043156          205 SVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLD  284 (578)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (578)
                      ++..++..+...   ++.+++++++ +                    + .                       ...    
T Consensus       161 ~~~~~~~~~~~~---~~~~~~~~~~-~--------------------~-~-----------------------~~~----  188 (355)
T TIGR00896       161 ALPALLALLAWI---PQVRRRVAAN-Q--------------------T-T-----------------------TRL----  188 (355)
T ss_pred             HHHHHHHHHHHh---hhhccccCCC-C--------------------C-C-----------------------CCC----
Confidence            654433322211   1111110000 0                    0 0                       000    


Q ss_pred             HhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCc
Q 043156          285 KAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPAS  364 (578)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (578)
                                        .+++     ..++++.....+...+....++......+.++ +. .+.+.       ...+.
T Consensus       189 ------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~-~~-~g~~~-------~~~g~  236 (355)
T TIGR00896       189 ------------------TPVR-----IWRSPLAWQVTVFFGLQSGLYYSLIGWLPAIL-IS-HGASA-------ATAGS  236 (355)
T ss_pred             ------------------CCch-----hhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCCH-------HHHHH
Confidence                              0000     00111111111111111122222222222222 11 11111       12334


Q ss_pred             ccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCc
Q 043156          365 LPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPL  444 (578)
Q Consensus       365 ~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (578)
                      +.....+..++..++.+++.||+.+|+          +.+.++..+..++.+.+.+..                      
T Consensus       237 ~~~~~~~~~i~~~~~~g~l~dr~~~~~----------~~~~~~~~~~~~~~~~~~~~~----------------------  284 (355)
T TIGR00896       237 LLALMQLAQAASALLIPALARRVKDQR----------GIVAVLAVLQLVGLCGLLFAP----------------------  284 (355)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhccch----------HHHHHHHHHHHHHHHHHHHhh----------------------
Confidence            555567778888888899888774431          345566777777766555433                      


Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhhhhheeeccC-CchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043156          445 PISTFWLSIQFFIFGIADMFTYVGLLEFFYSEA-PKGIKSLSTCFLWCSMALGYFFSTILVNIVNS  509 (578)
Q Consensus       445 ~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~  509 (578)
                      +... +.  ..++.|++.+...|...+...+.. +++.+|...++.+....+++.++|.+.+.+.+
T Consensus       285 ~~~~-~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~  347 (355)
T TIGR00896       285 MHGL-WA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD  347 (355)
T ss_pred             hhHH-HH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 11  245678888888887767665544 46778999999999999999999999998864

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.81  E-value=6.5e-18  Score=179.12  Aligned_cols=172  Identities=17%  Similarity=0.175  Sum_probs=136.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPP  107 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~  107 (578)
                      ++.++...+...+.+. +...+...+++++|.|..+.+++.+.+.+++.++.++.|+++||+ ||||++.+++++++++.
T Consensus         5 ~~~~~~~f~~~G~~~~-~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFAND-ITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHH-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            4444545555555543 443444567899999999999999999999999999999999998 99999999999988775


Q ss_pred             cccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 043156          108 PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTL  187 (578)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l  187 (578)
                      ++.       .......++..+++.|++.|+|.|...+..++++.+..|+++      |++..++.+...++|..++|.+
T Consensus        83 ~l~-------~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i  149 (410)
T TIGR00885        83 FLF-------WPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVV  149 (410)
T ss_pred             HHH-------HHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            442       011223577889999999999999999999999999988876      8899999999999999999999


Q ss_pred             HHHhccc--------------------------cCchhHHHHHHHHHHHHHHH
Q 043156          188 IVWIQDN--------------------------KGWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       188 ~~~l~~~--------------------------~g~~~~f~i~~~~~~~~~~~  214 (578)
                      ++.+...                          .+||++|++.+++.++..+.
T Consensus       150 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       150 AQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877321                          35999998877765554433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.80  E-value=4.2e-18  Score=177.17  Aligned_cols=156  Identities=13%  Similarity=0.111  Sum_probs=114.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchhhhh-hhhhhhhccCCcccccCCCCCcccc
Q 043156           47 VNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAF----IGRFKAV-LISGSVEFLPPPCNVFDPTAGCKKI  121 (578)
Q Consensus        47 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  121 (578)
                      ......+.+++|+|.++.++.... .+...+ .++.|.++||+    +||||.+ +++.++.++...++.      .. .
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~------~~-~   78 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS------FL-V   78 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH------cC-C
Confidence            334445567889999999999655 333344 88999999996    3899975 455544443322220      00 1


Q ss_pred             ccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccC-----
Q 043156          122 EGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKG-----  196 (578)
Q Consensus       122 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g-----  196 (578)
                      ...+...+....++.+++.+...++..+++.|++|+++      |+++.++...+.++|.++++.+++++..+.+     
T Consensus        79 ~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~  152 (356)
T TIGR00901        79 PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL  152 (356)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            12344455566667778888888999999999998876      9999999999999999999999999987777     


Q ss_pred             ---chhHHHHHHHHHHHHHHHHHh
Q 043156          197 ---WDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       197 ---~~~~f~i~~~~~~~~~~~~~~  217 (578)
                         ||..|++.++..++..+..++
T Consensus       153 ~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901       153 ITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHH
Confidence               999999988876665554443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.79  E-value=7.6e-18  Score=187.26  Aligned_cols=189  Identities=19%  Similarity=0.127  Sum_probs=146.1

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhh
Q 043156           23 GGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV  102 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~  102 (578)
                      +.+|.+.+.+....+....+.+........+.++++++.++.|++.+.+.+++.++.++.|+++||+ ||||.+.++.++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll  107 (633)
T TIGR00805        29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI  107 (633)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence            3455554555545555556666667777788999999999999999999999999999999999998 999999999988


Q ss_pred             hccCCcccccCCCC-----------------------Ccccc-----------------c--cchhHHHHHHHHHHHHhc
Q 043156          103 EFLPPPCNVFDPTA-----------------------GCKKI-----------------E--GSDAALLFVALYLIATGT  140 (578)
Q Consensus       103 ~~~~~~~~~~~~~~-----------------------~~~~~-----------------~--~~~~~~~~~~~~l~g~g~  140 (578)
                      ++++.++..+ |.+                       .|...                 .  ...+..++++|+++|+|.
T Consensus       108 ~~lg~ll~al-phf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~  186 (633)
T TIGR00805       108 MGLGSFLLSL-PHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA  186 (633)
T ss_pred             HHHHHHHHhC-hHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence            8877655421 100                       01000                 0  113557789999999999


Q ss_pred             cccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc----------------------Cch
Q 043156          141 AGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNK----------------------GWD  198 (578)
Q Consensus       141 g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~----------------------g~~  198 (578)
                      +...+...+++.|.+|+++      |++.+++++.+..+|.++|+++++++.+.+                      +|+
T Consensus       187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw  260 (633)
T TIGR00805       187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW  260 (633)
T ss_pred             CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence            9999999999999999987      999999999999999999999999887542                      267


Q ss_pred             hHHHHHHHHHHHHHHHHHhcC
Q 043156          199 RGFGLSSVAVFLATIIFAAGL  219 (578)
Q Consensus       199 ~~f~i~~~~~~~~~~~~~~~~  219 (578)
                      ..|++.+++.++..+.++++.
T Consensus       261 l~Fli~g~l~~l~~v~l~~~p  281 (633)
T TIGR00805       261 IGFLICGGVALLTSIPFFFFP  281 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhCc
Confidence            778887777666555444433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.79  E-value=1.5e-22  Score=217.62  Aligned_cols=391  Identities=15%  Similarity=0.129  Sum_probs=233.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccc---hhHHHHHHHHHHHH
Q 043156           62 AEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGS---DAALLFVALYLIAT  138 (578)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~  138 (578)
                      .+.++..+...++..++.+++|+++||+ |||++++++.++..++.++.          ..++   +...+.++|++.|+
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~R~~~G~  114 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILI----------AFAPSYNNFWMLLIGRFLIGF  114 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccc----------ccccccccccccccccccccc
Confidence            4578899999999999999999999998 99999999999999887775          4445   88899999999999


Q ss_pred             hccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc---cCchhHHHHHHHHHHHHHHHH
Q 043156          139 GTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDN---KGWDRGFGLSSVAVFLATIIF  215 (578)
Q Consensus       139 g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~---~g~~~~f~i~~~~~~~~~~~~  215 (578)
                      +.|+..+..+.++.|..|++.      |++..++.+....+|..++..++..+.+.   .+||..+.+.++..++..+..
T Consensus       115 ~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~  188 (451)
T PF00083_consen  115 GIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR  188 (451)
T ss_pred             ccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999987      99999999999999998887666544332   459999988777665443332


Q ss_pred             HhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCC--ccchhhHhhhhccCc
Q 043156          216 AAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRD--IFRFLDKAAIQKTST  293 (578)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  293 (578)
                      .+                                 .||+|+++..+++.+++++..++..+.+  +.+..+..+......
T Consensus       189 ~~---------------------------------~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~  235 (451)
T PF00083_consen  189 FF---------------------------------LPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQ  235 (451)
T ss_pred             cc---------------------------------cccccceeccccccccccccccccccccccccccccccccccccc
Confidence            22                                 2444555544444443333333321110  111101000000000


Q ss_pred             cccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHH-HhhhccchhhhhhhccCCCCCCCceeeCCC-cccCchhH
Q 043156          294 ENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMT-LCLAQLQTFSIQQGLTMDTSVTTSFHIPPA-SLPILPIL  371 (578)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i  371 (578)
                            .....|+...+... .+++.+..+.+.+.+.... .....+.+.+..+.           ..... .......+
T Consensus       236 ------~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~  297 (451)
T PF00083_consen  236 ------ESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFENA-----------GISNSFLATLILGL  297 (451)
T ss_pred             ------ccceeeeecccccc-cccccccccccccccccccccccccccccccccc-----------cccccccccccccc
Confidence                  00012222221111 1223322222222111111 11111111111111           11111 11112222


Q ss_pred             HHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHH-HHHHHHHhhhhhcCccCCCCCCCCccchhhH
Q 043156          372 FMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAA-IFEVIRKDVARDHNMLDAIPVVQPLPISTFW  450 (578)
Q Consensus       372 ~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (578)
                      ..++...+...+.|+++||           +.+..|.++++++++.++ ......               +.+...+...
T Consensus       298 ~~~~~~~~~~~~~~~~GRr-----------~~~i~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~  351 (451)
T PF00083_consen  298 VNFLGTLLAIFLIDRFGRR-----------KLLIIGLLLMAICSLILGIIFFLGV---------------SSSSWWSILS  351 (451)
T ss_pred             ccccccccccccccccccc-----------ccccccccccccccccccccccccc---------------cccccccccc
Confidence            2333333444677777777           345567777766666554 111000               0000112222


Q ss_pred             HHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcch
Q 043156          451 LSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNH  530 (578)
Q Consensus       451 ~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (578)
                      ++...+........+.+..+.+..|.+|.+.|+++.|+......+++.+++.+.+.+....               +   
T Consensus       352 i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~---------------~---  413 (451)
T PF00083_consen  352 IVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL---------------G---  413 (451)
T ss_pred             ceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------------c---
Confidence            2222222233344567888899999999999999999999999999999888776654211               1   


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Q 043156          531 LNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSV  564 (578)
Q Consensus       531 ~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~  564 (578)
                      ....|++.+++++++.++.+++.+++++++.|+.
T Consensus       414 ~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei  447 (451)
T PF00083_consen  414 GWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEI  447 (451)
T ss_pred             ccccchhhHHHHHHHHhheeEEEeeCCCCCHHHH
Confidence            1245778888888989999999999998887654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.79  E-value=8.1e-17  Score=170.59  Aligned_cols=166  Identities=16%  Similarity=0.118  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchhh-hhhhhhhhhccCC
Q 043156           33 AAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAF----IGRFK-AVLISGSVEFLPP  107 (578)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grr~-~~~~~~~~~~~~~  107 (578)
                      ...+.....+.....-+|.|+++ .|+|.+++|++......  .+..++.|+++||+    +|||| .+.++.++.++..
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            34445555555566778999875 59999999999777665  68899999999996    16766 6777666665433


Q ss_pred             cccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 043156          108 PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTL  187 (578)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l  187 (578)
                      .++.       ......+.+.+++..++.++..+...|+..+++.|++|+++      |+++.++...+.++|..+++.+
T Consensus        83 ~~l~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l  149 (402)
T PRK11902         83 AAMA-------FCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGL  149 (402)
T ss_pred             HHHH-------hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHH
Confidence            3320       00112345556666667778888888999999999999887      9999999999999999999999


Q ss_pred             HHHhccc-cCchhHHHHHHHHHHHHHHH
Q 043156          188 IVWIQDN-KGWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       188 ~~~l~~~-~g~~~~f~i~~~~~~~~~~~  214 (578)
                      ++++.+. +|||..|++.++..++..+.
T Consensus       150 ~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        150 ALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            9998875 59999999988766554443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.79  E-value=5.3e-17  Score=172.77  Aligned_cols=436  Identities=11%  Similarity=0.034  Sum_probs=255.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhh----hccchhhhhhhh-h
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLAD----AFIGRFKAVLIS-G  100 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Grr~~~~~~-~  100 (578)
                      .+++.+....+..++++-...++++.|+ +++|.+....+.+.....+...+..|+.|+++|    |+ ||||.++++ .
T Consensus         4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~   81 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGA   81 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHH
Confidence            3556677777778888887888888876 689999999999999999999999999999999    47 999998875 3


Q ss_pred             hhhccCCcccccCCCCCcccc----cc---chhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHH
Q 043156          101 SVEFLPPPCNVFDPTAGCKKI----EG---SDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLL  173 (578)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~  173 (578)
                      +...++.+++.+.+.......    ..   ......+++..+..++.....+...++++|.+|+++    ++++.++++.
T Consensus        82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~----~~~~~a~~~~  157 (477)
T TIGR01301        82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA----RRTRIANAYF  157 (477)
T ss_pred             HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh----HHHHHHHHHH
Confidence            333333222211000000000    00   011334445555566777777888999999999886    1236899999


Q ss_pred             HHHHHHHHHHHHHHHHHh--ccc-------------cCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHH
Q 043156          174 FLAVCIGGAISVTLIVWI--QDN-------------KGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQ  238 (578)
Q Consensus       174 ~~~~~lG~~~~p~l~~~l--~~~-------------~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (578)
                      ..+.++|..+|+.++++.  .+.             .+.++.|++.+++.+++.+...+..++.+..++++ ..      
T Consensus       158 ~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~-~~------  230 (477)
T TIGR01301       158 SFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDD-FI------  230 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcccc-ch------
Confidence            999999999999998865  211             15688999988877777666555444332111110 00      


Q ss_pred             HHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHH
Q 043156          239 VYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKI  318 (578)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  318 (578)
                                       ++.++.            .++.+..                      ..++...+...+.-|.
T Consensus       231 -----------------~~~~~~------------~~~~~~~----------------------~~~~~i~~~~~~mP~~  259 (477)
T TIGR01301       231 -----------------NSEAAP------------PSKHGEE----------------------AFFGELFGAFKYLPRP  259 (477)
T ss_pred             -----------------hhhccc------------ccccchh----------------------hhHHHHHHHHHHCCHH
Confidence                             000000            0000000                      0000000011111233


Q ss_pred             HHhHHHHHHHHHHHHHhhhccchhhhhh-hccCCCCCCCceeeC---CCcccCchhHHHHHHHHhhhhhhccccccccCC
Q 043156          319 ILGMIPIFCCTIVMTLCLAQLQTFSIQQ-GLTMDTSVTTSFHIP---PASLPILPILFMILAVPVYDRIFVPFAGKITGN  394 (578)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~  394 (578)
                      +.+.+...++...-|..+..+.+.+.-+ ..+-+..-...++-.   ..+-...+.+...+...+..++..++++|    
T Consensus       260 m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~----  335 (477)
T TIGR01301       260 VWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG----  335 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence            3445555566666666666666544332 111111100000000   11112223333333333344443333321    


Q ss_pred             CCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHh--hhhhcCccCCCCCCCCccch-hhHHHHHHHHHHHHHHHHhhhhhh
Q 043156          395 PTGITHLQRVGVGLVLSCISMAIAAIFEVIRKD--VARDHNMLDAIPVVQPLPIS-TFWLSIQFFIFGIADMFTYVGLLE  471 (578)
Q Consensus       395 ~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~g~g~~~~~~~~~~  471 (578)
                            ...-.++.++.++|++...+......+  ..+.++.+-      ..+.. .+..+..+.+.|+.....+...++
T Consensus       336 ------k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~Gi~~A~~~siPfa  403 (477)
T TIGR01301       336 ------KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESL------PPPTGIKASALIVFAILGIPLAITYSIPFA  403 (477)
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc------CcchhhHHHHHHHHHHhhHHHHHHHHHhHH
Confidence                  123367888888888887765421100  000011000      01112 366777888899999999999999


Q ss_pred             eeeccCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 043156          472 FFYSEAPK--GIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVY  549 (578)
Q Consensus       472 ~~~~~~P~--~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  549 (578)
                      ++.+..|+  +..|.++|+.|++-.+...+.....+.+.+...+                +-...+.+.++..+++.+..
T Consensus       404 l~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~----------------~~~~~~~~~gv~~~~aa~~~  467 (477)
T TIGR01301       404 LASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG----------------GNLPAFVVGAVAAFVSGLLA  467 (477)
T ss_pred             HHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC----------------CCeeHHHHHHHHHHHHHHHH
Confidence            99999995  4559999999999999999999877775432211                11256888899999999998


Q ss_pred             hhhccccc
Q 043156          550 LFMSSRYN  557 (578)
Q Consensus       550 ~~~~~~~~  557 (578)
                      ++..+|.+
T Consensus       468 ~~~~~~~~  475 (477)
T TIGR01301       468 LILLPRPR  475 (477)
T ss_pred             HHhCCCCC
Confidence            88877654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.77  E-value=6.1e-16  Score=167.00  Aligned_cols=388  Identities=12%  Similarity=0.017  Sum_probs=220.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchh
Q 043156           47 VNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDA  126 (578)
Q Consensus        47 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (578)
                      .....++.+++|-+ ....|+.+...++..+..++.|+|+|.+ |||..++.+.++..+|.++.          +.+.+.
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~----------atA~~~  131 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVC----------ATAQNM  131 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHh----------hcCCcH
Confidence            34556889999965 5678899999999999999999999998 99999999999999998775          677899


Q ss_pred             HHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHH
Q 043156          127 ALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSV  206 (578)
Q Consensus       127 ~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~  206 (578)
                      ..++++-.+.|+|.|.... ....++|..|.+.      |..+..+......+....+|.++..+..+.+|||.|++.++
T Consensus       132 ~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i  204 (599)
T PF06609_consen  132 NTFIAGMVLYGVGAGVQEL-AALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFII  204 (599)
T ss_pred             HHHHHHHHHHHHhhHHHHH-HHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHH
Confidence            9999999999999877654 4556899999876      87777776666666666778887777766789999999988


Q ss_pred             HHHHHHHHHHhcC-CCceec-CCCCcch---H--HHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCc
Q 043156          207 AVFLATIIFAAGL-PLYRFQ-VVQGSSV---L--IEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDI  279 (578)
Q Consensus       207 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (578)
                      ...++++..+++. +..+.+ +.++.+.   +  .|..+.+......-....+-+      .....     ...+.+...
T Consensus       205 ~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~------wgG~~-----~~~W~Sa~V  273 (599)
T PF06609_consen  205 WSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLS------WGGYP-----YYPWKSAHV  273 (599)
T ss_pred             HHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHh------ccCCC-----CCCCCCccc
Confidence            7666655444333 221111 1111011   1  233333333222000000000      00000     000111111


Q ss_pred             cchhhH-----hhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhccC-CCC
Q 043156          280 FRFLDK-----AAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTM-DTS  353 (578)
Q Consensus       280 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  353 (578)
                      ..-+-.     .....-|.+.. ..+--.|++.     .+++|.+ ...  .....+..+.+.....++.++..++ +..
T Consensus       274 Ia~lviG~~~Lv~F~~wE~~~~-~~~Pl~P~~L-----f~~~r~~-~~~--lvi~fi~G~~~~s~~~l~p~~~~~vf~~d  344 (599)
T PF06609_consen  274 IAPLVIGFVLLVAFVVWEWFGA-PKDPLFPHRL-----FKDRRGF-AAL--LVISFISGMNFFSVNILWPQQVVNVFGSD  344 (599)
T ss_pred             hhhHHHHHHHHHHHHHhhhhcc-CCCCcCCHHH-----hccchHH-HHH--HHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence            111100     01000000000 0000023322     2222221 111  1122222233333333444433321 111


Q ss_pred             CCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 043156          354 VTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHN  433 (578)
Q Consensus       354 ~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (578)
                      .. +. ...++......+.....+.+.+.+..+. ||         .++.+.+|.+++++++..++...           
T Consensus       345 ~~-~~-~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~---------~Kw~li~~~~~~ta~~Gama~~~-----------  401 (599)
T PF06609_consen  345 PI-SI-TEIGWISSPVGFGSCAGAVILGLLFSKI-RH---------IKWQLIFGSVLMTAFCGAMAAVR-----------  401 (599)
T ss_pred             Cc-cc-ceeehhhhhHHHHHHHHHHHHHHHHHHc-cc---------hhHHHHHHHHHHHHHHHHHHHcc-----------
Confidence            00 00 0123344445555555555566554322 22         22566778777776655554432           


Q ss_pred             ccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043156          434 MLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIV  507 (578)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~  507 (578)
                               +.+.+.+  +...++.+++.+....+....+.-.+|++.-|+++|+....+.+|+.+|..+...+
T Consensus       402 ---------~~n~~~~--i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  402 ---------PDNKNAA--IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             ---------CCCcchH--HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                     1111222  23346777888888877888888899999999999999999999999998776543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09848 glucuronide transporter; Provisional

Probab=99.75  E-value=3.3e-16  Score=168.35  Aligned_cols=361  Identities=11%  Similarity=0.059  Sum_probs=202.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhhhh-hhhhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAF---IGRFKAV-LISGS  101 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~~~-~~~~~  101 (578)
                      +..+.-...++..++.+....++++.|+++.+|++..++|.+.+...+...+..|+.|+++||.   +||||.+ .++.+
T Consensus         8 ~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~   87 (448)
T PRK09848          8 RTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA   87 (448)
T ss_pred             HHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence            3444455577777888887888999999999999999999999999999999999999999994   2777754 44433


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHH-----
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLA-----  176 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~-----  176 (578)
                      ...+...++.   ...............++...+.+++.+...++..++..+..+..+     +|.+..++..++     
T Consensus        88 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~r~~~~~~r~~~~~~~~  159 (448)
T PRK09848         88 PLMIFSVLVF---WVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ-----SRARLGAARGIAASLTF  159 (448)
T ss_pred             HHHHHHHHHH---hCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH-----HHHHHHHHHHHHHHHHH
Confidence            3332211110   000000111223334455566788888888888888888777644     377776665433     


Q ss_pred             HHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCch
Q 043156          177 VCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPM  256 (578)
Q Consensus       177 ~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (578)
                      .+++..++|.+.+.........+..+. .+..+++.+..++.....+.+.+.+ .                     +++ 
T Consensus       160 ~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~-~---------------------~~~-  215 (448)
T PRK09848        160 VCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRI-V---------------------AQP-  215 (448)
T ss_pred             HHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCC-c---------------------cCC-
Confidence            456666777766644321111111111 1112222222222111111110000 0                     000 


Q ss_pred             hhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhh
Q 043156          257 ELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCL  336 (578)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  336 (578)
                                              ...+.                   ++    +-.+ .|.+....   ....+.+..+
T Consensus       216 ------------------------~~~~~-------------------~~----~l~~-n~~f~~~~---~~~~~~~~~~  244 (448)
T PRK09848        216 ------------------------SLKIS-------------------LQ----TLKR-NRPLFMLC---IGALCVLIST  244 (448)
T ss_pred             ------------------------CHHHH-------------------HH----HHhC-CchHHHHH---HHHHHHHHHH
Confidence                                    00000                   00    0001 11111111   1111112221


Q ss_pred             hcc---chhhhhhhccCCCCCCCceeeCCCcccCch-hHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHH
Q 043156          337 AQL---QTFSIQQGLTMDTSVTTSFHIPPASLPILP-ILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSC  412 (578)
Q Consensus       337 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~  412 (578)
                      ...   .+++.++..+.+.       . .+.+...+ .+..++..|+.+++.+|+++|           +.+.+|.++..
T Consensus       245 ~~~~~~~~~~~~~~~g~~~-------~-~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----------~~~~~g~~~~~  305 (448)
T PRK09848        245 FAVSASSLFYVRYVLNDTG-------L-FTVLVLVQNLVGTVASAPLVPGMVARIGKK-----------NTFLIGALLGT  305 (448)
T ss_pred             HHHhhhheeeEeeecCChH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHH
Confidence            111   1222221111110       0 11121222 345666778888887776665           46677887777


Q ss_pred             HHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCch-------hhHHH
Q 043156          413 ISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKG-------IKSLS  485 (578)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~-------~rg~~  485 (578)
                      ++.+.+.+..                      ..+.+++....++.++|+++..+..+++..+..|++       .+|.+
T Consensus       306 i~~~~~~~~~----------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~  363 (448)
T PRK09848        306 CGYLLFFWVS----------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLT  363 (448)
T ss_pred             HHHHHHHHcC----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHH
Confidence            7766655421                      224455566678889999999999999999988765       46999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcc
Q 043156          486 TCFLWCSMALGYFFSTILVNIVNSA  510 (578)
Q Consensus       486 ~g~~~~~~~ig~~lg~~~~~~~~~~  510 (578)
                      .|++++.+.+|..+++.+.+.+...
T Consensus       364 ~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        364 YSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998877643

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.75  E-value=2.8e-16  Score=172.21  Aligned_cols=140  Identities=15%  Similarity=0.085  Sum_probs=125.1

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHH
Q 043156           55 GVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALY  134 (578)
Q Consensus        55 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (578)
                      +..+.+........+++.++..+++++.|+++||+ |||++++.++++.+++.+..          +.+.++..+++.|+
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~----------a~a~~~~~~~~~Rf  179 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILT----------AFAPNYWMFLIFRF  179 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHH----------HHhCcHHHHHHHHH
Confidence            56677888999999999999999999999999997 99999999999988665554          67799999999999


Q ss_pred             HHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHH
Q 043156          135 LIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       135 l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~  214 (578)
                      +.|++.+....+...+++|++++++      |+.+.++ ......++.++|.+++++..  +||+.+++..+..++.++.
T Consensus       180 l~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  180 LSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             HHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998      9999999 78888888888888888877  8999999988887766555

>PRK09669 putative symporter YagG; Provisional

Probab=99.74  E-value=3.5e-16  Score=167.92  Aligned_cols=363  Identities=11%  Similarity=0.039  Sum_probs=209.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhh----ccchhhhhh-hh
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADA----FIGRFKAVL-IS   99 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Grr~~~~-~~   99 (578)
                      +|..+.-.+..+..+..+..+..+++.|+++++|+|..++|.+..+..+...+..|+.|+++||    + ||||-.+ ++
T Consensus         8 ~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~   86 (444)
T PRK09669          8 TKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWF   86 (444)
T ss_pred             HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHH
Confidence            3444444456667777777778899999999999999999999999999999999999999999    6 8865544 55


Q ss_pred             hhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH
Q 043156          100 GSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI  179 (578)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l  179 (578)
                      .+..++...++...|    ..........+++..++.+++.........++.+|+.+..+     +|++..++.....++
T Consensus        87 ~~~~~i~~~l~f~~p----~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-----eR~~l~~~r~~~~~~  157 (444)
T PRK09669         87 AIPFGVVCLLTFYTP----DFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR-----ERHSLQSWRFALSFI  157 (444)
T ss_pred             HHHHHHHHHHHHhCC----CCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-----HHHHHHHHHHHHHHH
Confidence            454443332221000    00112234445555666666666777777899999886543     389888888888888


Q ss_pred             HHHHHHHHHHHhcc-------ccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCC
Q 043156          180 GGAISVTLIVWIQD-------NKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELP  252 (578)
Q Consensus       180 G~~~~p~l~~~l~~-------~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (578)
                      |..+++.+...+..       ..+|+..+.+.+++..+..+..++..++.. +++++ ++                    
T Consensus       158 G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~-~~~~~-~~--------------------  215 (444)
T PRK09669        158 GGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERY-TPEVD-NS--------------------  215 (444)
T ss_pred             HHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEec-CCCCc-CC--------------------
Confidence            88877765433321       246777777766665554443333222110 00000 00                    


Q ss_pred             CCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHH
Q 043156          253 EDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVM  332 (578)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~  332 (578)
                                                 ....+.-                        +.....|.....+...+.....
T Consensus       216 ---------------------------~~~~~~~------------------------~~~~~n~~~~~l~~~~~~~~~~  244 (444)
T PRK09669        216 ---------------------------SSVWKDL------------------------KLLLGNSQWRIMFIFNVVLLTA  244 (444)
T ss_pred             ---------------------------CCHHHHH------------------------HHHhCCchHHHHHHHHHHHHHH
Confidence                                       0000000                        0000011111111111111111


Q ss_pred             HHhhhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHH
Q 043156          333 TLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSC  412 (578)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~  412 (578)
                      .........++..+.  +...     +. ...+.....+..++..++.+++.+|+++|           +...++.++..
T Consensus       245 ~~~~~~~~~y~~~~~--~~~~-----~~-~~~~~~~~~i~~ii~~~~~~~l~~r~gk~-----------~~~~~~~~~~~  305 (444)
T PRK09669        245 VVTRGGATLYYVNYV--LLRP-----DL-ATLFLVTGMIAGLFGALLSERLLGKFDRV-----------RAFKWTIVAFV  305 (444)
T ss_pred             HHHHhhhhheeeeee--cCCH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHhChH-----------HHHHHHHHHHH
Confidence            111111111111111  1100     00 11222333455667778888888777666           34444554444


Q ss_pred             HHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCC-------chhhHHH
Q 043156          413 ISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAP-------KGIKSLS  485 (578)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~  485 (578)
                      ++.+...+..                      +.+.+.+.+..++.+++.+...+..+++..+.++       ++..|..
T Consensus       306 ~~~~~~~~~~----------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~  363 (444)
T PRK09669        306 ILSALIFFIP----------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLV  363 (444)
T ss_pred             HHHHHHHHhC----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHH
Confidence            3332222211                      1234445556678899999999999999998886       4456788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccc
Q 043156          486 TCFLWCSMALGYFFSTILVNIVNSAT  511 (578)
Q Consensus       486 ~g~~~~~~~ig~~lg~~~~~~~~~~~  511 (578)
                      .++++++..+|..+|+.+.+.+.+..
T Consensus       364 ~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        364 FSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999998876433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.74  E-value=2.2e-16  Score=164.13  Aligned_cols=153  Identities=12%  Similarity=0.025  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccc
Q 043156           46 GVNLVTYFNGVLHLDLAE-AANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGS  124 (578)
Q Consensus        46 ~~~l~~yl~~~lg~s~~~-~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (578)
                      .+++..|+.+++|+|.++ .|.+.+.+..++.++.+++|+++||+ |-|+++.++.+.+.+..+++          ....
T Consensus        45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~----------~fa~  113 (511)
T TIGR00806        45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLL----------LLGT  113 (511)
T ss_pred             HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHH----------HHHH
Confidence            466778999999999999 99999999999999999999999998 99999999999998665554          4456


Q ss_pred             hhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHH
Q 043156          125 DAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLS  204 (578)
Q Consensus       125 ~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~  204 (578)
                      +...+.+.|++.|++.|... +...++..++|+++      |+++.++.+.+.++|.++++++++++ ..+||++-+.+.
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln  185 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLN  185 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHH
Confidence            78899999999999999999 99999999999987      99999999999999999999999995 467998766554


Q ss_pred             HH---HHHHHHHHHHh
Q 043156          205 SV---AVFLATIIFAA  217 (578)
Q Consensus       205 ~~---~~~~~~~~~~~  217 (578)
                      .+   ...+++++.++
T Consensus       186 ~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       186 IISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            33   33444444333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=2e-17  Score=165.04  Aligned_cols=150  Identities=16%  Similarity=0.105  Sum_probs=134.9

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHH
Q 043156           55 GVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALY  134 (578)
Q Consensus        55 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (578)
                      .+++-+.+++|++.+.+.+...+..|+.|.+.||+ |+|-.+++|++++...+++.          +...++++++++|.
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilF----------afg~sy~~l~vAR~  167 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILF----------AFGNSYPMLFVARS  167 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHH----------HHcchhHHHHHHHH
Confidence            34566778999999999999999999999999997 99999999999988776664          66788999999999


Q ss_pred             HHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHH
Q 043156          135 LIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       135 l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~  214 (578)
                      ++|+|.+...++..++++|.||++.     +|++++|+.-.+..+|-.+||..+|.+.+..|++.+|.+.+++.++-..+
T Consensus       168 LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L  242 (464)
T KOG3764|consen  168 LQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGAL  242 (464)
T ss_pred             HhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999887     59999999999999999999999999999999999999999988776655


Q ss_pred             HHhcCC
Q 043156          215 FAAGLP  220 (578)
Q Consensus       215 ~~~~~~  220 (578)
                      -++..+
T Consensus       243 ~l~vi~  248 (464)
T KOG3764|consen  243 QLLVIE  248 (464)
T ss_pred             HHheeC
Confidence            555443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.74  E-value=5.9e-16  Score=165.41  Aligned_cols=356  Identities=13%  Similarity=0.063  Sum_probs=232.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhh----hccchhhhhh-hhhhhhccCCcc
Q 043156           35 FGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLAD----AFIGRFKAVL-ISGSVEFLPPPC  109 (578)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Grr~~~~-~~~~~~~~~~~~  109 (578)
                      .+...+.+.....++..|+++.+|++....|.+.....+...+..|+.|+++|    |+ ||||-++ ++.+..+++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence            45555566666678899999999999999999999999999999999999999    77 9877665 566666655444


Q ss_pred             cccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043156          110 NVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIV  189 (578)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~  189 (578)
                      +... . +...........+.+..++..++......+..++..|..+.++     +|.+..++-.....+|..+...+.+
T Consensus        89 lf~~-~-p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~  161 (428)
T PF13347_consen   89 LFSP-P-PAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAP  161 (428)
T ss_pred             hhcc-c-cchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            3100 0 0000111123344666677788888888899999999998765     3999999988888888876666665


Q ss_pred             Hhccc-------cCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhc
Q 043156          190 WIQDN-------KGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEIN  262 (578)
Q Consensus       190 ~l~~~-------~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (578)
                      .+.+.       .+|++...+.+++.+++.++..+..|+...+.+++ ++                              
T Consensus       162 ~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~-~~------------------------------  210 (428)
T PF13347_consen  162 ILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQ-EK------------------------------  210 (428)
T ss_pred             hhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccc-cc------------------------------
Confidence            54322       15888888877776666555554444310000000 00                              


Q ss_pred             hhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchh
Q 043156          263 MDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTF  342 (578)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~  342 (578)
                                      .                       .+++...++-.++ |.....+.........+........+
T Consensus       211 ----------------~-----------------------~~~~~~~~~~~~n-r~~~~l~~~~~~~~~~~~~~~~~~~y  250 (428)
T PF13347_consen  211 ----------------K-----------------------ISLRDSLRSLFRN-RPFRILLLAFFLQWLAFALMNTFLPY  250 (428)
T ss_pred             ----------------c-----------------------cccccchhhhccc-chHHHHHHHHHHHHhhhhhhhhHHHH
Confidence                            0                       0000000000111 22222222222222222222222223


Q ss_pred             hhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHH
Q 043156          343 SIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFE  422 (578)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~  422 (578)
                      +..+..+.+        ...+.+.....+..++..|+.+++.+|+++|           +.+..+.++..++.++..+..
T Consensus       251 ~~~~vl~~~--------~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~-----------~~~~~~~~~~~~~~~~~~~~~  311 (428)
T PF13347_consen  251 YFTYVLGNE--------GLISIFMLIFFVASIVGSPLWGRLSKRFGKK-----------KVYIIGLLLAALGFLLLFFLG  311 (428)
T ss_pred             HHHHHhcCc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHccce-----------eehhhhHHHHHHHHHHHHHHH
Confidence            333222211        1123444566778888999999999888777           456778888888887776654


Q ss_pred             HHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCc-------hhhHHHHHHHHHHHHH
Q 043156          423 VIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPK-------GIKSLSTCFLWCSMAL  495 (578)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~~g~~~~~~~i  495 (578)
                                            ..+.+++.+..++.+++.+......+++..+..+.       +..|...|++++...+
T Consensus       312 ----------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~  369 (428)
T PF13347_consen  312 ----------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI  369 (428)
T ss_pred             ----------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence                                  13677888888999999999999999999998873       5579999999999999


Q ss_pred             HHHHHHHHHHhhhcc
Q 043156          496 GYFFSTILVNIVNSA  510 (578)
Q Consensus       496 g~~lg~~~~~~~~~~  510 (578)
                      +..++..+.+.+...
T Consensus       370 ~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  370 GQGLAGAIVGLLLAL  384 (428)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998877643

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.73  E-value=1.4e-15  Score=164.66  Aligned_cols=368  Identities=10%  Similarity=0.023  Sum_probs=213.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhh----hccchhh-hhhhhhhh
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLAD----AFIGRFK-AVLISGSV  102 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Grr~-~~~~~~~~  102 (578)
                      -+.-.+..+..++.+..+.++++.|+++.+|++...+|.+.....+...+..|+.|+++|    |+ |||| .++++.+.
T Consensus         8 ~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~   86 (473)
T PRK10429          8 KLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLA   86 (473)
T ss_pred             HHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHH
Confidence            334456677778888888899999999999999999999999999999999999999999    76 9955 44456555


Q ss_pred             hccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                      .+++..++..   .. ..........+++..++..++.........+++.|+.+..+     +|.+..++-....++|+.
T Consensus        87 ~~i~~~llf~---~p-~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~~l~~~~~~~~~ig~~  157 (473)
T PRK10429         87 NSVVLFLLFS---AH-LFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----EREQLVPYPRFFASLAGF  157 (473)
T ss_pred             HHHHHHHHHc---CC-CCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHHHHHHHHHHHHHHHHH
Confidence            5544333210   00 00111123344455566678888888888999999986443     399999987777788766


Q ss_pred             HHHHHHHHhcc-------ccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCc
Q 043156          183 ISVTLIVWIQD-------NKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDP  255 (578)
Q Consensus       183 ~~p~l~~~l~~-------~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (578)
                      +.+.+...+..       ..+|+....+.+++.+++.+..++..++.... +.. .+                   +++ 
T Consensus       158 ~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~-~~~-~~-------------------~~~-  215 (473)
T PRK10429        158 VTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS-DNQ-VS-------------------AEG-  215 (473)
T ss_pred             HHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCc-ccc-cc-------------------ccc-
Confidence            66555443211       12466655555555444443333322221100 000 00                   000 


Q ss_pred             hhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHh
Q 043156          256 MELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLC  335 (578)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~  335 (578)
                                            +.                       .+++...+.-.++ |.+...+............
T Consensus       216 ----------------------~~-----------------------~~~~~~~~~~~~n-~~~~~ll~~~~~~~~~~~~  249 (473)
T PRK10429        216 ----------------------SH-----------------------LTLKDIVALIYKN-DQLSCLLGMALAYNIASNI  249 (473)
T ss_pred             ----------------------cC-----------------------CCHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHH
Confidence                                  00                       0000000000011 2222222211111111122


Q ss_pred             hhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHH
Q 043156          336 LAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISM  415 (578)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~  415 (578)
                      ......++..+... +.       ...+.+.....+..++..|+.+++.+|+++|           +.+.++.++..++.
T Consensus       250 ~~~~~~y~~~y~~~-~~-------~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-----------~~~~~~~~~~~~~~  310 (473)
T PRK10429        250 INGFAIYYFTYVIG-DA-------DLFPYYLSYAGAANLVTLILFPRLVKSLSRR-----------ILWAGASIFPVLSC  310 (473)
T ss_pred             HhhheeeEEEEECC-CH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHH
Confidence            22222222221111 00       0112334445577788888899988877776           34555665555454


Q ss_pred             HHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCC-------chhhHHHHHH
Q 043156          416 AIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAP-------KGIKSLSTCF  488 (578)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~  488 (578)
                      +.......                   ..+.+.+.+++..++.+++.+...+..+++..+.++       ++..|...|.
T Consensus       311 ~~~~~~~~-------------------~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~  371 (473)
T PRK10429        311 GVLLLMGL-------------------AAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSV  371 (473)
T ss_pred             HHHHHHhc-------------------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHH
Confidence            44332210                   001234455556677888999888888899999877       4556779999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccc
Q 043156          489 LWCSMALGYFFSTILVNIVNSAT  511 (578)
Q Consensus       489 ~~~~~~ig~~lg~~~~~~~~~~~  511 (578)
                      +.+..-++..+++.+.+.+....
T Consensus       372 ~~~~~K~~~al~~~i~g~~l~~~  394 (473)
T PRK10429        372 QTMVVKGGSAFAAFFIGVVLGLI  394 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999998876433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.73  E-value=3e-15  Score=157.89  Aligned_cols=177  Identities=12%  Similarity=-0.039  Sum_probs=119.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH--HHHHHHHHHHHHhHH-HHHhhhccchhhhhhhhhhhhc
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQ--VTNYMGTSYILSIVV-ALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~--~~~~~~~~~~~~~~~-G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      ...+....+...+.+....+.+|.|++ +.|.|.++.|..  .+.......+..|+. ++.+||+ ||||.+++.+.+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            455666777788887878899998886 569999999997  456677777777766 6689997 99999755543221


Q ss_pred             c-CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          105 L-PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       105 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      . .....     .... ........++....+.++..+...+...++..|..++++      ++...+....+..+|..+
T Consensus        81 ~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~g~~lG~~~  148 (390)
T TIGR02718        81 SACLASL-----ALVG-PDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIAGVMIGFFG  148 (390)
T ss_pred             HHHHHHH-----HcCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHHHHHHHHHH
Confidence            0 00000     0000 111112223333444555556666666667777776664      677777788888999999


Q ss_pred             HHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhc
Q 043156          184 SVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAG  218 (578)
Q Consensus       184 ~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~  218 (578)
                      |+.+.+++.+++|||..|++.++..++..+..++.
T Consensus       149 g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       149 GGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            99888999998999999999888766655554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.71  E-value=5.4e-15  Score=145.87  Aligned_cols=426  Identities=15%  Similarity=0.078  Sum_probs=241.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCC
Q 043156           37 FENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTA  116 (578)
Q Consensus        37 ~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~  116 (578)
                      ++-....+....+..-++...|.+.-+...+......+..++.-..|.++|++ ||||.+.+...+..+...+       
T Consensus        88 mad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~i-------  159 (528)
T KOG0253|consen   88 MADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVI-------  159 (528)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHh-------
Confidence            33334444455566677788898889999999999999999999999999998 9999998887766633223       


Q ss_pred             CccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 043156          117 GCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKG  196 (578)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g  196 (578)
                         ...++++..+++.|.+.++|.|+ .|...++-.|..|..+      |...+-.. ....+|.++...+.-....++|
T Consensus       160 ---s~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~g  228 (528)
T KOG0253|consen  160 ---SGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFG  228 (528)
T ss_pred             ---hcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence               25678999999999999999999 8999999999999887      88877666 8889999999888877778889


Q ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCC
Q 043156          197 WDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPH  276 (578)
Q Consensus       197 ~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (578)
                      |||..+.......+.+.+..+..+..+...-++ ++.+.+..+-+-|..|+.. +|.-..+...+.+.++++.+      
T Consensus       229 wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G-~~~kAletL~kiArmNg~q-lplgvl~~s~~~~~e~e~~~------  300 (528)
T KOG0253|consen  229 WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKG-DDYKALETLHKIARMNGKQ-LPLGVLESSAIDRQEQEESD------  300 (528)
T ss_pred             HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcC-ChHHHHHHHHHHHHhcCCC-CCcceeeeehhhhhhhhhhc------
Confidence            999988888766666655555544333222222 2322222222233333332 22211111111111111111      


Q ss_pred             CCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhh---------
Q 043156          277 RDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQG---------  347 (578)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  347 (578)
                            +++.+.+..       .+.+....+..  ...-||+.+..+..++....-|.......+-+.+..         
T Consensus       301 ------~~~~~~~a~-------ke~rg~~~nLl--sp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~  365 (528)
T KOG0253|consen  301 ------LDDSKSSAA-------KEVRGGTTNLL--SPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRF  365 (528)
T ss_pred             ------hhhhhhccc-------cccccchHhhc--ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhc
Confidence                  011100000       00001100000  112244444444333332221111111111111100         


Q ss_pred             --ccCCCCCCCceeeCC-CcccC--chhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHH
Q 043156          348 --LTMDTSVTTSFHIPP-ASLPI--LPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFE  422 (578)
Q Consensus       348 --~~~~~~~~~~~~~~~-~~~~~--~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~  422 (578)
                        ..++...  ...... .-+..  +..+.-.-+.-+...++||++||           +.+...++++++..+.+..-.
T Consensus       366 ~p~e~e~~~--~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK-----------kTMal~l~~f~iflfll~~c~  432 (528)
T KOG0253|consen  366 LPTELETRA--NCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK-----------KTMALSLILFGIFLFLLTTCK  432 (528)
T ss_pred             chhHHHhhh--cCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch-----------hHHHHHHHHHHHHHHHHHHhc
Confidence              0000000  000000 00000  00111111122345577888888           457777777777766554422


Q ss_pred             HHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 043156          423 VIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTI  502 (578)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~  502 (578)
                                          .......++   +..-.+. ....-..|.|.-|..|+..|+++.|....+.++|+++.|.
T Consensus       433 --------------------~rn~~tvll---f~arafi-sg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~  488 (528)
T KOG0253|consen  433 --------------------TRNAYTVLL---FTARAFI-SGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPV  488 (528)
T ss_pred             --------------------CcchhHHHH---HHHHHHH-hchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhH
Confidence                                011122222   2222332 2335667899999999999999999999999999999998


Q ss_pred             HHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 043156          503 LVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQ  561 (578)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~  561 (578)
                      +. ....       ....+            .-.+.+++++++.+..+++=.+.++++.
T Consensus       489 iA-~~~e-------~s~sl------------~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  489 IA-MRAE-------LSTSL------------PIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             HH-HHhc-------cceee------------hHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            87 3321       11122            2556777888888888887666666543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.71  E-value=1.9e-16  Score=170.51  Aligned_cols=427  Identities=11%  Similarity=0.027  Sum_probs=264.1

Q ss_pred             hHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           28 SLLILAAFGFENLATIALG---VNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~---~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      -|.++++.|+.+...+++.   ..+-..++++++-+..+++|+.++......+..|+.+.+.||+ |.|++.+.|.++.+
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~  122 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA  122 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence            5677777777777777764   2345677889999999999999999999999999999999998 99999999999999


Q ss_pred             cCCcccccCCCCCccccccchhHHHHH-HHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFV-ALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      .|.++.          .++.+.+.+++ .=++.|+|.|+.+.....+++.+|+++       |+.+.|+...+..+|..+
T Consensus       123 ~g~~ls----------sF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~~GsG~G~~~  185 (509)
T KOG2504|consen  123 LGLLLS----------SFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAVSGTGVGTVV  185 (509)
T ss_pred             HHHHHH----------HHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhhccCCcceee
Confidence            887664          45566665554 445579999999999999999888865       999999999999999999


Q ss_pred             HHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhch
Q 043156          184 SVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINM  263 (578)
Q Consensus       184 ~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (578)
                      =|.+..++.+.+|||..+++.+.+.+-..+.....++.....++..+.....                +   ....+...
T Consensus       186 ~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~----------------~---~~~~~~~~  246 (509)
T KOG2504|consen  186 FPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRN----------------S---AASVESTP  246 (509)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhcc----------------c---cccccccc
Confidence            9999999999999999999988777655555555444222111111000000                0   00000000


