Citrus Sinensis ID: 043183

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560----
Protein Sequence
LTRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVPRSNREDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRSTLFRKEGETSERQNNTKIFNAHWEIQCTCSTNAVIKNLRKSFFPEEQTWSSSSGDGSFLNSSRPDKMKDFGRQGNEK
Secondary Structure (PSIPRED)
ccccccHHHHHHHHcccHHHHHHHHHHccHHHHHcccccccHHHHHHHHcccHHHHHHHHHcccHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccHHHHHHcccHHHHHHHHHHccccccEEcccccccHHHHHHHccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHccHHHHHHHcccccHHHHHHccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHcccHHHHHHHHHHccHHHHHHHccccccHHHHHHHcccHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHHcccHccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHccccHccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHccccHHHcccccHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEHHcccccHHHEEEEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEEEcccHHcccccccccccccccEEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
LTRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAedlakpnkhggtALSMLLHLEGRVMMKHNRSIamvrdhnqtlpidvaaslghkdmpicmvsmnmllPDVALQLCrdrpklatlragdcetplhalarknltssnfinqNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTReypnlhisyrrfessgahlqtRNNILHLaamlppqdrlnIVSGAALQMQREFCEKVVQRGFAEaknregltpralfTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAftvprsnredtgfpfFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRSTLfrkegetserqnntkIFNAHWEIQCTCSTNAVIKNLRksffpeeqtwssssgdgsflnssrpdkmkdfgrqgnek
Flexible Loop (DISEMBL)
ltrsrrlqtyraalngdwavakSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEdlakpnkhgGTALSMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALarknltssnfinqnqRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFaeaknregltpralftkehkDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVPRSNREDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRSTLFRkegetserqnntkifnahwEIQCTCSTNAVIKNLRKSFFPeeqtwssssgdgsflnssrpdkmkdfgrqgnek
Low Complexity Region (SEG)
LTRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMfvatliatvvfvaaftvPRSNREDTGFPFFLEKFSENFSFKIFaisdaislvsssasvvnflsiLTPRYAEEDFlrllprklllglatlFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRSTLFRKEGETSERQNNTKIFNAHWEIQCTCSTNAVIKNLRKSFFPEEQTWssssgdgsflnssRPDKMKDFGRQGNEK
Disordered region (IsUnstruct)
********TYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEA********RALFT********TGEKWMKDTATSCMFVATLIATVVFVAAFTVPRSNREDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRSTLFRK*********NTKIFNAHWEIQCTCSTNAVIKNLRKSFF**********************************
Disordered Region (DISOPRED)
**RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVP**********FFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRSTLF*************************C************************************************
Disordered Region (DISEMBL)
LTRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVPRSNREDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRSTLFRKEGETSERQNNTKIFNAHWEIQCTCSTNAVIKNLRKSFFP**************LNSSRPDKMK*********
Disordered Region (DISPRO)
*TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVPRSNREDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRSTLFRKEG*******NTKIFNAHWEIQCTCSTNAVIKNL***************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LTRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVPRSNREDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRSTLFRKEGETSERQNNTKIFNAHWEIQCTCSTNAVIKNLRKSFFPEEQTWSSSSGDGSFLNSSRPDKMKDFGRQGNEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	564	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.645	0.616	0.236	2e-09

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 111/470 (23%), Positives = 194/470 (41%), Gaps = 106/470 (22%)

Query: 40  GDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL----HLEGRVMMKHNR 95
           G+TAL  AA   +++ +KEL+K    E +AK N+ G   L +      H    V++ H+ 
Sbjct: 129 GETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDA 188

Query: 96  SIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCET 155
           +++     +   P+  AA  GH ++      +N LL                 +AG+   
Sbjct: 189 TLSQTFGPSNATPLVSAAMRGHTEV------VNQLLS----------------KAGN--- 223

Query: 156 PLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSE 215
            L  ++R N       N+N         +L A    V+ ++AL           L  D +
Sbjct: 224 -LLEISRSN-------NKN-------ALHLAARQGHVEVIKAL-----------LSKDPQ 257

Query: 216 ISRLISKPGALIFDAAKQGNVGFLL-ILTREYPNLHISYRRFESSGAHLQTRNN---ILH 271
           ++R I K G      A +G    ++ +L    P + +   +  ++  H+ TR     I+ 
Sbjct: 258 LARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKKRAEIVE 317

Query: 272 LAAMLPPQDR----------LNIVSGAALQMQREFCEKVVQRGFAEAKN-----REGLTP 316
           L   LP  +           L+I  G  L  +  + ++ + R  A   N     R+ L  
Sbjct: 318 LLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRS 377

Query: 317 RALFTKEH-------------------KDLRETGEKWMKDTATSCMFVATLIATVVFVAA 357
                K                     K+LR+   + + +   S   VA L ATV F A 
Sbjct: 378 TVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAI 437

Query: 358 FTVPRSNREDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRY-AEED 416
           FTVP  +  D G    + +     SFKIF I +A++L +S A VV  ++++     AE+ 
Sbjct: 438 FTVPGGDNND-GSAVVVGR----ASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKR 492

Query: 417 FLRLLPRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIA 466
            + ++ +  L+ LA++  SVA     F  + +I++ ++  W A LV+V+ 
Sbjct: 493 VVEVINK--LMWLASMCTSVA-----FLASSYIVVGRKNEWAAELVTVVG 535

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	564
224120488	610	predicted protein [Populus trichocarpa]	0.854	0.790	0.423	1e-104
359472754	789	PREDICTED: ankyrin repeat-containing pro	0.854	0.610	0.419	1e-102
147784800	1697	hypothetical protein VITISV_029434 [Viti	0.845	0.281	0.398	8e-98
297737987	1855	unnamed protein product [Vitis vinifera]	0.817	0.248	0.401	5e-94
224136692	743	predicted protein [Populus trichocarpa]	0.836	0.635	0.390	2e-92
359473665	602	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.836	0.784	0.408	1e-91
359483665	762	PREDICTED: ankyrin repeat-containing pro	0.835	0.618	0.389	2e-88
449473453	702	PREDICTED: ankyrin repeat-containing pro	0.847	0.680	0.374	2e-85
449454911	650	PREDICTED: ankyrin repeat-containing pro	0.840	0.729	0.388	2e-84
147860696	891	hypothetical protein VITISV_011174 [Viti	0.828	0.524	0.376	2e-83

>gi|224120488|ref|XP_002331060.1| predicted protein [Populus trichocarpa] gi|222872990|gb|EEF10121.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/545 (42%), Positives = 313/545 (57%), Gaps = 63/545 (11%)

Query: 3   RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKI 62
           R R LQ Y+AAL+GDW  A+ IY +  GE+   I KRG+TAL IAAA ++  F+K+LV +
Sbjct: 46  RKRHLQLYQAALSGDWDTAEGIYKLCPGEVNARITKRGETALHIAAAAEHTHFVKQLVGM 105

Query: 63  MEAEDLAKPNKHGGTALSML----LHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHK 118
           M  E LA  +  G TA        +    +VMM     +AM R     LPI +A  LGH+
Sbjct: 106 MSIEALAYRSSAGNTAFCFAAISGVEALAKVMMDKKPDLAMTRGRGNLLPIYMATLLGHR 165

Query: 119 DM------------------PICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHAL 160
            M                   + +  +N  + DVA ++ ++   LA  R     T LHA 
Sbjct: 166 GMVSYLYDETKEQLTDGDRIKLLVALINSDIYDVAWKMLKEHRGLAYARDEHQLTALHAF 225

Query: 161 ARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRL---QALKLVERLCGKVALLSDSEIS 217
           ++K+   SN ++Q+  G + +C N   +  ++++L   QAL L++ L  +V LL DS IS
Sbjct: 226 SQKSCMPSNVVDQSPPGFWNKCLNPCFKLAQMKKLMHKQALDLIQYLWEQVVLLDDSTIS 285

Query: 218 RLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHL-------------- 263
             I KP  LIF AA++GN+  L IL R YP L     +   S  H+              
Sbjct: 286 SQIGKPWPLIFTAAERGNLDLLTILIRLYPELIFKVDQNTYSIFHIAILNRHEDILKMIY 345

Query: 264 --------------QTRNNILHLAA-MLPPQDRLNIVSGAALQMQREF-----CEKVVQR 303
                         +  NN+LHLAA +L    RLN + GAALQ+QRE       +KVVQ 
Sbjct: 346 QIGSIKNVMTIYKDREGNNMLHLAAKVLESPSRLNAIPGAALQLQRELLWFEEVKKVVQP 405

Query: 304 GFAEAKNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVPRS 363
              E KN  G TP ALF ++H+DL + GE+WM+DTA SCM VATLIATVVF AAFTVP  
Sbjct: 406 RHIEEKNFHGKTPGALFIEQHRDLMKEGEQWMRDTADSCMLVATLIATVVFAAAFTVPGG 465

Query: 364 NREDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPR 423
           N +D G P FL++ +    FK FAISDAISLV+S++S++ FLS  T RYAE++FL  LP 
Sbjct: 466 NFQDKGTPVFLKEIA----FKFFAISDAISLVTSASSLLTFLSTRTSRYAEQNFLWSLPN 521

Query: 424 KLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYD 483
           +L++GL TLFIS+ AMMV F  TFF++   + L  +I ++V+AS PVI FIWQHFRLF D
Sbjct: 522 RLIIGLTTLFISIGAMMVAFMATFFLVFGNKLLPYSIPIAVVASLPVIFFIWQHFRLFVD 581

Query: 484 VLRST 488
           ++ ST
Sbjct: 582 MIHST 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/560 (41%), Positives = 318/560 (56%), Gaps = 78/560 (13%)

Query: 3   RSRRLQTY----RAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKE 58
           RS  L+ Y     AALNGDW  AK+  +     +   I +R +TAL IAA  ++  F++E
Sbjct: 168 RSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVEE 227

Query: 59  LVKIMEAEDLAKPNKHGGTALSML----LHLEGRVMMKHNRSIAMVRDHNQTLPIDVAAS 114
           LVK+M+ +DLA  NK G TAL       +     VM+  NR + M+R      P+ +AA 
Sbjct: 228 LVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAAL 287

Query: 115 LGHKDM-------------------PICMVSMNMLLPDVALQLCRDRPKLATLRAGDCET 155
           +GHKDM                    + + ++   L DVAL +  + P+LA  R G+ +T
Sbjct: 288 VGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDGNGDT 347

Query: 156 PLHALARKNLTSSNFINQNQRGIFRRCFNL-----GAEDVEVQRLQALKLVERLCGKV-A 209
            LH LARK L    F + +Q GI+ RC           D ++  +QAL+LV++L  K+ +
Sbjct: 348 ALHVLARKPLA---FYSGSQLGIWHRCIYSFPGFKSVYDKKLMHIQALELVQQLWDKILS 404

Query: 210 LLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNL------------HIS----- 252
           L  D +I  LI  P  L+F AA+ G V F+ +L R YP+L            H++     
Sbjct: 405 LDHDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQ 464

Query: 253 ---YRRFESSGAHL--------QTRNNILHLAAMLPPQDRLNIVSGAALQMQREF----- 296
              +      GAH         +  NN+LHLA  L P +RL I SGAA Q+QRE      
Sbjct: 465 EKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKE 524

Query: 297 CEKVVQRGFAEAKNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVA 356
            EK++Q  + E KN +G TP+ LFT+EHKDL   GEKWMKDTA+SCM VATLIATV+F A
Sbjct: 525 VEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAA 584

Query: 357 AFTVPRSNREDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEED 416
           AF+VP  N +DTG P FL K S    F +FAISDA++L SS+ S++ FLSILT RYAEED
Sbjct: 585 AFSVPGGNDDDTGRPIFLTKKS----FLVFAISDALALFSSATSILIFLSILTSRYAEED 640

Query: 417 FLRLLPRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQ 476
           FL  LP +L++GLATLFISVA MM+ F  T FI+L  E +W+A  ++++A  PV LF   
Sbjct: 641 FLESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLL 700

Query: 477 HFRLFYDVL-----RSTLFR 491
            F LF D++      S +FR
Sbjct: 701 KFPLFIDMISHRYRSSIIFR 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784800|emb|CAN68568.1| hypothetical protein VITISV_029434 [Vitis vinifera]

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 234/587 (39%), Positives = 317/587 (54%), Gaps = 110/587 (18%)

Query: 3   RSRRLQTY----RAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKE 58
           RS  L+ Y     AALNGDW  AK+  +     +   I +R +TAL IAA  ++  F++E
Sbjct: 168 RSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVEE 227

Query: 59  LVKIMEAEDLAKPNKHGGTAL-----SMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAA 113
           LVK+M+ +DLA  NK G TAL     S +  +   VM+  NR + M+R      P+ +AA
Sbjct: 228 LVKLMKPDDLALQNKVGNTALCFAAASGITRI-AEVMVNKNRELPMIRGSKGVTPLYMAA 286

Query: 114 SLGHKDM-------------------PICMVSMNMLLPDVALQLCRDRPKLATLRAGDCE 154
            +GHKDM                    + + ++   L DVAL +  + P+LA  R G+ +
Sbjct: 287 LVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDGNGD 346

Query: 155 TPLHALARKNLTSSNFINQNQRGIF----------RRCFNL------------------- 185
           T LH LARK L   +     QRG+F          R C N+                   
Sbjct: 347 TALHVLARKPLAFYSG-RARQRGVFLLYSATKGEVRLCLNVIRSLCSASTHVFYXFNSQT 405

Query: 186 -------------GAEDVEVQRLQALKLVERLCGKV-ALLSDSEISRLISKPGALIFDAA 231
                           D ++  +QAL+LV++L  K+ +L  D +I  LI  P  L+F AA
Sbjct: 406 YFGLLPHAVPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLLFTAA 465

Query: 232 KQGNVGFLLILTREYPNL------------HISYRRFESS--------GAHL-------- 263
           + G V F+ +L R YP+L            H++    +          GAH         
Sbjct: 466 ELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKD 525

Query: 264 QTRNNILHLAAMLPPQDRLNIVSGAALQMQREF-----CEKVVQRGFAEAKNREGLTPRA 318
           +  NN+LHLA  L P +RL I SGAA Q+QRE       EK++Q  + E KN +G TP+ 
Sbjct: 526 EKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQI 585

Query: 319 LFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVPRSNREDTGFPFFLEKFS 378
           LFT+EHKDL   GEKWMKDTA+SCM VATLIATV+F AAF+VP  N +DTG P FL K S
Sbjct: 586 LFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKS 645

Query: 379 ENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPRKLLLGLATLFISVAA 438
               F +FAISDA++L SS+ S++ FLSILT RYAEEDFL  LP +L++GLATLFISVA 
Sbjct: 646 ----FLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVAT 701

Query: 439 MMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVL 485
           MM+ F  T FI+L  E +W+A  ++++A  PV LF    F LF D++
Sbjct: 702 MMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMI 748

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737987|emb|CBI27188.3| unnamed protein product [Vitis vinifera]

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 223/555 (40%), Positives = 305/555 (54%), Gaps = 94/555 (16%)

Query: 3   RSRRLQTY----RAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKE 58
           RS  L+ Y     AALNGDW  AK+  +     +   I +R +TAL IAA  ++  F++E
Sbjct: 168 RSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVEE 227

Query: 59  LVKIMEAEDLAKPNKHGGTALSML----LHLEGRVMMKHNRSIAMVRDHNQTLPIDVAAS 114
           LVK+M+ +DLA  NK G TAL       +     VM+  NR + M+R      P+ +AA 
Sbjct: 228 LVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAAL 287

Query: 115 LGHKDM-------------------PICMVSMNMLLPDVALQLCRDRPKLATLRAGDCET 155
           +GHKDM                    + + ++   L DVAL +  + P+LA  R G    
Sbjct: 288 VGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDG---A 344

Query: 156 PLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKV-ALLSDS 214
            +H +                  F+  +     D ++  +QAL+LV++L  K+ +L  D 
Sbjct: 345 SIHVIPG----------------FKSVY-----DKKLMHIQALELVQQLWDKILSLDHDP 383

Query: 215 EISRLISKPGALIFDAAKQGNVGFLLILTREYPNL------------HISYRRFESS--- 259
           +I  LI  P  L+F AA+ G V F+ +L R YP+L            H++    +     
Sbjct: 384 KIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFN 443

Query: 260 -----GAHL--------QTRNNILHLAAMLPPQDRLNIVSGAALQMQREF-----CEKVV 301
                GAH         +  NN+LHLA  L P +RL I SGAA Q+QRE       EK++
Sbjct: 444 LIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKII 503

Query: 302 QRGFAEAKNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVP 361
           Q  + E KN +G TP+ LFT+EHKDL   GEKWMKDTA+SCM VATLIATV+F AAF+VP
Sbjct: 504 QPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVP 563

Query: 362 RSNREDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLL 421
             N +DTG P FL K S    F +FAISDA++L SS+ S++ FLSILT RYAEEDFL  L
Sbjct: 564 GGNDDDTGRPIFLTKKS----FLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESL 619

Query: 422 PRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLF 481
           P +L++GLATLFISVA MM+ F  T FI+L  E +W+A  ++++A  PV LF    F LF
Sbjct: 620 PNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKFPLF 679

Query: 482 YDVL-----RSTLFR 491
            D++      S +FR
Sbjct: 680 IDMISHRYRSSIIFR 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136692|ref|XP_002322392.1| predicted protein [Populus trichocarpa] gi|222869388|gb|EEF06519.1| predicted protein [Populus trichocarpa]

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 211/540 (39%), Positives = 300/540 (55%), Gaps = 68/540 (12%)

Query: 10  YRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLA 69
           Y+AA+ GDW  A   +  + G I + I K  DT L IAA  K+ +F++E+VK M   DL 
Sbjct: 196 YQAAMKGDWEKADEFFKSHPGAINVRITKEMDTVLHIAAGAKHTKFVEEVVKSMTGTDLT 255

Query: 70  KPNKHGGTALSML----LHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDM----- 120
             NK+  TAL       +     +M+  NR++ M+R++    P+ +AA  GHKDM     
Sbjct: 256 LRNKYNNTALCYAAASGVTKIAEMMVSKNRNLPMMRNNRGVTPLYIAALFGHKDMVWYLY 315

Query: 121 --------------PICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLT 166
                          + + +++  L DVAL + + +P+LA  R  + ET LH LARK   
Sbjct: 316 SVTSDEYLTRDDYIGLLIATISTDLFDVALSIIQHQPELAIQRDLNGETALHVLARK--- 372

Query: 167 SSNFINQNQRGIFRRCFNL-----GAEDVEVQRLQALKLVERLCGKVALLSDSEISRLIS 221
           SS F +++  G + R            D ++   Q L+LV+    +V LL D +I+ L++
Sbjct: 373 SSAFASKSGLGFWHRFIYPFPGIKAVYDKKLMHTQVLELVKLSWEQVLLLDDCQIAELLA 432

Query: 222 KPGALIFDAAKQGNVGFLLILTREYPNL------------HIS--------YRRFESSGA 261
            P   +F AA+ G V F+  L R YP+L            HI+        +      GA
Sbjct: 433 SPSQPLFVAAEFGIVEFITALIRSYPDLIWKVNEQSRSIFHIAVAHRQEKIFSLINDIGA 492

Query: 262 HLQ--------TRNNILHLAAMLPPQDRLNIVSGAALQMQREF-----CEKVVQRGFAEA 308
           H             NILHLA M+ P+D+LN++SGAALQMQRE       EK VQ    E 
Sbjct: 493 HKDMITAYKDINNANILHLAGMIAPRDKLNVISGAALQMQRELLWFKEVEKNVQPSLKEM 552

Query: 309 KNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVPRSNREDT 368
           +++ G TPR LFT+EH+ L + GEKWMK+TA+SCM +ATLI TV+F A FTVP  N    
Sbjct: 553 RDKNGRTPRMLFTEEHRGLVKEGEKWMKNTASSCMLLATLITTVMFAAIFTVPGGNDNSK 612

Query: 369 GFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPRKLLLG 428
           G P  L     + SF +FA++DA +L SS  S++ FLSILT RYAEEDF+  LP++L++G
Sbjct: 613 GTPLVLA----STSFIVFAVADAFALFSSVTSILMFLSILTSRYAEEDFVESLPKRLVVG 668

Query: 429 LATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRST 488
           LATLF S+AAM+V F+ TF I+L     WI + +S+ +S PV LF +  F LF D++ S+
Sbjct: 669 LATLFCSIAAMLVAFAATFCIVLDHRLAWIVVPISLGSSVPVTLFAFLQFPLFVDMIHSS 728

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473665|ref|XP_003631341.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 221/541 (40%), Positives = 299/541 (55%), Gaps = 69/541 (12%)

Query: 10  YRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLA 69
           YRAA+ GDW  AK I++++   +   I   GDT L IAAA K++ F++E+VKIME EDL 
Sbjct: 54  YRAAMKGDWKTAKGIFEMFPAAVRFTITPGGDTTLHIAAAAKHVYFVEEMVKIMEPEDLE 113

Query: 70  KPNKHGGTAL----SMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMV 125
             N++  TA     +  +    + M+K N  + M+R +++  P+ VAA LGH +M   + 
Sbjct: 114 LKNQYSNTAFWFAAAAGIVGIAKAMVKKNEILPMIRAYDEMTPLHVAALLGHSEMVWYLY 173

Query: 126 S-------------------MNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLT 166
           +                   ++  L DVAL +    P LA  R G+ ET LH LARK   
Sbjct: 174 NKTDHEQLTVSDWVKLLNACISTDLYDVALDVSSHHPTLAVERDGNGETALHLLARK--- 230

Query: 167 SSNFINQNQRGIFRRCFN-LGAEDVEVQRL----QALKLVERLCGKVALLSDSEISRLIS 221
            S F   +Q  I+    N +  + VE +++    ++LKLV+ L  +V +   SEI  LI 
Sbjct: 231 PSAFSGGDQLHIWNTVINSISCKRVEDKKILRQNKSLKLVKHLWQQVIVQPHSEILDLIR 290

Query: 222 KPGALIFDAAKQGNVGFLLILTREYPNL------------HISYRRFESSGAHL------ 263
            P  L+  AA+ GN  FL  L   YP+L            HI+    + +  +L      
Sbjct: 291 SPSPLLLVAAELGNTVFLTELIAIYPDLIWEVDDHNRSIFHIAVLHRQENIFNLIYEIGS 350

Query: 264 ----------QTRNNILHLAAMLPPQDRLNIVSGAALQMQREF-----CEKVVQRGFAEA 308
                     +  NNILHLA  L P  + NIV GAALQMQRE       EK+V   F E 
Sbjct: 351 MKDLIVPNKDENDNNILHLAGRLAPPRQRNIVVGAALQMQRELLWFREVEKMVLPSFRER 410

Query: 309 KNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVPRSNREDT 368
           KNR+G TP  LFTKEHKDL + GEKWM+ TA   M VATLIATVVF AA TVP  + +DT
Sbjct: 411 KNRDGETPWDLFTKEHKDLMKEGEKWMRGTAAQSMLVATLIATVVFAAALTVPGGSNQDT 470

Query: 369 GFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSI-LTPRYAEEDFLRLLPRKLLL 427
           G P F+EK        IFA+SDAI+L +S  S++ FLSI LT RYA++DFL LLP +L+ 
Sbjct: 471 GIPXFVEK----EILHIFAVSDAIALFTSLTSILVFLSIVLTSRYADDDFLELLPSRLMF 526

Query: 428 GLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRS 487
           GL TLFIS+ +MMV F+ TFF+L +    W  ILV+V A   V L+     RL+  ++R+
Sbjct: 527 GLFTLFISIISMMVTFTATFFLLFSHGVTWAPILVAVFAFLLVTLYFSMQCRLWAHIIRA 586

Query: 488 T 488
           T
Sbjct: 587 T 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483665|ref|XP_003632996.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 213/547 (38%), Positives = 298/547 (54%), Gaps = 76/547 (13%)

Query: 10  YRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLA 69
           Y AAL+GDW VA+ I++     +   I +  +T L IAA  +++ F++ LV++M   DLA
Sbjct: 209 YLAALSGDWDVAERIFESDHQAVRARITRAQETPLHIAAGARHLTFVENLVRMMTPADLA 268

Query: 70  KPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDM---- 120
             NK G TAL     + G      VM+  N  + ++R      P+ +A  LGH++M    
Sbjct: 269 LRNKVGNTALCFAA-VSGVTKIAEVMVNKNNRLPLIRGSEGATPLHMATLLGHREMVWYL 327

Query: 121 ---------------------PICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHA 159
                                 + + ++   L DVAL++ +  PK+AT R  + ET LH 
Sbjct: 328 YNKTDSNRLTDSNRLTDEDHHGLLIAAITSDLFDVALKIVQKHPKIATARGRNGETALHI 387

Query: 160 LARKNLTSSNFINQNQRGIFRRC-----FNLGAEDVEVQRLQALKLVERLCGKVALLSDS 214
           LARK    S + + +Q G  +RC     F     D ++  +QAL+LV+ L  +V L+++ 
Sbjct: 388 LARK---PSAYQSGSQLGFLQRCIYAFPFIKVVYDQKLMHIQALELVKCLWSEVLLMNEL 444

Query: 215 EISRLISKPGALIFDAAKQGNVGFLLILTREYPNL------------HISYRRFESSGAH 262
           ++  LI  P  L+F AA+ G V FL+ L   YP+L            HI+    +    +
Sbjct: 445 QVGELIRTPSRLLFTAAELGIVEFLIELIHAYPDLIWKVDTQSRSIFHIAVVHRQEKVFN 504

Query: 263 L----------------QTRNNILHLAAMLPPQDRLNIVSGAALQMQREF-----CEKVV 301
           L                +  NN+LHLA  L P DRL   SGAALQ++RE       EK+V
Sbjct: 505 LIHEIGALKDLIASYRDENNNNMLHLAGKLAPSDRLKTDSGAALQLRRELHWFKEVEKIV 564

Query: 302 QRGFAEAKNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVP 361
           Q  + E +N EG TP+ LF +EHK L   GEKWMKDTA SCM VATLIATV+F A FTVP
Sbjct: 565 QPLYREIRNSEGKTPQTLFMEEHKVLVREGEKWMKDTAASCMLVATLIATVMFAAFFTVP 624

Query: 362 RSNREDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLL 421
             +  +TG P FL++ S    F +FA+SDA+S VSS+AS++ FLSILT RYAEEDFL  L
Sbjct: 625 GGDNGNTGIPIFLKRRS----FTVFAVSDALSFVSSAASILMFLSILTSRYAEEDFLHSL 680

Query: 422 PRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLF 481
           P +L +GL TLFISVA MM+ F  T F++L        I ++++A  PV LF    F LF
Sbjct: 681 PNRLTIGLGTLFISVATMMIAFCATLFLVLGHGLHQAKIPIALVACIPVSLFALLQFPLF 740

Query: 482 YDVLRST 488
            D++  T
Sbjct: 741 ADMVSCT 747

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449473453|ref|XP_004153885.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus] gi|449525419|ref|XP_004169715.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 211/563 (37%), Positives = 306/563 (54%), Gaps = 85/563 (15%)

Query: 4   SRRLQTYRAALNGDWAVAKSIYDV-YEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKI 62
           ++++  Y AAL GDW  A+SI        +   I +  +TAL IAA  K++EF+++L+  
Sbjct: 111 AKKISLYHAALKGDWEKAESILKADTSWSVSNYITRDNETALHIAAGAKHVEFVEKLIDT 170

Query: 63  MEAEDLAKPNKHGGTAL-----SMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGH 117
           M  +D+   N HG TAL     S ++ +   +M+K N+ + ++R      P+ +A S   
Sbjct: 171 MTLDDMVIINTHGNTALCFAATSGVVRI-AELMVKKNKDLPLIRGFGNATPLFMAISYQR 229

Query: 118 KDMPICMVS------------MNMLLP-------DVALQLCRDRPKLATLR--AGDCETP 156
           K M   + S            + +L+        D++L++    PKLA +R    + ET 
Sbjct: 230 KQMASYLFSVTDRKQLTSQDQIELLIATIHSDFYDISLEILERNPKLAIMRDTKNNNETA 289

Query: 157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDV----EVQRLQALKLVERLCGKVAL-L 211
           LH LARK    S   ++++  I+++  N   + +    +V +  A +LV+ L G V   L
Sbjct: 290 LHVLARK---PSAISSKSEISIWKKPINSWTKGIIYGKDVMKTLAHQLVKSLWGHVLREL 346

Query: 212 SDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNL------------HISYR----- 254
            + ++ + I  P  L+ DAA+ GNV FL++L + YPN+            HI+       
Sbjct: 347 PEKKMLKFIKHPTILLHDAARAGNVEFLILLIQSYPNIAWEDDDDGKNVFHIAVENRLEN 406

Query: 255 ----------------RFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREF-- 296
                           ++ ++G   + + N+LHLAA L   + LN VSGAALQMQRE   
Sbjct: 407 VFSLIHEISGLKDFSAKYRTTG---KEKYNMLHLAAKLAAPNHLNRVSGAALQMQRELLW 463

Query: 297 ---CEKVV---QRGF-AEAKNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLI 349
               EK+V   QRG   E  +   LTP  LFTKEHKDLR+ GE+WMK+TA SCM V+TLI
Sbjct: 464 FKEVEKIVLPSQRGAKCEVDSLIKLTPCELFTKEHKDLRKDGEEWMKNTANSCMLVSTLI 523

Query: 350 ATVVFVAAFTVPRSNREDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILT 409
           ATVVF AAFTVP  N  ++G P F       F F IF ISDA  LVSSS S++ FLSILT
Sbjct: 524 ATVVFAAAFTVPGGNDGNSGTPIF----QHEFWFTIFVISDAFGLVSSSTSILMFLSILT 579

Query: 410 PRYAEEDFLRLLPRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTP 469
            RYAE+DFL  LP KLL+G+A+LFIS+  M++ FS TFF+L  ++ +WI   V+ IA  P
Sbjct: 580 SRYAEDDFLHSLPSKLLVGIASLFISIVCMVIAFSATFFMLYNKKNMWIPATVTAIAIVP 639

Query: 470 VILFIWQHFRLFYDVLRSTLFRK 492
           +  F   HF L+ D   +T   +
Sbjct: 640 ISCFFALHFGLWIDTFHNTYLSR 662

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454911|ref|XP_004145197.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus] gi|449472070|ref|XP_004153487.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus]

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 213/548 (38%), Positives = 301/548 (54%), Gaps = 74/548 (13%)

Query: 11  RAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAK 70
            +ALNGDW  A++IY  YE +    I + G+T L I+AA ++ +F+K+L+  M  ++L+ 
Sbjct: 81  HSALNGDWKTAEAIYQKYELKPRDPITRNGETILHISAATQHKDFVKKLIGEMSQDELSL 140

Query: 71  PNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMV 125
            NK+G TAL      EG     ++++++N  + ++R      P+ +A S   + M   ++
Sbjct: 141 KNKNGHTALCFAAE-EGSEIIAKLLVENNEKLPLIRGDEDITPLYIAVSYRREKMASYLL 199

Query: 126 SMNML--LPD-----------------VALQLCRDRPKLATLRAG--DCETPLHALARKN 164
           S+  L  L D                 ++L++ R+ PKLAT+R G  + ET LH LARK 
Sbjct: 200 SVTDLNQLNDQEKTLLLIAAIHSDFYGISLEILRNNPKLATMRNGKNNDETALHVLARKQ 259

Query: 165 LTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVAL-LSDSEISRLISKP 223
             S  F ++ +  I+++C   G  + +  +  A +LV  L   V   L + E    I  P
Sbjct: 260 --SEIFRSRREINIWKKCIGYGTCNKDDAKTLARQLVNSLWEHVLRDLDEKETLDFIKHP 317

Query: 224 GALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRN---------------- 267
             L+ DAA+ GNV FL++L R YP++       + S  H+   N                
Sbjct: 318 TGLLHDAARAGNVEFLILLIRSYPDIVWEEDDDKKSIFHIAVENRLENVFNLIHEISGPR 377

Query: 268 --------------NILHLAAMLPPQDRLNIVSGAALQMQREF-----CEKVVQRGFAEA 308
                         N+LHLAA LP  + LN VSG ALQMQRE       EK+V     EA
Sbjct: 378 DFSTRYKTTTKGNYNMLHLAAKLPALNHLNRVSGPALQMQRELLWYKEVEKIVLPCQREA 437

Query: 309 KNREG---LTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVPRSNR 365
           K  +G   LTPR LFTKEH +LR+ GE+WMK+TA SCM VATLI TVVF AAFTVP  N 
Sbjct: 438 KCNDGSIQLTPRELFTKEHTELRKHGEEWMKNTANSCMLVATLITTVVFAAAFTVPGGND 497

Query: 366 EDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPRKL 425
           ++TG P    K   N+ F +F ISDA++L+SSS S++ FLSILT RY E+DFLR LP KL
Sbjct: 498 DETGDPTLQTK---NW-FVVFVISDAVALLSSSTSILMFLSILTSRYREDDFLRSLPSKL 553

Query: 426 LLGLATLFISVAAMMVVFSTTFFILLAQET-LWIAILVSVIASTPVILFIWQHFRLFYDV 484
           L GL  LFIS+  M+V FS TFF+L    + +W+ + ++ +A  PV  F    F+L  D 
Sbjct: 554 LSGLVLLFISIVCMVVTFSATFFLLYRHPSNIWLPMTIAAMAIIPVSCFWGLQFKLSIDT 613

Query: 485 LRST-LFR 491
             +T LFR
Sbjct: 614 FHNTYLFR 621

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860696|emb|CAN81449.1| hypothetical protein VITISV_011174 [Vitis vinifera]

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 209/555 (37%), Positives = 285/555 (51%), Gaps = 88/555 (15%)

Query: 10  YRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLA 69
           Y+AAL GDW  AK I++++   + + I +  DT L IAAA K   F++E+V +M+  DL 
Sbjct: 333 YQAALKGDWETAKGIFEIHPTAVRVRITRNLDTVLHIAAAAKRTHFVEEVVGLMDPNDLE 392

Query: 70  KPNKHGGTALSMLLHLE----GRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDM----- 120
             N++  TA              VM+K N  + M+R + Q +P+ +AA LGH +M     
Sbjct: 393 LQNENSNTAFCFAAAAGTVRIAEVMVKKNDHLPMIRGNQQMMPLHMAALLGHSEMVWYLY 452

Query: 121 --------------PICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLT 166
                          I    ++  L +VAL +    PKLAT+R G+ ET LH LARK   
Sbjct: 453 NKTNHQDLKDEDWIGILNTCISTDLYEVALAILESHPKLATIRDGNYETALHLLARK--- 509

Query: 167 SSNFINQNQRGIFRRCFN----LGAEDVEVQRL----------------QALKLVERLCG 206
            S F  +++ GI+    N    L    V +  L                + L        
Sbjct: 510 PSAFSGESRIGIWTTFINPRSPLQVSTVVIIFLMVIPSNNFLFNSQFQSKPLNSSNAFGS 569

Query: 207 KVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNL---HISYRR--FESSGA 261
           ++    DS+I+ LI  P  L+F AAK GN  FL  L   YP+L     S  R  F  +  
Sbjct: 570 RLYNYLDSKIADLIRDPYRLVFVAAKLGNTIFLTELLHSYPDLIWRVXSQTRSIFHIAAL 629

Query: 262 HLQTR-----------------------NNILHLAAMLPPQDRLNIVSGAALQMQREF-- 296
           H Q R                       NN+LHL   L     LNI+SGAALQMQRE   
Sbjct: 630 HRQDRIFNLIYEIGSIKDMIMTYRDENGNNMLHLVGKLAHPSELNIISGAALQMQRELLW 689

Query: 297 ---CEKVVQRGFAEAKNREGLTPRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVV 353
               EK++Q  + E KNR+G TP  LFT+EH+DL + GEKWM++TA   M VATLIATVV
Sbjct: 690 FKEVEKLMQPTYREKKNRQGKTPWVLFTEEHRDLMKDGEKWMRETAAQSMLVATLIATVV 749

Query: 354 FVAAFTVPRSNREDTGFPFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYA 413
           F AAFTVP  + + T  P  L          +FA+SD ++L +SS S++ FLSILT RYA
Sbjct: 750 FSAAFTVPGGHSQQTDTPILL---------MVFAVSDGLALFTSSTSILMFLSILTSRYA 800

Query: 414 EEDFLRLLPRKLLLGLATLFISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILF 473
           E+DFL  LP +L+ GL  LF+S+  MMV F+ TFFI+      W+ IL+++ A+ PV LF
Sbjct: 801 EQDFLHSLPSRLMFGLTALFVSIITMMVTFTITFFIVYHHGFAWVPILIALFATGPVSLF 860

Query: 474 IWQHFRLFYDVLRST 488
               + L  DV+ ST
Sbjct: 861 ASLQYPLLADVINST 875

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	564
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.398	0.648	0.334	2.5e-41
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.755	0.742	0.253	2.4e-26
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.386	0.325	0.307	8.3e-24
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.384	0.359	0.299	2.2e-19
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.382	0.345	0.315	5.3e-18
TAIR|locus:2165194	282	AT5G35830 [Arabidopsis thalian	0.209	0.418	0.344	1.7e-10

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
 Identities = 80/239 (33%), Positives = 117/239 (48%)

Query:   264 QTRNNILHLAAMLPPQDRLNIVSGAALQMQREFC-----EKVVQRGFAEAKNREGLTPRA 318
             ++ +N+LHL A LPP +RL +VSGAALQMQRE       +++V R + + KN++      
Sbjct:   101 ESNDNLLHLVARLPPPNRLQVVSGAALQMQREILWYKAVKEIVPRVYIKTKNKKEEVAHD 160

Query:   319 LFTKEHKDLRETGEKWMKDTATSCMXXXXXXXXXXXXXXXXXPRSNR-----EDTGFPFF 373
             LFTKEH +LR+ GEKWMK+TAT+C+                 P  N      +  GFP  
Sbjct:   161 LFTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFP-- 218