Q ss_pred             hh-hhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccc-hhhhhHHHHHhHHHHHHHHHHHHHhhhccch
Q 043156          264 DK-EAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRV-TQVENAKIILGMIPIFCCTIVMTLCLAQLQT  341 (578)
Q Consensus       264 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~  341 (578)
                      .+ +.....++.++.. ....+....+....     .....+-+.... .+.+-.|. ...+.+..........+.....
T Consensus       247 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~ll~~-~~fl~~~~~~~~~~~g~~~p~~  319 (509)
T KOG2504|consen  247 KPVELRISERDSGLKK-LSLSNLATLKRGPD-----KWRNSPLQAFLSMLDLSLLKD-PKFLLLALSNLFAYLGFNVPFV  319 (509)
T ss_pred             cccccccccCCCCCCc-ccccchhhhhhCCc-----cccccchhhhhhhhhHHHHcC-chHHHHHHHHHHHHHHHHHHHH
Confidence            00 0000000000000 00000000000000     000000000000 00011111 0111111111111111111111


Q ss_pred             hhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHH
Q 043156          342 FSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIF  421 (578)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~  421 (578)
                      ++..+..  +..+.   ....+.+..+..+..+++-++.+.+.|+-..+         ......+++++.+++.+.+.+.
T Consensus       320 ~l~~~~~--~~g~~---~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~---------~~~~~~~~ll~~gl~~~~~p~~  385 (509)
T KOG2504|consen  320 YLPSYAK--SLGLS---SNDAAFLLSIIGVSDIIGRIILGLLADKPGIR---------ALVLFLLTLLIAGLARLFLPFA  385 (509)
T ss_pred             HHHHHHh--hcCCC---hhhhHHHHHHHHHhhhhhhhhhhhhcCccccc---------hHHHHHHHHHHHHHHHHHHHHh
Confidence            2222211  11111   12233455556677777777888887654422         2345566777777777665554


Q ss_pred             HHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHH
Q 043156          422 EVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFST  501 (578)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~  501 (578)
                      .                        +.+.++...+++|+..+...........++.+.+.-..+.|+..+++.++..+|+
T Consensus       386 ~------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gp  441 (509)
T KOG2504|consen  386 T------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGP  441 (509)
T ss_pred             c------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCc
Confidence            3                        5567777778889988887777777888999999999999999999999999999


Q ss_pred             HHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhc
Q 043156          502 ILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMS  553 (578)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  553 (578)
                      .+.+.+.+.+                 ++|+..|...++..+++.++.++..
T Consensus       442 Piag~~~d~t-----------------g~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  442 PIAGLLYDIT-----------------GNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ccceeeeecc-----------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence            9988666433                 2366789999999999888877776

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.70  E-value=4.4e-16  Score=154.63  Aligned_cols=121  Identities=15%  Similarity=0.024  Sum_probs=103.4

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHH
Q 043156           55 GVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALY  134 (578)
Q Consensus        55 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (578)
                      ++.+.+..-+|.+-+.|.+...+.++..|.+|||+ |||.++++|++..++...+.          +.+.++..++++|+
T Consensus        61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~----------~~S~~F~afv~aR~  129 (451)
T KOG2615|consen   61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLW----------ALSRNFAAFVLARF  129 (451)
T ss_pred             CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence            33444556789999999999999999999999998 99999999988877644343          55677777777899


Q ss_pred             HHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043156          135 LIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQD  193 (578)
Q Consensus       135 l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~  193 (578)
                      +.|+..|-. ..+.++++|.+++++      |+.+++....+..+|.++||+++|++.+
T Consensus       130 l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  130 LGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             hhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence            999988754 455899999999988      9999999999999999999999999987

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.67  E-value=1.1e-15  Score=155.34  Aligned_cols=402  Identities=11%  Similarity=0.028  Sum_probs=213.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHH
Q 043156           59 LDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIAT  138 (578)
Q Consensus        59 ~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  138 (578)
                      +++...+.+.....++..+++++.|+++||+ |||+++...++++.+++++..   .+.+-..-..-...+...|+++|+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~---~s~~~~~~~~~m~~L~~~R~~LGi  156 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSG---LSVGTTSPLGVMMTLCFFRFLLGI  156 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhc---cCCCCCCCcchhhHHHHHHHHhhc
Confidence            5667789999999999999999999999998 999999999999887765431   111111111235678899999999


Q ss_pred             hccccccccccccccCCCCCChHHHhhhhhHHHHHHHH----HHHHHHHHHHHHHHhccc-----------cCchhHHHH
Q 043156          139 GTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLA----VCIGGAISVTLIVWIQDN-----------KGWDRGFGL  203 (578)
Q Consensus       139 g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~----~~lG~~~~p~l~~~l~~~-----------~g~~~~f~i  203 (578)
                      |.|+-+|...++.+|...++.      |+...+.....    .-.|++++-++.+.+...           .=||..|.+
T Consensus       157 GIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~gl  230 (538)
T KOG0252|consen  157 GIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGL  230 (538)
T ss_pred             cccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHH
Confidence            999999999999999988875      88887764444    444444443333333211           128887777


Q ss_pred             HHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchh
Q 043156          204 SSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFL  283 (578)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (578)
                      .++..+..+..-+.+        |+. .++.        +...+               +.+.+..+..+..+.    .+
T Consensus       231 g~vpa~~~ly~Rl~M--------~Et-~~Y~--------al~~~---------------~~~~a~~d~~k~~~~----~~  274 (538)
T KOG0252|consen  231 GAVPALLVLYFRLKM--------PET-ARYT--------ALVSK---------------KLKQAAGDMKKVLSV----DI  274 (538)
T ss_pred             HHHHHHHHHHhhhcC--------Ccc-hhHH--------HHhhc---------------CHhhhhhcccccccc----cc
Confidence            655443332221111        111 1111        00000               000000111111110    00


Q ss_pred             hHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhh-ccchhhhhhhccCCCCCCCceeeCC
Q 043156          284 DKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLA-QLQTFSIQQGLTMDTSVTTSFHIPP  362 (578)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  362 (578)
                      +.++.....      ...+..+..+   ......+.  ...........|.++- ...+.-..+....+ +++  +.-..
T Consensus       275 ~~~~~~~~~------~~~~~~~~~~---F~~~f~~~--hg~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig--~~~~~  340 (538)
T KOG0252|consen  275 EAESTAESD------VPPPSNSFGL---FSRLFLRW--HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIG--VIPSA  340 (538)
T ss_pred             chhhccccC------CCCcccccch---HHHHHHHH--HHHHHHHHHHHHHhhhhhhhccccHHHHHHH-hhc--cCCCc
Confidence            000000000      0000111000   00111111  1111122222333321 11111111111111 111  00000


Q ss_pred             CcccCc------hhHHHHH----HHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 043156          363 ASLPIL------PILFMIL----AVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDH  432 (578)
Q Consensus       363 ~~~~~~------~~i~~il----~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~  432 (578)
                      ......      +.+....    +-++...++|.++||           +..+.|++++++-++.++....+        
T Consensus       341 ~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-----------~iq~~GF~~~~i~~~~~~~~y~~--------  401 (538)
T KOG0252|consen  341 NTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-----------YIQLMGFFIMTIFFFVIAGPYNQ--------  401 (538)
T ss_pred             chHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-----------HHHHhhHHHHHHHHHHHcCCccc--------
Confidence            111011      1111111    223344566666766           45677999999888887775411        


Q ss_pred             CccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 043156          433 NMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATR  512 (578)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~  512 (578)
                                 .......++..-+...+++-....+...+..|.+|.+.||++-|++..+.-.|+.++........+   
T Consensus       402 -----------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~---  467 (538)
T KOG0252|consen  402 -----------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTD---  467 (538)
T ss_pred             -----------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhh---
Confidence                       010111222222333344444555666677899999999999999999999999999988776652   


Q ss_pred             CccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Q 043156          513 GITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSV  564 (578)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~  564 (578)
                         +  ++.     ...++.+.|+.++.+++++.++.+++- +.++++.|+.
T Consensus       468 ---~--~yp-----~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~leei  508 (538)
T KOG0252|consen  468 ---H--NYP-----PNIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSLEEI  508 (538)
T ss_pred             ---c--cCC-----ccccchHHHHHHHHHHHHhHheeEEee-cccccCHHHh
Confidence               0  111     113456789999999999999888875 7777665443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.66  E-value=2.5e-14  Score=154.19  Aligned_cols=381  Identities=14%  Similarity=0.065  Sum_probs=218.2

Q ss_pred             CchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hhhhhh
Q 043156           24 GIKTSLL-ILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIG-----RFKAVL   97 (578)
Q Consensus        24 ~~r~~~~-l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----rr~~~~   97 (578)
                      +++..+. +....+...+. +.+...++.++++++|+|.++.+...+...+...+-.+ .|.++||+ +     ||+.++
T Consensus        23 ~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~   99 (468)
T TIGR00788        23 HPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLV   99 (468)
T ss_pred             CcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHH
Confidence            3555444 44466677777 77777888899999999999999999998888888666 99999998 8     777777


Q ss_pred             hhhhhhc-cCCcccccCCCCCccccccch-hHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHH
Q 043156           98 ISGSVEF-LPPPCNVFDPTAGCKKIEGSD-AALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFL  175 (578)
Q Consensus        98 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~  175 (578)
                      ++.++.. .....+          ....+ .....+.+++.+++.+....+.-+++.|..+ ++.   +.++...++.+.
T Consensus       100 ~~~~l~~~~~~~~l----------~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~  165 (468)
T TIGR00788       100 LSGLLGSAILYGLL----------PGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWG  165 (468)
T ss_pred             HHHHHHHHHHHHhc----------ccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHH
Confidence            7776652 221111          11222 3333447788899999999999999999999 431   123345556667


Q ss_pred             HHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCc
Q 043156          176 AVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDP  255 (578)
Q Consensus       176 ~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (578)
                      ..++|..+|+.++|++.+.++|+..|++.+...++..+...+..++.....|+. ...                      
T Consensus       166 ~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~-~~~----------------------  222 (468)
T TIGR00788       166 ASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRI-GTY----------------------  222 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccc-ccc----------------------
Confidence            778999999999999999899999999988776666444343322210001110 000                      


Q ss_pred             hhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHh
Q 043156          256 MELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLC  335 (578)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~  335 (578)
                      ....+...               .....+..+....           ..|     + .-..+.+...+.+   ....+..
T Consensus       223 ~~~~~~~~---------------~~~~~~~~~~~~~-----------~l~-----~-~l~~~~i~~~l~f---ifl~~~~  267 (468)
T TIGR00788       223 LEMNMALL---------------TLGVLANVKVQIL-----------GLR-----G-AIQLLEIAKPLIF---IFLSYAN  267 (468)
T ss_pred             chhhhhhh---------------hhhHHHHHHHHHH-----------HHH-----H-HHhcHHHHHHHHH---HHHHHhh
Confidence            00000000               0000000000000           000     0 0001111111111   1110111


Q ss_pred             hhccc-hhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHH
Q 043156          336 LAQLQ-TFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCIS  414 (578)
Q Consensus       336 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~  414 (578)
                      ..... +.+..+..  .  ++ .-....+.+.....+..+++..+.+++.    +|.       +..+.+.++.++..++
T Consensus       268 ~~~~~~~~f~~~~~--~--lG-~s~~~~G~~~~~~~v~~i~g~~~~~~~~----~~~-------~~r~~l~~~~~l~~~~  331 (468)
T TIGR00788       268 LPGASGSVFCATTQ--C--LP-GGPSFSGMSKVVGNLGSLCGVGGYDRFL----KTF-------PYRLLFGVTTLLYTLS  331 (468)
T ss_pred             cCCCCceeEEEEcc--c--CC-CCcchhhhHHHHHHHHHHHHHHHHHHHH----hhC-------CHHHHHHHHHHHHHHH
Confidence            11111 11111111  1  11 0122234444445566666666666664    332       3335566677666666


Q ss_pred             HHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHH
Q 043156          415 MAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMA  494 (578)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~  494 (578)
                      .+....... +-+.  ..+           ..+.+++....++.+++.++...+...++.+.+|++.+|+..++.+..++
T Consensus       332 ~~~~~~l~~-~~~~--~~g-----------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~  397 (468)
T TIGR00788       332 SLFDLILVK-RWNL--AFG-----------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILH  397 (468)
T ss_pred             HhCceeeee-cccc--ccC-----------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHH
Confidence            544321110 0000  000           01223444455777888888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 043156          495 LGYFFSTILVNIVNS  509 (578)
Q Consensus       495 ig~~lg~~~~~~~~~  509 (578)
                      +|..+++.+.+.+.+
T Consensus       398 lg~~v~~~~gg~l~~  412 (468)
T TIGR00788       398 LGSSVSGFLGVLLME  412 (468)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988887764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.66  E-value=2.3e-14  Score=144.39  Aligned_cols=155  Identities=17%  Similarity=0.180  Sum_probs=127.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      +|.-.+++..-|+..-........+.+.+++.++++..+++.+...+..++.++.++.|++.+|+ |+|+.++.|+.+++
T Consensus        11 ~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~a   89 (422)
T COG0738          11 VKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYA   89 (422)
T ss_pred             ceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHH
Confidence            44444444444444333344556677889999999999999999999999999999999999998 99999999999999


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      ++..+.       .+-+...++..++.+.++.+.|.+...++.+++++...|+++      -.+-+++.+....+|++++
T Consensus        90 vg~~lF-------~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~g  156 (422)
T COG0738          90 VGAALF-------WPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILG  156 (422)
T ss_pred             HHHHHH-------hhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHH
Confidence            886663       112345678889999999999999999999999999999876      5677888889999999999


Q ss_pred             HHHHHHhcc
Q 043156          185 VTLIVWIQD  193 (578)
Q Consensus       185 p~l~~~l~~  193 (578)
                      |.+++++..
T Consensus       157 p~~g~~lil  165 (422)
T COG0738         157 PLLGSSLIL  165 (422)
T ss_pred             HHHHHHHHH
Confidence            999988765

>PRK11462 putative transporter; Provisional

Probab=99.64  E-value=1.1e-13  Score=149.17  Aligned_cols=183  Identities=13%  Similarity=0.103  Sum_probs=126.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhhhhh-hhh
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAF---IGRFKAVL-ISG  100 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~~~~-~~~  100 (578)
                      +|.-+.-....+..+..+..+..++..|+++.+|++...+|.+..+.-+.-.+.-|+.|+++||.   +||||-.+ ++.
T Consensus         8 ~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~   87 (460)
T PRK11462          8 VKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGA   87 (460)
T ss_pred             HhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHH
Confidence            33444445667777777777788999999999999999999999999999999999999999962   39987665 454


Q ss_pred             hhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHH
Q 043156          101 SVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIG  180 (578)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG  180 (578)
                      +..++...++...|   . .........+.+...+..++.........++.+|+.+..+     +|++..++...+.++|
T Consensus        88 i~~~i~~~llf~~p---~-~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG  158 (460)
T PRK11462         88 LPFGIVCVLAYSTP---D-LSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAG  158 (460)
T ss_pred             HHHHHHHHHHHhCC---C-CCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHH
Confidence            55554433321000   0 0111123334555666678888888888899999998654     4999999999999998


Q ss_pred             HHHHHHHHHHhccc-------cCchhHHHHHHHHHHHHHHHHH
Q 043156          181 GAISVTLIVWIQDN-------KGWDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       181 ~~~~p~l~~~l~~~-------~g~~~~f~i~~~~~~~~~~~~~  216 (578)
                      ..+++.+...+...       .+|+....+.+++..++.++.+
T Consensus       159 ~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~  201 (460)
T PRK11462        159 GMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF  201 (460)
T ss_pred             HHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            88887765443322       2466655555555444443333

>PTZ00207 hypothetical protein; Provisional

Probab=99.64  E-value=1.4e-13  Score=149.69  Aligned_cols=176  Identities=11%  Similarity=0.022  Sum_probs=126.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156           24 GIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE  103 (578)
Q Consensus        24 ~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~  103 (578)
                      +|......++...+.... |+.. .....+++++|+|+.+.+++.+... ....+.+++|+++||+ |||+++.++.+++
T Consensus        26 Rw~~lva~~~~~~~~g~~-y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~  101 (591)
T PTZ00207         26 RFALLVLGAFCSICTSFM-YAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVF  101 (591)
T ss_pred             hHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            344444444444444333 3333 3445789999999999999987744 3445677889999998 9999999999999


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      .++.++..+    ........+.+.+++.|++.|+|.+...+.....+.++|| ++      |+++.++...+.++|+++
T Consensus       102 ~iG~ll~al----a~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI  170 (591)
T PTZ00207        102 CLGTLLFAL----TFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAI  170 (591)
T ss_pred             HHHHHHHHH----HhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHH
Confidence            987665410    0000112578889999999999999888888888999998 33      999999999999999975


Q ss_pred             -HHHHHHHhccccCchhHHHHHHHHHHHHHHHHH
Q 043156          184 -SVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       184 -~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  216 (578)
                       +++..+++.  .+|+..|++.++..++..++.+
T Consensus       171 ~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        171 LGSIQLAFFS--DNTSAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHH
Confidence             555555554  3577777777766554444333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.62  E-value=1.9e-13  Score=135.89  Aligned_cols=369  Identities=15%  Similarity=0.141  Sum_probs=247.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCccc
Q 043156           31 ILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCN  110 (578)
Q Consensus        31 l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~  110 (578)
                      +.++.+--+...-++ ..+..-+++++|+|.+.+|.+.+...++..+..+++.+++.|+ |-+|.+.+++++.++|.++=
T Consensus        17 Ivlia~NLR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR   94 (395)
T COG2807          17 IVLIAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIR   94 (395)
T ss_pred             HHHHHhccchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHH
Confidence            333333344444433 3345678999999999999999999999999999999999998 99999999999988775552


Q ss_pred             ccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043156          111 VFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVW  190 (578)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~  190 (578)
                                 ...+...++.+-.+.|.|.+......+.++.+.||++.       +..+++|....++|+++++.+...
T Consensus        95 -----------~~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~mtglYs~sl~~~aaLaa~lavp  156 (395)
T COG2807          95 -----------SLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLMTGLYSTSLGAGAALAAALAVP  156 (395)
T ss_pred             -----------hcccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhHHhHHHHHHHHHHHHHhhhhhH
Confidence                       22366778899999999999999999999999999874       999999999999999999999998


Q ss_pred             hcccc-CchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhh
Q 043156          191 IQDNK-GWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAI  269 (578)
Q Consensus       191 l~~~~-g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (578)
                      +.++. |||.....-+...+++++.++.-..|.+....+.                                        
T Consensus       157 la~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~----------------------------------------  196 (395)
T COG2807         157 LAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIAT----------------------------------------  196 (395)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHHHHhhhccccccccccc----------------------------------------
Confidence            88876 7999998888888887776654321111000000                                        


Q ss_pred             hcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhcc
Q 043156          270 ETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLT  349 (578)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (578)
                                       +.+          .+..-|+        +.......+.+-.....+|..+.+++.++.++.. 
T Consensus       197 -----------------~~~----------~~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~-  240 (395)
T COG2807         197 -----------------KLV----------SVRKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGL-  240 (395)
T ss_pred             -----------------ccc----------ccccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC-
Confidence                             000          0001222        1111112222334456677777888877776633 


Q ss_pred             CCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhh
Q 043156          350 MDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVA  429 (578)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~  429 (578)
                       +.+       ..+.+..+..+..+...-+...+..|..          +.........+++.++++.+.+...      
T Consensus       241 -sa~-------~aG~llsl~~l~~~~~~ll~P~la~R~~----------n~r~~~~~~~~~~l~G~~G~~~~P~------  296 (395)
T COG2807         241 -SAA-------EAGSLLSLMQLAQLPTALLIPLLARRSK----------NQRPLVVLALLLMLVGLVGLLLAPG------  296 (395)
T ss_pred             -CHH-------HhhhHHHHHHHHHHHHHHHHHHHHHHhc----------ccchHHHHHHHHHHHHHHHHHHhhh------
Confidence             221       2334444444444444444455554322          2224555666777777766665441      


Q ss_pred             hhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043156          430 RDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPK-GIKSLSTCFLWCSMALGYFFSTILVNIVN  508 (578)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~~~~ig~~lg~~~~~~~~  508 (578)
                                     +..++|    .+++|+|.+...|...+++..-+.+ +..+...|+.+....+=..+||.++|.+.
T Consensus       297 ---------------~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lh  357 (395)
T COG2807         297 ---------------QLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLH  357 (395)
T ss_pred             ---------------hHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHH
Confidence                           223334    3778999999888888887765544 44556677777777777888999999998


Q ss_pred             ccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccc
Q 043156          509 SATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSR  555 (578)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~  555 (578)
                      +.+                 ++|+..+..++...++..++-+...|+
T Consensus       358 Da~-----------------gsw~~~~~~l~~~~i~m~i~Gl~a~r~  387 (395)
T COG2807         358 DAT-----------------GSWSAPLVLLALATLLMLIFGLRAGRN  387 (395)
T ss_pred             Hhc-----------------CChHHHHHHHHHHHHHHHHHHhhcchh
Confidence            644                 234445666666666666665555543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.62  E-value=1.5e-14  Score=149.67  Aligned_cols=393  Identities=10%  Similarity=0.011  Sum_probs=222.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc-
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF-  104 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~-  104 (578)
                      +..+.+....++..+++-...++++.+++++.|+|.+++|.+.+...+...+.+|+.|.++||. |.||-++..+.+.. 
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~   85 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL   85 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence            4566666666666666666679999999999999999999999999999999999999999997 98887655443322 


Q ss_pred             -cC-CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          105 -LP-PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       105 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                       .+ .+..+      +......+   +.++.++.++..+....+... +.|.+-++..   ++.+-=+|-...-..+|.+
T Consensus        86 l~~pff~~v------~~pll~~n---~~lg~iig~i~l~~~f~~~~~-~~Ea~~er~s---r~~~feYG~~R~wGSig~a  152 (412)
T PF01306_consen   86 LFGPFFIYV------FGPLLQSN---FWLGAIIGGIYLGLVFNAGVP-LSEAYAERVS---RRNGFEYGRARMWGSIGFA  152 (412)
T ss_dssp             TCHHHHHHT------HHHHHHTT----HHHHHHTTTTTTTTTTTHHH-HHHHHHHHHH---HHHSS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHH------HHHHHHHH---HHHHHHHHHHHHHHHHcccch-HHHHHHHHHH---HHhcCCcchHHHHhhHHHH
Confidence             11 11100      00000111   223333334444443333333 2244443321   1233344557778899999


Q ss_pred             HHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhc
Q 043156          183 ISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEIN  262 (578)
Q Consensus       183 ~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (578)
                      ++..++|++.+ .+-+..|++.....++..++.+..++....+.+..                       +..    +  
T Consensus       153 i~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~-----------------------~~~----~--  202 (412)
T PF01306_consen  153 IASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA-----------------------DAL----G--  202 (412)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS-----------------------TTS----S--
T ss_pred             HHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh-----------------------ccc----c--
Confidence            99999999876 45678888876655444444444332211110000                       000    0  


Q ss_pred             hhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccch-
Q 043156          263 MDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQT-  341 (578)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-  341 (578)
                                    .+.                       .+.+..+...+...|+....+.+.......|..+.|..+ 
T Consensus       203 --------------~~~-----------------------~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~  245 (412)
T PF01306_consen  203 --------------AKK-----------------------DKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPI  245 (412)
T ss_dssp             --------------S-----------------------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------cCC-----------------------CCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          000                       000000000011112333333344444445555544333 


Q ss_pred             hhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHH
Q 043156          342 FSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIF  421 (578)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~  421 (578)
                      ++.....  +...+   +...+.+.++..+.=.+...+..++.+|.+.|           +.+.++..++++=.+.+++.
T Consensus       246 y~~~~f~--~~~~g---~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k-----------~~Lllag~i~~iRi~~~~~~  309 (412)
T PF01306_consen  246 YFASFFQ--SAGQG---NQMYGYLWSVQVFLEALMMFFSPWLINRIGAK-----------NLLLLAGVIMAIRIIGSGFA  309 (412)
T ss_dssp             HHHHTSS--SHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------HHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHhc--ccccC---hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH-----------hHHHHHHHHHHHHHHHHhhh
Confidence            3322211  11111   01122333444444455555566666666666           45666666666666666664


Q ss_pred             HHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHH-HHHHHHHHHHHH
Q 043156          422 EVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCF-LWCSMALGYFFS  500 (578)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig~~lg  500 (578)
                      +                        +++++++.=.+.++-..+......-|+.+.+|++..++...+ .+++.++|..+.
T Consensus       310 ~------------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~  365 (412)
T PF01306_consen  310 T------------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL  365 (412)
T ss_dssp             -------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred             c------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4                        677777777888888888899999999999999999888887 478889999999


Q ss_pred             HHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 043156          501 TILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYN  557 (578)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~  557 (578)
                      +.+.|.+.+                  +-+++..|++.+.+.++..++..+..++.+
T Consensus       366 s~~~G~lyd------------------~~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  366 SPLAGYLYD------------------RIGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             hhhHHhhHh------------------hcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            999888763                  235667788888888877777777766544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.61  E-value=5.5e-14  Score=150.14  Aligned_cols=151  Identities=15%  Similarity=0.082  Sum_probs=127.3

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHH
Q 043156           54 NGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVAL  133 (578)
Q Consensus        54 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (578)
                      .++++....+.+.+.+.|.+++.++.+++|+|.||+ .-.+.+....+.+.+-.++.          ....+.+.+++.|
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~----------~~~~s~~~~ialr  141 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLT----------AAVHSFPGLIALR  141 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHH----------HHHhhhHHHHHHH
Confidence            367888999999999999999999999999999998 87777777766666322221          2256888999999


Q ss_pred             HHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc------cccCchhHHHHHHHH
Q 043156          134 YLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQ------DNKGWDRGFGLSSVA  207 (578)
Q Consensus       134 ~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~------~~~g~~~~f~i~~~~  207 (578)
                      ++.|+.++..+|+...+++.+|.+++      |+..+++++....+|.++|.+++..+.      ...||||.|.+.+++
T Consensus       142 ~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i  215 (495)
T KOG2533|consen  142 FLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVI  215 (495)
T ss_pred             HHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHH
Confidence            99999999999999999999999987      999999999999999999999987752      346899999999988


Q ss_pred             HHHHHHHHHhcCCC
Q 043156          208 VFLATIIFAAGLPL  221 (578)
Q Consensus       208 ~~~~~~~~~~~~~~  221 (578)
                      .+...++.++..+.
T Consensus       216 ~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  216 TLVLGIVVFFFLPD  229 (495)
T ss_pred             HHHHHheEEEEecC
Confidence            77766665555443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.60  E-value=3.6e-13  Score=141.62  Aligned_cols=387  Identities=11%  Similarity=0.042  Sum_probs=203.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCccc
Q 043156           31 ILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCN  110 (578)
Q Consensus        31 l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~  110 (578)
                      +....++..+.+-...++++.|+++ .|+|.+|+|.+.+...+...+.+++.|+++||...+||.+.+..++.++..+..
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555566899999975 689999999999999999999999999999998446777766655554322221


Q ss_pred             ccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHH-HH
Q 043156          111 VFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTL-IV  189 (578)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l-~~  189 (578)
                                ....+++.+++..++..+......|...++.-+....        +++-+|-...-..+|-+++... ++
T Consensus        86 ----------~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iRlwGSiGf~~~~~~~~~  147 (400)
T PF03825_consen   86 ----------AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIRLWGSIGFIVAALAFGG  147 (400)
T ss_pred             ----------HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcchhhhhHHHHHHHHHHHH
Confidence                      2234555566666666666666666665555555442        3444555555556666555333 22


Q ss_pred             Hhcccc---CchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhh
Q 043156          190 WIQDNK---GWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKE  266 (578)
Q Consensus       190 ~l~~~~---g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (578)
                      ++....   +....+++.+...++.....+. .++.+.++..+ +.                      .    +      
T Consensus       148 ~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~-~~----------------------~----~------  193 (400)
T PF03825_consen  148 LLGGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAK-ES----------------------V----K------  193 (400)
T ss_pred             HHHhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccccccC-CC----------------------c----c------
Confidence            332222   2334556655443332222222 22222110000 00                      0    0      


Q ss_pred             hhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhh
Q 043156          267 AAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQ  346 (578)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (578)
                                  +....                   +.++     -.++++-+...+..+..+.. ...+..+.+.+.++
T Consensus       194 ------------~~~~~-------------------~~~~-----llk~~~~~~Fll~~~l~~~~-~~~~~~f~~~yl~~  236 (400)
T PF03825_consen  194 ------------KLLGL-------------------DALK-----LLKNPRFLVFLLAAFLIGIS-HAAYYTFFSIYLQE  236 (400)
T ss_pred             ------------cccch-------------------HHHH-----HhcCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence                        00000                   0000     00111111111111111111 11222222222222


Q ss_pred             hccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHH
Q 043156          347 GLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRK  426 (578)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~  426 (578)
                      ......       ...+..+++..+.=+.+..+.+++    .+|.       +..+.+.++.+...+=..+.+...    
T Consensus       237 ~gg~~~-------~~~g~~~~l~~~aEi~~f~~~~~~----~~r~-------g~~~ll~~a~~~~~vR~~l~a~~~----  294 (400)
T PF03825_consen  237 LGGYSG-------STIGILWALGVVAEIPFFFFSGRF----LKRF-------GIKWLLLLALVAYAVRWLLYAYFS----  294 (400)
T ss_pred             cccchh-------hHHHHHHHHHHHHHHHHHHHHHHH----HHhc-------CHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            111000       011122222223223333334444    4443       333566667766666665555542    


Q ss_pred             hhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHH-HHHHHHHHHHHHH
Q 043156          427 DVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCS-MALGYFFSTILVN  505 (578)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~-~~ig~~lg~~~~~  505 (578)
                                     ++.......+.+..++.|+..++.......++.+.+|++.|++++++++.. .++|..+|+.+.|
T Consensus       295 ---------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG  359 (400)
T PF03825_consen  295 ---------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGG  359 (400)
T ss_pred             ---------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                           000111122233345789999999999999999999999999999998765 6799999999999


Q ss_pred             hhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 043156          506 IVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRY  556 (578)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~  556 (578)
                      .+.+....          +  .--.+...|.+.+++.++..++++++.|+.
T Consensus       360 ~l~~~~g~----------~--~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  360 WLYDAFGA----------R--GMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHhcc----------h--hhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            88742200          0  001234466777777777777777775543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.56  E-value=2.9e-12  Score=137.43  Aligned_cols=403  Identities=13%  Similarity=0.070  Sum_probs=220.7

Q ss_pred             chhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC----------------------------CC-HHHHHHHHHHHHHH
Q 043156           25 IKTSLLILAAFGFEN-LATIALGVNLVTYFNGVLH----------------------------LD-LAEAANQVTNYMGT   74 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~-~~~~~~~~~l~~yl~~~lg----------------------------~s-~~~~~~~~~~~~~~   74 (578)
                      +|+++...+-.+.++ +....+..+.|.|+++...                            .+ .+..+...++..+.
T Consensus         3 r~~i~~W~lyd~ans~f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l~   82 (477)
T PF11700_consen    3 RREIWSWALYDWANSPFATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGLL   82 (477)
T ss_pred             hhHHHHHHHhHhhcccchhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHHH
Confidence            456666666666654 3445556778888887641                            11 22346778888889


Q ss_pred             HHHHHhHHHHHhhhccchhhhhhhhhhhhc-cCCcccccCCCCCccccccchhHHHHHHHHHHHHhcccccccccccccc
Q 043156           75 SYILSIVVALLADAFIGRFKAVLISGSVEF-LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGAD  153 (578)
Q Consensus        75 ~~~~~~~~G~laD~~~Grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~  153 (578)
                      ..+..|+-|-++|+- |+||-++....+.. +...++        ......+.....+..++..++.+.......+++.|
T Consensus        83 ~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l--------~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~  153 (477)
T PF11700_consen   83 QALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALL--------WFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPD  153 (477)
T ss_pred             HHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHH--------HHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            999999999999997 88887776554444 222221        11122333333344444556666667778899999


Q ss_pred             CCCCCChHHHhh---------------------hhhHHHHHHHHHHHHHHHHHHHHHHhcc--------ccCchhHHHHH
Q 043156          154 QFDEKDPIEARQ---------------------MSSFFNLLFLAVCIGGAISVTLIVWIQD--------NKGWDRGFGLS  204 (578)
Q Consensus       154 ~~~~~~~~~~~~---------------------R~~~~~~~~~~~~lG~~~~p~l~~~l~~--------~~g~~~~f~i~  204 (578)
                      +.++++. +++.                     |++..+.-+...++|+++.-.+.-.+..        ..+.|..+.+.
T Consensus       154 la~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~  232 (477)
T PF11700_consen  154 LARPEPR-VRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIV  232 (477)
T ss_pred             hcCCChh-hhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHH
Confidence            9988751 0000                     2788888777888888887666544321        12347777777


Q ss_pred             HHHHHHHHH-HHHhcCCCce-ecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccch
Q 043156          205 SVAVFLATI-IFAAGLPLYR-FQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRF  282 (578)
Q Consensus       205 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (578)
                      ++..++..+ .+++.+++.+ +..|...+.+..-.+-+.                                         
T Consensus       233 a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-----------------------------------------  271 (477)
T PF11700_consen  233 ALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLW-----------------------------------------  271 (477)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHH-----------------------------------------
Confidence            666443333 3333333221 111111011100000000                                         


Q ss_pred             hhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccc---hhhhhhhccCCCCCCCcee
Q 043156          283 LDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQ---TFSIQQGLTMDTSVTTSFH  359 (578)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  359 (578)
                                                  +..++.|+......+.+...++.-......   ..+.....+++.       
T Consensus       272 ----------------------------~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~-------  316 (477)
T PF11700_consen  272 ----------------------------RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMST-------  316 (477)
T ss_pred             ----------------------------HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCH-------
Confidence                                        001111111111111111111111111111   122222112221       


Q ss_pred             eCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCC
Q 043156          360 IPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIP  439 (578)
Q Consensus       360 ~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (578)
                      .....+..+..+..+++..+.+++.+|++.|.         .+.+.+++++..+ ..+.+...... +   ..|      
T Consensus       317 ~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~---------~~~l~~~l~~~~~-i~~~g~~G~~~-~---~~g------  376 (477)
T PF11700_consen  317 TQLIVFGLVVQIVAIIGALLFGWLQDRFGPKT---------KRTLLISLILWII-IPLYGLFGFWP-S---FFG------  376 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch---------hHHHHHHHHHHHH-HHHHHHHHhhh-c---ccC------
Confidence            11112333445666677777777776666551         0222223322211 11112210000 0   000      


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCC
Q 043156          440 VVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGG  519 (578)
Q Consensus       440 ~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~  519 (578)
                           ..+.+.+.+.-++.|+..+..++..-++..++.|++..+...|++.+.....+.+||.+.+.+.+.|        
T Consensus       377 -----~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t--------  443 (477)
T PF11700_consen  377 -----LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT--------  443 (477)
T ss_pred             -----cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence                 1133334444567889999999999999999999999999999999999999999999999988655        


Q ss_pred             CcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccc
Q 043156          520 WLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSR  555 (578)
Q Consensus       520 ~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~  555 (578)
                               ++.++.+..+.++.++++++.+.+..+
T Consensus       444 ---------g~~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  444 ---------GSQRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             ---------CCchhHHHHHHHHHHHHHHHHhhccch
Confidence                     234577888999999999888666443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.50  E-value=3.4e-13  Score=142.45  Aligned_cols=178  Identities=13%  Similarity=0.050  Sum_probs=133.5

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      ++++|..+..+...+.....++....+.|.|+++++|++..+.+.+.+...++..++.+++|+++||+ ||||.+.++.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~  290 (393)
T PRK15011        212 RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAV  290 (393)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHH
Confidence            34555544444444444445555567788999999999999999998888888888999999999998 99998877655


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      ...+.....          ....+...+++.+++.+++.|...+....+..|.+|++       |+++.++++...++|.
T Consensus       291 ~~~~~~~~~----------~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-------~g~~~~~~~~~~~lg~  353 (393)
T PRK15011        291 AGVCFYAGM----------LMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-------AGSATTLYTNTSRVGW  353 (393)
T ss_pred             HHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------cchHHHHHHHHHHHHH
Confidence            444221111          12234555666777777777766666667788988853       7999999999999999


Q ss_pred             HHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHh
Q 043156          182 AISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      .++|.++|++.+++||+..|++.+++.+++++..+.
T Consensus       354 ~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        354 IIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999889999999888777777666554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.48  E-value=1.2e-11  Score=129.51  Aligned_cols=365  Identities=11%  Similarity=0.054  Sum_probs=228.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhhhh-hhhh
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAF---IGRFKAV-LISG  100 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~~~-~~~~  100 (578)
                      .|+-..-....+..++.+-.+..++..|+++..|++...+|.+..+.-+.-.+.-|+.|.++||.   +||+|-. +++.
T Consensus        11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~   90 (467)
T COG2211          11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA   90 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence            45555566678888888888899999999999999999999999999999999999999999974   2776644 4554


Q ss_pred             hhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHH
Q 043156          101 SVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIG  180 (578)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG  180 (578)
                      +.+++...++..+|.    ........-.++-..+.++++.+......++.+|+.+..+     +|.+..++-..+.++|
T Consensus        91 ip~~i~~~l~F~~p~----~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~s~R~~~~~~g  161 (467)
T COG2211          91 IPFAIVAVLLFITPD----FSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLTSWRMVFASLG  161 (467)
T ss_pred             HHHHHHHHHHHcCCC----cccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHHHHHHHHHHHH
Confidence            555543333311111    0112334445566777889999999999999999998765     4999999999999999


Q ss_pred             HHHHHHHHHHhcc-------ccCchhHHHHHHHHHHHHHHHHHhcCC-CceecCCCCcchHHHHHHHHHHHHHhcccCCC
Q 043156          181 GAISVTLIVWIQD-------NKGWDRGFGLSSVAVFLATIIFAAGLP-LYRFQVVQGSSVLIEIIQVYVAAIRNRKLELP  252 (578)
Q Consensus       181 ~~~~p~l~~~l~~-------~~g~~~~f~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (578)
                      ..+...+.+.+..       ..||+..-.+.+++..+..++.++..+ |..+..+.+ +.                    
T Consensus       162 ~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~-~~--------------------  220 (467)
T COG2211         162 GLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTK-TG--------------------  220 (467)
T ss_pred             HHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCc-cc--------------------
Confidence            7766665544432       346776666666655555544443322 221111111 00                    


Q ss_pred             CCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHH
Q 043156          253 EDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVM  332 (578)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~  332 (578)
                                               ..                       .++++.. ......|.++..+...+   ++
T Consensus       221 -------------------------~~-----------------------~~~~~~~-~~~~~Nrp~~~~l~~~l---~~  248 (467)
T COG2211         221 -------------------------VK-----------------------LKLKDSF-LLIFKNRPLLLLLLMNL---LL  248 (467)
T ss_pred             -------------------------cc-----------------------ccHHHHH-HHHHccchHHHHHHHHH---HH
Confidence                                     00                       0000000 00001122222222222   22


Q ss_pred             HHhhhccchhhhhhhc-cCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHH
Q 043156          333 TLCLAQLQTFSIQQGL-TMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLS  411 (578)
Q Consensus       333 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~  411 (578)
                      +...+...+...++.. ++++.     +..+...........++..++..++..+++||           +...+|.++.
T Consensus       249 ~~~~~i~~s~~~yy~~y~lg~~-----~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----------~~~~~~~~~~  312 (467)
T COG2211         249 FIAFNIRGSIMVYYVTYVLGDP-----ELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----------KLFLIGLLLL  312 (467)
T ss_pred             HHHHHHHhhhhheeEEEEcCCh-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----------HHHHHHHHHH
Confidence            2222222222222111 12211     12222333334455555577888887777777           4677788888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccC-------CchhhHH
Q 043156          412 CISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEA-------PKGIKSL  484 (578)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~-------P~~~rg~  484 (578)
                      .++.+.+.+..                      ..+.++.++..++.++|.+...+..+++..+.+       -++..|.
T Consensus       313 ~i~~~~~~f~~----------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi  370 (467)
T COG2211         313 AVGYLLLYFTP----------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGI  370 (467)
T ss_pred             HHHHHHHHhhc----------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhh
Confidence            87777766643                      234556666668888999999999999998864       4566788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc
Q 043156          485 STCFLWCSMALGYFFSTILVNIVNS  509 (578)
Q Consensus       485 ~~g~~~~~~~ig~~lg~~~~~~~~~  509 (578)
                      .-+...+++=+|..++..+.+.+..
T Consensus       371 ~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         371 VYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999888763

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.47  E-value=5.4e-13  Score=145.08  Aligned_cols=182  Identities=16%  Similarity=0.137  Sum_probs=133.0

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhh
Q 043156           23 GGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV  102 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~  102 (578)
                      ++++.........++....+|++..++|.|+++.+|++..+.+.......++..++.+++|+++||+ |||+++.++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~  325 (490)
T PRK10642        247 KHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVA  325 (490)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence            3455555455555667788899999999999999999998888888888889999999999999998 999998887654


Q ss_pred             hccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                      ..+.....       .......+...+++++++.+++.+...+....++.|.+|++.      |++++++.+....+++.
T Consensus       326 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~~~~~~~~g~  392 (490)
T PRK10642        326 LFVLAIPA-------FILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAAFNISVLVAG  392 (490)
T ss_pred             HHHHHHHH-------HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHHHHHHHHHHH
Confidence            33221110       000122345667778888887777666677788889999987      99999985555667778


Q ss_pred             HHHHHHHHhcccc-CchhHHHHHHHHHHHHHHHHHhc
Q 043156          183 ISVTLIVWIQDNK-GWDRGFGLSSVAVFLATIIFAAG  218 (578)
Q Consensus       183 ~~p~l~~~l~~~~-g~~~~f~i~~~~~~~~~~~~~~~  218 (578)
                      ++|.+.+++.+.. +|+.++++..+..+++++..++.
T Consensus       393 ~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        393 LTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            8999999987754 47777766555555555544443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.44  E-value=1.6e-11  Score=125.16  Aligned_cols=375  Identities=16%  Similarity=0.095  Sum_probs=220.0

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hhhhhh-hhhhhhccCCcccccCCCCCccccc----
Q 043156           53 FNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIG-----RFKAVL-ISGSVEFLPPPCNVFDPTAGCKKIE----  122 (578)
Q Consensus        53 l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----rr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----  122 (578)
                      +..|++++..-.+.+++...+... ..+..|+.||+. +     ||.-++ .|..+++.+..+..+   .......    
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~---a~~~l~~~~~~   80 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPF---ALLLLAESGQQ   80 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHH---HHHHHcccccc
Confidence            456899999999999999888776 578889999997 6     554443 444444432222110   0000011    


Q ss_pred             ---cc--hhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q 043156          123 ---GS--DAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGW  197 (578)
Q Consensus       123 ---~~--~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~  197 (578)
                         ..  ......+...+.|+|.+...++..++++|..|+++      |++..++.+.+.-+|.+++..+.+.+.+.++-
T Consensus        81 ~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~  154 (403)
T PF03209_consen   81 SSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP  154 (403)
T ss_pred             cccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence               11  22234455556788888888899999999999987      99999999999999999999999999887764


Q ss_pred             hhHHHHH---HH-HHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhccc
Q 043156          198 DRGFGLS---SV-AVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEF  273 (578)
Q Consensus       198 ~~~f~i~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (578)
                      .....+.   ++ ..++..+..+-..++.++..+..                       +                    
T Consensus       155 ~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~-----------------------~--------------------  191 (403)
T PF03209_consen  155 ERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAA-----------------------E--------------------  191 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCC-----------------------C--------------------
Confidence            3332222   22 22233333332222222211000                       0                    


Q ss_pred             CCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhccCCCC
Q 043156          274 LPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTS  353 (578)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (578)
                         .++..+.+.....                   ..+  .+.+++  ...++.....+++.-....++=   ..-...+
T Consensus       192 ---~~~~~f~~a~~~~-------------------~~~--~~a~~f--~~fl~l~t~a~~~QD~iLEPyg---g~Vfgms  242 (403)
T PF03209_consen  192 ---RPRPPFREAWRQV-------------------WAS--PQARRF--FVFLFLGTLAFFMQDVILEPYG---GEVFGMS  242 (403)
T ss_pred             ---CCCccHHHHHHHH-------------------HhC--CChhHH--HHHHHHHHHHHHhhHHHcCCch---hHHcCCC
Confidence               0001111110000                   000  011222  2222233333333222221111   0011111


Q ss_pred             CCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 043156          354 VTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHN  433 (578)
Q Consensus       354 ~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (578)
                      ++     .+..++.....+.++...+.+++..|-.++          .+....|.....+++.......           
T Consensus       243 v~-----eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~----------~~~a~~G~~~~~~~f~lii~a~-----------  296 (403)
T PF03209_consen  243 VG-----ETTRLTAFWGGGTLLGMLLAGFLLSRRLGK----------KRTAALGCLLGALAFALIILAG-----------  296 (403)
T ss_pred             HH-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----------hHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            11     122344555566777777777776432222          1344556666666666554433           


Q ss_pred             ccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 043156          434 MLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRG  513 (578)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~  513 (578)
                                ..-+.+.+....+++|++.++......+...+..+++..|..+|.|...+.++..++..+.+.+.+... 
T Consensus       297 ----------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~-  365 (403)
T PF03209_consen  297 ----------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR-  365 (403)
T ss_pred             ----------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence                      122456777788999999999999999999999999999999999999999999999999998876441 


Q ss_pred             ccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 043156          514 ITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSS  554 (578)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  554 (578)
                            ++. ++-....|..+|.+-+++.++++.+..-+.+
T Consensus       366 ------~~~-~~~~~~aY~~VF~lEa~ll~~a~~ll~~l~~  399 (403)
T PF03209_consen  366 ------ALF-GNSPALAYGVVFALEAVLLLAALVLLGRLDR  399 (403)
T ss_pred             ------Hhc-cCCcchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                  111 1101246778888888888877776655443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.42  E-value=1.1e-13  Score=131.93  Aligned_cols=378  Identities=14%  Similarity=0.168  Sum_probs=218.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchh
Q 043156           47 VNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDA  126 (578)
Q Consensus        47 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (578)
                      .-+..+++.+.++..++..++.+.|+.-..+.+.++|++.||..|-|..-++-+....+|.++.      .+ -.....+
T Consensus        64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliF------a~-Ggi~~aF  136 (459)
T KOG4686|consen   64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIF------AA-GGISHAF  136 (459)
T ss_pred             hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHH------Hh-chHHHHH
Confidence            4467788888888888999999999999999999999999998787765544444444443332      01 1335678


Q ss_pred             HHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHH
Q 043156          127 ALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSV  206 (578)
Q Consensus       127 ~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~  206 (578)
                      +....+|++.|+|.-....+.+.+...+|..+|      ...++|+......+|..+--.+.+++.+..+   .++=...
T Consensus       137 w~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~---~~~~~~g  207 (459)
T KOG4686|consen  137 WTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMG---RMFPGVG  207 (459)
T ss_pred             HHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHH---Hhcccch
Confidence            899999999999988888889999999999998      8999999999999999888788888876533   0110000


Q ss_pred             HHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHh
Q 043156          207 AVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKA  286 (578)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (578)
                      -..+++...+-. +..+       ..+       ..+....+.   ++..+.              .+         .+.
T Consensus       208 hT~LG~~l~~~~-~tc~-------~sl-------ical~lg~~---D~rAer--------------il---------h~e  246 (459)
T KOG4686|consen  208 HTLLGLWLCFEV-KTCK-------QSL-------ICALSLGLS---DDRAER--------------IL---------HLE  246 (459)
T ss_pred             HHHHHHHHHHHH-HHHH-------HHH-------HHHHHhhhh---hhHHHH--------------HH---------hhh
Confidence            111111110000 0000       000       000000000   000000              00         000


Q ss_pred             hhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhh---ccchhhhhhhccCCCCCCCceeeCCC
Q 043156          287 AIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLA---QLQTFSIQQGLTMDTSVTTSFHIPPA  363 (578)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (578)
                      .-..          ...|-    .+++.+.+.  ....+....+.++....   .....+.+.-....       ....+
T Consensus       247 ~g~~----------Ge~pk----Ltdv~~f~p--pfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS-------~~~a~  303 (459)
T KOG4686|consen  247 EGFL----------GEEPK----LTDVNTFYP--PFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLS-------AVSAG  303 (459)
T ss_pred             cCcc----------cCCcc----cccccccCc--cHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCC-------hhhcc
Confidence            0000          00010    011111111  11222233333333322   22223332211111       11122


Q ss_pred             cccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCC
Q 043156          364 SLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQP  443 (578)
Q Consensus       364 ~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (578)
                      -+.+..........|+.+.+.|+++++.          +.+..+.+...++-..+.+..                     
T Consensus       304 ~i~s~vy~Isav~spvfg~i~Dk~G~n~----------~wv~~a~~~tl~~H~~l~Ft~---------------------  352 (459)
T KOG4686|consen  304 NILSTVYGISAVLSPVFGAISDKYGFNL----------WWVASACILTLLGHSGLFFTF---------------------  352 (459)
T ss_pred             chhhhhhhhhhhhhhhHHHhHhhhccee----------hhHHHHHHHHHHHhhhHHhhh---------------------
Confidence            2333333445667899999999988874          344444444444444444421                     


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCC
Q 043156          444 LPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAG  523 (578)
Q Consensus       444 ~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~  523 (578)
                        .++   ...+.++|++..+..-..|-.+..++|++.-|++-|+.+...++|-.+.+.+.+++.+-.      +++   
T Consensus       353 --lsP---y~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~------g~y---  418 (459)
T KOG4686|consen  353 --LSP---YTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD------GSY---  418 (459)
T ss_pred             --ccH---HHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC------Cch---
Confidence              222   234567788888877888889999999999999999999999999999999999887311      111   


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 043156          524 NNINRNHLNLFFWLLSALSFINFSVYLFMSS  554 (578)
Q Consensus       524 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  554 (578)
                           -+.+.+|...+.+++....+.+...+
T Consensus       419 -----~~le~ffl~~~~~aL~svgil~~~N~  444 (459)
T KOG4686|consen  419 -----DNLEAFFLIIGLMALTSVGILFYLNK  444 (459)
T ss_pred             -----hhHHHHHHHHHHHHHHHHHHHhheec
Confidence                 12335566666666665555555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.41  E-value=1.5e-12  Score=137.70  Aligned_cols=173  Identities=12%  Similarity=0.049  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCC
Q 043156           35 FGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDP  114 (578)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~  114 (578)
                      .....+.+.....+++.|+.+ .|+  .+.+...+.+.++..++.++.|+++||+ ||||.+.++.++..++.++.    
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~----  296 (399)
T PRK05122        225 LALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLL----  296 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHH----
Confidence            334455666667788888764 465  3456677788888899999999999998 99999888877666543332    


Q ss_pred             CCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 043156          115 TAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDN  194 (578)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~  194 (578)
                            ....+...+++.+++.|++.+...|.....+.|.+|+++      |++++++++...++|..++|.+.|++.+.
T Consensus       297 ------~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  364 (399)
T PRK05122        297 ------WLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITGPLAGLVASW  364 (399)
T ss_pred             ------HHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  223455566778888999998888887778888888765      99999999999999999999999999998


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHhcCCCceecCC
Q 043156          195 KGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVV  227 (578)
Q Consensus       195 ~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~  227 (578)
                      .||++.|++.+++.+++.+..+...++.+++.|
T Consensus       365 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T PRK05122        365 FGYPSIFLAAALAALLGLALTWLLYRRAPRAVP  397 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence            899999999888877777666665555444433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.39  E-value=2e-12  Score=139.84  Aligned_cols=177  Identities=14%  Similarity=0.097  Sum_probs=132.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      +.+|.+.+..++....+++...++|.|+++++|+|..++++..+.+.++..++.+++|+++||+ |||+.+.+...+...
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            4577788888888888888889999999999999999999999999999999999999999998 999877665443332


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH-HHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI-GGAIS  184 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l-G~~~~  184 (578)
                      +..+.        ......+.....+.+++.|+..............|.+|++.      |+++.|+.+...++ |+.++
T Consensus       337 ~~~~~--------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~~g~l~g~~~~  402 (467)
T PRK09556        337 IFTLG--------VYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGTFAYLFGDSFA  402 (467)
T ss_pred             HHHHH--------HHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHHHHHHHhHHHH
Confidence            21111        00122344445566666665432222222355679999886      99999999998886 77999


Q ss_pred             HHHHHHhcc------------ccCchhHHHHHHHHHHHHHHHHHh
Q 043156          185 VTLIVWIQD------------NKGWDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       185 p~l~~~l~~------------~~g~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      |.+.|++.+            ..+|+..|++..++.+++.+..+.
T Consensus       403 ~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        403 KVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             hhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            999999998            578999998887777666555443

>PRK09952 shikimate transporter; Provisional

Probab=99.39  E-value=3.7e-12  Score=136.52  Aligned_cols=184  Identities=16%  Similarity=0.055  Sum_probs=132.8

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      +++++.........++..+.+|...++.+.|+++++|++......+.........++.++.|+++||+ ||||++..+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~  324 (438)
T PRK09952        246 LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGAL  324 (438)
T ss_pred             HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHH
Confidence            44555555555566777788898899999999999999988766666667777888899999999998 99999887766


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHH-HHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLF-LAVCIG  180 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~-~~~~lG  180 (578)
                      +..++.++..      ...........+++..++.+++.+...+...++++|.+|++.      |+.+.++.+ .+..+|
T Consensus       325 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~~~~~~lg  392 (438)
T PRK09952        325 IGTLSAFPFF------MALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGYQVASVVG  392 (438)
T ss_pred             HHHHHHHHHH------HHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHHHHHHHHH
Confidence            5443221110      000112233344445566677777777888899999999976      999999844 455689


Q ss_pred             HHHHHHHHHHhcccc--CchhHHHHHHHHHHHHHHHHHhc
Q 043156          181 GAISVTLIVWIQDNK--GWDRGFGLSSVAVFLATIIFAAG  218 (578)
Q Consensus       181 ~~~~p~l~~~l~~~~--g~~~~f~i~~~~~~~~~~~~~~~  218 (578)
                      +.++|.+.+++.+..  +|+.++.+.+++.+++.+..+..
T Consensus       393 g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        393 GGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            999999999997643  48888887777777766665543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.38  E-value=9.8e-13  Score=137.84  Aligned_cols=173  Identities=17%  Similarity=0.083  Sum_probs=133.4

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      +++++..+......++....++....+++.|+++++|.+..+.+.+.....++..++.+++|+++||+ |||+.+..+..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~  293 (394)
T TIGR00883       215 TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTV  293 (394)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHH
Confidence            34444567777777788888888889999999999999999999999999999999999999999998 99998775544


Q ss_pred             hhccCC-cccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHH-HHHHHHH
Q 043156          102 VEFLPP-PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNL-LFLAVCI  179 (578)
Q Consensus       102 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~-~~~~~~l  179 (578)
                      +..+.. .+.       .......+...++....+.+++.+...+...+++.|.+|+++      |++++++ +..+..+
T Consensus       294 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~  360 (394)
T TIGR00883       294 LAALLAVPLL-------MALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYNLAGAI  360 (394)
T ss_pred             HHHHHHHHHH-------HHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhHhHHHH
Confidence            333211 110       000112345556667777888888888889999999999887      9999998 4556678


Q ss_pred             HHHHHHHHHHHhccccC-chhHHHHHHHHH
Q 043156          180 GGAISVTLIVWIQDNKG-WDRGFGLSSVAV  208 (578)
Q Consensus       180 G~~~~p~l~~~l~~~~g-~~~~f~i~~~~~  208 (578)
                      |..++|.++|++.++.| |+..++......
T Consensus       361 g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       361 FGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            99999999999999888 887776655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.37  E-value=5.1e-12  Score=132.01  Aligned_cols=166  Identities=13%  Similarity=0.020  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCccccc
Q 043156           33 AAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVF  112 (578)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~  112 (578)
                      ...++..........+++.|+++++|.+..+.+++.+...+...++.+++|+++||+ |||+++.++.++..+...+.  
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~--  282 (375)
T TIGR00899       206 VACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGL--  282 (375)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHH--
Confidence            333343344444556788899999999999999988888778888899999999998 99999888766544222111  


Q ss_pred             CCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 043156          113 DPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQ  192 (578)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~  192 (578)
                              ....+.+.+++.+++.+++.+...+....++.|..|++       |++++++++...++|..++|.++|++.
T Consensus       283 --------~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~g~~~~g~~~  347 (375)
T TIGR00899       283 --------AADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVGWIIAGSVGGILA  347 (375)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    22345556667778888888887788788888988754       679999999999999999999999999


Q ss_pred             cccCchhHHHHHHHHHHHHHHHHH
Q 043156          193 DNKGWDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       193 ~~~g~~~~f~i~~~~~~~~~~~~~  216 (578)
                      +..||+..|++.++..+++.+...
T Consensus       348 ~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       348 ERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HhccchhHHHHHHHHHHHHHHHHh
Confidence            988999999998887777666544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03699 putative transporter; Provisional

Probab=99.37  E-value=4.8e-12  Score=133.72  Aligned_cols=171  Identities=13%  Similarity=0.133  Sum_probs=132.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      +.++.+.+..++....++.+..++|.|+++++|+|..+.+.+.+.+.++..++.+++|+++||+ |||+++.....+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            4556666666666677788889999999999999999999999999999999999999999998 999988876655443


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      ...+.          ....+...+.+..++.|++.+...+...+...|..|.+       +++..+..+...++|..++|
T Consensus       284 ~~~~~----------~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~g~~i~p  346 (394)
T PRK03699        284 LMYLF----------VNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFILTCGTIGTMLTF  346 (394)
T ss_pred             HHHHH----------HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHHHhhhHHHHHHH
Confidence            32221          12234444555666777777777777777777877644       56778888888899999999


Q ss_pred             HHHHHhccccCchhHHHHHHHHHHHHHHH
Q 043156          186 TLIVWIQDNKGWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       186 ~l~~~l~~~~g~~~~f~i~~~~~~~~~~~  214 (578)
                      .+.|++.+..|++..|++.+++.+++.+.
T Consensus       347 ~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        347 VVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            99999999899999998877766655443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.36  E-value=5e-12  Score=131.65  Aligned_cols=170  Identities=14%  Similarity=0.097  Sum_probs=130.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      ..+.+....+...........+.+.|. +++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+.+.++.++..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  283 (377)
T TIGR00890       206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG  283 (377)
T ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence            344444444555555555555666664 67899999999999999999999999999999998 9999998888777655


Q ss_pred             CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVT  186 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~  186 (578)
                      .++.        ..........++....+.+++.+...+..+.++.|.+|+++      |++.+++++...++|..++|.
T Consensus       284 ~~~~--------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~~~~  349 (377)
T TIGR00890       284 MAAM--------LFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAKAVAGIFGGL  349 (377)
T ss_pred             HHHH--------HHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHHHHHHHHHHH
Confidence            4332        00111122334455667788888877888889999999887      999999999999999999999


Q ss_pred             HHHHhccccCchhHHHHHHHHHHHHH
Q 043156          187 LIVWIQDNKGWDRGFGLSSVAVFLAT  212 (578)
Q Consensus       187 l~~~l~~~~g~~~~f~i~~~~~~~~~  212 (578)
                      +.|++.++.||++.|.+.+++.++++
T Consensus       350 ~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       350 IASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            99999999999999988877665543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.35  E-value=9.6e-12  Score=127.95  Aligned_cols=174  Identities=24%  Similarity=0.229  Sum_probs=147.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhh-hhhhhhhhhc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFK-AVLISGSVEF  104 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~-~~~~~~~~~~  104 (578)
                      |..+...+..+.....+.....+.+.++.+.+|.+..+.+++.+...++..++.++.|+++||+ |||+ .+.++.++..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~  253 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA  253 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence            4455556666677777777788899999888899999999999999999999999999999998 9999 8888888777


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      ++.++.          ....+....++..++.+++.+...+....++.|..|+++      |++.+++++...++|..++
T Consensus       254 i~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~  317 (352)
T cd06174         254 LGLLLL----------ALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNTFGSLGGALG  317 (352)
T ss_pred             HHHHHH----------HHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHHHHHHHHHHH
Confidence            554443          223446677888999999999999999999999999876      9999999999999999999


Q ss_pred             HHHHHHhccccCchhHHHHHHHHHHHHHHHHH
Q 043156          185 VTLIVWIQDNKGWDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       185 p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  216 (578)
                      |.+.+++.+..+|+..|.+.+++.+++.+...
T Consensus       318 ~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         318 PLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            99999999888999999998888777665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.32  E-value=9.5e-12  Score=139.47  Aligned_cols=135  Identities=13%  Similarity=0.018  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhcccccc
Q 043156           66 NQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKA  145 (578)
Q Consensus        66 ~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~  145 (578)
                      ....+..++..++.+++|+++||+ |||+++.++.++.+++.++.          ....+...+++.+++.++..++.++
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~----------~~~~s~~~ll~~~~l~g~~~~~~~~  667 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFL----------SFGNSESAMIALLCLFGGLSIAAWN  667 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHH----------HHHccHHHHHHHHHHHHHHHHHHHH
Confidence            334556688899999999999998 99999999888877554432          2233445566667777877777888


Q ss_pred             ccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhc
Q 043156          146 ALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAG  218 (578)
Q Consensus       146 ~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~  218 (578)
                      ...++++|++|++.      |++++|+.+...++|+++||.+++++.+. +...+|++.+++.+++.++..+.
T Consensus       668 ~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L  733 (742)
T TIGR01299       668 ALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKL  733 (742)
T ss_pred             HHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC
Confidence            88999999999986      99999999999999999999999988764 45677887777766665554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.32  E-value=9.5e-12  Score=131.72  Aligned_cols=177  Identities=12%  Similarity=0.004  Sum_probs=131.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLA---EAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~---~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      ++..+.++...+........+.++++.|+.+..+....   ..+.+.+...++..++.++.|+++||+ |||+++.++.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~  296 (408)
T PRK09874        218 PKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALI  296 (408)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHH
Confidence            33333333333444444445567777887765443222   245566667778888899999999998 99999988877


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      +..++.++.          ....+.+.+++.+++.|++.+...|...+++.+..|+++      |++.+++++...++|.
T Consensus       297 ~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~  360 (408)
T PRK09874        297 FSVLLLIPM----------SFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGN  360 (408)
T ss_pred             HHHHHHHHH----------HHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHH
Confidence            665433322          223456667788889999999988988888888888776      9999999999999999


Q ss_pred             HHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhc
Q 043156          182 AISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAG  218 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~  218 (578)
                      .+||.++|++.+++||+..|++.+++.+++.+..+..
T Consensus       361 ~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        361 VTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888877766655443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.32  E-value=2.7e-11  Score=126.59  Aligned_cols=173  Identities=15%  Similarity=0.000  Sum_probs=129.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhh--h------h
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKA--V------L   97 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~--~------~   97 (578)
                      |..+..+...++....+.....+.+.|+++++|.+..+.+++.+...++..++.+++|+++||+ |||+.  .      .
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4566777778888888888889999999999999999999999999999999999999999998 99861  1      1


Q ss_pred             hhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHH
Q 043156           98 ISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAV  177 (578)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~  177 (578)
                      ++.++..+....          .....+....+....+.+.+.+ ..+...+++.|.+|+++      |++.+++++...
T Consensus       294 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~  356 (399)
T TIGR00893       294 IAGLVLSLLMFA----------TNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGGLINSLG  356 (399)
T ss_pred             HHHHHHHHHHHH----------hccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHHHHHHHH
Confidence            111111100001          0112233333333333344444 67888999999999887      999999999999


Q ss_pred             HHHHHHHHHHHHHhccccC-chhHHHHHHHHHHHHHHHHH
Q 043156          178 CIGGAISVTLIVWIQDNKG-WDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       178 ~lG~~~~p~l~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~  216 (578)
                      ++|..++|.+.|++.+..| |+..|.+.++..+++.+..+
T Consensus       357 ~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       357 NLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888 99999888877666655543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.31  E-value=8.1e-12  Score=133.00  Aligned_cols=178  Identities=10%  Similarity=0.038  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhh
Q 043156           29 LLILAAFGFENLATIALGVNLVTYFNGVLHLD--------LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISG  100 (578)
Q Consensus        29 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s--------~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~  100 (578)
                      +.+++..++..........+.+.|+++ .|.+        ....+.+.+...+...++.++.|+++||+ |||+++.++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~  288 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL  288 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence            344444555544444455777788754 4544        35678999999999999999999999998 9999999998


Q ss_pred             hhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHH-HHHHH
Q 043156          101 SVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLF-LAVCI  179 (578)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~-~~~~l  179 (578)
                      ++..++..+..      .......+...+++..++.+++.+...+....+++|.+|+++      |++++++++ ....+
T Consensus       289 ~~~~v~~~l~~------~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~l  356 (418)
T TIGR00889       289 VAWALRFGFFA------YGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGF  356 (418)
T ss_pred             HHHHHHHHHHH------HcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhh
Confidence            88775533320      000001134566778889999999888888999999999886      999999997 56789


Q ss_pred             HHHHHHHHHHHhccc------cCchhHHHHHHHHHHHHHHHHHhcCC
Q 043156          180 GGAISVTLIVWIQDN------KGWDRGFGLSSVAVFLATIIFAAGLP  220 (578)
Q Consensus       180 G~~~~p~l~~~l~~~------~g~~~~f~i~~~~~~~~~~~~~~~~~  220 (578)
                      |.++||.++|++.++      +||+..|.+.+++.+++.+..++..+
T Consensus       357 g~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       357 GSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999876      46999999888776665555544443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK12382 putative transporter; Provisional

Probab=99.30  E-value=1.3e-11  Score=130.17  Aligned_cols=162  Identities=16%  Similarity=0.149  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCC
Q 043156           37 FENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTA  116 (578)
Q Consensus        37 ~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~  116 (578)
                      .....+..+..+.+.|+++ .|++.  .+.....+.++..++.++.|++.||+ ||||.+.++..+..++.++.      
T Consensus       227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~------  296 (392)
T PRK12382        227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLL------  296 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHH------
Confidence            3445555666777788764 46553  56666777788889999999999998 99999988887766554332      


Q ss_pred             CccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 043156          117 GCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKG  196 (578)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g  196 (578)
                          ....+....++..++.+++.+...|...+.+.|.+|+++      |++.+++++...++|..++|.+.|++.+++|
T Consensus       297 ----~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g  366 (392)
T PRK12382        297 ----WLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSGPLAGMLATSFG  366 (392)
T ss_pred             ----HHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                223455566778888899988888888888899998776      9999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhc
Q 043156          197 WDRGFGLSSVAVFLATIIFAAG  218 (578)
Q Consensus       197 ~~~~f~i~~~~~~~~~~~~~~~  218 (578)
                      |+..|.+.+++.+++.+..+..
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        367 YPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             chHHHHHHHHHHHHHHHHHHhh
Confidence            9999999888777766655543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.30  E-value=1.5e-11  Score=131.61  Aligned_cols=161  Identities=14%  Similarity=0.113  Sum_probs=113.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      ++.....+...++....++.+..+.|.|+++.+|++..+.+++...+.++..++.+++|+++||+ ||||++.++.++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~  315 (434)
T PRK15075        237 WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAI  315 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            33333334444556677888889999999999999999999998889999999999999999998 99998877654432


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHH-HHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAV-CIGGAI  183 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~-~lG~~~  183 (578)
                      +.....    .  .......+.....+..++.+++.+...+....++.|.+|++.      |++++++.+... .+++.+
T Consensus       316 ~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~g~~  383 (434)
T PRK15075        316 LTAYPA----L--SWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIFGGF  383 (434)
T ss_pred             HHHHHH----H--HHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHHhhh
Confidence            111100    0  000112233333344445556666666666788999999987      999999855444 456788


Q ss_pred             HHHHHHHhccccCch
Q 043156          184 SVTLIVWIQDNKGWD  198 (578)
Q Consensus       184 ~p~l~~~l~~~~g~~  198 (578)
                      +|.+.|++.++.|++
T Consensus       384 ~p~~~g~i~~~~g~~  398 (434)
T PRK15075        384 TPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHHhcCCc
Confidence            999999999887754

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.29  E-value=4.6e-11  Score=126.19  Aligned_cols=177  Identities=10%  Similarity=0.018  Sum_probs=133.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      +..+.+.+..++....+++...+++.|+++ +|++..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence            345556666667778888888999999975 799999999999999999999999999999998 999998888766664


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      +..+.       .  ....+.....  ..+.+++.+...|.......|.+++++     +|++.+++.+...+++..++|
T Consensus       283 ~~~~~-------~--~~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g~~~~~~~~~~~~gp  346 (393)
T PRK09705        283 GFCGF-------I--WLPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVAFMQGIGFIIAGLAP  346 (393)
T ss_pred             HHHHH-------H--HccchHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            43332       0  0111211221  234577777777777667778776443     389999999999999999999


Q ss_pred             HHHHHhccccC-chhHHHHHHHHHHHHHHHHHhcCC
Q 043156          186 TLIVWIQDNKG-WDRGFGLSSVAVFLATIIFAAGLP  220 (578)
Q Consensus       186 ~l~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~  220 (578)
                      .+.|++.+..| |+..|++.++..+...+......+
T Consensus       347 ~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        347 WFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999876 888888877776666555554444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.29  E-value=1.9e-11  Score=129.48  Aligned_cols=172  Identities=12%  Similarity=0.004  Sum_probs=128.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPP  107 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~  107 (578)
                      .+.+....++....++....++|.|++ +.|++..+.+.+.+.+.++..++.++.|+++||+ |||+.+..+.+...++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  299 (406)
T PRK11551        222 TLLLWISYFFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASL  299 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            333444445555666777778888876 4799999999999999999999999999999998 99999887655544332


Q ss_pred             cccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 043156          108 PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTL  187 (578)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l  187 (578)
                      ++.          ....+...+.+..++.+++.+...+...+++.|.+|+++      |+++.++++...++|..++|.+
T Consensus       300 ~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~  363 (406)
T PRK11551        300 AAL----------AAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGSMAGPLL  363 (406)
T ss_pred             HHH----------HhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHHHHHhhh
Confidence            221          112344445556666777777777888889999999887      9999999999999999999999


Q ss_pred             HHHhccccC-chhHHHHHHHHHHHHHHHHHh
Q 043156          188 IVWIQDNKG-WDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       188 ~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      +|++.++.+ |...+++.....+++.+..+.
T Consensus       364 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        364 AGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            999987654 566666665555555444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.29  E-value=3.3e-11  Score=126.81  Aligned_cols=169  Identities=17%  Similarity=-0.002  Sum_probs=141.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |..+..++..++.........++.+.|++ ++|.+..+.|.+.+...++..+..++.|++.||+ |+|+++.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            45666667777777888888889999996 5899999999999999999999999999999998 999999999888886


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHH-HHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLF-LAVCIGGAIS  184 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~-~~~~lG~~~~  184 (578)
                      ...+.          ...++.+.+++...+.++..+...++...++.+. |+++      |+++.++++ ....+|..++
T Consensus       283 ~~~~~----------~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~g~~~g  345 (382)
T TIGR00902       283 RWAII----------GAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGGLIAIF  345 (382)
T ss_pred             HHHHH----------HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHHHHHHH
Confidence            65443          4467778888899999999999999999999987 7765      899999876 4678999999


Q ss_pred             HHHHHHhccccCchhHHHHHHHHHHHHHHH
Q 043156          185 VTLIVWIQDNKGWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       185 p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~  214 (578)
                      |.++|++.+++|+ ..|++.+.+.+++++.
T Consensus       346 ~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       346 TAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999999886 6677777766665544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.29  E-value=5.3e-11  Score=125.49  Aligned_cols=175  Identities=11%  Similarity=-0.084  Sum_probs=132.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPP  107 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~  107 (578)
                      .+......++....+++...+++.|+++.+|.|..+++++.+.+.++..++.++.|+++||+ |||+.. .+..+...+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence            33344444555556666677888898888999999999999999999999999999999998 987654 4433333222


Q ss_pred             cccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 043156          108 PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTL  187 (578)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l  187 (578)
                      ...         .....+...+++..++.|++.+...+...+.+.|..|+ +      |++++++++...++|..+||.+
T Consensus       285 ~~l---------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~~~~~~g~~~G~~~  348 (390)
T PRK03545        285 LLL---------LPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A------TDVAMALFSGIFNIGIGAGALL  348 (390)
T ss_pred             HHH---------HHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c------HHHHHHHHHHHHHHHHHHHHHH
Confidence            111         02234555666777778888777667667777787664 4      8999999999999999999999


Q ss_pred             HHHhccccCchhHHHHHHHHHHHHHHHHHhcCC
Q 043156          188 IVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLP  220 (578)
Q Consensus       188 ~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~  220 (578)
                      +|++.+++|++..|++.+.+.+++++......+
T Consensus       349 ~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        349 GNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999998888777776655544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.28  E-value=4.4e-11  Score=125.74  Aligned_cols=160  Identities=14%  Similarity=0.176  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCC
Q 043156           36 GFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPT  115 (578)
Q Consensus        36 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~  115 (578)
                      +.....+.....++|.|+++ .|.+.++++.+.+...++..++.++.|+++||+ |||+++.++..+..++....     
T Consensus       210 ~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~-----  282 (381)
T PRK03633        210 IISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAM-----  282 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHH-----
Confidence            33334444455678888865 699999999999999999999999999999998 99999988877766443221     


Q ss_pred             CCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 043156          116 AGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNK  195 (578)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~  195 (578)
                           .  . .......+.+.+++.+...|...+.+.|..|+++      ++...+.++...++|.++||.++|++.+++
T Consensus       283 -----~--~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~~~G~l~~~~  348 (381)
T PRK03633        283 -----L--S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPSFTAMLMQNY  348 (381)
T ss_pred             -----h--h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 1  1 1223345666777777778888888899988765      677788888889999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHH
Q 043156          196 GWDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       196 g~~~~f~i~~~~~~~~~~~~~  216 (578)
                      +|++.|.+.+.+.+++.+..+
T Consensus       349 g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        349 SDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             CccHHHHHHHHHHHHHHHHHH
Confidence            999999988777766654443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.28  E-value=1.2e-11  Score=131.80  Aligned_cols=165  Identities=12%  Similarity=0.069  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccc
Q 043156           35 FGFENLATIALGVNLVTYFNGVL---HLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNV  111 (578)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~  111 (578)
                      .+.....+.......+.|+.+.+   +.+..+.+.+.+...++..++.+++|+++||+ ||||.+.++.++..++.++. 
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~-  309 (420)
T PRK09528        232 VIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGS-  309 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHH-
Confidence            33333444444455677766543   56777889999999999999999999999998 99999988877766544332 


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHH
Q 043156          112 FDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNL-LFLAVCIGGAISVTLIVW  190 (578)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~-~~~~~~lG~~~~p~l~~~  190 (578)
                               ....+.+.+++.+++.+++.+...+....++.|.+|++.      |++..+. ++...++|.+++|.+.|+
T Consensus       310 ---------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~  374 (420)
T PRK09528        310 ---------GFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGN  374 (420)
T ss_pred             ---------HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHH
Confidence                     234566777788888888888777777788999999876      7877665 677889999999999999


Q ss_pred             hccccCchhHHHHHHHHHHHHHHHHH
Q 043156          191 IQDNKGWDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       191 l~~~~g~~~~f~i~~~~~~~~~~~~~  216 (578)
                      +.+.+||+..|.+.+++.++..++.+
T Consensus       375 l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        375 LYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999988777655554444

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.27  E-value=4.6e-10  Score=114.92  Aligned_cols=386  Identities=12%  Similarity=-0.021  Sum_probs=211.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhH
Q 043156           48 NLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAA  127 (578)
Q Consensus        48 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (578)
                      ....|.++-+| +...+-|...+|.+.+....+.+-|+.|++ |-|.+.+++.....+|..+=.+    .......+.+.
T Consensus        66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~i----ss~p~v~~~f~  139 (480)
T KOG2563|consen   66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLI----SSLPFVPPLFR  139 (480)
T ss_pred             hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhh----ccCccccccch
Confidence            34466777778 788889999999999999999999999998 9999999999999988655311    01111113333


Q ss_pred             --HHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc------cCchh
Q 043156          128 --LLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDN------KGWDR  199 (578)
Q Consensus       128 --~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~------~g~~~  199 (578)
                        ..+.+-.+.+..+-......+.+.+-||++++      |+.+..+-.++.-+|.+++.++...+..+      ..|..
T Consensus       140 ~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~  213 (480)
T KOG2563|consen  140 RPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLF  213 (480)
T ss_pred             hhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHH
Confidence              56677777777776666666777888999988      99999987777777777777666666433      34544


Q ss_pred             --HHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCC
Q 043156          200 --GFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHR  277 (578)
Q Consensus       200 --~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (578)
                        .|+....+..+.++...+.+++.++.+|.. +...                         .               . 
T Consensus       214 ~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~-s~~~-------------------------~---------------~-  251 (480)
T KOG2563|consen  214 FTLFLGVECLAALLLALVLFVFTKKPPTPPSA-SQAA-------------------------L---------------Q-  251 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCch-hHhh-------------------------h---------------h-
Confidence              344333333333333333333333333321 0000                         0               0 


Q ss_pred             CccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCc
Q 043156          278 DIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTS  357 (578)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (578)
                       +.++...-+.                       -..++.-++..+.+-+..-.|+.++..+     ++... .....  
T Consensus       252 -~~~f~~si~~-----------------------~~~n~~F~il~~~ygi~~g~F~~l~~~l-----~~~l~-~sgY~--  299 (480)
T KOG2563|consen  252 -DASFPKSIKS-----------------------CFKNRQFIILAICYGIGLGLFNSLSTLL-----NLALC-PSGYE--  299 (480)
T ss_pred             -cCcHHHHHHH-----------------------HHcCccHHHHHHHHhhhHHHHHHHHHHh-----hhccc-cccCC--
Confidence             0011111000                       0111111111111112222222222211     11111 11111  


Q ss_pred             eeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCC
Q 043156          358 FHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDA  437 (578)
Q Consensus       358 ~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (578)
                       +...+.......+..++.+.+.+.+.||..+-        +  ..+.+-+....++.+.+....               
T Consensus       300 -~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f--------k--~~~~v~~~~~~v~~~~l~~~t---------------  353 (480)
T KOG2563|consen  300 -GVFAGYIGALMIVAGMLGALASGIIADKTKKF--------K--LTTLVLYLFALVGTLMLLTCT---------------  353 (480)
T ss_pred             -ccccchhHHHHHHHHHHHHHHHHhhhhhhhhH--------H--HHHHHHHHHHHHHHHHHHHhh---------------
Confidence             12345555555666777777777777663322        1  122223333333311111111               


Q ss_pred             CCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCC
Q 043156          438 IPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQS  517 (578)
Q Consensus       438 ~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~  517 (578)
                           ...-..+++.....+.|+.+....|...++..|..=+...|+..|+.++..++-+++-..+.+...+.-..   .
T Consensus       354 -----~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~---~  425 (480)
T KOG2563|consen  354 -----LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGP---P  425 (480)
T ss_pred             -----ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCC---C
Confidence                 01112334444556777787888999999999998888889999999887777666666665555421100   0


Q ss_pred             CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Q 043156          518 GGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSV  564 (578)
Q Consensus       518 ~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~  564 (578)
                      +.+.+           .=+..+..+++++++..++...+++++.|..
T Consensus       426 ~~~~~-----------~~i~~~~~~~l~~~lva~~r~~y~R~~~e~~  461 (480)
T KOG2563|consen  426 GNTFP-----------ANIFLTVSALLGAILVAFFRPDYRRLRAEAG  461 (480)
T ss_pred             CCCcc-----------chhHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence            01221           1234455566666777777777766655543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.26  E-value=2.7e-11  Score=128.94  Aligned_cols=162  Identities=14%  Similarity=-0.032  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCcccc
Q 043156           42 TIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKI  121 (578)
Q Consensus        42 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (578)
                      ..+...++|.|+++.+|.+..+.+++.+...++..++.++.|+++||. ++++++.++.++..++.++.          .
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~----------~  307 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLF----------G  307 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHH----------H
Confidence            345667788999888999999999999999999999999999999996 88888887776665443332          2


Q ss_pred             ccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHH
Q 043156          122 EGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGF  201 (578)
Q Consensus       122 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f  201 (578)
                      ..++.....+..++.|++.+...+...+++.|..|++.      |++++++++...++|..+||.+.|++.+.+|++..+
T Consensus       308 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~  381 (417)
T PRK10489        308 LMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASA  381 (417)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHH
Confidence            23455556677777888888777777888999999776      999999999999999999999999999988988888


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q 043156          202 GLSSVAVFLATIIFAAGLP  220 (578)
Q Consensus       202 ~i~~~~~~~~~~~~~~~~~  220 (578)
                      ++.+.+.++..++.....+
T Consensus       382 ~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        382 SASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            8777665554444444333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.26  E-value=2.4e-11  Score=123.46  Aligned_cols=180  Identities=18%  Similarity=0.164  Sum_probs=137.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chhhhhhhhhhh-h
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFI-GRFKAVLISGSV-E  103 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grr~~~~~~~~~-~  103 (578)
                      |.+|.+++.+++..+.-|++..+.|.|+.++.|+|..++++..+.|-.++..+.++.||+|||+. |||....+.+.+ .
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            77999999999999999999999999999999999999999999999999999999999999987 777654433222 2


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH-HHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI-GGA  182 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l-G~~  182 (578)
                      .+....        .+.....+..+..+..+.+|+-.-+..-.+-....|..|++-      -+++.|+......+ |+.
T Consensus       332 ~~~~~~--------~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~Glf~Yl~Ga~  397 (448)
T COG2271         332 TASLVL--------YWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVGLFAYLIGAA  397 (448)
T ss_pred             HHHHHH--------HHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhhhHHHHhhHH
Confidence            222111        122222345555555555555443333344566789999876      69999998888888 999


Q ss_pred             HHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcC
Q 043156          183 ISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGL  219 (578)
Q Consensus       183 ~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~  219 (578)
                      .+....|++.+.+||...|.+..+..+++.+.+....
T Consensus       398 ~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         398 LAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             hcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999989999999988777766665554433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.26  E-value=4.2e-11  Score=128.20  Aligned_cols=175  Identities=14%  Similarity=0.070  Sum_probs=120.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch--hhhhhh---hh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGR--FKAVLI---SG  100 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr--r~~~~~---~~  100 (578)
                      +.++.+.+..+.....++.+..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.+|  ++....   +.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~  322 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI  322 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence            3456666666666677777788999999889999999999999999999999999999999997222  222111   11


Q ss_pred             hhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHH
Q 043156          101 SVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIG  180 (578)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG  180 (578)
                      +.........          . ..+.....+..++.|++...........++|.+|+++      |+++.++.+...++|
T Consensus       323 ~~~~~~~~~~----------~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g  385 (434)
T PRK11663        323 LLSVGSLWLM----------P-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVGLFAYLG  385 (434)
T ss_pred             HHHHHHHHHc----------c-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHHHHHHHH
Confidence            1111111110          1 1122222232333333222111122356688888776      999999999999999


Q ss_pred             HHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHh
Q 043156          181 GAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       181 ~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      ..++|.+.|++.++.||+..|++.+++.+++.+..+.
T Consensus       386 ~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        386 AALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888887666554443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.25  E-value=5e-12  Score=111.78  Aligned_cols=132  Identities=22%  Similarity=0.256  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccc
Q 043156           69 TNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALP  148 (578)
Q Consensus        69 ~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~  148 (578)
                      +.+.++..++.++.|+++||+ |||+.+.++..+..++.++.          ....+...+.+.+++.+++.+...+...
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~   73 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMF----------ALSSNITVLIIARFLQGFGAAFALVAGA   73 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHH----------HHhccHHHHHHHHHHHHHHHHHHHHhHH
Confidence            445678889999999999998 99999998887777554332          2235667788889999999999899999


Q ss_pred             cccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHh
Q 043156          149 PYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       149 ~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      +++.|.+|+++      |++.+++.+...++|..++|.+.+++.+..+|++.|++.+....++.+..++
T Consensus        74 ~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        74 ALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             HHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            99999999887      9999999999999999999999999998889999999887776665555444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.25  E-value=3.6e-11  Score=129.47  Aligned_cols=178  Identities=16%  Similarity=0.103  Sum_probs=122.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch--hhhhh-hhhhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGR--FKAVL-ISGSV  102 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr--r~~~~-~~~~~  102 (578)
                      +.+|...+..++....+++...++|.|++++.|++..+++.....+.++..++.+++|+++||+ ++  |+... ....+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l  331 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL  331 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHH
Confidence            4567777777777788888889999999999999999999999999999999999999999996 54  33222 22222


Q ss_pred             hccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                      ..++.++.        ......+....++..++.+.+.....+....+..|.+|++.      |++++++.+...++|+.
T Consensus       332 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~  397 (452)
T PRK11273        332 VTIATIVY--------WLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGS  397 (452)
T ss_pred             HHHHHHHH--------HHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHHHHHHHHHHH
Confidence            22221111        00111233333333344443322222223345679999886      99999999988888865


Q ss_pred             H-HHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhc
Q 043156          183 I-SVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAG  218 (578)
Q Consensus       183 ~-~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~  218 (578)
                      + +|.+.|++.++.||+..|++.++..+++++.....
T Consensus       398 ~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        398 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            5 79999999999999999998887766665554433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.24  E-value=1.3e-11  Score=129.62  Aligned_cols=191  Identities=13%  Similarity=0.063  Sum_probs=139.6

Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-hh
Q 043156           17 AVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNG-VLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGR-FK   94 (578)
Q Consensus        17 ~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-r~   94 (578)
                      .++..+.+||.+++..+..++....+....+..-.|+++ +.+.+.+..|++++...++..+..+..|+.+.|. |+ |+
T Consensus        25 ~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~  103 (488)
T KOG2325|consen   25 PLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKK  103 (488)
T ss_pred             cccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCccc
Confidence            334457789999999999999888888777777788865 4778888999999999999999999999999997 75 66


Q ss_pred             hhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHH
Q 043156           95 AVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLF  174 (578)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~  174 (578)
                      =++.|+++..+|-++-     ...........+.++++|++.|+|.|. ....-+++++....++      |.++++...
T Consensus       104 Pli~s~ii~~~g~llY-----~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~d------R~rA~a~~~  171 (488)
T KOG2325|consen  104 PLIVSFLIAIIGNLLY-----LALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVED------RPRAFAATS  171 (488)
T ss_pred             CHHHHHHHHHHHHHHH-----HHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccc------hHHHHHHhh
Confidence            6677777777664331     001111122677889999999999775 3455788888887777      999999877


Q ss_pred             HHHHHHHHHHHHHHHHhc----cc---------cCchhHHHHHHHHHHHHHHHHHhcCC
Q 043156          175 LAVCIGGAISVTLIVWIQ----DN---------KGWDRGFGLSSVAVFLATIIFAAGLP  220 (578)
Q Consensus       175 ~~~~lG~~~~p~l~~~l~----~~---------~g~~~~f~i~~~~~~~~~~~~~~~~~  220 (578)
                      .+..+|.++||.+...+.    +.         .-|..+=|+.+++.++..+.+.+..+
T Consensus       172 ~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~  230 (488)
T KOG2325|consen  172 GGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK  230 (488)
T ss_pred             hHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence            777777777777765442    11         12456667777776666665555444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.24  E-value=5.9e-11  Score=120.76  Aligned_cols=186  Identities=11%  Similarity=-0.028  Sum_probs=149.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      .|..|.+++..+...-+|.++..+++.|+++++|.+..++|.....+.+.+.+..++||+||||+ |.+|+.++....++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999998 99898888777777


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      ++..+..+   ..-......+....+..-+..++..|.-..+...++...+|.+       -+...|+.....++|+..-
T Consensus       296 ~~~~~l~~---~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vga~G~lGGf~l  365 (417)
T COG2223         296 LAAALLSL---FLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVGAIGGLGGFFL  365 (417)
T ss_pred             HHHHHHHc---cccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHHHhccccccch
Confidence            55443311   0000011244445555555566777777778899999999876       4899999999999999999


Q ss_pred             HHHHHHhccccC-chhHHHHHHHHHHHHHHHHHhcCCC
Q 043156          185 VTLIVWIQDNKG-WDRGFGLSSVAVFLATIIFAAGLPL  221 (578)
Q Consensus       185 p~l~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~~  221 (578)
                      |...+...+..| +...|++.....+++.+..+....|
T Consensus       366 p~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         366 PLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             hHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999988877 9999999888887777766655444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.23  E-value=5.3e-11  Score=125.50  Aligned_cols=158  Identities=20%  Similarity=0.172  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcc
Q 043156           30 LILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPC  109 (578)
Q Consensus        30 ~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~  109 (578)
                      .+.....+.....+....+++.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++.++.....+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~  320 (405)
T TIGR00891       242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIP  320 (405)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHH
Confidence            334444444555556667889999999999999999999999999999999999999998 9999998887655321111


Q ss_pred             cccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043156          110 NVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIV  189 (578)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~  189 (578)
                      .         .....+...+.+..++.++..+...+..++++.|.+|+++      |++.+|+.+...++|..++|.+.|
T Consensus       321 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~g~~~~g  385 (405)
T TIGR00891       321 V---------FAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLGGALAPIIGA  385 (405)
T ss_pred             H---------HHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHHHHHHHHHHH
Confidence            1         0112344445555566666666667778889999999887      999999999999999999999999


Q ss_pred             HhccccC-chhHHHH
Q 043156          190 WIQDNKG-WDRGFGL  203 (578)
Q Consensus       190 ~l~~~~g-~~~~f~i  203 (578)
                      ++.++.| |+..|..
T Consensus       386 ~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       386 LLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHhccccchhHHh
Confidence            9999888 8776655

>TIGR00897 2A0118 polyol permease family

Probab=99.21  E-value=1.8e-10  Score=122.07  Aligned_cols=177  Identities=12%  Similarity=0.051  Sum_probs=129.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhh-hhhhhhc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVL-ISGSVEF  104 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-~~~~~~~  104 (578)
                      |..+...+..++....+++...+.|.|++ ++|++..+.+.+.+.+.++..++.++.|+++||+ |||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            34566667777788888888899998885 5899999999999999999999999999999998 9988764 2222222


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      +..++..     ........+....++..++.|++.+...+. ...+.|..| ++      |++++++++...++|..++
T Consensus       300 ~~~~~l~-----~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~~~g~~~~~~~lg~~~g  366 (402)
T TIGR00897       300 IFTLALY-----YIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGAAMSVLNLSAGLSAFLA  366 (402)
T ss_pred             HHHHHHH-----HHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHHHHHHHHHHHHHHHHHH
Confidence            1111110     000011234455556677777777665443 455667654 44      9999999999999999999


Q ss_pred             HHHHHHhccccCchhHHHHHHHHHHHHHHHHHh
Q 043156          185 VTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       185 p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      |.+++++.+.+||+..|++.+++.+++.+...+
T Consensus       367 p~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       367 PAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988877666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.21  E-value=1e-10  Score=125.11  Aligned_cols=170  Identities=12%  Similarity=0.021  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCC
Q 043156           35 FGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDP  114 (578)
Q Consensus        35 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~  114 (578)
                      .+.....+|++..++|.|+.+++|.+..+.+...+...++..++.++.|+++||+ |||+++.++.++..+......   
T Consensus       252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~---  327 (432)
T PRK10406        252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPIL---  327 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHH---
Confidence            3344677888899999999999999999999988888888889999999999998 999988776554321111000   


Q ss_pred             CCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHhcc
Q 043156          115 TAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVC-IGGAISVTLIVWIQD  193 (578)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~-lG~~~~p~l~~~l~~  193 (578)
                         .......+....+....+..++.+...+....+++|.+|++.      |++++|+.+...+ +++..+|.+.+++..
T Consensus       328 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g~~~p~~~~~l~~  398 (432)
T PRK10406        328 ---SALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFGGSAEYVALSLKS  398 (432)
T ss_pred             ---HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHHhHHHHHHHHHHH
Confidence               000111122221111122222333334456678899999987      9999999776555 445568888887654


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHh
Q 043156          194 NKGWDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       194 ~~g~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      ...|...++..++..+++.+..++
T Consensus       399 ~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        399 IGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHH
Confidence            323666666655555555555444

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.20  E-value=1.4e-10  Score=126.33  Aligned_cols=150  Identities=21%  Similarity=0.160  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCcccccc
Q 043156           44 ALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEG  123 (578)
Q Consensus        44 ~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (578)
                      ....++|.|+++++|++..+++++.+...++..++.+++|+++||+ |||+++.++.++..+..++.       . ....
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~-------~-~~~~  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPV-------F-AIGG  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHH-------h-hccc
Confidence            3457889999889999999999999999999999999999999998 99999888766554332221       0 0112


Q ss_pred             chhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHH
Q 043156          124 SDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGL  203 (578)
Q Consensus       124 ~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i  203 (578)
                      .+.....+..++.+.......+..++++.|.+|+++      |++.+++++...++|..++|.++|++.+.+||+..+.+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~  437 (496)
T PRK03893        364 ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALAS  437 (496)
T ss_pred             cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHH
Confidence            233333333343333333345667788899999876      99999999999999999999999999999999988766


Q ss_pred             HHHHH
Q 043156          204 SSVAV  208 (578)
Q Consensus       204 ~~~~~  208 (578)
                      .+...
T Consensus       438 ~~~~~  442 (496)
T PRK03893        438 LSFSL  442 (496)
T ss_pred             HHHHH
Confidence            55443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.20  E-value=7.8e-10  Score=112.69  Aligned_cols=364  Identities=14%  Similarity=0.030  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHhcCC---CH----HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc-CCcccccCCCC
Q 043156           45 LGVNLVTYFNGVLHL---DL----AEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL-PPPCNVFDPTA  116 (578)
Q Consensus        45 ~~~~l~~yl~~~lg~---s~----~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~-~~~~~~~~~~~  116 (578)
                      ...++|+|+++..+-   +.    +..+...++..+...+..|+-|.++|+. |+||-..-.+....+ .+.++      
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L------  106 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLL------  106 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHH------
Confidence            345688888887655   32    3456777778888889999999999998 888866544443332 22222      


Q ss_pred             CccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHH--HHh-c-
Q 043156          117 GCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLI--VWI-Q-  192 (578)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~--~~l-~-  192 (578)
                       ........+....+...+..++.........+++.|..++++      -++..++-+....+|+.+.-+..  +.+ . 
T Consensus       107 -~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i~li~~~~~~~~~~  179 (438)
T COG2270         107 -WFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVILLIFVVLGFALGQ  179 (438)
T ss_pred             -HHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchHHHHHHHHHHhccc
Confidence             111111355556667777888888888889999999999887      34444444445555555543332  111 1 


Q ss_pred             --------------cccCchhHHHHHHHHHHHHHHHHHhcCCCceec-CCCCcchHHHHHHHHHHHHHhcccCCCCCchh
Q 043156          193 --------------DNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQ-VVQGSSVLIEIIQVYVAAIRNRKLELPEDPME  257 (578)
Q Consensus       193 --------------~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (578)
                                    +...-|..+.++++-.++..+=.++..++.++. .|.. +.+..       .              
T Consensus       180 ~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~-~~l~~-------g--------------  237 (438)
T COG2270         180 QTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPP-TALRN-------G--------------  237 (438)
T ss_pred             ccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccch-HHHHH-------H--------------
Confidence                          112235555555444333222222211111110 0000 00000       0              


Q ss_pred             hhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhh--hHHHHHhHHHHHHHHHHHHHh
Q 043156          258 LYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVE--NAKIILGMIPIFCCTIVMTLC  335 (578)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~~~~~~~~~~~~~~~~  335 (578)
                                              +-+.                       ..+..+  .+|.+++    +...-.++..
T Consensus       238 ------------------------~k~L-----------------------~~t~k~i~~~~~i~~----FLiA~~~~~D  266 (438)
T COG2270         238 ------------------------FKEL-----------------------KSTFKEIRGRKNLVL----FLIARFFYID  266 (438)
T ss_pred             ------------------------HHHH-----------------------HHHHHHHhcccchHH----HHHHHHHHHh
Confidence                                    0000                       000000  1111111    1111111111


Q ss_pred             h-hccc---hhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHH
Q 043156          336 L-AQLQ---TFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLS  411 (578)
Q Consensus       336 ~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~  411 (578)
                      - +...   +.+-..    +.++.   ...-..+.....+..++++.+.+++-+|++.|           +.+.+|+++.
T Consensus       267 Gv~til~~~~~fg~~----~~gls---~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k-----------~vl~~~lvi~  328 (438)
T COG2270         267 GVNTILAMGGVFGAA----DLGLS---STELLLIGIALSVVAALGAIIAGFLDERFGSK-----------PVLMIGLVIL  328 (438)
T ss_pred             hHHHHHHHHHHHHHH----HcCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------eeehHHHHHH
Confidence            0 0000   111110    11110   00111222233345556666667666555555           3455666665