Query:   374 LEKFSENFSFKIFXXXXXXXXXXXXXXXXXXXXXLTPRYAEEDFXXXXXXXXXXXXXXXF 433
                F + F F++F                     LT RYAE  F               F
Sbjct:   219 --TFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSRYAEASFQTTLPTKLMLGLLALF 276

Query:   434 ISVAAMMVVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRSTLFRK 492
             +S+ +M++ F+ T  ++  QE  W  IL+  +AS   + F+  HF+L++D LRS    K
Sbjct:   277 VSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVLHFQLWFDTLRSAYLSK 335

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 2.4e-26, P = 2.4e-26
 Identities = 117/462 (25%), Positives = 209/462 (45%)

Query:    38 KRGDTALRIAAAGKYIEFLKELVK-IMEAEDLAKPNKHGGTALSML-LHLEGRVMMKHNR 95
             K G+T L  AAA   IE  + L+  I +  D++  N+   T + +  L+  G  M+++  
Sbjct:   118 KDGNTPLSFAAALGDIETAEMLINMIRDLPDIS--NEKTMTPIHIAALYGHGE-MVQYLF 174

Query:    96 SIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNM-LLPDVALQLCRDRPKLATLRAGDCE 154
             S   ++D N    +++  ++   D+      + + +L  V L     R +LA     +  
Sbjct:   175 SKTSIKDLNDQQYLNLFHTMISADIYGVFADVPLWMLERVDLY----RKELALYP--NSN 228

Query:   155 TPLHALARKNLTSSNFINQNQRGIFRRCFN--LGAEDVEVQRLQALKLVERLCGKVALLS 212
               LH LARK   +S   +++Q  +F++  +  L  +  E+  ++ L ++ R    +  + 
Sbjct:   229 KALHLLARK---TSAISHKSQLNLFQQVASSWLLFDAAELGNVEILVILIRSHLDLLWIV 285

Query:   213 DSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHL 272
             D+  +R +    AL     +  N+  L+       +L  SY+         Q+++ +LHL
Sbjct:   286 DNN-NRTLFHVAALY----RHENIFSLIYELGGIKDLIASYKE-------KQSKDTLLHL 333

Query:   273 AAMLPPQDRLNIVSGAALQMQREFC-----EKVVQRGFAEAKNREGLTPRALFTKEHKDL 327
              A LPP +R  + SGAAL MQ+E       +++V R + E KN +G     +FT++H++L
Sbjct:   334 VARLPPMNRQQVGSGAALHMQKELLWFKAVKEIVPRSYIETKNTKGELAHDIFTEQHENL 393

Query:   328 RETGEKWMKDTATSCMXXXXXXXXXXXXXXXXXPRSNRE--DTGFPFFLEKFSENFSFKI 385
             R+ GE+WMK+TAT+CM                 P  N +  D         F +   F I
Sbjct:   394 RKEGERWMKETATACMLGATLIATVVFAAAITIPGGNDDSGDKANTLGFPNFRKRLLFDI 453

Query:   386 FXXXXXXXXXXXXXXXXXXXXXLTPRYAEEDFXXXXXXXXXXXXXXXFISVAAMMVVFST 445
             F                      T RYAEEDF               FIS+ +M++ F+ 
Sbjct:   454 FTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGLSALFISIISMILAFTF 513

Query:   446 TFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRS 487
             +  ++  ++     +L+S +AS   + F + +F L+++ LRS
Sbjct:   514 SMILIRVEKASLSLVLISCLASLTALTFAYLYFHLWFNTLRS 555

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 8.3e-24, Sum P(3) = 8.3e-24
 Identities = 70/228 (30%), Positives = 100/228 (43%)

Query:   267 NNILHLAAMLPPQDRLNIVSGAALQMQREF-----CEKVVQRGFAEAKNREGLTPRALFT 321
             N +LHLA    P  +L+ V GA LQ+QRE       E++      E  N E  TP  +FT
Sbjct:   432 NGVLHLAGFPSPPSKLSSVVGAPLQLQRELQWFKEVERIAPEIEKERVNTEEQTPIEIFT 491

Query:   322 KEHKDLRETGEKWMKDTATSCMXXXXXXXXXXXXXXXXXPRSNREDT-GFPFFLEKFSEN 380
             KEH+ LR+  EKWMKDTA SC                  P    +++ G PF L     +
Sbjct:   492 KEHQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLR----D 547

Query:   381 FSFKIFXXXXXXXXXXXXXXXXXXXXXLTPRYAEEDFXXXXXXXXXXXXXXXFISVAAMM 440
               F IF                     LT RY+ +DF               F+S+AAM+
Sbjct:   548 RRFIIFIVSDLISCFASCTSVLIFLGILTARYSFDDFLVFLPTKMIAGLSILFVSIAAML 607

Query:   441 VVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRST 488
             + FS+  F ++ +E  WI     + A  P +LF+   + L  +++ ST
Sbjct:   608 IAFSSALFTMMGKEGKWIVAPTILFACLPALLFVLLQYPLLKEMIFST 655

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 2.2e-19, Sum P(3) = 2.2e-19
 Identities = 68/227 (29%), Positives = 100/227 (44%)

Query:   267 NNILHLAAMLPPQDRLNIVSGAALQMQRE---F--CEKVVQRGFAEAKNREGLTPRALFT 321
             NNILH+A  L   D+L+ +SGAAL+MQRE   F   E +V       KN++  TPR +F 
Sbjct:   367 NNILHIAGRLSTPDQLSKISGAALKMQRESQWFKEVESLVSEREVVQKNKDNKTPRQIFE 426

Query:   322 KEHKDLRETGEKWMKDTATSCMXXXXXXXXXXXXXXXXXPRSNREDTGFPFFLEKFSENF 381
               H+ LR+ GE+WMK TAT+C                  P      +G P  L     + 
Sbjct:   427 HYHEHLRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTSGSPLILN----DL 482

Query:   382 SFKIFXXXXXXXXXXXXXXXXXXXXXLTPRYAEEDFXXXXXXXXXXXXXXXFISVAAMMV 441
              F+ F                     LT RY+ +DF               FIS+A+M+V
Sbjct:   483 HFRAFIFTDTLAFFASCISVLIFLSILTSRYSFDDFIVSLPRKMILGQSILFISIASMLV 542

Query:   442 VFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRST 488
              F T+    +  +   +  L   +AS P +LF+   + L  +++ ST
Sbjct:   543 AFITSLSASMRHKPALVYPL-KPLASFPSLLFLMLQYPLLKEMISST 588

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
 Identities = 72/228 (31%), Positives = 95/228 (41%)

Query:   267 NNILHLAAMLPPQDRLNIVSGAALQMQREF-----CEKVVQRGFAEAKNREGLTPRALFT 321
             N++LHLA   PP  +L  V  A LQMQRE       E++V     E  N E LTP  +F 
Sbjct:   390 NSVLHLAGYPPPNYKLATVVSATLQMQRELQWFKEMERIVPAIENERVNTENLTPIEIFR 449

Query:   322 KEHKDLRETGEKWMKDTATSCMXXXXXXXXXXXXXXXXXPRSNREDTGF-PFFLEKFSEN 380
             KEH+ +R   EKWMKDTA SC                  P    +++G  PF      E 
Sbjct:   450 KEHEAMRLEAEKWMKDTAMSCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRH---ER 506

Query:   381 FSFKIFXXXXXXXXXXXXXXXXXXXXXLTPRYAEEDFXXXXXXXXXXXXXXXFISVAAMM 440
               F IF                     LT RYA +DF               F+S+AAM+
Sbjct:   507 I-FVIFIVSDLISCFAACTSVLIFLGILTARYAFDDFLFSLPANMIAGLSTLFVSIAAML 565

Query:   441 VVFSTTFFILLAQETLWIAILVSVIASTPVILFIWQHFRLFYDVLRST 488
             V FS+  F +      WI       A  P +LF+   + L  +++ ST
Sbjct:   566 VAFSSALFTIFNDP--WIVAPTIFFACFPALLFVMIQYPLLKELIFST 611

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165194 AT5G35830 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 42/122 (34%), Positives = 67/122 (54%)

Query:     3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKI 62
             R++ +Q Y+AAL GDW  A  I    +  I   I  + +T L IA A K+  F++ L+  
Sbjct:    85 RAKGVQLYQAALKGDWKAANGIIIEQKYIIYQKITSKSETVLHIAVAAKHEGFVRNLLGS 144

Query:    63 MEAEDLAKPNKHGGTALSMLLH---LE-GRVMMKHNRSIAMVRDHNQTLPIDVAASLGHK 118
             +E+ DLA  N  G TAL        +E  +++++ N+ + M+R   +T PI +AA  GH 
Sbjct:   145 LESNDLALRNVDGNTALCFAAASGVVEIAKMLIEKNKDLPMIRGGGKTTPIHMAALFGHG 204

Query:   119 DM 120
             +M
Sbjct:   205 EM 206


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      564       498   0.00084  119 3  11 22  0.47    33
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  289 KB (2151 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  38.90u 0.15s 39.05t   Elapsed:  00:00:02
  Total cpu time:  38.91u 0.15s 39.06t   Elapsed:  00:00:02
  Start:  Mon May 20 18:46:29 2013   End:  Mon May 20 18:46:31 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	564
pfam13962	114	pfam13962, PGG, Domain of unknown function	2e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-05

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 95.3 bits (238), Expect = 2e-23
 Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 15/123 (12%)

Query: 332 EKWMKDTATSCMFVATLIATVVFVAAFTVPRSNREDT-----GFPFFLEKFSENFSFKIF 386
            +W++ T  S + VATLIATV F A FT P    +D      G P    K      FK F
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRR---FKAF 57

Query: 387 AISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPRKLLLGLATLFISVAAMMVVFSTT 446
            +S+ I+ V+S  +V+  L I+        F R LPR LL  L  L++S+ ++MV F+  
Sbjct: 58  FVSNTIAFVASLVAVILLLYIV------PSFSRRLPR-LLALLTLLWLSLLSLMVAFAAG 110

Query: 447 FFI 449
            + 
Sbjct: 111 SYR 113

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 22/134 (16%)

Query: 35  AIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTAL---SMLLHLE-GRVM 90
           A  + G T L +AA+  ++E +K L++     D+   +  G T L   +   HLE  +++
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLE--NGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 91  MKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRA 150
           ++    +        T P+ +AA  G+ D+      + +LL   A    RD+        
Sbjct: 60  LEKGADVNARDKDGNT-PLHLAARNGNLDV------VKLLLKHGADVNARDK-------- 104

Query: 151 GDCETPLHALARKN 164
            D  TPLH  A+  
Sbjct: 105 -DGRTPLHLAAKNG 117

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 17/117 (14%)

Query: 12  AALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKP 71
           AA NG   V K +  +  G    A    G T L +AA   ++E +K L++  +  D+   
Sbjct: 14  AASNGHLEVVKLL--LENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE--KGADVNAR 69

Query: 72  NKHGGTALSMLLHL---EGRVMM-----KHNRSIAMVRDHNQTLPIDVAASLGHKDM 120
           +K G T     LHL    G + +     KH   +   RD +   P+ +AA  GH ++
Sbjct: 70  DKDGNTP----LHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEV 121

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	564
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.96
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA03095	471	ankyrin-like protein; Provisional	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.94
PHA03100	480	ankyrin repeat protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA02730	672	ankyrin-like protein; Provisional	99.94
PHA02878	477	ankyrin repeat protein; Provisional	99.94
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
PHA02798	489	ankyrin-like protein; Provisional	99.92
PHA02989	494	ankyrin repeat protein; Provisional	99.92
PHA02917	661	ankyrin-like protein; Provisional	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
KOG0508	615	consensus Ankyrin repeat protein [General function	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PF13962	113	PGG: Domain of unknown function	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
PHA02792	631	ankyrin-like protein; Provisional	99.9
KOG0508	615	consensus Ankyrin repeat protein [General function	99.89
PHA02917	661	ankyrin-like protein; Provisional	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.86
PHA02795	437	ankyrin-like protein; Provisional	99.85
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.85
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.83
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.82
PHA02792	631	ankyrin-like protein; Provisional	99.82
PHA02795	437	ankyrin-like protein; Provisional	99.82
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.82
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.81
KOG0514	452	consensus Ankyrin repeat protein [General function	99.78
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.77
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.76
PHA02741	169	hypothetical protein; Provisional	99.74
PHA02736	154	Viral ankyrin protein; Provisional	99.73
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.71
PHA02743	166	Viral ankyrin protein; Provisional	99.71
PHA02741	169	hypothetical protein; Provisional	99.71
KOG0514	452	consensus Ankyrin repeat protein [General function	99.71
PHA02736	154	Viral ankyrin protein; Provisional	99.69
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.69
PHA02743	166	Viral ankyrin protein; Provisional	99.67
PHA02884	300	ankyrin repeat protein; Provisional	99.67
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.65
PHA02884	300	ankyrin repeat protein; Provisional	99.63
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.62
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.6
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.6
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.58
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.53
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.53
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.48
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.43
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.4
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.37
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.25
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.2
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.2
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.19
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.18
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.13
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.05
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.0
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.96
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.94
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.93
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.88
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.82
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.71
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.56
PF13606	30	Ank_3: Ankyrin repeat	98.45
PF13606	30	Ank_3: Ankyrin repeat	98.26
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.26
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.19
KOG0522	560	consensus Ankyrin repeat protein [General function	98.18
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.16
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.11
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.09
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.07
KOG0522	560	consensus Ankyrin repeat protein [General function	97.99
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.89
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.88
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.86
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.83
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.67
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.58
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.57
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.4
KOG0511	516	consensus Ankyrin repeat protein [General function	97.19
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.15
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.12
KOG0521	785	consensus Putative GTPase activating proteins (GAP	96.93
KOG2384	223	consensus Major histocompatibility complex protein	96.83
KOG2384	223	consensus Major histocompatibility complex protein	96.32
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.26
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.44
KOG0511	516	consensus Ankyrin repeat protein [General function	94.73
KOG2505	591	consensus Ankyrin repeat protein [General function	92.77
KOG2505	591	consensus Ankyrin repeat protein [General function	92.19
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	88.14

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-34  Score=249.07  Aligned_cols=206  Identities=14%  Similarity=0.123  Sum_probs=180.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      .+.++.+.+++......|+.+++..|..++.+.|.+|+||||+||..|+.++|++|++. ....++.+|..|+||||+||
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-PNVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhc-CCCCCCCccccCCchhhhhh
Confidence            46789999999999999999999999877777777999999999999999999999985 45668889999999999999


Q ss_pred             Hhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHH
Q 043183           84 HLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLH  158 (564)
Q Consensus        84 ~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh  158 (564)
                       ..|     +.|+.+....++..++.|.||||+|+..|+.+++++|++              + +..+..+|..|.||||
T Consensus        81 -s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle--------------~-ga~i~~kD~~~qtplH  144 (226)
T KOG4412|consen   81 -SNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLE--------------K-GALIRIKDKQGQTPLH  144 (226)
T ss_pred             -hcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHh--------------c-CCCCcccccccCchhH
Confidence             999     788888445578889999999999999999999999863              4 4667999999999999


Q ss_pred             HHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHH
Q 043183          159 ALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGF  238 (564)
Q Consensus       159 ~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~i  238 (564)
                      -||..|+.                                +++++|+.     .++.+|.+|+.|+||||.|...|+.++
T Consensus       145 RAAavGkl--------------------------------kvie~Li~-----~~a~~n~qDk~G~TpL~~al~e~~~d~  187 (226)
T KOG4412|consen  145 RAAAVGKL--------------------------------KVIEYLIS-----QGAPLNTQDKYGFTPLHHALAEGHPDV  187 (226)
T ss_pred             HHHhccch--------------------------------hhHHHHHh-----cCCCCCcccccCccHHHHHHhccCchH
Confidence            99999965                                67777654     347889999999999999988999999


Q ss_pred             HHHHHHhCCCcccccccccchHHHhhcCCchHHHHH
Q 043183          239 LLILTREYPNLHISYRRFESSGAHLQTRNNILHLAA  274 (564)
Q Consensus       239 v~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa  274 (564)
                      ..+|+++|++.....          ++| ||+-.|.
T Consensus       188 a~lLV~~gAd~~~ed----------ke~-t~~~~a~  212 (226)
T KOG4412|consen  188 AVLLVRAGADTDRED----------KEG-TALRIAC  212 (226)
T ss_pred             HHHHHHhccceeecc----------ccC-chHHHHH
Confidence            999999999874433          777 9987765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=3.2e-32  Score=280.63  Aligned_cols=204  Identities=19%  Similarity=0.235  Sum_probs=165.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCC-CCCCcHHHHHHH
Q 043183            6 RLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPN-KHGGTALSMLLH   84 (564)
Q Consensus         6 ~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d-~~G~TpLH~Aa~   84 (564)
                      ...++.|+++|+++.|+.+++.....+ ...|.+|.|+||+||.+++.+++++|+++  +++++..+ .-|.||||+|+ 
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v-~~~D~~g~tlLHWAAiNNrl~v~r~li~~--gadvn~~gG~l~stPLHWAa-  120 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESV-NNPDREGVTLLHWAAINNRLDVARYLISH--GADVNAIGGVLGSTPLHWAA-  120 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCC-CCCCcCCccceeHHHHcCcHHHHHHHHHc--CCCccccCCCCCCCcchHHH-
Confidence            356789999999999999999843333 44688999999999999999999999999  56666666 67899999999 


Q ss_pred             hch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHH
Q 043183           85 LEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHA  159 (564)
Q Consensus        85 ~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~  159 (564)
                      ++|     +.|++++.+ ++.+|.+|.||||+||+.|+.-.|-||+.              ++ .+++.+|.+|+|||||
T Consensus       121 r~G~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~--------------~~-~d~d~~D~~grTpLmw  184 (600)
T KOG0509|consen  121 RNGHISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLS--------------KG-ADIDLRDNNGRTPLMW  184 (600)
T ss_pred             HcCcHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHH--------------hc-ccCCCcCCCCCCHHHH
Confidence            999     788888755 78999999999999999999999999863              44 5558899999999999


Q ss_pred             HHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhh-cCCchHHHHHHHcCCHHH
Q 043183          160 LARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLI-SKPGALIFDAAKQGNVGF  238 (564)
Q Consensus       160 Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~i  238 (564)
                      ||.+|..                                ..+..|+    ..+ +.++.+| .+|+||||+|+..|+.++
T Consensus       185 Aaykg~~--------------------------------~~v~~LL----~f~-a~~~~~d~~~g~TpLHwa~~~gN~~~  227 (600)
T KOG0509|consen  185 AAYKGFA--------------------------------LFVRRLL----KFG-ASLLLTDDNHGNTPLHWAVVGGNLTA  227 (600)
T ss_pred             HHHhccc--------------------------------HHHHHHH----Hhc-ccccccccccCCchHHHHHhcCCcce
Confidence            9999965                                1133332    223 3444555 899999999999999999


Q ss_pred             HHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhc
Q 043183          239 LLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAML  276 (564)
Q Consensus       239 v~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~  276 (564)
                      ++.|++.+.+.... |         .+|.||+.+|.+.
T Consensus       228 v~Ll~~g~~~~d~~-~---------~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  228 VKLLLEGGADLDKT-N---------TNGKTPFDLAQER  255 (600)
T ss_pred             EehhhhcCCccccc-c---------cCCCCHHHHHHHh
Confidence            99555555554222 2         7899999999877

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.2e-31  Score=277.61  Aligned_cols=256  Identities=19%  Similarity=0.173  Sum_probs=177.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      +..+.+|||+|+..|+.++++.|++.+.+ + +..|..|.||||+||..++.|..+.|++.  ++++...|.+|++|+|.
T Consensus       118 n~~~~aplh~A~~~~~~s~L~~Ll~~~~d-v-nl~de~~~TpLh~A~~~~~~E~~k~Li~~--~a~~~K~~~~~~~~iH~  193 (929)
T KOG0510|consen  118 NLNKNAPLHLAADSGNYSCLKLLLDYGAD-V-NLEDENGFTPLHLAARKNKVEAKKELINK--GADPCKSDIDGNFPIHE  193 (929)
T ss_pred             hhhccCchhhccccchHHHHHHHHHhcCC-c-cccccCCCchhhHHHhcChHHHHHHHHhc--CCCCCcccCcCCchHHH
Confidence            34567778888887888888887777643 2 33577778888888888888866777777  56667777788888888


Q ss_pred             HHHhch-----HHHHhcCc----ccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCC
Q 043183           82 LLHLEG-----RVMMKHNR----SIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGD  152 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~----~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~  152 (564)
                      |+ ++|     +.++.+++    ..++.-|..|.||||.|+..|+.++++.+|+...+..+.=....++...+++..|++
T Consensus       194 aa-~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~d  272 (929)
T KOG0510|consen  194 AA-RSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDND  272 (929)
T ss_pred             HH-HhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccccc
Confidence            88 777     45555322    235566777888888888888888888877733222221111122223345667888


Q ss_pred             CCcHHHHHHhCCCCCcccccccccchHHHHh------------hhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhh
Q 043183          153 CETPLHALARKNLTSSNFINQNQRGIFRRCF------------NLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLI  220 (564)
Q Consensus       153 G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~------------~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d  220 (564)
                      |.||||+||+.|+..          .+..++            +....|.++.- ...+.++.|++   ..+....|..|
T Consensus       273 g~tpLH~a~r~G~~~----------svd~Ll~~Ga~I~~kn~d~~spLH~AA~y-g~~ntv~rLL~---~~~~rllne~D  338 (929)
T KOG0510|consen  273 GCTPLHYAARQGGPE----------SVDNLLGFGASINSKNKDEESPLHFAAIY-GRINTVERLLQ---ESDTRLLNESD  338 (929)
T ss_pred             CCchHHHHHHcCChh----------HHHHHHHcCCcccccCCCCCCchHHHHHc-ccHHHHHHHHh---CcCcccccccc
Confidence            888888888888652          222222            22234544432 23455666543   24556788899


Q ss_pred             cCCchHHHHHHHcCCHHHHHHHHHhCCCccc--ccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          221 SKPGALIFDAAKQGNVGFLLILTREYPNLHI--SYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       221 ~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~--~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      -.|.||||+|+++||.++++.||++|+....  +.+         .+|+||||+|++.|+..+++.|
T Consensus       339 ~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D---------~dg~TaLH~Aa~~g~~~av~~L  396 (929)
T KOG0510|consen  339 LHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEAD---------SDGNTALHLAAKYGNTSAVQKL  396 (929)
T ss_pred             ccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccc---------cCCchhhhHHHHhccHHHHHHH
Confidence            9999999999999999999999999998763  112         8999999999999999998876

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.3e-31  Score=278.05  Aligned_cols=240  Identities=15%  Similarity=0.077  Sum_probs=196.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHH
Q 043183            5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLH   84 (564)
Q Consensus         5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~   84 (564)
                      .+++||.|++.|+.++++.|++.+.+.  ...+.+|.||||+|+..|+.++|++|++.  +.+++..+..|.||||.|+ 
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~--n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~~t~L~~A~-   76 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINP--NFEIYDGISPIKLAMKFRDSEAIKLLMKH--GAIPDVKYPDIESELHDAV-   76 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCC--CccCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCccccCCCcccHHHHHH-
Confidence            478999999999999999999987653  33567899999999999999999999998  4567777889999999999 


Q ss_pred             hch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHH
Q 043183           85 LEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHA  159 (564)
Q Consensus        85 ~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~  159 (564)
                      ..|     +.|++.++......+.+|.||||+|+..|+.+++++|++              .+.+ ++.+|.+|.||||+
T Consensus        77 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~--------------~gad-~~~~~~~g~tpLh~  141 (413)
T PHA02875         77 EEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA--------------RGAD-PDIPNTDKFSPLHL  141 (413)
T ss_pred             HCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh--------------CCCC-CCCCCCCCCCHHHH
Confidence            999     888888877767778889999999999999999999863              4444 47789999999999


Q ss_pred             HHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHH
Q 043183          160 LARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFL  239 (564)
Q Consensus       160 Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv  239 (564)
                      |+..|+.                                ++++.|++     .+.+++.+|..|.||||+|+..|+.+++
T Consensus       142 A~~~~~~--------------------------------~~v~~Ll~-----~g~~~~~~d~~g~TpL~~A~~~g~~eiv  184 (413)
T PHA02875        142 AVMMGDI--------------------------------KGIELLID-----HKACLDIEDCCGCTPLIIAMAKGDIAIC  184 (413)
T ss_pred             HHHcCCH--------------------------------HHHHHHHh-----cCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            9999965                                56666654     3456788899999999999999999999


Q ss_pred             HHHHHhCCCcccccccccchHHHhhcC-CchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchh
Q 043183          240 LILTREYPNLHISYRRFESSGAHLQTR-NNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRA  318 (564)
Q Consensus       240 ~~LL~~~~~~~~~~~r~~~i~n~~~~G-~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~d  318 (564)
                      ++|+++|+++....          .+| .||+|+|+..++.+++++|           ++....+......+.++.|+.+
T Consensus       185 ~~Ll~~ga~~n~~~----------~~~~~t~l~~A~~~~~~~iv~~L-----------l~~gad~n~~~~~~~~~~t~l~  243 (413)
T PHA02875        185 KMLLDSGANIDYFG----------KNGCVAALCYAIENNKIDIVRLF-----------IKRGADCNIMFMIEGEECTILD  243 (413)
T ss_pred             HHHHhCCCCCCcCC----------CCCCchHHHHHHHcCCHHHHHHH-----------HHCCcCcchHhhcCCCchHHHH
Confidence            99999999984332          444 5899999999999988876           1222222233344667888888


Q ss_pred             hhHH
Q 043183          319 LFTK  322 (564)
Q Consensus       319 l~~~  322 (564)
                      ++..
T Consensus       244 ~~~~  247 (413)
T PHA02875        244 MICN  247 (413)
T ss_pred             HHHh
Confidence            7544

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=1e-30  Score=277.14  Aligned_cols=238  Identities=11%  Similarity=0.022  Sum_probs=185.7

Q ss_pred             CCcHHHHHHH--cCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183            5 RRLQTYRAAL--NGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML   82 (564)
Q Consensus         5 g~t~Lh~Aa~--~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A   82 (564)
                      +.++||.++.  .++.++|+.|++.+.+ + ...|.+|.||||+||..|+.++|++|+++  +++++.+|..|.||||+|
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gad-v-n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~--GAdin~~d~~g~TpLh~A  112 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYS-P-NETDDDGNYPLHIASKINNNRIVAMLLTH--GADPNACDKQHKTPLYYL  112 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCC-C-CccCCCCCCHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHH
Confidence            3689998764  4478899999998876 3 44688999999999999999999999998  678889999999999999


Q ss_pred             HHhch-------HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHc---------------------ccCCHHH
Q 043183           83 LHLEG-------RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSM---------------------NMLLPDV  134 (564)
Q Consensus        83 a~~~G-------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~---------------------~~~~~~i  134 (564)
                      + ..+       +.|++.+.++....|.+|.|||| ||..|+.+++++|++.                     ..+..++
T Consensus       113 ~-~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~  190 (446)
T PHA02946        113 S-GTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKAST  190 (446)
T ss_pred             H-HcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHH
Confidence            8 765       67888887765567889999998 6667899999999871                     2334578


Q ss_pred             HHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChh
Q 043183          135 ALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDS  214 (564)
Q Consensus       135 ~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~  214 (564)
                      ++.|++.+.+. +.+|.+|+||||+|+..+..                      +        .++++.++      .+.
T Consensus       191 v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~----------------------~--------~~iv~lLl------~ga  233 (446)
T PHA02946        191 ISWMMKLGISP-SKPDHDGNTPLHIVCSKTVK----------------------N--------VDIINLLL------PST  233 (446)
T ss_pred             HHHHHHcCCCC-cccCCCCCCHHHHHHHcCCC----------------------c--------HHHHHHHH------cCC
Confidence            88898887766 78899999999999998733                      1        24454442      246


Q ss_pred             hHhhhhcCCchHHHHHHHcCC-HHHHHHHHHhCCCccccc------ccccchHHHh-----hcCCchHHHHHhcCCCCcc
Q 043183          215 EISRLISKPGALIFDAAKQGN-VGFLLILTREYPNLHISY------RRFESSGAHL-----QTRNNILHLAAMLPPQDRL  282 (564)
Q Consensus       215 ~~~~~d~~G~TpLh~Aa~~g~-~~iv~~LL~~~~~~~~~~------~r~~~i~n~~-----~~G~TpLhlAa~~~~~~~~  282 (564)
                      +++.+|..|.||||+|++.++ .+++++|++++.+.....      .....+.+++     ..|+||||+|++.|+.+++
T Consensus       234 din~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eiv  313 (446)
T PHA02946        234 DVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCV  313 (446)
T ss_pred             CCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHH
Confidence            889999999999999999988 589999999886542211      0001111223     3577999999999999999


Q ss_pred             ccc
Q 043183          283 NIV  285 (564)
Q Consensus       283 ~~l  285 (564)
                      ++|
T Consensus       314 k~L  316 (446)
T PHA02946        314 KYL  316 (446)
T ss_pred             HHH
Confidence            887

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=281.08  Aligned_cols=232  Identities=15%  Similarity=0.068  Sum_probs=194.5

Q ss_pred             CCCCCcHHHHHHHcC---CHHHHHHHHHhCccccccccCCCCChHHHHHHhcC-CHHHHHHHHHcCCcccccCCCCCCCc
Q 043183            2 TRSRRLQTYRAALNG---DWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGK-YIEFLKELVKIMEAEDLAKPNKHGGT   77 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G---~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g-~~~iv~~Ll~~~~~~~l~~~d~~G~T   77 (564)
                      +..|.||||.|+..|   +.++++.|++.+.+.  ...+..|.||||+|+..| +.+++++|++.  +.+++.+|..|.|
T Consensus        44 ~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi--n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~--ga~in~~~~~g~t  119 (471)
T PHA03095         44 GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV--NAPERCGFTPLHLYLYNATTLDVIKLLIKA--GADVNAKDKVGRT  119 (471)
T ss_pred             CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCcHHHHHHHHHc--CCCCCCCCCCCCC
Confidence            346899999999999   999999999988763  445779999999999999 59999999998  6789999999999


Q ss_pred             HHHHHHHhch-------HHHHhcCcccccccCCCCCcHHHHHHHcC--CCchHHHHHHc---------------------
Q 043183           78 ALSMLLHLEG-------RVMMKHNRSIAMVRDHNQTLPIDVAASLG--HKDMPICMVSM---------------------  127 (564)
Q Consensus        78 pLH~Aa~~~G-------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g--~~~iv~~Ll~~---------------------  127 (564)
                      |||+|+ ..+       +.|++.+.+ ++.+|..|.||||+|+..+  +.+++++|++.                     
T Consensus       120 pLh~a~-~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~  197 (471)
T PHA03095        120 PLHVYL-SGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQS  197 (471)
T ss_pred             HHHHHh-hCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHH
Confidence            999999 654       778888765 5788999999999999876  56899999871                     


Q ss_pred             ccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHh
Q 043183          128 NMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGK  207 (564)
Q Consensus       128 ~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~  207 (564)
                      ..+..++++.|++.+.+. +.+|..|+||||+|+..|+.                              ...++..++  
T Consensus       198 ~~~~~~i~~~Ll~~g~~~-~~~d~~g~tpLh~Aa~~~~~------------------------------~~~~v~~ll--  244 (471)
T PHA03095        198 FKPRARIVRELIRAGCDP-AATDMLGNTPLHSMATGSSC------------------------------KRSLVLPLL--  244 (471)
T ss_pred             CCCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCc------------------------------hHHHHHHHH--
Confidence            235567888888887665 78899999999999998854                              113344333  


Q ss_pred             hccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          208 VALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       208 ~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                         ..+.+++.+|..|+||||+|+..|+.+++++|++.|+++....          .+|+||||+|+..|+.++++.+
T Consensus       245 ---~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~----------~~g~tpl~~A~~~~~~~~v~~L  309 (471)
T PHA03095        245 ---IAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVS----------SDGNTPLSLMVRNNNGRAVRAA  309 (471)
T ss_pred             ---HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC----------CCCCCHHHHHHHhCCHHHHHHH
Confidence               3466788999999999999999999999999999999984333          8999999999999999888766

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.8e-30  Score=275.10  Aligned_cols=222  Identities=15%  Similarity=0.095  Sum_probs=178.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCC------------------
Q 043183            3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIME------------------   64 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~------------------   64 (564)
                      ..|.||||.|++.|+.++|+.|++.+.+.  ...+..|.||||.|+..|+.+++++|++.+.                  
T Consensus        33 ~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~--n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~l  110 (434)
T PHA02874         33 DETTTPLIDAIRSGDAKIVELFIKHGADI--NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTI  110 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHH
Confidence            46889999999999999999999987763  3457789999999999999999999998742                  


Q ss_pred             ---cccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH----------
Q 043183           65 ---AEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS----------  126 (564)
Q Consensus        65 ---~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~----------  126 (564)
                         +.+++.+|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++          
T Consensus       111 l~~g~d~n~~~~~g~T~Lh~A~-~~~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~  188 (434)
T PHA02874        111 LDCGIDVNIKDAELKTFLHYAI-KKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN  188 (434)
T ss_pred             HHCcCCCCCCCCCCccHHHHHH-HCCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence               2346778889999999999 888     778887755 57788999999999999999999999987          


Q ss_pred             ---------cccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhH
Q 043183          127 ---------MNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQA  197 (564)
Q Consensus       127 ---------~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~  197 (564)
                               +..++.++++.|++.+++. ..++..|.||||.|+..+.                                
T Consensus       189 ~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~--------------------------------  235 (434)
T PHA02874        189 NGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNR--------------------------------  235 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHCCh--------------------------------
Confidence                     3456667777777776654 5566777777777776652                                


Q ss_pred             HHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcC-CHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhc
Q 043183          198 LKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQG-NVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAML  276 (564)
Q Consensus       198 ~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g-~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~  276 (564)
                       +.+..+.      .+.+++.+|..|.||||+|+..+ +.+++++|+++++++....          ..|+||||+|++.
T Consensus       236 -~~i~~Ll------~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d----------~~g~TpL~~A~~~  298 (434)
T PHA02874        236 -SAIELLI------NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKD----------NKGENPIDTAFKY  298 (434)
T ss_pred             -HHHHHHH------cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCC----------CCCCCHHHHHHHh
Confidence             2333332      34567889999999999999876 8999999999999984443          8999999999988


Q ss_pred             CC
Q 043183          277 PP  278 (564)
Q Consensus       277 ~~  278 (564)
                      ++
T Consensus       299 ~~  300 (434)
T PHA02874        299 IN  300 (434)
T ss_pred             CC
Confidence            73

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.6e-29  Score=269.26  Aligned_cols=189  Identities=12%  Similarity=0.110  Sum_probs=150.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhc
Q 043183            7 LQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLE   86 (564)
Q Consensus         7 t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~   86 (564)
                      ..|+.|+..|+.+.++.|++.++..+ ...+.+|.||||.|++.|+.++|++|++.  +.+++..+..|.||||.|+ ..
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~-n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~--Ga~~n~~~~~~~t~L~~A~-~~   78 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCI-NISVDETTTPLIDAIRSGDAKIVELFIKH--GADINHINTKIPHPLLTAI-KI   78 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH-Hc
Confidence            46899999999999999999877654 34577899999999999999999999998  6678889999999999999 99


Q ss_pred             h-----HHHHhcCcc----------------------cccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHH
Q 043183           87 G-----RVMMKHNRS----------------------IAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLC  139 (564)
Q Consensus        87 G-----~~Ll~~~~~----------------------~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll  139 (564)
                      |     +.|++.+.+                      .++.+|..|.||||+|+..|+.+++++|++             
T Consensus        79 ~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~-------------  145 (434)
T PHA02874         79 GAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE-------------  145 (434)
T ss_pred             CCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHh-------------
Confidence            8     677766532                      245678899999999999999999999864             


Q ss_pred             HcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhh
Q 043183          140 RDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRL  219 (564)
Q Consensus       140 ~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~  219 (564)
                       .+.+. +.+|.+|.||||+|+..|+.                                ++++.|++     .+.+++..
T Consensus       146 -~gad~-n~~d~~g~tpLh~A~~~~~~--------------------------------~iv~~Ll~-----~g~~~n~~  186 (434)
T PHA02874        146 -YGADV-NIEDDNGCYPIHIAIKHNFF--------------------------------DIIKLLLE-----KGAYANVK  186 (434)
T ss_pred             -CCCCC-CCcCCCCCCHHHHHHHCCcH--------------------------------HHHHHHHH-----CCCCCCCC
Confidence             44333 66778888888888887754                                45555543     34455667


Q ss_pred             hcCCchHHHHHHHcCCHHHHHHHHHhCCCccc
Q 043183          220 ISKPGALIFDAAKQGNVGFLLILTREYPNLHI  251 (564)
Q Consensus       220 d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~  251 (564)
                      |..|.||||+|+..|+.+++++|++.++++..
T Consensus       187 ~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~  218 (434)
T PHA02874        187 DNNGESPLHNAAEYGDYACIKLLIDHGNHIMN  218 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcC
Confidence            77788888888888888888888887777643

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.3e-29  Score=251.26  Aligned_cols=205  Identities=15%  Similarity=0.068  Sum_probs=167.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |.+|+||||.|+..|+.++++.|++.+...  .  ..+|.||||+|+..|+.++|+.|++.  +.+++.+|..|+||||+
T Consensus        27 D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~--n--~~d~~TpLh~Aa~~g~~eiV~lLL~~--Gadvn~~d~~G~TpLh~  100 (284)
T PHA02791         27 DVHGHSALYYAIADNNVRLVCTLLNAGALK--N--LLENEFPLHQAATLEDTKIVKILLFS--GMDDSQFDDKGNTALYY  100 (284)
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCcCCC--c--CCCCCCHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence            568999999999999999999999987642  1  13579999999999999999999988  66788899999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCC-cHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccC-CCCC
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQT-LPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRA-GDCE  154 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~-TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d-~~G~  154 (564)
                      |+ ..|     +.|++.++++ +.++..|+ ||||+|+..|+.+++++|++              ++++.   .| ..|.
T Consensus       101 Aa-~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~--------------~~~~~---~d~~~g~  161 (284)
T PHA02791        101 AV-DSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLS--------------EIPST---FDLAILL  161 (284)
T ss_pred             HH-HcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHh--------------cCCcc---cccccCc
Confidence            99 999     8888888764 56777774 99999999999999999864              44432   23 3589


Q ss_pred             cHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchH-HHHHHHc
Q 043183          155 TPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGAL-IFDAAKQ  233 (564)
Q Consensus       155 TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~Tp-Lh~Aa~~  233 (564)
                      ||||+|+..|+.                                ++++.|++     .+++++.+|..|.|| ||+|+.+
T Consensus       162 TpLh~Aa~~g~~--------------------------------eiv~lLL~-----~gAd~n~~d~~g~t~~L~~Aa~~  204 (284)
T PHA02791        162 SCIHITIKNGHV--------------------------------DMMILLLD-----YMTSTNTNNSLLFIPDIKLAIDN  204 (284)
T ss_pred             cHHHHHHHcCCH--------------------------------HHHHHHHH-----CCCCCCcccCCCCChHHHHHHHc
Confidence            999999999965                                56666644     355778889999987 9999999


Q ss_pred             CCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          234 GNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       234 g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      |+.+++++|+++|+++...           +.+.|||      ++.|++++|
T Consensus       205 ~~~e~v~lLl~~Ga~in~~-----------~~~~~~l------~~~e~~~~l  239 (284)
T PHA02791        205 KDLEMLQALFKYDINIYSV-----------NLENVLL------DDAEIAKMI  239 (284)
T ss_pred             CCHHHHHHHHHCCCCCccC-----------cccCccC------CCHHHHHHH
Confidence            9999999999999998443           3344666      555666665

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.8e-30  Score=225.74  Aligned_cols=206  Identities=16%  Similarity=0.114  Sum_probs=166.5

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCcccccCCCC-CCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHH
Q 043183           40 GDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNK-HGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAA  113 (564)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~-~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa  113 (564)
                      +.++.|.+|+.....-|+.+++. .+..++.+|. +|+||||+|| +.|     ..|+..-...++.+|..||||||.||
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s-~~kSL~~r~dqD~Rt~LHwa~-S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQS-DPKSLNARDDQDGRTPLHWAC-SFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhc-ChhhhhccccccCCceeeeee-ecCchhHHHHHHhcCCCCCCCccccCCchhhhhh
Confidence            56889999999999999999988 3556777777 9999999999 999     66665444446777999999999999


Q ss_pred             HcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHH
Q 043183          114 SLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQ  193 (564)
Q Consensus       114 ~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~  193 (564)
                      ..|+.++|+.|+.              +....++..++.|.||||||+.+|..                           
T Consensus        81 s~g~~evVk~Ll~--------------r~~advna~tn~G~T~LHyAagK~r~---------------------------  119 (226)
T KOG4412|consen   81 SNGNDEVVKELLN--------------RSGADVNATTNGGQTCLHYAAGKGRL---------------------------  119 (226)
T ss_pred             hcCcHHHHHHHhc--------------CCCCCcceecCCCcceehhhhcCChh---------------------------
Confidence            9999999998853              63455588999999999999999965                           


Q ss_pred             HHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHH
Q 043183          194 RLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLA  273 (564)
Q Consensus       194 ~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlA  273 (564)
                           +|...|++     +++.++.+|..|+||||-||..|..+++++|+..++.+..+.          +.|+||||+|
T Consensus       120 -----eIaqlLle-----~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qD----------k~G~TpL~~a  179 (226)
T KOG4412|consen  120 -----EIAQLLLE-----KGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQD----------KYGFTPLHHA  179 (226)
T ss_pred             -----hHHHHHHh-----cCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCccc----------ccCccHHHHH
Confidence                 67776655     557889999999999999999999999999999998875554          9999999999


Q ss_pred             HhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHHH
Q 043183          274 AMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTKE  323 (564)
Q Consensus       274 a~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~~  323 (564)
                      ..-|+++..-+|           |+   ........|++| |+..+...+
T Consensus       180 l~e~~~d~a~lL-----------V~---~gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  180 LAEGHPDVAVLL-----------VR---AGADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             HhccCchHHHHH-----------HH---hccceeeccccC-chHHHHHHH
Confidence            767776654333           22   234566778888 887765443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.5e-29  Score=281.31  Aligned_cols=254  Identities=15%  Similarity=0.095  Sum_probs=172.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCC-----------------
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIME-----------------   64 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~-----------------   64 (564)
                      |..|.||||.||+.|+.++|+.|++.+.+.  ...+.+|.||||+|+..|+.++++.|++...                 
T Consensus       175 d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~--n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~  252 (682)
T PHA02876        175 DIYCITPIHYAAERGNAKMVNLLLSYGADV--NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNED  252 (682)
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCc--CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCC
Confidence            456889999999999999999999887653  3357788899999999988888888776531                 


Q ss_pred             ----------cccccCCCCCCCcHHHHHHHhch------HHHHhcCcccccccCCCCCcHHHHHHHcC-CCchHHHHHHc
Q 043183           65 ----------AEDLAKPNKHGGTALSMLLHLEG------RVMMKHNRSIAMVRDHNQTLPIDVAASLG-HKDMPICMVSM  127 (564)
Q Consensus        65 ----------~~~l~~~d~~G~TpLH~Aa~~~G------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g-~~~iv~~Ll~~  127 (564)
                                +.+++..|..|.||||+|+ ..|      +.|++.+.+ ++.+|.+|.||||+|+..| +.+++++|+..
T Consensus       253 ~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa-~~~~~~~iv~lLl~~gad-in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~  330 (682)
T PHA02876        253 LETSLLLYDAGFSVNSIDDCKNTPLHHAS-QAPSLSRLVPKLLERGAD-VNAKNIKGETPLYLMAKNGYDTENIRTLIML  330 (682)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHH-hCCCHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHc
Confidence                      2245667778899999999 777      555666543 5778888999999999888 47788887751


Q ss_pred             --------------------ccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcC
Q 043183          128 --------------------NMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGA  187 (564)
Q Consensus       128 --------------------~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~  187 (564)
                                          ..+..++++.|++.+.+. +.+|..|+||||+|+..|+.                     
T Consensus       331 gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~~~~~---------------------  388 (682)
T PHA02876        331 GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAVRNNV---------------------  388 (682)
T ss_pred             CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHHcCCH---------------------
Confidence                                123455555555554443 55666666666666666643                     


Q ss_pred             CcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCC-HHHHHHHHHhCCCcccccccccchHHHhhcC
Q 043183          188 EDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGN-VGFLLILTREYPNLHISYRRFESSGAHLQTR  266 (564)
Q Consensus       188 ~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~-~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G  266 (564)
                                 ++++.|++     .+.+++..+..|.||||+|+..++ .++++.|++.|+++....          .+|
T Consensus       389 -----------~iv~~Ll~-----~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d----------~~G  442 (682)
T PHA02876        389 -----------VIINTLLD-----YGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKN----------KDL  442 (682)
T ss_pred             -----------HHHHHHHH-----CCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCC----------CCC
Confidence                       44444432     334555566666677776665544 345666666666653222          788


Q ss_pred             CchHHHHHhcC-CCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhH
Q 043183          267 NNILHLAAMLP-PQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFT  321 (564)
Q Consensus       267 ~TpLhlAa~~~-~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~  321 (564)
                      +||||+|+..+ +.+++++|           ++   .....+.+|..|.||..+..
T Consensus       443 ~TpLh~Aa~~~~~~~iv~lL-----------l~---~Gad~n~~d~~g~tpl~~a~  484 (682)
T PHA02876        443 STPLHYACKKNCKLDVIEML-----------LD---NGADVNAINIQNQYPLLIAL  484 (682)
T ss_pred             ChHHHHHHHhCCcHHHHHHH-----------HH---CCCCCCCCCCCCCCHHHHHH
Confidence            88888888766 44666655           11   23345667889999987654

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.4e-29  Score=284.36  Aligned_cols=285  Identities=10%  Similarity=0.002  Sum_probs=194.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHH---------------------------------
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAA---------------------------------   48 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa---------------------------------   48 (564)
                      ++.++||||+|+..|+.|+|+.|++++|... ...|..|.||||+|+                                 
T Consensus        38 ~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~-~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  116 (682)
T PHA02876         38 ESIPFTAIHQALQLRQIDIVEEIIQQNPELI-YITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHK  116 (682)
T ss_pred             ccccchHHHHHHHHHhhhHHHHHHHhCcccc-hhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHH
Confidence            3458999999999999999999999999854 456889999999766                                 


Q ss_pred             -------------------------------------hcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch----
Q 043183           49 -------------------------------------AGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG----   87 (564)
Q Consensus        49 -------------------------------------~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G----   87 (564)
                                                           ..|+.+++++|++.  +.+++.+|..|.||||+|| ..|    
T Consensus       117 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~--Gadvn~~d~~G~TpLh~Aa-~~G~~~i  193 (682)
T PHA02876        117 LDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEG--GADVNAKDIYCITPIHYAA-ERGNAKM  193 (682)
T ss_pred             HHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhC--CCCCCCCCCCCCCHHHHHH-HCCCHHH
Confidence                                                 55788999999988  6788999999999999999 999    


Q ss_pred             -HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH---------------cccCCHHHHHHHHHcCCccccccCC
Q 043183           88 -RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS---------------MNMLLPDVALQLCRDRPKLATLRAG  151 (564)
Q Consensus        88 -~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~---------------~~~~~~~i~~~Ll~~~~~~~~~~d~  151 (564)
                       +.|++.+.+ ++..+.+|.||||+|+..|+.+++++|++               +..++.+.++.|++.+.+. +..|.
T Consensus       194 v~~LL~~Gad-~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~v-n~~d~  271 (682)
T PHA02876        194 VNLLLSYGAD-VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSV-NSIDD  271 (682)
T ss_pred             HHHHHHCCCC-cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC
Confidence             888888865 47788899999999999999999999986               3456778888888877665 67888


Q ss_pred             CCCcHHHHHHhCCCCC---cccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHH
Q 043183          152 DCETPLHALARKNLTS---SNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIF  228 (564)
Q Consensus       152 ~G~TpLh~Aa~~g~~~---~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh  228 (564)
                      .|+||||+|+..++..   ......+.....+...+.+..|.++.+....++++.|+.     .+.+++..|..|.||||
T Consensus       272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~-----~gadin~~d~~g~TpLh  346 (682)
T PHA02876        272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIM-----LGADVNAADRLYITPLH  346 (682)
T ss_pred             CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHH-----cCCCCCCcccCCCcHHH
Confidence            9999999999988531   000000000000000111222333322212233333322     23445555566666666


Q ss_pred             HHHHc-CCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHH
Q 043183          229 DAAKQ-GNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAE  307 (564)
Q Consensus       229 ~Aa~~-g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~  307 (564)
                      +|+.. ++.++++.|++.++++....          ..|+||||+|+..|+.++++.|           ++   .....+
T Consensus       347 ~A~~~~~~~~iv~lLl~~gadin~~d----------~~G~TpLh~Aa~~~~~~iv~~L-----------l~---~gad~~  402 (682)
T PHA02876        347 QASTLDRNKDIVITLLELGANVNARD----------YCDKTPIHYAAVRNNVVIINTL-----------LD---YGADIE  402 (682)
T ss_pred             HHHHhCCcHHHHHHHHHcCCCCccCC----------CCCCCHHHHHHHcCCHHHHHHH-----------HH---CCCCcc
Confidence            66553 34555666666655552222          6677777777777776666554           11   223345


Q ss_pred             hhccCCCCchhhhH
Q 043183          308 AKNREGLTPRALFT  321 (564)
Q Consensus       308 ~~n~~g~t~~dl~~  321 (564)
                      ..+.+|.||..+..
T Consensus       403 ~~~~~g~T~Lh~A~  416 (682)
T PHA02876        403 ALSQKIGTALHFAL  416 (682)
T ss_pred             ccCCCCCchHHHHH
Confidence            56677888877653

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=5.9e-29  Score=246.51  Aligned_cols=197  Identities=12%  Similarity=0.010  Sum_probs=160.7

Q ss_pred             cCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HH
Q 043183           15 NGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RV   89 (564)
Q Consensus        15 ~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~   89 (564)
                      .++.+.++.|++.+..    ..|.+|.||||+|+..|+.++++.|++.+  .+.+..  +|.||||+|+ ..|     +.
T Consensus         9 ~~~~~~~~~Lis~~a~----~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~g--a~~n~~--d~~TpLh~Aa-~~g~~eiV~l   79 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF----KADVHGHSALYYAIADNNVRLVCTLLNAG--ALKNLL--ENEFPLHQAA-TLEDTKIVKI   79 (284)
T ss_pred             cCHHHHHHHHHhCCCC----CCCCCCCcHHHHHHHcCCHHHHHHHHHCc--CCCcCC--CCCCHHHHHH-HCCCHHHHHH
Confidence            4688999999987653    35889999999999999999999999984  455544  4789999999 998     77


Q ss_pred             HHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCC-cHHHHHHhCCCCCc
Q 043183           90 MMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCE-TPLHALARKNLTSS  168 (564)
Q Consensus        90 Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~-TpLh~Aa~~g~~~~  168 (564)
                      |++.+.+ ++.+|..|+||||+|+..|+.+++++|++              .++++ +.++..|+ ||||+|+..|+.  
T Consensus        80 LL~~Gad-vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~--------------~gadi-n~~~~~g~~TpL~~Aa~~g~~--  141 (284)
T PHA02791         80 LLFSGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFVK--------------KNWRL-MFYGKTGWKTSFYHAVMLNDV--  141 (284)
T ss_pred             HHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------CCCCc-CccCCCCCcHHHHHHHHcCCH--
Confidence            7877654 57789999999999999999999999853              55554 56777774 899999999965  


Q ss_pred             ccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhh-cCCchHHHHHHHcCCHHHHHHHHHhCC
Q 043183          169 NFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLI-SKPGALIFDAAKQGNVGFLLILTREYP  247 (564)
Q Consensus       169 ~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~iv~~LL~~~~  247 (564)
                                                    ++++.|++.    .+..   .| ..|.||||+|+++|+.+++++|+++++
T Consensus       142 ------------------------------eivk~LL~~----~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gA  184 (284)
T PHA02791        142 ------------------------------SIVSYFLSE----IPST---FDLAILLSCIHITIKNGHVDMMILLLDYMT  184 (284)
T ss_pred             ------------------------------HHHHHHHhc----CCcc---cccccCccHHHHHHHcCCHHHHHHHHHCCC
Confidence                                          566666543    2211   23 358999999999999999999999999


Q ss_pred             CcccccccccchHHHhhcCCch-HHHHHhcCCCCccccc
Q 043183          248 NLHISYRRFESSGAHLQTRNNI-LHLAAMLPPQDRLNIV  285 (564)
Q Consensus       248 ~~~~~~~r~~~i~n~~~~G~Tp-LhlAa~~~~~~~~~~l  285 (564)
                      ++....          ..|+|| ||+|+..|+.+++++|
T Consensus       185 d~n~~d----------~~g~t~~L~~Aa~~~~~e~v~lL  213 (284)
T PHA02791        185 STNTNN----------SLLFIPDIKLAIDNKDLEMLQAL  213 (284)
T ss_pred             CCCccc----------CCCCChHHHHHHHcCCHHHHHHH
Confidence            874433          778887 9999999999998887

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.6e-29  Score=268.32  Aligned_cols=247  Identities=13%  Similarity=0.097  Sum_probs=179.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHH-----HHhcCCHHHHHHHHHcCCcccccCCCCCCC
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRI-----AAAGKYIEFLKELVKIMEAEDLAKPNKHGG   76 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~-----Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~   76 (564)
                      +..+.||||.|+..|+.++|+.|++.+.+.  ...+..|.||||+     |+..|+.++++.|++.  +.+++..|..|.
T Consensus        32 ~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~--~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~--ga~i~~~d~~g~  107 (480)
T PHA03100         32 YKKPVLPLYLAKEARNIDVVKILLDNGADI--NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY--GANVNAPDNNGI  107 (480)
T ss_pred             hcccchhhhhhhccCCHHHHHHHHHcCCCC--CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC--CCCCCCCCCCCC
Confidence            356899999999999999999999987653  3457788999999     9999999999999998  567788999999


Q ss_pred             cHHHHHHHh--ch-----HHHHhcCcccccccCCCCCcHHHHHHHcC--CCchHHHHHHcccCCHHHHHHHHHcCCcccc
Q 043183           77 TALSMLLHL--EG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLG--HKDMPICMVSMNMLLPDVALQLCRDRPKLAT  147 (564)
Q Consensus        77 TpLH~Aa~~--~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g--~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~  147 (564)
                      ||||+|+ .  .|     +.|++.+.+ ++..|..|.||||+|+..|  +.+++++|++              .+.+. +
T Consensus       108 tpL~~A~-~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~--------------~g~di-n  170 (480)
T PHA03100        108 TPLLYAI-SKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKLLID--------------KGVDI-N  170 (480)
T ss_pred             chhhHHH-hcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHHHHH--------------CCCCc-c
Confidence            9999999 4  22     788887755 5778899999999999999  8999998875              33322 4


Q ss_pred             ccCCCCCcHHHHHHhCCCCC-----cccccc----cccchHHHHhhhcCCcHHHHHH-hHHHHHHHHHHhhccCChhhHh
Q 043183          148 LRAGDCETPLHALARKNLTS-----SNFINQ----NQRGIFRRCFNLGAEDVEVQRL-QALKLVERLCGKVALLSDSEIS  217 (564)
Q Consensus       148 ~~d~~G~TpLh~Aa~~g~~~-----~~f~~~----~~~~~~~~~~~~~~~h~~v~~~-~~~~lv~~l~~~~l~~~~~~~~  217 (564)
                      .+|.+|.||||+|+..|+.+     ......    ...+.. ........|.++... ...++++.|++     .+.+++
T Consensus       171 ~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~iv~~Ll~-----~g~din  244 (480)
T PHA03100        171 AKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLL-FTIFETPLHIAACYNEITLEVVNYLLS-----YGVPIN  244 (480)
T ss_pred             cccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCc-HHHHHhHHHHHHHhCcCcHHHHHHHHH-----cCCCCC
Confidence            44555555555555555432     000000    000000 000011111111110 01356666654     456788


Q ss_pred             hhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          218 RLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       218 ~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      .+|..|.||||+|+..|+.+++++|++.|+++....          ..|+||||+|++.++.++++.|
T Consensus       245 ~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d----------~~g~tpl~~A~~~~~~~iv~~L  302 (480)
T PHA03100        245 IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVN----------KYGDTPLHIAILNNNKEIFKLL  302 (480)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC----------CCCCcHHHHHHHhCCHHHHHHH
Confidence            899999999999999999999999999999874333          8999999999999999988876

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=4.8e-28  Score=253.92  Aligned_cols=222  Identities=15%  Similarity=0.124  Sum_probs=168.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcC---CcccccCCCCCCCcH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIM---EAEDLAKPNKHGGTA   78 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~---~~~~l~~~d~~G~Tp   78 (564)
                      |..|.||||.||..++.|..+.|++.+.+.  .+.|.+|.+|+|.|++.|..++.+..+...   ....++.-|..|.||
T Consensus       151 de~~~TpLh~A~~~~~~E~~k~Li~~~a~~--~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~p  228 (929)
T KOG0510|consen  151 DENGFTPLHLAARKNKVEAKKELINKGADP--CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATP  228 (929)
T ss_pred             ccCCCchhhHHHhcChHHHHHHHHhcCCCC--CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcc
Confidence            346788888888888888778888877653  556788888888888888888888888731   234477778888888


Q ss_pred             HHHHHHhch-----HHHHhcC--------------cccccccCCCCCcHHHHHHHcCCCchHHHHHH-------------
Q 043183           79 LSMLLHLEG-----RVMMKHN--------------RSIAMVRDHNQTLPIDVAASLGHKDMPICMVS-------------  126 (564)
Q Consensus        79 LH~Aa~~~G-----~~Ll~~~--------------~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-------------  126 (564)
                      ||.|+ ..|     +..++.+              ..+++..|++|.||||+||+.|+.++++.|+.             
T Consensus       229 LhlAv-e~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~  307 (929)
T KOG0510|consen  229 LHLAV-EGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEE  307 (929)
T ss_pred             hhhhh-hcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCC
Confidence            88888 777     3344332              23455678888888888888888888888877             


Q ss_pred             ------cccCCHHHHHHHHH-cCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHH
Q 043183          127 ------MNMLLPDVALQLCR-DRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALK  199 (564)
Q Consensus       127 ------~~~~~~~i~~~Ll~-~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~  199 (564)
                            +..|.++.++.||+ ++..+.+..|..|+||||.|++.|+.                                +
T Consensus       308 spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~--------------------------------~  355 (929)
T KOG0510|consen  308 SPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHD--------------------------------R  355 (929)
T ss_pred             CchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHH--------------------------------H
Confidence                  45566777777887 66677788899999999999988843                                5


Q ss_pred             HHHHHHHhhccCChhhHh--hhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHH
Q 043183          200 LVERLCGKVALLSDSEIS--RLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHL  272 (564)
Q Consensus       200 lv~~l~~~~l~~~~~~~~--~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhl  272 (564)
                      +++.|+++    +....+  +.|++|+||||.||+.|+..+|++|+.+|+++....          ++|.|++|+
T Consensus       356 v~qlLl~~----GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n----------~~g~SA~~~  416 (929)
T KOG0510|consen  356 VVQLLLNK----GALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKN----------KKGKSAFDT  416 (929)
T ss_pred             HHHHHHhc----ChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecc----------ccccccccc
Confidence            56655442    222222  569999999999999999999999999999984433          888999886

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=8.4e-29  Score=270.76  Aligned_cols=247  Identities=9%  Similarity=-0.040  Sum_probs=175.7

Q ss_pred             CCCCCcHHHHHHH--cCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCC--HHHHHHHHHcCCcccccCCCCCCCc
Q 043183            2 TRSRRLQTYRAAL--NGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKY--IEFLKELVKIMEAEDLAKPNKHGGT   77 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~--~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~--~~iv~~Ll~~~~~~~l~~~d~~G~T   77 (564)
                      |..|.||||.|+.  .|+.++++.|++.+.+ + ...|.+|.||||+|++.|+  .++|++|++.  +++++.+|..|.|
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD-V-N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~--GADVN~kD~~G~T  249 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVN-V-NLQNNHLITPLHTYLITGNVCASVIKKIIEL--GGDMDMKCVNGMS  249 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCC-C-CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc--CCCCCCCCCCCCC
Confidence            4569999999865  4689999999998876 3 4468899999999999995  5999999998  6788999999999


Q ss_pred             HHHHHHH------------------------------------hch-----HHHHhcCcccccccCCCCCcHHHHHHH--
Q 043183           78 ALSMLLH------------------------------------LEG-----RVMMKHNRSIAMVRDHNQTLPIDVAAS--  114 (564)
Q Consensus        78 pLH~Aa~------------------------------------~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~--  114 (564)
                      |||+|+.                                    +.|     +.|++.+++ ++.+|..|+||||+|+.  
T Consensus       250 PLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aaa~~  328 (764)
T PHA02716        250 PIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYILRH  328 (764)
T ss_pred             HHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHHHHh
Confidence            9997640                                    233     566666654 57789999999999864  


Q ss_pred             cCCCchHHHHHH-------------------cc--------------cCCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 043183          115 LGHKDMPICMVS-------------------MN--------------MLLPDVALQLCRDRPKLATLRAGDCETPLHALA  161 (564)
Q Consensus       115 ~g~~~iv~~Ll~-------------------~~--------------~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa  161 (564)
                      .++.+++++|++                   +.              .++.++++.|++.+.+. +.+|..|+||||.++
T Consensus       329 ~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADI-n~kn~~G~TPLh~y~  407 (764)
T PHA02716        329 NISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADI-TAVNCLGYTPLTSYI  407 (764)
T ss_pred             CCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCC-CCcCCCCCChHHHHH
Confidence            467899999998                   10              25678999999987665 789999999999432


Q ss_pred             -h--C-CCCCcccccccccchHHHHhhhcC-----------------C-----cHHHHHH-----------------hHH
Q 043183          162 -R--K-NLTSSNFINQNQRGIFRRCFNLGA-----------------E-----DVEVQRL-----------------QAL  198 (564)
Q Consensus       162 -~--~-g~~~~~f~~~~~~~~~~~~~~~~~-----------------~-----h~~v~~~-----------------~~~  198 (564)
                       .  . +..          ..++.++..+.                 .     |..+.+.                 ...
T Consensus       408 ~~a~n~~~~----------dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~  477 (764)
T PHA02716        408 CTAQNYMYY----------DIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIH  477 (764)
T ss_pred             HHHHhcChH----------HHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccc
Confidence             2  1 211          11111111110                 0     0000000                 000


Q ss_pred             HHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHH-----HHHHHHHhCCCcccccccccchHHHhhcCCchHHHH
Q 043183          199 KLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVG-----FLLILTREYPNLHISYRRFESSGAHLQTRNNILHLA  273 (564)
Q Consensus       199 ~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~-----iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlA  273 (564)
                      +++..     +.....+.+..|..|+||||+|+..|+.+     ++++|++.|+++....          ++|+||||+|
T Consensus       478 ~v~~~-----~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d----------~~G~TPLh~A  542 (764)
T PHA02716        478 DVYHC-----AIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPT----------KNGVTPLMLT  542 (764)
T ss_pred             hhhHH-----HHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccC----------CCCCCHHHHH
Confidence            00000     01122345677899999999999999874     5599999999984433          9999999999


Q ss_pred             HhcCCC
Q 043183          274 AMLPPQ  279 (564)
Q Consensus       274 a~~~~~  279 (564)
                      ++.|+.
T Consensus       543 ~~~g~~  548 (764)
T PHA02716        543 MRNNRL  548 (764)
T ss_pred             HHcCCc
Confidence            999986

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.3e-29  Score=267.82  Aligned_cols=234  Identities=13%  Similarity=0.091  Sum_probs=177.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      .+.||||.||+.|+.++|+.|++.+.+ + ...|.+|.||||+||..|+.++++.|++.....+.    ..+.+|+|.|+
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gad-v-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~l~~a~  109 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHN-V-NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTLVAIKDAF  109 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCC-C-CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----ccchhhHHHHH
Confidence            478999999999999999999998765 3 44688999999999999999999999987432222    45678999988


Q ss_pred             Hhch-----HHHHhc---------------------------------CcccccccCCC-CCcHHHHHHHcCCCchHHHH
Q 043183           84 HLEG-----RVMMKH---------------------------------NRSIAMVRDHN-QTLPIDVAASLGHKDMPICM  124 (564)
Q Consensus        84 ~~~G-----~~Ll~~---------------------------------~~~~~~~~d~~-G~TpLh~Aa~~g~~~iv~~L  124 (564)
                       ..|     +.++..                                 +. .++..|.. |.||||+|+..|+.+++++|
T Consensus       110 -~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~ga-din~~~~~~g~tpLh~A~~~~~~~iv~~L  187 (477)
T PHA02878        110 -NNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGA-DINMKDRHKGNTALHYATENKDQRLTELL  187 (477)
T ss_pred             -HcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCC-CCCccCCCCCCCHHHHHHhCCCHHHHHHH
Confidence             776     333322                                 22 23556667 99999999999999999988


Q ss_pred             HHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHH
Q 043183          125 VSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERL  204 (564)
Q Consensus       125 l~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l  204 (564)
                      ++              .+.+ ++.+|..|.||||+|++.|+.                                ++++.|
T Consensus       188 l~--------------~gad-~n~~d~~g~tpLh~A~~~~~~--------------------------------~iv~~L  220 (477)
T PHA02878        188 LS--------------YGAN-VNIPDKTNNSPLHHAVKHYNK--------------------------------PIVHIL  220 (477)
T ss_pred             HH--------------CCCC-CCCcCCCCCCHHHHHHHhCCH--------------------------------HHHHHH
Confidence            53              4444 477899999999999998854                                566666


Q ss_pred             HHhhccCChhhHhhhhcCCchHHHHHHHc-CCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccc
Q 043183          205 CGKVALLSDSEISRLISKPGALIFDAAKQ-GNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLN  283 (564)
Q Consensus       205 ~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~-g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~  283 (564)
                      ++     .+.+++.+|..|+||||+|+.. ++.+++++|+++|+++....+         ..|+||||+|  .++.++++
T Consensus       221 l~-----~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~---------~~g~TpLh~A--~~~~~~v~  284 (477)
T PHA02878        221 LE-----NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY---------ILGLTALHSS--IKSERKLK  284 (477)
T ss_pred             HH-----cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC---------CCCCCHHHHH--ccCHHHHH
Confidence            54     4567888899999999999975 789999999999998843321         3799999999  34555555


Q ss_pred             cccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHH
Q 043183          284 IVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTK  322 (564)
Q Consensus       284 ~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~  322 (564)
                      +|           ++   .....+..|.+|.||..+..+
T Consensus       285 ~L-----------l~---~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        285 LL-----------LE---YGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             HH-----------HH---CCCCCCCcCCCCCCHHHHHHH
Confidence            44           11   233456678899999887654

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=4.3e-28  Score=257.17  Aligned_cols=258  Identities=11%  Similarity=0.017  Sum_probs=181.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCC--HHHHHHHHHcCCcccccC-CCCCCCcH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKY--IEFLKELVKIMEAEDLAK-PNKHGGTA   78 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~--~~iv~~Ll~~~~~~~l~~-~d~~G~Tp   78 (564)
                      |..|.||||.||+.|+.++|+.|++.+.+ + ...|.+|.||||+|+..++  .+++++|++.  +.+++. .|..|.||
T Consensus        69 d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-i-n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~--Gadin~~~d~~g~tp  144 (446)
T PHA02946         69 DDDGNYPLHIASKINNNRIVAMLLTHGAD-P-NACDKQHKTPLYYLSGTDDEVIERINLLVQY--GAKINNSVDEEGCGP  144 (446)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCcCC-C-CCCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCcccccCCCCCcH
Confidence            56899999999999999999999998765 3 4468999999999998764  7999999998  556663 68889999


Q ss_pred             HHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCC--CchHHHHHH-------------------ccc--C
Q 043183           79 LSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGH--KDMPICMVS-------------------MNM--L  130 (564)
Q Consensus        79 LH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~--~~iv~~Ll~-------------------~~~--~  130 (564)
                      ||.|.  .|     +.|++.+. .++.+|..|+||||+|+..++  .+++++|++                   +..  +
T Consensus       145 L~aa~--~~~~~vv~~Ll~~ga-d~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~  221 (446)
T PHA02946        145 LLACT--DPSERVFKKIMSIGF-EARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVK  221 (446)
T ss_pred             HHHHH--CCChHHHHHHHhccc-cccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCC
Confidence            98444  45     66776664 357788889999998887655  478888887                   222  3


Q ss_pred             CHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcC------CcHHHHHHhHHHHHHHH
Q 043183          131 LPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGA------EDVEVQRLQALKLVERL  204 (564)
Q Consensus       131 ~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~------~h~~v~~~~~~~lv~~l  204 (564)
                      +.++++.|++ + ..++.+|.+|.||||+|+..++..         ..++.++..+.      .|..+ .....++++. 
T Consensus       222 ~~~iv~lLl~-g-adin~~d~~G~TpLh~A~~~~~~~---------~~~~~Ll~~g~~~~~~~~~~a~-~~~~~~~~e~-  288 (446)
T PHA02946        222 NVDIINLLLP-S-TDVNKQNKFGDSPLTLLIKTLSPA---------HLINKLLSTSNVITDQTVNICI-FYDRDDVLEI-  288 (446)
T ss_pred             cHHHHHHHHc-C-CCCCCCCCCCCCHHHHHHHhCChH---------HHHHHHHhCCCCCCCcHHHHHH-HcCchHHHHH-
Confidence            6678887774 4 456889999999999999987530         01111111110      00000 0000011111 


Q ss_pred             HHhhccCChhhHhhh-hcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccc
Q 043183          205 CGKVALLSDSEISRL-ISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLN  283 (564)
Q Consensus       205 ~~~~l~~~~~~~~~~-d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~  283 (564)
                                 ++.. +..|.||||+|+.+|+.+++++||+++                 .+|+||||+|+..++.++++
T Consensus       289 -----------l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~-----------------~~~~t~L~~A~~~~~~~~v~  340 (446)
T PHA02946        289 -----------INDKGKQYDSTDFKMAVEVGSIRCVKYLLDND-----------------IICEDAMYYAVLSEYETMVD  340 (446)
T ss_pred             -----------HHHcCcccCCCHHHHHHHcCCHHHHHHHHHCC-----------------CccccHHHHHHHhCHHHHHH
Confidence                       1122 235789999999999999999999976                 45789999999999988888


Q ss_pred             cccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHH
Q 043183          284 IVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTK  322 (564)
Q Consensus       284 ~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~  322 (564)
                      +|.           .   .....+.+ .+|+||..+...
T Consensus       341 ~Ll-----------~---~ga~~n~~-~~G~t~l~~a~~  364 (446)
T PHA02946        341 YLL-----------F---NHFSVDSV-VNGHTCMSECVR  364 (446)
T ss_pred             HHH-----------H---CCCCCCCc-cccccHHHHHHH
Confidence            761           1   11122333 379999887654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.2e-28  Score=262.39  Aligned_cols=247  Identities=13%  Similarity=0.113  Sum_probs=195.3

Q ss_pred             HHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcC---CHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhc
Q 043183           10 YRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGK---YIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLE   86 (564)
Q Consensus        10 h~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g---~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~   86 (564)
                      ..++..++.++++.|++.+.+ + ...+..|.||||+|+..|   +.++++.|++.  +.+++.+|..|.||||+|+ ..
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~-v-n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~--Gadin~~~~~g~TpLh~A~-~~   93 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGAD-V-NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA--GADVNAPERCGFTPLHLYL-YN   93 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCC-c-ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH-Hc
Confidence            456788999999999998876 3 446888999999999999   99999999998  6789999999999999999 88


Q ss_pred             h------HHHHhcCcccccccCCCCCcHHHHHH--HcCCCchHHHHHHc---------------------ccCCHHHHHH
Q 043183           87 G------RVMMKHNRSIAMVRDHNQTLPIDVAA--SLGHKDMPICMVSM---------------------NMLLPDVALQ  137 (564)
Q Consensus        87 G------~~Ll~~~~~~~~~~d~~G~TpLh~Aa--~~g~~~iv~~Ll~~---------------------~~~~~~i~~~  137 (564)
                      |      +.|++.+.+ ++.+|..|.||||+|+  ..++.+++++|++.                     .....++++.
T Consensus        94 ~~~~~iv~lLl~~ga~-in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~  172 (471)
T PHA03095         94 ATTLDVIKLLIKAGAD-VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRL  172 (471)
T ss_pred             CCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHH
Confidence            7      777777765 6888999999999999  45678899999871                     1234567777


Q ss_pred             HHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHh
Q 043183          138 LCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEIS  217 (564)
Q Consensus       138 Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~  217 (564)
                      |++.+.+... .|..|+||||+|+.....                              ..++++.+++     .+.+++
T Consensus       173 Ll~~g~~~~~-~d~~g~t~Lh~~~~~~~~------------------------------~~~i~~~Ll~-----~g~~~~  216 (471)
T PHA03095        173 LIDAGADVYA-VDDRFRSLLHHHLQSFKP------------------------------RARIVRELIR-----AGCDPA  216 (471)
T ss_pred             HHHcCCCCcc-cCCCCCCHHHHHHHHCCC------------------------------cHHHHHHHHH-----cCCCCc
Confidence            7777766643 377777777777765422                              1245555543     456788


Q ss_pred             hhhcCCchHHHHHHHcCCH--HHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHH
Q 043183          218 RLISKPGALIFDAAKQGNV--GFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQRE  295 (564)
Q Consensus       218 ~~d~~G~TpLh~Aa~~g~~--~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~e  295 (564)
                      .+|..|+||||+|+..|+.  .+++.|++.+.++....          .+|+||||+|+..|+.++++.|          
T Consensus       217 ~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d----------~~g~TpLh~A~~~~~~~~v~~L----------  276 (471)
T PHA03095        217 ATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN----------RYGQTPLHYAAVFNNPRACRRL----------  276 (471)
T ss_pred             ccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcC----------CCCCCHHHHHHHcCCHHHHHHH----------
Confidence            8999999999999999975  68889999998884433          8999999999999998888776          