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHH
Q 043156          412 CISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWC  491 (578)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~  491 (578)
                      .+..+...+.+                     .+..+   ...-++.++..+..+..+=++..+.+|++..|+..|++++
T Consensus       329 ~~~~~~~~~~~---------------------~~~~f---~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyal  384 (438)
T COG2270         329 SIAALYLIFLE---------------------GELDF---WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYAL  384 (438)
T ss_pred             HHHHHHHHHcc---------------------ccHHH---HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhh
Confidence            54443333322                     11122   2223667788888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 043156          492 SMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSS  554 (578)
Q Consensus       492 ~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  554 (578)
                      ....++.+||.+++.+.+.|.+                 -+..+....++.++++++.+....
T Consensus       385 tgra~S~~gp~lv~v~t~iTg~-----------------~r~g~~~i~vll~iGl~~L~~v~~  430 (438)
T COG2270         385 TGRAASFLGPFLVAVITQITGS-----------------SRAGVLSIIVLLLIGLLLLLRVKV  430 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcc-----------------hhhHHHHHHHHHHhhHhhEEeecC
Confidence            9999999999999999876621                 234566777777777777766543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.20  E-value=2.4e-10  Score=117.43  Aligned_cols=178  Identities=17%  Similarity=0.090  Sum_probs=140.3

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      .+.++..+...++...+.|...+|+.+++++..|+|.+..+++...|.++..++.+++|+++||  +.|+++.....+..
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a  287 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA  287 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence            3456677778888889999999999999999999999999999999999999999999999999  78888887766666


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      +..+.+         .....+.....+..++.++..+........-+++..| ++      ++.+.+++....|+|...|
T Consensus       288 ~~~l~l---------~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~------~~~a~sl~~aa~nlgia~G  351 (394)
T COG2814         288 LALLAL---------TFTGASPALALALLFLWGFAFSPALQGLQTRLARLAP-DA------ADLAGSLNVAAFNLGIALG  351 (394)
T ss_pred             HHHHHH---------HHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-Cc------hHHHHHHHHHHHHHHHHHH
Confidence            443332         1223444555555555666655544444555555333 33      7999999999999999999


Q ss_pred             HHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCC
Q 043156          185 VTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLP  220 (578)
Q Consensus       185 p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~  220 (578)
                      ..++|.+.+++|+....++.++..++++++.+...+
T Consensus       352 A~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         352 AALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998888777665444

>TIGR01272 gluP glucose/galactose transporter

Probab=99.20  E-value=1.4e-09  Score=111.01  Aligned_cols=86  Identities=17%  Similarity=0.089  Sum_probs=72.2

Q ss_pred             cchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc--------
Q 043156          123 GSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDN--------  194 (578)
Q Consensus       123 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~--------  194 (578)
                      ..++..++++.++.|.|.+...++.++++++..|+++      +++.+++......+|..++|.+++.+...        
T Consensus         7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~   80 (310)
T TIGR01272         7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ   80 (310)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence            4678889999999999999999999999999999876      89999999999999999999999977631        


Q ss_pred             --------cCchhHHHHHHHHHHHHHHH
Q 043156          195 --------KGWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       195 --------~g~~~~f~i~~~~~~~~~~~  214 (578)
                              .+|++++++.+.+.++..++
T Consensus        81 ~~~~~~~~~~~~~~yl~ia~~~~~~~i~  108 (310)
T TIGR01272        81 VATANAEAAKVHTPYLLLAGALAVLAII  108 (310)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    36889988666554444333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.18  E-value=2.8e-11  Score=130.40  Aligned_cols=172  Identities=19%  Similarity=0.055  Sum_probs=133.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhc-cchhhhhhhhhhhh-
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAF-IGRFKAVLISGSVE-  103 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~-~Grr~~~~~~~~~~-  103 (578)
                      |..+..+...++..+.++....+++.|++ ++|++..+++.+.+...++..++.+++|+++||. .++|+...++.... 
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            34566666677777788888888999986 5799999999999999999999999999999983 14444443332222 


Q ss_pred             -ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          104 -FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                       .++.++.          ....+.+.+++.+++.|++.+...+...+++.|.+|+++      |++.+++++...++|..
T Consensus       320 ~~l~~ll~----------~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~lg~~  383 (455)
T TIGR00892       320 NGLTHLLC----------ALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVTIVECCAVL  383 (455)
T ss_pred             HHHHHHHH----------HHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHHHHHHHHHH
Confidence             2211111          223566677788999999999999999999999999876      99999999999999999


Q ss_pred             HHHHHHHHhcccc-CchhHHHHHHHHHHHHHHH
Q 043156          183 ISVTLIVWIQDNK-GWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       183 ~~p~l~~~l~~~~-g~~~~f~i~~~~~~~~~~~  214 (578)
                      +||.++|++.+.. +|+..|++.+++.+++.+.
T Consensus       384 igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       384 IGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             ccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            9999999998877 5999999988776665543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.15  E-value=2.5e-10  Score=122.69  Aligned_cols=162  Identities=16%  Similarity=0.045  Sum_probs=114.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCcccccc----c
Q 043156           49 LVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEG----S  124 (578)
Q Consensus        49 l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  124 (578)
                      ...++.+++|++..+.++......++..++.+++|+++||+ |||+.+.+++++..++.++..+   ........    .
T Consensus       306 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  381 (481)
T TIGR00879       306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGI---LGASFVTGSSKSS  381 (481)
T ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH---HhhcccCCcccch
Confidence            33455567899998889999999999999999999999998 9999998887766644333200   00000000    0


Q ss_pred             hhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHH
Q 043156          125 DAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLS  204 (578)
Q Consensus       125 ~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~  204 (578)
                      +...+....+..+.......+....++.|.+|+++      |++++++.+...++|.+++|.+.+++.++.+|++.|++.
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~  455 (481)
T TIGR00879       382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFF  455 (481)
T ss_pred             hHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhH
Confidence            22222222222222222334666777899999886      999999999999999999999999998888999999988


Q ss_pred             HHHHHHHHHHHHhcCC
Q 043156          205 SVAVFLATIIFAAGLP  220 (578)
Q Consensus       205 ~~~~~~~~~~~~~~~~  220 (578)
                      +++.+++.+..++..+
T Consensus       456 ~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       456 GGLNVLGLIFVYFFLP  471 (481)
T ss_pred             HHHHHHHHHHHheecc
Confidence            8777666665554433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.15  E-value=1.1e-09  Score=116.48  Aligned_cols=359  Identities=16%  Similarity=0.127  Sum_probs=207.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHH----HHHHHHHHhHHHHHhhhccchhhhhhhhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLA-EAANQVTNY----MGTSYILSIVVALLADAFIGRFKAVLISG  100 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~-~~~~~~~~~----~~~~~~~~~~~G~laD~~~Grr~~~~~~~  100 (578)
                      +.+....+...+....-+....+...+.....+.+.. ..+......    .+...+..+.-|.++||+ |||..+.+.+
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~   99 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPL   99 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHH
Confidence            3444444444444333333335555565555544332 233444444    577888999999999998 9999999999


Q ss_pred             hhhccCCcccccCCCCCccccccchhHHHHHHHHHHHH--hccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHH
Q 043156          101 SVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIAT--GTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVC  178 (578)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~  178 (578)
                      +...++.+++          ... ..+ +++   +.++  +.+.......++++|....++      |...+++.+....
T Consensus       100 ~~~~l~~~~~----------~~~-~~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~  158 (463)
T KOG2816|consen  100 FGTILPALCL----------LFQ-GYW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFG  158 (463)
T ss_pred             HHHHHhHHHH----------HHH-HHH-Hhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHH
Confidence            8888665554          111 122 222   3232  334566677899999999886      9999999999999


Q ss_pred             HHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhh
Q 043156          179 IGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMEL  258 (578)
Q Consensus       179 lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (578)
                      .+..++|.+++.+.+..|.-.+|++..+..++..+...+..++-..++.+++.+                 .....+.  
T Consensus       159 ~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~-----------------~~~~~~~--  219 (463)
T KOG2816|consen  159 AGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDAT-----------------LRELTPG--  219 (463)
T ss_pred             HHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccc-----------------ccccCCC--
Confidence            999999999999999999999999999988887776666555433322211000                 0000000  


Q ss_pred             hhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhc
Q 043156          259 YEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQ  338 (578)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~  338 (578)
                                    ...+....                      ++++....  ...+|..+..+.  ........-...
T Consensus       220 --------------~~~~~~~~----------------------~~~~~~~~--~~~~r~~l~l~l--~~~~~~~~~~~~  259 (463)
T KOG2816|consen  220 --------------SLDSSHVA----------------------DAFQSLTK--VGPDRLLLLLLL--VAFLSSLPEAGG  259 (463)
T ss_pred             --------------cccchhhh----------------------hhhhhhcc--cCCCccchHHHH--HHHHHHHHHhcC
Confidence                          00000000                      11110000  111111111111  111111111111


Q ss_pred             cc---hhhhhhhccCCCCCCCceeeCCCcccCch----hHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHH
Q 043156          339 LQ---TFSIQQGLTMDTSVTTSFHIPPASLPILP----ILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLS  411 (578)
Q Consensus       339 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~  411 (578)
                      ..   .++.......+..       .-+.+.+..    .+..++..|+....   ++.|           +.+..|++..
T Consensus       260 ~~~~~~~yl~~~f~w~~~-------~~s~~~~~~~~~~~i~~l~~~~~l~~~---l~~~-----------~~i~lGl~~~  318 (463)
T KOG2816|consen  260 ASDVLLLYLKAKFGWNKK-------EFSDLLSLVSILGIISQLLLLPLLSSI---LGEK-----------RLISLGLLSE  318 (463)
T ss_pred             ceeEEEEEEeeecCcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhh-----------hHhhHHHHHH
Confidence            11   1222221111111       111122222    23333333333222   2333           3677899999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHH
Q 043156          412 CISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWC  491 (578)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~  491 (578)
                      .+++.+.++.+                        .. |+...............|...+++..++.++.+|...++...
T Consensus       319 ~~~~~~~af~~------------------------~~-w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~  373 (463)
T KOG2816|consen  319 FLQLLLFAFAT------------------------ET-WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISG  373 (463)
T ss_pred             HHHHHHHHHhc------------------------cc-hhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHH
Confidence            99999988865                        22 233333444555567789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccc
Q 043156          492 SMALGYFFSTILVNIVNSAT  511 (578)
Q Consensus       492 ~~~ig~~lg~~~~~~~~~~~  511 (578)
                      ...+.+.+++.+.+.+...|
T Consensus       374 i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  374 IEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             HHHHhhhhhHHHHHHHHHHH
Confidence            99999999999888776544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.15  E-value=7.5e-10  Score=120.00  Aligned_cols=173  Identities=13%  Similarity=0.070  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhh-------hhhhhh
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFK-------AVLISG  100 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~-------~~~~~~  100 (578)
                      .|.+.+..++.....+....+++.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+       ...+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~  332 (476)
T PLN00028        254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ  332 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence            45555555555555566677889999999999999999999999999999999999999997 8762       221222


Q ss_pred             hhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHH
Q 043156          101 SVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIG  180 (578)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG  180 (578)
                      ++..+..++.          ....+.....+..++.+++.+...+...+++.+..| ++      |+...++.+.+.++|
T Consensus       333 ~l~~i~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~g~lg  395 (476)
T PLN00028        333 TLGGVFCIWL----------GRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVISGLTGAGGNVG  395 (476)
T ss_pred             HHHHHHHHHh----------cccchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhhhhhhccccHH
Confidence            2211111111          222333444444455555555445555666667655 34      899999988877888


Q ss_pred             HHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcC
Q 043156          181 GAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGL  219 (578)
Q Consensus       181 ~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~  219 (578)
                      +.++|.+.+ .....+|+..|++.+++.+++.++.++.+
T Consensus       396 ~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        396 AVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            887776654 22345699999998888777776665554

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.12  E-value=6.6e-10  Score=120.80  Aligned_cols=179  Identities=14%  Similarity=0.102  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCC
Q 043156           29 LLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVT-NYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPP  107 (578)
Q Consensus        29 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~-~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~  107 (578)
                      +.+....++.....+....+.+.|+.+++|+|.++.+++.. ...++..++.+++|+++||+ ||||.+.++.++.++..
T Consensus       225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            33333344555555556677888888889999999999985 55679999999999999998 99998876655444222


Q ss_pred             cccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 043156          108 PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTL  187 (578)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l  187 (578)
                      ++..      .......+...+.+..++..+..|...++..++..+..+++.      +++.+++.+...++|..+++.+
T Consensus       304 l~~~------~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~lg~~~~~~~  371 (491)
T PRK11010        304 AGYW------LLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALSAVGRVYVGPV  371 (491)
T ss_pred             HHHH------HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHHHHHHHHHH
Confidence            1110      000111233333444445444445555666788888888876      7889999999999999989899


Q ss_pred             HHHhccccCchhHHHHHHHHHHHHHHHHHhcCC
Q 043156          188 IVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLP  220 (578)
Q Consensus       188 ~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~  220 (578)
                      +|++.+.+||+..|.+.+++.+.+++.....++
T Consensus       372 ~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        372 AGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999888888777766665543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.11  E-value=4.1e-10  Score=118.77  Aligned_cols=174  Identities=12%  Similarity=-0.020  Sum_probs=122.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMG-TSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      .+..+...++...+.....++.+.|+.+ .|++.++.|++...... ...++.+++|+++||+ |+||++.++.++....
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            4445555556666666667788888865 79999999999888764 5667789999999998 9999998876655221


Q ss_pred             CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCC-CChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDE-KDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~-~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      .+...    .........+....+....+.+++.+...+...+.+.+..++ +.      +++.+++++...++|..++|
T Consensus       288 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~lg~~~g~  357 (390)
T TIGR02718       288 ALLWF----AQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQSTRDLGELIAS  357 (390)
T ss_pred             HHHHH----HHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHHHHHHHHHHH
Confidence            11110    000000012233333444455566676666666776676665 44      89999999999999999999


Q ss_pred             HHHHHhccccCchhHHHHHHHHHHHHHH
Q 043156          186 TLIVWIQDNKGWDRGFGLSSVAVFLATI  213 (578)
Q Consensus       186 ~l~~~l~~~~g~~~~f~i~~~~~~~~~~  213 (578)
                      .++|++.+..||+..|.+.+++.+++.+
T Consensus       358 ~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       358 SIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            9999999989999999887776655543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.11  E-value=1.1e-09  Score=115.35  Aligned_cols=169  Identities=14%  Similarity=-0.000  Sum_probs=130.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |..+..++..++....+.....+.+.|+. +.|.+..+.+.+.+...++..+..++.|++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            44555555566666666667788888985 5899999999999988889999999999999998 999999988887775


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHH-HHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLF-LAVCIGGAIS  184 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~-~~~~lG~~~~  184 (578)
                      ..++.          ...++.+.+++..++.|++.+...+....++.+. ++++      +++..+.+. ....+|..+|
T Consensus       283 ~~~~~----------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~g~~ig  345 (382)
T PRK11128        283 RWGLM----------GSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSALAMGGSIAIM  345 (382)
T ss_pred             HHHHH----------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHHHHHHHHHHH
Confidence            43332          3346777778888999999998888888888776 4443      678888875 5567888999


Q ss_pred             HHHHHHhccccCchhHHHHHHHHHHHHHHH
Q 043156          185 VTLIVWIQDNKGWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       185 p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~  214 (578)
                      |.++|++.+.+|+ ..|+..+++.+.+++.
T Consensus       346 ~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        346 TVLSGFLYQHLGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999998887 4666666655555443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.10  E-value=4.5e-10  Score=119.39  Aligned_cols=165  Identities=10%  Similarity=-0.011  Sum_probs=116.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhh-hhhhhhhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNG-VLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKA-VLISGSVE  103 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~-~~~~~~~~  103 (578)
                      +..+......++....++++..++|.|+++ ..|.+..+++.......++..++.+++|+++||+ |||+. .....+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~  320 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA  320 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence            346667777788888899999999999976 3577888999999999999999999999999998 87774 33333333


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      .++..+.       .  . ..+.........+.++|.....+.......|.+|+++      |++++++.+...++|+++
T Consensus       321 ~~~~~~~-------~--~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~~~~~~g~~~  384 (412)
T TIGR02332       321 AAGWLLA-------S--A-TDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVINATGNIGSAL  384 (412)
T ss_pred             HHHHHHH-------H--h-cCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHHHhhhhhhhh
Confidence            3222111       0  1 1111111222223333333333344455577788776      999999999999999999


Q ss_pred             HHHHHHHhccccC-chhHHHHHHHH
Q 043156          184 SVTLIVWIQDNKG-WDRGFGLSSVA  207 (578)
Q Consensus       184 ~p~l~~~l~~~~g-~~~~f~i~~~~  207 (578)
                      +|.+.|.+.+..| |+..|++.++.
T Consensus       385 ~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       385 SPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhhhcccccccCCCCchhHHHHHHH
Confidence            9999999998775 99998876654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.10  E-value=9.5e-10  Score=116.62  Aligned_cols=174  Identities=11%  Similarity=-0.084  Sum_probs=124.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      .++...+...+....++......|.|+.+++|++..+.++......++..++.++.|+++||+ |||+.+.++.++..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            345555555555555555666778888889999999999888888888899999999999998 9999998887766644


Q ss_pred             CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVT  186 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~  186 (578)
                      .++..+     .......+...++++.++.++|.+...+......... ++++      |++..+.++....+|..+|+.
T Consensus       295 ~~~~~~-----~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~~~~~~~~~~~~g~~  362 (406)
T PRK15402        295 LLLAAL-----ATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAAMGMLSMLIFTVGIE  362 (406)
T ss_pred             HHHHHH-----HHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHHHHHHHHHHHHHHHH
Confidence            433200     0001123455566778888888887777655544433 3344      899999999999999999999


Q ss_pred             HHHHhccccCchhHHHHHHHHHHHHHH
Q 043156          187 LIVWIQDNKGWDRGFGLSSVAVFLATI  213 (578)
Q Consensus       187 l~~~l~~~~g~~~~f~i~~~~~~~~~~  213 (578)
                      +++++.+..++....+..++..++.++
T Consensus       363 ~~~~l~~~~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK15402        363 LSKHAYLGGGNGLFNLFNLANGLLWLL  389 (406)
T ss_pred             HHHhcccCCchHHHHHHHHHHHHHHHH
Confidence            999998877766555554444444333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.10  E-value=1.1e-09  Score=117.49  Aligned_cols=184  Identities=18%  Similarity=0.126  Sum_probs=149.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh--hhhhhhhhh
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRF--KAVLISGSV  102 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr--~~~~~~~~~  102 (578)
                      .|.+...+++.++-+-+...+......|.++++|++..+...+.....+.+.++.++.|++.||+ |.|  +++++++++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL  358 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence            46677778888888888899999999999999999999999999999999999999999999998 999  898888877


Q ss_pred             hccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                      +.+-.+...+ +..... ....+.+.+++.-++.|+..|...+..-++.+|+.|+++      .+..+|++.......+.
T Consensus       359 ~~~i~~~g~~-G~~~~~-~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~  430 (477)
T PF11700_consen  359 WIIIPLYGLF-GFWPSF-FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSW  430 (477)
T ss_pred             HHHHHHHHHH-Hhhhcc-cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHH
Confidence            7421111000 000000 112455667777788999999999999999999999987      79999999999999999


Q ss_pred             HHHHHHHHhccccC-chhHHHHHHHHHHHHHHHHHh
Q 043156          183 ISVTLIVWIQDNKG-WDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       183 ~~p~l~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      +||.+.|.+.+..| -|+.+....+..++++++++.
T Consensus       431 lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  431 LGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence            99999999988776 888888777777777766544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.09  E-value=3.1e-10  Score=121.73  Aligned_cols=179  Identities=15%  Similarity=0.079  Sum_probs=120.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc-
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF-  104 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~-  104 (578)
                      +..+...+..++.....+++..++|.|+++..|++..+++++...+.+++.++.+++|+++||+ |+++....+..... 
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~  329 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL  329 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence            3456666666676777788889999999998999999999999999999999999999999997 76543333322211 


Q ss_pred             --cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH-
Q 043156          105 --LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG-  181 (578)
Q Consensus       105 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~-  181 (578)
                        ++.++.        ......+........++.|++.............|.+|+++      |+++.|+.+...++|+ 
T Consensus       330 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~gg~  395 (438)
T TIGR00712       330 VTIAVIVY--------WMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGS  395 (438)
T ss_pred             HHHHHHHH--------HhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhhchHHHhhhh
Confidence              111110        00111222222333333343322111122345678999876      9999999988888874 


Q ss_pred             HHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcC
Q 043156          182 AISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGL  219 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~  219 (578)
                      +++|.+.|++.++.||...|++.++..+++.+..++..
T Consensus       396 ~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  433 (438)
T TIGR00712       396 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  433 (438)
T ss_pred             hhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999988999999887776666555544433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.09  E-value=4.9e-10  Score=107.38  Aligned_cols=174  Identities=15%  Similarity=0.100  Sum_probs=129.2

Q ss_pred             CcccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhh
Q 043156           15 RPAVKYKHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFK   94 (578)
Q Consensus        15 ~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~   94 (578)
                      .|..+..+.+....|.+..+.+......+=..+.-+.++++.+|+|+..++.+.+.........+++.|.++|++ ||+.
T Consensus       253 ~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~  331 (459)
T KOG4686|consen  253 EPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNL  331 (459)
T ss_pred             CcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-ccee
Confidence            355555667777788888877777666666667788999999999999999999999999999999999999998 9998


Q ss_pred             hhhhhhhhhc-cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHH
Q 043156           95 AVLISGSVEF-LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLL  173 (578)
Q Consensus        95 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~  173 (578)
                      ..+.+..+.. .+...+          .  .+...=+++..++|+...+...+..+.++...|+++      .+++++..
T Consensus       332 ~wv~~a~~~tl~~H~~l----------~--Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~  393 (459)
T KOG4686|consen  332 WWVASACILTLLGHSGL----------F--FTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFI  393 (459)
T ss_pred             hhHHHHHHHHHHHhhhH----------H--hhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHH
Confidence            8877765555 222221          1  111112345556666665555555666777788776      99999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccC---chhHHHHHHHH
Q 043156          174 FLAVCIGGAISVTLIVWIQDNKG---WDRGFGLSSVA  207 (578)
Q Consensus       174 ~~~~~lG~~~~p~l~~~l~~~~g---~~~~f~i~~~~  207 (578)
                      +...|+|-++.|+++|.+.++-|   |--.|++....
T Consensus       394 qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~  430 (459)
T KOG4686|consen  394 QSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL  430 (459)
T ss_pred             HHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence            99999999999999999988644   43345444333

>PRK10504 putative transporter; Provisional

Probab=99.08  E-value=1.3e-09  Score=117.85  Aligned_cols=157  Identities=15%  Similarity=-0.009  Sum_probs=120.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      .....+...++...++.....+.+.|++..+|.+..+++++.....++..++.++.|+++||+ |||+++.++.++..++
T Consensus       262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~  340 (471)
T PRK10504        262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV  340 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            344555566666666665556778888888999999999999888888888889999999998 9999998887766644


Q ss_pred             CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVT  186 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~  186 (578)
                      .++..       ......+...+.+..++.|++.+...+....++.+..|+++      |+.++++.+....+|..+|+.
T Consensus       341 ~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~ig~~  407 (471)
T PRK10504        341 SLLFM-------LVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSMIMQLSMSIGVT  407 (471)
T ss_pred             HHHHH-------hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHHHHHHHHHHHHH
Confidence            33320       00112233334455667788888888888889999999876      999999999999999999999


Q ss_pred             HHHHhccccCc
Q 043156          187 LIVWIQDNKGW  197 (578)
Q Consensus       187 l~~~l~~~~g~  197 (578)
                      ++|.+.+..|+
T Consensus       408 i~g~ll~~~g~  418 (471)
T PRK10504        408 IAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHhhh
Confidence            99988765554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.06  E-value=1.3e-09  Score=114.57  Aligned_cols=171  Identities=12%  Similarity=0.017  Sum_probs=115.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPP  107 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~  107 (578)
                      .+......++.....+....+++.|+.+.+|++..+.+.+.+...++..++.++.|+++||+ |+|+.+.++..+..++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            34444444444455555567778899888999999999999999999999999999999998 99999988877666543


Q ss_pred             cccccCCCCCccccccchhHHHHHHHHHHHHhccccccccc-cccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 043156          108 PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALP-PYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVT  186 (578)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~-~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~  186 (578)
                      ++.        . ...++.....+..++.++|.+...+... ....+..+++.      ++.+  ..+...++|..+||.
T Consensus       280 ~~~--------~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~g~~~Gp~  342 (382)
T PRK10091        280 LML--------F-FFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQIAFNLGSAIGAY  342 (382)
T ss_pred             HHH--------H-HHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHHHHHHHHHHHHHH
Confidence            322        0 1122333344444455555544333323 33334333332      4433  346677999999999


Q ss_pred             HHHHhccc-cCchhHHHHHHHHHHHHHHHHH
Q 043156          187 LIVWIQDN-KGWDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       187 l~~~l~~~-~g~~~~f~i~~~~~~~~~~~~~  216 (578)
                      ++|++.+. .+|+..+.+.++..++......
T Consensus       343 ~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        343 CGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             HhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence            99999885 6799999988776555444433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.04  E-value=1.8e-09  Score=110.06  Aligned_cols=162  Identities=14%  Similarity=0.061  Sum_probs=120.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGV--LHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE  103 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~  103 (578)
                      |..+...+..++....--++..+.+.|+.+.  +|++.++.+...+.+..+..++.+++++++||+ |+||++.++.++.
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~  218 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence            3444444444444445556678899999854  799999999999999999999999999999998 9999998887766


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      +++.++.          ....+.. ...+..+.|++.+..+|...+...+.+|++.       +++.++. ....+|+++
T Consensus       219 ~~~~~l~----------~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~asai~-~~~~~Gg~i  279 (310)
T TIGR01272       219 VLLSIGA----------ALTHGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGSGIL-CLAIVGGAI  279 (310)
T ss_pred             HHHHHHH----------HHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHH-HHHHhcchH
Confidence            6443322          1111222 2235557889999999999999989888653       4444554 566799999


Q ss_pred             HHHHHHHhccccCchhHHHHHHHH
Q 043156          184 SVTLIVWIQDNKGWDRGFGLSSVA  207 (578)
Q Consensus       184 ~p~l~~~l~~~~g~~~~f~i~~~~  207 (578)
                      .|.+.|++.+..|.+..|++..++
T Consensus       280 ~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       280 VPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHH
Confidence            999999999988988888765444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00896 CynX cyanate transporter

Probab=99.03  E-value=1.5e-09  Score=112.77  Aligned_cols=156  Identities=11%  Similarity=0.026  Sum_probs=114.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |..+.+.+..++....++....++|.|+++ .|+|..+.+.+.+.+.++..++.++.|+++||+-+||+++.++.++..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  275 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV  275 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence            345555556666677788888899999864 7999999999999999999999999999999972355566666665554


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      +.+++          ....+.... ...++.|++.|...|...+.+.+..++++     +++..+++.+...++|..++|
T Consensus       276 ~~~~~----------~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~gp  339 (355)
T TIGR00896       276 GLCGL----------LFAPMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMAQSIGYLLAALGP  339 (355)
T ss_pred             HHHHH----------HHhhhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            43332          111111111 13456788998888877777766665443     378888998888899999999


Q ss_pred             HHHHHhccccC-ch
Q 043156          186 TLIVWIQDNKG-WD  198 (578)
Q Consensus       186 ~l~~~l~~~~g-~~  198 (578)
                      .+.|++.+++| |.
T Consensus       340 ~~~G~l~~~~g~~~  353 (355)
T TIGR00896       340 LFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHHHHhcccC
Confidence            99999988765 54

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.03  E-value=5.1e-10  Score=116.57  Aligned_cols=162  Identities=12%  Similarity=0.124  Sum_probs=116.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhh-h-hhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLIS-G-SVE  103 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~-~-~~~  103 (578)
                      |.++.+.+..++.....+.+..+.+.|+++++|++..+.+...+.+.++..++.++.|+++||..+||+..... . ...
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            44666667777777777788889999999999999999999999999999999999999999852333332211 1 111


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      ..+....        ......+.....+..++.|+......+....++.|.+|+++      |+++.++++...++|..+
T Consensus       296 ~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~  361 (379)
T TIGR00881       296 IVSLLVY--------WLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFVGFFAYLGGIL  361 (379)
T ss_pred             HHHHHHH--------hcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHHHHhhhhhhhh
Confidence            1111110        00112233334444455555444444555677899999887      999999999999999999


Q ss_pred             HHHHHHHhccccCchhHH
Q 043156          184 SVTLIVWIQDNKGWDRGF  201 (578)
Q Consensus       184 ~p~l~~~l~~~~g~~~~f  201 (578)
                      +|.+.|++.+++||+..|
T Consensus       362 ~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       362 AGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             hhhhHHHHHHhhcccccC
Confidence            999999999999998754

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.03  E-value=1.2e-09  Score=113.35  Aligned_cols=154  Identities=13%  Similarity=0.006  Sum_probs=124.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           26 KTSLLILAAFGFENLATIALG-VNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~-~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      |.++.++...++....+.... .+.|.|.++.+|.+..+.+.+.....++..++.++.|+++||+ |||+.+..+..+..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence            345555556666666666665 6777777777999999999999999999999999999999998 99999888766555


Q ss_pred             cCCcccccCCCCCccccccc-hhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGS-DAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      ++.++.          .... +...+++..++.|++.+...+...+++.|.+|+++      |++.+++++...++|..+
T Consensus       289 ~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~  352 (365)
T TIGR00900       289 LAILVV----------GLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQFSLSHAAWPL  352 (365)
T ss_pred             HHHHHH----------HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHH
Confidence            433332          1122 36667788888999999999999999999999876      999999999999999999


Q ss_pred             HHHHHHHhccccC
Q 043156          184 SVTLIVWIQDNKG  196 (578)
Q Consensus       184 ~p~l~~~l~~~~g  196 (578)
                      +|.++|++.+++|
T Consensus       353 g~~~~g~l~~~~g  365 (365)
T TIGR00900       353 GLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999987653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.02  E-value=2e-09  Score=113.84  Aligned_cols=170  Identities=14%  Similarity=0.096  Sum_probs=124.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVL---HLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      .+..++..+.....+.......+.|+.+.+   +.+....+.+.+...+...++.++.|++.||+ |||+.+.++.++..
T Consensus       217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~  295 (396)
T TIGR00882       217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMS  295 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHH
Confidence            344444444444444445456778877665   55667788888888889999999999999998 99999998887776


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHH-HHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNL-LFLAVCIGGAI  183 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~-~~~~~~lG~~~  183 (578)
                      +...+.          ....+...+++..++.+++..........+..+..+++.      |++..+. ++....+|..+
T Consensus       296 l~~~~~----------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~~~~~~lg~~~  359 (396)
T TIGR00882       296 VRIIGS----------SFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGFQFAKQLAMIF  359 (396)
T ss_pred             HHHHHH----------HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHHHHHHHHHHHH
Confidence            543332          223456666777888888776655555566777777665      6776666 67889999999


Q ss_pred             HHHHHHHhccccCchhHHHHHHHHHHHHHHH
Q 043156          184 SVTLIVWIQDNKGWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       184 ~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~  214 (578)
                      +|.++|++.+..||+..|.+.+++.++..+.
T Consensus       360 ~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       360 LSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            9999999999889999999988776555443

>TIGR00895 2A0115 benzoate transport

Probab=99.01  E-value=1.1e-09  Score=114.83  Aligned_cols=148  Identities=16%  Similarity=0.017  Sum_probs=114.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      +..+.+....++....++....+.+ ++.+++|.+..+.+...+...++..++.+++|+++||+ |||+......+....
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  327 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVF  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHH
Confidence            3445555556666777777777777 77788999999999999999999999999999999998 998555443333222


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      ..++.          ....+....++..++.|++.+...+...+++.|.+|+++      |++++++++...++|..++|
T Consensus       328 ~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~g~  391 (398)
T TIGR00895       328 AVLVG----------STLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGIGRLGAIIGP  391 (398)
T ss_pred             HHHHH----------HHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence            21111          112344556677788899999889999999999999876      99999999999999999999


Q ss_pred             HHHHHh
Q 043156          186 TLIVWI  191 (578)
Q Consensus       186 ~l~~~l  191 (578)
                      .++|++
T Consensus       392 ~~~G~l  397 (398)
T TIGR00895       392 ILAGYL  397 (398)
T ss_pred             HhHHhc
Confidence            999876

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.00  E-value=1.5e-08  Score=108.20  Aligned_cols=162  Identities=18%  Similarity=0.125  Sum_probs=112.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhc--cc--hhhhhhhhhhhhccCCcccccCCCCCcccccc
Q 043156           48 NLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAF--IG--RFKAVLISGSVEFLPPPCNVFDPTAGCKKIEG  123 (578)
Q Consensus        48 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~--~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (578)
                      ....|+++++|+++++.....+...+--.+ -++.|.++|-+  .|  ||.-++++.++.+...+.+.      ......
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~------~~~~~~   83 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLA------LLPASE   83 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHH------hccccc
Confidence            344688999999999988777766555444 45668999986  23  34444556555532222210      011122


Q ss_pred             chhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHH
Q 043156          124 SDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGL  203 (578)
Q Consensus       124 ~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i  203 (578)
                      .+.....+..++..+|......+.-+++.|....+.    +.|+...+..+....+|.+++..++|.+.+..+++..|.+
T Consensus        84 ~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p----~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i  159 (433)
T PF03092_consen   84 SSAAIAVVLLFLASFGYAFADVAADALVVELARREP----ESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLI  159 (433)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC----chhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehH
Confidence            344555566677888888888889999999886553    1278888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCC
Q 043156          204 SSVAVFLATIIFAAGLP  220 (578)
Q Consensus       204 ~~~~~~~~~~~~~~~~~  220 (578)
                      .++...+..+..++..+
T Consensus       160 ~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  160 SAALPLLMLIVALFLLE  176 (433)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            88776655544444444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.99  E-value=1.8e-09  Score=117.04  Aligned_cols=156  Identities=13%  Similarity=0.051  Sum_probs=124.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |..+...+..++..+.+++...++|.|+++.+|.+..++++......++..++.++.|++.||+ |||+.+.++.++..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            3455556667777788888888999999999999999999999999999999999999999998 999999888877765


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      +..+..      .......+...+....++.|+|.+...+.......+..|+++      |+++.++++...++|+.+|+
T Consensus       334 ~~~~~~------~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~ig~  401 (485)
T TIGR00711       334 GFYWRA------FTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNFTRQLGGSIGT  401 (485)
T ss_pred             HHHHHh------ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHHHHHHHHHHHH
Confidence            544320      001112344555666778899988877776777778888776      99999999999999999999


Q ss_pred             HHHHHhccc
Q 043156          186 TLIVWIQDN  194 (578)
Q Consensus       186 ~l~~~l~~~  194 (578)
                      .+.+.+.++
T Consensus       402 ~i~g~~~~~  410 (485)
T TIGR00711       402 ALITTILTN  410 (485)
T ss_pred             HHHHHHHHH
Confidence            999988764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.98  E-value=4.9e-09  Score=111.75  Aligned_cols=147  Identities=20%  Similarity=0.185  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccc
Q 043156           41 ATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKK  120 (578)
Q Consensus        41 ~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (578)
                      ..+.+..+++.|+++ .|.+..+.+.+.+...++..++.++.|+++||+ |||+++..+.++..+..+..       . .
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~-------~-~  315 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPL-------F-R  315 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHH-------H-H
Confidence            334456778888875 699999999999999999999999999999998 99999988876655332221       0 0


Q ss_pred             cccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhH
Q 043156          121 IEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRG  200 (578)
Q Consensus       121 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~  200 (578)
                      ........+....+..+.+.....+..+.++.|.+|++.      |++++|+.+...++|+.++|.+.|++.+++|+...
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~  389 (426)
T PRK12307        316 IPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA  389 (426)
T ss_pred             HccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence            111122111111222222222334455678899999876      99999999999999999999999999998886654


Q ss_pred             HHH
Q 043156          201 FGL  203 (578)
Q Consensus       201 f~i  203 (578)
                      .++
T Consensus       390 ~~~  392 (426)
T PRK12307        390 LTF  392 (426)
T ss_pred             HHH
Confidence            333

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.96  E-value=7.2e-09  Score=112.00  Aligned_cols=177  Identities=18%  Similarity=0.029  Sum_probs=123.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhh--------h
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAV--------L   97 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~--------~   97 (578)
                      +.+|...+..++....++.+..++|.|+++.+|.+..+.++..+...++..++.+++|+++||+ ++|+..        .
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~  339 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF  339 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence            5578888888888889999999999999999999999999999999999999999999999997 655321        1


Q ss_pred             hhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHH
Q 043156           98 ISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAV  177 (578)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~  177 (578)
                      .+......+..+.       +......+....++...+.+.+.+...+.......|..|. .      ++...++.+...
T Consensus       340 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~  405 (465)
T TIGR00894       340 NGIGGLGPGIFAY-------ALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F------LGFIKGITGLPG  405 (465)
T ss_pred             HHHHHHHHHHHHH-------HHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H------HHHHHHHHHHHH
Confidence            1111100000000       0001112233333334444444444455555555666664 3      899999999999


Q ss_pred             HHHHHHHHHHHHHhcccc---CchhHHHHHHHHHHHHHHHHHh
Q 043156          178 CIGGAISVTLIVWIQDNK---GWDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       178 ~lG~~~~p~l~~~l~~~~---g~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      ++|+.++|.+.|++.+..   +|+..|.+.++..+++.++...
T Consensus       406 ~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       406 FIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            999999999999987643   3888999888777776655544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.96  E-value=6.2e-09  Score=110.58  Aligned_cols=188  Identities=7%  Similarity=-0.068  Sum_probs=127.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      ++.|.+.+..++..-+|.+...++|.|+++.+  +............+...+..|++|++|||+ |+||++.++.+...+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i  328 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI  328 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence            45788888888877777777778999988765  333333334455688999999999999998 999999988876664


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCC----------ChH-----HHhhhhhHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEK----------DPI-----EARQMSSFF  170 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~----------~~~-----~~~~R~~~~  170 (578)
                      ......    .........+...+.+..+...++.|.-..+...++.+.+|++          ..+     .+++-+...
T Consensus       329 ~~~~~~----l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~  404 (462)
T PRK15034        329 FSALLF----LTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAAL  404 (462)
T ss_pred             HHHHHH----HHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHH
Confidence            332210    0001111234556666666666777777778888888888741          000     011245667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccC-chhHHHHHHHHHHHHHHHHHhcCC
Q 043156          171 NLLFLAVCIGGAISVTLIVWIQDNKG-WDRGFGLSSVAVFLATIIFAAGLP  220 (578)
Q Consensus       171 ~~~~~~~~lG~~~~p~l~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~  220 (578)
                      |+......+|+.+-|.+.|+..+..| +...|++..+..+++.++.++...
T Consensus       405 G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~  455 (462)
T PRK15034        405 GFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG  455 (462)
T ss_pred             HHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            78888889988899988777766544 888888888887777777666543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.95  E-value=2.4e-09  Score=114.50  Aligned_cols=162  Identities=20%  Similarity=0.126  Sum_probs=118.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |..+.+++..++....++......+.|.+..++ +..+.+++.....++..++.++.|+++||+ |||+++.++.++..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            455566666777777766655555555555566 566777888888899999999999999998 999999998877765


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChH-HHhhhhhHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPI-EARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~-~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      +.++..         ....+...+++..++.+++.+...+...++++|..|.++.+ .+++++..+++++...++|..++
T Consensus       300 ~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg  370 (437)
T TIGR00792       300 GYLIFF---------FAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALA  370 (437)
T ss_pred             HHHHHH---------HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence            543320         11134455666777788999888888899999987633210 01136889999999999999999


Q ss_pred             HHHHHHhccccCch
Q 043156          185 VTLIVWIQDNKGWD  198 (578)
Q Consensus       185 p~l~~~l~~~~g~~  198 (578)
                      +.+.|++.+..||.
T Consensus       371 ~~i~g~ll~~~G~~  384 (437)
T TIGR00792       371 GFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHcCCC
Confidence            99999998776663

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.94  E-value=1.2e-07  Score=104.02  Aligned_cols=193  Identities=17%  Similarity=0.183  Sum_probs=144.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      .|.+..++....+....+.+......+.+.+.+++++++.|++.+.+-++..+...+..|.+-|. =|-|.+-+|+++++
T Consensus        95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMG  173 (735)
T ss_pred             cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHH
Confidence            35555555555555555557778888899999999999999999999999999999999999996 77777777777776


Q ss_pred             cCCccccc-----CC-------------CC--------------Cccc---------cccc-hhHHHHHHHHHHHHhccc
Q 043156          105 LPPPCNVF-----DP-------------TA--------------GCKK---------IEGS-DAALLFVALYLIATGTAG  142 (578)
Q Consensus       105 ~~~~~~~~-----~~-------------~~--------------~~~~---------~~~~-~~~~~~~~~~l~g~g~g~  142 (578)
                      ++.++..+     .+             ..              .+..         .... -+.+++.+.++.|+|...
T Consensus       174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp  253 (735)
T KOG3626|consen  174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP  253 (735)
T ss_pred             HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence            55544321     00             00              0000         0011 233677899999999999


Q ss_pred             cccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------------------ccC-chhHHHH
Q 043156          143 IKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQD------------------NKG-WDRGFGL  203 (578)
Q Consensus       143 ~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~------------------~~g-~~~~f~i  203 (578)
                      .+|...+++=|-..+++      -...+|+.+.+..+|+++|.++++++.+                  +.| |...|++
T Consensus       254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi  327 (735)
T KOG3626|consen  254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI  327 (735)
T ss_pred             CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence            99999999999888776      6889999999999999999999987742                  123 7778888


Q ss_pred             HHHHHHHHHHHHHhcCCCcee
Q 043156          204 SSVAVFLATIIFAAGLPLYRF  224 (578)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~  224 (578)
                      ++.+.++..+.++++.+..++
T Consensus       328 ~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  328 CGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             HHHHHHHHHHHHHhCcccCcc
Confidence            888888877777776555443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.94  E-value=3.5e-09  Score=115.41  Aligned_cols=154  Identities=10%  Similarity=-0.039  Sum_probs=124.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |.........++....+++...+++.|+++.+|.|..++|.....+.++..++.+++|++.||+ |||+.+..+.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3445555666677777788888899999999999999999999999999999999999999998 999998888777665


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      +.+++       .......+........++.|+|.|...+.....+.+..|+++      ++.+.++++...++|..+|+
T Consensus       338 ~~~~l-------~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~lG~~~G~  404 (495)
T PRK14995        338 SFYGL-------AMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETMAYELGAGLGI  404 (495)
T ss_pred             HHHHH-------HHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHHHHHHHHHHHH
Confidence            54332       001122334445667788899999988888888888888776      99999999999999999999


Q ss_pred             HHHHHhcc
Q 043156          186 TLIVWIQD  193 (578)
Q Consensus       186 ~l~~~l~~  193 (578)
                      .+.+.+.+
T Consensus       405 ai~g~i~~  412 (495)
T PRK14995        405 AIFGLLLS  412 (495)
T ss_pred             HHHHHHHH
Confidence            99998865

>PRK10054 putative transporter; Provisional

Probab=98.94  E-value=3.9e-09  Score=111.56  Aligned_cols=173  Identities=12%  Similarity=-0.059  Sum_probs=125.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNG--VLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE  103 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~--~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~  103 (578)
                      |..+...+..++..+.+.....+.+.|+..  +.+.+....+.+............++.|++.||+ |+|+.+.++.++.
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~  284 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF  284 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence            344445455555555555444566666643  3455666778888888777777788899999998 9999998887766


Q ss_pred             ccCCcccccCCCCCccccc-cchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIE-GSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                      .++..+.          .. ..+...+.+..++.++|.+...|...+++.+..|++.      |++.++... ...+|..
T Consensus       285 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~~-~~~~G~~  347 (395)
T PRK10054        285 VIGLVGF----------IFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQS-LGWLGAA  347 (395)
T ss_pred             HHHHHHH----------HHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHHH-HHHHHHH
Confidence            6554332          11 2345556667788899998888888899999999876      888888654 5668999


Q ss_pred             HHHHHHHHhccccCchhHHHHHHHHHHHHHHHHH
Q 043156          183 ISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       183 ~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  216 (578)
                      +||.++|++.++.|....|++.+....++.+..+
T Consensus       348 ~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        348 INPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999988888887666555554444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.93  E-value=1.3e-10  Score=126.48  Aligned_cols=178  Identities=15%  Similarity=0.112  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCcc
Q 043156           40 LATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCK  119 (578)
Q Consensus        40 ~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (578)
                      ....+......+-+++.++++++++|++.+.+-++..+..++..|+++|. -|-|.+-+|.+++++|.++..+ |++...
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l-Phf~~~   93 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL-PHFLSG   93 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc-cHhhcC
Confidence            55666666666788999999999999999999999999999999999996 7777777888888877666431 211100


Q ss_pred             --------------------c---------------------cccchhHHHHHHHHHHHHhccccccccccccccCCCCC
Q 043156          120 --------------------K---------------------IEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEK  158 (578)
Q Consensus       120 --------------------~---------------------~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~  158 (578)
                                          .                     ....-...++++.++.|+|....++...+|+=|-.+++
T Consensus        94 ~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~  173 (539)
T PF03137_consen   94 PYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK  173 (539)
T ss_dssp             ----------------------------------------------------------SSS-------------------
T ss_pred             CCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc
Confidence                                0                     00012467888999999999999999999999999988


Q ss_pred             ChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc---------------------cC-chhHHHHHHHHHHHHHHHHH
Q 043156          159 DPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDN---------------------KG-WDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       159 ~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~---------------------~g-~~~~f~i~~~~~~~~~~~~~  216 (578)
                      +      -....|+++.+..+|.++|.++++.+.+.                     .| |...|.+.+++.++..+-++
T Consensus       174 ~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~  247 (539)
T PF03137_consen  174 N------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF  247 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7      68889999999999999999888766421                     13 66777777777666665555


Q ss_pred             hcCCCceec
Q 043156          217 AGLPLYRFQ  225 (578)
Q Consensus       217 ~~~~~~~~~  225 (578)
                      .+.++.++.
T Consensus       248 ~FPk~lp~~  256 (539)
T PF03137_consen  248 FFPKKLPGT  256 (539)
T ss_dssp             ---------
T ss_pred             cCCccCCCc
Confidence            555554443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.92  E-value=1.1e-08  Score=111.12  Aligned_cols=168  Identities=14%  Similarity=0.078  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccc
Q 043156           32 LAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNV  111 (578)
Q Consensus        32 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~  111 (578)
                      +...++..+....+...+|.+.++.+|.+....|++.+.+.++..++.++.+++.+|+ ++++.+..+.+++++..+.+ 
T Consensus       224 l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l-  301 (524)
T PF05977_consen  224 LLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL-  301 (524)
T ss_pred             HHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH-
Confidence            3333444444445556788899999999999999999999999999999999999997 99999888887777554443 


Q ss_pred             cCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 043156          112 FDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWI  191 (578)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l  191 (578)
                               +...+.+..++..++.|++.....+...+.+.+..|++.      |+|.+++++...+.+..+|..+.|.+
T Consensus       302 ---------al~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~~g~~~lGsll~G~l  366 (524)
T PF05977_consen  302 ---------ALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVFFGGMPLGSLLWGFL  366 (524)
T ss_pred             ---------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     455677777788888899888888888888999999886      99999999999999999999999999


Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHH
Q 043156          192 QDNKGWDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       192 ~~~~g~~~~f~i~~~~~~~~~~~~~  216 (578)
                      .+.+|-+..+.++++..+++.++..
T Consensus       367 a~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  367 ADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888776655555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10133 L-fucose transporter; Provisional

Probab=98.90  E-value=1.1e-08  Score=109.59  Aligned_cols=163  Identities=15%  Similarity=0.093  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcc
Q 043156           31 ILAAFGFENLATIALGVNLVTYF-NGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPC  109 (578)
Q Consensus        31 l~~~~~~~~~~~~~~~~~l~~yl-~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~  109 (578)
                      ..+..++.....++...+.+.|+ ++.+|++..+++.....+.++..++.+++|+++||+ ||||++..+.++.+.+.++
T Consensus       263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~  341 (438)
T PRK10133        263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLI  341 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence            34444555566666667888885 567899999999999999999999999999999998 9999988887665533322