Q ss_pred             HhHhhcccchHHhhccCCCCchhhhHH
Q 043183          296 FCEKVVQRGFAEAKNREGLTPRALFTK  322 (564)
Q Consensus       296 lv~~~~~~~~~~~~n~~g~t~~dl~~~  322 (564)
                       ++   .....+.+|.+|+||..+...
T Consensus       277 -L~---~gad~n~~~~~g~tpl~~A~~  299 (471)
T PHA03095        277 -IA---LGADINAVSSDGNTPLSLMVR  299 (471)
T ss_pred             -HH---cCCCCcccCCCCCCHHHHHHH
Confidence             11   234456788899999988654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.1e-27  Score=251.65  Aligned_cols=208  Identities=12%  Similarity=0.057  Sum_probs=173.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      +..|.||||.|+..|+.++++.|++.+...  ...+.++.||||.|+..|+.++|+.|++.+. ...+..+..|.||||+
T Consensus        32 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~--~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~tpL~~  108 (413)
T PHA02875         32 IYDGISPIKLAMKFRDSEAIKLLMKHGAIP--DVKYPDIESELHDAVEEGDVKAVEELLDLGK-FADDVFYKDGMTPLHL  108 (413)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCc--cccCCCcccHHHHHHHCCCHHHHHHHHHcCC-cccccccCCCCCHHHH
Confidence            357999999999999999999999987652  3346789999999999999999999999842 2234567789999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      |+ ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++              .+. ..+.+|..|.||
T Consensus       109 A~-~~~~~~iv~~Ll~~gad-~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~--------------~g~-~~~~~d~~g~Tp  171 (413)
T PHA02875        109 AT-ILKKLDIMKLLIARGAD-PDIPNTDKFSPLHLAVMMGDIKGIELLID--------------HKA-CLDIEDCCGCTP  171 (413)
T ss_pred             HH-HhCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHh--------------cCC-CCCCCCCCCCCH
Confidence            99 998     888888765 57889999999999999999999999863              444 347889999999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCC-chHHHHHHHcCC
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKP-GALIFDAAKQGN  235 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G-~TpLh~Aa~~g~  235 (564)
                      ||+|+..|+.                                ++++.|++     .+++++..+..| .||+|+|+..|+
T Consensus       172 L~~A~~~g~~--------------------------------eiv~~Ll~-----~ga~~n~~~~~~~~t~l~~A~~~~~  214 (413)
T PHA02875        172 LIIAMAKGDI--------------------------------AICKMLLD-----SGANIDYFGKNGCVAALCYAIENNK  214 (413)
T ss_pred             HHHHHHcCCH--------------------------------HHHHHHHh-----CCCCCCcCCCCCCchHHHHHHHcCC
Confidence            9999999965                                56666654     445666777776 489999999999


Q ss_pred             HHHHHHHHHhCCCcccccccccchHHHh----hcCCchHHHHHhcC
Q 043183          236 VGFLLILTREYPNLHISYRRFESSGAHL----QTRNNILHLAAMLP  277 (564)
Q Consensus       236 ~~iv~~LL~~~~~~~~~~~r~~~i~n~~----~~G~TpLhlAa~~~  277 (564)
                      .+++++|+++|+++           |+.    .+|.|||+++....
T Consensus       215 ~~iv~~Ll~~gad~-----------n~~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        215 IDIVRLFIKRGADC-----------NIMFMIEGEECTILDMICNMC  249 (413)
T ss_pred             HHHHHHHHHCCcCc-----------chHhhcCCCchHHHHHHHhhc
Confidence            99999999999998           333    77999999987654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.6e-27  Score=254.99  Aligned_cols=234  Identities=13%  Similarity=0.094  Sum_probs=168.9

Q ss_pred             CCCCcHHHHHHHcC--CHHHHHHHHHhCccccccccCCCCChHHHHHHhcC------CHHHHHHHHHcCCcccccCCCCC
Q 043183            3 RSRRLQTYRAALNG--DWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGK------YIEFLKELVKIMEAEDLAKPNKH   74 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G--~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g------~~~iv~~Ll~~~~~~~l~~~d~~   74 (564)
                      .+|.||||.++..+  +.++|+.|++.+.+ ++. .+ .+.||||.|+.++      +.++|++|++.  +++++.+|..
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd-vn~-~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~  107 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDNGAD-VNY-KG-YIETPLCAVLRNREITSNKIKKIVKLLLKF--GADINLKTFN  107 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHcCCC-ccC-CC-CCCCcHHHHHhccCcchhhHHHHHHHHHHC--CCCCCCCCCC
Confidence            35899998776553  68999999999876 322 23 5799999998764      47899999998  6789999999


Q ss_pred             CCcHHHHHHHhch--------HHHHhcCcccccccCCCCCcHHHHHHHc--CCCchHHHHHHcc----------------
Q 043183           75 GGTALSMLLHLEG--------RVMMKHNRSIAMVRDHNQTLPIDVAASL--GHKDMPICMVSMN----------------  128 (564)
Q Consensus        75 G~TpLH~Aa~~~G--------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~--g~~~iv~~Ll~~~----------------  128 (564)
                      |.||||.|+ ..+        +.|++++.+..+.+|..|+||||+|+..  ++.+++++|++..                
T Consensus       108 g~tpL~~a~-~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~  186 (494)
T PHA02989        108 GVSPIVCFI-YNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMN  186 (494)
T ss_pred             CCcHHHHHH-HhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHH
Confidence            999999987 653        8888888765478899999999999764  5778898886500                


Q ss_pred             --------cCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHH
Q 043183          129 --------MLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKL  200 (564)
Q Consensus       129 --------~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~l  200 (564)
                              .++.++++.|++++.+. +.+|..|.||||.++..+..                          ......++
T Consensus       187 ~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~t~l~~~~~~~~~--------------------------~~~~~~~i  239 (494)
T PHA02989        187 IYLRNDIDVISIKVIKYLIKKGVNI-ETNNNGSESVLESFLDNNKI--------------------------LSKKEFKV  239 (494)
T ss_pred             HHHhcccccccHHHHHHHHhCCCCc-cccCCccccHHHHHHHhchh--------------------------hcccchHH
Confidence                    11233444444443332 33333444444444333211                          00001234


Q ss_pred             HHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCC
Q 043183          201 VERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQD  280 (564)
Q Consensus       201 v~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~  280 (564)
                      ++.+.      .+.+++.+|..|+||||+|+..|+.+++++|++.|+++....          ..|+||||+|++.++.+
T Consensus       240 l~~l~------~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d----------~~G~TpL~~A~~~~~~~  303 (494)
T PHA02989        240 LNFIL------KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVS----------KDGDTVLTYAIKHGNID  303 (494)
T ss_pred             HHHHH------hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccC----------CCCCCHHHHHHHcCCHH
Confidence            44332      236789999999999999999999999999999999984433          89999999999999988


Q ss_pred             ccccc
Q 043183          281 RLNIV  285 (564)
Q Consensus       281 ~~~~l  285 (564)
                      +++.|
T Consensus       304 iv~~L  308 (494)
T PHA02989        304 MLNRI  308 (494)
T ss_pred             HHHHH
Confidence            87765

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=7.7e-27  Score=252.12  Aligned_cols=240  Identities=14%  Similarity=0.126  Sum_probs=177.2

Q ss_pred             CCCcHHHHHHH--cCCHHHHHHHHHhCccccccccCCCCChHHHHHHhc-----CCHHHHHHHHHcCCcccccCCCCCCC
Q 043183            4 SRRLQTYRAAL--NGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAG-----KYIEFLKELVKIMEAEDLAKPNKHGG   76 (564)
Q Consensus         4 ~g~t~Lh~Aa~--~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~-----g~~~iv~~Ll~~~~~~~l~~~d~~G~   76 (564)
                      .|.|+++.+..  .++.++|+.|++.+.+ + ...+..|.||||.|+.+     ++.+++++|++.  +++++.+|..|.
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad-v-n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~--GadiN~~d~~G~  110 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVKLFINLGAN-V-NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN--GADINKKNSDGE  110 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHHHHHHCCCC-C-CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC--CCCCCCCCCCcC
Confidence            46787765544  4489999999999886 3 44688999999999875     678999999998  678999999999


Q ss_pred             cHHHHHHHhch--------HHHHhcCcccccccCCCCCcHHHHHHHcCC---CchHHHHHHcccCCHHHHHHHHHcCCcc
Q 043183           77 TALSMLLHLEG--------RVMMKHNRSIAMVRDHNQTLPIDVAASLGH---KDMPICMVSMNMLLPDVALQLCRDRPKL  145 (564)
Q Consensus        77 TpLH~Aa~~~G--------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~---~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~  145 (564)
                      ||||+|+ ..|        +.|++.+++ ++.+|.+|.||||+|+..|+   .+++++|+              +++.+.
T Consensus       111 TpLh~a~-~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll--------------~~gadi  174 (489)
T PHA02798        111 TPLYCLL-SNGYINNLEILLFMIENGAD-TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLL--------------EKGVDI  174 (489)
T ss_pred             cHHHHHH-HcCCcChHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCcchHHHHHHHH--------------HhCCCc
Confidence            9999999 865        788888765 58899999999999999987   78888775              466555


Q ss_pred             ccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCC--------cHH----------HHHHhHHHHHHHHHHh
Q 043183          146 ATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAE--------DVE----------VQRLQALKLVERLCGK  207 (564)
Q Consensus       146 ~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~--------h~~----------v~~~~~~~lv~~l~~~  207 (564)
                      ....+..|.||||.++..+..      ......++.+++.+..        ...          ..+....++++.+.  
T Consensus       175 n~~~~~~~~t~Lh~~~~~~~~------~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~--  246 (489)
T PHA02798        175 NTHNNKEKYDTLHCYFKYNID------RIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIF--  246 (489)
T ss_pred             ccccCcCCCcHHHHHHHhccc------cCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHH--
Confidence            333356899999998875411      0011122222222110        000          00001123333322  


Q ss_pred             hccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          208 VALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       208 ~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                          .+.++|.+|..|+||||+|+..|+.+++++|++.|+++....          ..|+||||+|++.++.++++.+
T Consensus       247 ----~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d----------~~G~TpL~~A~~~~~~~iv~~l  310 (489)
T PHA02798        247 ----SYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIIT----------ELGNTCLFTAFENESKFIFNSI  310 (489)
T ss_pred             ----hcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccC----------CCCCcHHHHHHHcCcHHHHHHH
Confidence                135789999999999999999999999999999999983332          8999999999999998887765

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.1e-26  Score=251.16  Aligned_cols=235  Identities=15%  Similarity=0.115  Sum_probs=174.1

Q ss_pred             CCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH-----HHHhch---
Q 043183           16 GDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM-----LLHLEG---   87 (564)
Q Consensus        16 G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~-----Aa~~~G---   87 (564)
                      ...+.++.+++.+ + +....+..+.||||+|++.|+.++|+.|++.  +.+++..+..|.||||+     |+ ..|   
T Consensus        13 ~~~~~~~~~~~~~-~-~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~--g~~~~~~~~~~~t~L~~~~~~~a~-~~~~~~   87 (480)
T PHA03100         13 IKVKNIKYIIMED-D-LNDYSYKKPVLPLYLAKEARNIDVVKILLDN--GADINSSTKNNSTPLHYLSNIKYN-LTDVKE   87 (480)
T ss_pred             HHHHHHHHHHhcC-c-cchhhhcccchhhhhhhccCCHHHHHHHHHc--CCCCCCccccCcCHHHHHHHHHHH-hhchHH
Confidence            3456777888654 2 3345678899999999999999999999998  56788889999999999     99 888   


Q ss_pred             --HHHHhcCcccccccCCCCCcHHHHHH--HcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhC
Q 043183           88 --RVMMKHNRSIAMVRDHNQTLPIDVAA--SLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARK  163 (564)
Q Consensus        88 --~~Ll~~~~~~~~~~d~~G~TpLh~Aa--~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~  163 (564)
                        +.|++.+++. +..|..|.||||+|+  ..|+.+++++|++              .+.+ .+..|.+|.||||+|+..
T Consensus        88 iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~  151 (480)
T PHA03100         88 IVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLD--------------NGAN-VNIKNSDGENLLHLYLES  151 (480)
T ss_pred             HHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHH--------------cCCC-CCccCCCCCcHHHHHHHc
Confidence              8888888776 888999999999999  9999999999863              4444 477899999999999999


Q ss_pred             C--CCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHH
Q 043183          164 N--LTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLI  241 (564)
Q Consensus       164 g--~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~  241 (564)
                      |  +.                                ++++.|++     .+.+++.+|..|.||||+|+..|+.+++++
T Consensus       152 ~~~~~--------------------------------~iv~~Ll~-----~g~din~~d~~g~tpL~~A~~~~~~~iv~~  194 (480)
T PHA03100        152 NKIDL--------------------------------KILKLLID-----KGVDINAKNRYGYTPLHIAVEKGNIDVIKF  194 (480)
T ss_pred             CCChH--------------------------------HHHHHHHH-----CCCCcccccCCCCCHHHHHHHhCCHHHHHH
Confidence            8  43                                44444433     234455566666666666666666666666


Q ss_pred             HHHhCCCcccccccc--------------------cchH----------HHh-hcCCchHHHHHhcCCCCccccccchHH
Q 043183          242 LTREYPNLHISYRRF--------------------ESSG----------AHL-QTRNNILHLAAMLPPQDRLNIVSGAAL  290 (564)
Q Consensus       242 LL~~~~~~~~~~~r~--------------------~~i~----------n~~-~~G~TpLhlAa~~~~~~~~~~l~g~~l  290 (564)
                      |+++|+++.......                    ..+.          |.. ..|+||||+|+..|+.+++++|-    
T Consensus       195 Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll----  270 (480)
T PHA03100        195 LLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL----  270 (480)
T ss_pred             HHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----
Confidence            666666554321110                    0000          111 67999999999999988877661    


Q ss_pred             HhhHHHhHhhcccchHHhhccCCCCchhhhHH
Q 043183          291 QMQREFCEKVVQRGFAEAKNREGLTPRALFTK  322 (564)
Q Consensus       291 ~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~  322 (564)
                             +   .....+.+|.+|.||.++..+
T Consensus       271 -------~---~gad~n~~d~~g~tpl~~A~~  292 (480)
T PHA03100        271 -------D---LGANPNLVNKYGDTPLHIAIL  292 (480)
T ss_pred             -------H---cCCCCCccCCCCCcHHHHHHH
Confidence                   1   223456678899999988654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=5.7e-27  Score=241.93  Aligned_cols=206  Identities=22%  Similarity=0.207  Sum_probs=173.8

Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHc
Q 043183           41 DTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASL  115 (564)
Q Consensus        41 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~  115 (564)
                      .+-.+.|++.|..+.|+.|++.- +.+++..|.+|.|+||+|| .++     ++|++++++.......-|.||||+||++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAA-iNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAA-INNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHH-HcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            45688999999999999999984 6788999999999999999 999     9999999886555557799999999999


Q ss_pred             CCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHH
Q 043183          116 GHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRL  195 (564)
Q Consensus       116 g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~  195 (564)
                      |+..+|++|+               +.+..++.+|.+|.||||.|++.|+.                             
T Consensus       123 G~~~vv~lLl---------------qhGAdpt~~D~~G~~~lHla~~~~~~-----------------------------  158 (600)
T KOG0509|consen  123 GHISVVDLLL---------------QHGADPTLKDKQGLTPLHLAAQFGHT-----------------------------  158 (600)
T ss_pred             CcHHHHHHHH---------------HcCCCCceecCCCCcHHHHHHHhCch-----------------------------
Confidence            9999999986               44555589999999999999999976                             


Q ss_pred             hHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHh
Q 043183          196 QALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAM  275 (564)
Q Consensus       196 ~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~  275 (564)
                         -++-+++.     .+.+++.+|.+|+||||+||.+|+...+..||+-++++...++         ++|+||||+|+.
T Consensus       159 ---~~vayll~-----~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~---------~~g~TpLHwa~~  221 (600)
T KOG0509|consen  159 ---ALVAYLLS-----KGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDD---------NHGNTPLHWAVV  221 (600)
T ss_pred             ---HHHHHHHH-----hcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccccccc---------ccCCchHHHHHh
Confidence               34445432     3478899999999999999999999989999999998855444         899999999999


Q ss_pred             cCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHHH
Q 043183          276 LPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTKE  323 (564)
Q Consensus       276 ~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~~  323 (564)
                      .|+.+++.++..              ...+.+..|.+|+||.++.++.
T Consensus       222 ~gN~~~v~Ll~~--------------g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  222 GGNLTAVKLLLE--------------GGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cCCcceEehhhh--------------cCCcccccccCCCCHHHHHHHh
Confidence            999999885411              2234556778899999998664

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=2.6e-26  Score=251.33  Aligned_cols=223  Identities=13%  Similarity=0.059  Sum_probs=177.8

Q ss_pred             HHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHh--cCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch---
Q 043183           13 ALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAA--GKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG---   87 (564)
Q Consensus        13 a~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~--~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G---   87 (564)
                      .+.++.++++.|++.+..+++...|..|.||||+|+.  .++.+++++|++.  +.+++.+|..|.||||+|+ +.|   
T Consensus       150 ~~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~--GADVN~kD~~G~TPLH~Aa-~~g~~~  226 (764)
T PHA02716        150 TRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN--GVNVNLQNNHLITPLHTYL-ITGNVC  226 (764)
T ss_pred             ccCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-HcCCCC
Confidence            3568999999999998233434348889999999875  4678999999998  6789999999999999999 887   


Q ss_pred             ----HHHHhcCcccccccCCCCCcHHHHHH---HcCCCchHHHHHH--------------------cccCCHHHHHHHHH
Q 043183           88 ----RVMMKHNRSIAMVRDHNQTLPIDVAA---SLGHKDMPICMVS--------------------MNMLLPDVALQLCR  140 (564)
Q Consensus        88 ----~~Ll~~~~~~~~~~d~~G~TpLh~Aa---~~g~~~iv~~Ll~--------------------~~~~~~~i~~~Ll~  140 (564)
                          +.|++.+.+ ++.+|..|+||||+|+   ..++.++++.|++                    +..++.++++.|++
T Consensus       227 ~eIVklLLe~GAD-VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe  305 (764)
T PHA02716        227 ASVIKKIIELGGD-MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ  305 (764)
T ss_pred             HHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh
Confidence                678888865 6888999999999985   4678889998865                    23477899999999


Q ss_pred             cCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhh
Q 043183          141 DRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLI  220 (564)
Q Consensus       141 ~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d  220 (564)
                      .+++. +.+|.+|+||||+|+..++.                      +        .++++.|++     .+++++.+|
T Consensus       306 ~GAdI-N~kD~~G~TPLH~Aaa~~~~----------------------~--------~eIVklLLe-----~GADIN~kD  349 (764)
T PHA02716        306 PGVKL-HYKDSAGRTCLHQYILRHNI----------------------S--------TDIIKLLHE-----YGNDLNEPD  349 (764)
T ss_pred             CCCce-eccCCCCCCHHHHHHHHhCC----------------------C--------chHHHHHHH-----cCCCCccCC
Confidence            88775 78899999999998764322                      1        156666644     456788999


Q ss_pred             cCCchHHHHHHH--------------cCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHH----HhcCCCCcc
Q 043183          221 SKPGALIFDAAK--------------QGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLA----AMLPPQDRL  282 (564)
Q Consensus       221 ~~G~TpLh~Aa~--------------~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlA----a~~~~~~~~  282 (564)
                      ..|+||||+|+.              .|+.+++++|+++|+++....          ..|+||||.+    ...++.+++
T Consensus       350 ~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn----------~~G~TPLh~y~~~a~n~~~~dIv  419 (764)
T PHA02716        350 NIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVN----------CLGYTPLTSYICTAQNYMYYDII  419 (764)
T ss_pred             CCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcC----------CCCCChHHHHHHHHHhcChHHHH
Confidence            999999999875              378999999999999984443          8999999942    234556666


Q ss_pred             ccc
Q 043183          283 NIV  285 (564)
Q Consensus       283 ~~l  285 (564)
                      ++|
T Consensus       420 klL  422 (764)
T PHA02716        420 DCL  422 (764)
T ss_pred             HHH
Confidence            665

>PHA02730 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.1e-25  Score=241.87  Aligned_cols=154  Identities=12%  Similarity=0.050  Sum_probs=127.7

Q ss_pred             CCCCCcHHHHHHHcC---CHHHHHHHHHhCccccccccCCCCChHHHHHHhcC--CHHHHHHHHHcCCcccccCCCCCCC
Q 043183            2 TRSRRLQTYRAALNG---DWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGK--YIEFLKELVKIMEAEDLAKPNKHGG   76 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G---~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~~~~l~~~d~~G~   76 (564)
                      |..|.||||.|+..|   +.++|+.|++.+++.  ...|..|.||||+|+..+  +.|+|++|++.+.+++.+..+..+.
T Consensus        38 d~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi--n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d  115 (672)
T PHA02730         38 DRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER--LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND  115 (672)
T ss_pred             CCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC--cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence            467999999999997   599999999998773  345899999999999977  7999999999977777788888899


Q ss_pred             cHHHHHHHh--ch-----HHHHhcCccccccc----C-CCCCcHHHHHHHcCCCchHHHHHH----c-------------
Q 043183           77 TALSMLLHL--EG-----RVMMKHNRSIAMVR----D-HNQTLPIDVAASLGHKDMPICMVS----M-------------  127 (564)
Q Consensus        77 TpLH~Aa~~--~G-----~~Ll~~~~~~~~~~----d-~~G~TpLh~Aa~~g~~~iv~~Ll~----~-------------  127 (564)
                      +|||.++ .  .+     +.|+..+...++..    + ..|.+|+++|+..++.|+|++|++    .             
T Consensus       116 ~~l~~y~-~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~  194 (672)
T PHA02730        116 FDLYSYM-SSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSD  194 (672)
T ss_pred             chHHHHH-HhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCC
Confidence            9999999 7  44     67886433222322    1 379999999999999999999998    1             


Q ss_pred             ----------------ccCCHHHHHHHHHcCCccccccCCCCCcHHHH
Q 043183          128 ----------------NMLLPDVALQLCRDRPKLATLRAGDCETPLHA  159 (564)
Q Consensus       128 ----------------~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~  159 (564)
                                      .....|+++.|++.+.+. +.+|.+|+||||+
T Consensus       195 ~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~kd~~G~TpLh~  241 (672)
T PHA02730        195 RCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGRDEGGSLPIQY  241 (672)
T ss_pred             ccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCCCCCCCCHHHH
Confidence                            123568999999999766 8899999999996

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4.3e-26  Score=245.75  Aligned_cols=243  Identities=15%  Similarity=0.141  Sum_probs=185.9

Q ss_pred             HHHHHHcCCHHHHHHHHHh---CccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHh
Q 043183            9 TYRAALNGDWAVAKSIYDV---YEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHL   85 (564)
Q Consensus         9 Lh~Aa~~G~~~~v~~Ll~~---~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~   85 (564)
                      |+.+....+.+.+...++.   .+... ...+..+.||||.||+.|+.++|++|++.  +.+++.+|..|.||||+|| .
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~-~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~--gadvn~~d~~g~TpLh~A~-~   79 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHTENYS-TSASLIPFIPLHQAVEARNLDVVKSLLTR--GHNVNQPDHRDLTPLHIIC-K   79 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhhhhhc-CcccccCcchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH-H
Confidence            5667777776556555554   11111 22356789999999999999999999998  6788999999999999999 8


Q ss_pred             ch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcc-----------------c--CCHHHHHHHHHc
Q 043183           86 EG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMN-----------------M--LLPDVALQLCRD  141 (564)
Q Consensus        86 ~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~-----------------~--~~~~i~~~Ll~~  141 (564)
                      .|     +.|++......   ...+.+|||.|+..++.+++++|+...                 .  ...++++.|++.
T Consensus        80 ~g~~~~v~~Ll~~~~~~~---~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~  156 (477)
T PHA02878         80 EPNKLGMKEMIRSINKCS---VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSY  156 (477)
T ss_pred             CccHhHHHHHHHHHhccc---cccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHc
Confidence            88     66666543321   156789999999999999999998621                 1  123489999998


Q ss_pred             CCccccccCCC-CCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhh
Q 043183          142 RPKLATLRAGD-CETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLI  220 (564)
Q Consensus       142 ~~~~~~~~d~~-G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d  220 (564)
                      +.+. +..|.+ |+||||+|+..|+.                                ++++.|++     .+++++.+|
T Consensus       157 gadi-n~~~~~~g~tpLh~A~~~~~~--------------------------------~iv~~Ll~-----~gad~n~~d  198 (477)
T PHA02878        157 GADI-NMKDRHKGNTALHYATENKDQ--------------------------------RLTELLLS-----YGANVNIPD  198 (477)
T ss_pred             CCCC-CccCCCCCCCHHHHHHhCCCH--------------------------------HHHHHHHH-----CCCCCCCcC
Confidence            8776 677777 99999999999965                                66666654     456788899


Q ss_pred             cCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhc-CCCCccccccchHHHhhHHHhHh
Q 043183          221 SKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAML-PPQDRLNIVSGAALQMQREFCEK  299 (564)
Q Consensus       221 ~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~-~~~~~~~~l~g~~l~~q~elv~~  299 (564)
                      ..|.||||.|+..|+.+++++|++.|+++....          ..|+||||+|+.. ++.+++++|           ++ 
T Consensus       199 ~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d----------~~g~TpLh~A~~~~~~~~iv~~L-----------l~-  256 (477)
T PHA02878        199 KTNNSPLHHAVKHYNKPIVHILLENGASTDARD----------KCGNTPLHISVGYCKDYDILKLL-----------LE-  256 (477)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCC----------CCCCCHHHHHHHhcCCHHHHHHH-----------HH-
Confidence            999999999999999999999999999984433          8999999999975 566776665           11 


Q ss_pred             hcccchHHhhcc-CCCCchhhh
Q 043183          300 VVQRGFAEAKNR-EGLTPRALF  320 (564)
Q Consensus       300 ~~~~~~~~~~n~-~g~t~~dl~  320 (564)
                        .....+.++. .|.||..+.
T Consensus       257 --~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        257 --HGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             --cCCCCCccCCCCCCCHHHHH
Confidence              1222333333 689998775

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=1.3e-26  Score=257.74  Aligned_cols=230  Identities=19%  Similarity=0.158  Sum_probs=187.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183            3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML   82 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A   82 (564)
                      ..|.||+|.|+.+|..+.++.++.++.. . +..+..|.||||.|+..++.++|+.+++.  +.+.+.++..|.||+|+|
T Consensus       372 ~k~~~pl~la~~~g~~~~v~Lll~~ga~-~-~~~gk~gvTplh~aa~~~~~~~v~l~l~~--gA~~~~~~~lG~T~lhva  447 (1143)
T KOG4177|consen  372 EKGFTPLHLAVKSGRVSVVELLLEAGAD-P-NSAGKNGVTPLHVAAHYGNPRVVKLLLKR--GASPNAKAKLGYTPLHVA  447 (1143)
T ss_pred             ccCCcchhhhcccCchhHHHhhhhccCC-c-ccCCCCCcceeeehhhccCcceEEEEecc--CCChhhHhhcCCChhhhh
Confidence            4577788888888888888887777655 2 44577778888888888888888888776  556777888899999999


Q ss_pred             HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH-------------------cccCCHHHHHHH
Q 043183           83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS-------------------MNMLLPDVALQL  138 (564)
Q Consensus        83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-------------------~~~~~~~i~~~L  138 (564)
                      + ..|     -.++...+..++..-..|.||||+|+..|+.+++..|++                   ...+....+..+
T Consensus       448 a-~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l  526 (1143)
T KOG4177|consen  448 A-KKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKIL  526 (1143)
T ss_pred             h-hcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHH
Confidence            9 777     233334455577788899999999999999999999988                   234455677777


Q ss_pred             HHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhh
Q 043183          139 CRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISR  218 (564)
Q Consensus       139 l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~  218 (564)
                      ++.+... +.++..|.||||.|+..|+.                                .+|++|++     ++++.+.
T Consensus       527 ~~~ga~v-~~~~~r~~TpLh~A~~~g~v--------------------------------~~VkfLLe-----~gAdv~a  568 (1143)
T KOG4177|consen  527 LEHGANV-DLRTGRGYTPLHVAVHYGNV--------------------------------DLVKFLLE-----HGADVNA  568 (1143)
T ss_pred             hhcCCce-ehhcccccchHHHHHhcCCc--------------------------------hHHHHhhh-----CCccccc
Confidence            7777665 78899999999999999976                                67777654     6778889


Q ss_pred             hhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          219 LISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       219 ~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      +|+.|+||||.||..|+.+++++|+++|+++...+          .+|.||||+|+..|+.++++.+
T Consensus       569 k~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d----------~~g~TpL~iA~~lg~~~~~k~l  625 (1143)
T KOG4177|consen  569 KDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAAD----------LDGFTPLHIAVRLGYLSVVKLL  625 (1143)
T ss_pred             cCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccc----------ccCcchhHHHHHhcccchhhHH
Confidence            99999999999999999999999999999985444          8999999999999999988775

>PHA02798 ankyrin-like protein; Provisional

Probab=99.92  E-value=9.9e-25  Score=235.73  Aligned_cols=204  Identities=14%  Similarity=0.074  Sum_probs=167.5

Q ss_pred             CCCCCcHHHHHHHc-----CCHHHHHHHHHhCccccccccCCCCChHHHHHHhcC---CHHHHHHHHHcCCcccccCCCC
Q 043183            2 TRSRRLQTYRAALN-----GDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGK---YIEFLKELVKIMEAEDLAKPNK   73 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~-----G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g---~~~iv~~Ll~~~~~~~l~~~d~   73 (564)
                      |..|.||||.|+..     ++.++++.|++.+.+ + ...|.+|.||||+|+..+   +.+++++|++.  +++++.+|.
T Consensus        68 d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad-i-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~--Gadvn~~d~  143 (489)
T PHA02798         68 DNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD-I-NKKNSDGETPLYCLLSNGYINNLEILLFMIEN--GADTTLLDK  143 (489)
T ss_pred             CCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC-C-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHc--CCCccccCC
Confidence            45799999999864     779999999999876 3 446889999999999986   78999999998  678899999


Q ss_pred             CCCcHHHHHHHhch--------HHHHhcCcccccccCCCCCcHHHHHHHc----CCCchHHHHHHcc-------------
Q 043183           74 HGGTALSMLLHLEG--------RVMMKHNRSIAMVRDHNQTLPIDVAASL----GHKDMPICMVSMN-------------  128 (564)
Q Consensus        74 ~G~TpLH~Aa~~~G--------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~----g~~~iv~~Ll~~~-------------  128 (564)
                      .|.||||+|+ +.|        +.|++.+.+.....+..|.||||.++..    ++.+++++|++..             
T Consensus       144 ~g~tpL~~a~-~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~  222 (489)
T PHA02798        144 DGFTMLQVYL-QSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKK  222 (489)
T ss_pred             CCCcHHHHHH-HcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccch
Confidence            9999999999 776        7888888665444456799999999764    4789999998721             


Q ss_pred             -------------cCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHH
Q 043183          129 -------------MLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRL  195 (564)
Q Consensus       129 -------------~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~  195 (564)
                                   ....+++..|+. +. .++.+|..|+||||+|+..|+.                             
T Consensus       223 ~~~~l~~l~~~~~~~~~~i~~~l~~-~~-dvN~~d~~G~TPL~~A~~~~~~-----------------------------  271 (489)
T PHA02798        223 FMEYLNSLLYDNKRFKKNILDFIFS-YI-DINQVDELGFNPLYYSVSHNNR-----------------------------  271 (489)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHh-cC-CCCCcCcCCccHHHHHHHcCcH-----------------------------
Confidence                         112344444443 43 4588999999999999999865                             


Q ss_pred             hHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183          196 QALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNL  249 (564)
Q Consensus       196 ~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~  249 (564)
                         ++++.|++     .+++++.+|..|+||||.|+.+|+.++++.|++.+|+.
T Consensus       272 ---~~v~~LL~-----~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        272 ---KIFEYLLQ-----LGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNK  317 (489)
T ss_pred             ---HHHHHHHH-----cCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCH
Confidence               56666644     56788999999999999999999999999999999997

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.92  E-value=1.3e-24  Score=235.13  Aligned_cols=202  Identities=12%  Similarity=0.045  Sum_probs=164.1

Q ss_pred             CCCcHHHHHHHcC------CHHHHHHHHHhCccccccccCCCCChHHHHHHhc---CCHHHHHHHHHcCCcccc-cCCCC
Q 043183            4 SRRLQTYRAALNG------DWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAG---KYIEFLKELVKIMEAEDL-AKPNK   73 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G------~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~l-~~~d~   73 (564)
                      .+.||||.|+..+      +.++++.|++.+.+ + ...|..|.||||.|+..   |+.++|++|++.  ++++ +.+|.
T Consensus        68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gad-i-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~--Gadin~~~d~  143 (494)
T PHA02989         68 YIETPLCAVLRNREITSNKIKKIVKLLLKFGAD-I-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSK--GINVNDVKNS  143 (494)
T ss_pred             CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCC-C-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHC--CCCcccccCC
Confidence            3689999998765      47899999999876 3 44688999999998865   679999999998  6788 78999


Q ss_pred             CCCcHHHHHHHhch-------HHHHhcCcccccccCCCCCcHHHHHHHcC----CCchHHHHHHcc--------------
Q 043183           74 HGGTALSMLLHLEG-------RVMMKHNRSIAMVRDHNQTLPIDVAASLG----HKDMPICMVSMN--------------  128 (564)
Q Consensus        74 ~G~TpLH~Aa~~~G-------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g----~~~iv~~Ll~~~--------------  128 (564)
                      .|.||||+|+ ..+       +.|++.+.+.....+..|.||||.|+..+    +.+++++|++..              
T Consensus       144 ~g~tpLh~a~-~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l  222 (494)
T PHA02989        144 RGYNLLHMYL-ESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVL  222 (494)
T ss_pred             CCCCHHHHHH-HhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHH
Confidence            9999999998 653       88999887754446888999999998764    889999999821              


Q ss_pred             -----------cCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhH
Q 043183          129 -----------MLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQA  197 (564)
Q Consensus       129 -----------~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~  197 (564)
                                 .+..++++.|+. + ..++.+|.+|+||||+|+..|+.                               
T Consensus       223 ~~~~~~~~~~~~~~~~il~~l~~-~-advn~~d~~G~TpL~~Aa~~~~~-------------------------------  269 (494)
T PHA02989        223 ESFLDNNKILSKKEFKVLNFILK-Y-IKINKKDKKGFNPLLISAKVDNY-------------------------------  269 (494)
T ss_pred             HHHHHhchhhcccchHHHHHHHh-C-CCCCCCCCCCCCHHHHHHHhcCH-------------------------------
Confidence                       112345554443 4 44588999999999999999864                               


Q ss_pred             HHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183          198 LKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNL  249 (564)
Q Consensus       198 ~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~  249 (564)
                       ++++.|++     .+++++.+|..|.||||+|+..|+.++++.||+.+|..
T Consensus       270 -~~v~~LL~-----~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        270 -EAFNYLLK-----LGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             -HHHHHHHH-----cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCh
Confidence             56666644     46788999999999999999999999999999988764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.91  E-value=5.1e-24  Score=234.62  Aligned_cols=254  Identities=13%  Similarity=0.059  Sum_probs=163.4

Q ss_pred             CCCCCcHHHHHH--HcCCHHHHHHHHHhCcccccc--ccCCCC-----------ChHHHHHHh-----------cCCHHH
Q 043183            2 TRSRRLQTYRAA--LNGDWAVAKSIYDVYEGEIGI--AIAKRG-----------DTALRIAAA-----------GKYIEF   55 (564)
Q Consensus         2 ~~~g~t~Lh~Aa--~~G~~~~v~~Ll~~~~~~l~~--~~~~~g-----------~TpLh~Aa~-----------~g~~~i   55 (564)
                      |..|.||||.|+  ..|+.++++.|++.+.+. +.  ..+..|           .||||+|+.           .++.++
T Consensus       133 d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~ei  211 (661)
T PHA02917        133 CENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEV  211 (661)
T ss_pred             CCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHH
Confidence            456889998653  467899999999887652 11  112223           589998875           457889


Q ss_pred             HHHHHHcCCcccccCCCCCCCcHHHHHHHhch-------HHHHhcCcccc---cccCCCCCcHHHHHHHcC---------
Q 043183           56 LKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-------RVMMKHNRSIA---MVRDHNQTLPIDVAASLG---------  116 (564)
Q Consensus        56 v~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-------~~Ll~~~~~~~---~~~d~~G~TpLh~Aa~~g---------  116 (564)
                      |++|++.  +.+++.+|.+|.||||+|+ ..|       +.|++ +.+..   ...|..|.+|+|+|+..+         
T Consensus       212 v~~Li~~--Gadvn~~d~~G~TpLh~A~-~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v  287 (661)
T PHA02917        212 VKCLINH--GIKPSSIDKNYCTALQYYI-KSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDV  287 (661)
T ss_pred             HHHHHHC--CCCcccCCCCCCcHHHHHH-HcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccc
Confidence            9999988  6678888889999999998 877       44543 43322   234556677777777311         


Q ss_pred             CCchHHHHHHcc-----------------------------------------cC--CHHHHHHHHHcCCc---------
Q 043183          117 HKDMPICMVSMN-----------------------------------------ML--LPDVALQLCRDRPK---------  144 (564)
Q Consensus       117 ~~~iv~~Ll~~~-----------------------------------------~~--~~~i~~~Ll~~~~~---------  144 (564)
                      +.+++++|++..                                         .+  ..++++.|++.+++         
T Consensus       288 ~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~  367 (661)
T PHA02917        288 DLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGY  367 (661)
T ss_pred             hHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCcccc
Confidence            345555555511                                         01  12244445444432         


Q ss_pred             --------------------cccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHH-HhHHHHHHH
Q 043183          145 --------------------LATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQR-LQALKLVER  203 (564)
Q Consensus       145 --------------------~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~-~~~~~lv~~  203 (564)
                                          .....|.+|+||||.|++.+.....|.          .+.....|.++.+ ....++++.
T Consensus       368 ~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~  437 (661)
T PHA02917        368 FRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFY----------TYTYKKGLCDMSYACPILSTINI  437 (661)
T ss_pred             chhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhh----------hhhhhhccchhhhhhhhHHHHHH
Confidence                                223345579999999987664311111          0000111222211 112344544


Q ss_pred             HHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHh-cCCCCcc
Q 043183          204 LCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAM-LPPQDRL  282 (564)
Q Consensus       204 l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~-~~~~~~~  282 (564)
                      |     ...+++++.+|..|.||||+|+..++.+++++|+++|+++....          ..|+||||+|+. .++.+++
T Consensus       438 L-----l~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d----------~~G~T~L~~A~~~~~~~~iv  502 (661)
T PHA02917        438 C-----LPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRS----------NNGYTCIAIAINESRNIELL  502 (661)
T ss_pred             H-----HHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCC----------CCCCCHHHHHHHhCCCHHHH
Confidence            4     34667889999999999999999999999999999999984433          899999999996 6677776


Q ss_pred             ccc
Q 043183          283 NIV  285 (564)
Q Consensus       283 ~~l  285 (564)
                      +++
T Consensus       503 ~~L  505 (661)
T PHA02917        503 KML  505 (661)
T ss_pred             HHH
Confidence            665

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=3.2e-24  Score=238.92  Aligned_cols=266  Identities=18%  Similarity=0.168  Sum_probs=160.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |.+|.||||.|+..|+.+++..++.++...  ...+..|.||||.||..+..+++++|++.  +.++..++....||+|+
T Consensus       239 d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~--~~~~vr~~tplh~AA~~~~~e~~~~ll~~--ga~~~~~~~~~kt~l~~  314 (1143)
T KOG4177|consen  239 DESGLTPLHVAAFMGHLDIVKLLLQHGASV--NVSTVRGETPLHMAARAGQVEVCKLLLQN--GADVLAKARDDQTPLHI  314 (1143)
T ss_pred             cccCccHHHHHHhccchhHHHHHHhccccc--CcccccccCcchhhhccchhhhHhhhhcc--CcccccccccccChhhh
Confidence            567888888888888888888888876653  33577888888888888888888888877  44555556666666666


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH-------------------cccCCHHHHHH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS-------------------MNMLLPDVALQ  137 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-------------------~~~~~~~i~~~  137 (564)
                      |. +.|     +.+++.+ ..++..+..|.||||+++..++.++..+|..                   ...+..++++.
T Consensus       315 a~-~~g~~~i~~~~l~~~-~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~L  392 (1143)
T KOG4177|consen  315 AS-RLGHEEIVHLLLQAG-ATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVEL  392 (1143)
T ss_pred             hc-ccchHHHHHHHhhcc-CCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHh
Confidence            66 555     2222222 2334444555555555555555554444433                   23344444444


Q ss_pred             HHHcCCcc--------------------------------ccccCCCCCcHHHHHHhCCC-CC-----cccccc----cc
Q 043183          138 LCRDRPKL--------------------------------ATLRAGDCETPLHALARKNL-TS-----SNFINQ----NQ  175 (564)
Q Consensus       138 Ll~~~~~~--------------------------------~~~~d~~G~TpLh~Aa~~g~-~~-----~~f~~~----~~  175 (564)
                      +++++.+.                                .+..|..|.||+|+|+..|+ .+     ..+...    ..
T Consensus       393 ll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~  472 (1143)
T KOG4177|consen  393 LLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSK  472 (1143)
T ss_pred             hhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhcc
Confidence            44444331                                14445555555555555551 11     000000    00


Q ss_pred             cchHHHHhhhcCCcHHHHHH----------------------hHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHc
Q 043183          176 RGIFRRCFNLGAEDVEVQRL----------------------QALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQ  233 (564)
Q Consensus       176 ~~~~~~~~~~~~~h~~v~~~----------------------~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~  233 (564)
                      .+.....+.....|.+++..                      ...+-+...  ..+...+.+.+.++..|.||||.||..
T Consensus       473 ~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~--~~l~~~ga~v~~~~~r~~TpLh~A~~~  550 (1143)
T KOG4177|consen  473 QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVA--KILLEHGANVDLRTGRGYTPLHVAVHY  550 (1143)
T ss_pred             ccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHH--HHHhhcCCceehhcccccchHHHHHhc
Confidence            00000000111122222220                      000111111  123345567788899999999999999


Q ss_pred             CCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          234 GNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       234 g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      |+.++|++||++++++...+          +.|+||||.|+..|+.+++.+|
T Consensus       551 g~v~~VkfLLe~gAdv~ak~----------~~G~TPLH~Aa~~G~~~i~~LL  592 (1143)
T KOG4177|consen  551 GNVDLVKFLLEHGADVNAKD----------KLGYTPLHQAAQQGHNDIAELL  592 (1143)
T ss_pred             CCchHHHHhhhCCccccccC----------CCCCChhhHHHHcChHHHHHHH
Confidence            99999999999999996655          9999999999999999998887

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=9.4e-24  Score=209.36  Aligned_cols=116  Identities=21%  Similarity=0.283  Sum_probs=102.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      ...|||-.||..|+.++|++|++++.+.  ...|..|.|.||+||..||.+|+++|++.  ++|++.++..|+|+||.|+
T Consensus       116 TNStPLraACfDG~leivKyLvE~gad~--~IanrhGhTcLmIa~ykGh~~I~qyLle~--gADvn~ks~kGNTALH~ca  191 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVEHGADP--EIANRHGHTCLMIACYKGHVDIAQYLLEQ--GADVNAKSYKGNTALHDCA  191 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHHcCCCC--cccccCCCeeEEeeeccCchHHHHHHHHh--CCCcchhcccCchHHHhhh
Confidence            4569999999999999999999887763  44689999999999999999999999999  7889999999999999999


Q ss_pred             Hhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           84 HLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        84 ~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                       +.|     +.|+.++..  ...|..|.|||..|+..|+.++|++|++
T Consensus       192 -EsG~vdivq~Ll~~ga~--i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  192 -ESGSVDIVQLLLKHGAK--IDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             -hcccHHHHHHHHhCCce--eeecCCCCchHHHHhhhcchHHHHHHhc
Confidence             999     888888754  3467789999999999999999999994

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.6e-23  Score=200.00  Aligned_cols=171  Identities=11%  Similarity=-0.020  Sum_probs=137.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcC--CHHHHHHHHHcCCcccccCCC-CCCCcHH
Q 043183            3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGK--YIEFLKELVKIMEAEDLAKPN-KHGGTAL   79 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~~~~l~~~d-~~G~TpL   79 (564)
                      .+++||||.|++.|+.+.|+.|++..     ...|..|.||||+|+..+  +.+++++|++.  +.+++.++ ..|.|||
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~~-----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~--gadvn~~~~~~g~TpL   91 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKFV-----NDCNDLYETPIFSCLEKDKVNVEILKFLIEN--GADVNFKTRDNNLSAL   91 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHhh-----hccCccCCCHHHHHHHcCCCCHHHHHHHHHC--CCCCCccCCCCCCCHH
Confidence            46899999999999999999999752     335889999999999855  89999999998  67888887 4899999


Q ss_pred             HHHHHhc---h-----HHHHhcCcccccccCCCCCcHHHHHHH--cCCCchHHHHHHcccCCHHHHHHHHHcCCcccccc
Q 043183           80 SMLLHLE---G-----RVMMKHNRSIAMVRDHNQTLPIDVAAS--LGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLR  149 (564)
Q Consensus        80 H~Aa~~~---G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~--~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~  149 (564)
                      |+|+ ..   +     +.|++.+.+ ++.+|..|.||||+|+.  .++.+++++|+              +.+.+. +.+
T Consensus        92 h~a~-~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li--------------~~gadi-n~~  154 (209)
T PHA02859         92 HHYL-SFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLI--------------DSGVSF-LNK  154 (209)
T ss_pred             HHHH-HhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHH--------------HcCCCc-ccc
Confidence            9988 53   2     677777755 57889999999999986  35677888775              455444 778


Q ss_pred             CCCCCcHHHHH-HhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHH
Q 043183          150 AGDCETPLHAL-ARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIF  228 (564)
Q Consensus       150 d~~G~TpLh~A-a~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh  228 (564)
                      |.+|.||||.+ +..++.                                ++++.|++     .+.+++.+|..|.||||
T Consensus       155 d~~g~t~Lh~~a~~~~~~--------------------------------~iv~~Ll~-----~Gadi~~~d~~g~tpl~  197 (209)
T PHA02859        155 DFDNNNILYSYILFHSDK--------------------------------KIFDFLTS-----LGIDINETNKSGYNCYD  197 (209)
T ss_pred             cCCCCcHHHHHHHhcCCH--------------------------------HHHHHHHH-----cCCCCCCCCCCCCCHHH
Confidence            99999999964 555533                                56666644     45678889999999999


Q ss_pred             HHHHcC
Q 043183          229 DAAKQG  234 (564)
Q Consensus       229 ~Aa~~g  234 (564)
                      +|+.++
T Consensus       198 la~~~~  203 (209)
T PHA02859        198 LIKFRN  203 (209)
T ss_pred             HHhhhh
Confidence            999765

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=3.2e-23  Score=222.97  Aligned_cols=260  Identities=12%  Similarity=0.079  Sum_probs=174.4

Q ss_pred             CCCCCcHHHHHHHcC--CHHHHHHHHHhCccccccccC-----------------------------------------C
Q 043183            2 TRSRRLQTYRAALNG--DWAVAKSIYDVYEGEIGIAIA-----------------------------------------K   38 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G--~~~~v~~Ll~~~~~~l~~~~~-----------------------------------------~   38 (564)
                      |..|+||||.|+..|  +.|+|+.|++.+.+.-....+                                         .
T Consensus        74 D~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~  153 (672)
T PHA02730         74 NNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHC  153 (672)
T ss_pred             CCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccc
Confidence            567899999998866  788999998874321000011                                         2


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCccc-c----cCCCCCC-CcHHHHHHHhch-----------HHHHhcCccccccc
Q 043183           39 RGDTALRIAAAGKYIEFLKELVKIMEAED-L----AKPNKHG-GTALSMLLHLEG-----------RVMMKHNRSIAMVR  101 (564)
Q Consensus        39 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~-l----~~~d~~G-~TpLH~Aa~~~G-----------~~Ll~~~~~~~~~~  101 (564)
                      .|.+|+++|+..++.|+|++|++.+.... .    ...|..+ .|.||++. ...           +.|++++.+ ++.+
T Consensus       154 ~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~i-l~~~~~~~n~~eiv~lLIs~Gad-IN~k  231 (672)
T PHA02730        154 LGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYI-LSHRESESLSKDVIKCLIDNNVS-IHGR  231 (672)
T ss_pred             cchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHH-HhhhhhhccCHHHHHHHHHCCCC-CCCC
Confidence            45666667766777777777776643221 0    1123333 35566555 442           777777754 5788


Q ss_pred             CCCCCcHHHH--HHHcCCCchHHHHHH--------------------------------------c--------------
Q 043183          102 DHNQTLPIDV--AASLGHKDMPICMVS--------------------------------------M--------------  127 (564)
Q Consensus       102 d~~G~TpLh~--Aa~~g~~~iv~~Ll~--------------------------------------~--------------  127 (564)
                      |..|+||||+  |+..|+.|+|++|++                                      +              
T Consensus       232 d~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  311 (672)
T PHA02730        232 DEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDV  311 (672)
T ss_pred             CCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhh
Confidence            9999999995  556677999999987                                      0              


Q ss_pred             ------------------------------------------c-cCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCC
Q 043183          128 ------------------------------------------N-MLLPDVALQLCRDRPKLATLRAGDCETPLHALARKN  164 (564)
Q Consensus       128 ------------------------------------------~-~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g  164 (564)
                                                                . .-+.++++.|++++.+.. . +.+|.||||+|+..+
T Consensus       312 ~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN-~-k~~G~TpLH~Aa~~n  389 (672)
T PHA02730        312 MRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMD-K-TTDNNYPLHDYFVNN  389 (672)
T ss_pred             hhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCC-c-CCCCCcHHHHHHHHc
Confidence                                                      0 124567888888887764 3 478999999999877


Q ss_pred             CCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCCh-hhHhhhhcCCchHHHH---HHHcC------
Q 043183          165 LTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSD-SEISRLISKPGALIFD---AAKQG------  234 (564)
Q Consensus       165 ~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~-~~~~~~d~~G~TpLh~---Aa~~g------  234 (564)
                      +.                      .      ...++++.|+.    .++ .+++.+|..|.||||.   |...+      
T Consensus       390 nn----------------------~------i~~eIvelLIs----~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~  437 (672)
T PHA02730        390 NN----------------------I------VDVNVVRFIVE----NNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCY  437 (672)
T ss_pred             CC----------------------c------chHHHHHHHHH----cCCCccccccccCCCchHhHHHHHHhcccccccc
Confidence            41                      0      01367777654    222 3678889999999994   43332      


Q ss_pred             ---CHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhcc
Q 043183          235 ---NVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNR  311 (564)
Q Consensus       235 ---~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~  311 (564)
                         ..+++++|+++|+++....          ..|+||||+|+..++.+++++|-           +   .....+.++.
T Consensus       438 e~~~~~ivk~LIs~GADINakD----------~~G~TPLh~Aa~~~~~eive~LI-----------~---~GAdIN~~d~  493 (672)
T PHA02730        438 ETILIDVFDILSKYMDDIDMID----------NENKTLLYYAVDVNNIQFARRLL-----------E---YGASVNTTSR  493 (672)
T ss_pred             chhHHHHHHHHHhcccchhccC----------CCCCCHHHHHHHhCCHHHHHHHH-----------H---CCCCCCCCCC
Confidence               2357999999999984333          89999999999999988877761           1   2234455665


Q ss_pred             -CCCCchhhhH
Q 043183          312 -EGLTPRALFT  321 (564)
Q Consensus       312 -~g~t~~dl~~  321 (564)
                       .|.||.....
T Consensus       494 ~~g~TaL~~Aa  504 (672)
T PHA02730        494 SIINTAIQKSS  504 (672)
T ss_pred             cCCcCHHHHHH
Confidence             5899987654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.4e-23  Score=200.48  Aligned_cols=175  Identities=12%  Similarity=0.088  Sum_probs=139.2

Q ss_pred             cCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-------HHHHhcCcccccccC-CCCCc
Q 043183           36 IAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-------RVMMKHNRSIAMVRD-HNQTL  107 (564)
Q Consensus        36 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-------~~Ll~~~~~~~~~~d-~~G~T  107 (564)
                      ....+.||||.|+..|+.++|+.|++.     .+..|..|.||||+|+ ..+       +.|++.+.++ +.++ ..|.|
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~-~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~T   89 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCL-EKDKVNVEILKFLIENGADV-NFKTRDNNLS   89 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHH-HcCCCCHHHHHHHHHCCCCC-CccCCCCCCC
Confidence            456789999999999999999999975     3457899999999999 754       8888888765 5554 58999


Q ss_pred             HHHHHHHc---CCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhh
Q 043183          108 PIDVAASL---GHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFN  184 (564)
Q Consensus       108 pLh~Aa~~---g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~  184 (564)
                      |||+|+..   ++.+++++|+              +++.+. +.+|.+|.||||+|+...+.                  
T Consensus        90 pLh~a~~~~~~~~~eiv~~Ll--------------~~gadi-n~~d~~G~TpLh~a~~~~~~------------------  136 (209)
T PHA02859         90 ALHHYLSFNKNVEPEILKILI--------------DSGSSI-TEEDEDGKNLLHMYMCNFNV------------------  136 (209)
T ss_pred             HHHHHHHhCccccHHHHHHHH--------------HCCCCC-CCcCCCCCCHHHHHHHhccC------------------
Confidence            99998864   3567777764              455544 88999999999999865322                  


Q ss_pred             hcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHH-HHHcCCHHHHHHHHHhCCCcccccccccchHHHh
Q 043183          185 LGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFD-AAKQGNVGFLLILTREYPNLHISYRRFESSGAHL  263 (564)
Q Consensus       185 ~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~-Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~  263 (564)
                          +        .++++.|++     .+.+++.+|.+|.||||. |+..++.+++++|+++|+++....          
T Consensus       137 ----~--------~~iv~~Li~-----~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d----------  189 (209)
T PHA02859        137 ----R--------INVIKLLID-----SGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETN----------  189 (209)
T ss_pred             ----C--------HHHHHHHHH-----cCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCC----------
Confidence                1        256666644     456788899999999996 567899999999999999885443          


Q ss_pred             hcCCchHHHHHhcC
Q 043183          264 QTRNNILHLAAMLP  277 (564)
Q Consensus       264 ~~G~TpLhlAa~~~  277 (564)
                      ..|+||||+|...+
T Consensus       190 ~~g~tpl~la~~~~  203 (209)
T PHA02859        190 KSGYNCYDLIKFRN  203 (209)
T ss_pred             CCCCCHHHHHhhhh
Confidence            89999999998655

>PF13962 PGG: Domain of unknown function

Probab=99.90  E-value=1.5e-23  Score=179.18  Aligned_cols=109  Identities=42%  Similarity=0.682  Sum_probs=95.8

Q ss_pred             hHHHHHhhhhhHHHHHHHHHhhhhhhcccCCCCCCC---CCcccccccccccc-hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043183          332 EKWMKDTATSCMFVATLIATVVFVAAFTVPRSNRED---TGFPFFLEKFSENF-SFKIFAISDAISLVSSSASVVNFLSI  407 (564)
Q Consensus       332 ~~~~~~~~~s~~vvA~LiatvtFaa~ft~PGg~~~~---~G~~~l~~~~~~~~-~f~~F~~~~~~a~~~S~~~~~~~~~~  407 (564)
                      +||++++++++++||+|||||||+|+|+||||++|+   .|+|++.++    + .|++|+++|++||++|+++++++++.
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~----~~~f~~F~~~nt~af~~S~~~i~~l~~~   76 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKK----PSAFKAFLISNTIAFFSSLAAIFLLISG   76 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccc----cchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999876   699999977    7 99999999999999999999887732


Q ss_pred             cCccchhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 043183          408 LTPRYAEEDFLRLLPRKLLLGLATLFISVAAMMVVFSTTFFIL  450 (564)
Q Consensus       408 ~~~~~~~~~~~~~l~~~l~~~~~~l~~s~~~m~~af~~~~~~v  450 (564)
                      +      .++.+..++.+.++..++++++.+|++||++|+|+|
T Consensus        77 ~------~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   77 L------DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            2      234455556677888999999999999999999975

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=1e-21  Score=222.72  Aligned_cols=220  Identities=17%  Similarity=0.062  Sum_probs=159.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHH-HHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALR-IAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML   82 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh-~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A   82 (564)
                      .++.+++.||+.|+.+.++.+++..+..-.+..|..|.|||| .|+.+++.++++.|++.+.      .+..|.||||.|
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T~Lh~A   89 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDTLLHAI   89 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChHHHHHH
Confidence            356889999999999999999988432111345789999999 9999999999999998842      688999999999


Q ss_pred             HHhch----HHHH----hcCcc-----cc----cccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCcc
Q 043183           83 LHLEG----RVMM----KHNRS-----IA----MVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKL  145 (564)
Q Consensus        83 a~~~G----~~Ll----~~~~~-----~~----~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~  145 (564)
                      + ..+    +.++    ...++     ..    ...+..|.||||+||..|+.+++++|++              ++.+.
T Consensus        90 ~-~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~--------------~GAdv  154 (743)
T TIGR00870        90 S-LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLE--------------RGASV  154 (743)
T ss_pred             H-hccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHh--------------CCCCC
Confidence            9 743    2232    22221     11    1223569999999999999999999975              32222


Q ss_pred             cc-------------ccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCC
Q 043183          146 AT-------------LRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLS  212 (564)
Q Consensus       146 ~~-------------~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~  212 (564)
                      ..             .....|+||||.|+..|+.                                ++++.++     .+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~--------------------------------~iv~lLl-----~~  197 (743)
T TIGR00870       155 PARACGDFFVKSQGVDSFYHGESPLNAAACLGSP--------------------------------SIVALLS-----ED  197 (743)
T ss_pred             CcCcCCchhhcCCCCCcccccccHHHHHHHhCCH--------------------------------HHHHHHh-----cC
Confidence            10             1124699999999999865                                5565543     46


Q ss_pred             hhhHhhhhcCCchHHHHHHHcC---------CHHHHHHHHHhCCCcccccccccchHHHh-hcCCchHHHHHhcCCCCcc
Q 043183          213 DSEISRLISKPGALIFDAAKQG---------NVGFLLILTREYPNLHISYRRFESSGAHL-QTRNNILHLAAMLPPQDRL  282 (564)
Q Consensus       213 ~~~~~~~d~~G~TpLh~Aa~~g---------~~~iv~~LL~~~~~~~~~~~r~~~i~n~~-~~G~TpLhlAa~~~~~~~~  282 (564)
                      +++++.+|..|+||||+|+..+         ...+.+++++.+.......    .+.++. ++|.||||+|+..|+.+++
T Consensus       198 gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~----el~~i~N~~g~TPL~~A~~~g~~~l~  273 (743)
T TIGR00870       198 PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSK----ELEVILNHQGLTPLKLAAKEGRIVLF  273 (743)
T ss_pred             CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChH----hhhhhcCCCCCCchhhhhhcCCccHH
Confidence            7789999999999999999987         2345556665544431110    000222 8999999999999999988


Q ss_pred             ccc
Q 043183          283 NIV  285 (564)
Q Consensus       283 ~~l  285 (564)
                      +.+
T Consensus       274 ~lL  276 (743)
T TIGR00870       274 RLK  276 (743)
T ss_pred             HHH
Confidence            876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.90  E-value=9.3e-23  Score=217.14  Aligned_cols=224  Identities=9%  Similarity=0.077  Sum_probs=171.7

Q ss_pred             CCCCcHHHHH-HHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHh-cCCHHHHHHHHHcCCcc--------------
Q 043183            3 RSRRLQTYRA-ALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAA-GKYIEFLKELVKIMEAE--------------   66 (564)
Q Consensus         3 ~~g~t~Lh~A-a~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~-~g~~~iv~~Ll~~~~~~--------------   66 (564)
                      .+|.+++|.- ...|++|+|+.|++++.+ ++ ..+..|.||||+|+. .++.|++++|++.+.+.              
T Consensus        69 ~~~~~~~~~~~s~n~~lElvk~LI~~GAd-vN-~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~  146 (631)
T PHA02792         69 INDFDIFEYLCSDNIDIELLKLLISKGLE-IN-SIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQ  146 (631)
T ss_pred             cCCccHHHHHHHhcccHHHHHHHHHcCCC-cc-cccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhh
Confidence            4577788654 667899999999999776 43 346678999999976 69999999999997420              


Q ss_pred             --------------------cccCCCCCCCcHHHHHHHhch------------HHHHhcCcccccccCCCCCcHHHHHHH
Q 043183           67 --------------------DLAKPNKHGGTALSMLLHLEG------------RVMMKHNRSIAMVRDHNQTLPIDVAAS  114 (564)
Q Consensus        67 --------------------~l~~~d~~G~TpLH~Aa~~~G------------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~  114 (564)
                                          .++.+|..|.||||+|+ ..+            ++|++++.+ ++..|..|.||||+|+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i-~~~s~~~~~~~~~v~k~Li~~g~~-~~~~d~~g~t~l~~~~~  224 (631)
T PHA02792        147 ITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYI-ITRSQDGYATSLDVINYLISHEKE-MRYYTYREHTTLYYYVD  224 (631)
T ss_pred             cccccccchhhhccccccccccccCCCCCCchHHHHH-hhCCcccccCCHHHHHHHHhCCCC-cCccCCCCChHHHHHHH
Confidence                                13467888999999999 554            788888866 46678889999999999


Q ss_pred             cC--CCchHHHHHH------------------------------------------------------------------
Q 043183          115 LG--HKDMPICMVS------------------------------------------------------------------  126 (564)
Q Consensus       115 ~g--~~~iv~~Ll~------------------------------------------------------------------  126 (564)
                      +.  ..|++++|++                                                                  
T Consensus       225 ~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  304 (631)
T PHA02792        225 KCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTD  304 (631)
T ss_pred             cccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhH
Confidence            99  7899999987                                                                  


Q ss_pred             ------------------------------------------cccCCHHHHHHHHHcCCccccccCCCC--CcHHHHHHh
Q 043183          127 ------------------------------------------MNMLLPDVALQLCRDRPKLATLRAGDC--ETPLHALAR  162 (564)
Q Consensus       127 ------------------------------------------~~~~~~~i~~~Ll~~~~~~~~~~d~~G--~TpLh~Aa~  162 (564)
                                                                +..++.++++.|++.+++. +.+|.+|  .||||+|+.
T Consensus       305 ~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~  383 (631)
T PHA02792        305 SIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLS  383 (631)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHH
Confidence                                                      1345566777777766554 4455553  577776655


Q ss_pred             CCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHH
Q 043183          163 KNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLIL  242 (564)
Q Consensus       163 ~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~L  242 (564)
                      ....                             ...++++.++     ..+++++.+|..|.||||+|+..++.+++++|
T Consensus       384 n~~~-----------------------------~v~~IlklLI-----s~GADIN~kD~~G~TPLh~Aa~~~n~eivelL  429 (631)
T PHA02792        384 IHES-----------------------------DVLSILKLCK-----PYIDDINKIDKHGRSILYYCIESHSVSLVEWL  429 (631)
T ss_pred             hccH-----------------------------hHHHHHHHHH-----hcCCccccccccCcchHHHHHHcCCHHHHHHH
Confidence            4421                             1123444432     35668899999999999999999999999999


Q ss_pred             HHhCCCcccccccccchHHHhhcCCchHHHHHh
Q 043183          243 TREYPNLHISYRRFESSGAHLQTRNNILHLAAM  275 (564)
Q Consensus       243 L~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~  275 (564)
                      +++|+++....          ..|+||||+|+.
T Consensus       430 Ls~GADIN~kD----------~~G~TpL~~A~~  452 (631)
T PHA02792        430 IDNGADINITT----------KYGSTCIGICVI  452 (631)
T ss_pred             HHCCCCCCCcC----------CCCCCHHHHHHH
Confidence            99999984433          899999999976

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=2.1e-23  Score=206.85  Aligned_cols=210  Identities=17%  Similarity=0.201  Sum_probs=172.3

Q ss_pred             HHHHHcCCHHHHHHHHHhCcc-ccc--cccCCCCChHHHHHHhcCCHHHHHHHHHcCCccc--------ccCCCCCCCcH
Q 043183           10 YRAALNGDWAVAKSIYDVYEG-EIG--IAIAKRGDTALRIAAAGKYIEFLKELVKIMEAED--------LAKPNKHGGTA   78 (564)
Q Consensus        10 h~Aa~~G~~~~v~~Ll~~~~~-~l~--~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~--------l~~~d~~G~Tp   78 (564)
                      ..|++.|.+..+..|+....+ .+.  .....+|.|||-+||++||.++|++|++++ +++        .+-..-.|.+|
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~-~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHC-RASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHh-cCCccCCceEEeCCcccCCCch
Confidence            488999999999888876442 111  112567889999999999999999999975 222        34445678899


Q ss_pred             HHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCC
Q 043183           79 LSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDC  153 (564)
Q Consensus        79 LH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G  153 (564)
                      |..|+ ..|     +.|++++. .++.....+.|||-.||..|+.++|+||++              ++.+. +..|..|
T Consensus        88 LWaAs-aAGHl~vVk~L~~~ga-~VN~tT~TNStPLraACfDG~leivKyLvE--------------~gad~-~IanrhG  150 (615)
T KOG0508|consen   88 LWAAS-AAGHLEVVKLLLRRGA-SVNDTTRTNSTPLRAACFDGHLEIVKYLVE--------------HGADP-EIANRHG  150 (615)
T ss_pred             hhHHh-ccCcHHHHHHHHHhcC-ccccccccCCccHHHHHhcchhHHHHHHHH--------------cCCCC-cccccCC
Confidence            98888 888     88899884 456666667899999999999999999963              55444 8899999


Q ss_pred             CcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHc
Q 043183          154 ETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQ  233 (564)
Q Consensus       154 ~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~  233 (564)
                      .|.||+||++|+.                                +|+++|++     .++++|.++.+|+|+||.|+..
T Consensus       151 hTcLmIa~ykGh~--------------------------------~I~qyLle-----~gADvn~ks~kGNTALH~caEs  193 (615)
T KOG0508|consen  151 HTCLMIACYKGHV--------------------------------DIAQYLLE-----QGADVNAKSYKGNTALHDCAES  193 (615)
T ss_pred             CeeEEeeeccCch--------------------------------HHHHHHHH-----hCCCcchhcccCchHHHhhhhc
Confidence            9999999999955                                56666654     5778999999999999999999


Q ss_pred             CCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          234 GNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       234 g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      |+.|++++|+++++.+...           ..|-|||-.|+..|+.++++.|
T Consensus       194 G~vdivq~Ll~~ga~i~~d-----------~~GmtPL~~Aa~tG~~~iVe~L  234 (615)
T KOG0508|consen  194 GSVDIVQLLLKHGAKIDVD-----------GHGMTPLLLAAVTGHTDIVERL  234 (615)
T ss_pred             ccHHHHHHHHhCCceeeec-----------CCCCchHHHHhhhcchHHHHHH
Confidence            9999999999998876433           6799999999999999998877

>PHA02917 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.3e-22  Score=223.42  Aligned_cols=200  Identities=8%  Similarity=-0.031  Sum_probs=148.9

Q ss_pred             HHHHHHHHHhCccccccccCCCCChHHHHHHhc---CCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-------
Q 043183           18 WAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAG---KYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-------   87 (564)
Q Consensus        18 ~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-------   87 (564)
                      ++.|+.|+.++.. . ...|.+|+||||+|+..   |+.++|++|++.  +++++.+|..|.||||+|+ ..|       
T Consensus        12 ~~~~~~l~~~~~~-~-~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~--ga~v~~~~~~g~TpL~~Aa-~~g~~~v~~~   86 (661)
T PHA02917         12 LDELKQMLRDRDP-N-DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS--GTNPLHKNWRQLTPLEEYT-NSRHVKVNKD   86 (661)
T ss_pred             HHHHHHHHhccCc-c-cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC--CCCccccCCCCCCHHHHHH-HcCChhHHHH
Confidence            5778888865433 2 45689999999998665   889999999998  6678899999999999999 877       


Q ss_pred             --HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCC
Q 043183           88 --RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNL  165 (564)
Q Consensus        88 --~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~  165 (564)
                        +.|++.... .+..|  ..+++|+|+..|+.++|++|++              .+. .++.+|.+|+||||.|+..++
T Consensus        87 ~~~~Ll~~~~~-~n~~~--~~~~~~~a~~~~~~e~vk~Ll~--------------~Ga-din~~d~~g~T~L~~~~a~~~  148 (661)
T PHA02917         87 IAMALLEATGY-SNIND--FNIFSYMKSKNVDVDLIKVLVE--------------HGF-DLSVKCENHRSVIENYVMTDD  148 (661)
T ss_pred             HHHHHHhccCC-CCCCC--cchHHHHHhhcCCHHHHHHHHH--------------cCC-CCCccCCCCccHHHHHHHccC
Confidence              345554332 23332  2377888999999999999863              444 448899999999996554322


Q ss_pred             CCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhc---CC-----------chHHHHHH
Q 043183          166 TSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLIS---KP-----------GALIFDAA  231 (564)
Q Consensus       166 ~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~---~G-----------~TpLh~Aa  231 (564)
                      .                      |.        ++++.|++.     +++++..|.   .|           .||||+|+
T Consensus       149 ~----------------------~~--------eivklLi~~-----Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~  193 (661)
T PHA02917        149 P----------------------VP--------EIIDLFIEN-----GCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYI  193 (661)
T ss_pred             C----------------------CH--------HHHHHHHHc-----CCCccccccccccccccccccccccccHHHHHH
Confidence            1                      22        666667653     444443332   23           69999998


Q ss_pred             H-----------cCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCC--Cccccc
Q 043183          232 K-----------QGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQ--DRLNIV  285 (564)
Q Consensus       232 ~-----------~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~--~~~~~l  285 (564)
                      .           .++.+++++|+++|+++....          .+|+||||+|++.|+.  ++++.|
T Consensus       194 ~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d----------~~G~TpLh~A~~~g~~~~eivk~L  250 (661)
T PHA02917        194 ISHLYSESDTRAYVRPEVVKCLINHGIKPSSID----------KNYCTALQYYIKSSHIDIDIVKLL  250 (661)
T ss_pred             hhcccccccccccCcHHHHHHHHHCCCCcccCC----------CCCCcHHHHHHHcCCCcHHHHHHH
Confidence            6           568999999999999984443          8999999999999986  467665

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.86  E-value=8.2e-22  Score=205.95  Aligned_cols=245  Identities=18%  Similarity=0.150  Sum_probs=191.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCc------------cccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCC
Q 043183            5 RRLQTYRAALNGDWAVAKSIYDVYE------------GEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPN   72 (564)
Q Consensus         5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~------------~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d   72 (564)
                      ..+-|..|++.|+++.+..+|+...            +.. .-+|.+|.|+||.||.+|+.+++++|+++  ...++..|
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~-n~qd~~gfTalhha~Lng~~~is~llle~--ea~ldl~d   79 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSH-NLQDYSGFTLLHHAVLNGQNQISKLLLDY--EALLDLCD   79 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccc-cccCccchhHHHHHHhcCchHHHHHHhcc--hhhhhhhh
Confidence            4567889999999999999998621            112 33577999999999999999999999998  45577788


Q ss_pred             CCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCcccc
Q 043183           73 KHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLAT  147 (564)
Q Consensus        73 ~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~  147 (564)
                      ..|.+|||+|+ ..|     +.++.+. +..+..+.+|.||||.||++||.+++.+|+.              ++ ....
T Consensus        80 ~kg~~plhlaa-w~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~--------------~~-adp~  142 (854)
T KOG0507|consen   80 TKGILPLHLAA-WNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLK--------------KN-ADPF  142 (854)
T ss_pred             ccCcceEEehh-hcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHh--------------cC-CCcc
Confidence            99999999999 999     6666666 6678889999999999999999999999863              33 3446


Q ss_pred             ccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhc-----cCChhhHhhhhcC
Q 043183          148 LRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVA-----LLSDSEISRLISK  222 (564)
Q Consensus       148 ~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l-----~~~~~~~~~~d~~  222 (564)
                      .+|+.+.|+|..|++.|..                                +++..++..-+     ..-+  ...++-.
T Consensus       143 i~nns~~t~ldlA~qfgr~--------------------------------~Vvq~ll~~~~~~~~~~~~~--~~~~~~~  188 (854)
T KOG0507|consen  143 IRNNSKETVLDLASRFGRA--------------------------------EVVQMLLQKKFPVQSSLRVG--DIKRPFP  188 (854)
T ss_pred             ccCcccccHHHHHHHhhhh--------------------------------HHHHHHhhhccchhhcccCC--CCCCCCC
Confidence            7899999999999999965                                34444433211     1111  2234556


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcc
Q 043183          223 PGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQ  302 (564)
Q Consensus       223 G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~  302 (564)
                      +-+|||+|+++|+.++++.|++.|-++...           .+--|+||-|+.+|..+++..|..              .
T Consensus       189 ~~~plHlaakngh~~~~~~ll~ag~din~~-----------t~~gtalheaalcgk~evvr~ll~--------------~  243 (854)
T KOG0507|consen  189 AIYPLHLAAKNGHVECMQALLEAGFDINYT-----------TEDGTALHEAALCGKAEVVRFLLE--------------I  243 (854)
T ss_pred             CcCCcchhhhcchHHHHHHHHhcCCCcccc-----------cccchhhhhHhhcCcchhhhHHHh--------------h
Confidence            789999999999999999999999998443           445599999999999999887621              1


Q ss_pred             cchHHhhccCCCCchhhhHHHhhhhH
Q 043183          303 RGFAEAKNREGLTPRALFTKEHKDLR  328 (564)
Q Consensus       303 ~~~~~~~n~~g~t~~dl~~~~~~~l~  328 (564)
                      ......+|.+|+|++|+..+......
T Consensus       244 gin~h~~n~~~qtaldil~d~~~~~~  269 (854)
T KOG0507|consen  244 GINTHIKNQHGQTALDIIIDLQENRR  269 (854)
T ss_pred             ccccccccccchHHHHHHHhcchhhh
Confidence            22345678899999999766544333

>PHA02795 ankyrin-like protein; Provisional

Probab=99.85  E-value=6.4e-21  Score=196.31  Aligned_cols=182  Identities=12%  Similarity=-0.075  Sum_probs=148.6

Q ss_pred             HHHHcCCHHHHHHHHHhCcccc-cc---ccCCCCChHHHHHHh--cCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHH
Q 043183           11 RAALNGDWAVAKSIYDVYEGEI-GI---AIAKRGDTALRIAAA--GKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLH   84 (564)
Q Consensus        11 ~Aa~~G~~~~v~~Ll~~~~~~l-~~---~~~~~g~TpLh~Aa~--~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~   84 (564)
                      .|+..+..|+++.|+.++.+.. ..   ..+..++|+||+|+.  .|+.++|++|+++  |++++..  ++.||||.|+ 
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~--GADIn~~--~~~t~lh~A~-  157 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDH--GAVIYKI--ECLNAYFRGI-  157 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHC--CCCCCCC--CCCCHHHHHH-
Confidence            7899999999999999987621 01   346779999999999  9999999999999  6677653  4589999999 


Q ss_pred             hch-----HHHHhcCccccccc-----CCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCC
Q 043183           85 LEG-----RVMMKHNRSIAMVR-----DHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCE  154 (564)
Q Consensus        85 ~~G-----~~Ll~~~~~~~~~~-----d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~  154 (564)
                      ..|     +.|++++.+..+..     +..|.||+|.|+..++.+++++|+              +.+++ ++.+|.+|.
T Consensus       158 ~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LI--------------s~GAD-IN~kD~~G~  222 (437)
T PHA02795        158 CKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCI--------------PYIED-INQLDAGGR  222 (437)
T ss_pred             HcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHH--------------hCcCC-cCcCCCCCC
Confidence            887     88888875433322     234789999999999999999885              35544 488999999


Q ss_pred             cHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcC
Q 043183          155 TPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQG  234 (564)
Q Consensus       155 TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g  234 (564)
                      ||||+|+..|+.                                ++++.|++     .+++++.+|..|.||||+|+..|
T Consensus       223 TpLh~Aa~~g~~--------------------------------eiVelLL~-----~GAdIN~~d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        223 TLLYRAIYAGYI--------------------------------DLVSWLLE-----NGANVNAVMSNGYTCLDVAVDRG  265 (437)
T ss_pred             CHHHHHHHcCCH--------------------------------HHHHHHHH-----CCCCCCCcCCCCCCHHHHHHHcC
Confidence            999999999954                                56666643     56788999999999999999998