Q ss_pred             cccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043156          110 NVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIV  189 (578)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~  189 (578)
                      .          ...++. ..+....+.|++.+..+|...+...|.+|++.       +.+.++... ..+|+.++|.+.|
T Consensus       342 ~----------~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~~~-~~~g~~~~~~i~G  402 (438)
T PRK10133        342 S----------AFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFIVM-TIIGGGIVTPVMG  402 (438)
T ss_pred             H----------HHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHHhH-HhccchHHHHHHH
Confidence            1          111122 12455677899999999999999999988643       555555543 4467888889999


Q ss_pred             HhccccC-chhHHHHHHHHHHHHHH
Q 043156          190 WIQDNKG-WDRGFGLSSVAVFLATI  213 (578)
Q Consensus       190 ~l~~~~g-~~~~f~i~~~~~~~~~~  213 (578)
                      ++.+..| -+..|.+..++.+....
T Consensus       403 ~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        403 FVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHH
Confidence            9988887 78888776665444433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.90  E-value=6.3e-09  Score=113.63  Aligned_cols=170  Identities=12%  Similarity=0.029  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHhHHHHHhhhccchhhhhhhh
Q 043156           32 LAAFGFENLATIALGVNLVTYFNGVLHLDLAEAAN------------QVTNYMGTSYILSIVVALLADAFIGRFKAVLIS   99 (578)
Q Consensus        32 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~------------~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~   99 (578)
                      ....+...+.+|++..+.|.+++ ++|++..+.+.            ......++..++.+++++++||+ |||++++++
T Consensus       294 ~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~  371 (502)
T TIGR00887       294 AGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMG  371 (502)
T ss_pred             HHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHH
Confidence            33445556778888777888774 67886543221            12233445566788899999998 999999888


Q ss_pred             hhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH
Q 043156          100 GSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI  179 (578)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l  179 (578)
                      .++.++...++.      .......+...+....+...++.....+....+.+|.+|++.      |+++.++.+....+
T Consensus       372 ~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~g~~~~~~~~  439 (502)
T TIGR00887       372 FFILTVLFFVLG------FAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTAHGISAASGKA  439 (502)
T ss_pred             HHHHHHHHHHHH------HHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHHHHHHHHHhhh
Confidence            766654332220      000000111111111111222222344566777899999987      99999999999999


Q ss_pred             HHHHHHHHHHHhccc----------cCchhHHHHHHHHHHHHHHHH
Q 043156          180 GGAISVTLIVWIQDN----------KGWDRGFGLSSVAVFLATIIF  215 (578)
Q Consensus       180 G~~~~p~l~~~l~~~----------~g~~~~f~i~~~~~~~~~~~~  215 (578)
                      |++++|.+.+++.+.          .++...|++.+++.+++.+..
T Consensus       440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  485 (502)
T TIGR00887       440 GAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT  485 (502)
T ss_pred             HHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence            999999999998763          344567777776666554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.89  E-value=3.1e-08  Score=104.67  Aligned_cols=166  Identities=8%  Similarity=0.029  Sum_probs=119.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      .++..+...+.....+++...+++.++.+++|++..+.+.+...+.++..++.++.|++.||. +|+..+ .+..+....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~-~~~~~~~~~  294 (394)
T PRK10213        217 GVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALA-GAPLVLAVS  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHH-HHHHHHHHH
Confidence            344444444555555666666765555678899999999999999999999999999999995 554433 333332211


Q ss_pred             -CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          107 -PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       107 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                       .++.          ....+.+.+.+..++.|++.+...+...+++.+..|++       +++..+.+....++|..+||
T Consensus       295 ~~~l~----------~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~lg~~~G~  357 (394)
T PRK10213        295 ALVLT----------LWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQVAVIQLANTCGA  357 (394)
T ss_pred             HHHHH----------HHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHHHHHHHHHHHHHH
Confidence             1111          12234556667778889999988888888888888743       46777777788899999999


Q ss_pred             HHHHHhccccCchhHHHHHHHHHHHH
Q 043156          186 TLIVWIQDNKGWDRGFGLSSVAVFLA  211 (578)
Q Consensus       186 ~l~~~l~~~~g~~~~f~i~~~~~~~~  211 (578)
                      .++|++.+..|++..+...+.+.++.
T Consensus       358 ~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        358 AIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHhccChhhHHHHHHHHHHHH
Confidence            99999999899998888876654443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.89  E-value=2.1e-08  Score=108.61  Aligned_cols=155  Identities=9%  Similarity=-0.059  Sum_probs=107.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHH
Q 043156           51 TYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLF  130 (578)
Q Consensus        51 ~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (578)
                      .++.+++|.+.....+......+...++.+++|+++||+ |||+.++++.++.+++.+++..     ......... ...
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~-----~~~~~~~~~-~~~  367 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGT-----AFYTQAPGI-VAL  367 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHH-----HHhcCcccH-HHH
Confidence            344567898887777777778888999999999999998 9999999988887755433200     000111111 222


Q ss_pred             HHHHHHHHhccc-cccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH------hccccCchhHHHH
Q 043156          131 VALYLIATGTAG-IKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVW------IQDNKGWDRGFGL  203 (578)
Q Consensus       131 ~~~~l~g~g~g~-~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~------l~~~~g~~~~f~i  203 (578)
                      ....+.+.+.+. ..|...+++.|.+|+++      |++++++.+...++|.++++.+.+.      +.++++|+..|++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  441 (479)
T PRK10077        368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWI  441 (479)
T ss_pred             HHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHH
Confidence            333344444443 34677899999999876      9999999999988888888666554      4456788888988


Q ss_pred             HHHHHHHHHHHHHhc
Q 043156          204 SSVAVFLATIIFAAG  218 (578)
Q Consensus       204 ~~~~~~~~~~~~~~~  218 (578)
                      .++..+++.+..++.
T Consensus       442 ~~~~~~~~~~~~~~~  456 (479)
T PRK10077        442 YGCMGVLAALFMWKF  456 (479)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            877666655554443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.86  E-value=1.6e-08  Score=121.60  Aligned_cols=164  Identities=13%  Similarity=0.039  Sum_probs=127.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLA-EAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~-~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      .++..++..++.....+....+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++++.++.++.++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~  311 (1146)
T PRK08633        233 VLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLAL  311 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHH
Confidence            344444445555555566677889999999999999 999999999999999999999999998 999988887776664


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      +.++.          ....+...+++..++.|++.++..+...+++.+.+|++.      |++++++++...++|.++++
T Consensus       312 ~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~~~~lg~~~~~  375 (1146)
T PRK08633        312 SLFLL----------PTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNFLQNVGMLLFL  375 (1146)
T ss_pred             HHHHH----------HHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHHHHHHHHHHHH
Confidence            44332          223456667777888899999888888999999999887      99999999999999998888


Q ss_pred             HHHHHhcc-ccCchhHHHHHHHH
Q 043156          186 TLIVWIQD-NKGWDRGFGLSSVA  207 (578)
Q Consensus       186 ~l~~~l~~-~~g~~~~f~i~~~~  207 (578)
                      .+++.+.. .+++...|++.+.+
T Consensus       376 ~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        376 ALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHH
Confidence            88776654 23455566555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.86  E-value=2.9e-08  Score=105.21  Aligned_cols=155  Identities=12%  Similarity=0.086  Sum_probs=105.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccc-cc
Q 043156           47 VNLVTYFNGVLHLDLAEAANQVTNYM-GTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIE-GS  124 (578)
Q Consensus        47 ~~l~~yl~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  124 (578)
                      .+.+.|+.+++|++.++.+++.+... ++..++.+++|+++||+ ||||.+.++.++..+..+..       ..... ..
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~-------~~~~~~~~  301 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGY-------WVLAVTPK  301 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH-------HHHHhcCC
Confidence            34455777889999999999987654 46889999999999998 99998877666544322111       00011 12


Q ss_pred             hhHHHHHHH----HHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhH
Q 043156          125 DAALLFVAL----YLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRG  200 (578)
Q Consensus       125 ~~~~~~~~~----~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~  200 (578)
                      +.+.+++..    +..+++.+...+....++.+.+|+++      +    +++....++|..+++.++|++.+..||+..
T Consensus       302 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~  371 (402)
T PRK11902        302 HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYVGPTSGYLVEAYGWPGF  371 (402)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            333334333    34556666667777788888877543      3    444445567777666789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcC
Q 043156          201 FGLSSVAVFLATIIFAAGL  219 (578)
Q Consensus       201 f~i~~~~~~~~~~~~~~~~  219 (578)
                      |.+.+++.+++.++.+...
T Consensus       372 f~~~~~~~~~~~~~~~~~~  390 (402)
T PRK11902        372 YLMTVVIALPGLALLWLMR  390 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9998887777665554433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.85  E-value=1.6e-08  Score=107.05  Aligned_cols=154  Identities=14%  Similarity=0.058  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCcccccc
Q 043156           44 ALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEG  123 (578)
Q Consensus        44 ~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (578)
                      ....++|.|+++..+ ++.+.+++.+....+......+.+++.||..+.++.+..+.++..++.++.          ...
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l----------~~~  294 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPI----------GMV  294 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH----------HHh
Confidence            345677888876655 677888888887776665555556665543276776777766666443332          223


Q ss_pred             chhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc---C-chh
Q 043156          124 SDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNK---G-WDR  199 (578)
Q Consensus       124 ~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~---g-~~~  199 (578)
                      ++...+.+...+.+++.+...|...+++.|..|+++      |++.+++++...++|..+||.++|++.++.   + ...
T Consensus       295 ~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~  368 (400)
T PRK11646        295 SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPEL  368 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcch
Confidence            445555666677888888888998999999999887      999999999999999999999999998763   3 355


Q ss_pred             HHHHHHHHHHHHHHH
Q 043156          200 GFGLSSVAVFLATII  214 (578)
Q Consensus       200 ~f~i~~~~~~~~~~~  214 (578)
                      .|.+.++..+++.+.
T Consensus       369 ~~~~~~~~~~~~~~~  383 (400)
T PRK11646        369 PWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            665555555555444

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.85  E-value=3.9e-08  Score=103.00  Aligned_cols=163  Identities=9%  Similarity=0.043  Sum_probs=113.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      ..+...+...+....++....+.+.|+++++|.++.+.+.+.+...++..++.++.|+++||+ |||+.+..+..+..++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~  285 (385)
T TIGR00710       207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS  285 (385)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            344445555555666677777788899889999999999999999999999999999999998 9999988877666544


Q ss_pred             CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH-HHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI-GGAISV  185 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l-G~~~~p  185 (578)
                      .++...     ...........++....+.|++.+...+.......|..|+ +      |+++.++++..... |+..+|
T Consensus       286 ~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~~~g~i~~~  353 (385)
T TIGR00710       286 AVLLEI-----TAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V------AGTASALFGTLRLVLGAIVGY  353 (385)
T ss_pred             HHHHHH-----HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c------chHHHHHHHHHHHHHHHHHHH
Confidence            332200     0000112334445556677888888888888888888773 3      89999988776654 555555


Q ss_pred             HHHHHhccccCchhHHHH
Q 043156          186 TLIVWIQDNKGWDRGFGL  203 (578)
Q Consensus       186 ~l~~~l~~~~g~~~~f~i  203 (578)
                       +.+.+.+..+|...+..
T Consensus       354 -~~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       354 -LVSLIHGNTAWPMSLSC  370 (385)
T ss_pred             -HHHhccccChHHHHHHH
Confidence             45555554445544433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.85  E-value=1.3e-08  Score=103.96  Aligned_cols=174  Identities=17%  Similarity=0.095  Sum_probs=141.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |.+..-+++.++-+=+-..+......|...++|+++.+...+.....+...+++++.|+|.||+ |-|+++.+++++..+
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~  330 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI  330 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence            3566666777777777777888889999999999999999999999999999999999999998 999999999988874


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      ..+..          .+......+++.-++.|+..|...+.+-++.++..|+++      -++.+|+|.........+||
T Consensus       331 ~~~~~----------~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp  394 (438)
T COG2270         331 AALYL----------IFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGP  394 (438)
T ss_pred             HHHHH----------HHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHH
Confidence            43332          112233445566677899999999999999999999987      69999999999999999999


Q ss_pred             HHHHHhccccC-chhHHHHHHHHHHHHHHHHH
Q 043156          186 TLIVWIQDNKG-WDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       186 ~l~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~  216 (578)
                      .+.+.+.+..| -|..+....++..++++.++
T Consensus       395 ~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~  426 (438)
T COG2270         395 FLVAVITQITGSSRAGVLSIIVLLLIGLLLLL  426 (438)
T ss_pred             HHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence            99998877654 67777666555556655443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.81  E-value=5.6e-09  Score=107.70  Aligned_cols=144  Identities=22%  Similarity=0.182  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLD-LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s-~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      +|.+....+...+.++....+++.|+.+++|.+ ..+.+.+.+...+...++.++.|+++||+ |+|+...+......+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILG  286 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHH
Confidence            344455555555677778889999999999999 89999999999999999999999999997 9887777766665533


Q ss_pred             CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      .+..       .......+....+...++.|++.+...+...+++.|.+|+++      |++..++.+...++|..+||
T Consensus       287 ~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  287 ALGL-------LLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHH-------CCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHCC
Confidence            3222       111222345566667788899999999999999999999886      99999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.81  E-value=2.5e-08  Score=119.75  Aligned_cols=175  Identities=11%  Similarity=-0.057  Sum_probs=130.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |.++..++..++..+.++++..++|.|+++.+|.+..+.+++.+.+.++..++.++.|+++|+. ++++.+..+.++..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            4566666666677777777888999999999999999999999999999999999999999987 776655554444332


Q ss_pred             CCcccccC-------CCCC-c--cccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHH
Q 043156          106 PPPCNVFD-------PTAG-C--KKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFL  175 (578)
Q Consensus       106 ~~~~~~~~-------~~~~-~--~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~  175 (578)
                      +.+.+.+.       +... .  ......+.+.+++..++.|++.++..+...+++.+.+|++.      |++++|..+.
T Consensus       304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~~~  377 (1140)
T PRK06814        304 FGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAANNV  377 (1140)
T ss_pred             HHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHHHH
Confidence            21111000       0000 0  00112455667778888899999999899999999999987      9999999999


Q ss_pred             HHHHHHHHHHHHHHHhcc-ccCchhHHHHHHHH
Q 043156          176 AVCIGGAISVTLIVWIQD-NKGWDRGFGLSSVA  207 (578)
Q Consensus       176 ~~~lG~~~~p~l~~~l~~-~~g~~~~f~i~~~~  207 (578)
                      ..++|..+++.+++.+.. ..++...|++.+++
T Consensus       378 ~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        378 LNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            999999999999998863 44666666655544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.80  E-value=6.2e-08  Score=103.59  Aligned_cols=163  Identities=18%  Similarity=0.148  Sum_probs=129.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |....+++..++..+......+..+.|.+..+|.+ ...+.+.....++..++.++.++++||+ ||||++..+.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            55666777888888888877788888888888877 5677888889999999999999999998 999999999998886


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHH-HhhhhhHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIE-ARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~-~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      +.++.        ......+.+.+++..++.|++.+...+...++++|..+..+-+. +++.+..++.+.+...+|..++
T Consensus       303 ~~~~~--------~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la  374 (428)
T PF13347_consen  303 GFLLL--------FFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLA  374 (428)
T ss_pred             HHHHH--------HHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHH
Confidence            65443        01111577888889999999999999999999999998553110 1224777888999999999999


Q ss_pred             HHHHHHhccccCch
Q 043156          185 VTLIVWIQDNKGWD  198 (578)
Q Consensus       185 p~l~~~l~~~~g~~  198 (578)
                      +.+.+.+.+..|+.
T Consensus       375 ~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  375 GAIVGLLLALVGYD  388 (428)
T ss_pred             HHHHHHHHHHhCcC
Confidence            99999886655543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.80  E-value=4.4e-09  Score=108.19  Aligned_cols=183  Identities=10%  Similarity=0.081  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhh
Q 043156          324 PIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQR  403 (578)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~  403 (578)
                      .+++...+-++--............+.+..     ....+.+...-.+..+++.|+.+.+.||+-||           +.
T Consensus        37 il~~vnlmny~Dr~~iagv~~~v~~~fni~-----~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~-----------~v  100 (493)
T KOG1330|consen   37 ILCLVNLMNYADRYTIAGVLKEVQTYFNIS-----DSELGLLQTVFIVVFMIASPLFGYLADRYNRK-----------RV  100 (493)
T ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHhcCCC-----chhccchhHHHHHHHHHHHHHHHHHHhhcCcc-----------eE
Confidence            344455555555455554433322222211     22345666777788899999999998877777           57


Q ss_pred             HhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhH
Q 043156          404 VGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKS  483 (578)
Q Consensus       404 ~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg  483 (578)
                      +.+|.++-+++.+..++..                        .+|.+.+.=.+.|+||....|...+++.+.+|+..|+
T Consensus       101 ~~vG~~iW~~Av~~~~fs~------------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs  156 (493)
T KOG1330|consen  101 IAVGIFIWTLAVFASGFSN------------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRS  156 (493)
T ss_pred             EeeHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhh
Confidence            8899999999999888865                        6777777889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q 043156          484 LSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTS  563 (578)
Q Consensus       484 ~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~  563 (578)
                      +..++++++..+|+.+|......+.+.+                 .+|++.|+..++++++..++..++.++-+++..++
T Consensus       157 ~~~~ify~~ipvGsglG~vvgs~va~~~-----------------~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~  219 (493)
T KOG1330|consen  157 RVLGIFYFAIPVGSGLGYVVGSVVASLT-----------------FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE  219 (493)
T ss_pred             HHHHHhhhhcccccceeEEeeeeeccCc-----------------cceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence            9999999999999999987766655222                 34778999999999999888877777655433333

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.80  E-value=4.6e-07  Score=91.44  Aligned_cols=152  Identities=18%  Similarity=0.117  Sum_probs=106.2

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHH
Q 043156           55 GVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALY  134 (578)
Q Consensus        55 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (578)
                      ++.|++..|++.+...-...+.+..++.|.++||+ ||||.-+..++++.+.-+           .-..+++..++++|+
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl-----------~k~~~~~~~L~~GRv  129 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCL-----------TKHSSNYPVLLLGRV  129 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHH-----------HHhccccHHHHHHHH
Confidence            57999999999999999999999999999999998 999999999988884422           245678999999999


Q ss_pred             HHHHhcccccccccc-ccccCCCCCChHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHhccccC--chhHHHHHHHHHHH
Q 043156          135 LIATGTAGIKAALPP-YGADQFDEKDPIEARQMSSFFNLLF-LAVCIGGAISVTLIVWIQDNKG--WDRGFGLSSVAVFL  210 (578)
Q Consensus       135 l~g~g~g~~~~~~~~-~v~~~~~~~~~~~~~~R~~~~~~~~-~~~~lG~~~~p~l~~~l~~~~g--~~~~f~i~~~~~~~  210 (578)
                      +.|++..+...+--+ ++.|.-....++  +-.+.-++... ....+-++.+..++-++.+..+  -..+|..+..+..+
T Consensus       130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~--~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~  207 (354)
T PF05631_consen  130 LGGIATSLLFSAFESWMVHEHNKRGFPQ--EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAV  207 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            999999887776544 344543222211  11333333333 2233344555556666666554  47889888887777


Q ss_pred             HHHHHHhcCC
Q 043156          211 ATIIFAAGLP  220 (578)
Q Consensus       211 ~~~~~~~~~~  220 (578)
                      +.+.+...++
T Consensus       208 ~~~~I~~~W~  217 (354)
T PF05631_consen  208 AAVLILKTWP  217 (354)
T ss_pred             HHHHHHhccc
Confidence            6665554433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.76  E-value=7.9e-08  Score=100.51  Aligned_cols=167  Identities=13%  Similarity=-0.011  Sum_probs=113.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchh---hhhhh-hhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRF---KAVLI-SGS  101 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr---~~~~~-~~~  101 (578)
                      |..|.+....++....+|++..++|.|++ +.|++.. .+.........+.++   .++++||. .||   +.... ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence            56788888899999999999999999996 4678864 555555555544444   57888886 554   33222 222


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      +.+++..+.          ....+....++...+.+++.....+...++.+|.+|++.      |+++.|+.+...++|+
T Consensus       266 ~~a~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~~G~~~~~g~~~~  329 (368)
T TIGR00903       266 LIAAFFLAL----------AFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKAAGAIGFTSRAIS  329 (368)
T ss_pred             HHHHHHHHH----------HHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcccchhhHHHHHHH
Confidence            222211111          111222233334444556666666777789999999987      9999999999999999


Q ss_pred             HHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHH
Q 043156          182 AISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFA  216 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  216 (578)
                      .++|.+.+.+..  +.+..|.+.++..+++.+..+
T Consensus       330 ~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       330 VALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            999999987774  667778777777666655543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.76  E-value=5.8e-08  Score=103.79  Aligned_cols=177  Identities=17%  Similarity=0.072  Sum_probs=121.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-------hhhhhh-
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIG-------RFKAVL-   97 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-------rr~~~~-   97 (578)
                      +.+|.+.+..+++..+++.+..++|.|+.+.||++..+.|+..++..+...+..+++|+++||...       +||.+- 
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            568999999999999999999999999999999999999999999999999999999999999732       122221 


Q ss_pred             hhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhc-cccccccccccccCCCCCChHHHhhhhhHHHHHHHH
Q 043156           98 ISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGT-AGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLA  176 (578)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~-g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~  176 (578)
                      ++....++..+++       .. .........++...+ +++. |...+-...-..|..|.+       -+..+++.+..
T Consensus       338 i~~~~~ai~l~~l-------~~-~~~~~~~~a~~~l~~-~~~~~g~~~~Gf~~~~~~~apq~-------a~~l~g~~~~~  401 (466)
T KOG2532|consen  338 IAFGGPAVFLLVL-------AF-TSDEHRLLAVILLTI-AIGLSGFNISGFYKNHQDIAPQH-------AGFVMGIINFV  401 (466)
T ss_pred             HHHHHHHHHHHee-------ee-cCCCcchHHHHHHHH-HHHHcccchhhhHhhhhhccchH-------HHHHHHHHHHH
Confidence            2222222222222       00 111111111121111 1222 222222223233334443       58999999999


Q ss_pred             HHHHHHHHHHHHHHhccc---cCchhHHHHHHHHHHHHHHHHHhc
Q 043156          177 VCIGGAISVTLIVWIQDN---KGWDRGFGLSSVAVFLATIIFAAG  218 (578)
Q Consensus       177 ~~lG~~~~p~l~~~l~~~---~g~~~~f~i~~~~~~~~~~~~~~~  218 (578)
                      .++.+.++|.+.+.+.++   ..|+.+|++.+++.+++.+++.++
T Consensus       402 ~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  402 GALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            999999999999999843   369999999999888877665544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.76  E-value=7.4e-08  Score=101.56  Aligned_cols=144  Identities=12%  Similarity=0.026  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccc
Q 043156           43 IALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIE  122 (578)
Q Consensus        43 ~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (578)
                      .....+.+.|+++++|++..+.+.+.+...++..++.++.|+++||+ |||+++.+++++..++.++.          ..
T Consensus       220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~----------~~  288 (392)
T PRK10473        220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITL----------AL  288 (392)
T ss_pred             HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH----------HH
Confidence            33445567788889999999999999999999999999999999998 99999998887776554432          11


Q ss_pred             cchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHH
Q 043156          123 GSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFG  202 (578)
Q Consensus       123 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~  202 (578)
                      ..+....+....+.+.|.+...+.  ....+..|.++      |+.   .......++..+++.+++++.+..|+.....
T Consensus       289 ~~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~------~~g---~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~  357 (392)
T PRK10473        289 SPSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSL------RAG---VASSTLGIAQVCGSSLWIWLAAVLGISAWNM  357 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcc------ccc---HHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence            122222233333333333332222  22233444433      432   2223344555566666666666666655444


Q ss_pred             HHHHHH
Q 043156          203 LSSVAV  208 (578)
Q Consensus       203 i~~~~~  208 (578)
                      +.+...
T Consensus       358 ~~~~~~  363 (392)
T PRK10473        358 LIGILI  363 (392)
T ss_pred             HHHHHH
Confidence            444433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1.6e-08  Score=109.40  Aligned_cols=176  Identities=20%  Similarity=0.161  Sum_probs=147.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhh--hhhhhhhhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFK--AVLISGSVE  103 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~--~~~~~~~~~  103 (578)
                      +..+.+.+...+..++++.-..+++.|.. ..|.+..++..++++..+...++.++.|+++|+. ..++  +..+++++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            67788888889999999988899999987 8999999999999999999999999999999997 6333  444444444


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      .+..+..          ....++..++..-++.|+..|......+..+.|..+.++      -..++|+......++..+
T Consensus       376 gl~~~~~----------p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~~gi~~l~  439 (509)
T KOG2504|consen  376 GLARLFL----------PFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLFQGIGALV  439 (509)
T ss_pred             HHHHHHH----------HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHHhHHHHHc
Confidence            4333222          445677888888889999999988888889999999886      899999999999999999


Q ss_pred             HHHHHHHhccccC-chhHHHHHHHHHHHHHHHHHhcC
Q 043156          184 SVTLIVWIQDNKG-WDRGFGLSSVAVFLATIIFAAGL  219 (578)
Q Consensus       184 ~p~l~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~  219 (578)
                      ||.++|++.+..+ |...|+.+++..+++.+.++...
T Consensus       440 gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  440 GPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             CcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999998877 99999999998888776665544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.75  E-value=1.7e-07  Score=82.44  Aligned_cols=135  Identities=19%  Similarity=0.205  Sum_probs=103.4

Q ss_pred             cCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCcc
Q 043156          366 PILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLP  445 (578)
Q Consensus       366 ~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (578)
                      .....+..++..++.+++.||+++|           +.+..+..+..++.+......                       
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~~-----------------------   49 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRK-----------PVLLVGLFIFVLSTAMFALSS-----------------------   49 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchh-----------HHHHHHHHHHHHHHHHHHHhc-----------------------
Confidence            3445677888899999999888777           355666666666665554422                       


Q ss_pred             chhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCC
Q 043156          446 ISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNN  525 (578)
Q Consensus       446 ~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~  525 (578)
                       +.+.+....++.+++.+...+..+.++.+.+|++.|+++.++.+....++..+++.+.+.+.+                
T Consensus        50 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------  112 (141)
T TIGR00880        50 -NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ----------------  112 (141)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------------
Confidence             455566677888999998899999999999999999999999999999999999998887652                


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHhhhc
Q 043156          526 INRNHLNLFFWLLSALSFINFSVYLFMS  553 (578)
Q Consensus       526 ~~~~~~~~~f~~~~~~~~i~~i~~~~~~  553 (578)
                        ..+++..|+..+++.+++.+..+++.
T Consensus       113 --~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (141)
T TIGR00880       113 --FLGWRAPFLFLAILALAAFILLAFLL  138 (141)
T ss_pred             --ccchHHHHHHHHHHHHHHHHHHhhcC
Confidence              12345678887877777776666554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.74  E-value=1.5e-07  Score=99.53  Aligned_cols=158  Identities=9%  Similarity=-0.106  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCc
Q 043156           39 NLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGC  118 (578)
Q Consensus        39 ~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  118 (578)
                      ..........++.|+++.+|.+..+.|.+.+...++..++.++.|++.||. ++|+++..+... .+..++.        
T Consensus       218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~--------  287 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLM--------  287 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHH--------
Confidence            333444445567788889999999999999999999999999999999997 999888777533 2111111        


Q ss_pred             cccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCch
Q 043156          119 KKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWD  198 (578)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~  198 (578)
                        ....+.+...+..++.|++.+...+...+.+.+..|++.     .++++.++.+...++|..++..+.+.+ +.+|-+
T Consensus       288 --~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~  359 (393)
T PRK11195        288 --ALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVP  359 (393)
T ss_pred             --HHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCC
Confidence              223445555566777889988888878888877644432     269999999999999999999888866 456767


Q ss_pred             hHHHHHHHHHHHHHHH
Q 043156          199 RGFGLSSVAVFLATII  214 (578)
Q Consensus       199 ~~f~i~~~~~~~~~~~  214 (578)
                      ..+.+.++..+.++..
T Consensus       360 ~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        360 VVAVIVGFGLLVALAM  375 (393)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666655554444433

>TIGR00898 2A0119 cation transport protein

Probab=98.72  E-value=3.2e-08  Score=108.06  Aligned_cols=143  Identities=15%  Similarity=-0.021  Sum_probs=99.0

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHH
Q 043156           55 GVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALY  134 (578)
Q Consensus        55 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (578)
                      +.++.+..   .......+....+.+++++++||+ |||+++.++.++..++.++..        ..........++..+
T Consensus       351 ~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~  418 (505)
T TIGR00898       351 GNLGGNIY---LDLFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLL--------FVPVDLYFLRTALAV  418 (505)
T ss_pred             cccCCChH---HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHH--------HcCCCchHHHHHHHH
Confidence            44555533   333344566778888999999998 999999988877665433320        011112233344445


Q ss_pred             HHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHH
Q 043156          135 LIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       135 l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~  214 (578)
                      +.+++.+...+..+.+.+|.+|++.      |++++++.+....+|++++|.+.+ +.+ .++..++++.++..+++.+.
T Consensus       419 ~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~~~~~~~~~~~~~~  490 (505)
T TIGR00898       419 LGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPLVLFGGLALLAGIL  490 (505)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHHHHHHHHHHHHHHH
Confidence            5566666667778899999999886      999999999999999999999998 443 46677777777666665554


Q ss_pred             HHh
Q 043156          215 FAA  217 (578)
Q Consensus       215 ~~~  217 (578)
                      .++
T Consensus       491 ~~~  493 (505)
T TIGR00898       491 TLF  493 (505)
T ss_pred             HHc
Confidence            444

>TIGR00901 2A0125 AmpG-related permease

Probab=98.72  E-value=4e-08  Score=102.12  Aligned_cols=138  Identities=17%  Similarity=0.106  Sum_probs=108.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYM-GTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      ..+.+.+..++....++...++.+.|+++ +|++.++.+.+.+... ++..++.+++|+++||+ ||||.+.++.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            46666666777788888888999999986 9999999998888766 57889999999999998 999998888877664


Q ss_pred             CCcccccCCCCCcccccc-------chhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEG-------SDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVC  178 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~  178 (578)
                      +..+..      ......       .+...+....++.+++.+...+...+++.|.+|+++      |++.+++++...|
T Consensus       288 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~  355 (356)
T TIGR00901       288 TNAGFV------WLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSLSA  355 (356)
T ss_pred             HHHHHH------HHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHh
Confidence            433210      000001       234556677778899999999999999999999998      9999999887765

>PRK09848 glucuronide transporter; Provisional

Probab=98.70  E-value=3.4e-08  Score=106.24  Aligned_cols=163  Identities=13%  Similarity=0.086  Sum_probs=118.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |..+...+..++....++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..+
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            3455556666666666666666677788888898776666555555667888999999999998 999999999887775


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHH-HhhhhhHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIE-ARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~-~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      +.++..        .....+.+.+++..++.++|.+...+...++.+|..|.++-+- +++++..++.+++...+|..+|
T Consensus       307 ~~~~~~--------~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig  378 (448)
T PRK09848        307 GYLLFF--------WVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIG  378 (448)
T ss_pred             HHHHHH--------HcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHH
Confidence            543320        1112345556677788899999999999999999887653100 0125888889999999999999


Q ss_pred             HHHHHHhccccCc
Q 043156          185 VTLIVWIQDNKGW  197 (578)
Q Consensus       185 p~l~~~l~~~~g~  197 (578)
                      +.+.+.+.+..||
T Consensus       379 ~~i~g~~l~~~G~  391 (448)
T PRK09848        379 GSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999888655555

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.68  E-value=1.1e-07  Score=94.85  Aligned_cols=171  Identities=15%  Similarity=0.051  Sum_probs=114.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC----H------------HHHHHH-HHHHHHHHHHHHhHHHHH
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVL--HLD----L------------AEAANQ-VTNYMGTSYILSIVVALL   85 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~l--g~s----~------------~~~~~~-~~~~~~~~~~~~~~~G~l   85 (578)
                      +|..+.+....|.+.++||++.-......+...  +.+    +            .+.... ..+.++..+-+.++.|++
T Consensus       325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i  404 (528)
T KOG0253|consen  325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI  404 (528)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence            455677778888999999998765544444321  000    1            111112 223466778889999999


Q ss_pred             hhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhh
Q 043156           86 ADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQ  165 (578)
Q Consensus        86 aD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~  165 (578)
                      .||+ ||||++..+++++.+.++++     ..|...+.. ..+++.+|+....    .+.+.+.|..|.+|+..      
T Consensus       405 verl-GRKkTMal~l~~f~iflfll-----~~c~~rn~~-tvllf~arafisg----~fqvaYvYtPEVyPTav------  467 (528)
T KOG0253|consen  405 VERL-GRKKTMALSLILFGIFLFLL-----TTCKTRNAY-TVLLFTARAFISG----AFQVAYVYTPEVYPTAV------  467 (528)
T ss_pred             HHHh-cchhHHHHHHHHHHHHHHHH-----HHhcCcchh-HHHHHHHHHHHhc----hheEEEEecCcccchhh------
Confidence            9997 99999999999988665543     112222222 2356677777653    34567899999999997      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHH
Q 043156          166 MSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       166 R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~  214 (578)
                      |+.+.|....+..+|+++.|.++....  -+-..+..+.+.+.+++.+.
T Consensus       468 RatgvGtcSsmaRIggI~~p~iA~~~e--~s~sl~i~vy~~~~ilagIa  514 (528)
T KOG0253|consen  468 RATGVGTCSSMARIGGIFSPVIAMRAE--LSTSLPIFVYGALFILAGIA  514 (528)
T ss_pred             hhcchhhhhhHHhhhhhhhhHHHHHhc--cceeehHHHHHHHHHHHHHH
Confidence            999999999999999999999983222  23333444555555544443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.64  E-value=4.3e-07  Score=91.04  Aligned_cols=172  Identities=15%  Similarity=0.087  Sum_probs=129.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      +..|.+.+-.-+.+..||.++.++|.++. +.|+|..++|++.+..++......+..-.+++|.-.+|+........+.+
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~  286 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV  286 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            44677777777899999999999999986 66999999999999999999999999999999875667777776666665


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      |..-+       + ..-...+. +.  .+++|+|.|...|....++.+..+..+     +-++..++.+-...+=+.+||
T Consensus       287 G~~G~-------~-~~P~~~~~-lw--~~llG~G~G~~F~laL~li~~rs~~a~-----~Aa~LSgmaQg~GYllAa~GP  350 (395)
T COG2807         287 GLVGL-------L-LAPGQLPI-LW--ALLLGLGQGGAFPLALTLILLRSSDAA-----IAAALSGMAQGVGYLLAAFGP  350 (395)
T ss_pred             HHHHH-------H-HhhhhHHH-HH--HHHHhCccchHHHHHHHHHHhhcCChH-----HHHHHHHHhhhhhHHHHhhhh
Confidence            53332       1 11112222 22  478899999999999999999887654     256666676666666688999


Q ss_pred             HHHHHhccccC-chhHHHHHHHHHHHHHHH
Q 043156          186 TLIVWIQDNKG-WDRGFGLSSVAVFLATII  214 (578)
Q Consensus       186 ~l~~~l~~~~g-~~~~f~i~~~~~~~~~~~  214 (578)
                      .+.|++.|..| |+.++...+...+...++
T Consensus       351 ~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~  380 (395)
T COG2807         351 WLFGFLHDATGSWSAPLVLLALATLLMLIF  380 (395)
T ss_pred             hhHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            99999988764 998887766655444433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.61  E-value=1.3e-07  Score=102.54  Aligned_cols=165  Identities=17%  Similarity=0.060  Sum_probs=114.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |..+.+++..++.....+....+.+.|++..++ +....+.+.+...++..++.++.++++||+ |||+++.++.++..+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            666667777777777666665665544443444 566667777777788899999999999998 999999888766553


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHH-HhhhhhHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIE-ARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~-~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      +.+...+     .......+...+++.-++.+++.+...+...++++|..+..+-+- +++.+..++...+...+|..++
T Consensus       309 ~~~~~~~-----~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~  383 (473)
T PRK10429        309 SCGVLLL-----MGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFA  383 (473)
T ss_pred             HHHHHHH-----HhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHH
Confidence            3322100     000112345556666677888999888888999999977432100 0113447788889999999999


Q ss_pred             HHHHHHhccccCc
Q 043156          185 VTLIVWIQDNKGW  197 (578)
Q Consensus       185 p~l~~~l~~~~g~  197 (578)
                      +.+.|++.+..||
T Consensus       384 ~~i~g~~l~~~Gy  396 (473)
T PRK10429        384 AFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999998776666

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.59  E-value=2.3e-07  Score=98.48  Aligned_cols=190  Identities=17%  Similarity=0.017  Sum_probs=128.4

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhh
Q 043156           23 GGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV  102 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~  102 (578)
                      ++++..++.+...+...++-.-...+-...+-++-|++..++.+++........+..+++.++.||+ |||+.++++..+
T Consensus       266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~  344 (485)
T KOG0569|consen  266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSL  344 (485)
T ss_pred             chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence            3455566666666666665444444445566678899999999999999999999999999999998 999999999888


Q ss_pred             hccCCcccccCCCCCccccccch-h-HHHHHHHHHHHHhcc-ccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEGSD-A-ALLFVALYLIATGTA-GIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI  179 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~g~g~g-~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l  179 (578)
                      +.+..+++..   .......... . ...+++.++..+..+ +..|...-+.+|.+|++.      |..++++.+....+
T Consensus       345 ~~~~~~~~~~---~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s~~~~~~w~  415 (485)
T KOG0569|consen  345 MAVALLLMSI---ALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQSVATAVNWL  415 (485)
T ss_pred             HHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHHHHHHHHHH
Confidence            8755443310   0000000101 1 122344444444444 346778899999999997      99999987777777


Q ss_pred             HHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCce
Q 043156          180 GGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYR  223 (578)
Q Consensus       180 G~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~  223 (578)
                      ...+-...-..+.+..|- +.|.+..+...+..+..+...|+.+
T Consensus       416 ~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  416 SNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            776666666777776664 5666666666666655555555433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.59  E-value=7.1e-07  Score=93.38  Aligned_cols=149  Identities=11%  Similarity=0.036  Sum_probs=99.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      ..+..++..++.....+....+.+.++.+++|++..+.+.+.+...++..++.+++|+++||+ ||||++.++..+..+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  273 (377)
T PRK11102        195 RVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIM  273 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence            344445555555556666666777788888999999999999999999999999999999998 9999998887654422


Q ss_pred             CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHH-HHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLA-VCIGGAISV  185 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~-~~lG~~~~p  185 (578)
                      .+...      .......+.+...++..+.+.+.+...+.....+.|..| ++      |++..+.++.. ..+|..+++
T Consensus       274 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~~g~~~g~  340 (377)
T PRK11102        274 GIWLV------VSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTLRFGIGAIVGA  340 (377)
T ss_pred             HHHHH------HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHHHHHHHHHHHH
Confidence            11110      000011233334444444455555555566667778777 44      78888886553 456777776


Q ss_pred             HHHH
Q 043156          186 TLIV  189 (578)
Q Consensus       186 ~l~~  189 (578)
                      .+++
T Consensus       341 ~~~~  344 (377)
T PRK11102        341 LLSL  344 (377)
T ss_pred             HHHh
Confidence            6544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.59  E-value=1.7e-07  Score=97.52  Aligned_cols=139  Identities=11%  Similarity=0.013  Sum_probs=102.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      ..+.+.+..+.....++.+..+.+.|+++.+|++..+++.+.+...+...++.+++|+++||+ |||+.+..+......+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  304 (366)
T TIGR00886       226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG  304 (366)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence            345555556666666777788899999999999999999999999999999999999999998 9998887776555533


Q ss_pred             CcccccCCCCCccccccc--hhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGS--DAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      ..+..        .....  +.....+...+.+++.|...+...++++|.+|. +      |++.+|+.+...++|+
T Consensus       305 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       305 AFLVV--------LGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAVSGLVGAIGNLGG  366 (366)
T ss_pred             HHHHH--------hcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccHHHHHHHhccCCC
Confidence            32220        01111  444455555566666677777778888888874 3      8999999888877763

>PRK11043 putative transporter; Provisional

Probab=98.58  E-value=1e-06  Score=93.27  Aligned_cols=152  Identities=7%  Similarity=-0.079  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccC
Q 043156           34 AFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFD  113 (578)
Q Consensus        34 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~  113 (578)
                      ...+....++....+.|.|++ +.|++..+.+.......++..++.++++++.||+ |+|+++....+...+..+...+ 
T Consensus       211 ~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~-  287 (401)
T PRK11043        211 IFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWL-  287 (401)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHH-
Confidence            333444555666677777775 5899999999988888888899999999999998 9999776554444422211100 


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043156          114 PTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQD  193 (578)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~  193 (578)
                          .......+....++...+.+++.+...|...+...|..|+ +      |+++.++++.....++..++.+.+.+.+
T Consensus       288 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        288 ----ASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             ----HHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence                0001123344455556677888888888877777777764 4      8999999998888888888888888876


Q ss_pred             ccCchh
Q 043156          194 NKGWDR  199 (578)
Q Consensus       194 ~~g~~~  199 (578)
                      ......
T Consensus       357 ~~~~~~  362 (401)
T PRK11043        357 TPLLTT  362 (401)
T ss_pred             CChhHH
Confidence            443333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.57  E-value=7.6e-07  Score=93.88  Aligned_cols=173  Identities=13%  Similarity=0.004  Sum_probs=126.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPP  107 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~  107 (578)
                      +...++..+....+.-....+...|+++.-|.+....+.+.+...++-.+...+.+++-.|+ |-|++++++.+.+++=.
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            33344455566666666678888998755557888888888888888999999999999998 99999999998877332


Q ss_pred             cccccCCCCCcccccc-chhHH----HHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHH-HHHHH
Q 043156          108 PCNVFDPTAGCKKIEG-SDAAL----LFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLA-VCIGG  181 (578)
Q Consensus       108 ~~~~~~~~~~~~~~~~-~~~~~----~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~-~~lG~  181 (578)
                      .+.          +.. ++.+.    ...+..+.|+..|....+...++.+..|++.      |+++-+++... ..+|.
T Consensus       288 ~l~----------a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~  351 (400)
T PF03825_consen  288 LLY----------AYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGG  351 (400)
T ss_pred             HHH----------HHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHH
Confidence            221          111 22222    2333456899999999999999999999987      99999998775 57999


Q ss_pred             HHHHHHHHHhccccCch------hHHHHHHHHHHHHHHHHHh
Q 043156          182 AISVTLIVWIQDNKGWD------RGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g~~------~~f~i~~~~~~~~~~~~~~  217 (578)
                      .+|..++|++.+++|-+      ..|.+.+...++..+.++.
T Consensus       352 ~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  352 AIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999877644      4455555554444444443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=3.5e-05  Score=81.31  Aligned_cols=103  Identities=10%  Similarity=0.037  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhcccccccc
Q 043156           68 VTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAAL  147 (578)
Q Consensus        68 ~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~  147 (578)
                      .++......+..++++.+.|++ |.|..+.++...+..--+-        +   ...|-.-++..-.+.|+|.+..+...
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~g--------f---l~~N~y~~yfssallG~Gaallw~Gq  123 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLG--------F---LFPNSYYLYFSSALLGFGAALLWTGQ  123 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHH--------H---HhcchHHHHHHHHHhhhhHHheeccc
Confidence            6667777888999999999997 9999999999887711111        0   12445667888899999999999999


Q ss_pred             ccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043156          148 PPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLI  188 (578)
Q Consensus       148 ~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~  188 (578)
                      -.+++|..+++.      +++-.++.-...+.+.++|..+.
T Consensus       124 G~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  124 GGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             ceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhh
Confidence            999999888776      77777776666666666664443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.51  E-value=1.3e-06  Score=92.83  Aligned_cols=140  Identities=10%  Similarity=0.001  Sum_probs=108.4

Q ss_pred             cccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCC
Q 043156          364 SLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQP  443 (578)
Q Consensus       364 ~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (578)
                      ...+...+...+..++.+.+.||++||           +.+..+.++.+++.+......                     
T Consensus        55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr-----------~~l~~~~~~~~~~~~~~~~a~---------------------  102 (413)
T PRK15403         55 ASVSLYLAGGMALQWLLGPLSDRIGRR-----------PVLITGALIFTLACAATLFTT---------------------  102 (413)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHcC---------------------
Confidence            344555677788889999999999888           466777777777776665532                     


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCC
Q 043156          444 LPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAG  523 (578)
Q Consensus       444 ~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~  523 (578)
                         +.++++..-++.|++++...+....++.+..|++.+++.+++.+....++..+|+.+.+.+.+              
T Consensus       103 ---~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~--------------  165 (413)
T PRK15403        103 ---SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH--------------  165 (413)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence               666777778889999887777777788889999999999999999999999999988877651              


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 043156          524 NNINRNHLNLFFWLLSALSFINFSVYLFMSSRY  556 (578)
Q Consensus       524 ~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~  556 (578)
                          ..+|++.|+..+++.++..+..++..++.
T Consensus       166 ----~~gw~~~f~~~~~~~~i~~~~~~~~lp~~  194 (413)
T PRK15403        166 ----FVHWKVLFAIIAVMGLIAFVGLLLAMPET  194 (413)
T ss_pred             ----hcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence                12467889998888888776655545543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.50  E-value=1.1e-06  Score=92.73  Aligned_cols=138  Identities=10%  Similarity=-0.060  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccch
Q 043156           46 GVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSD  125 (578)
Q Consensus        46 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (578)
                      ....+.|+++.+|.+..+.+++......+..++.++.+++.||+ ||+....+...+.....+..       .......+
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  298 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQSVICCLLAGLLMWI-------PGWFGVMN  298 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-------HHHhcccc
Confidence            44566788888999999999998888888889999999999997 74443332222111110000       00011234


Q ss_pred             hHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCch
Q 043156          126 AALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWD  198 (578)
Q Consensus       126 ~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~  198 (578)
                      .+.+..+..+.++|.+...|...+...|.+|+ +      +++..++.+...++|..+++.+++++.+...+.
T Consensus       299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~  364 (394)
T PRK11652        299 VWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLSAMLPQTGQFS  364 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence            45566777888999999899999988898874 3      799999999999999999999999887654333

>PRK09669 putative symporter YagG; Provisional

Probab=98.49  E-value=3.4e-07  Score=98.42  Aligned_cols=160  Identities=16%  Similarity=0.063  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNG-VLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      .+.++...++.......... ...|+.+ .++ +....+.+.....+...++.++.++++||+ |||+.+.++.++..+.
T Consensus       231 ~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~  307 (444)
T PRK09669        231 WRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVIL  307 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-hhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence            44444444444444433233 3344433 333 333445556666777888899999999998 9999998877655532


Q ss_pred             CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHH-hhhhhHHHHHHHHHHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEA-RQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~-~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      .+..       .. ....+...+++..++.+++.+...+...++++|..+.++-+.. ++.+..++.+.+..++|..+|+
T Consensus       308 ~~~~-------~~-~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~  379 (444)
T PRK09669        308 SALI-------FF-IPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGG  379 (444)
T ss_pred             HHHH-------HH-hCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHH
Confidence            2111       00 1134555667777889999999999999999999874431100 1235567888999999999999


Q ss_pred             HHHHHhccccCch
Q 043156          186 TLIVWIQDNKGWD  198 (578)
Q Consensus       186 ~l~~~l~~~~g~~  198 (578)
                      .++|++.+..||+
T Consensus       380 ~i~g~ll~~~Gy~  392 (444)
T PRK09669        380 AVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999987766663

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=2.7e-07  Score=93.28  Aligned_cols=149  Identities=15%  Similarity=0.136  Sum_probs=129.8