Q ss_pred             C--------HHHHHHHHHhCCCc
Q 043183          235 N--------VGFLLILTREYPNL  249 (564)
Q Consensus       235 ~--------~~iv~~LL~~~~~~  249 (564)
                      +        .+++++|+++++++
T Consensus       266 ~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        266 SVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             CcccccccHHHHHHHHHhCCCCC
Confidence            4        69999999999987

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.85  E-value=1.5e-20  Score=214.48  Aligned_cols=174  Identities=17%  Similarity=0.142  Sum_probs=146.0

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHH
Q 043183           37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDV  111 (564)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~  111 (564)
                      +.++.++||.||..|+.++++.|++.  +.+++.+|..|.||||+|| ..|     +.|++++.+ ++.+|.+|+||||+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~--G~d~n~~d~~G~TpLh~Aa-~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~  597 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKA--KLDPDIGDSKGRTPLHIAA-SKGYEDCVLVLLKHACN-VHIRDANGNTALWN  597 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH-HcChHHHHHHHHhcCCC-CCCcCCCCCCHHHH
Confidence            45678999999999999999999988  6778999999999999999 999     778887654 68899999999999


Q ss_pred             HHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHH
Q 043183          112 AASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVE  191 (564)
Q Consensus       112 Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~  191 (564)
                      |+..|+.+++++|++              . +..  ..+..|.+|||+|+..|+.                         
T Consensus       598 A~~~g~~~iv~~L~~--------------~-~~~--~~~~~~~~~L~~Aa~~g~~-------------------------  635 (823)
T PLN03192        598 AISAKHHKIFRILYH--------------F-ASI--SDPHAAGDLLCTAAKRNDL-------------------------  635 (823)
T ss_pred             HHHhCCHHHHHHHHh--------------c-Ccc--cCcccCchHHHHHHHhCCH-------------------------
Confidence            999999999999864              1 111  2245688999999999965                         


Q ss_pred             HHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcC-CchH
Q 043183          192 VQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTR-NNIL  270 (564)
Q Consensus       192 v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G-~TpL  270 (564)
                             ++++.|++     .+.+++.+|.+|+||||+|+..|+.+++++|+++|+++....          .+| .||+
T Consensus       636 -------~~v~~Ll~-----~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~----------~~g~~t~~  693 (823)
T PLN03192        636 -------TAMKELLK-----QGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN----------TDDDFSPT  693 (823)
T ss_pred             -------HHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCC----------CCCCCCHH
Confidence                   56666654     456788999999999999999999999999999999985433          555 9999


Q ss_pred             HHHHhcCC
Q 043183          271 HLAAMLPP  278 (564)
Q Consensus       271 hlAa~~~~  278 (564)
                      +++.....
T Consensus       694 ~l~~~~~~  701 (823)
T PLN03192        694 ELRELLQK  701 (823)
T ss_pred             HHHHHHHH
Confidence            99876544

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.83  E-value=4e-21  Score=173.29  Aligned_cols=211  Identities=17%  Similarity=0.074  Sum_probs=173.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      -|++.+-.+.+.|+.+.+.....-+++.. ...+.+|.+++|.|+-.|+.+.+..++..  +...+..+..+.+|+.+++
T Consensus        61 lge~~~~~~~~s~nsd~~v~s~~~~~~~~-~~t~p~g~~~~~v~ap~~s~~k~sttltN--~~rgnevs~~p~s~~slsV  137 (296)
T KOG0502|consen   61 LGESLLTVAVRSGNSDVAVQSAQLDPDAI-DETDPEGWSALLVAAPCGSVDKVSTTLTN--GARGNEVSLMPWSPLSLSV  137 (296)
T ss_pred             cCCcccchhhhcCCcHHHHHhhccCCCCC-CCCCchhhhhhhhcCCCCCcceeeeeecc--cccCCccccccCChhhHHH
Confidence            35666777888999999888888777755 33577899999999999999999999987  4456677889999999999


Q ss_pred             Hhch-HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHh
Q 043183           84 HLEG-RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALAR  162 (564)
Q Consensus        84 ~~~G-~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~  162 (564)
                      |+.- +.........++.+|+.|.|||.+|+.+|++++|++||+              ++.+ +....+...|+|.+|++
T Consensus       138 hql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~--------------~GAd-p~~lgk~resALsLAt~  202 (296)
T KOG0502|consen  138 HQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLN--------------SGAD-PDALGKYRESALSLATR  202 (296)
T ss_pred             HHHHHHHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHH--------------cCCC-hhhhhhhhhhhHhHHhc
Confidence            4333 333333345689999999999999999999999999963              4433 36677788899999999


Q ss_pred             CCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHH
Q 043183          163 KNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLIL  242 (564)
Q Consensus       163 ~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~L  242 (564)
                      .|..                                ++|+.|++     .+-++|.-|-+|-|||-+|++.|+.++++.|
T Consensus       203 ggyt--------------------------------diV~lLL~-----r~vdVNvyDwNGgTpLlyAvrgnhvkcve~L  245 (296)
T KOG0502|consen  203 GGYT--------------------------------DIVELLLT-----REVDVNVYDWNGGTPLLYAVRGNHVKCVESL  245 (296)
T ss_pred             CChH--------------------------------HHHHHHHh-----cCCCcceeccCCCceeeeeecCChHHHHHHH
Confidence            9965                                67776644     3447888899999999999999999999999


Q ss_pred             HHhCCCcccccccccchHHHhhcCCchHHHHHhcCCC
Q 043183          243 TREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQ  279 (564)
Q Consensus       243 L~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~  279 (564)
                      |..|+++....          ..|++++++|+..|..
T Consensus       246 l~sGAd~t~e~----------dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  246 LNSGADVTQED----------DSGYWIMDLAVALGYR  272 (296)
T ss_pred             HhcCCCccccc----------ccCCcHHHHHHHhhhH
Confidence            99999986555          8999999999999985

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.82  E-value=6.3e-20  Score=208.14  Aligned_cols=199  Identities=18%  Similarity=0.143  Sum_probs=138.6

Q ss_pred             CCCCCcHHH-HHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHH----HHHHHcCCcc--------cc
Q 043183            2 TRSRRLQTY-RAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFL----KELVKIMEAE--------DL   68 (564)
Q Consensus         2 ~~~g~t~Lh-~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv----~~Ll~~~~~~--------~l   68 (564)
                      |..|+|||| .|+..++.++++.|++.+.      .+..|+||||.|+.. +.+.+    +.+.+.....        ..
T Consensus        49 d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T~Lh~A~~~-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~  121 (743)
T TIGR00870        49 DRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDTLLHAISLE-YVDAVEAILLHLLAAFRKSGPLELANDQY  121 (743)
T ss_pred             CccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChHHHHHHHhc-cHHHHHHHHHHHhhcccccCchhhhcccc
Confidence            467999999 8888889999999987754      467899999999973 33333    3333332110        01


Q ss_pred             cCCCCCCCcHHHHHHHhch-----HHHHhcCccccccc-------------CCCCCcHHHHHHHcCCCchHHHHHHcccC
Q 043183           69 AKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVR-------------DHNQTLPIDVAASLGHKDMPICMVSMNML  130 (564)
Q Consensus        69 ~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~-------------d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~  130 (564)
                      ...+..|.||||+|| ..|     +.|++++.++....             ...|+||||.|+..|+.+++++|+     
T Consensus       122 ~~~~~~G~TpLhlAa-~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl-----  195 (743)
T TIGR00870       122 TSEFTPGITALHLAA-HRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLS-----  195 (743)
T ss_pred             ccccCCCCcHHHHHH-HhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHh-----
Confidence            123457999999999 888     88898876553211             135999999999999999999886     


Q ss_pred             CHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhcc
Q 043183          131 LPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVAL  210 (564)
Q Consensus       131 ~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~  210 (564)
                                +++..++.+|..|+||||+|+..+...                   ..+.    ..+.++.+.+.+.+-.
T Consensus       196 ----------~~gadin~~d~~g~T~Lh~A~~~~~~~-------------------~~~~----~l~~~~~~~l~~ll~~  242 (743)
T TIGR00870       196 ----------EDPADILTADSLGNTLLHLLVMENEFK-------------------AEYE----ELSCQMYNFALSLLDK  242 (743)
T ss_pred             ----------cCCcchhhHhhhhhHHHHHHHhhhhhh-------------------HHHH----HHHHHHHHHHHHHHhc
Confidence                      344556889999999999999987320                   0010    1122333333332221


Q ss_pred             CCh--hhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhC
Q 043183          211 LSD--SEISRLISKPGALIFDAAKQGNVGFLLILTREY  246 (564)
Q Consensus       211 ~~~--~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~  246 (564)
                      ..+  ...+..|.+|.||||+|+..|+.+++++|++.+
T Consensus       243 ~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       243 LRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             cCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            111  112567899999999999999999999999854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.82  E-value=4.5e-19  Score=189.11  Aligned_cols=140  Identities=8%  Similarity=-0.054  Sum_probs=107.1

Q ss_pred             CCCCcHHHHHHHcCC----HHHHHHHHHhCccccccccCCCCChHHHH-HHhcCCHHHHHHHHHcCCcccccCCCCCCCc
Q 043183            3 RSRRLQTYRAALNGD----WAVAKSIYDVYEGEIGIAIAKRGDTALRI-AAAGKYIEFLKELVKIMEAEDLAKPNKHGGT   77 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~----~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~-Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~T   77 (564)
                      +++.||||.-..+.+    .+++..|++. ++    ..|.+|.+|+|+ |..+|+.|+|++|+++  +++++.++..|.|
T Consensus        35 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~n~~~~~~~~~~~s~n~~lElvk~LI~~--GAdvN~~~n~~~~  107 (631)
T PHA02792         35 YDGETPLKAYVTKKNNNIKNDVVILLLSS-VD----YKNINDFDIFEYLCSDNIDIELLKLLISK--GLEINSIKNGINI  107 (631)
T ss_pred             cCCCccHHHHHhhhhhhHHHHHHHHHHhC-CC----cCccCCccHHHHHHHhcccHHHHHHHHHc--CCCcccccCCCCc
Confidence            468899999976655    2345454433 22    247788889985 5568999999999998  7789999999999


Q ss_pred             HHHHHHHhc-h-----HHHHhcCccc-----------------------------------ccccCCCCCcHHHHHHHcC
Q 043183           78 ALSMLLHLE-G-----RVMMKHNRSI-----------------------------------AMVRDHNQTLPIDVAASLG  116 (564)
Q Consensus        78 pLH~Aa~~~-G-----~~Ll~~~~~~-----------------------------------~~~~d~~G~TpLh~Aa~~g  116 (564)
                      |+|+|+ .. |     +.|++.+.+.                                   .+..|..|.||||+|+..+
T Consensus       108 ~l~ya~-~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~  186 (631)
T PHA02792        108 VEKYAT-TSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITR  186 (631)
T ss_pred             ceeEee-cCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhC
Confidence            999997 64 4     8888887531                                   1245667999999999988


Q ss_pred             -------CCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCC
Q 043183          117 -------HKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNL  165 (564)
Q Consensus       117 -------~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~  165 (564)
                             +.|++++|+              +++.+. +..|..|.||||+|+.+.+
T Consensus       187 s~~~~~~~~~v~k~Li--------------~~g~~~-~~~d~~g~t~l~~~~~~~~  227 (631)
T PHA02792        187 SQDGYATSLDVINYLI--------------SHEKEM-RYYTYREHTTLYYYVDKCD  227 (631)
T ss_pred             CcccccCCHHHHHHHH--------------hCCCCc-CccCCCCChHHHHHHHccc
Confidence                   677777765              455555 6789999999999999883

>PHA02795 ankyrin-like protein; Provisional

Probab=99.82  E-value=5.8e-20  Score=189.26  Aligned_cols=166  Identities=12%  Similarity=-0.027  Sum_probs=135.1

Q ss_pred             HHHhcCCHHHHHHHHHcCCccccc------CCCCCCCcHHHHHHHh--ch-----HHHHhcCcccccccCCCCCcHHHHH
Q 043183           46 IAAAGKYIEFLKELVKIMEAEDLA------KPNKHGGTALSMLLHL--EG-----RVMMKHNRSIAMVRDHNQTLPIDVA  112 (564)
Q Consensus        46 ~Aa~~g~~~iv~~Ll~~~~~~~l~------~~d~~G~TpLH~Aa~~--~G-----~~Ll~~~~~~~~~~d~~G~TpLh~A  112 (564)
                      +|+..+..|++++|+.++  .+++      .++..++|+||+|+ .  .|     ++|++++.+. +.  .++.||||.|
T Consensus        83 ~~~~~~~k~~~~~l~s~~--~~~~~~~~~~~~~~~~~~~L~~~~-~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A  156 (437)
T PHA02795         83 LFAYITYKDIISALVSKN--YMEDIFSIIIKNCNSVQDLLLYYL-SNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRG  156 (437)
T ss_pred             HHhhcchHHHHHHHHhcc--cccchhhhhhhccccccHHHHHHH-HhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHH
Confidence            999999999999999994  4433      57888999999999 8  34     9999998775 33  3458999999


Q ss_pred             HHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccc-----cCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcC
Q 043183          113 ASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATL-----RAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGA  187 (564)
Q Consensus       113 a~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~-----~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~  187 (564)
                      +..|+.+++++|++              .+.+..+.     .+..|.||+|.|+..+..                     
T Consensus       157 ~~~~~~eIVk~Lls--------------~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~---------------------  201 (437)
T PHA02795        157 ICKKESSVVEFILN--------------CGIPDENDVKLDLYKIIQYTRGFLVDEPTVL---------------------  201 (437)
T ss_pred             HHcCcHHHHHHHHh--------------cCCcccccccchhhhhhccchhHHHHhcCHH---------------------
Confidence            99999999999975              33222111     234578999999988743                     


Q ss_pred             CcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCC
Q 043183          188 EDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRN  267 (564)
Q Consensus       188 ~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~  267 (564)
                                 ++++.|++     .+++++.+|..|.||||+|+..|+.+++++|+++|+++....          ..|+
T Consensus       202 -----------eIve~LIs-----~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d----------~~G~  255 (437)
T PHA02795        202 -----------EIYKLCIP-----YIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVM----------SNGY  255 (437)
T ss_pred             -----------HHHHHHHh-----CcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC----------CCCC
Confidence                       66666543     567899999999999999999999999999999999984443          8999


Q ss_pred             chHHHHHhcCC
Q 043183          268 NILHLAAMLPP  278 (564)
Q Consensus       268 TpLhlAa~~~~  278 (564)
                      ||||+|+..|+
T Consensus       256 TpLh~Aa~~g~  266 (437)
T PHA02795        256 TCLDVAVDRGS  266 (437)
T ss_pred             CHHHHHHHcCC
Confidence            99999999985

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.82  E-value=1.4e-19  Score=206.61  Aligned_cols=171  Identities=15%  Similarity=0.076  Sum_probs=141.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      .+.++||.||..|+.+.++.|++.+.+.  +..|.+|.||||+||..|+.++++.|+++  +.+++.+|.+|+||||+|+
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~--n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~--gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDP--DIGDSKGRTPLHIAASKGYEDCVLVLLKH--ACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcChHHHHHHHHhc--CCCCCCcCCCCCCHHHHHH
Confidence            4578999999999999999999987763  45689999999999999999999999998  6788999999999999999


Q ss_pred             Hhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHH
Q 043183           84 HLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLH  158 (564)
Q Consensus        84 ~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh  158 (564)
                       ..|     +.|++....   ..+..|.+|||.|+..|+.+++++|++              .+.+ ++.+|.+|+||||
T Consensus       600 -~~g~~~iv~~L~~~~~~---~~~~~~~~~L~~Aa~~g~~~~v~~Ll~--------------~Gad-in~~d~~G~TpLh  660 (823)
T PLN03192        600 -SAKHHKIFRILYHFASI---SDPHAAGDLLCTAAKRNDLTAMKELLK--------------QGLN-VDSEDHQGATALQ  660 (823)
T ss_pred             -HhCCHHHHHHHHhcCcc---cCcccCchHHHHHHHhCCHHHHHHHHH--------------CCCC-CCCCCCCCCCHHH
Confidence             999     666654432   123457899999999999999999853              5544 4789999999999


Q ss_pred             HHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCC-chHHHHHHHcC
Q 043183          159 ALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKP-GALIFDAAKQG  234 (564)
Q Consensus       159 ~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G-~TpLh~Aa~~g  234 (564)
                      +|+..|+.                                ++++.|++     .+++++..|..| .||++++....
T Consensus       661 ~A~~~g~~--------------------------------~iv~~Ll~-----~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        661 VAMAEDHV--------------------------------DMVRLLIM-----NGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHHCCcH--------------------------------HHHHHHHH-----cCCCCCCCCCCCCCCHHHHHHHHH
Confidence            99999954                                56666644     456777888888 89998875543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.81  E-value=4.4e-20  Score=193.10  Aligned_cols=216  Identities=20%  Similarity=0.188  Sum_probs=174.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |++|.|+||.||.+|+.++++.|++..+..  ...+..|.+|||+|+..|+.|+|+.|+..  ...++..+..|.||||.
T Consensus        46 d~~gfTalhha~Lng~~~is~llle~ea~l--dl~d~kg~~plhlaaw~g~~e~vkmll~q--~d~~na~~~e~~tplhl  121 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQNQISKLLLDYEALL--DLCDTKGILPLHLAAWNGNLEIVKMLLLQ--TDILNAVNIENETPLHL  121 (854)
T ss_pred             CccchhHHHHHHhcCchHHHHHHhcchhhh--hhhhccCcceEEehhhcCcchHHHHHHhc--ccCCCcccccCcCccch
Confidence            789999999999999999999999886653  33568999999999999999999999988  45688899999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      || ..|     .+|+.++.+ +.++|+.+.|+|-+|++.|..++++.|++.   .+....  +..-+  ...++-.+-+|
T Consensus       122 aa-qhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~---~~~~~~--~~~~~--~~~~~~~~~~p  192 (854)
T KOG0507|consen  122 AA-QHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRFGRAEVVQMLLQK---KFPVQS--SLRVG--DIKRPFPAIYP  192 (854)
T ss_pred             hh-hhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHhhhhHHHHHHhhh---ccchhh--cccCC--CCCCCCCCcCC
Confidence            99 888     788888754 678899999999999999999999999873   222222  22222  34677789999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV  236 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~  236 (564)
                      ||.|+++|+.                                ++++.+.     ..+-++|....+ -|+||.|+..|..
T Consensus       193 lHlaakngh~--------------------------------~~~~~ll-----~ag~din~~t~~-gtalheaalcgk~  234 (854)
T KOG0507|consen  193 LHLAAKNGHV--------------------------------ECMQALL-----EAGFDINYTTED-GTALHEAALCGKA  234 (854)
T ss_pred             cchhhhcchH--------------------------------HHHHHHH-----hcCCCccccccc-chhhhhHhhcCcc
Confidence            9999999943                                3444443     345566666665 5999999999999


Q ss_pred             HHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCC
Q 043183          237 GFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPP  278 (564)
Q Consensus       237 ~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~  278 (564)
                      ++|..|++.|-+....+          .+|+|+|++-.....
T Consensus       235 evvr~ll~~gin~h~~n----------~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  235 EVVRFLLEIGINTHIKN----------QHGQTALDIIIDLQE  266 (854)
T ss_pred             hhhhHHHhhcccccccc----------ccchHHHHHHHhcch
Confidence            99999999987765444          788888887765543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=6.3e-19  Score=170.24  Aligned_cols=175  Identities=17%  Similarity=0.156  Sum_probs=138.5

Q ss_pred             CHHHHHHHHHh----Ccccc---ccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch--
Q 043183           17 DWAVAKSIYDV----YEGEI---GIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG--   87 (564)
Q Consensus        17 ~~~~v~~Ll~~----~~~~l---~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G--   87 (564)
                      +.+.|+..|..    .+..+   .+..|.+|+|+||+|+.+++.++|+.||+.+ --+++.+|+-|+||.++|+ ...  
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSg-vC~VD~qNrAGYtpiMLaA-LA~lk  315 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSG-VCDVDQQNRAGYTPVMLAA-LAKLK  315 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccC-cccccccccccccHHHHHH-HHhhc
Confidence            57777777665    22222   2335899999999999999999999999985 3479999999999999999 766  


Q ss_pred             --------HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHH
Q 043183           88 --------RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHA  159 (564)
Q Consensus        88 --------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~  159 (564)
                              ..|... +++.......|.|+|++|+.+|+.++|+.||               .+...++.+|.+|.|+|++
T Consensus       316 ~~~d~~vV~~LF~m-gnVNaKAsQ~gQTALMLAVSHGr~d~vk~LL---------------acgAdVNiQDdDGSTALMC  379 (452)
T KOG0514|consen  316 QPADRTVVERLFKM-GDVNAKASQHGQTALMLAVSHGRVDMVKALL---------------ACGADVNIQDDDGSTALMC  379 (452)
T ss_pred             chhhHHHHHHHHhc-cCcchhhhhhcchhhhhhhhcCcHHHHHHHH---------------HccCCCccccCCccHHHhh
Confidence                    223222 2443344556999999999999999999997               3556669999999999999


Q ss_pred             HHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHH
Q 043183          160 LARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFL  239 (564)
Q Consensus       160 Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv  239 (564)
                      ||.+|                        |.|        |++.|    |.....++...|.+|.|+|.+|-..||.||.
T Consensus       380 A~EHG------------------------hkE--------ivklL----LA~p~cd~sLtD~DgSTAl~IAleagh~eIa  423 (452)
T KOG0514|consen  380 AAEHG------------------------HKE--------IVKLL----LAVPSCDISLTDVDGSTALSIALEAGHREIA  423 (452)
T ss_pred             hhhhC------------------------hHH--------HHHHH----hccCcccceeecCCCchhhhhHHhcCchHHH
Confidence            99999                        544        44444    5566778889999999999999999999998


Q ss_pred             HHHHHh
Q 043183          240 LILTRE  245 (564)
Q Consensus       240 ~~LL~~  245 (564)
                      -.|-.+
T Consensus       424 ~mlYa~  429 (452)
T KOG0514|consen  424 VMLYAH  429 (452)
T ss_pred             HHHHHH
Confidence            887643

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.77  E-value=8.8e-19  Score=177.85  Aligned_cols=215  Identities=17%  Similarity=0.142  Sum_probs=163.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch
Q 043183            8 QTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG   87 (564)
Q Consensus         8 ~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G   87 (564)
                      .+..|+..|+.+.|+.|+..+...  ...|.+|.|+||-+|...+.+||++|+++  +++++..|..|+||||.|+ ..|
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~--~~~n~DglTalhq~~id~~~e~v~~l~e~--ga~Vn~~d~e~wtPlhaaa-scg  117 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP--NLCNVDGLTALHQACIDDNLEMVKFLVEN--GANVNAQDNEGWTPLHAAA-SCG  117 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc--cccCCccchhHHHHHhcccHHHHHHHHHh--cCCccccccccCCcchhhc-ccc
Confidence            467789999999999999987654  45689999999999999999999999999  7789999999999999999 899


Q ss_pred             -----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH-----cc----cCC---HHHHHHHHHcCCccccccC
Q 043183           88 -----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS-----MN----MLL---PDVALQLCRDRPKLATLRA  150 (564)
Q Consensus        88 -----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-----~~----~~~---~~i~~~Ll~~~~~~~~~~d  150 (564)
                           ++++..+.++ ...|.+|..|+.+|......++...-..     +.    ...   .+-+...+..+. ....++
T Consensus       118 ~~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~-~~d~~~  195 (527)
T KOG0505|consen  118 YLNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGA-ELDARH  195 (527)
T ss_pred             cHHHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccc-cccccc
Confidence                 7778877654 4557777778766654333332222211     00    000   111333444333 336677


Q ss_pred             CCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHH
Q 043183          151 GDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDA  230 (564)
Q Consensus       151 ~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~A  230 (564)
                      ..|.|.||.|+.+|..                                ++...|++     .+.+++.+|.+|+||||.|
T Consensus       196 ~rG~T~lHvAaa~Gy~--------------------------------e~~~lLl~-----ag~~~~~~D~dgWtPlHAA  238 (527)
T KOG0505|consen  196 ARGATALHVAAANGYT--------------------------------EVAALLLQ-----AGYSVNIKDYDGWTPLHAA  238 (527)
T ss_pred             cccchHHHHHHhhhHH--------------------------------HHHHHHHH-----hccCcccccccCCCcccHH
Confidence            7799999999999964                                45555443     4557788999999999999


Q ss_pred             HHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhc
Q 043183          231 AKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAML  276 (564)
Q Consensus       231 a~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~  276 (564)
                      |..|+.+++++|+++++++....          ..|.||+++|..-
T Consensus       239 A~Wg~~~~~elL~~~ga~~d~~t----------~~g~~p~dv~dee  274 (527)
T KOG0505|consen  239 AHWGQEDACELLVEHGADMDAKT----------KMGETPLDVADEE  274 (527)
T ss_pred             HHhhhHhHHHHHHHhhcccchhh----------hcCCCCccchhhh
Confidence            99999999999999999984433          9999999999754

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.76  E-value=2.7e-19  Score=161.57  Aligned_cols=199  Identities=14%  Similarity=0.063  Sum_probs=163.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      +.+|++++|.|+-+|+...+..+|.++...  +..+--+.+|+.+++...|.+.+..+.+.    .++..|+.|.|||.|
T Consensus        93 ~p~g~~~~~v~ap~~s~~k~sttltN~~rg--nevs~~p~s~~slsVhql~L~~~~~~~~n----~VN~~De~GfTpLiW  166 (296)
T KOG0502|consen   93 DPEGWSALLVAAPCGSVDKVSTTLTNGARG--NEVSLMPWSPLSLSVHQLHLDVVDLLVNN----KVNACDEFGFTPLIW  166 (296)
T ss_pred             CchhhhhhhhcCCCCCcceeeeeecccccC--CccccccCChhhHHHHHHHHHHHHHHhhc----cccCccccCchHhHH
Confidence            457999999999999999999998876543  44677899999999999999999888866    578899999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      |+ +.|     +.|++.+.+ +....+...|+|.+|++.|..++|++||              .+.++. +..|-+|-||
T Consensus       167 Aa-a~G~i~vV~fLL~~GAd-p~~lgk~resALsLAt~ggytdiV~lLL--------------~r~vdV-NvyDwNGgTp  229 (296)
T KOG0502|consen  167 AA-AKGHIPVVQFLLNSGAD-PDALGKYRESALSLATRGGYTDIVELLL--------------TREVDV-NVYDWNGGTP  229 (296)
T ss_pred             HH-hcCchHHHHHHHHcCCC-hhhhhhhhhhhHhHHhcCChHHHHHHHH--------------hcCCCc-ceeccCCCce
Confidence            99 999     888888765 5667788899999999999999999885              466666 8899999999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV  236 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~  236 (564)
                      |-+|++.++.                                ++++.|+     ..++++++.|..|.+++..|+..|+.
T Consensus       230 LlyAvrgnhv--------------------------------kcve~Ll-----~sGAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  230 LLYAVRGNHV--------------------------------KCVESLL-----NSGADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             eeeeecCChH--------------------------------HHHHHHH-----hcCCCcccccccCCcHHHHHHHhhhH
Confidence            9999998844                                4455443     46778999999999999999999998


Q ss_pred             HHHHHHHHhCCCcccccccccchHHHhhcCCchHH
Q 043183          237 GFLLILTREYPNLHISYRRFESSGAHLQTRNNILH  271 (564)
Q Consensus       237 ~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLh  271 (564)
                       +|+..+++......+.          +.-+||+|
T Consensus       273 -~Vqqvie~h~lkl~Q~----------~~~~~~~~  296 (296)
T KOG0502|consen  273 -IVQQVIEKHALKLCQD----------SEKRTPLH  296 (296)
T ss_pred             -HHHHHHHHHHHHHhhc----------ccCCCCCC
Confidence             8888887755542221          55667765

>PHA02741 hypothetical protein; Provisional

Probab=99.74  E-value=2e-17  Score=152.78  Aligned_cols=121  Identities=15%  Similarity=0.147  Sum_probs=102.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhC-----ccccccccCCCCChHHHHHHhcCC----HHHHHHHHHcCCcccccCCC
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVY-----EGEIGIAIAKRGDTALRIAAAGKY----IEFLKELVKIMEAEDLAKPN   72 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~-----~~~l~~~~~~~g~TpLh~Aa~~g~----~~iv~~Ll~~~~~~~l~~~d   72 (564)
                      |..|.||||.||+.|+.++++.|+...     ...+ ...|..|.||||+|+..|+    .+++++|++.  +.+++.+|
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~--gadin~~~   94 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL--GADINAQE   94 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc--CCCCCCCC
Confidence            567999999999999999999986532     1223 4468899999999999999    5889999987  66788888


Q ss_pred             C-CCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           73 K-HGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        73 ~-~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      . .|+||||+|+ ..|     +.|++..+..++..|.+|+||||+|+..|+.+++++|++
T Consensus        95 ~~~g~TpLh~A~-~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~  153 (169)
T PHA02741         95 MLEGDTALHLAA-HRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILRE  153 (169)
T ss_pred             cCCCCCHHHHHH-HcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            5 8999999999 888     777765334567889999999999999999999999875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.73  E-value=4.9e-18  Score=154.46  Aligned_cols=104  Identities=13%  Similarity=0.063  Sum_probs=79.6

Q ss_pred             ccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccC-CCCCcHHHHHHhCCCCCccccccccc
Q 043183           98 AMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRA-GDCETPLHALARKNLTSSNFINQNQR  176 (564)
Q Consensus        98 ~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~~f~~~~~~  176 (564)
                      ...+|.+|.||||+|+..|+.+.++.           ++.|++.+.+. +.+| .+|+||||+|+..|+.          
T Consensus        48 ~~~~d~~g~t~Lh~a~~~~~~~~~e~-----------v~~Ll~~gadi-n~~~~~~g~T~Lh~A~~~~~~----------  105 (154)
T PHA02736         48 VLEYNRHGKQCVHIVSNPDKADPQEK-----------LKLLMEWGADI-NGKERVFGNTPLHIAVYTQNY----------  105 (154)
T ss_pred             HHHhcCCCCEEEEeecccCchhHHHH-----------HHHHHHcCCCc-cccCCCCCCcHHHHHHHhCCH----------
Confidence            44567889999999998888754322           12335566554 6676 5899999999999854          


Q ss_pred             chHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183          177 GIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNL  249 (564)
Q Consensus       177 ~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~  249 (564)
                                            ++++.|+    ...+.+++.+|..|.||||+|+..|+.+++++|++.++++
T Consensus       106 ----------------------~i~~~Ll----~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        106 ----------------------ELATWLC----NQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ----------------------HHHHHHH----hCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                                  5666553    3345678889999999999999999999999999998875

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.71  E-value=4.5e-17  Score=165.53  Aligned_cols=226  Identities=16%  Similarity=0.160  Sum_probs=161.8

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcC
Q 043183           42 TALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLG  116 (564)
Q Consensus        42 TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g  116 (564)
                      -.+.-|+..|..+=|+.|+..  +.+.+..|.+|.|+||-+| ...     +++++.+.. ++..|.+|+||||.|+..|
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~--ga~~~~~n~DglTalhq~~-id~~~e~v~~l~e~ga~-Vn~~d~e~wtPlhaaascg  117 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNR--GASPNLCNVDGLTALHQAC-IDDNLEMVKFLVENGAN-VNAQDNEGWTPLHAAASCG  117 (527)
T ss_pred             HHHHhccccccHHHHHHHhcc--CCCccccCCccchhHHHHH-hcccHHHHHHHHHhcCC-ccccccccCCcchhhcccc
Confidence            346778889999999999988  4566889999999999999 777     778888765 5888999999999999999


Q ss_pred             CCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHh
Q 043183          117 HKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQ  196 (564)
Q Consensus       117 ~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~  196 (564)
                      |..++++|+.              .+.++ ...+.+|..|+..+......          ..+......-...++.-+..
T Consensus       118 ~~~i~~~li~--------------~gA~~-~avNsdg~~P~dl~e~ea~~----------~~l~~~~~r~gi~iea~R~~  172 (527)
T KOG0505|consen  118 YLNIVEYLIQ--------------HGANL-LAVNSDGNMPYDLAEDEATL----------DVLETEMARQGIDIEAARKA  172 (527)
T ss_pred             cHHHHHHHHH--------------hhhhh-hhccCCCCCccccccCcchh----------HHHHHHHHHhcccHHHHhhh
Confidence            9999999974              33333 45677777777665433221          11111111111123333332


Q ss_pred             HHHH-HHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHh
Q 043183          197 ALKL-VERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAM  275 (564)
Q Consensus       197 ~~~l-v~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~  275 (564)
                      ..+. ++.... .+. .+.+.+..+..|.|.||+|+.+|..++.++|++++.++..+.          .+|+||||.|+.
T Consensus       173 ~e~~ml~D~~q-~l~-~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D----------~dgWtPlHAAA~  240 (527)
T KOG0505|consen  173 EEQTMLDDARQ-WLN-AGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKD----------YDGWTPLHAAAH  240 (527)
T ss_pred             hHHHHHHHHHH-HHh-ccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccccc----------ccCCCcccHHHH
Confidence            2222 222222 233 455566667779999999999999999999999998885544          899999999999


Q ss_pred             cCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHH
Q 043183          276 LPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTK  322 (564)
Q Consensus       276 ~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~  322 (564)
                      -|..+.+++|..              .......++..|+||.|++.+
T Consensus       241 Wg~~~~~elL~~--------------~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  241 WGQEDACELLVE--------------HGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             hhhHhHHHHHHH--------------hhcccchhhhcCCCCccchhh
Confidence            999888776511              233455677789999998765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.71  E-value=7.9e-17  Score=148.17  Aligned_cols=120  Identities=11%  Similarity=0.039  Sum_probs=96.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHH----HHHHhCccccccccCCCCChHHHHHHhcCCHHH---HHHHHHcCCcccccCCC-C
Q 043183            2 TRSRRLQTYRAALNGDWAVAK----SIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEF---LKELVKIMEAEDLAKPN-K   73 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~----~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~i---v~~Ll~~~~~~~l~~~d-~   73 (564)
                      +..+.++||.||+.|+.+.++    .|++.+.. + ...|..|+||||+|+..|+.+.   +++|++.  +.+++.+| .
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~--Gadin~~d~~   92 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-L-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNM--GADINARELG   92 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-h-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHc--CCCCCCCCCC
Confidence            446788999999999985444    44544433 3 4468899999999999998764   7899988  67788888 5


Q ss_pred             CCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           74 HGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        74 ~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      .|.||||+|+ ..|     +.|+......++.+|.+|.||||+|+..++.+++++|++
T Consensus        93 ~g~TpLh~A~-~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~  149 (166)
T PHA02743         93 TGNTLLHIAA-STKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRA  149 (166)
T ss_pred             CCCcHHHHHH-HhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            8999999999 898     667754334467889999999999999999999999863

>PHA02741 hypothetical protein; Provisional

Probab=99.71  E-value=9.9e-17  Score=148.12  Aligned_cols=115  Identities=10%  Similarity=0.135  Sum_probs=95.2

Q ss_pred             cCCCCChHHHHHHhcCCHHHHHHHHHcC----CcccccCCCCCCCcHHHHHHHhch---------HHHHhcCcccccccC
Q 043183           36 IAKRGDTALRIAAAGKYIEFLKELVKIM----EAEDLAKPNKHGGTALSMLLHLEG---------RVMMKHNRSIAMVRD  102 (564)
Q Consensus        36 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~----~~~~l~~~d~~G~TpLH~Aa~~~G---------~~Ll~~~~~~~~~~d  102 (564)
                      .|..|.||||+|++.|+.++++.|+...    .+.+++.+|..|.||||+|+ ..|         +.|++.+.+ ++.+|
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~-~~g~~~~~~~ii~~Ll~~gad-in~~~   94 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAA-EKHEAQLAAEIIDHLIELGAD-INAQE   94 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHH-HcCChHHHHHHHHHHHHcCCC-CCCCC
Confidence            4778999999999999999999987642    24568999999999999999 887         456666655 46667


Q ss_pred             C-CCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCC
Q 043183          103 H-NQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLT  166 (564)
Q Consensus       103 ~-~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~  166 (564)
                      . +|+||||+|+..++.+++++|+              ...+..++..|.+|+||||+|+..++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll--------------~~~g~~~~~~n~~g~tpL~~A~~~~~~  145 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLC--------------CQPGIDLHFCNADNKSPFELAIDNEDV  145 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHH--------------hCCCCCCCcCCCCCCCHHHHHHHCCCH
Confidence            4 8999999999999999999885              333344578899999999999999854

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.71  E-value=7.6e-18  Score=162.84  Aligned_cols=155  Identities=12%  Similarity=0.133  Sum_probs=124.6

Q ss_pred             ccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHc-----CCCchHHHHHHcccCCHHHHHH
Q 043183           68 LAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASL-----GHKDMPICMVSMNMLLPDVALQ  137 (564)
Q Consensus        68 l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~-----g~~~iv~~Ll~~~~~~~~i~~~  137 (564)
                      +|.-|.+|+|+||||+ ..+     +.|++.+-..++..|.-|.||+++|+..     .+.++|..|.            
T Consensus       261 VNlaDsNGNTALHYsV-SHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF------------  327 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAV-SHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLF------------  327 (452)
T ss_pred             hhhhcCCCCeeeeeee-cccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHH------------
Confidence            6788999999999999 888     8999998888999999999999999863     2345555554            


Q ss_pred             HHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHh
Q 043183          138 LCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEIS  217 (564)
Q Consensus       138 Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~  217 (564)
                         +.++........|+|+|++|+.+|+.                                ++|+.|     ..-++++|
T Consensus       328 ---~mgnVNaKAsQ~gQTALMLAVSHGr~--------------------------------d~vk~L-----LacgAdVN  367 (452)
T KOG0514|consen  328 ---KMGDVNAKASQHGQTALMLAVSHGRV--------------------------------DMVKAL-----LACGADVN  367 (452)
T ss_pred             ---hccCcchhhhhhcchhhhhhhhcCcH--------------------------------HHHHHH-----HHccCCCc
Confidence               33444344456899999999999965                                555554     34577999