Q ss_pred             eeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCC
Q 043156          359 HIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAI  438 (578)
Q Consensus       359 ~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (578)
                      +...+++.+...+..++..|+.+.+.||++.|           ..+.+|++++..+.++.++.+                
T Consensus       105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~-----------ipm~~Gl~vmf~sTilFafg~----------------  157 (464)
T KOG3764|consen  105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYK-----------IPMVAGLFVMFLSTILFAFGN----------------  157 (464)
T ss_pred             ccchhHHHHHHHHHHHHhcccchhhHHHhccc-----------cHHHHHHHHHHHHHHHHHHcc----------------
Confidence            44567888888999999999999999999988           478999999999999999966                


Q ss_pred             CCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchh-hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCC
Q 043156          439 PVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGI-KSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQS  517 (578)
Q Consensus       439 ~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~-rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~  517 (578)
                              +.+.++++=.++|+|.........+++.+.+|++. ||+++|+......+|..+||.+.|++.+.       
T Consensus       158 --------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~-------  222 (464)
T KOG3764|consen  158 --------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF-------  222 (464)
T ss_pred             --------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh-------
Confidence                    66678888999999999999999999999999987 59999999999999999999999988732       


Q ss_pred             CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 043156          518 GGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRP  560 (578)
Q Consensus       518 ~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~  560 (578)
                                 .+++.-|.++++++++-...-+++.+.++.++
T Consensus       223 -----------~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  223 -----------AGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             -----------cCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence                       23335599999999999998888888776555

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.47  E-value=1.1e-06  Score=93.31  Aligned_cols=163  Identities=16%  Similarity=0.045  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVL-HLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~l-g~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      .+..++..++......+..++++.|+.+.. +.+....+...+.+..+..++.+++|+++||+ ++||++.++.++..+.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            333444555555555567788899986532 55555666677777788999999999999998 9999988887776644


Q ss_pred             CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVT  186 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~  186 (578)
                      .++.          ....+.. ......+.++..+..+|...++..+..+++.       ..+.+....+ .+|+++.|.
T Consensus       313 ~ll~----------~~~~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s~~l~~~-~~Gga~~p~  373 (410)
T TIGR00885       313 CLGS----------IFAGGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGAAGLVMA-IIGGGIVPP  373 (410)
T ss_pred             HHHH----------HHcCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHHHHH-HhccchHHH
Confidence            3332          1112222 2455666778888888999999999998653       2333333333 399999999


Q ss_pred             HHHHhcccc------CchhHHHHHHHHHHH
Q 043156          187 LIVWIQDNK------GWDRGFGLSSVAVFL  210 (578)
Q Consensus       187 l~~~l~~~~------g~~~~f~i~~~~~~~  210 (578)
                      +.|++.|..      +.+..|++..++.+.
T Consensus       374 l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       374 LQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            999999853      478888886665443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.42  E-value=7e-07  Score=93.02  Aligned_cols=178  Identities=13%  Similarity=0.096  Sum_probs=135.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLH---LDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      .|..|.+.+........|+..-...+.|.+..++   .+....|.+.+.-.+.-.+...+..++-+|+ |.|+.++++.+
T Consensus       219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~  297 (412)
T PF01306_consen  219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV  297 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence            3566666655555556666665667788775443   3445678888888888999999999999998 99999999988


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHH-HHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNL-LFLAVCIG  180 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~-~~~~~~lG  180 (578)
                      +.++=....          +..++++.+.+...+-++-.+....+...++++.+|++.      .++.+.+ ++.+..+|
T Consensus       298 i~~iRi~~~----------~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~~~~~~~~~  361 (412)
T PF01306_consen  298 IMAIRIIGS----------GFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVGFQFAKQIG  361 (412)
T ss_dssp             HHHHHHHHH----------HT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHHH----------hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHH
Confidence            877332221          446788889999999999999999999999999999875      6778877 46788999


Q ss_pred             HHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcC
Q 043156          181 GAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGL  219 (578)
Q Consensus       181 ~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~  219 (578)
                      ..+.+.++|++.|+.|++..|++.+.+.+...++..+..
T Consensus       362 ~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l  400 (412)
T PF01306_consen  362 IIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL  400 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence            999999999999999999999888877666555544443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.42  E-value=5.9e-06  Score=88.60  Aligned_cols=213  Identities=12%  Similarity=0.073  Sum_probs=132.5

Q ss_pred             HHHHhHHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCC
Q 043156          317 KIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPT  396 (578)
Q Consensus       317 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~  396 (578)
                      +++++....++.....|.+...+.+.+.+. .+.+.       ...+.+....++..++..|+.+.+.||...|.+|++ 
T Consensus         4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~-------~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr-   74 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPH-------AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR-   74 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH-------HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH-
Confidence            444555555555555566555554444332 22222       123456677789999999999999997544544332 


Q ss_pred             CCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeecc
Q 043156          397 GITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSE  476 (578)
Q Consensus       397 ~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~  476 (578)
                           ..+..|.+...++++++++.........++.       .+.......+..+..+.+..++....+++..+++.|.
T Consensus        75 -----p~il~g~~~~~~~l~ll~~~~~~~~~~~~~~-------~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl  142 (477)
T TIGR01301        75 -----PFIAAGAALVAFAVILIGFAADIGHLFGDNL-------DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADL  142 (477)
T ss_pred             -----HHHHHHHHHHHHHHHHHHhCchhhhhccccc-------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                 2344467777777776666432110000000       0001122224445555566778888888899999999


Q ss_pred             CCchhh--HHHHHHHHHHHHHHHHHHHHHHHhhh-----ccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 043156          477 APKGIK--SLSTCFLWCSMALGYFFSTILVNIVN-----SATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVY  549 (578)
Q Consensus       477 ~P~~~r--g~~~g~~~~~~~ig~~lg~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  549 (578)
                      +|++.|  +.+.+..+...++|+.+|+.+.++..     ..+..  ...+..      ..+++..|++.+++.+++.++.
T Consensus       143 ~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~--~~~~~~------~~~~~~~F~i~a~~l~i~~l~t  214 (477)
T TIGR01301       143 TGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKT--EACGVS------CANLKSCFLIDIILLAILTYIA  214 (477)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccc--cccccc------cchHHHHHHHHHHHHHHHHHHH
Confidence            999876  67999999999999999998877642     11100  001111      1478889999999999999999


Q ss_pred             hhhcccccc
Q 043156          550 LFMSSRYNY  558 (578)
Q Consensus       550 ~~~~~~~~~  558 (578)
                      ++..++...
T Consensus       215 ~~~v~E~~~  223 (477)
T TIGR01301       215 LSAVKENPL  223 (477)
T ss_pred             eeeeeccCC
Confidence            998887653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.31  E-value=4e-06  Score=91.06  Aligned_cols=136  Identities=10%  Similarity=0.053  Sum_probs=101.1

Q ss_pred             ccCchhHHHHHHHHhhhhhhcc-ccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCC
Q 043156          365 LPILPILFMILAVPVYDRIFVP-FAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQP  443 (578)
Q Consensus       365 ~~~~~~i~~il~~~l~~~l~~~-l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (578)
                      +.........+..++.+++.|| +++|           +.+.+|.+++.++.+.+++..                     
T Consensus        55 i~~~~~~~~~~~~~~~G~laDr~~G~r-----------~~~~~g~~~~~~g~~~~~~~~---------------------  102 (489)
T PRK10207         55 TFGAFAALVYGLISIGGYVGDHLLGTK-----------RTIVLGAIVLAIGYFMTGMSL---------------------  102 (489)
T ss_pred             HHHHHHHHHHHHHhhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHHhc---------------------
Confidence            3334445566667789999998 7887           578889999999988877643                     


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCch--hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCc
Q 043156          444 LPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKG--IKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWL  521 (578)
Q Consensus       444 ~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~  521 (578)
                       . ....+....++.++|.++..|...+++.+.+|++  .|+.+.+.+.+..++|..+|+.+.+.+.+            
T Consensus       103 -~-~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~------------  168 (489)
T PRK10207        103 -L-KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD------------  168 (489)
T ss_pred             -c-chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH------------
Confidence             1 1122335677889999999999999999999887  45889999999999999999999998862            


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 043156          522 AGNNINRNHLNLFFWLLSALSFINFSVYLFM  552 (578)
Q Consensus       522 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  552 (578)
                         +   .+|++.|++.++..+++++.++..
T Consensus       169 ---~---~gw~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        169 ---K---FGYSVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             ---h---hChHHHHHHHHHHHHHHHHHHHHc
Confidence               1   246678888666555555555544

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.27  E-value=6.6e-05  Score=79.10  Aligned_cols=142  Identities=11%  Similarity=0.134  Sum_probs=100.2

Q ss_pred             CcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCC
Q 043156          363 ASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQ  442 (578)
Q Consensus       363 ~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (578)
                      +.....+-..=+++-++..+++.++++-           +.+..|+.+..+=++.....+                    
T Consensus       409 Gv~~a~~~~gEI~~~ffs~klI~kiGHv-----------~v~~lgLa~~~~Rf~~~S~L~--------------------  457 (618)
T KOG3762|consen  409 GVVSALCHAGEILFYFFSFKLIEKIGHV-----------NVMYLGLACNVGRFLYYSYLQ--------------------  457 (618)
T ss_pred             eehhhhhccchHHHHHHHHHHHHHhccc-----------ceeeehhhHHHHHHHHHHHhc--------------------
Confidence            3444555555566667777777666554           456677777777777777765                    


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHH-HHHHHHHHHHHHHhhhccccCccCCCCCc
Q 043156          443 PLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCS-MALGYFFSTILVNIVNSATRGITQSGGWL  521 (578)
Q Consensus       443 ~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~-~~ig~~lg~~~~~~~~~~~~~~~~~~~~~  521 (578)
                          ++|..++.=++.|+...+.+.+..+|+...+|++.|.+++|+.... -.+|-.+|+.+.|.+...           
T Consensus       458 ----n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~-----------  522 (618)
T KOG3762|consen  458 ----NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER-----------  522 (618)
T ss_pred             ----CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee-----------
Confidence                7777777779999999999999999999999999999999987644 345555666665554421           


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 043156          522 AGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYN  557 (578)
Q Consensus       522 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~  557 (578)
                             -+-+..|+.+++.+++.++.+..+.+..+
T Consensus       523 -------fg~~ttf~~~giAcl~~l~~~~~iq~~l~  551 (618)
T KOG3762|consen  523 -------FGARTTFRIFGIACLVTLALFISIQLLLK  551 (618)
T ss_pred             -------ehhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence                   12235688888888887777766654443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.27  E-value=6.3e-06  Score=84.69  Aligned_cols=169  Identities=14%  Similarity=0.125  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccC
Q 043156           34 AFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFD  113 (578)
Q Consensus        34 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~  113 (578)
                      --+...+++++--..+-+|--+.+|++..+...++.....+..++....|++..|-.+++++..+++.+..++..+.+  
T Consensus       216 fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii--  293 (403)
T PF03209_consen  216 FLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII--  293 (403)
T ss_pred             HHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH--
Confidence            344556677777788889999999999999999999999999999999999988555999988888888776654431  


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043156          114 PTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQD  193 (578)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~  193 (578)
                           ..+...+.+.+..+.+++|++.|.+.....+.+-|..++++      -+..+|.+..+..++..+|-.++|.+.|
T Consensus       294 -----~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  294 -----LAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             -----HHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 11333567788999999999999999888888999998776      6999999999999999999988887743


Q ss_pred             ----------ccCchhHHHHHHHHHHHHHHHH
Q 043156          194 ----------NKGWDRGFGLSSVAVFLATIIF  215 (578)
Q Consensus       194 ----------~~g~~~~f~i~~~~~~~~~~~~  215 (578)
                                ..+|-.+|.+-++..++++.+.
T Consensus       363 ~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  363 LVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence                      1347778887777766665544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.27  E-value=7.7e-06  Score=86.25  Aligned_cols=162  Identities=20%  Similarity=0.085  Sum_probs=122.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccC
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLP  106 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~  106 (578)
                      ....+++..++...++....+...-|.+-.+|.+.....+.......+..++.++...+++|+ ||||++.++.++.+++
T Consensus       237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~  315 (467)
T COG2211         237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG  315 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence            344455566666666666666677777788898888888888888888888899999999998 9999999999998877


Q ss_pred             CcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhh-hhhHHHHHHHHHHHHHHHHH
Q 043156          107 PPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQ-MSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~-R~~~~~~~~~~~~lG~~~~p  185 (578)
                      .+...+        .-..+..++++..++.++|.+...+...++++|..+-.|-+--+| -|..++.+.+..-+|.+++.
T Consensus       316 ~~~~~f--------~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~  387 (467)
T COG2211         316 YLLLYF--------TPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG  387 (467)
T ss_pred             HHHHHh--------hcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence            655411        114567788888899999999999999999999887543211112 24455667888888999998


Q ss_pred             HHHHHhccccCc
Q 043156          186 TLIVWIQDNKGW  197 (578)
Q Consensus       186 ~l~~~l~~~~g~  197 (578)
                      .+.|++....||
T Consensus       388 ~~~g~~L~~~Gy  399 (467)
T COG2211         388 FIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHcCC
Confidence            888888665554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.26  E-value=4e-06  Score=90.87  Aligned_cols=184  Identities=10%  Similarity=0.002  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHHHHHHHhHHHH----Hhhhccchhhhh--hh
Q 043156           29 LLILAAFGFENLATIALGVNLVTYFNGVLHLDLAE----AANQVTNYMGTSYILSIVVAL----LADAFIGRFKAV--LI   98 (578)
Q Consensus        29 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~----~~~~~~~~~~~~~~~~~~~G~----laD~~~Grr~~~--~~   98 (578)
                      ..++....+....|.-..+.++.|.+++.+.+...    .+++.+...+...+..++..+    +.||-.+.+...  .+
T Consensus       275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~  354 (475)
T TIGR00924       275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTL  354 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence            33344444445555555566788877765544322    567777777777777766554    455411223322  45


Q ss_pred             hhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHH
Q 043156           99 SGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVC  178 (578)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~  178 (578)
                      |.++..++.....+.... .......+.+.+++..++.++|+....|...+++.+..|++.      |++.++++.....
T Consensus       355 G~~l~~~~~~~~~~~~~~-~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~~~g~~~l~~~  427 (475)
T TIGR00924       355 GMLFCGASFLTFAASIWF-ADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQMLGMWFLAQA  427 (475)
T ss_pred             HHHHHHHHHHHHHHHHhh-cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHH
Confidence            666655443332000000 000113578888999999999999999999999999999886      9999999999999


Q ss_pred             HHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcC
Q 043156          179 IGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGL  219 (578)
Q Consensus       179 lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~  219 (578)
                      +|..+++.+.....+..+|...|...++..++..++.+...
T Consensus       428 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       428 MGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888777767888888877776665555554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.26  E-value=6.6e-06  Score=88.59  Aligned_cols=140  Identities=9%  Similarity=0.026  Sum_probs=98.3

Q ss_pred             cccCchhHHHHHHHHhhhhhhccc-cccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCC
Q 043156          364 SLPILPILFMILAVPVYDRIFVPF-AGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQ  442 (578)
Q Consensus       364 ~~~~~~~i~~il~~~l~~~l~~~l-~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (578)
                      .+.........+..++.+++.||+ ++|           +.+.+|.+++.++.++++...                    
T Consensus        49 ~i~~~~~~~~~l~~ligG~LaDRilGrr-----------r~iliG~il~~lg~lll~~~~--------------------   97 (493)
T PRK15462         49 ELFSAYCSLVYVTPILGGFLADKVLGNR-----------MAVMLGALLMAIGHVVLGASE--------------------   97 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCcH-----------HHHHHHHHHHHHHHHHHHHhh--------------------
Confidence            344444566677777899999998 776           467788888888876554321                    


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCch--hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCC
Q 043156          443 PLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKG--IKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGW  520 (578)
Q Consensus       443 ~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~  520 (578)
                        . +...+.....+..+|.++..+...++..+.+|++  .|+++.++.....++|+.++|.+.+.+..           
T Consensus        98 --~-~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~-----------  163 (493)
T PRK15462         98 --I-HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE-----------  163 (493)
T ss_pred             --c-chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence              0 1112233344555666677777788899999986  79999999999999999999999988752           


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccc
Q 043156          521 LAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSR  555 (578)
Q Consensus       521 ~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~  555 (578)
                             ..+|++.|...++..+++++.+++..++
T Consensus       164 -------~~Gw~~~F~iaaigm~l~li~~~~~~~~  191 (493)
T PRK15462        164 -------EYSWAMGFGLAAVGMIAGLVIFLCGNRH  191 (493)
T ss_pred             -------hhChHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                   1346778888777667766666554333

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.24  E-value=1.5e-05  Score=76.52  Aligned_cols=95  Identities=19%  Similarity=0.210  Sum_probs=70.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHH
Q 043156           51 TYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLF  130 (578)
Q Consensus        51 ~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (578)
                      .|+-+++|+...++|.+...-.....+...+.|-|+|+- |||+.-+.-++.+.+.           |..-.++.+-.++
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitYiLs-----------CiTKhSpqYkVLm  128 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITYILS-----------CITKHSPQYKVLM  128 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHHHHH-----------HHhhcCCceEEEe
Confidence            456678899999999888777777888888889999997 9999776666555521           3334567778899


Q ss_pred             HHHHHHHHhccccccccc-cccccCCCC
Q 043156          131 VALYLIATGTAGIKAALP-PYGADQFDE  157 (578)
Q Consensus       131 ~~~~l~g~g~g~~~~~~~-~~v~~~~~~  157 (578)
                      ++|++.|+..+....+.- =+++|.-.+
T Consensus       129 VGR~LGGiaTsLLFSaFEsWliaEHnek  156 (454)
T KOG4332|consen  129 VGRVLGGIATSLLFSAFESWLIAEHNEK  156 (454)
T ss_pred             ehhhhhhHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999887666543 356666543

>PRK11462 putative transporter; Provisional

Probab=98.18  E-value=8.5e-06  Score=87.94  Aligned_cols=160  Identities=15%  Similarity=0.094  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPP  107 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~  107 (578)
                      ...++...++..............|.+..+| +....+.+...+.++..++.+++++++||+ |||+++..+..+..+..
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~  307 (460)
T PRK11462        230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVIS  307 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence            3333334444444433333333333333344 344456677788888999999999999998 99988765544333211


Q ss_pred             cccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhh-hhHHHHHHHHHHHHHHHHHH
Q 043156          108 PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQM-SSFFNLLFLAVCIGGAISVT  186 (578)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R-~~~~~~~~~~~~lG~~~~p~  186 (578)
                      ++.       .... ..+...+++..++.+++.+...+...++++|..+.+|-+-.+|| +..++...+...+|..+++.
T Consensus       308 ~~~-------~~~~-~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~  379 (460)
T PRK11462        308 LAM-------FFVP-MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGA  379 (460)
T ss_pred             HHH-------HHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            111       0001 12222334444556777777666667788887773321110112 33356677889999999999


Q ss_pred             HHHHhccccCc
Q 043156          187 LIVWIQDNKGW  197 (578)
Q Consensus       187 l~~~l~~~~g~  197 (578)
                      ++|++.+..||
T Consensus       380 i~g~iL~~~Gy  390 (460)
T PRK11462        380 LIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHcCC
Confidence            99888765455

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.17  E-value=1.6e-05  Score=78.91  Aligned_cols=146  Identities=21%  Similarity=0.192  Sum_probs=107.9

Q ss_pred             HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccc
Q 043156           47 VNLVTYFNGVLHLDL--AEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGS  124 (578)
Q Consensus        47 ~~l~~yl~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (578)
                      ...+.+ ..+++.+.  ...++..+.+.+...++.++.|.++||+ |||+.+..+......+.++.        ......
T Consensus        23 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~--------~~~~~~   92 (338)
T COG0477          23 PALPLL-LSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLL--------ALAPNV   92 (338)
T ss_pred             HHHHHH-HHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHH--------HhCccc
Confidence            344444 34555454  5789999999999999999999999998 99988888876533332221        001013


Q ss_pred             hhHHHHHHHHHHHHhccccccccccccccCCCC-CChHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHhccc--cCchhH
Q 043156          125 DAALLFVALYLIATGTAGIKAALPPYGADQFDE-KDPIEARQMSSFFNLLFL-AVCIGGAISVTLIVWIQDN--KGWDRG  200 (578)
Q Consensus       125 ~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~-~~~~~~~~R~~~~~~~~~-~~~lG~~~~p~l~~~l~~~--~g~~~~  200 (578)
                      ....+++.|.+.|++.+...+...+++.|.+|+ ++      |+...+.... ...+|..++|.+++.+...  .+|+..
T Consensus        93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (338)
T COG0477          93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA  166 (338)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            577888999999999999999999999999997 33      8998888777 5888889998777776653  578886


Q ss_pred             HHHHHHHH
Q 043156          201 FGLSSVAV  208 (578)
Q Consensus       201 f~i~~~~~  208 (578)
                      |.+.....
T Consensus       167 ~~~~~~~~  174 (338)
T COG0477         167 FLLAALLG  174 (338)
T ss_pred             HHHHHHHH
Confidence            66655443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.16  E-value=1.9e-05  Score=86.06  Aligned_cols=131  Identities=12%  Similarity=0.091  Sum_probs=95.5

Q ss_pred             HHHHHHhhhhhhcc-ccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHH
Q 043156          373 MILAVPVYDRIFVP-FAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWL  451 (578)
Q Consensus       373 ~il~~~l~~~l~~~-l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (578)
                      .....++.+++.|| +++|           +.+.+|.++.+++.+++++..                       .+.+.+
T Consensus        70 ~~~~~~~~G~LaDr~~G~r-----------~~~~~g~~~~~ig~~l~~~~~-----------------------~~~~~l  115 (500)
T PRK09584         70 VYGLVAIGGWLGDKVLGTK-----------RVIMLGAIVLAIGYALVAWSG-----------------------HDAGIV  115 (500)
T ss_pred             HHHHHHHHHHHHHhccchH-----------HHHHHHHHHHHHHHHHHHHhc-----------------------ccHHHH
Confidence            34445678899988 4777           467778888888877666532                       123344


Q ss_pred             HHHHHHHHHHHHHHhhhhhheeeccCCchh--hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcc
Q 043156          452 SIQFFIFGIADMFTYVGLLEFFYSEAPKGI--KSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRN  529 (578)
Q Consensus       452 i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~--rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (578)
                      ....++.+++.++..|...++..+..|++.  |+.+.+++++..++|..+++.+.+.+.+                  ..
T Consensus       116 ~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~------------------~~  177 (500)
T PRK09584        116 YMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA------------------KY  177 (500)
T ss_pred             HHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH------------------hh
Confidence            556677889998888888889999998653  4567888999999999999999988762                  12


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhccc
Q 043156          530 HLNLFFWLLSALSFINFSVYLFMSSR  555 (578)
Q Consensus       530 ~~~~~f~~~~~~~~i~~i~~~~~~~~  555 (578)
                      +|++.|...++..+++++.+++..+.
T Consensus       178 g~~~~F~i~~i~~~i~~i~~~~~~~~  203 (500)
T PRK09584        178 GWSVAFALSVVGMLITVVNFAFCQRW  203 (500)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            46788888887777777666655433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.13  E-value=3.3e-05  Score=75.46  Aligned_cols=158  Identities=14%  Similarity=0.061  Sum_probs=103.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccc-cch
Q 043156           47 VNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIE-GSD  125 (578)
Q Consensus        47 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  125 (578)
                      +.....+++.+|+|++|.+.+...-.++..++ ++.|.+.|++ |.+.++.+|.+...+|..++-    ....... ...
T Consensus        22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~----l~~~~~i~~~~   95 (250)
T PF06813_consen   22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLW----LAVSGRIPSLP   95 (250)
T ss_pred             hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHH----HHHhCccCccc
Confidence            33446789999999999999999999998875 8889999998 999999999998887654420    0011111 235


Q ss_pred             hHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCchhHHHHHH
Q 043156          126 AALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSS  205 (578)
Q Consensus       126 ~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~  205 (578)
                      .+.+.+...+.+.+.+...++......+-||. +      |+++.++.-....+++.+-..+-..+.+.-.-...+++..
T Consensus        96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~  168 (250)
T PF06813_consen   96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAV  168 (250)
T ss_pred             hHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            55666666666666666656655556678885 4      9999999777776666655444444433322233333444


Q ss_pred             HHHHHHHHHHHh
Q 043156          206 VAVFLATIIFAA  217 (578)
Q Consensus       206 ~~~~~~~~~~~~  217 (578)
                      ...+++++...+
T Consensus       169 ~~~~v~l~~~~~  180 (250)
T PF06813_consen  169 LPAVVCLVAMFF  180 (250)
T ss_pred             HHHHHHHHHhhh
Confidence            444444444433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.10  E-value=2.3e-05  Score=87.72  Aligned_cols=175  Identities=9%  Similarity=0.088  Sum_probs=117.8

Q ss_pred             CCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHH--Hhhh----------
Q 043156          362 PASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIR--KDVA----------  429 (578)
Q Consensus       362 ~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~--~~~~----------  429 (578)
                      .+++.+.+.+...+..++.+.+.+|..||           +.+.+|.++++++.++.++..-..  +...          
T Consensus        70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r~-----------~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        70 SGLINGSYEIGNLLLIIFVSYFGTKLHRP-----------IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             ceeeeehhhHHHHHHHHHHHHhhcccCcc-----------eEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            46677778888899999999998887766           568889999999998877653111  0000          


Q ss_pred             --hhcCccCC-------C----CCCCCc--cchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHH
Q 043156          430 --RDHNMLDA-------I----PVVQPL--PISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMA  494 (578)
Q Consensus       430 --~~~~~~~~-------~----~~~~~~--~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~  494 (578)
                        +..-|.+.       +    .+....  ...+..+++.-++.|+|++...+...+++.+.+|++.|+.+.|+++....
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence              00001100       0    000011  12345566778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccccC----------cc-CCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 043156          495 LGYFFSTILVNIVNSATRG----------IT-QSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSS  554 (578)
Q Consensus       495 ig~~lg~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~  554 (578)
                      +|..+|+.+.+.+.....+          .| ..+.|+       +.|+..|++.+++.++..+.++++-+
T Consensus       219 iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWi-------GaWwl~Fli~g~l~~l~~v~l~~~p~  282 (633)
T TIGR00805       219 FGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWI-------GAWWIGFLICGGVALLTSIPFFFFPK  282 (633)
T ss_pred             hhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHH-------HHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999999998877632100          00 001121       24666788888888776665554433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.09  E-value=5.5e-08  Score=104.56  Aligned_cols=182  Identities=19%  Similarity=0.087  Sum_probs=110.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |.....+....+..+..+....+...++.+..+.+..  -.......+...++.+++.++.||+ |||++++++.++.++
T Consensus       252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~  328 (451)
T PF00083_consen  252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAI  328 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc
Confidence            4455555555555454444444444555566777766  2233334456667777888999998 999999999888775


Q ss_pred             CCcccccCCCCCccccccc---hhHHHHHHHHHHHHhcc-ccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGS---DAALLFVALYLIATGTA-GIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~g~g-~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      ..+.+.   .........+   +...+ +...+...+.+ ...+....+.+|.+|++.      |+++.++.+....+++
T Consensus       329 ~~~~~~---~~~~~~~~~~~~~~~~~i-~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~~~~~i~~  398 (451)
T PF00083_consen  329 CSLILG---IIFFLGVSSSSWWSILSI-VFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSYAVGRIGG  398 (451)
T ss_pred             cccccc---cccccccccccccccccc-eeeeeccccccccccccccccccccccccc------cccccccccccccccc
Confidence            544430   0001111111   22222 22222222222 345667788999999997      9999999999999999


Q ss_pred             HHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCC
Q 043156          182 AISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLP  220 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~  220 (578)
                      .++|.+...+.+..+-...|.+.+.+.++..++.++..|
T Consensus       399 ~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lp  437 (451)
T PF00083_consen  399 FIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLP  437 (451)
T ss_pred             cccccccccccccccccccchhhHHHHHHHHhheeEEEe
Confidence            999988888877666344555555555555444444333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.05  E-value=3.1e-05  Score=61.10  Aligned_cols=68  Identities=21%  Similarity=0.150  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156           34 AFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE  103 (578)
Q Consensus        34 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~  103 (578)
                      ..++...+.-.+.++++.|++ +.|+|..++|.+.++..+...+++++.|+++||+ ||+|.++....++
T Consensus         8 ~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~   75 (77)
T PF12832_consen    8 FYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence            344444555556789999987 5999999999999999999999999999999998 9998888766544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.03  E-value=9e-05  Score=81.03  Aligned_cols=142  Identities=11%  Similarity=0.131  Sum_probs=105.2

Q ss_pred             CCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCC
Q 043156          362 PASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVV  441 (578)
Q Consensus       362 ~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (578)
                      ..++...+.+...+..|+.+++.|.++||           ..+.+|.++..+|+++.+-.+                   
T Consensus        80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----------~~~i~g~~l~vvG~Iv~atA~-------------------  129 (599)
T PF06609_consen   80 WSWFSTAWTLASAVSFPFVGRLSDLFGRR-----------YFFIIGSLLGVVGSIVCATAQ-------------------  129 (599)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHhcch-----------HHHHHHHHHHHhHHHHhhcCC-------------------
Confidence            34677778899999999999999999999           467889999999988877644                   


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCc
Q 043156          442 QPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWL  521 (578)
Q Consensus       442 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~  521 (578)
                           +...++....+.|+|.+..... ...+.|..|.+.|+.+.++.....-+...+++.+...+.             
T Consensus       130 -----~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~-------------  190 (599)
T PF06609_consen  130 -----NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA-------------  190 (599)
T ss_pred             -----cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc-------------
Confidence                 4556777888888887665543 445789999999988877766554444445555544332             


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 043156          522 AGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYN  557 (578)
Q Consensus       522 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~  557 (578)
                           ...+|+|.|++.+++..++++..+++++..+
T Consensus       191 -----~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~  221 (599)
T PF06609_consen  191 -----AHSGWRWIFYIFIIWSGIALVLIFFFYFPPP  221 (599)
T ss_pred             -----cCCCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                 1246789999999998888877777665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.01  E-value=0.00026  Score=73.63  Aligned_cols=154  Identities=15%  Similarity=0.080  Sum_probs=105.4

Q ss_pred             HHHHHHHHHh-cCCCHHHHH-HHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccc
Q 043156           47 VNLVTYFNGV-LHLDLAEAA-NQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGS  124 (578)
Q Consensus        47 ~~l~~yl~~~-lg~s~~~~~-~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (578)
                      +++..|+.++ .|++..|.. -+.-..+-.+....++...+.|.. |-|++++++.+.......++          ....
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~ll----------l~~~   92 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLL----------LFGT   92 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHH----------HHHC
Confidence            5788999987 899998875 455555667778888999999996 88999888877655443332          3346


Q ss_pred             hhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc--ccCchhHHH
Q 043156          125 DAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQD--NKGWDRGFG  202 (578)
Q Consensus       125 ~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~--~~g~~~~f~  202 (578)
                      +...+-+.-+.-|++.+. ..+.++++=...|+++      --++.++...+.-+|-.+|..++-.+..  ..+++...+
T Consensus        93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~  165 (412)
T PF01770_consen   93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNY  165 (412)
T ss_pred             cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            666666666666666554 3444555555555543      5666777888888888888877766654  334677777


Q ss_pred             HHHHHHHHHHHHHHhc
Q 043156          203 LSSVAVFLATIIFAAG  218 (578)
Q Consensus       203 i~~~~~~~~~~~~~~~  218 (578)
                      +......++++..++.
T Consensus       166 isl~~~~~a~~~~~fL  181 (412)
T PF01770_consen  166 ISLASVSLALLIALFL  181 (412)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            7776666666554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=98.01  E-value=8.4e-06  Score=88.16  Aligned_cols=147  Identities=12%  Similarity=-0.115  Sum_probs=110.4

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHH
Q 043156           53 FNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVA  132 (578)
Q Consensus        53 l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (578)
                      .++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++..++.+...+...........++...+...
T Consensus       279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~  357 (468)
T TIGR00788       279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGD  357 (468)
T ss_pred             EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeeh
Confidence            3467999999999999999999999999999999997 999999999988885543320000000000001222234455


Q ss_pred             HHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccC-----chhHHHHHHH
Q 043156          133 LYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKG-----WDRGFGLSSV  206 (578)
Q Consensus       133 ~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~~g-----~~~~f~i~~~  206 (578)
                      -++.+++.+........++.+..|+++      +++.++++....|+|..+++.+++++.++.|     ++..+.+..+
T Consensus       358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i  430 (468)
T TIGR00788       358 SIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILG  430 (468)
T ss_pred             hHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHH
Confidence            667788888888888999999999987      8999999999999999999999999988766     5555544333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PTZ00207 hypothetical protein; Provisional

Probab=97.96  E-value=0.00012  Score=80.49  Aligned_cols=133  Identities=12%  Similarity=0.112  Sum_probs=97.1

Q ss_pred             HHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHH
Q 043156          375 LAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQ  454 (578)
Q Consensus       375 l~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  454 (578)
                      .+.++.+.+.|++++|           +.+.+|.++.+++.++.++...                  .....+.+.+.+.
T Consensus        76 ~~~lp~G~L~Dr~G~R-----------~vllig~ll~~iG~ll~ala~~------------------~~i~~s~~~l~l~  126 (591)
T PTZ00207         76 YFLLPYSFIYDYLGPR-----------PIFVLSMTVFCLGTLLFALTFQ------------------EVIEGSVVRLSVY  126 (591)
T ss_pred             HHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHhc------------------ccccCcHHHHHHH
Confidence            3455678899888888           5778899999999988877530                  0112367777888


Q ss_pred             HHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHH
Q 043156          455 FFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLF  534 (578)
Q Consensus       455 ~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (578)
                      .++.|+|++...+.....+.+.+| +.||.+.|+......+|+.+.+.+...+..                   .+++.+
T Consensus       127 r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-------------------~~~~~~  186 (591)
T PTZ00207        127 NGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-------------------DNTSAY  186 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HhHHHH
Confidence            889999999888888888889887 679999999999999999865444433321                   123456


Q ss_pred             HHHHHHHHHHHHHHHhhhcccc
Q 043156          535 FWLLSALSFINFSVYLFMSSRY  556 (578)
Q Consensus       535 f~~~~~~~~i~~i~~~~~~~~~  556 (578)
                      |++.+++.++..++.+.+.+..
T Consensus       187 fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        187 FFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             HHHHHHHHHHHHHHHHhheeCC
Confidence            7777877777666666655433

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.95  E-value=0.00013  Score=77.13  Aligned_cols=110  Identities=8%  Similarity=0.064  Sum_probs=93.1

Q ss_pred             CCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCC
Q 043156          362 PASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVV  441 (578)
Q Consensus       362 ~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (578)
                      .+.+...-.....+.....+.+.||++.|           +.+.++.+..++..++.++..                   
T Consensus        64 ~G~I~s~F~ysYal~qIp~GlLaDrlG~K-----------~vL~l~~l~Wsl~t~L~~fa~-------------------  113 (511)
T TIGR00806        64 TNEIIPVLPYSHLAVLVPVFLLTDYLRYK-----------PVLVLQALSFVCVWLLLLLGT-------------------  113 (511)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            34455556677788888889999988888           467777777777777777754                   


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043156          442 QPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIV  507 (578)
Q Consensus       442 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~  507 (578)
                           +.+.+.+.-+++|++|+... +.+.++++.+|++.|+++.|.++....+|.++++.+.+.+
T Consensus       114 -----Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       114 -----SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 67788888899999999988 9999999999999999999999999999999999999874

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.90  E-value=1.1e-05  Score=84.89  Aligned_cols=172  Identities=10%  Similarity=-0.053  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCccc
Q 043156           31 ILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCN  110 (578)
Q Consensus        31 l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~  110 (578)
                      .++..++..++.-.+.+++--++ ++++-.+.--|.+......+-++.-++.+++-.++ |+-+++..++..+.+=.+..
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~  453 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYY  453 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHH
Confidence            34444455555555566665444 56676666777777777788888899999999997 99999999988877433332


Q ss_pred             ccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHH-HHHHHHHHHHHHHH
Q 043156          111 VFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFL-AVCIGGAISVTLIV  189 (578)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~-~~~lG~~~~p~l~~  189 (578)
                                ..-.|+|+.+..-+++|+..+..+.++.+++++..|++-      |+++-++... .-.+|-.+|.+++|
T Consensus       454 ----------S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG  517 (618)
T KOG3762|consen  454 ----------SYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGG  517 (618)
T ss_pred             ----------HHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhh
Confidence                      344788999999999999999999999999999999997      8888888555 45889999999999


Q ss_pred             HhccccCchhHHHHHHHHHHHHHHHHHhcCC
Q 043156          190 WIQDNKGWDRGFGLSSVAVFLATIIFAAGLP  220 (578)
Q Consensus       190 ~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~  220 (578)
                      .+.+.+|-+..|.+.++.+++.++......+
T Consensus       518 ~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~  548 (618)
T KOG3762|consen  518 FVVERFGARTTFRIFGIACLVTLALFISIQL  548 (618)
T ss_pred             hhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999899899999888877776665554443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.87  E-value=8.2e-05  Score=76.05  Aligned_cols=155  Identities=20%  Similarity=0.124  Sum_probs=112.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCC
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPP  107 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~  107 (578)
                      .+...+..|+---.--.+..+++.|+.+..|.+..++...++.+..+..++..++-++-.|+ ...|.+.+..++..+-.
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~  316 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLL  316 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence            33333344443333344567899999988999999999999999999999999999998897 88898887765444111


Q ss_pred             cccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 043156          108 PCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTL  187 (578)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l  187 (578)
                      +..          ....+. .-+...++.|+..++.+|...++..+..|++.        +.-|..-.+..+|+++-|.+
T Consensus       317 ~~~----------~l~~g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~t--------s~~s~~l~maivGGAiiP~l  377 (422)
T COG0738         317 LAV----------ALIGGV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHT--------SVGSGLLVMAIVGGAIIPPL  377 (422)
T ss_pred             HHH----------HHhcCh-HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc--------cccceeeeeheecchHHHHH
Confidence            110          122333 23445667788999999999999999999543        33333344678899999999


Q ss_pred             HHHhccccCchhHHH
Q 043156          188 IVWIQDNKGWDRGFG  202 (578)
Q Consensus       188 ~~~l~~~~g~~~~f~  202 (578)
                      .|++.|..|-...+.
T Consensus       378 ~G~i~d~~g~~~~~~  392 (422)
T COG0738         378 QGVIADMFGIQLTFL  392 (422)
T ss_pred             HHHHHHhhhhHHHHH
Confidence            999999998777766

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.86  E-value=0.0032  Score=63.86  Aligned_cols=119  Identities=9%  Similarity=0.039  Sum_probs=75.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCccCCC-CCcCCC
Q 043156          447 STFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNS-ATRGITQSG-GWLAGN  524 (578)
Q Consensus       447 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~-~~~~~~~~~-~~~~~~  524 (578)
                      .....+..+.+.+..........+++.++++|++..|++|.+.|...++|+.-=..+...+.+ .|.++-... +-+. .
T Consensus       368 ~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~C~~~t~~~~-c  446 (510)
T KOG3574|consen  368 YYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQCVLATNKVT-C  446 (510)
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceeecccccccee-e
Confidence            334555567777777777788889999999999999999999999999887655555444432 221100000 0000 0


Q ss_pred             C----------CCc---chhHHHHHHHHHHHHHHHHHHhhhccccccccccccCC
Q 043156          525 N----------INR---NHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSVGG  566 (578)
Q Consensus       525 ~----------~~~---~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~  566 (578)
                      .          +..   -..+.+|....++.+++.+.+.++.++.++.+++-.+.
T Consensus       447 ~~~~~~~~c~~l~gtc~~~~DGYyi~s~ici~ig~i~~~~~~~ki~~Lq~~p~ss  501 (510)
T KOG3574|consen  447 ITKAFPQLCLALGGTCLIARDGYYITSIICIVIGFIWFGLLKPKIKYLQKLPISS  501 (510)
T ss_pred             ecchHHHHHHHhcCEEEEEecceEEeeehhhhHHHHHHHHHHHHHHHHHhCCccc
Confidence            0          000   01233477777778888888888888887776665543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.83  E-value=1.8e-05  Score=85.06  Aligned_cols=165  Identities=13%  Similarity=0.068  Sum_probs=109.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhh----ccchhhhhhhhhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADA----FIGRFKAVLISGS  101 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Grr~~~~~~~~  101 (578)
                      ..+|...+..++....-|++..++|.|+++..|+|..+++.+...+.+++.++.+++|+++||    . .+|..+.....
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~  351 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLC  351 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Confidence            457888889999999999999999999998678999999999999999999999999999999    5 66666666655


Q ss_pred             hhc-cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHH
Q 043156          102 VEF-LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIG  180 (578)
Q Consensus       102 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG  180 (578)
                      ++. ++...+          ...........+.+....+.....++...-..+...++.     +|....+.+..+.+.+
T Consensus       352 ~~~~~g~~~l----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~~~~~~~~i~~~~s~  416 (495)
T KOG2533|consen  352 LYAIIGAISL----------LAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KALTTVSAIIDGTGSA  416 (495)
T ss_pred             HHHHHHHHHH----------HhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----HhHHHHhhhhcchhHH
Confidence            554 221221          111212222222222333334444555566666666554     4666666666666655


Q ss_pred             HHHHHHH-HHHhccccCchhHHHHHHH
Q 043156          181 GAISVTL-IVWIQDNKGWDRGFGLSSV  206 (578)
Q Consensus       181 ~~~~p~l-~~~l~~~~g~~~~f~i~~~  206 (578)
                      +.++|.+ .+.....++|...|+....
T Consensus       417 ~~~~~~~~~~~~ap~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  417 GAISGQLFRSLDAPRYGWGAVFYMLVA  443 (495)
T ss_pred             HHhhhhhcccccCcchhhhhHHHHHHH
Confidence            5555443 3444445788888854433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.81  E-value=0.00013  Score=79.93  Aligned_cols=134  Identities=15%  Similarity=0.066  Sum_probs=111.0

Q ss_pred             CcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCC
Q 043156          363 ASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQ  442 (578)
Q Consensus       363 ~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (578)
                      +++.....++..++.++.+++.|+++||           ..+.++.++..++.++.++..                    
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk-----------~~l~~~~~~~~iG~ii~~~a~--------------------  140 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRK-----------KTLLLAVVLFLIGAIIIALAP--------------------  140 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHhh--------------------
Confidence            5777788899999999999999999999           567888888888888888855                    


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcC
Q 043156          443 PLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLA  522 (578)
Q Consensus       443 ~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~  522 (578)
                          +..+++..=++.|+|.++.......++.|++|++.||...+..++...+|..++ ++.+...              
T Consensus       141 ----~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~--------------  201 (513)
T KOG0254|consen  141 ----SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGT--------------  201 (513)
T ss_pred             ----hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhh--------------
Confidence                778899999999999999999999999999999999999999999999888888 4444332              


Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHH
Q 043156          523 GNNINRNHLNLFFWLLSALSFINFSV  548 (578)
Q Consensus       523 ~~~~~~~~~~~~f~~~~~~~~i~~i~  548 (578)
                       .+.. .+|+..+.+..+.+++-.+.
T Consensus       202 -~~~~-~~Wr~~~~~~~i~~~~~~~~  225 (513)
T KOG0254|consen  202 -SKVY-AGWRIPLGLALIPAVILALG  225 (513)
T ss_pred             -ccCC-ccHHHHHHHHHHHHHHHHHH
Confidence             1111 35777787777777777777

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.80  E-value=8.8e-05  Score=76.76  Aligned_cols=160  Identities=9%  Similarity=0.077  Sum_probs=115.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchhhhhhhhhhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAF---IGRFKAVLISGSV  102 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~~~~~~~~~  102 (578)
                      +.++.+..+.+...+++-.-.+++++|++ .+|.+....+.+..+--+.+.+.+|+.|..+||.   +||||-++.....
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            77777888888888888888899999985 8899999999999999999999999999999975   4999877655433


Q ss_pred             h-ccCCcccccCC---CCCccc----cccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHH
Q 043156          103 E-FLPPPCNVFDP---TAGCKK----IEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLF  174 (578)
Q Consensus       103 ~-~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~  174 (578)
                      . +++.++..+.+   ...+..    ........++++..+.=+..-.....+-++.+|.....+     ++.++.+++.
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~-----~~~~Ans~f~  185 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA-----KKTRANSVFS  185 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh-----hhhccchhHH
Confidence            3 33333321110   000100    111345566666666666666667777899999998765     2333999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 043156          175 LAVCIGGAISVTLIVWI  191 (578)
Q Consensus       175 ~~~~lG~~~~p~l~~~l  191 (578)
                      ..+.+|+.+|..+++++
T Consensus       186 ~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  186 FFMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHHhcceeeeeccccc
Confidence            99999999998777744

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.61  E-value=0.00016  Score=73.26  Aligned_cols=112  Identities=12%  Similarity=0.141  Sum_probs=90.4

Q ss_pred             CCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCC
Q 043156          362 PASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVV  441 (578)
Q Consensus       362 ~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (578)
                      .+.+.....+...+..|+++.+.|+++||           ..+.+|.+...++.++.+...                   
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRk-----------pvll~c~~~va~s~ll~~~S~-------------------  119 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRK-----------PVLLACLIGVALSYLLWALSR-------------------  119 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCch-----------HHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            45566667788999999999999999998           466777777777776666543                   


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043156          442 QPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNS  509 (578)
Q Consensus       442 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~  509 (578)
                           ++..++.+=++.|+..+...+ .-++++|.++++.|+.+++..+.+.++|.++||.+.+++..
T Consensus       120 -----~F~afv~aR~l~Gi~kgnl~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  120 -----NFAAFVLARFLGGIFKGNLSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             -----HHHHHHHHHHhhhhccCchHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence                 554555556778887776655 45899999999999999999999999999999999998864

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.57  E-value=0.034  Score=58.98  Aligned_cols=188  Identities=8%  Similarity=-0.079  Sum_probs=103.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |..+.+...+++.++.--+.--..+.|+.+-+.-+.--....--.-.+...++.+..|...||. -|.|++..++++.-+
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~   80 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNL   80 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHH
Confidence            4456677777777777666666677787766543443344444444666778888889999998 999988887766542


Q ss_pred             CCccc--ccCCCCCccccc---cchhHHHHHHHHHHHHhcc-ccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH
Q 043156          106 PPPCN--VFDPTAGCKKIE---GSDAALLFVALYLIATGTA-GIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI  179 (578)
Q Consensus       106 ~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~l~g~g~g-~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l  179 (578)
                      +..+.  .+..........   ......+++...+.+.-.- .......+.=-||...=..++...+.+..+...=.--+
T Consensus        81 sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~  160 (432)
T PF06963_consen   81 SVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLF  160 (432)
T ss_pred             HHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHH
Confidence            21110  000000000000   1112222222222222111 11222233334443211101112366676666666677


Q ss_pred             HHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHH
Q 043156          180 GGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       180 G~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~  214 (578)
                      .-++||++.|.+....+.+....+.++..++....
T Consensus       161 ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  161 CKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            88899999999998888877776666666655543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.49  E-value=7.7e-05  Score=77.23  Aligned_cols=180  Identities=12%  Similarity=-0.028  Sum_probs=120.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH--------HHHHHHHH-HHHHHhHHHHHhhhccchhh
Q 043156           24 GIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAAN--------QVTNYMGT-SYILSIVVALLADAFIGRFK   94 (578)
Q Consensus        24 ~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~--------~~~~~~~~-~~~~~~~~G~laD~~~Grr~   94 (578)
                      |-|..+..+..+|.--+++|+...+...-+ +..|+.+.+...        ...+...+ +..+..+..++.|++ |||+
T Consensus       302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~  379 (538)
T KOG0252|consen  302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKY  379 (538)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHH
Confidence            447777788888888888888766554443 455655443332        11111111 222555667889997 9999