Q ss_pred             hhhcCCchHHHHHHHcCCHHHHHHHHHhCCCc-ccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          218 RLISKPGALIFDAAKQGNVGFLLILTREYPNL-HISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       218 ~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~-~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      .+|.+|.|+|++||.+||.||+++||.. |.+ ....+         .+|-|+|.+|-+.|+.+|--+|
T Consensus       368 iQDdDGSTALMCA~EHGhkEivklLLA~-p~cd~sLtD---------~DgSTAl~IAleagh~eIa~ml  426 (452)
T KOG0514|consen  368 IQDDDGSTALMCAAEHGHKEIVKLLLAV-PSCDISLTD---------VDGSTALSIALEAGHREIAVML  426 (452)
T ss_pred             cccCCccHHHhhhhhhChHHHHHHHhcc-Ccccceeec---------CCCchhhhhHHhcCchHHHHHH
Confidence            9999999999999999999999999965 333 11112         8999999999999999986665

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.69  E-value=6.3e-17  Score=147.14  Aligned_cols=122  Identities=13%  Similarity=0.078  Sum_probs=95.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHh--Cc-cccccccCCCCChHHHHHHhcCCHH---HHHHHHHcCCcccccCCC-CC
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDV--YE-GEIGIAIAKRGDTALRIAAAGKYIE---FLKELVKIMEAEDLAKPN-KH   74 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~--~~-~~l~~~~~~~g~TpLh~Aa~~g~~~---iv~~Ll~~~~~~~l~~~d-~~   74 (564)
                      |..|.||||+||+.|+.+.+......  +. ..+....|.+|.||||+|+..|+.+   ++++|++.  +.+++.+| ..
T Consensus        14 d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~--gadin~~~~~~   91 (154)
T PHA02736         14 DIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW--GADINGKERVF   91 (154)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc--CCCccccCCCC
Confidence            56799999999999995333222111  11 1112345889999999999999874   68899988  56788888 48


Q ss_pred             CCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           75 GGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        75 G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      |+||||+|+ ..|     +.|+......++.+|..|+||||+|+..|+.+++++|++
T Consensus        92 g~T~Lh~A~-~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~  147 (154)
T PHA02736         92 GNTPLHIAV-YTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRA  147 (154)
T ss_pred             CCcHHHHHH-HhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999 888     777765344568889999999999999999999999864

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.69  E-value=7.1e-17  Score=173.59  Aligned_cols=258  Identities=16%  Similarity=0.136  Sum_probs=194.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |.+|.+||..|+-.||..+|+.|+..+.+ +....|..++|+|-+||..|+.++|++||..  +.+-..+|...+|||.+
T Consensus       787 dkkgf~plImaatagh~tvV~~llk~ha~-veaQsdrtkdt~lSlacsggr~~vvelLl~~--gankehrnvsDytPlsl  863 (2131)
T KOG4369|consen  787 DKKGFVPLIMAATAGHITVVQDLLKAHAD-VEAQSDRTKDTMLSLACSGGRTRVVELLLNA--GANKEHRNVSDYTPLSL  863 (2131)
T ss_pred             ccccchhhhhhcccCchHHHHHHHhhhhh-hhhhcccccCceEEEecCCCcchHHHHHHHh--hccccccchhhcCchhh
Confidence            45688888888888888888888887665 4456688889999999999999999999988  44556677888999999


Q ss_pred             HHHhch-----HHHHhcCcccccc-cCCCCCcHHHHHHHcCCCchHHHHHH--------------------cccCCHHHH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMV-RDHNQTLPIDVAASLGHKDMPICMVS--------------------MNMLLPDVA  135 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~-~d~~G~TpLh~Aa~~g~~~iv~~Ll~--------------------~~~~~~~i~  135 (564)
                      |. ..|     ..++..+.++... ..+.|..||++|..+||.+.++.|++                    .-.++.+++
T Consensus       864 a~-Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv  942 (2131)
T KOG4369|consen  864 AR-SGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVV  942 (2131)
T ss_pred             hc-CcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHH
Confidence            98 777     7777777666443 34458999999999999999999998                    446778999


Q ss_pred             HHHHHcCCccccccCCCCCcHHHHHHhCCCCC-----------cccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHH
Q 043183          136 LQLCRDRPKLATLRAGDCETPLHALARKNLTS-----------SNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERL  204 (564)
Q Consensus       136 ~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~-----------~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l  204 (564)
                      ..||...... ..+-+.|.|||+-+|..|..+           .++........-...+.....|.        +.+.. 
T Consensus       943 ~lLLa~~anv-ehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~--------kfv~~- 1012 (2131)
T KOG4369|consen  943 FLLLAAQANV-EHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHT--------KFVPK- 1012 (2131)
T ss_pred             HHHHHHhhhh-hhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCch--------hhhHH-
Confidence            9999988776 778899999999999999754           11211100000000111122231        22332 


Q ss_pred             HHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCcccc
Q 043183          205 CGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNI  284 (564)
Q Consensus       205 ~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~  284 (564)
                          +....+.+..++++|+|+|-+|+..|+...+..|+++++|.....          +.-+|++.-|.+.|+.+||+.
T Consensus      1013 ----lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qd----------nr~~S~~maafRKgh~~iVk~ 1078 (2131)
T KOG4369|consen 1013 ----LLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQD----------NRTNSRTMAAFRKGHFAIVKK 1078 (2131)
T ss_pred             ----hhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhh----------cccccccHHHHHhchhheecc
Confidence                223445677889999999999999999999999999999884443          778899999999999999987


Q ss_pred             ccc
Q 043183          285 VSG  287 (564)
Q Consensus       285 l~g  287 (564)
                      ...
T Consensus      1079 mv~ 1081 (2131)
T KOG4369|consen 1079 MVP 1081 (2131)
T ss_pred             ccC
Confidence            643

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.67  E-value=2.6e-16  Score=144.69  Aligned_cols=103  Identities=17%  Similarity=0.088  Sum_probs=75.0

Q ss_pred             ccccCCCCCcHHHHHHHcCCCch---HHHHHHcccCCHHHHHHHHHcCCccccccC-CCCCcHHHHHHhCCCCCcccccc
Q 043183           98 AMVRDHNQTLPIDVAASLGHKDM---PICMVSMNMLLPDVALQLCRDRPKLATLRA-GDCETPLHALARKNLTSSNFINQ  173 (564)
Q Consensus        98 ~~~~d~~G~TpLh~Aa~~g~~~i---v~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~~f~~~  173 (564)
                      ++.+|..|+||||+|+..|+.+.   +++|              ++.+.+. +.+| ..|.||||+|+..|+.       
T Consensus        50 ~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~L--------------l~~Gadi-n~~d~~~g~TpLh~A~~~g~~-------  107 (166)
T PHA02743         50 LHRYDHHGRQCTHMVAWYDRANAVMKIELL--------------VNMGADI-NARELGTGNTLLHIAASTKNY-------  107 (166)
T ss_pred             hhccCCCCCcHHHHHHHhCccCHHHHHHHH--------------HHcCCCC-CCCCCCCCCcHHHHHHHhCCH-------
Confidence            44556667777777777776654   4555              4455444 6676 5899999999988854       


Q ss_pred             cccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCccc
Q 043183          174 NQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHI  251 (564)
Q Consensus       174 ~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~  251 (564)
                                               ++++.|+.    ..+.+++.+|..|.||||+|+..|+.+++++|+++++++..
T Consensus       108 -------------------------~iv~~Ll~----~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~  156 (166)
T PHA02743        108 -------------------------ELAEWLCR----QLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDD  156 (166)
T ss_pred             -------------------------HHHHHHHh----ccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence                                     55665542    24566778889999999999999999999999999988743

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.67  E-value=6.2e-16  Score=153.62  Aligned_cols=148  Identities=13%  Similarity=0.097  Sum_probs=112.5

Q ss_pred             cCCCCC-hHHHHHHhcCCHHHHHHHHHcCCcccccCC----CCCCCcHHHHHHHhch-----HHHHhcCcccccc-cCCC
Q 043183           36 IAKRGD-TALRIAAAGKYIEFLKELVKIMEAEDLAKP----NKHGGTALSMLLHLEG-----RVMMKHNRSIAMV-RDHN  104 (564)
Q Consensus        36 ~~~~g~-TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~----d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~-~d~~  104 (564)
                      .|..|. ++||.|+..|+.+++++|++.  +++++.+    +..|.||||+|+ ..|     +.|++.+++. +. .+..
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~--GAdiN~~~~~sd~~g~TpLh~Aa-~~~~~eivklLL~~GADV-N~~~~~~  103 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKL--GADPEAPFPLSENSKTNPLIYAI-DCDNDDAAKLLIRYGADV-NRYAEEA  103 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHC--CCCccccCcccCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCc-CcccCCC
Confidence            355554 567788888999999999998  5566665    468999999999 888     8888888654 54 4567


Q ss_pred             CCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhh
Q 043183          105 QTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFN  184 (564)
Q Consensus       105 G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~  184 (564)
                      |.||||+|+..|+.+++++|++              .++ ..+.+|.+|.||||+|+..++.                  
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~--------------~GA-din~kd~~G~TpL~~A~~~~~~------------------  150 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLS--------------YGA-DINIQTNDMVTPIELALMICNN------------------  150 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH--------------CCC-CCCCCCCCCCCHHHHHHHhCCh------------------
Confidence            9999999999999999999863              444 4478999999999999997754                  


Q ss_pred             hcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCC
Q 043183          185 LGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYP  247 (564)
Q Consensus       185 ~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~  247 (564)
                                    +++..+    .   +   +..+..+.+|++.+   ++.|+++.|+.+..
T Consensus       151 --------------~~~~~~----~---~---~~~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        151 --------------FLAFMI----C---D---NEISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             --------------hHHHHh----c---C---CcccccccChhhhh---ccHHHHHHHHHHHH
Confidence                          122111    1   1   12456678899975   57899999998754

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.65  E-value=1e-15  Score=133.59  Aligned_cols=138  Identities=15%  Similarity=0.120  Sum_probs=114.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch
Q 043183            8 QTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG   87 (564)
Q Consensus         8 ~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G   87 (564)
                      -+..|+..+....|+.||+..++.+ +..|.+|.||||-|+.+||.+||+.|+..  +++.+.+...|+||||-|| ...
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~v-NtrD~D~YTpLHRAaYn~h~div~~ll~~--gAn~~a~T~~GWTPLhSAc-kWn  141 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHV-NTRDEDEYTPLHRAAYNGHLDIVHELLLS--GANKEAKTNEGWTPLHSAC-KWN  141 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccc-cccccccccHHHHHHhcCchHHHHHHHHc--cCCcccccccCccchhhhh-ccc
Confidence            3678999999999999999999877 44699999999999999999999999988  6788899999999999999 777


Q ss_pred             -----HHHHhcCcccccccCCCCCcHHHHHHHcCCCc-hHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 043183           88 -----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKD-MPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALA  161 (564)
Q Consensus        88 -----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~-iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa  161 (564)
                           -.|+.++.++ +.......||||+||...+.. .+.+|+              ......+...+..+.||+.+|-
T Consensus       142 N~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll--------------~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLL--------------HDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             chhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHh--------------hccccChhhhcCccchHHHHHH
Confidence                 7788888764 555666789999999887754 445553              2333334567889999999998


Q ss_pred             hCC
Q 043183          162 RKN  164 (564)
Q Consensus       162 ~~g  164 (564)
                      +.+
T Consensus       207 RT~  209 (228)
T KOG0512|consen  207 RTS  209 (228)
T ss_pred             Hhh
Confidence            876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.63  E-value=2.6e-15  Score=149.24  Aligned_cols=131  Identities=12%  Similarity=0.112  Sum_probs=107.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCccccccc---cCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCC-CCCCCcHHH
Q 043183            5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIA---IAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKP-NKHGGTALS   80 (564)
Q Consensus         5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~---~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~-d~~G~TpLH   80 (564)
                      ..++||.|++.|+.++++.|++.+.+ ++..   .+..|.||||+|+..|+.+++++|+++  +++++.+ +..|.||||
T Consensus        33 ~~~lL~~A~~~~~~eivk~LL~~GAd-iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~--GADVN~~~~~~g~TpLh  109 (300)
T PHA02884         33 IANILYSSIKFHYTDIIDAILKLGAD-PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY--GADVNRYAEEAKITPLY  109 (300)
T ss_pred             CCHHHHHHHHcCCHHHHHHHHHCCCC-ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCcCcccCCCCCCHHH
Confidence            34577888888999999999999876 3222   146899999999999999999999998  6788875 468999999


Q ss_pred             HHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCc
Q 043183           81 MLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCET  155 (564)
Q Consensus        81 ~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~T  155 (564)
                      +|+ ..|     +.|++.+.+ ++.+|..|.||||+|+..++.+++..+.+                    ...+..+.+
T Consensus       110 ~Aa-~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~--------------------~~~~~~~~~  167 (300)
T PHA02884        110 ISV-LHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICD--------------------NEISNFYKH  167 (300)
T ss_pred             HHH-HcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcC--------------------CcccccccC
Confidence            999 898     788888755 57789999999999999988887755421                    235778889


Q ss_pred             HHHHH
Q 043183          156 PLHAL  160 (564)
Q Consensus       156 pLh~A  160 (564)
                      |++++
T Consensus       168 ~~~~~  172 (300)
T PHA02884        168 PKKIL  172 (300)
T ss_pred             hhhhh
Confidence            99876

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.62  E-value=2.4e-16  Score=169.66  Aligned_cols=204  Identities=15%  Similarity=0.129  Sum_probs=155.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCccccc-CCCCCCCcHHHHHH
Q 043183            5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLA-KPNKHGGTALSMLL   83 (564)
Q Consensus         5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~-~~d~~G~TpLH~Aa   83 (564)
                      -.|+|-.||..|+.|.|+.|+.++.+.  .-.|+.|.+||.+|+..||..+|+.|++.  ..+++ ..|+.+.|+|.+||
T Consensus       757 ~~t~LT~acaggh~e~vellv~rgani--ehrdkkgf~plImaatagh~tvV~~llk~--ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANI--EHRDKKGFVPLIMAATAGHITVVQDLLKA--HADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccc--cccccccchhhhhhcccCchHHHHHHHhh--hhhhhhhcccccCceEEEec
Confidence            468899999999999999999987763  44688999999999999999999999988  34433 46778999999999


Q ss_pred             Hhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH---------------------cccCCHHHHHH
Q 043183           84 HLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS---------------------MNMLLPDVALQ  137 (564)
Q Consensus        84 ~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~---------------------~~~~~~~i~~~  137 (564)
                       ..|     +.|+..+.. -..+|....|||.+|...|..++++.|+.                     .-.++...++.
T Consensus       833 -sggr~~vvelLl~~gan-kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~  910 (2131)
T KOG4369|consen  833 -SGGRTRVVELLLNAGAN-KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLS  910 (2131)
T ss_pred             -CCCcchHHHHHHHhhcc-ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHH
Confidence             777     667776643 35567778899999999999999999987                     23445556666


Q ss_pred             HHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHh
Q 043183          138 LCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEIS  217 (564)
Q Consensus       138 Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~  217 (564)
                      |++.+.++.....-+.+|+|-+|+..|+.                                +++..|+     ...+.+.
T Consensus       911 ll~~gsdiNaqIeTNrnTaltla~fqgr~--------------------------------evv~lLL-----a~~anve  953 (2131)
T KOG4369|consen  911 LLQPGSDINAQIETNRNTALTLALFQGRP--------------------------------EVVFLLL-----AAQANVE  953 (2131)
T ss_pred             HhcccchhccccccccccceeeccccCcc--------------------------------hHHHHHH-----HHhhhhh
Confidence            66666666555555666677777666654                                3444332     2334566


Q ss_pred             hhhcCCchHHHHHHHcCCHHHHHHHHHhCCCccc
Q 043183          218 RLISKPGALIFDAAKQGNVGFLLILTREYPNLHI  251 (564)
Q Consensus       218 ~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~  251 (564)
                      .+-+.|.|||+-+|..|.+|+=++||.+|+|...
T Consensus       954 hRaktgltplme~AsgGyvdvg~~li~~gad~na  987 (2131)
T KOG4369|consen  954 HRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNA  987 (2131)
T ss_pred             hhcccCCcccchhhcCCccccchhhhhccccccc
Confidence            7778889999999999999999999998888744

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.60  E-value=1.9e-14  Score=153.39  Aligned_cols=217  Identities=14%  Similarity=0.129  Sum_probs=146.2

Q ss_pred             CCCcHHHHHHH---cCCHHHHHHHHHhCcccccccc---CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCc
Q 043183            4 SRRLQTYRAAL---NGDWAVAKSIYDVYEGEIGIAI---AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGT   77 (564)
Q Consensus         4 ~g~t~Lh~Aa~---~G~~~~v~~Ll~~~~~~l~~~~---~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~T   77 (564)
                      -|.|.||.|..   .++.++++.|++..|..+++..   .-.|.||||+|+.+.+.++|++|++.  ++|++.       
T Consensus       142 ~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~--gADV~a-------  212 (782)
T KOG3676|consen  142 TGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAA--GADVHA-------  212 (782)
T ss_pred             hhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHc--CCchhh-------
Confidence            48999999987   4567999999999988664432   35799999999999999999999998  555532       


Q ss_pred             HHHHHHHhchHHHHhcCc-ccccccC-----CCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCC
Q 043183           78 ALSMLLHLEGRVMMKHNR-SIAMVRD-----HNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAG  151 (564)
Q Consensus        78 pLH~Aa~~~G~~Ll~~~~-~~~~~~d-----~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~  151 (564)
                          .|  .|......+. .....+|     -.|+.||.+||-.++.|++++|+              + .+..++.+|.
T Consensus       213 ----Ra--~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl--------------~-~gAd~~aqDS  271 (782)
T KOG3676|consen  213 ----RA--CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL--------------A-HGADPNAQDS  271 (782)
T ss_pred             ----Hh--hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH--------------h-cCCCCCcccc
Confidence                22  2311111100 0001111     24899999999999999999986              3 4455599999


Q ss_pred             CCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHH
Q 043183          152 DCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAA  231 (564)
Q Consensus       152 ~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa  231 (564)
                      +|+|.||..+..-                                ..++.+.+++..  .+ .....+|+.|-|||-+||
T Consensus       272 ~GNTVLH~lVi~~--------------------------------~~~My~~~L~~g--a~-~l~~v~N~qgLTPLtLAa  316 (782)
T KOG3676|consen  272 NGNTVLHMLVIHF--------------------------------VTEMYDLALELG--AN-ALEHVRNNQGLTPLTLAA  316 (782)
T ss_pred             CCChHHHHHHHHH--------------------------------HHHHHHHHHhcC--CC-ccccccccCCCChHHHHH
Confidence            9999999998753                                224555443321  12 235678899999999999


Q ss_pred             HcCCHHHHHHHHHhCCCccccccccc-chH--HHh---hcCCchHHHHHhcCCCCccccc
Q 043183          232 KQGNVGFLLILTREYPNLHISYRRFE-SSG--AHL---QTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       232 ~~g~~~iv~~LL~~~~~~~~~~~r~~-~i~--n~~---~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      +-|+.++.+++++......|.-..-. ..+  +.+   .+-++.|.+.+.....+...++
T Consensus       317 klGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg~~~eHl~Ll  376 (782)
T KOG3676|consen  317 KLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYGIKNEHLELL  376 (782)
T ss_pred             HhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcCCcHHHHHHH
Confidence            99999999999988433322210000 000  111   4677788887766544444444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.60  E-value=1.8e-15  Score=142.05  Aligned_cols=105  Identities=20%  Similarity=0.207  Sum_probs=92.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |-.|.+|||+||+.|+..+|+.|+..+...  +..|...+||||+|+..||.++|+.|++.  .+|++..|..|+|||||
T Consensus        31 ddhgfsplhwaakegh~aivemll~rgarv--n~tnmgddtplhlaaahghrdivqkll~~--kadvnavnehgntplhy  106 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLSRGARV--NSTNMGDDTPLHLAAAHGHRDIVQKLLSR--KADVNAVNEHGNTPLHY  106 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHhccccc--ccccCCCCcchhhhhhcccHHHHHHHHHH--hcccchhhccCCCchhh
Confidence            457999999999999999999999998763  44577789999999999999999999998  77899999999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVA  112 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~A  112 (564)
                      || -.|     +-|+..+ ..++++|++|.|||.-|
T Consensus       107 ac-fwgydqiaedli~~g-a~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  107 AC-FWGYDQIAEDLISCG-AAVNICNKKGMTPLDKA  140 (448)
T ss_pred             hh-hhcHHHHHHHHHhcc-ceeeecccCCCCchhhh
Confidence            99 999     5555555 56799999999999876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.58  E-value=7.3e-15  Score=128.36  Aligned_cols=137  Identities=17%  Similarity=0.133  Sum_probs=102.2

Q ss_pred             HHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCC
Q 043183           79 LSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDC  153 (564)
Q Consensus        79 LH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G  153 (564)
                      +-+|+ ..+     +.|++..++.++.+|.+|.||||-|+.+|+.+||+.|+.               .+...+.+...|
T Consensus        67 ~lwaa-e~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~---------------~gAn~~a~T~~G  130 (228)
T KOG0512|consen   67 LLWAA-EKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLL---------------SGANKEAKTNEG  130 (228)
T ss_pred             HHHHH-hhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHH---------------ccCCcccccccC
Confidence            45677 565     888888888899999999999999999999999998862               333447788899


Q ss_pred             CcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHc
Q 043183          154 ETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQ  233 (564)
Q Consensus       154 ~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~  233 (564)
                      +||||.||...+.                                +++..|+     ..++++|...+...||||+||..
T Consensus       131 WTPLhSAckWnN~--------------------------------~va~~LL-----qhgaDVnA~t~g~ltpLhlaa~~  173 (228)
T KOG0512|consen  131 WTPLHSACKWNNF--------------------------------EVAGRLL-----QHGADVNAQTKGLLTPLHLAAGN  173 (228)
T ss_pred             ccchhhhhcccch--------------------------------hHHHHHH-----hccCcccccccccchhhHHhhcc
Confidence            9999999998865                                4444443     46778888888889999999987


Q ss_pred             CCHHH-HHHHHHhCCCcccccccccchHHHh-hcCCchHHHHHhcCC
Q 043183          234 GNVGF-LLILTREYPNLHISYRRFESSGAHL-QTRNNILHLAAMLPP  278 (564)
Q Consensus       234 g~~~i-v~~LL~~~~~~~~~~~r~~~i~n~~-~~G~TpLhlAa~~~~  278 (564)
                      .+... +++|+. .+.+..         ... +.+.||+.+|-+.+.
T Consensus       174 rn~r~t~~~Ll~-dryi~p---------g~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  174 RNSRDTLELLLH-DRYIHP---------GLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             cchHHHHHHHhh-ccccCh---------hhhcCccchHHHHHHHhhh
Confidence            76554 555543 333211         122 788999999987764

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.53  E-value=2.8e-13  Score=144.54  Aligned_cols=194  Identities=17%  Similarity=0.092  Sum_probs=142.8

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCC-------cccccCCCCCCCcHHHHHHHhch--------HHHHhcCcccccc----cC
Q 043183           42 TALRIAAAGKYIEFLKELVKIME-------AEDLAKPNKHGGTALSMLLHLEG--------RVMMKHNRSIAMV----RD  102 (564)
Q Consensus        42 TpLh~Aa~~g~~~iv~~Ll~~~~-------~~~l~~~d~~G~TpLH~Aa~~~G--------~~Ll~~~~~~~~~----~d  102 (564)
                      .++..|...+..+....|++...       .-+++.+...|.|.||.|. .+.        +.|++..|.+++.    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~l-L~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKAL-LNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHH-hcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            67788888888888888776642       2357778889999999999 865        7778877766543    22


Q ss_pred             CCCCcHHHHHHHcCCCchHHHHHHcccCCHHHH-HHHHHcCCccc----cccC-----CCCCcHHHHHHhCCCCCccccc
Q 043183          103 HNQTLPIDVAASLGHKDMPICMVSMNMLLPDVA-LQLCRDRPKLA----TLRA-----GDCETPLHALARKNLTSSNFIN  172 (564)
Q Consensus       103 ~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~-~~Ll~~~~~~~----~~~d-----~~G~TpLh~Aa~~g~~~~~f~~  172 (564)
                      -.|.||||+|+.+.+.++|++|++...+-..-+ -...  .++.-    ...|     --|+.||-+||..++.      
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF--~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~------  253 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFF--CPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQP------  253 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcccc--CcccccccccccCCcceeeeccCchHHHHHcCCH------
Confidence            359999999999999999999987221100000 0000  00100    0011     1488999999998865      


Q ss_pred             ccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCC--cc
Q 043183          173 QNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPN--LH  250 (564)
Q Consensus       173 ~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~--~~  250 (564)
                                                ++++.|++     .++|++.+|..|+|.||..+.+-..++.+++++++++  ..
T Consensus       254 --------------------------eivrlLl~-----~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~  302 (782)
T KOG3676|consen  254 --------------------------EIVRLLLA-----HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEH  302 (782)
T ss_pred             --------------------------HHHHHHHh-----cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence                                      67776654     7889999999999999999999999999999999988  21


Q ss_pred             cccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          251 ISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       251 ~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      .. |         ++|-|||-+||+.|..++++.+
T Consensus       303 v~-N---------~qgLTPLtLAaklGk~emf~~i  327 (782)
T KOG3676|consen  303 VR-N---------NQGLTPLTLAAKLGKKEMFQHI  327 (782)
T ss_pred             cc-c---------cCCCChHHHHHHhhhHHHHHHH
Confidence            11 2         9999999999999998877654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.53  E-value=8.3e-15  Score=137.62  Aligned_cols=82  Identities=22%  Similarity=0.306  Sum_probs=42.8

Q ss_pred             cccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHc
Q 043183           67 DLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRD  141 (564)
Q Consensus        67 ~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~  141 (564)
                      |++..|..|.+|||+|| +.|     +.|+..+.. ++..|....||||+|+.+||.++|+.|++              .
T Consensus        26 dln~gddhgfsplhwaa-kegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll~--------------~   89 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAA-KEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLLS--------------R   89 (448)
T ss_pred             ccccccccCcchhhhhh-hcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHHH--------------H
Confidence            45555555566666665 555     444444432 34445545556666555555555555532              2


Q ss_pred             CCccccccCCCCCcHHHHHHhCCC
Q 043183          142 RPKLATLRAGDCETPLHALARKNL  165 (564)
Q Consensus       142 ~~~~~~~~d~~G~TpLh~Aa~~g~  165 (564)
                      . ..++..++.|+|||||||..|.
T Consensus        90 k-advnavnehgntplhyacfwgy  112 (448)
T KOG0195|consen   90 K-ADVNAVNEHGNTPLHYACFWGY  112 (448)
T ss_pred             h-cccchhhccCCCchhhhhhhcH
Confidence            2 2235555555555555555553

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.48  E-value=4.2e-13  Score=116.12  Aligned_cols=118  Identities=26%  Similarity=0.342  Sum_probs=102.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |.+|.||||.|+..|+.++++.|++.++..  ...+..|.||||.|+..++.++++.|++.+  ..++..+..|.||+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~--~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~~l~~   79 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV--NAKDNDGRTPLHLAAKNGHLEIVKLLLEKG--ADVNARDKDGNTPLHL   79 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCCHHHH
Confidence            678999999999999999999999987763  345789999999999999999999999984  4677788999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMV  125 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll  125 (564)
                      |+ ..+     +.|++.+. .....|..|.||+++|...++.+++++|+
T Consensus        80 a~-~~~~~~~~~~L~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AA-RNGNLDVVKLLLKHGA-DVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HH-HcCcHHHHHHHHHcCC-CCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99 888     67777653 35667888999999999999999998873

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.43  E-value=5.1e-13  Score=115.60  Aligned_cols=123  Identities=22%  Similarity=0.329  Sum_probs=98.1

Q ss_pred             ccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchH
Q 043183          100 VRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIF  179 (564)
Q Consensus       100 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~  179 (564)
                      .+|.+|.||||+|+..|+.+++++|++              .++.. ...|..|.||||.|+..++.             
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~--------------~~~~~-~~~~~~g~~~l~~a~~~~~~-------------   53 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLE--------------NGADV-NAKDNDGRTPLHLAAKNGHL-------------   53 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHH--------------cCCCC-CccCCCCCcHHHHHHHcCCH-------------
Confidence            356789999999999999999999863              44433 67888999999999999864             


Q ss_pred             HHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccch
Q 043183          180 RRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESS  259 (564)
Q Consensus       180 ~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i  259 (564)
                                         ++++.+++.     +...+..+..|.||+|+|++.++.+++++|++.+.+.....      
T Consensus        54 -------------------~~~~~ll~~-----~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~------  103 (126)
T cd00204          54 -------------------EIVKLLLEK-----GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD------  103 (126)
T ss_pred             -------------------HHHHHHHHc-----CCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccC------
Confidence                               566666543     22556777889999999999999999999999876653332      


Q ss_pred             HHHhhcCCchHHHHHhcCCCCcccc
Q 043183          260 GAHLQTRNNILHLAAMLPPQDRLNI  284 (564)
Q Consensus       260 ~n~~~~G~TpLhlAa~~~~~~~~~~  284 (564)
                          ..|.||+|+|...++.+++++
T Consensus       104 ----~~~~~~l~~~~~~~~~~~~~~  124 (126)
T cd00204         104 ----KDGRTPLHLAAKNGHLEVVKL  124 (126)
T ss_pred             ----CCCCCHHHHHHhcCCHHHHHH
Confidence                889999999999987665543

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.40  E-value=1.5e-12  Score=106.44  Aligned_cols=79  Identities=28%  Similarity=0.381  Sum_probs=67.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-
Q 043183            9 TYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-   87 (564)
Q Consensus         9 Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-   87 (564)
                      ||.||+.|+.++++.|++.+.+.     +. |+||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+ ..| 
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-----~~-~~~~l~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-----NL-GNTALHYAAENGNLEIVKLLLEN--GADINSQDKNGNTALHYAA-ENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-----TS-SSBHHHHHHHTTTHHHHHHHHHT--TTCTT-BSTTSSBHHHHHH-HTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-----CC-CCCHHHHHHHcCCHHHHHHHHHh--cccccccCCCCCCHHHHHH-HcCC
Confidence            79999999999999999976542     22 89999999999999999999998  5678888999999999999 888 


Q ss_pred             ----HHHHhcCcc
Q 043183           88 ----RVMMKHNRS   96 (564)
Q Consensus        88 ----~~Ll~~~~~   96 (564)
                          +.|++++.+
T Consensus        72 ~~~~~~Ll~~g~~   84 (89)
T PF12796_consen   72 LEIVKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHHHHTTT-
T ss_pred             HHHHHHHHHcCCC
Confidence                777777654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.37  E-value=1.6e-12  Score=106.41  Aligned_cols=86  Identities=17%  Similarity=0.249  Sum_probs=69.9

Q ss_pred             HHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCC
Q 043183          109 IDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAE  188 (564)
Q Consensus       109 Lh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~  188 (564)
                      ||+||+.|+.+++++|++              .+.+. +   . |+||||+|+..|+.                      
T Consensus         1 L~~A~~~~~~~~~~~ll~--------------~~~~~-~---~-~~~~l~~A~~~~~~----------------------   39 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE--------------KGADI-N---L-GNTALHYAAENGNL----------------------   39 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH--------------TTSTT-T---S-SSBHHHHHHHTTTH----------------------
T ss_pred             CHHHHHcCCHHHHHHHHH--------------CcCCC-C---C-CCCHHHHHHHcCCH----------------------
Confidence            799999999999999864              33333 1   1 89999999999964                      


Q ss_pred             cHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcc
Q 043183          189 DVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLH  250 (564)
Q Consensus       189 h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~  250 (564)
                                ++++.|++     .+.+++.+|.+|+||||+|+.+|+.+++++|+++|+++.
T Consensus        40 ----------~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   40 ----------EIVKLLLE-----NGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVN   86 (89)
T ss_dssp             ----------HHHHHHHH-----TTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TT
T ss_pred             ----------HHHHHHHH-----hcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                      67777655     456778889999999999999999999999999998873

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.25  E-value=1.2e-10  Score=111.79  Aligned_cols=127  Identities=21%  Similarity=0.270  Sum_probs=103.5

Q ss_pred             cccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCC-----CchHHHHHHcccCCHHHHH
Q 043183           67 DLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGH-----KDMPICMVSMNMLLPDVAL  136 (564)
Q Consensus        67 ~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~-----~~iv~~Ll~~~~~~~~i~~  136 (564)
                      .....+..+.+++|.|+ ..+     +.++..+.+. +.+|..|.||||+|+..++     .+++++|            
T Consensus        65 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~l------------  130 (235)
T COG0666          65 HLAARDLDGRLPLHSAA-SKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLL------------  130 (235)
T ss_pred             ccccCCccccCHHHHHH-HcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHH------------
Confidence            34556777899999998 888     5667777665 8899999999999999999     6777776            


Q ss_pred             HHHHcCC--ccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChh
Q 043183          137 QLCRDRP--KLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDS  214 (564)
Q Consensus       137 ~Ll~~~~--~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~  214 (564)
                        ++.+.  +....+|.+|.||||+|+..|+.                                ++++.+++     .+.
T Consensus       131 --l~~g~~~~~~~~~~~~g~tpl~~A~~~~~~--------------------------------~~~~~ll~-----~~~  171 (235)
T COG0666         131 --LEAGADLDVNNLRDEDGNTPLHWAALNGDA--------------------------------DIVELLLE-----AGA  171 (235)
T ss_pred             --HHcCCCCCCccccCCCCCchhHHHHHcCch--------------------------------HHHHHHHh-----cCC
Confidence              45666  57788899999999999999965                                45555543     355


Q ss_pred             hHhhhhcCCchHHHHHHHcCCHHHHHHHHHhC
Q 043183          215 EISRLISKPGALIFDAAKQGNVGFLLILTREY  246 (564)
Q Consensus       215 ~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~  246 (564)
                      +.+..+..|.|++|.|+..|+.++++.+++.+
T Consensus       172 ~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         172 DPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            66777999999999999999999999999865

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.20  E-value=4.1e-11  Score=88.00  Aligned_cols=54  Identities=28%  Similarity=0.278  Sum_probs=43.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHH
Q 043183            5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELV   60 (564)
Q Consensus         5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll   60 (564)
                      |.||||.||+.|+.++++.|++.+.+ + ..+|.+|.||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-i-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-I-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-T-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-C-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            78999999999999999999998765 4 445899999999999999999999986

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.20  E-value=9.5e-11  Score=112.42  Aligned_cols=119  Identities=24%  Similarity=0.249  Sum_probs=103.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCC-----HHHHHHHHHcCCc-ccccCCCCCCCc
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKY-----IEFLKELVKIMEA-EDLAKPNKHGGT   77 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~-----~~iv~~Ll~~~~~-~~l~~~d~~G~T   77 (564)
                      .+.+++|.++..|+.+.++.++..+.+.  ...+.+|.||||+|+..|+     .++++.|++.+.. ...+.+|..|+|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~t  149 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGADV--NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNT  149 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCCCc--ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCc
Confidence            4789999999999999999999887764  5579999999999999999     9999999999531 367778999999


Q ss_pred             HHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           78 ALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        78 pLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      |||+|+ ..|     +.+++.+++ +..++..|.||++.|+..++.++++.++.
T Consensus       150 pl~~A~-~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         150 PLHWAA-LNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             hhHHHH-HcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHh
Confidence            999999 999     677777654 56678999999999999999999999864

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.19  E-value=1.8e-11  Score=90.48  Aligned_cols=56  Identities=25%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             HHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183           24 IYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML   82 (564)
Q Consensus        24 Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A   82 (564)
                      ||+.++..+ ...|..|.||||+||..|+.++|++|++.  +.+++.+|..|+||||+|
T Consensus         1 LL~~~~~~~-n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~--g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADV-NAQDKYGNTPLHWAARYGHSEVVRLLLQN--GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--T-T---TTS--HHHHHHHHT-HHHHHHHHHC--T--TT---TTS--HHHH-
T ss_pred             CCccCcCCC-cCcCCCCCcHHHHHHHcCcHHHHHHHHHC--cCCCCCCcCCCCCHHHhC
Confidence            456664444 45699999999999999999999999966  788999999999999997

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.18  E-value=1.8e-11  Score=90.52  Aligned_cols=53  Identities=13%  Similarity=0.109  Sum_probs=33.0

Q ss_pred             CChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHH
Q 043183          211 LSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLA  273 (564)
Q Consensus       211 ~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlA  273 (564)
                      .++.+++.+|..|+||||+||++|+.+++++|++.+.++....          ++|+||||+|
T Consensus         4 ~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d----------~~G~Tpl~~A   56 (56)
T PF13857_consen    4 HGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKD----------KDGQTPLHYA   56 (56)
T ss_dssp             --T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT-------------TTS--HHHH-
T ss_pred             cCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCc----------CCCCCHHHhC
Confidence            3457889999999999999999999999999999998884433          9999999998

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.13  E-value=1.3e-10  Score=117.64  Aligned_cols=114  Identities=15%  Similarity=0.139  Sum_probs=96.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch
Q 043183            8 QTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG   87 (564)
Q Consensus         8 ~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G   87 (564)
                      .|..|+..|.++.|+.++.+-.+-  ...|.+|-|+||-|+..||.+||++||+.  +.+++..|.+|+||||+|| ..+
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~Dp--SqpNdEGITaLHNAiCaghyeIVkFLi~~--ganVNa~DSdGWTPLHCAA-SCN  627 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDP--SQPNDEGITALHNAICAGHYEIVKFLIEF--GANVNAADSDGWTPLHCAA-SCN  627 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCC--CCCCccchhHHhhhhhcchhHHHHHHHhc--CCcccCccCCCCchhhhhh-hcC
Confidence            467899999999999999874332  44688999999999999999999999999  7889999999999999999 776


Q ss_pred             -----HHHHhcCcccccccCCCCCcHHHHH--HHcCCCchHHHHHH
Q 043183           88 -----RVMMKHNRSIAMVRDHNQTLPIDVA--ASLGHKDMPICMVS  126 (564)
Q Consensus        88 -----~~Ll~~~~~~~~~~d~~G~TpLh~A--a~~g~~~iv~~Ll~  126 (564)
                           +.|++.+..+...+=.++.||..-+  ...|..++.+||..
T Consensus       628 nv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  628 NVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             chHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence                 8999999887777777888887654  34677888899875

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.05  E-value=2.7e-10  Score=83.59  Aligned_cols=54  Identities=28%  Similarity=0.314  Sum_probs=41.3

Q ss_pred             CCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHH
Q 043183          153 CETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAK  232 (564)
Q Consensus       153 G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~  232 (564)
                      |+||||+|++.|+.                                ++++.+++     .+.+++.+|.+|.||||+|++
T Consensus         1 g~t~lh~A~~~g~~--------------------------------~~~~~Ll~-----~~~din~~d~~g~t~lh~A~~   43 (54)
T PF13637_consen    1 GRTPLHWAARSGNL--------------------------------EIVKLLLE-----HGADINAQDEDGRTPLHYAAK   43 (54)
T ss_dssp             SSBHHHHHHHTT-H--------------------------------HHHHHHHH-----TTSGTT-B-TTS--HHHHHHH
T ss_pred             CChHHHHHHHhCCH--------------------------------HHHHHHHH-----CCCCCCCCCCCCCCHHHHHHH
Confidence            78999999999965                                66777654     256788899999999999999


Q ss_pred             cCCHHHHHHHH
Q 043183          233 QGNVGFLLILT  243 (564)
Q Consensus       233 ~g~~~iv~~LL  243 (564)
                      +|+.+++++||
T Consensus        44 ~g~~~~~~~Ll   54 (54)
T PF13637_consen   44 NGNIDIVKFLL   54 (54)
T ss_dssp             TT-HHHHHHHH
T ss_pred             ccCHHHHHHHC
Confidence            99999999986

...