Q ss_pred             hhhhhhhhhccCCcccccCCCCCcccc-ccchhHHHHHHH-HHHHHhccccccccccccccCCCCCChHHHhhhhhHHHH
Q 043156           95 AVLISGSVEFLPPPCNVFDPTAGCKKI-EGSDAALLFVAL-YLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNL  172 (578)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~  172 (578)
                      +-+.+.+++++..+.+    .  +... .. +...+++.. +.+.++.-+-......+-+|.||++-      |+...|+
T Consensus       380 iq~~GF~~~~i~~~~~----~--~~y~~~~-~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv------R~t~hGI  446 (538)
T KOG0252|consen  380 IQLMGFFIMTIFFFVI----A--GPYNQLE-NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV------RSTCHGI  446 (538)
T ss_pred             HHHhhHHHHHHHHHHH----c--CCccccc-ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH------hhhhhhH
Confidence            9999998888443332    0  1111 11 222222222 22344454555566677899999987      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc-----ccCchhHHHHHHHHHHHHHHHHHhc
Q 043156          173 LFLAVCIGGAISVTLIVWIQD-----NKGWDRGFGLSSVAVFLATIIFAAG  218 (578)
Q Consensus       173 ~~~~~~lG~~~~p~l~~~l~~-----~~g~~~~f~i~~~~~~~~~~~~~~~  218 (578)
                      .-...-.|+++|.....++.+     ..+.+.+|++.+.+.+++.++.++.
T Consensus       447 sAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~  497 (538)
T KOG0252|consen  447 SAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI  497 (538)
T ss_pred             HHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence            999999999999999999988     6688999999988888877765543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.36  E-value=0.0017  Score=71.34  Aligned_cols=127  Identities=14%  Similarity=0.113  Sum_probs=101.9

Q ss_pred             cCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCcc
Q 043156          366 PILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLP  445 (578)
Q Consensus       366 ~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (578)
                      .++..++.+++..+.+.+.|+++||           ..+..++++..++-+..++..                       
T Consensus       124 ~s~~~~G~~vG~~i~g~lsD~~GRk-----------~~~~~~~~~~~i~~~~~a~a~-----------------------  169 (521)
T KOG0255|consen  124 QSLFFLGVLVGSLIFGPLSDRFGRK-----------PVLLVSLLLFIIFGILTAFAP-----------------------  169 (521)
T ss_pred             HHHHHHHHHHHHhhheehHhhcccH-----------HHHHHHHHHHHHHHHHHHHhC-----------------------
Confidence            3444566777777788888888888           466777777777776666644                       


Q ss_pred             chhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCC
Q 043156          446 ISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNN  525 (578)
Q Consensus       446 ~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~  525 (578)
                       +++..++.=++.|++........+.+..|..+++.|+.++.+ ......++.+++.....+.                 
T Consensus       170 -~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~-----------------  230 (521)
T KOG0255|consen  170 -NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT-----------------  230 (521)
T ss_pred             -cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH-----------------
Confidence             777788888999999999999999999999999999999999 8888888888888777665                 


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHH
Q 043156          526 INRNHLNLFFWLLSALSFINFSV  548 (578)
Q Consensus       526 ~~~~~~~~~f~~~~~~~~i~~i~  548 (578)
                         .+|++.++...+.+++.++.
T Consensus       231 ---~~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  231 ---RDWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHH
Confidence               25778888888888877776

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.18  E-value=0.026  Score=58.98  Aligned_cols=61  Identities=20%  Similarity=0.204  Sum_probs=48.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043156          447 STFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIV  507 (578)
Q Consensus       447 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~  507 (578)
                      +.|.+....+.-|+-.+..+......+.+..|++.|-.++|.....-++|-.++..+.-.+
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4455555566668888888888888889999999999999999999998888887765433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.12  E-value=0.1  Score=55.97  Aligned_cols=158  Identities=9%  Similarity=-0.048  Sum_probs=94.9

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHH-HhHHHHHhhhccchhhhh
Q 043156           23 GGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHL-----DLAEAANQVTNYMGTSYIL-SIVVALLADAFIGRFKAV   96 (578)
Q Consensus        23 ~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~-----s~~~~~~~~~~~~~~~~~~-~~~~G~laD~~~Grr~~~   96 (578)
                      ...|+++.+.+..++-.+.|+.+.+     +++.+..     +.+...++-+...+...+. .++-+++++|+ +|+|.+
T Consensus         4 ~E~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf   77 (472)
T TIGR00769         4 HELKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALF   77 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhH
Confidence            3456777777777777777776653     4566655     3356777777665554444 78889999998 999988


Q ss_pred             hhhhhhhccCCccc--ccCCCCCcccc----------ccc---------hhHHHHHHHHHHHHhcccccc-ccccccccC
Q 043156           97 LISGSVEFLPPPCN--VFDPTAGCKKI----------EGS---------DAALLFVALYLIATGTAGIKA-ALPPYGADQ  154 (578)
Q Consensus        97 ~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~---------~~~~~~~~~~l~g~g~g~~~~-~~~~~v~~~  154 (578)
                      -+....+..-.++.  ++-|..-....          ...         +.+...+..+...+-.....+ .-.++++|.
T Consensus        78 ~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi  157 (472)
T TIGR00769        78 YTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQI  157 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77655554111110  00000000000          000         011111111222222222222 456789999


Q ss_pred             CCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 043156          155 FDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQ  192 (578)
Q Consensus       155 ~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~  192 (578)
                      ++.+|      -.|.+++...+.|+|..+|+.+..++.
T Consensus       158 ~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       158 TTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99887      689999999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.99  E-value=0.0067  Score=64.56  Aligned_cols=164  Identities=10%  Similarity=0.039  Sum_probs=104.6

Q ss_pred             CCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCC
Q 043156          362 PASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVV  441 (578)
Q Consensus       362 ~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (578)
                      .|+..+...++..+..|+++.+-.|..+          ..+.+.+|.+++.+|-++....+..                 
T Consensus        73 fG~viaa~slg~~i~~liF~~Ws~k~~~----------~k~Pli~s~ii~~~g~llY~~l~~~-----------------  125 (488)
T KOG2325|consen   73 FGLVIAASSLGHAIFSLIFGIWSNKTGS----------VKKPLIVSFLIAIIGNLLYLALAYV-----------------  125 (488)
T ss_pred             hhHHHHHHHHHHHhcchhhcccccccCC----------cccCHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence            3455566788899999999988655442          1256889999999999888665511                 


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCc
Q 043156          442 QPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWL  521 (578)
Q Consensus       442 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~  521 (578)
                       +.. ..+++....++.|+|.+-... .=.|++...-.+.|.++++.......+|..+||.+...+....+.   +..|.
T Consensus       126 -~~~-~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~---G~~i~  199 (488)
T KOG2325|consen  126 -PNG-VKYLMLVARILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK---GFMIL  199 (488)
T ss_pred             -ccc-hHHHHHHHHHHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC---ceEEc
Confidence             111 668888999999998654332 224555544455566666666666667777777666555432211   00122


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 043156          522 AGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRP  560 (578)
Q Consensus       522 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~  560 (578)
                      +  ++.-+.|...=|+.++++++.+++.+++.++....+
T Consensus       200 ~--~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  200 P--GLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             C--cceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence            1  123344556677788888888888888877765443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.96  E-value=0.0041  Score=56.23  Aligned_cols=108  Identities=11%  Similarity=0.079  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhcccccc
Q 043156           66 NQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKA  145 (578)
Q Consensus        66 ~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~  145 (578)
                      .-+++......+..++++.+.+++ |.|+++++|.+.+.+-...           -.-++...++.+-++.|++.+..++
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~-----------~~~~~~~~l~~~s~l~G~~~a~lW~  108 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIAS-----------FFYPNSYTLYPASALLGFGAALLWT  108 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHhhhhHHhhH
Confidence            444455566677778888889997 9999999999988822111           1124567788889999999999999


Q ss_pred             ccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 043156          146 ALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWI  191 (578)
Q Consensus       146 ~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l  191 (578)
                      +...++.+..++++      |++-.+++....+.+.++|.++.-.+
T Consensus       109 aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  109 AQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999777665      88888887777777777776554433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.81  E-value=0.0011  Score=69.85  Aligned_cols=135  Identities=13%  Similarity=0.114  Sum_probs=103.3

Q ss_pred             HHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHH
Q 043156          375 LAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQ  454 (578)
Q Consensus       375 l~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  454 (578)
                      +...+.+++.||+.-++          +.+.+|.+++.+|.++++...                      ..+...+.+.
T Consensus        76 ~t~i~GG~laDr~LG~~----------~tI~lGail~~iGh~~L~~~~----------------------~~~~~gl~i~  123 (498)
T COG3104          76 LTPIIGGWLADRVLGTR----------RTIVLGAILMAIGHLVLAISS----------------------VSGPGGLYIG  123 (498)
T ss_pred             HHHHHHHHHHHHhcchh----------HHHHHHHHHHHHHHHHHhccc----------------------cccccHHHHH
Confidence            33444566666555442          567889999999998887732                      1244566777


Q ss_pred             HHHHHHHHHHHhhhhhheeeccCCchh--hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhH
Q 043156          455 FFIFGIADMFTYVGLLEFFYSEAPKGI--KSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLN  532 (578)
Q Consensus       455 ~~l~g~g~~~~~~~~~~~~~~~~P~~~--rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (578)
                      .+++++|.++.=|...++..++.|++.  |..+.++..+.-++|+++++.+.+.+..                  +.+|+
T Consensus       124 L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~------------------~~g~~  185 (498)
T COG3104         124 LALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI------------------NYGWH  185 (498)
T ss_pred             HHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH------------------hhCHH
Confidence            888889999999999999999888653  6667888889999999999999988762                  13477


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccccc
Q 043156          533 LFFWLLSALSFINFSVYLFMSSRYNYR  559 (578)
Q Consensus       533 ~~f~~~~~~~~i~~i~~~~~~~~~~~~  559 (578)
                      ..|-+.++-..++++.|+...++.+..
T Consensus       186 ~gF~~aavGm~~gl~~f~~~~r~~~~~  212 (498)
T COG3104         186 VGFGLAAVGMIIGLVIFLLGRRHVKGI  212 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchhcCC
Confidence            889999999999999999987776543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.38  E-value=0.0039  Score=66.75  Aligned_cols=150  Identities=15%  Similarity=0.148  Sum_probs=112.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHH-HHhhhccchhhhhhhhhh
Q 043156           24 GIKTSLLILAAFGFENLATIA-LGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVA-LLADAFIGRFKAVLISGS  101 (578)
Q Consensus        24 ~~r~~~~l~~~~~~~~~~~~~-~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G-~laD~~~Grr~~~~~~~~  101 (578)
                      +.|..+.+++..++....-.+ -.-.+..|+...++++..+.+...+...+...++..+.. .+.-.+ |-|+++.+|+.
T Consensus       238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~~~~~i~lGl~  316 (463)
T KOG2816|consen  238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-GEKRLISLGLL  316 (463)
T ss_pred             CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhhHHHH
Confidence            345555555544443333221 121345788889999999999999999999999999887 666665 99998888888


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      ...+..++.          +.....++.+...++.+ ..+...|+..++++.+.++++      +++.+++....-.+.+
T Consensus       317 ~~~~~~~~~----------af~~~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~  379 (463)
T KOG2816|consen  317 SEFLQLLLF----------AFATETWMMFAAGVVVA-LAGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSG  379 (463)
T ss_pred             HHHHHHHHH----------HHhccchhhhHHHHHHH-hhcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhh
Confidence            777555443          55677777777766644 446778888999999999887      9999999999999999


Q ss_pred             HHHHHHHHHh
Q 043156          182 AISVTLIVWI  191 (578)
Q Consensus       182 ~~~p~l~~~l  191 (578)
                      .++|.+-+.+
T Consensus       380 ~~~~~~~~~i  389 (463)
T KOG2816|consen  380 VVSPALYGNI  389 (463)
T ss_pred             hhhHHHHHHH
Confidence            9999887766

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.31  E-value=0.02  Score=60.00  Aligned_cols=125  Identities=13%  Similarity=0.134  Sum_probs=90.7

Q ss_pred             hhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCch-
Q 043156          402 QRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKG-  480 (578)
Q Consensus       402 ~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~-  480 (578)
                      +.+.+|.++..+|++++.....-     .          ..+...+...+.+...+.++|.++.=|....+..++.+++ 
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~-----~----------~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~   66 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIP-----P----------SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD   66 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTS-----S----------SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhc-----c----------hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence            35678899999999886664410     0          0012234567777888999999999999999999999877 


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 043156          481 --IKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNY  558 (578)
Q Consensus       481 --~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~  558 (578)
                        .|..+...+....++|+.++....+++.+                  +.+|+..|.+.++..++++++++.-.++++.
T Consensus        67 ~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~------------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~  128 (372)
T PF00854_consen   67 DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQ------------------NYGWFLGFGIPAIGMLLALIVFLSGRKRYRK  128 (372)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHH------------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT--
T ss_pred             hhhhhhhHHHHHHHHhhhhHhhcccchhhcc------------------ccchhhhhhHHHHHHHHHHHHHHhCCcCCcC
Confidence              46667778899999999999888777652                  1356778999999999999999888777766


Q ss_pred             c
Q 043156          559 R  559 (578)
Q Consensus       559 ~  559 (578)
                      .
T Consensus       129 ~  129 (372)
T PF00854_consen  129 V  129 (372)
T ss_dssp             S
T ss_pred             c
Confidence            5

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.24  E-value=0.012  Score=47.00  Aligned_cols=65  Identities=11%  Similarity=-0.013  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcc
Q 043156           43 IALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPC  109 (578)
Q Consensus        43 ~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~  109 (578)
                      |...+.+ +.++++.++|.++.+++.+...+++.++.+...++.++. .+++.+..+++...+..+.
T Consensus         9 FayTplL-P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~   73 (85)
T PF06779_consen    9 FAYTPLL-PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAA   73 (85)
T ss_pred             HHHHhHh-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHH
Confidence            3334544 477899999999999999999999999999999999996 8888888888777744433

Note that many members are hypothetical proteins.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.14  E-value=0.00098  Score=73.01  Aligned_cols=179  Identities=15%  Similarity=0.155  Sum_probs=2.9

Q ss_pred             CCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHh----hhh-----h-
Q 043156          362 PASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKD----VAR-----D-  431 (578)
Q Consensus       362 ~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~----~~~-----~-  431 (578)
                      .+.+...+-+..++...+...+    +.|.       ++++.+++|.+++++|.++.+...-....    ...     . 
T Consensus        40 ~G~i~s~~di~~~~~~~~vsy~----g~~~-------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~  108 (539)
T PF03137_consen   40 SGLISSSYDIGSLVVVLFVSYF----GGRG-------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSS  108 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----hhhc-------CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccc
Confidence            4556666666666666666555    3432       45578999999999999887654322111    000     0 


Q ss_pred             ---cCc--------cCCCC-----CCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHH
Q 043156          432 ---HNM--------LDAIP-----VVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMAL  495 (578)
Q Consensus       432 ---~~~--------~~~~~-----~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~i  495 (578)
                         +-|        .+...     .+......++.++++-++.|+|..-.++...+|+-|-++++..+.+.|+...+..+
T Consensus       109 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l  188 (539)
T PF03137_consen  109 ISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL  188 (539)
T ss_dssp             -------------------------------------------SSS----------------------------------
T ss_pred             cccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence               001        00000     01222234577788889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccc------c----Ccc-CCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 043156          496 GYFFSTILVNIVNSAT------R----GIT-QSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNY  558 (578)
Q Consensus       496 g~~lg~~~~~~~~~~~------~----~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~  558 (578)
                      |-.+|..+.+.+.+.-      +    ++| +.+.|+       +.|+..|++.+++.++..+.+..+=|+..+
T Consensus       189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~Wv-------GAWWLGfli~g~~~~l~aipl~~FPk~lp~  255 (539)
T PF03137_consen  189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWV-------GAWWLGFLICGILLFLSAIPLFFFPKKLPG  255 (539)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHH-------HHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence            9999988887665321      0    111 122354       346667888888888877777776555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.06  E-value=0.06  Score=52.73  Aligned_cols=104  Identities=11%  Similarity=0.053  Sum_probs=74.8

Q ss_pred             HHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHH
Q 043156          376 AVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQF  455 (578)
Q Consensus       376 ~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  455 (578)
                      ++.+.+.+.|+...|           ..+.+|.+...+|..+.......                 .-...+.|.+.+..
T Consensus        52 ~G~~~G~l~d~~gp~-----------~~l~iG~~~~~~GY~~~~l~~~~-----------------~i~~~~~~~~~~~~  103 (250)
T PF06813_consen   52 FGILAGLLYDRFGPW-----------VVLLIGAVLGFVGYGLLWLAVSG-----------------RIPSLPVWLMCLFL  103 (250)
T ss_pred             ccHHHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHHHHHhC-----------------ccCccchHHHHHHH
Confidence            356667777766655           45678888888888776654411                 11224666666666


Q ss_pred             HHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043156          456 FIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVN  508 (578)
Q Consensus       456 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~  508 (578)
                      .+.+.+......+......+-+|+ .||.+.|+......+++.+-+.+...+.
T Consensus       104 ~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  104 FLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             HHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            777778777777777777789985 6999999999999999988887766554

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.95  E-value=0.034  Score=58.08  Aligned_cols=168  Identities=11%  Similarity=0.018  Sum_probs=116.9

Q ss_pred             HHHHhHHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCC
Q 043156          317 KIILGMIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPT  396 (578)
Q Consensus       317 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~  396 (578)
                      +++++.....+...+.|+.-.++.+.+.+.. ....       -..+.++...|+..++.+|+.+...||...|++|++ 
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvph-------k~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR-  102 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSL-GVPH-------KWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR-  102 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHc-CCCc-------ccccccccccccccceeccccccccccccccccccc-
Confidence            3444444555666677777766666554432 1222       124567777899999999999999999999987665 


Q ss_pred             CCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeecc
Q 043156          397 GITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSE  476 (578)
Q Consensus       397 ~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~  476 (578)
                           .-+.++.+..+++++++++..++-...+++.       +.+..+......++.+.+.=++.-..+.+.=++..+.
T Consensus       103 -----PfI~~~s~~i~~~l~Lig~aaDig~~lgd~~-------~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl  170 (498)
T KOG0637|consen  103 -----PFILAGSLLIAVSLFLIGYAADIGLLLGDNE-------RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADL  170 (498)
T ss_pred             -----chHHHhhHHHHHHHhhhhhHhhhhHHhcCCc-------ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHh
Confidence                 5677788888899988888775533332211       1223345556666677777777766777777888888


Q ss_pred             CCchhhHH-HHHHHHHHHHHHHHHHHHHHH
Q 043156          477 APKGIKSL-STCFLWCSMALGYFFSTILVN  505 (578)
Q Consensus       477 ~P~~~rg~-~~g~~~~~~~ig~~lg~~~~~  505 (578)
                      +-.+.+-+ +.+.+.+...+|+.+|-.+.+
T Consensus       171 ~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  171 ARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             ccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            77777777 999999999999999987765

>PRK03612 spermidine synthase; Provisional

Probab=95.90  E-value=0.068  Score=58.47  Aligned_cols=177  Identities=11%  Similarity=-0.035  Sum_probs=95.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhh-hhhhh
Q 043156           24 GIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVL-ISGSV  102 (578)
Q Consensus        24 ~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-~~~~~  102 (578)
                      +.+....+.+...+..+.|=   ..+.-.+..-+|-+..+.+.+++.+..+..++..++|+++++. -|+...+ ++..+
T Consensus        15 ~~~~l~~~~f~sg~~~L~yE---v~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l   90 (521)
T PRK03612         15 DRALLLAAVFVCAACGLVYE---LLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLAL   90 (521)
T ss_pred             hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHH
Confidence            44444444444444444433   3344555666788888999999999999999999999987553 3332211 11111


Q ss_pred             hccCCcccccCCCCCcccccc-chhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEG-SDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      ....+....+   ...  ... .....++...++.++..|+..|....+..+....+       -++..|..|....+|+
T Consensus        91 ~~~~~~~ll~---~~~--~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~-------~g~~~g~ly~~ntlGa  158 (521)
T PRK03612         91 LGGLSALILY---AAF--AFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQH-------LGHNVATVLAADYLGA  158 (521)
T ss_pred             HHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------hhhhhhhhHhHHhHHH
Confidence            1100000000   000  000 11112223334456666666666555554432211       3566788888999999


Q ss_pred             HHHHHHHHHhcc-ccCchhHHHHHHHHH-HHHHHHHH
Q 043156          182 AISVTLIVWIQD-NKGWDRGFGLSSVAV-FLATIIFA  216 (578)
Q Consensus       182 ~~~p~l~~~l~~-~~g~~~~f~i~~~~~-~~~~~~~~  216 (578)
                      ++|.++.+++.- ..|-....++.+.+. +++++.++
T Consensus       159 ~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~  195 (521)
T PRK03612        159 LVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLW  195 (521)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999887754 567444444444443 33433333

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.89  E-value=0.03  Score=58.42  Aligned_cols=184  Identities=16%  Similarity=0.110  Sum_probs=108.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhh-hhhhhhhhhc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFK-AVLISGSVEF  104 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~-~~~~~~~~~~  104 (578)
                      |...++++........|++..+.+-.-+ ..-|.+...+|.+.....+++.++..+.|.++||. ...| +.++......
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~  343 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFAL  343 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHH
Confidence            4456666666666666666655443222 34577778899999999999999999999999998 5544 3433333333


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCC-CCCChHHHhhhhhHHHHHHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQF-DEKDPIEARQMSSFFNLLFLAVCIGGAI  183 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~-~~~~~~~~~~R~~~~~~~~~~~~lG~~~  183 (578)
                      ++.++.     ..+... ....+.++.-..+.|.......|...-+..|.. |..|       +...|+.+...++-+.+
T Consensus       344 v~~~~l-----~~~t~~-~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSsGll~~~gq~f~~~  410 (480)
T KOG2563|consen  344 VGTLML-----LTCTLF-LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSSGLLNLSGQIFGVI  410 (480)
T ss_pred             HHHHHH-----HHhhcc-CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccceeEEeehhHHHHH
Confidence            221111     001111 122333445555667766777888777777765 5554       66667766666666666


Q ss_pred             HHHHHHHhccccC---chh-HHHHHHHHHHHHHHHHHhcCCCcee
Q 043156          184 SVTLIVWIQDNKG---WDR-GFGLSSVAVFLATIIFAAGLPLYRF  224 (578)
Q Consensus       184 ~p~l~~~l~~~~g---~~~-~f~i~~~~~~~~~~~~~~~~~~~~~  224 (578)
                      =..+.+...+.++   |.. .-+......++.+++..+.++++++
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R  455 (480)
T KOG2563|consen  411 LVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR  455 (480)
T ss_pred             HHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence            6666677766555   333 2222333344455555555655543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.82  E-value=0.16  Score=56.75  Aligned_cols=153  Identities=15%  Similarity=0.191  Sum_probs=106.2

Q ss_pred             CchhhHhHhHHHHHHHHHHHHHHHHH----HHhhhh-------h-c----CccCCCC--------CC----CCccchhhH
Q 043156          399 THLQRVGVGLVLSCISMAIAAIFEVI----RKDVAR-------D-H----NMLDAIP--------VV----QPLPISTFW  450 (578)
Q Consensus       399 ~~~~~~~iG~~~~~~~~~~~~~~~~~----~~~~~~-------~-~----~~~~~~~--------~~----~~~~~~~~~  450 (578)
                      ++++.+++|.++++++.++.++..-.    .++...       . +    .+.+..+        +.    ......+..
T Consensus       160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  239 (735)
T KOG3626|consen  160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL  239 (735)
T ss_pred             CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence            45578999999999999988775322    111100       0 0    0111000        01    112224456


Q ss_pred             HHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc-------cCccCCC-CCcC
Q 043156          451 LSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSAT-------RGITQSG-GWLA  522 (578)
Q Consensus       451 ~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~-------~~~~~~~-~~~~  522 (578)
                      ++++-++.|+|+.-.++...+|+-+-+-++.-..+.|+.+.++.+|-++|-++.++..+.-       .++|..+ .|+ 
T Consensus       240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI-  318 (735)
T KOG3626|consen  240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI-  318 (735)
T ss_pred             HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh-
Confidence            7778899999999999999999999999999999999999999999999998888775432       1111222 344 


Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 043156          523 GNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNY  558 (578)
Q Consensus       523 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~  558 (578)
                            +.|+..|++.+++.++..+.++++=+++.+
T Consensus       319 ------GAWWlGFLi~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  319 ------GAWWLGFLICGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence                  467778999999999988888888666554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.61  E-value=0.12  Score=58.18  Aligned_cols=131  Identities=13%  Similarity=0.157  Sum_probs=88.4

Q ss_pred             hhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCch-
Q 043156          402 QRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKG-  480 (578)
Q Consensus       402 ~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~-  480 (578)
                      +.+.++.++..+|+.++++....     .           ...............+.++|.+..-|...++..++.+++ 
T Consensus        55 ~tIl~~~ii~~lG~~llai~a~~-----~-----------~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~  118 (654)
T TIGR00926        55 KTILYLSIVYVVGHALLSFGAIP-----S-----------SGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ  118 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCc-----c-----------cccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc
Confidence            56777888888888777653200     0           000111223445667788888888899999999988754 


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 043156          481 --IKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNY  558 (578)
Q Consensus       481 --~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~  558 (578)
                        .|.....++..+.++|+++++.+.+.+....      ..+-     ...+|...|.+.+++++++.++++...+++++
T Consensus       119 ~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~------~~fg-----~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~  187 (654)
T TIGR00926       119 LSLRSRFFSFFYFAINAGSLISTIITPILRGDV------GCFG-----CQDCYPLAFGVPAILMILALIVFMAGSKMYKK  187 (654)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cccc-----cCcchHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence              3667788888889999999998888765210      0000     01246678999999999999888877766654


Q ss_pred             c
Q 043156          559 R  559 (578)
Q Consensus       559 ~  559 (578)
                      +
T Consensus       188 ~  188 (654)
T TIGR00926       188 K  188 (654)
T ss_pred             C
Confidence            4

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=94.85  E-value=1.2  Score=47.86  Aligned_cols=56  Identities=5%  Similarity=-0.013  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHH-HhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043156          453 IQFFIFGIADMF-TYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVN  508 (578)
Q Consensus       453 ~~~~l~g~g~~~-~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~  508 (578)
                      ..|+...+-... .+-..|.++.|....++..+.-++.....++|..+|+.+...+.
T Consensus       133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444443333 33488999999999999999999999999999999998887765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.61  E-value=0.26  Score=52.75  Aligned_cols=115  Identities=17%  Similarity=0.264  Sum_probs=74.8

Q ss_pred             hhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccC---C
Q 043156          402 QRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEA---P  478 (578)
Q Consensus       402 ~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~---P  478 (578)
                      .-+.+|.++..++.+.++....                    ...+.......+++..+|..+.....-+...|.+   |
T Consensus        60 ~Y~~i~~~~~~~~~~~~~~~~~--------------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p  119 (433)
T PF03092_consen   60 PYMIIGWLLGAVSALVLALLPA--------------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREP  119 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc--------------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC
Confidence            4556666666555555555331                    1123333444556677777777777766666654   5


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccc
Q 043156          479 KGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSR  555 (578)
Q Consensus       479 ~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~  555 (578)
                      ++ ||..++..+..+.+|+.++.++.|.+....                  +++..|.+.+++.++..+..+++..+
T Consensus       120 ~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~------------------~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  120 ES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSF------------------GPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             ch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcC------------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            55 888999999999999999999988776311                  22345777777777776666666665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.38  E-value=0.58  Score=42.28  Aligned_cols=62  Identities=10%  Similarity=0.225  Sum_probs=54.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043156          447 STFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVN  508 (578)
Q Consensus       447 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~  508 (578)
                      +.+.+++.-++.|++......+.-.+..+...++.+++..++++.....+.++|..+.-.+.
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888899999999999999999999999999999999999999999999987766554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=93.79  E-value=0.41  Score=50.89  Aligned_cols=133  Identities=13%  Similarity=-0.008  Sum_probs=100.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccc----
Q 043156           47 VNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIE----  122 (578)
Q Consensus        47 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  122 (578)
                      ..+..|+..+ |++....|..-+.-.+.+..+.....++.+|+ |..|+=++++........+.+    ..++...    
T Consensus       279 ~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v----~~~~~~~~~~~  352 (432)
T PF06963_consen  279 GLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCV----VSFWAPGSPFS  352 (432)
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHH----HHHhcCCCCch
Confidence            4466788766 99999999999999999999999999999998 999988888776552222210    0011111    


Q ss_pred             cchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 043156          123 GSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWI  191 (578)
Q Consensus       123 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l  191 (578)
                      ..+...++.+..+.=+|.-++.-+..-++.|..|+++      |+...|..+...++.-.+...++-.+
T Consensus       353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2345566667777677777888888999999999887      99999999999999888886555433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=93.18  E-value=2.9  Score=45.29  Aligned_cols=157  Identities=12%  Similarity=0.041  Sum_probs=90.8

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVL---HLDLAEAANQVTNYMG-TSYILSIVVALLADAFIGRFKAVL   97 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grr~~~~   97 (578)
                      +..+++++.+.+..++..+.|..+..     +++.+   ..+++.+..+-..... +..+...+-.+++|++ +|.+++-
T Consensus        20 ~~E~~k~~~l~~m~f~i~f~y~~lR~-----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy   93 (491)
T PF03219_consen   20 RSELKKFLPLALMFFFILFNYTILRD-----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFY   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence            45567788788777777666554432     22222   1245555555554433 5666677789999998 9999887


Q ss_pred             hhhhhhc-----cCCcccccCCCCCccccc----------cc---------hhHHHHHHHHHHHHhcccccc-ccccccc
Q 043156           98 ISGSVEF-----LPPPCNVFDPTAGCKKIE----------GS---------DAALLFVALYLIATGTAGIKA-ALPPYGA  152 (578)
Q Consensus        98 ~~~~~~~-----~~~~~~~~~~~~~~~~~~----------~~---------~~~~~~~~~~l~g~g~g~~~~-~~~~~v~  152 (578)
                      +....+.     ++.++.   |..-.....          ..         +.|...+..+...+-.....+ .-..+..
T Consensus        94 ~~~~~F~~fF~~f~~vly---P~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN  170 (491)
T PF03219_consen   94 IIIIPFLGFFALFAFVLY---PNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFAN  170 (491)
T ss_pred             HHHHHHHHHHHHHHHHHh---hchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655544     222221   100000000          00         111111111111111111122 2367788


Q ss_pred             cCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043156          153 DQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQD  193 (578)
Q Consensus       153 ~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~  193 (578)
                      |.++.+|      -.|.++++..+.|+|.++++.+..++.+
T Consensus       171 ~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  171 EITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             hcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887      6899999999999999999999888876

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=92.98  E-value=3.7  Score=42.16  Aligned_cols=142  Identities=12%  Similarity=0.005  Sum_probs=76.9

Q ss_pred             CcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCC
Q 043156          363 ASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQ  442 (578)
Q Consensus       363 ~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (578)
                      +.+.........+++++.+.+.|+++||+           ..+    +.++...+..+..                    
T Consensus        72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~-----------~cl----~~cily~~scl~k--------------------  116 (354)
T PF05631_consen   72 AILFVAGFASSAIFGTFVGSLADRYGRKK-----------ACL----LFCILYSLSCLTK--------------------  116 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchH-----------HHH----HHHHHHHHHHHHH--------------------
Confidence            34555667788999999999999999883           112    2222222222211                    


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHhhhhhheeec-----cCCchhhHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCccC
Q 043156          443 PLPISTFWLSIQFFIFGIADMFTYVGLLEFFYS-----EAPKGIKSLSTCFLW-CSMALGYFFSTILVNIVNSATRGITQ  516 (578)
Q Consensus       443 ~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~-----~~P~~~rg~~~g~~~-~~~~ig~~lg~~~~~~~~~~~~~~~~  516 (578)
                       ...+...+++.=++.|++..+.....-++...     -.|++..+.-.+... ..+.+-.+++.++...+.+..    +
T Consensus       117 -~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~----~  191 (354)
T PF05631_consen  117 -HSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF----G  191 (354)
T ss_pred             -hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh----C
Confidence             12255667777888899888877765554432     455555444443333 223333444444444433211    0


Q ss_pred             CCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 043156          517 SGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRY  556 (578)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~  556 (578)
                      .++-            ..|.....+.+++.++.....++.
T Consensus       192 ~g~v------------aPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  192 FGPV------------APFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             CCCc------------chHHHHHHHHHHHHHHHHhccccc
Confidence            0111            237777777777666554444443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=92.69  E-value=0.55  Score=47.65  Aligned_cols=129  Identities=16%  Similarity=0.137  Sum_probs=67.6

Q ss_pred             HHHHHHHH-HhcCCCHHHHH-HHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccc
Q 043156           47 VNLVTYFN-GVLHLDLAEAA-NQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGS  124 (578)
Q Consensus        47 ~~l~~yl~-~~lg~s~~~~~-~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (578)
                      +++..|+. .+.+++..+.. -+.=..+-.+.+..++.=.+.|..  |+|-+++--.+..+....+         ...+.
T Consensus        25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~l--rYKPvivlq~ls~v~~w~~---------lv~g~   93 (433)
T KOG3810|consen   25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYL--RYKPVVVLQALSGVPVWIM---------LVFGP   93 (433)
T ss_pred             CccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhh--hcceeeeeeccchhHHHHH---------HHhcC
Confidence            45667766 55677776654 222333444555555666788975  6554443221111111110         01122


Q ss_pred             hhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043156          125 DAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQD  193 (578)
Q Consensus       125 ~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~  193 (578)
                      +....=+.-+..|...+ ...+.++++=+..++++      +.+..+....+.-.|...|..++-.+..
T Consensus        94 sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~------Yqrvt~y~RaA~L~g~~~g~vlaQlLvs  155 (433)
T KOG3810|consen   94 SVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEM------YKRVTGYCRAAFLVGKFVGSVLAQLLVS  155 (433)
T ss_pred             CchheeeehhhcChHHH-HHHhhhheeeeecCHHH------HHHHHHHhHHHHHHHhHHHhHHHHHHhh
Confidence            32222222222222211 12344555555555554      8888899999999999888877776654

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=92.19  E-value=17  Score=38.10  Aligned_cols=59  Identities=10%  Similarity=0.175  Sum_probs=50.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 043156          446 ISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILV  504 (578)
Q Consensus       446 ~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~  504 (578)
                      -+-+|.++...++|+..+-.......++-+.+|++++-.+..+..+.-..|-+.|..+.
T Consensus       341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            35577888889999999988888889999999999999999998888888888777653

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=91.04  E-value=1.7  Score=42.33  Aligned_cols=108  Identities=13%  Similarity=0.094  Sum_probs=71.6

Q ss_pred             chhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccch
Q 043156          368 LPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPIS  447 (578)
Q Consensus       368 ~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (578)
                      ...+...+..++.+.+.|+.++|           +.+..+.....++.+...+..                      ...
T Consensus        47 ~~~~~~~~~~~~~g~l~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~~----------------------~~~   93 (338)
T COG0477          47 AFFLGYAIGSLLAGPLGDRYGRR-----------KVLIIGLLLFLLGTLLLALAP----------------------NVG   93 (338)
T ss_pred             HHHHHHHHHhhhhhhccccccch-----------HHHHHHHHHHHHHHHHHHhCc----------------------cch
Confidence            33455555557788887777444           344445544344433333322                      023


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhheeeccCCc-hhhHHHHHHHHH-HHHHHHHHHHHHHHhhh
Q 043156          448 TFWLSIQFFIFGIADMFTYVGLLEFFYSEAPK-GIKSLSTCFLWC-SMALGYFFSTILVNIVN  508 (578)
Q Consensus       448 ~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~-~~~ig~~lg~~~~~~~~  508 (578)
                      .+.++......+++.+...+....+..+..|+ +.|+...+.... ...++..+++.+.+.+.
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL  156 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555668888888999999999999998 778988888888 57788888886666554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=86.91  E-value=0.93  Score=47.51  Aligned_cols=64  Identities=8%  Similarity=-0.027  Sum_probs=53.9

Q ss_pred             cchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 043156          123 GSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQ  192 (578)
Q Consensus       123 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~  192 (578)
                      -++.+..++..+..|+..|..+.+....+.|..|+++      |..+++....+-++|..++.+++-++.
T Consensus       332 ipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  332 IPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3567777777778899999999999999999888776      999999999999999999987776653

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=86.31  E-value=47  Score=35.06  Aligned_cols=61  Identities=21%  Similarity=0.353  Sum_probs=47.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043156          447 STFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVN  508 (578)
Q Consensus       447 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~  508 (578)
                      +.+++-+.-+++|++... ..+.++++++.+|+++--++.+....+.-+|.+++..+...+.
T Consensus        93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv  153 (412)
T PF01770_consen   93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV  153 (412)
T ss_pred             cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666776777778877654 7788899999999999888888877777777777777766554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=86.03  E-value=55  Score=35.41  Aligned_cols=60  Identities=15%  Similarity=0.173  Sum_probs=51.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043156          448 TFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIV  507 (578)
Q Consensus       448 ~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~  507 (578)
                      +..++..+++..+.......+..++-.+++.+.+-|++|.+.|...|+|+.--..++-.+
T Consensus       405 f~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~l  464 (544)
T PF13000_consen  405 FLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWL  464 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHH
Confidence            355667788888888888999999999999999999999999999999988766655444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=85.74  E-value=7.3  Score=39.45  Aligned_cols=118  Identities=18%  Similarity=-0.004  Sum_probs=71.3

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      +..-|.++++-.........|-+ ..++......++|..+  .+.+    ...-....++.+.+..++ |-|.++.++..
T Consensus        25 ~~~~knv~i~s~~fl~~f~a~~g-l~nlq~~vn~~lg~~s--l~~~----y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~   96 (390)
T KOG3097|consen   25 LGILKNVLILSIAFLLTFTAYLG-LQNLQTSVNYDLGTVS--LGAL----YLSLIDSSMFMPLLIRFL-GTKWTMVLAVF   96 (390)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhcCcccch--hhhh----hHHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence            34456777766555554444443 3455555544444222  2222    222233344444777776 99999999888


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCC
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEK  158 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~  158 (578)
                      .+..-...           ..-+.+..++.+-+..|+|.+..+.+--+++++.-...
T Consensus        97 ~Y~lyiA~-----------Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y  142 (390)
T KOG3097|consen   97 PYALYIAA-----------NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY  142 (390)
T ss_pred             HHHHHHHh-----------hcchhHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence            77721111           22356667777778889999999999888888765543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=84.92  E-value=1.5  Score=46.87  Aligned_cols=154  Identities=10%  Similarity=-0.014  Sum_probs=81.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHH-HHHHHHHHHHHHHHHHHhHHHHHhhhccchh-hhhhhhhhh
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVL-HLDLA-EAANQVTNYMGTSYILSIVVALLADAFIGRF-KAVLISGSV  102 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~l-g~s~~-~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr-~~~~~~~~~  102 (578)
                      |++|...+..++..+....+.+-.....+.+- +.+.. -.-.+...|.++-.++..+..+.- .- ++| +.+.+..+.
T Consensus       269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~p-~~~~~~l~i~s~~  346 (437)
T TIGR00939       269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-WP-DEDSRWLPILSFL  346 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-ee-CCCccchHHHHHH
Confidence            66666666655554444444443332222221 23332 334555666777777776554321 11 222 123232222


Q ss_pred             hc--cCCccc-ccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH
Q 043156          103 EF--LPPPCN-VFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI  179 (578)
Q Consensus       103 ~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l  179 (578)
                      -.  ++.+++ .+.+-.-. ...-.+.+..++..++.|+..|...+....+..+..+++|      |..+-.+...+.++
T Consensus       347 R~iFIPlf~lcn~~~~~~~-p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~  419 (437)
T TIGR00939       347 RVLFIPLFLLCNYPQRSRL-PVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLV  419 (437)
T ss_pred             HHHHHHHHHHhcCCccccC-CeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHH
Confidence            22  222211 00000000 0012345556677888999999888888888888877655      78887788888888


Q ss_pred             HHHHHHHHH
Q 043156          180 GGAISVTLI  188 (578)
Q Consensus       180 G~~~~p~l~  188 (578)
                      |-..|..++
T Consensus       420 Gl~~Gs~l~  428 (437)
T TIGR00939       420 GLALGAVLS  428 (437)
T ss_pred             HHHHHHHHH
Confidence            888776543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=84.84  E-value=15  Score=35.95  Aligned_cols=56  Identities=13%  Similarity=0.188  Sum_probs=39.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhcc-------ccCchhHHHHHHHHHHHHHHHHHhcCCCc
Q 043156          165 QMSSFFNLLFLAVCIGGAISVTLIVWIQD-------NKGWDRGFGLSSVAVFLATIIFAAGLPLY  222 (578)
Q Consensus       165 ~R~~~~~~~~~~~~lG~~~~p~l~~~l~~-------~~g~~~~f~i~~~~~~~~~~~~~~~~~~~  222 (578)
                      +|+....+..++.|+|++++-..  ++..       .-.|++++.+.+++.++-++++.++.++.
T Consensus         3 ~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~f   65 (267)
T PF07672_consen    3 KKSILSQFNPWGFNIGTIIVNIP--FLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNF   65 (267)
T ss_pred             ccceeeeeccccchhhHHHHHhh--HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            47777777888889999887432  3221       12499999998888877777777766554

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.18  E-value=10  Score=40.68  Aligned_cols=106  Identities=16%  Similarity=0.127  Sum_probs=66.8

Q ss_pred             HHHHHHHHhHHHHHh---hhccchhhhhhhhhhhhccCCccccc-CC-------CCCccccccchhHHHHHHHHHHHHhc
Q 043156           72 MGTSYILSIVVALLA---DAFIGRFKAVLISGSVEFLPPPCNVF-DP-------TAGCKKIEGSDAALLFVALYLIATGT  140 (578)
Q Consensus        72 ~~~~~~~~~~~G~la---D~~~Grr~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~l~g~g~  140 (578)
                      ..+..++.++.+.++   +++ ||++++.++.++...+.++... .|       +........++.....+.-++.|++.
T Consensus       289 g~g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D  367 (461)
T KOG3098|consen  289 GLGEVIGGLDFSILSKRIRGF-GRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD  367 (461)
T ss_pred             hHHHHHHHHHHHHHhhhhhhc-ccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence            444555555555555   555 8899888887776644322211 00       00001112334556666778889999


Q ss_pred             cccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043156          141 AGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISV  185 (578)
Q Consensus       141 g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p  185 (578)
                      +...+..+.++++.+|.+       |..+++++..-..++..++-
T Consensus       368 ~~~~t~~~~ii~~~~~~~-------~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  368 ACFNTQRYVIIALLYPDD-------RAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             HHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999543       78888887666666665543

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=82.12  E-value=74  Score=34.30  Aligned_cols=161  Identities=12%  Similarity=0.024  Sum_probs=93.3

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHL---DLAEAANQVTNYMG-TSYILSIVVALLADAFIGRFKAVL   97 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~---s~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grr~~~~   97 (578)
                      |..++++..+.+..++..+.|..+..     +.+.+.+   +++.+.++-...-. ++.+..++-+++.++. -|.+++.
T Consensus        23 r~E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~   96 (509)
T COG3202          23 RYELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFY   96 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHH
Confidence            34567777777777777666665443     3444443   34555666666655 6788888899999997 9999887


Q ss_pred             hhhhhhc-----cCCcccccC----C-----------CCCc--cccccchhHHHHHHHHHHHHhcccccc-ccccccccC
Q 043156           98 ISGSVEF-----LPPPCNVFD----P-----------TAGC--KKIEGSDAALLFVALYLIATGTAGIKA-ALPPYGADQ  154 (578)
Q Consensus        98 ~~~~~~~-----~~~~~~~~~----~-----------~~~~--~~~~~~~~~~~~~~~~l~g~g~g~~~~-~~~~~v~~~  154 (578)
                      +-+..+.     +|.++..+-    |           .+..  +.-.--+.|...+..+...+=...... .-.....|+
T Consensus        97 ~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNei  176 (509)
T COG3202          97 IILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEI  176 (509)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6655554     222221100    0           0000  000000111111111111111111111 234567888


Q ss_pred             CCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 043156          155 FDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDN  194 (578)
Q Consensus       155 ~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~  194 (578)
                      +..+|      -.|.++.++.+.|++..++..+..++.++
T Consensus       177 tt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         177 TTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             hhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            88776      68999999999999999999999988763

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=81.79  E-value=78  Score=33.87  Aligned_cols=59  Identities=8%  Similarity=0.158  Sum_probs=51.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043156          447 STFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVN  505 (578)
Q Consensus       447 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~  505 (578)
                      +-++.++..++.|+..+........+..+.+++++|..+..+..++-.+|-.+|+.+.-
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666899999999999888899999999999999999999999999999887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	578
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		6e-04

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 130 FVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIV 189
           +  L+LIA G+ GIK  +  +  DQFD+ +   A++    F++ +  +  G   +   + 
Sbjct: 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA---FDMFYFTINFGSFFASLSMP 169
Query: 190 WIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLY 222
            +  N G    FG+  V +F+AT+ F  G   Y
Sbjct: 170 LLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRY 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	578
2xut_A	524	Proton/peptide symporter family protein; transport	1e-104
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	9e-11

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  324 bits (833), Expect = e-104
 Identities = 90/532 (16%), Positives = 183/532 (34%), Gaps = 54/532 (10%)

Query: 37  FENLATIALGVNLVTY------FNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFI 90
            E  +   +   L  +       +    L  A A +   +++   Y   ++   +AD F 
Sbjct: 23  CERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFF 82

Query: 91  GRFKAVLISGSVEFLPPPCNVFDPTAG--CKKIEGSDAALLFVALYLIATGTAGIKAALP 148
           G++  +L    +  +           G     I        +  L+LIA G+ GIK  + 
Sbjct: 83  GKYNTILWLSLIYCV-----------GHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS 131

Query: 149 PYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAV 208
            +  DQFD+ +          F++ +  +  G   +   +  +  N G    FG+  V +
Sbjct: 132 SFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLM 188

Query: 209 FLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAA 268
           F+AT+ F  G   Y     +        + V  +A+   K+E   +   +  +     AA
Sbjct: 189 FVATVFFWLGRKRYIHMPPEPKD-PHGFLPVIRSALLT-KVEGKGNIGLVLALIGGVSAA 246

Query: 269 IETEFLPHRDIFRFLDKAAIQKTSTENL-EITEAPNPWKLCRVTQVENAKIILGMIPIFC 327
                +P   I   L  A +            +     K      V+  + +L ++ +F 
Sbjct: 247 YALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFA 306

Query: 328 CTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPF 387
                     Q  +  I Q   M           PA +  L  L ++L +P  + +  P 
Sbjct: 307 LVTPFWSLFDQKASTWILQANDM----VKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPA 362

Query: 388 AGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPIS 447
             ++       T L+++G G+ ++ +S  +    +++                     +S
Sbjct: 363 IERMGVKL---TALRKMGAGIAITGLSWIVVGTIQLMMDG---------------GSALS 404

Query: 448 TFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIV 507
            FW  + + +    ++      LEF YS+APK +K     F   S+ +G  +  +    V
Sbjct: 405 IFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV 464

Query: 508 NSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYR 559
            S T         +    ++     +FF+     + +   V+   +  Y  +
Sbjct: 465 KSPT-----VTEQIVQTGMSVTAFQMFFFA--GFAILAAIVFALYARSYQMQ 509

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 63.2 bits (154), Expect = 9e-11
 Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 14/168 (8%)

Query: 51  TYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCN 110
               G LH+  A AA+ +  Y    Y+   +   +AD  IG   AV   G +  L     
Sbjct: 43  LISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL 102

Query: 111 VFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFF 170
                          A+ LF ++ LI  GT  +K  +       +DE D     +  + F
Sbjct: 103 ALPF----------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGF 148

Query: 171 NLLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAG 218
           ++    + +G  I+  ++   Q+  G+   F L+++ +F+  +++  G
Sbjct: 149 SIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	578
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.95
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.88
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.42
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.36
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.28
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.12
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.94
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.92
2xut_A	524	Proton/peptide symporter family protein; transport	98.5

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=4e-32  Score=292.90  Aligned_cols=461  Identities=18%  Similarity=0.200  Sum_probs=306.3

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhh-ccchhh
Q 043156           21 KHGGIKTSLLILAAFGFENLATIALGVNLVTYFNGV-----LHLDLAEAANQVTNYMGTSYILSIVVALLADA-FIGRFK   94 (578)
Q Consensus        21 ~~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Grr~   94 (578)
                      .++++|..+.+.+..++..+++|++.++++.|++++     +|+|..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~   86 (491)
T 4aps_A            8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP   86 (491)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence            456788999999999999999999999999999998     99999999999999999999999999999999 8 9999


Q ss_pred             hhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHH
Q 043156           95 AVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLF  174 (578)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~  174 (578)
                      ++.++.++..++.++.          ....+...++++|++.|++.+...|+..++++|++|+++    ++|+.++++++
T Consensus        87 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~  152 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVL----------ALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFV  152 (491)
T ss_dssp             HHHHHHHHHHHHHHHH----------HSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----------HHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----ccceeeehHHH
Confidence            9999999988776554          445678889999999999999999999999999999876    24777888899


Q ss_pred             HHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecC---CCCcchHHHHHHHHHHHHHhcccCC
Q 043156          175 LAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQV---VQGSSVLIEIIQVYVAAIRNRKLEL  251 (578)
Q Consensus       175 ~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  251 (578)
                      .+.++|..++|.+++++.++.||++.|++.++..+++.+..++..++..+++   ++++....+..+....         
T Consensus       153 ~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  223 (491)
T 4aps_A          153 FGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVK---------  223 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHH---------
Confidence            9999999999999999999899999999988777666665554433322211   1110011111100000         


Q ss_pred             CCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHH
Q 043156          252 PEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIV  331 (578)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  331 (578)
                      ....  +.......-...........+................    ..  ..|+... ....++++......++.....
T Consensus       224 ~g~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  294 (491)
T 4aps_A          224 VSLA--VAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFY----FA--WMISSVK-VTSTEHLRVVSYIPLFIAAVL  294 (491)
T ss_dssp             CCCC--CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH----HH--HHC-------------CTTHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHH----HH--HHhhccc-ccHHHHHHHHHHHHHHHHHHH
Confidence            0000  0000000000000000000000000000000000000    00  0011000 112334444555566666677


Q ss_pred             HHHhhhccchhhhhhhcc-CCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHH
Q 043156          332 MTLCLAQLQTFSIQQGLT-MDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVL  410 (578)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~  410 (578)
                      ++..+.+..+.+..+... .+.+     ....+.+...+.+..++..++.+++.||++||.      ......+.+|.++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~  363 (491)
T 4aps_A          295 FWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHH
Confidence            777777666543333221 1211     134567788888999999999999999888773      2445667788888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHH
Q 043156          411 SCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLW  490 (578)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~  490 (578)
                      .+++++++.......               ....+.+.+++++.+++.+++.+...|..++++.+.+|++.||+++|+.+
T Consensus       364 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~  428 (491)
T 4aps_A          364 AGLSFLLMAIPGALY---------------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWF  428 (491)
T ss_dssp             HHHHHTTTHHHHHHC---------------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHH
T ss_pred             HHHHHHHHHHHHHhc---------------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            888887776654211               01123466778888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 043156          491 CSMALGYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYR  559 (578)
Q Consensus       491 ~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~  559 (578)
                      +...+|+.+++.+.+.+.+                   .++...|+..+++++++.++.+++.++.+++
T Consensus       429 ~~~~~g~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          429 LSSSVGSALNAQLVTLYNA-------------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGGG-------------------SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999877652                   1234678888888888888888877766544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=1.4e-31  Score=291.33  Aligned_cols=485  Identities=17%  Similarity=0.258  Sum_probs=293.7

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLH------LDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKA   95 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~   95 (578)
                      ++++|.++.+.+..++..+++|++.++++.|+++++|      ++..+++++.+.+.++..++.+++|+++||++|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~   87 (524)
T 2xut_A            8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT   87 (524)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            4567788889999999999999999999999999999      9999999999999999999999999999994499999


Q ss_pred             hhhhhhhhccCCcccccCCCCCccccccc-hhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhH---HH
Q 043156           96 VLISGSVEFLPPPCNVFDPTAGCKKIEGS-DAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSF---FN  171 (578)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~---~~  171 (578)
                      +.++.++..++.++.          .... +.+.+++.|++.|++.+...|+..++++|++|+++      |++.   ++
T Consensus        88 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~  151 (524)
T 2xut_A           88 ILWLSLIYCVGHAFL----------AIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQKAFD  151 (524)
T ss_dssp             HHHHHHHHHHHHHHH----------HHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----------HHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHHHHHH
Confidence            999998888665553          3344 77889999999999999999999999999999887      7554   45


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCC
Q 043156          172 LLFLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLEL  251 (578)
Q Consensus       172 ~~~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (578)
                      +++.+.++|..++|.+++++.+..||++.|++.+++.+++.+..++..++.++++|++ ++..+..+.+....+++... 
T Consensus       152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-  229 (524)
T 2xut_A          152 MFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEP-KDPHGFLPVIRSALLTKVEG-  229 (524)
T ss_dssp             HHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------------CTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC-ccchhHHHHHHHHHhhhhcc-
Confidence            5999999999999999999998889999999988887766665555444443332322 22111111111111111100 


Q ss_pred             CCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhh---hccCccccccccCCCCCc-------cccchhhhhHHHHHh
Q 043156          252 PEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAI---QKTSTENLEITEAPNPWK-------LCRVTQVENAKIILG  321 (578)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~k~~~~  321 (578)
                      ++......+.   .+.........+......+.....   ...+      .....+|+       .+.....+++|+...
T Consensus       230 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (524)
T 2xut_A          230 KGNIGLVLAL---IGGVSAAYALVNIPTLGIVAGLCCAMVLVMG------FVGAGASLQLERARKSHPDAAVDGVRSVLR  300 (524)
T ss_dssp             HHHHHHHHHH---HHHHHHHHTGGGTTTTCSSHHHHHHHHHHHH------HHHTGGGTHHHHSCCSCCSSSSTTTTTHHH
T ss_pred             cCccchhhhh---hhhhhhhhhhcccchhhhhhhhhhhhhhhhc------ccccchhhHHhhhhccccHhHHHHHHHHHH
Confidence            0000000000   000000000000000000000000   0000      00001220       011112234455555


Q ss_pred             HHHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCch
Q 043156          322 MIPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHL  401 (578)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~  401 (578)
                      ...++.....++..+.+..+.+..+....+...   + .+.+.+...+.+..++..++.+++..+..+|.++   +.+..
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  373 (524)
T 2xut_A          301 ILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTAL  373 (524)
T ss_dssp             HHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCH
T ss_pred             HHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC---CCChH
Confidence            555556666666666666665555443333221   0 1334556667778888888888876444444321   22445


Q ss_pred             hhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchh
Q 043156          402 QRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGI  481 (578)
Q Consensus       402 ~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~  481 (578)
                      +++.+|+++.+++++++++.....               +.....+.+++++.+++.+++++...+..++++.+.+|+++
T Consensus       374 ~~~~~g~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~  438 (524)
T 2xut_A          374 RKMGAGIAITGLSWIVVGTIQLMM---------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM  438 (524)
T ss_dssp             HHHHTHHHHHHHHHHTTTTTTTTT---------------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh---------------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            667778888888877665532100               00113466778888999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCcCCC-CCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 043156          482 KSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWLAGN-NINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRP  560 (578)
Q Consensus       482 rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~  560 (578)
                      ||+++|++++..++|+.+++.+.+.+.+.+.     .+|.. + ..+.  ..+.|++.+++++++.++++++.+++++++
T Consensus       439 ~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-----~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (524)
T 2xut_A          439 KGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-----TEQIV-QTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQD  510 (524)
T ss_dssp             CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH-----HHHHH-HHHSCH--HHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhccccc-----ccccc-cccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            9999999999999999999999987763110     01211 0 0111  123488888888998888888877776554


Q ss_pred             ccc
Q 043156          561 QTS  563 (578)
Q Consensus       561 ~~~  563 (578)
                      .++
T Consensus       511 ~~~  513 (524)
T 2xut_A          511 HYR  513 (524)
T ss_dssp             ---
T ss_pred             hhh
Confidence            443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.95  E-value=1.6e-28  Score=261.20  Aligned_cols=402  Identities=11%  Similarity=-0.036  Sum_probs=261.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156           24 GIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE  103 (578)
Q Consensus        24 ~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~  103 (578)
                      +++.++.+.+..+...+..+...+.++ ++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~  102 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence            345566666666766666665556665 455677 9999999999999999999999999999998 9999999999998


Q ss_pred             ccCCcccccCCCCCccccc----cchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIE----GSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI  179 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l  179 (578)
                      +++.++.          ..    ..+.+.++++|++.|++.+...++..++++|++|+++      |++++++.+.+.++
T Consensus       103 ~~~~~~~----------~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~  166 (451)
T 1pw4_A          103 AAVMLFM----------GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNV  166 (451)
T ss_dssp             HHHHHHH----------HHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHH
T ss_pred             HHHHHHH----------HhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHH
Confidence            8776554          33    5677889999999999999999999999999999876      99999999999999


Q ss_pred             HHHHHHHHHHHhccccC-chhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhh
Q 043156          180 GGAISVTLIVWIQDNKG-WDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMEL  258 (578)
Q Consensus       180 G~~~~p~l~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (578)
                      |.+++|.+++++.+..| ||+.|++.+++.++..+..++..++.+.+....                    ...+... .
T Consensus       167 g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~-~  225 (451)
T 1pw4_A          167 GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP--------------------PIEEYKN-D  225 (451)
T ss_dssp             HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC--------------------SCTTTCC-C
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC--------------------Chhhhcc-c
Confidence            99999999999888888 999999988876665554444333221111000                    0000000 0


Q ss_pred             hhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHH-HHHHHHHHHHhhh
Q 043156          259 YEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIP-IFCCTIVMTLCLA  337 (578)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~  337 (578)
                      .+.                   +..+....             ...++..........+.+..... .++....++....
T Consensus       226 ~~~-------------------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (451)
T 1pw4_A          226 YPD-------------------DYNEKAEQ-------------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD  273 (451)
T ss_dssp             ---------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc-------------------cchhhhhc-------------ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            000                   00000000             00000000000000111111111 1111111111111


Q ss_pred             ccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccc--cccccCCCCCCCchhhHhHhHHHHH-HH
Q 043156          338 QLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPF--AGKITGNPTGITHLQRVGVGLVLSC-IS  414 (578)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l--~~r~~~~~~~~~~~~~~~iG~~~~~-~~  414 (578)
                      . .+.+..+..+.+       ....+.+.....+..++..++.+++.||+  .+|           +.+.++.++.. ++
T Consensus       274 ~-~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----------~~~~~~~~~~~~~~  334 (451)
T 1pw4_A          274 W-SPTYLKEVKHFA-------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVFFMTLVTIA  334 (451)
T ss_dssp             H-HHHHBTTBSCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHHHHHHH
Confidence            1 122211111111       11123455566777888888899998887  555           33444444443 44


Q ss_pred             HHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHH
Q 043156          415 MAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMA  494 (578)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~  494 (578)
                      ++++.+.                      .+.+.+......++.+++.....+..+.+..+.+|++.||++.|+.+....
T Consensus       335 ~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  392 (451)
T 1pw4_A          335 TIVYWMN----------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY  392 (451)
T ss_dssp             HHHTTSC----------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHh----------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence            4433221                      112455566667778888888888888999999999999999999999999


Q ss_pred             H-HHHHHHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 043156          495 L-GYFFSTILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRY  556 (578)
Q Consensus       495 i-g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~  556 (578)
                      + |..+++.+.+.+.+.                  .+++..|+..+++++++.++.++..++.
T Consensus       393 ~~g~~~~~~~~g~l~~~------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (451)
T 1pw4_A          393 LGGSVAASAIVGYTVDF------------------FGWDGGFMVMIGGSILAVILLIVVMIGE  437 (451)
T ss_dssp             HHHHHHHHHHHHHHHHS------------------SCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh------------------cCcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9 999999999987631                  1356788888888888888777765443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=1.2e-27  Score=257.86  Aligned_cols=403  Identities=10%  Similarity=0.048  Sum_probs=236.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCC--------CCccccccchhHHHHHH
Q 043156           61 LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPT--------AGCKKIEGSDAALLFVA  132 (578)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  132 (578)
                      ..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++.++.++..+++.        .......+.+...++++
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~  132 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY  132 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence            45678899999999999999999999998 9999999999888866544321110        01111245788999999


Q ss_pred             HHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc--------cCchhHHHHH
Q 043156          133 LYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLIVWIQDN--------KGWDRGFGLS  204 (578)
Q Consensus       133 ~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~~~l~~~--------~g~~~~f~i~  204 (578)
                      |+++|+|.|+..+..+++++|..|++.      |++..++.+.+..+|..+++.++..+...        .+|++.+.+.
T Consensus       133 R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (491)
T 4gc0_A          133 RIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASE  206 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhh
Confidence            999999999999999999999999987      99999999999999999998887766432        2466666655


Q ss_pred             HHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCc--cch
Q 043156          205 SVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDI--FRF  282 (578)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  282 (578)
                      .+..++..+..++                                 .||+|+++..+++.++.....++....+.  .+.
T Consensus       207 ~~~~~~~~~~~~~---------------------------------~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~  253 (491)
T 4gc0_A          207 CIPALLFLMLLYT---------------------------------VPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV  253 (491)
T ss_dssp             HHHHHHHHHHGGG---------------------------------SCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhc---------------------------------CCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence            5544443332221                                 12233333222222221111111000000  000


Q ss_pred             hhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHH-HHHHHHHHhhhccchhhhhhhccCCCCCCCceeeC
Q 043156          283 LDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIF-CCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIP  361 (578)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (578)
                      .+........+      .  ...    ......+++........ ............+.+.+.... ..+       ...
T Consensus       254 ~~~~~~~~~~~------~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~  313 (491)
T 4gc0_A          254 QEIKHSLDHGR------K--TGG----RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL-GAS-------TDI  313 (491)
T ss_dssp             HHHHHHHHHHH------H--HTT----HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-SCC-------HHH
T ss_pred             HHHHHHHHhhh------h--hhh----HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc-CCC-------ccc
Confidence            00000000000      0  000    00000011111111110 000000000011111111111 000       001


Q ss_pred             CCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCC
Q 043156          362 PASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVV  441 (578)
Q Consensus       362 ~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (578)
                      .........+..++...+...+.||++||           +.+..+...++++++.++.....                 
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----------~~~~~~~~~~~~~~~~l~~~~~~-----------------  365 (491)
T 4gc0_A          314 ALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFYT-----------------  365 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHHHHHHHT-----------------
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhccchHHHHHHHHHHHHHHhc-----------------
Confidence            11223334566677777888888888888           45667777777777666554311                 


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccCCCCCc
Q 043156          442 QPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNSATRGITQSGGWL  521 (578)
Q Consensus       442 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~  521 (578)
                        .......++..++..........|..+.+..|.+|++.|++++|+.+..+++++.+++.+.+.+....        |.
T Consensus       366 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~--------~~  435 (491)
T 4gc0_A          366 --QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS--------WL  435 (491)
T ss_dssp             --TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH--------HH
T ss_pred             --ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence              11122222222222223333456778889999999999999999999999999999998888764211        00


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccccccccccC
Q 043156          522 AGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYRPQTSVG  565 (578)
Q Consensus       522 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~  565 (578)
                      .    ...+....|++.+++++++.++.+++.+++|+++.|+.+
T Consensus       436 ~----~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~  475 (491)
T 4gc0_A          436 V----AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE  475 (491)
T ss_dssp             H----HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred             H----hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence            0    001223568899999999999999999999999988755

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=6.6e-26  Score=240.13  Aligned_cols=358  Identities=14%  Similarity=0.092  Sum_probs=240.3

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhh
Q 043156           22 HGGIKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGS  101 (578)
Q Consensus        22 ~~~~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~  101 (578)
                      +++++.+..+....+...+......+.++ ++++++|+|..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            44566666666677777777665555554 57889999999999999999999999999999999998 99999999999


Q ss_pred             hhccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          102 VEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      +.+++.++.       .......+++.++++|++.|++.+...+...++++|++|+++      |++.+++.+.+.++|.
T Consensus       100 ~~~~~~~~~-------~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~  166 (438)
T 3o7q_A          100 LYALGAALF-------WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGA  166 (438)
T ss_dssp             HHHHHHHHH-------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-------HhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHH
Confidence            988665542       001235688899999999999999999999999999999987      9999999999999999


Q ss_pred             HHHHHHHHHhc-cccC-------------------------chhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHH
Q 043156          182 AISVTLIVWIQ-DNKG-------------------------WDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIE  235 (578)
Q Consensus       182 ~~~p~l~~~l~-~~~g-------------------------~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (578)
                      .++|.+++++. +..+                         ||+.|++.++..++..+..+....  ++.++++      
T Consensus       167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~------  238 (438)
T 3o7q_A          167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDN------  238 (438)
T ss_dssp             HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTC------
T ss_pred             HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Ccccccc------
Confidence            99999999987 5544                         999998877665555444333211  1111000      


Q ss_pred             HHHHHHHHHHhcccCCCCCchhhhhhchhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhh
Q 043156          236 IIQVYVAAIRNRKLELPEDPMELYEINMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVEN  315 (578)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (578)
                                      ++++                      +..+.  ..                 +++    +..+ 
T Consensus       239 ----------------~~~~----------------------~~~~~--~~-----------------~~~----~~~~-  256 (438)
T 3o7q_A          239 ----------------HSDA----------------------KQGSF--SA-----------------SLS----RLAR-  256 (438)
T ss_dssp             ----------------CCCS----------------------STTSH--HH-----------------HHH----HHTT-
T ss_pred             ----------------cccc----------------------cccch--hh-----------------hHH----HHHh-
Confidence                            0000                      00000  00                 000    0000 


Q ss_pred             HHHHHhH-HHHHHHHHHHHHhhhccchhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCC
Q 043156          316 AKIILGM-IPIFCCTIVMTLCLAQLQTFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGN  394 (578)
Q Consensus       316 ~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~  394 (578)
                      .+++... +..++............+.++..+..+.+.       ...+.+.....+..++..++.+++.||+.+|    
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~----  325 (438)
T 3o7q_A          257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-------GFAANYLTGTMVCFFIGRFTGTWLISRFAPH----  325 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH----
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----
Confidence            1111111 111111111222222222221222212121       1123445556677788888899999888776    


Q ss_pred             CCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheee
Q 043156          395 PTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFY  474 (578)
Q Consensus       395 ~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~  474 (578)
                             +.+.++.++..+++++..+..                        +. +....+++.+++.+...|..+++..
T Consensus       326 -------~~~~~~~~~~~~~~~~~~~~~------------------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~  373 (438)
T 3o7q_A          326 -------KVLAAYALIAMALCLISAFAG------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGI  373 (438)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHCC------------------------HH-HHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHHHHHcC------------------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   456667777766665554421                        22 2334457778888888899999989


Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043156          475 SEAPKGIKSLSTCFLWCSMALGYFFSTILVNIVNS  509 (578)
Q Consensus       475 ~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~~~~  509 (578)
                      +..|++ ++.+.++.. ...+|+.+++.+.+.+.+
T Consensus       374 ~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~  406 (438)
T 3o7q_A          374 KNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD  406 (438)
T ss_dssp             SSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             hhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence            999977 999999887 677999999999998874

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=2.6e-24  Score=223.41  Aligned_cols=346  Identities=12%  Similarity=0.053  Sum_probs=229.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCc
Q 043156           29 LLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPP  108 (578)
Q Consensus        29 ~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~  108 (578)
                      +.++...++..+......+.++. +.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            44566667777776666666665 5678999999999999999999999999999999998 999999999988886655


Q ss_pred             ccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043156          109 CNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAISVTLI  188 (578)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~p~l~  188 (578)
                      +.          ...++...+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++|.++
T Consensus        81 ~~----------~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~  144 (375)
T 2gfp_A           81 VA----------VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIG  144 (375)
T ss_dssp             HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH----------HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHH
Confidence            53          345688899999999999999999999999999999887      99999999999999999999999


Q ss_pred             HHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchhhhhh
Q 043156          189 VWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMDKEAA  268 (578)
Q Consensus       189 ~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (578)
                      +++.++++||+.|++.++..++..+...+..++   +++.+ +                     ++     +        
T Consensus       145 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~---------------------~~-----~--------  186 (375)
T 2gfp_A          145 GLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE---TRPVD-A---------------------PR-----T--------  186 (375)
T ss_dssp             HHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC---CSTTT-C---------------------CC-----C--------
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc---cCCCC-c---------------------cc-----c--------
Confidence            999988899999998777655544322222111   11100 0                     00     0        


Q ss_pred             hhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHH-HHHHHHHHHHhhhccchhhhhhh
Q 043156          269 IETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIP-IFCCTIVMTLCLAQLQTFSIQQG  347 (578)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  347 (578)
                               +                      ...+++    +..++ |+...... .++............+.+. ++.
T Consensus       187 ---------~----------------------~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  229 (375)
T 2gfp_A          187 ---------R----------------------LLTSYK----TLFGN-SGFNCYLLMLIGGLAGIAAFEACSGVLM-GAV  229 (375)
T ss_dssp             ---------C----------------------TTTCST----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHCSCSS-HHH
T ss_pred             ---------c----------------------HHHHHH----HHhcC-cchHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence                     0                      000110    11111 22222111 1122222222222222222 211


Q ss_pred             ccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHH-HHHHHHHHHHHHHHHH
Q 043156          348 LTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVL-SCISMAIAAIFEVIRK  426 (578)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~-~~~~~~~~~~~~~~~~  426 (578)
                      .+.+.       ...+.+.....+..++..++.+++.||..+             ++..+..+ ...+.........   
T Consensus       230 ~g~~~-------~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-------------~~~~~~~~~~~~~~~~~~~~~~---  286 (375)
T 2gfp_A          230 LGLSS-------MTVSILFILPIPAAFFGAWFAGRPNKRFST-------------LMWQSVICCLLAGLLMWIPDWF---  286 (375)
T ss_dssp             HHHHH-------HHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-------------HHHHHHHHHHHTSSSSSHHHHH---
T ss_pred             hCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhh---
Confidence            11111       112344455566677777777776544332             23333333 2222221111110   


Q ss_pred             hhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 043156          427 DVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALGYFFSTILVNI  506 (578)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~~~~~  506 (578)
                                       .+.+.+.++...++.+++.+...+...++..+..| +.||++.|+.+....+|..+++.+.+.
T Consensus       287 -----------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~  348 (375)
T 2gfp_A          287 -----------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM  348 (375)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred             -----------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence                             01144556667788899999999999999999999 899999999999999999999888776


Q ss_pred             hh
Q 043156          507 VN  508 (578)
Q Consensus       507 ~~  508 (578)
                      +.
T Consensus       349 l~  350 (375)
T 2gfp_A          349 LP  350 (375)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.88  E-value=9.2e-24  Score=223.17  Aligned_cols=394  Identities=11%  Similarity=-0.002  Sum_probs=230.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |..+.+....++....+....++++.|+++++|+|..++|++.+.+.++..++.+++|+++||+ ||||+++++.+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            4556666666666667777788999999999999999999999999999999999999999998 999999998887764


Q ss_pred             CCcccccCCCCCccccccchh-HHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDA-ALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      .....       ......... ..++.++.+.+++.+...+...+.+.++.++..    ++|+..++..+...++|..++
T Consensus        86 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~g~~~~  154 (417)
T 2cfq_A           86 MFAPF-------FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRARMFGCVGWALG  154 (417)
T ss_dssp             CHHHH-------HHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCCHHHHSSSTTTHHHHH
T ss_pred             HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccchHHHHHHHHHHHHHH
Confidence            32110       000000000 012234444444444444444444444433211    236777788778889999999


Q ss_pred             HHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhhchh
Q 043156          185 VTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEINMD  264 (578)
Q Consensus       185 p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (578)
                      |.+++++.+ .+|++.|++.++..++..+..+. .+   ++++.. .                  +..+..    +    
T Consensus       155 ~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~-~~---~~~~~~-~------------------~~~~~~----~----  202 (417)
T 2cfq_A          155 ASIVGIMFT-INNQFVFWLGSGCALILAVLLFF-AK---TDAPSS-A------------------TVANAV----G----  202 (417)
T ss_dssp             HHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCS-SC---CCCSCS-S------------------CSSSSS----S----
T ss_pred             HHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHH-cC---cccccc-c------------------cccccc----c----
Confidence            999999886 58999998766553333222211 11   111100 0                  000000    0    


Q ss_pred             hhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccchhhh
Q 043156          265 KEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQTFSI  344 (578)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (578)
                                ...+..+..+..                        +..+++ +........+.....+..+.+..+.+.
T Consensus       203 ----------~~~~~~~~~~~~------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (417)
T 2cfq_A          203 ----------ANHSAFSLKLAL------------------------ELFRQP-KLWFLSLYVIGVSCTYDVFDQQFANFF  247 (417)
T ss_dssp             ----------SCCCCCCHHHHH------------------------HHTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------cccccccHHHHH------------------------HHhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      000000000000                        000111 111111111111112222222222221


Q ss_pred             hhhccCCCC-CCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHH
Q 043156          345 QQGLTMDTS-VTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEV  423 (578)
Q Consensus       345 ~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~  423 (578)
                      ...  .+.. .+   ....+.+..++.+..++..++.+++.||+++|           +.+.++.++.+++++..++.  
T Consensus       248 ~~~--~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~--  309 (417)
T 2cfq_A          248 TSF--FATGEQG---TRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA--  309 (417)
T ss_dssp             HHT--SSSHHHH---THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHH--HhccCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHh--
Confidence            111  1100 00   00012334455566677788889999888877           35556666666665444331  


Q ss_pred             HHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHH-HHHHHHHHHHHHHH
Q 043156          424 IRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCF-LWCSMALGYFFSTI  502 (578)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig~~lg~~  502 (578)
                                            .+.+.++....+.+++.....+..+.++.|..|++.||++.++ ++..+++|+.++|.
T Consensus       310 ----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~  367 (417)
T 2cfq_A          310 ----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV  367 (417)
T ss_dssp             ----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTH
T ss_pred             ----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence                                  1334444455566666666677778899999999999999998 58888999999999


Q ss_pred             HHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 043156          503 LVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRY  556 (578)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~  556 (578)
                      +.+.+.+                  ..++...|...+++++++.++.++..++.
T Consensus       368 l~G~l~~------------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          368 LAGNMYE------------------SIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHTHHH------------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             hHHHHHH------------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            9987652                  12356778888888888888777665543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.42  E-value=4.3e-13  Score=141.82  Aligned_cols=179  Identities=16%  Similarity=0.097  Sum_probs=148.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhcc--chhhhhhhhhhh
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFI--GRFKAVLISGSV  102 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~--Grr~~~~~~~~~  102 (578)
                      .|.++.+++..++....++++..+++.|+++.+|++..+++++.+...++..++.++.|+++|| +  |||+.+.++.++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~  329 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT  329 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence            3567778888888889999999999999998899999999999999999999999999999999 5  888888877665


Q ss_pred             hc-cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH-H
Q 043156          103 EF-LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI-G  180 (578)
Q Consensus       103 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l-G  180 (578)
                      .. ++.++.        ......+...+.+..++.|++.+...+....++.|.+|+++      |++++++++...++ |
T Consensus       330 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~g  395 (451)
T 1pw4_A          330 LVTIATIVY--------WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGG  395 (451)
T ss_dssp             HHHHHHHHT--------TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--------HHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHHHHHHHHHH
Confidence            55 333332        01112355666777778888888888888899999999886      99999999999999 9


Q ss_pred             HHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhc
Q 043156          181 GAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAG  218 (578)
Q Consensus       181 ~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~  218 (578)
                      ..++|.+.|++.+..||+..|++.+++.+++.+..++.
T Consensus       396 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          396 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888777766655543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.36  E-value=2.2e-12  Score=135.94  Aligned_cols=168  Identities=15%  Similarity=0.076  Sum_probs=134.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTY-FNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      |.++..++..++....++.+..+++.| +++.+|.+..+++.+.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            456667777777788888888999999 8888899999999999999999999999999999998 99999998887777


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      ++.++.          ....+... .+..++.+++.+...|...++..|.+|++       |+.+.++.. ...+|..++
T Consensus       337 ~~~~~~----------~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~g~~~~  397 (438)
T 3o7q_A          337 ALCLIS----------AFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTIIGGGIV  397 (438)
T ss_dssp             HHHHHH----------HHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTTHHHHHH
T ss_pred             HHHHHH----------HHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHHHHHHHH
Confidence            554332          22233333 33447788888988999999989999854       667777655 567999999


Q ss_pred             HHHHHHhccccC-chhHHHHHHHHHHHHHH
Q 043156          185 VTLIVWIQDNKG-WDRGFGLSSVAVFLATI  213 (578)
Q Consensus       185 p~l~~~l~~~~g-~~~~f~i~~~~~~~~~~  213 (578)
                      |.+.|++.+..| ++..|.+.+++.++..+
T Consensus       398 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          398 TPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            999999999888 99999887665544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.28  E-value=4.4e-12  Score=133.38  Aligned_cols=176  Identities=10%  Similarity=0.027  Sum_probs=126.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhh
Q 043156           27 TSLLILAAFGFENLATIALGVNLVTYFNGVLHLD---LAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVE  103 (578)
Q Consensus        27 ~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~  103 (578)
                      ..+...+..+.....++....+++.|+.+.++..   ....+...+...++..++.+++|+++||+ |||+++.++.++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~  299 (417)
T 2cfq_A          221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM  299 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence            3444444444444455555566888887766532   34457777777788888999999999998 9999998887776


Q ss_pred             ccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHH-HHHHHHHHHH
Q 043156          104 FLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNL-LFLAVCIGGA  182 (578)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~-~~~~~~lG~~  182 (578)
                      +++.++.          ....+...+++...+.+++.+...+....++.|.+|++.      |++++++ ++...++|+.
T Consensus       300 ~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~  363 (417)
T 2cfq_A          300 SVRIIGS----------SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMI  363 (417)
T ss_dssp             HHHHHHH----------TTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHH
T ss_pred             HHHHHHH----------HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHH
Confidence            6543332          222344555566666666666666666789999999875      9999998 5778889999


Q ss_pred             HHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcC
Q 043156          183 ISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGL  219 (578)
Q Consensus       183 ~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~  219 (578)
                      ++|.++|++.++.|++..|.+.+++.+++.+..+...
T Consensus       364 ~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  400 (417)
T 2cfq_A          364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             HHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999998888899999888877777666554433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.12  E-value=5.1e-11  Score=127.59  Aligned_cols=185  Identities=11%  Similarity=-0.026  Sum_probs=134.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhh-----hhhhh
Q 043156           28 SLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVL-----ISGSV  102 (578)
Q Consensus        28 ~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-----~~~~~  102 (578)
                      .+.+....++....+.....+++.|.++.++.+..+.+.+.+...++..++.++.|+++||+ |||+...     ++.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence            44455555555666666677888999988888877888888899999999999999999998 9987655     56555


Q ss_pred             hccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                      ..++.++..+.... .......+...+++..++.+++.+...|...+++.|.+|++.      |++++++++...++|..
T Consensus       364 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~  436 (491)
T 4aps_A          364 AGLSFLLMAIPGAL-YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSSSVGSA  436 (491)
T ss_dssp             HHHHHTTTHHHHHH-CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHH
Confidence            55443332000000 000112355667777888899999989999999999999987      99999999999999999


Q ss_pred             HHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCC
Q 043156          183 ISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPL  221 (578)
Q Consensus       183 ~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~  221 (578)
                      ++|.+.+++.+ .++...|.+.+++.+++.+..+...++
T Consensus       437 i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          437 LNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             HHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998876 467778888777766666665555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.94  E-value=9.5e-10  Score=117.58  Aligned_cols=183  Identities=8%  Similarity=-0.023  Sum_probs=120.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      +..........+..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI  354 (491)
T ss_dssp             THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence            3344444444444444333344444566778888888888888888899999999999999998 999999888777664


Q ss_pred             CCcccccCCCCCccccccchhHHHHHHHHHHHHh-ccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAALLFVALYLIATG-TAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g-~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      +.+...    . ........... ++...+...+ .....|....+.+|.+|++.      |++++++.+...++|+.++
T Consensus       355 ~~~~l~----~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~  422 (491)
T 4gc0_A          355 GMFSLG----T-AFYTQAPGIVA-LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFV  422 (491)
T ss_dssp             HHHHHH----H-HHHTTCCHHHH-HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH----H-HHhcccchHHH-HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHH
Confidence            432210    0 00011122222 2222222222 22234566789999999997      9999999999999999999


Q ss_pred             HHHHHHhcc------ccCchhHHHHHHHHHHHHHHHHHhcCCC
Q 043156          185 VTLIVWIQD------NKGWDRGFGLSSVAVFLATIIFAAGLPL  221 (578)
Q Consensus       185 p~l~~~l~~------~~g~~~~f~i~~~~~~~~~~~~~~~~~~  221 (578)
                      +.+.+.+.+      ..++...|++.+++.+++.++.+++.|+
T Consensus       423 ~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          423 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             HTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence            888776643      2456667888877777777666655543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.92  E-value=2.1e-10  Score=118.29  Aligned_cols=164  Identities=10%  Similarity=-0.069  Sum_probs=127.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhh-hc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV-EF  104 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~-~~  104 (578)
                      |..+...+..++....++....+.+.|+++++|.+..+.+.+.+...++..++.++.|+++||+ ||+.  ..+... ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~--~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLM--WQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHHH--HHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHH
Confidence            4567777777888888888889999999988999999999999999999999999999999998 8733  233322 22


Q ss_pred             cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHHHH
Q 043156          105 LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGAIS  184 (578)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~~~  184 (578)
                      .+..+..      .......+.+.+++..++.+++.+...+...+++.|.+| ++      |+++.++.+...++|..++
T Consensus       276 ~~~~~~~------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~~~~~~g~~~~  342 (375)
T 2gfp_A          276 AGLLMWI------PDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVGGLQNIGSGVL  342 (375)
T ss_dssp             TSSSSSH------HHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHH------HhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHHHHHHHHHHHH
Confidence            2222110      000011355666677888899999999999999999998 44      9999999999999999999


Q ss_pred             HHHHHHhccccCchhHHHHHH
Q 043156          185 VTLIVWIQDNKGWDRGFGLSS  205 (578)
Q Consensus       185 p~l~~~l~~~~g~~~~f~i~~  205 (578)
                      |.+.+.+.+..+|+..+.+.+
T Consensus       343 ~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          343 ASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             STTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcccHHHHHHH
Confidence            999999987777887776643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.50  E-value=4.5e-07  Score=97.62  Aligned_cols=141  Identities=14%  Similarity=0.136  Sum_probs=108.8

Q ss_pred             CcccCchhHHHHHHHHhhhhhhccc-cccccCCCCCCCchhhHhHhHHHHHHHHHHHHHHHHHHHhhhhhcCccCCCCCC
Q 043156          363 ASLPILPILFMILAVPVYDRIFVPF-AGKITGNPTGITHLQRVGVGLVLSCISMAIAAIFEVIRKDVARDHNMLDAIPVV  441 (578)
Q Consensus       363 ~~~~~~~~i~~il~~~l~~~l~~~l-~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (578)
                      +.+.+...+...+..++.+++.||+ ++|           +.+.++.++.+++.+++.+.                    
T Consensus        57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------  105 (524)
T 2xut_A           57 KDVFHSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIF--------------------  105 (524)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHT--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence            3455666778888899999999998 877           45677888887777766552                    


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHH---HHHHHHHHHHHHHHHHHhhhccccCccCCC
Q 043156          442 QPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCF---LWCSMALGYFFSTILVNIVNSATRGITQSG  518 (578)
Q Consensus       442 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~  518 (578)
                         +.+.+.+....++.|++.+...|...+++.+.+|++.|++..+.   .+...++|..+++.+.+.+.+         
T Consensus       106 ---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---------  173 (524)
T 2xut_A          106 ---EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK---------  173 (524)
T ss_dssp             ---SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH---------
T ss_pred             ---cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence               11556677778899999999999999999999999999877776   888899999999988776652         


Q ss_pred             CCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccc
Q 043156          519 GWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSR  555 (578)
Q Consensus       519 ~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~  555 (578)
                               ..+|+..|++.+++.++++++.++..++
T Consensus       174 ---------~~g~~~~f~~~~~~~~~~~~~~~~~~~~  201 (524)
T 2xut_A          174 ---------NFGAAVAFGIPGVLMFVATVFFWLGRKR  201 (524)
T ss_dssp             ---------TSCHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             ---------cccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                     1246678888888877777766554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	578
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.91
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.32
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.25

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.1e-27  Score=251.18  Aligned_cols=411  Identities=11%  Similarity=-0.035  Sum_probs=244.3

Q ss_pred             hhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhh
Q 043156           26 KTSLLILAAFGFENLATIA---LGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSV  102 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~---~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~  102 (578)
                      |.-|.++...++..+..|.   ..+.+.++++ ++|+|.++.|++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus        21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~   98 (447)
T d1pw4a_          21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHH
Confidence            3334444444444444443   2345556775 6899999999999999999999999999999998 999999999988


Q ss_pred             hccCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHHH
Q 043156          103 EFLPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGGA  182 (578)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~~  182 (578)
                      ..++.++..      .......+...+++.|++.|++.|...++..++++|++|+++      |++++++.+.+.++|..
T Consensus        99 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~  166 (447)
T d1pw4a_          99 AAAVMLFMG------FVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGG  166 (447)
T ss_dssp             HHHHHHHHH------HCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhcc------ccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhh
Confidence            876554420      000112466788999999999999999999999999999886      99999999999999999


Q ss_pred             HHHHHHHHhccc-cCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhh
Q 043156          183 ISVTLIVWIQDN-KGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEI  261 (578)
Q Consensus       183 ~~p~l~~~l~~~-~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (578)
                      ++|.+++.+... .+|++.|++.+++.++..++.+...++.+++.+..                    ...+... ..+.
T Consensus       167 i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~-~~~~  225 (447)
T d1pw4a_         167 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP--------------------PIEEYKN-DYPD  225 (447)
T ss_dssp             SHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC--------------------SCTTTCC-C---
T ss_pred             hhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccc--------------------hhhhhhh-hccc
Confidence            999988877654 47999999888776665555554443322211110                    0000000 0000


Q ss_pred             chhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHh-HHHHHHHHHHHHHhhhccc
Q 043156          262 NMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILG-MIPIFCCTIVMTLCLAQLQ  340 (578)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~  340 (578)
                      .                   ..+..+..             ...+..........+.... ....++.....+...... 
T Consensus       226 ~-------------------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  272 (447)
T d1pw4a_         226 D-------------------YNEKAEQE-------------LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS-  272 (447)
T ss_dssp             ------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             c-------------------hhhccccc-------------cchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhh-
Confidence            0                   00000000             0000000000000111111 111111111111111111 


Q ss_pred             hhhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHH
Q 043156          341 TFSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAI  420 (578)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~  420 (578)
                      +.+..+..+.+       ....+.......+..++...+.+++.||..++.           +...+.+...+.......
T Consensus       273 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  334 (447)
T d1pw4a_         273 PTYLKEVKHFA-------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN-----------RGATGVFFMTLVTIATIV  334 (447)
T ss_dssp             HHHBTTBSCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC-----------HHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccccc-------cchhhhhhhcchhhhhhhhhhhhhhhhhccccc-----------cccccchhHHHHHHHHHH
Confidence            11111111111       111233445556677778888888888877662           222222222222211111


Q ss_pred             HHHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHHHHHHHHH-HHH
Q 043156          421 FEVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFLWCSMALG-YFF  499 (578)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig-~~l  499 (578)
                      ..                   .....+.+..+...++.+++.....+....+..+.+|++.||+++|+.++..+++ ..+
T Consensus       335 ~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~  395 (447)
T d1pw4a_         335 YW-------------------MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA  395 (447)
T ss_dssp             TT-------------------SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-------------------hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            11                   0112345566666777788888888888899999999999999999999888874 566


Q ss_pred             HHHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 043156          500 STILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYR  559 (578)
Q Consensus       500 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~  559 (578)
                      ++.+.+.+.+.                  .+++..|+..++++++++++.+++..+.+++
T Consensus       396 ~~~~~g~~~~~------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  437 (447)
T d1pw4a_         396 ASAIVGYTVDF------------------FGWDGGFMVMIGGSILAVILLIVVMIGEKRR  437 (447)
T ss_dssp             HHHHHHHHHHS------------------SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH------------------hChHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            78888877631                  1234567777777777776666655544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.4e-24  Score=220.99  Aligned_cols=395  Identities=11%  Similarity=-0.013  Sum_probs=239.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhcc
Q 043156           26 KTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFL  105 (578)
Q Consensus        26 r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~  105 (578)
                      |..|.+....++..+.+....++++.|+++++|+|.++.|++.+.+.++..++.++.|+++||+ ||||+++++..+..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            5678888888888888888889999999999999999999999999999999999999999998 999999998887775


Q ss_pred             CCcccccCCCCCccccccchhHH----HHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHHHH
Q 043156          106 PPPCNVFDPTAGCKKIEGSDAAL----LFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCIGG  181 (578)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~lG~  181 (578)
                      +..+.          ....+...    .++.+.+.+.+.+...+.......+..+++    .+++.+..+........+.
T Consensus        86 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  151 (417)
T d1pv7a_          86 MFAPF----------FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRARMFGCVGW  151 (417)
T ss_dssp             THHHH----------HHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHSCCHHHHHHHHHHHH
T ss_pred             HHHHH----------HHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhHHHHHHHhhhhcccc
Confidence            54332          11122222    223333333333333333222222222221    1246667777888889999


Q ss_pred             HHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhcCCCceecCCCCcchHHHHHHHHHHHHHhcccCCCCCchhhhhh
Q 043156          182 AISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAAGLPLYRFQVVQGSSVLIEIIQVYVAAIRNRKLELPEDPMELYEI  261 (578)
Q Consensus       182 ~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (578)
                      .++|.+++++.+ .+|+..+........+..+...+..++.+.+++.. +...               ..          
T Consensus       152 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------~~----------  204 (417)
T d1pv7a_         152 ALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA-NAVG---------------AN----------  204 (417)
T ss_dssp             HHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS-HHHH---------------SC----------
T ss_pred             cccccccccccc-ccccccccchhhHHHHHHHHHHHHhcccccchhhh-hhhh---------------hh----------
Confidence            999999998876 45666666655554444444444333222221111 0000               00          


Q ss_pred             chhhhhhhhcccCCCCCccchhhHhhhhccCccccccccCCCCCccccchhhhhHHHHHhHHHHHHHHHHHHHhhhccch
Q 043156          262 NMDKEAAIETEFLPHRDIFRFLDKAAIQKTSTENLEITEAPNPWKLCRVTQVENAKIILGMIPIFCCTIVMTLCLAQLQT  341 (578)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~  341 (578)
                                     ..........                        +....++.............. +........
T Consensus       205 ---------------~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  244 (417)
T d1pv7a_         205 ---------------HSAFSLKLAL------------------------ELFRQPKLWFLSLYVIGVSCT-YDVFDQQFA  244 (417)
T ss_dssp             ---------------CCCCCHHHHH------------------------HHTTSSHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             ---------------cccccccccc------------------------cccccccccchhhhhHHHHHH-HHhhhcccc
Confidence                           0000000000                        000000000011111111111 111111111


Q ss_pred             hhhhhhccCCCCCCCceeeCCCcccCchhHHHHHHHHhhhhhhccccccccCCCCCCCchhhHhHhHHHHHHHHHHHHHH
Q 043156          342 FSIQQGLTMDTSVTTSFHIPPASLPILPILFMILAVPVYDRIFVPFAGKITGNPTGITHLQRVGVGLVLSCISMAIAAIF  421 (578)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~il~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~  421 (578)
                      .+.... ..+....   ............+...+...+.+++.||..+|           +.+.++.++.+++++...+.
T Consensus       245 ~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~~  309 (417)
T d1pv7a_         245 NFFTSF-FATGEQG---TRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA  309 (417)
T ss_dssp             HHHTTS-SSCHHHH---HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHHTC
T ss_pred             cccccc-ccccccc---hhhhcccccccccccccchhhhhhhhcccccc-----------cchhhhHHHHHHhhhccccc
Confidence            111100 0000000   01112233444566667777777777766665           45677777777776665552


Q ss_pred             HHHHHhhhhhcCccCCCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhheeeccCCchhhHHHHHHH-HHHHHHHHHHH
Q 043156          422 EVIRKDVARDHNMLDAIPVVQPLPISTFWLSIQFFIFGIADMFTYVGLLEFFYSEAPKGIKSLSTCFL-WCSMALGYFFS  500 (578)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~ig~~lg  500 (578)
                                              .+.+.++...++.+++.+...+...++..+.+|++.||++.|+. ++...+|..++
T Consensus       310 ------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~  365 (417)
T d1pv7a_         310 ------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM  365 (417)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHH
T ss_pred             ------------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence                                    25667777788899999999999999999999999999999975 56778999999


Q ss_pred             HHHHHhhhccccCccCCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 043156          501 TILVNIVNSATRGITQSGGWLAGNNINRNHLNLFFWLLSALSFINFSVYLFMSSRYNYR  559 (578)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~  559 (578)
                      +.+.|.+.+.                  .+++..|++.++++++..++.++..++.++.
T Consensus       366 ~~~~G~l~~~------------------~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         366 SVLAGNMYES------------------IGFQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHHHHHH------------------HCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred             HHHHHHHHHH------------------HCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            9999887631                  2456788899999988888888877765543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.3e-12  Score=135.00  Aligned_cols=178  Identities=15%  Similarity=0.077  Sum_probs=138.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhc
Q 043156           25 IKTSLLILAAFGFENLATIALGVNLVTYFNGVLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEF  104 (578)
Q Consensus        25 ~r~~~~l~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~  104 (578)
                      .|.++.+....++.....++...+.+.|+.+.++.+..+.+.....+.++..++.+++|+++||+ +|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            46677788888888888899999999999999999999999999999999999999999999998 88664333222221


Q ss_pred             ---cCCcccccCCCCCccccccchhHHHHHHHHHHHHhccccccccccccccCCCCCChHHHhhhhhHHHHHHHHHHH-H
Q 043156          105 ---LPPPCNVFDPTAGCKKIEGSDAALLFVALYLIATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLLFLAVCI-G  180 (578)
Q Consensus       105 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~~~~~~l-G  180 (578)
                         ++.++        .......+....++..++.|++.+...+....+..|.+|++.      |+++.++.+...++ |
T Consensus       327 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~g  392 (447)
T d1pw4a_         327 LVTIATIV--------YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGG  392 (447)
T ss_dssp             HHHHHHHH--------TTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--------HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHH
Confidence               11111        111223455666677777788888888888899999999876      99999998888777 5


Q ss_pred             HHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHh
Q 043156          181 GAISVTLIVWIQDNKGWDRGFGLSSVAVFLATIIFAA  217 (578)
Q Consensus       181 ~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  217 (578)
                      ..++|.+.|++.+++||+..|++.+++.+++.++...
T Consensus       393 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            6678999999999999999998877766655554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.1e-12  Score=130.66  Aligned_cols=147  Identities=11%  Similarity=0.019  Sum_probs=120.9

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhhhhhhhhhhhccCCcccccCCCCCccccccchhHHHHHHHHH
Q 043156           56 VLHLDLAEAANQVTNYMGTSYILSIVVALLADAFIGRFKAVLISGSVEFLPPPCNVFDPTAGCKKIEGSDAALLFVALYL  135 (578)
Q Consensus        56 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  135 (578)
                      +.+.+....+.......++..++.++.|++.||+ |||+++.++.++..++.++.          ...++.+.+++..++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l  321 (417)
T d1pv7a_         253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGS----------SFATSALEVVILKTL  321 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHH----------HTCCCHHHHHHHHHH
T ss_pred             ccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcc----------ccccccchhhHHHHH
Confidence            3344556677778888889999999999999998 99999999988877554443          345677778888889


Q ss_pred             HHHhccccccccccccccCCCCCChHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHH
Q 043156          136 IATGTAGIKAALPPYGADQFDEKDPIEARQMSSFFNLL-FLAVCIGGAISVTLIVWIQDNKGWDRGFGLSSVAVFLATII  214 (578)
Q Consensus       136 ~g~g~g~~~~~~~~~v~~~~~~~~~~~~~~R~~~~~~~-~~~~~lG~~~~p~l~~~l~~~~g~~~~f~i~~~~~~~~~~~  214 (578)
                      .+++.+...+...+++.|.+|++.      |++.++.. .....+|..++|.++|++.+++||+..|++.+++.++..++
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  395 (417)
T d1pv7a_         322 HMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI  395 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887      99999975 45678999999999999999999999999988776665555


Q ss_pred             HHhcC
Q 043156          215 FAAGL  219 (578)
Q Consensus       215 ~~~~~  219 (578)
                      ..+..
T Consensus       396 ~~~~l  400 (417)
T d1pv7a_         396 SVFTL  400 (417)
T ss_dssp             HHHHS
T ss_pred             HHHhh
Confidence            44443