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.00  E-value=7.7e-10  Score=87.00  Aligned_cols=90  Identities=16%  Similarity=0.083  Sum_probs=67.6

Q ss_pred             HHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCC
Q 043183          109 IDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAE  188 (564)
Q Consensus       109 Lh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~  188 (564)
                      ..+++.+|..+-|+-              ....+-+...  -..|+||||+||..|..                      
T Consensus         6 ~~W~vkNG~~DeVk~--------------~v~~g~nVn~--~~ggR~plhyAAD~GQl----------------------   47 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQ--------------SVNEGLNVNE--IYGGRTPLHYAADYGQL----------------------   47 (117)
T ss_pred             HhhhhccCcHHHHHH--------------HHHccccHHH--HhCCcccchHhhhcchH----------------------
Confidence            445555665555553              3444433322  23899999999999965                      


Q ss_pred             cHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCccc
Q 043183          189 DVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHI  251 (564)
Q Consensus       189 h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~  251 (564)
                                +++++++.     -+++++.+|+.|-|||.-|+..||.++|++||+.|++-..
T Consensus        48 ----------~ilefli~-----iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   48 ----------SILEFLIS-----IGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTI   95 (117)
T ss_pred             ----------HHHHHHHH-----hccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccce
Confidence                      67777654     4668889999999999999999999999999999998543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.96  E-value=2.7e-09  Score=83.99  Aligned_cols=98  Identities=19%  Similarity=0.237  Sum_probs=79.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHh
Q 043183            6 RLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHL   85 (564)
Q Consensus         6 ~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~   85 (564)
                      +-...+++++|..+.|+....++-+ ++.  .-.|+||||+|+..|+.+++++|+..  +++++.+|+.|-|||--|+ .
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~n-Vn~--~~ggR~plhyAAD~GQl~ilefli~i--GA~i~~kDKygITPLLsAv-w   76 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLN-VNE--IYGGRTPLHYAADYGQLSILEFLISI--GANIQDKDKYGITPLLSAV-W   76 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHcccc-HHH--HhCCcccchHhhhcchHHHHHHHHHh--ccccCCccccCCcHHHHHH-H
Confidence            3456789999999999999988743 323  23799999999999999999999998  7789999999999999999 8


Q ss_pred             ch-----HHHHhcCcccccccCCCCCcHHH
Q 043183           86 EG-----RVMMKHNRSIAMVRDHNQTLPID  110 (564)
Q Consensus        86 ~G-----~~Ll~~~~~~~~~~d~~G~TpLh  110 (564)
                      .|     +.|+..+.+ -..+..+|.+.+.
T Consensus        77 EGH~~cVklLL~~GAd-rt~~~PdG~~~~e  105 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGAD-RTIHAPDGTALIE  105 (117)
T ss_pred             HhhHHHHHHHHHcCcc-cceeCCCchhHHh
Confidence            88     788887765 3455566765544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.94  E-value=2.5e-09  Score=119.29  Aligned_cols=102  Identities=20%  Similarity=0.207  Sum_probs=83.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhc
Q 043183            7 LQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLE   86 (564)
Q Consensus         7 t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~   86 (564)
                      ++|+.|+..|+.+.++.|++.+.+ + +..|.+|.||||+||..|+.++|++|++.  +.+++.+|..|.||||+|+ ..
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad-i-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~--Gadvn~~d~~G~TpLh~A~-~~  158 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD-P-NCRDYDGRTPLHIACANGHVQVVRVLLEF--GADPTLLDKDGKTPLELAE-EN  158 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-C-CCcCCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH-HC
Confidence            358999999999999999998765 3 44688999999999999999999999998  6788899999999999999 88


Q ss_pred             h-----HHHHhcC------cccccccCCCCCcHHHHHH
Q 043183           87 G-----RVMMKHN------RSIAMVRDHNQTLPIDVAA  113 (564)
Q Consensus        87 G-----~~Ll~~~------~~~~~~~d~~G~TpLh~Aa  113 (564)
                      |     +.|++++      .......+..|.+|+..+.
T Consensus       159 g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        159 GFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            8     7777761      1223445666777766554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.93  E-value=5.3e-09  Score=98.95  Aligned_cols=113  Identities=16%  Similarity=0.168  Sum_probs=97.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccC-CCCCCCcHHHHHHH
Q 043183            6 RLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAK-PNKHGGTALSMLLH   84 (564)
Q Consensus         6 ~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~-~d~~G~TpLH~Aa~   84 (564)
                      .+||..++..|+.+.+..||+.-.+ + +..|.+|.|+|..|+..|+.++|+.|++.+  .|+|. ++..++||||+|| 
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~-v-n~~D~sGMs~LahAaykGnl~~v~lll~~g--aDvN~~qhg~~YTpLmFAA-   87 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQ-V-NQRDPSGMSVLAHAAYKGNLTLVELLLELG--ADVNDKQHGTLYTPLMFAA-   87 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhh-h-hccCCCcccHHHHHHhcCcHHHHHHHHHhC--CCcCcccccccccHHHHHH-
Confidence            5799999999999999999987443 2 457999999999999999999999999994  45443 5667899999999 


Q ss_pred             hch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHH
Q 043183           85 LEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICM  124 (564)
Q Consensus        85 ~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~L  124 (564)
                      .+|     +.|++.+.. ....|.-|+|+-.+||.-|+.++|..+
T Consensus        88 LSGn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             HcCCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHH
Confidence            999     888888754 466788899999999999999999876

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.88  E-value=5e-09  Score=116.92  Aligned_cols=109  Identities=16%  Similarity=0.121  Sum_probs=86.0

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcC
Q 043183           42 TALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLG  116 (564)
Q Consensus        42 TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g  116 (564)
                      +.||.|+..|+.+.++.|++.  +.+++.+|..|.||||+|+ ..|     +.|++.+.+ ++.+|.+|.||||+|+..|
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~--Gadin~~d~~G~TpLh~Aa-~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG--GADPNCRDYDGRTPLHIAC-ANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHHH-HCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCC
Confidence            358899999999999999998  6788999999999999999 999     888888755 5789999999999999999


Q ss_pred             CCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHh
Q 043183          117 HKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALAR  162 (564)
Q Consensus       117 ~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~  162 (564)
                      +.+++++|++.....       . .........+.+|.+|+..+..
T Consensus       160 ~~~iv~~Ll~~~~~~-------~-~~ga~~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        160 FREVVQLLSRHSQCH-------F-ELGANAKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             cHHHHHHHHhCCCcc-------c-ccCCCCCccccCCCCccchhhh
Confidence            999999997521100       0 1122334566778777765543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.82  E-value=4.8e-09  Score=106.61  Aligned_cols=112  Identities=13%  Similarity=-0.001  Sum_probs=83.9

Q ss_pred             cCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhh
Q 043183          129 MLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKV  208 (564)
Q Consensus       129 ~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~  208 (564)
                      .|-+|+|..++..-.+ ....|..|-|+||-|+..|+.                                +||++|++  
T Consensus       560 eGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghy--------------------------------eIVkFLi~--  604 (752)
T KOG0515|consen  560 EGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHY--------------------------------EIVKFLIE--  604 (752)
T ss_pred             cchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchh--------------------------------HHHHHHHh--
Confidence            3444555555554433 367889999999999999964                                67777755  


Q ss_pred             ccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhc--CCCCcccccc
Q 043183          209 ALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAML--PPQDRLNIVS  286 (564)
Q Consensus       209 l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~--~~~~~~~~l~  286 (564)
                         .+.++|..|++|+||||+||..++..+++.|++.|+.++..+.         .++.||..-+-.+  |..++.++|.
T Consensus       605 ---~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTl---------SDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  605 ---FGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTL---------SDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             ---cCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeec---------ccccchhhhcchhhhhHHHHHHHHH
Confidence               5678999999999999999999999999999999998865443         7888887665433  4444555553


Q ss_pred             c
Q 043183          287 G  287 (564)
Q Consensus       287 g  287 (564)
                      |
T Consensus       673 ~  673 (752)
T KOG0515|consen  673 G  673 (752)
T ss_pred             H
Confidence            3

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.71  E-value=1.5e-08  Score=95.88  Aligned_cols=120  Identities=16%  Similarity=0.112  Sum_probs=94.5

Q ss_pred             CCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhh
Q 043183          105 QTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFN  184 (564)
Q Consensus       105 G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~  184 (564)
                      -..||.-+...|..+....||+              . ...++.+|..|.|||..|+.+|+.                  
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs--------------~-vr~vn~~D~sGMs~LahAaykGnl------------------   58 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLS--------------T-VRQVNQRDPSGMSVLAHAAYKGNL------------------   58 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHH--------------H-hhhhhccCCCcccHHHHHHhcCcH------------------
Confidence            3568888888888877777763              2 233488999999999999999976                  


Q ss_pred             hcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHh-
Q 043183          185 LGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHL-  263 (564)
Q Consensus       185 ~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~-  263 (564)
                                    ++++.+++.    +......++..+.||||.||..|+.++...|++.|+..           .++ 
T Consensus        59 --------------~~v~lll~~----gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~-----------~~vN  109 (396)
T KOG1710|consen   59 --------------TLVELLLEL----GADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARM-----------YLVN  109 (396)
T ss_pred             --------------HHHHHHHHh----CCCcCcccccccccHHHHHHHcCCchHHHHHHhccCcc-----------cccc
Confidence                          566655442    32223356778899999999999999999999999876           333 


Q ss_pred             hcCCchHHHHHhcCCCCcccccc
Q 043183          264 QTRNNILHLAAMLPPQDRLNIVS  286 (564)
Q Consensus       264 ~~G~TpLhlAa~~~~~~~~~~l~  286 (564)
                      .-|+|+-.+||--|+.++|.++.
T Consensus       110 svgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen  110 SVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             chhhhHHHHHHHhcchHHHHHHh
Confidence            78999999999999999998763

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.56  E-value=1.6e-07  Score=96.29  Aligned_cols=113  Identities=19%  Similarity=0.145  Sum_probs=98.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-
Q 043183            9 TYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-   87 (564)
Q Consensus         9 Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-   87 (564)
                      +..|+..+++-.++.....+...+  .++.+..|.||+|+..|+-|+|++|++++.++.+++.|..|.|+||-|+ ..+ 
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll--~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa-~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLL--IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAA-CQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceE--eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHH-Hhcc
Confidence            678899999888888877776643  3578889999999999999999999999877779999999999999998 777 


Q ss_pred             ----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHH
Q 043183           88 ----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMV  125 (564)
Q Consensus        88 ----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll  125 (564)
                          ++|++.+..+ ...|..|.||-.-|-+.|..+...||-
T Consensus       947 r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             hHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHh
Confidence                8888888664 678999999999999999999999984

>PF13606 Ank_3: Ankyrin repeat

Probab=98.45  E-value=1.9e-07  Score=59.09  Aligned_cols=28  Identities=18%  Similarity=0.224  Sum_probs=26.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183          222 KPGALIFDAAKQGNVGFLLILTREYPNL  249 (564)
Q Consensus       222 ~G~TpLh~Aa~~g~~~iv~~LL~~~~~~  249 (564)
                      +|+||||+||+.|+.|++++|+++++|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4899999999999999999999999987

>PF13606 Ank_3: Ankyrin repeat

Probab=98.26  E-value=1.1e-06  Score=55.60  Aligned_cols=24  Identities=38%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHc
Q 043183           39 RGDTALRIAAAGKYIEFLKELVKI   62 (564)
Q Consensus        39 ~g~TpLh~Aa~~g~~~iv~~Ll~~   62 (564)
                      +|+||||+||+.|+.|+|++|++.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~   24 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH   24 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc
Confidence            478888888888888888888887

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.26  E-value=1.3e-06  Score=56.69  Aligned_cols=32  Identities=28%  Similarity=0.358  Sum_probs=25.5

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCcccccCCC
Q 043183           39 RGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPN   72 (564)
Q Consensus        39 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d   72 (564)
                      +|.||||+|+..|+.+++++|++.  +.+++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH--GADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT--TSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC--cCCCCCCC
Confidence            478888888888888888888887  55666555

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.19  E-value=2.2e-06  Score=55.67  Aligned_cols=30  Identities=13%  Similarity=0.251  Sum_probs=27.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCccc
Q 043183          222 KPGALIFDAAKQGNVGFLLILTREYPNLHI  251 (564)
Q Consensus       222 ~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~  251 (564)
                      +|+||||+|+..|+.+++++|+++++++..
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            589999999999999999999999998743

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.18  E-value=2.6e-06  Score=87.64  Aligned_cols=77  Identities=17%  Similarity=0.073  Sum_probs=61.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch
Q 043183            8 QTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG   87 (564)
Q Consensus         8 ~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G   87 (564)
                      |||.++...+.+.....+...........|..|+||||+|+.-|+.+.++.|+..  ++++..+|+.|++|||.|+ ..|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a--~Adv~~kN~~gWs~L~EAv-~~g   99 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA--GADVSIKNNEGWSPLHEAV-STG   99 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc--CCCccccccccccHHHHHH-HcC
Confidence            4888888888887777665544333355688889999999999999999999887  6677888889999999998 888

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.16  E-value=6.4e-06  Score=83.72  Aligned_cols=105  Identities=21%  Similarity=0.296  Sum_probs=79.3

Q ss_pred             CCCCChH------HHHHHhcCCHHHHHHHHHcCCcccccCCC-CCCCcHHHHHHHhch-----HHHHhcCcccccccCCC
Q 043183           37 AKRGDTA------LRIAAAGKYIEFLKELVKIMEAEDLAKPN-KHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHN  104 (564)
Q Consensus        37 ~~~g~Tp------Lh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d-~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~  104 (564)
                      |.+|-|.      ||-.++.|+.++.-.||..  +++.+..+ ..|.||||.|+ +.|     +.|+-.+ ..+...|.+
T Consensus       124 DdD~~~~~~LsrQLhasvRt~nlet~LRll~l--GA~~N~~hpekg~TpLHvAA-k~Gq~~Q~ElL~vYG-AD~~a~d~~  199 (669)
T KOG0818|consen  124 DDDSVTAKDLSKQLHSSVRTGNLETCLRLLSL--GAQANFFHPEKGNTPLHVAA-KAGQILQAELLAVYG-ADPGAQDSS  199 (669)
T ss_pred             CcchhhHHHHHHHHHHHhhcccHHHHHHHHHc--ccccCCCCcccCCchhHHHH-hccchhhhhHHhhcc-CCCCCCCCC
Confidence            4555554      9999999999999999988  45555544 47999999999 999     4444444 557899999


Q ss_pred             CCcHHHHHHHcCCCchHHHHHHcccCCHH-HHHHHHHcCCcc
Q 043183          105 QTLPIDVAASLGHKDMPICMVSMNMLLPD-VALQLCRDRPKL  145 (564)
Q Consensus       105 G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~-i~~~Ll~~~~~~  145 (564)
                      |+||+.+|-..||-++.+.|+++.....| ++-.|..+.|+-
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e~~y~vtDR~~f~lcgrKpDH  241 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVEIQYELTDRLAFYLCGRKPDH  241 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            99999999999999999999885443333 333444555543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.11  E-value=2.3e-06  Score=86.49  Aligned_cols=87  Identities=18%  Similarity=0.197  Sum_probs=78.7

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHH
Q 043183           37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDV  111 (564)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~  111 (564)
                      +.++..++.+|++.|.+..++.+.-.  +.|++.+|.+.+|+||.|| ..|     +.|++.+...+..+|..|+|||.-
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~--g~D~~~~DyD~RTaLHvAA-aEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQ--GMDLETKDYDDRTALHVAA-AEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHh--cccccccccccchhheeec-ccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            44566789999999999999988765  6789999999999999999 999     999999888889999999999999


Q ss_pred             HHHcCCCchHHHHHH
Q 043183          112 AASLGHKDMPICMVS  126 (564)
Q Consensus       112 Aa~~g~~~iv~~Ll~  126 (564)
                      |...+|.+++++|-+
T Consensus       580 A~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEE  594 (622)
T ss_pred             hHhcCcHHHHHHHHH
Confidence            999999999999854

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.09  E-value=5.4e-06  Score=85.29  Aligned_cols=82  Identities=24%  Similarity=0.180  Sum_probs=74.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183            3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML   82 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A   82 (564)
                      .+.+|.||+|++.|+-|+|+++|+++|..+....+..|+|+||-|+..++..+.++|++.  ++.+...|..|.||-.-|
T Consensus       897 ~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvda--gasl~ktd~kg~tp~era  974 (1004)
T KOG0782|consen  897 PDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDA--GASLRKTDSKGKTPQERA  974 (1004)
T ss_pred             cchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhc--chhheecccCCCChHHHH
Confidence            356799999999999999999999999877677789999999999999999999999998  678899999999999888


Q ss_pred             HHhch
Q 043183           83 LHLEG   87 (564)
Q Consensus        83 a~~~G   87 (564)
                      - ..|
T Consensus       975 q-qa~  978 (1004)
T KOG0782|consen  975 Q-QAG  978 (1004)
T ss_pred             H-hcC
Confidence            7 666

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.07  E-value=2.6e-06  Score=91.35  Aligned_cols=80  Identities=19%  Similarity=0.053  Sum_probs=71.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |.-|+|+||.|+..|..+++++||+++.+. ..+....|.||||-|...|++|++-.||++  +..+..+|++|..||..
T Consensus        49 D~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~--g~SL~i~Dkeglsplq~  125 (1267)
T KOG0783|consen   49 DRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSK--GRSLRIKDKEGLSPLQF  125 (1267)
T ss_pred             HhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhc--CCceEEecccCCCHHHH
Confidence            556999999999999999999999997764 354567899999999999999999999999  57899999999999998


Q ss_pred             HHHh
Q 043183           82 LLHL   85 (564)
Q Consensus        82 Aa~~   85 (564)
                      -+ +
T Consensus       126 ~~-r  128 (1267)
T KOG0783|consen  126 LS-R  128 (1267)
T ss_pred             Hh-h
Confidence            88 5

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.99  E-value=1.6e-05  Score=82.08  Aligned_cols=83  Identities=14%  Similarity=0.219  Sum_probs=67.7

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcC
Q 043183           42 TALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLG  116 (564)
Q Consensus        42 TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g  116 (564)
                      -|||.++.....+-...++..-....++.+|..|+||||+|+ .-|     +.|+..+.+ +..+|++|++|||.|+..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV-~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAV-RLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHH-HhcCHHHHHHHHhcCCC-ccccccccccHHHHHHHcC
Confidence            459999988877665554443245568899999999999999 888     777777755 5889999999999999999


Q ss_pred             CCchHHHHHH
Q 043183          117 HKDMPICMVS  126 (564)
Q Consensus       117 ~~~iv~~Ll~  126 (564)
                      +.+++..++.
T Consensus       100 ~~q~i~~vlr  109 (560)
T KOG0522|consen  100 NEQIITEVLR  109 (560)
T ss_pred             CHHHHHHHHH
Confidence            9988887765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.89  E-value=3.5e-05  Score=78.51  Aligned_cols=76  Identities=17%  Similarity=0.171  Sum_probs=67.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch
Q 043183            8 QTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG   87 (564)
Q Consensus         8 ~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G   87 (564)
                      -||-.++.|+.+..-.||..+.+. +......|.||||+|++.|+..-+++|+-+  ++|+...|.+|.||+.+|- ..|
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~-N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY--GAD~~a~d~~GmtP~~~AR-~~g  211 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQA-NFFHPEKGNTPLHVAAKAGQILQAELLAVY--GADPGAQDSSGMTPVDYAR-QGG  211 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHccccc-CCCCcccCCchhHHHHhccchhhhhHHhhc--cCCCCCCCCCCCcHHHHHH-hcC
Confidence            489999999999999999887763 343457899999999999999999999988  7889999999999999998 888

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.88  E-value=1e-05  Score=81.92  Aligned_cols=80  Identities=23%  Similarity=0.118  Sum_probs=70.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      ++-.++..|++.|++..++.+.-.+.+.  ...|.+.+|+||+||..|+.+++++|++.. ..+.+.+|..|+|||.-|.
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~--~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~-kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDL--ETKDYDDRTALHVAAAEGHVEVVKFLLNAC-KVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccc--cccccccchhheeecccCceeHHHHHHHHH-cCCCChhhccCCCcchHhH
Confidence            4556899999999999999998887664  445888999999999999999999999984 6788999999999999998


Q ss_pred             Hhch
Q 043183           84 HLEG   87 (564)
Q Consensus        84 ~~~G   87 (564)
                       ..+
T Consensus       582 -~F~  584 (622)
T KOG0506|consen  582 -HFK  584 (622)
T ss_pred             -hcC
Confidence             666

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.86  E-value=3.1e-05  Score=86.08  Aligned_cols=119  Identities=13%  Similarity=0.139  Sum_probs=92.9

Q ss_pred             cccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch----HHHHhcCcccccccCCCCCcHH
Q 043183           34 IAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG----RVMMKHNRSIAMVRDHNQTLPI  109 (564)
Q Consensus        34 ~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G----~~Ll~~~~~~~~~~d~~G~TpL  109 (564)
                      ...+..|.|.||+++..++.-.++.+++. .+......|.+|.-.+|++| ..|    .+++..+...++++|..|+|||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~-~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEW-AGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcc-cccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCccc
Confidence            44567899999999999999999999986 23334456788888899988 777    5666666677899999999999


Q ss_pred             HHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccc---cccCCCCCcHHHHHHhCCCC
Q 043183          110 DVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLA---TLRAGDCETPLHALARKNLT  166 (564)
Q Consensus       110 h~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~---~~~d~~G~TpLh~Aa~~g~~  166 (564)
                      |+|+..|+..++..|++            +++.+...   ...+..|.|+-..|..+|+.
T Consensus       646 ~wAa~~G~e~l~a~l~~------------lga~~~~~tdps~~~p~g~ta~~la~s~g~~  693 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIE------------LGADPGAVTDPSPETPGGKTAADLARANGHK  693 (975)
T ss_pred             chHhhcCHHHHHHHHHH------------hccccccccCCCCCCCCCCchhhhhhccccc
Confidence            99999999999999976            23333221   33445799999999988864

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.83  E-value=1.3e-05  Score=86.24  Aligned_cols=90  Identities=22%  Similarity=0.292  Sum_probs=50.3

Q ss_pred             HHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCC-CCCcHHHHHHHhch-----HHHHhcC
Q 043183           21 AKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNK-HGGTALSMLLHLEG-----RVMMKHN   94 (564)
Q Consensus        21 v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~-~G~TpLH~Aa~~~G-----~~Ll~~~   94 (564)
                      ++-++++....+.+..|..|+|+||+|+..|..+++++||++  +.++..+|. .|+||||-|. ..|     -.|+.++
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh--Gidv~vqD~ESG~taLHRai-yyG~idca~lLL~~g  109 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH--GIDVFVQDEESGYTALHRAI-YYGNIDCASLLLSKG  109 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhc--CceeeeccccccchHhhHhh-hhchHHHHHHHHhcC
Confidence            444444432222234466666666666666666666666666  455555554 4666666666 555     3444444


Q ss_pred             cccccccCCCCCcHHHHHHH
Q 043183           95 RSIAMVRDHNQTLPIDVAAS  114 (564)
Q Consensus        95 ~~~~~~~d~~G~TpLh~Aa~  114 (564)
                      .. ..+.|++|.+||..-++
T Consensus       110 ~S-L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  110 RS-LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             Cc-eEEecccCCCHHHHHhh
Confidence            32 35566666666665554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.67  E-value=4.4e-05  Score=84.97  Aligned_cols=140  Identities=11%  Similarity=-0.098  Sum_probs=103.6

Q ss_pred             ccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccc
Q 043183           98 AMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRG  177 (564)
Q Consensus        98 ~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~  177 (564)
                      .......|+|-+|+++..++.-.++.++              ++........|.+|.-.+|++|..|..           
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~--------------e~~~~~~~eld~d~qgV~hfca~lg~e-----------  621 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVI--------------EWAGSGDLELDRDGQGVIHFCAALGYE-----------  621 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHh--------------cccccCchhhcccCCChhhHhhhcCCc-----------
Confidence            4455667999999999998877777764              332334456788888899998877754           


Q ss_pred             hHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCccccccccc
Q 043183          178 IFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFE  257 (564)
Q Consensus       178 ~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~  257 (564)
                                                .--.+...++..++.+|..|+||||+|+..|+..++..|++.+++....+    
T Consensus       622 --------------------------wA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~t----  671 (975)
T KOG0520|consen  622 --------------------------WAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVT----  671 (975)
T ss_pred             --------------------------eeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhcccccccc----
Confidence                                      00012445677888999999999999999999999999997776652211    


Q ss_pred             chHHHh---hcCCchHHHHHhcCCCCccccccchHHHhhHH
Q 043183          258 SSGAHL---QTRNNILHLAAMLPPQDRLNIVSGAALQMQRE  295 (564)
Q Consensus       258 ~i~n~~---~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~e  295 (564)
                         +.-   -.|.|+-.+|...|+..+-.+|+.++|-.+.+
T Consensus       672 ---dps~~~p~g~ta~~la~s~g~~gia~~lse~~L~~~~~  709 (975)
T KOG0520|consen  672 ---DPSPETPGGKTAADLARANGHKGIAGYLSEKALSAHLS  709 (975)
T ss_pred             ---CCCCCCCCCCchhhhhhcccccchHHHHhhhHHHHHHh
Confidence               000   56999999999999999888887666655544

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.58  E-value=0.02  Score=63.03  Aligned_cols=109  Identities=19%  Similarity=0.206  Sum_probs=81.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCcc--ccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHh
Q 043183            8 QTYRAALNGDWAVAKSIYDVYEG--EIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHL   85 (564)
Q Consensus         8 ~Lh~Aa~~G~~~~v~~Ll~~~~~--~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~   85 (564)
                      ....|+..||.-.|+..++....  ...+-.|.-|.++||+|+.+.+.|++++|++.  +.  ..     ..+|-+|+ .
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~--~~--~~-----gdALL~aI-~   97 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT--SS--EE-----GDALLLAI-A   97 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcC--cc--cc-----chHHHHHH-H
Confidence            45689999999999999998543  22234688899999999999999999999988  21  11     35777888 7


Q ss_pred             ch-----HHHHhcCccc---------ccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           86 EG-----RVMMKHNRSI---------AMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        86 ~G-----~~Ll~~~~~~---------~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      .|     +.++.+....         ....-..+.|||.+||..+|.|++++|++
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~  152 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLT  152 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHH
Confidence            77     5555542111         11222347899999999999999999965

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.57  E-value=0.00015  Score=75.43  Aligned_cols=76  Identities=25%  Similarity=0.209  Sum_probs=34.3

Q ss_pred             HHHHHHcCCHHHHHHHHHhCcc-ccccc-cCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhc
Q 043183            9 TYRAALNGDWAVAKSIYDVYEG-EIGIA-IAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLE   86 (564)
Q Consensus         9 Lh~Aa~~G~~~~v~~Ll~~~~~-~l~~~-~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~   86 (564)
                      |..|+...|+..+..||.++.. .++.. -+.+|.|+||+||+.|+..+.++|+=+  +.|+..+|..|+|+|.||- ..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy--g~dv~~rda~g~t~l~yar-~a  704 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY--GVDVMARDAHGRTALFYAR-QA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh--CccceecccCCchhhhhHh-hc
Confidence            3444444455555555544322 11111 123345555555555555555555543  3344444555555555554 44


Q ss_pred             h
Q 043183           87 G   87 (564)
Q Consensus        87 G   87 (564)
                      |
T Consensus       705 ~  705 (749)
T KOG0705|consen  705 G  705 (749)
T ss_pred             c
Confidence            4

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.40  E-value=0.00029  Score=73.28  Aligned_cols=62  Identities=21%  Similarity=0.086  Sum_probs=54.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcc
Q 043183            3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAE   66 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~   66 (564)
                      -+|+|+||+||+.|++...+.|+=.+.+.  ...|..|+|+|.+|-++|..+++..|++++.+.
T Consensus       659 ~~grt~LHLa~~~gnVvl~QLLiWyg~dv--~~rda~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  659 GDGRTALHLAARKGNVVLAQLLIWYGVDV--MARDAHGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             CCCcchhhhhhhhcchhHHHHHHHhCccc--eecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            36899999999999999999999776653  446999999999999999999999999997553

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.19  E-value=0.0011  Score=65.79  Aligned_cols=55  Identities=15%  Similarity=0.093  Sum_probs=45.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcC
Q 043183            7 LQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIM   63 (564)
Q Consensus         7 t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~   63 (564)
                      --|..||+.|+++.|+.|++.+.+ + +..|.-..+||.+|+..||.++|++|++.+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvn-V-N~vD~fD~spL~lAsLcGHe~vvklLLenG   92 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVN-V-NAVDRFDSSPLYLASLCGHEDVVKLLLENG   92 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCC-c-chhhcccccHHHHHHHcCcHHHHHHHHHcC
Confidence            357889999999999999987655 3 456788889999999999999999999884

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.15  E-value=0.00046  Score=77.41  Aligned_cols=84  Identities=18%  Similarity=0.234  Sum_probs=71.5

Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch----HHHHhcCcccccccCCCCCcHHHHHH
Q 043183           38 KRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG----RVMMKHNRSIAMVRDHNQTLPIDVAA  113 (564)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G----~~Ll~~~~~~~~~~d~~G~TpLh~Aa  113 (564)
                      ..|.|+||.|+..|..-+++.|++.  +++++..|..|+||||.+. ..|    .+++-+.....+..|.+|.+||++|.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~--ga~vn~~d~~g~~plh~~~-~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQN--GADVNALDSKGRTPLHHAT-ASGHTSIACLLLKRGADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhc--CCcchhhhccCCCcchhhh-hhcccchhhhhccccccccccCccCcchhhHHh
Confidence            4578999999999999999999999  5679999999999999999 888    44444455667888999999999998


Q ss_pred             HcCCCchHHHH
Q 043183          114 SLGHKDMPICM  124 (564)
Q Consensus       114 ~~g~~~iv~~L  124 (564)
                      ...+.+++-++
T Consensus       731 ~~~~~d~~~l~  741 (785)
T KOG0521|consen  731 EAANADIVLLL  741 (785)
T ss_pred             hhccccHHHHH
Confidence            88777777665

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.12  E-value=0.0012  Score=72.43  Aligned_cols=79  Identities=9%  Similarity=0.168  Sum_probs=57.9

Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCc--ccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHH
Q 043183           38 KRGDTALRIAAAGKYIEFLKELVKIMEA--EDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPID  110 (564)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~--~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh  110 (564)
                      ..++--.-.|++.|+.-.|+..++....  -+++..|.-|.++||.|. .+.     +.|++..-..        ..+|.
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai-~nenle~~eLLl~~~~~~--------gdALL   93 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAI-DNENLELQELLLDTSSEE--------GDALL   93 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccc-ccccHHHHHHHhcCcccc--------chHHH
Confidence            3455567889999999999999988644  347888888999999988 655     4444443211        34788


Q ss_pred             HHHHcCCCchHHHHH
Q 043183          111 VAASLGHKDMPICMV  125 (564)
Q Consensus       111 ~Aa~~g~~~iv~~Ll  125 (564)
                      +|+..|..++|+.++
T Consensus        94 ~aI~~~~v~~VE~ll  108 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLL  108 (822)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888888888876

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=96.93  E-value=0.00069  Score=76.04  Aligned_cols=76  Identities=18%  Similarity=0.115  Sum_probs=69.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      .|.|+||.|+..|....++.|++.+.+ + +..|..|+||||.+...|+...+..|++.  +++.+..|.+|.+||++|.
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~-v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~--~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGAD-V-NALDSKGRTPLHHATASGHTSIACLLLKR--GADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCc-c-hhhhccCCCcchhhhhhcccchhhhhccc--cccccccCccCcchhhHHh
Confidence            579999999999999999999999877 3 55689999999999999999999999996  6778889999999999998

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=96.83  E-value=0.00059  Score=61.61  Aligned_cols=61  Identities=13%  Similarity=-0.005  Sum_probs=52.9

Q ss_pred             hHhhhhcCCchHHHHHHHcCCHHHHHHHHHhC-CCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          215 EISRLISKPGALIFDAAKQGNVGFLLILTREY-PNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       215 ~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~-~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      ++|.+|..|+|||+.|+..|+.+.+.+|++++ +.+-...          ..|++++.+|-+.|..+.+..|
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d----------~ssldaaqlaek~g~~~fvh~l   65 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTD----------ESSLDAAQLAEKGGAQAFVHSL   65 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccc----------cccchHHHHHHhcChHHHHHHH
Confidence            67889999999999999999999999999999 4442222          8999999999999998887765

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=96.32  E-value=0.011  Score=53.62  Aligned_cols=49  Identities=20%  Similarity=0.001  Sum_probs=25.1

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch
Q 043183           37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG   87 (564)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G   87 (564)
                      |..|+|||++|+..|+.+.|.+|+..+ -+++...|..|.+++.+|- +.|
T Consensus         9 D~fgWTalmcaa~eg~~eavsyllgrg-~a~vgv~d~ssldaaqlae-k~g   57 (223)
T KOG2384|consen    9 DAFGWTALMCAAMEGSNEAVSYLLGRG-VAFVGVTDESSLDAAQLAE-KGG   57 (223)
T ss_pred             hhhcchHHHHHhhhcchhHHHHHhccC-cccccccccccchHHHHHH-hcC
Confidence            445555555555555555555555442 1344455555555555555 444

>smart00248 ANK ankyrin repeats

Probab=96.26  E-value=0.0062  Score=36.62  Aligned_cols=28  Identities=18%  Similarity=0.246  Sum_probs=25.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183          222 KPGALIFDAAKQGNVGFLLILTREYPNL  249 (564)
Q Consensus       222 ~G~TpLh~Aa~~g~~~iv~~LL~~~~~~  249 (564)
                      .|.||+|+|+..|+.++++.|++.++++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3689999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.44  E-value=0.024  Score=33.84  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=16.6

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHc
Q 043183           40 GDTALRIAAAGKYIEFLKELVKI   62 (564)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~   62 (564)
                      |.||||+|+..++.++++.|++.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~   24 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDK   24 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Confidence            56777777777777777777766

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.73  E-value=0.055  Score=54.14  Aligned_cols=50  Identities=10%  Similarity=0.035  Sum_probs=41.9

Q ss_pred             HHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCccccc
Q 043183          199 KLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISY  253 (564)
Q Consensus       199 ~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~  253 (564)
                      +.|++|.+     -+.++|+.|+-...||.+|+..||.++|++||++|+-+...+
T Consensus        50 d~v~~LVe-----tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdt   99 (516)
T KOG0511|consen   50 DRVRYLVE-----TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDT   99 (516)
T ss_pred             HHHHHHHH-----hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccc
Confidence            56666654     445788889988999999999999999999999999886555

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=92.77  E-value=0.11  Score=53.96  Aligned_cols=45  Identities=16%  Similarity=0.016  Sum_probs=38.8

Q ss_pred             hcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHH
Q 043183          220 ISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAA  274 (564)
Q Consensus       220 d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa  274 (564)
                      |..-.|+||+|+..|..++|.+||+.+.|....+          ..|.||..+++
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd----------~~Grtpy~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKD----------GAGRTPYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhcCCchhcc----------cCCCCcccccc
Confidence            3345799999999999999999999998875544          88999999987

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=92.19  E-value=0.097  Score=54.33  Aligned_cols=59  Identities=12%  Similarity=0.149  Sum_probs=38.3

Q ss_pred             HHHHHHHHHcCCccc----ccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHH
Q 043183           53 IEFLKELVKIMEAED----LAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAA  113 (564)
Q Consensus        53 ~~iv~~Ll~~~~~~~----l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa  113 (564)
                      .+.+++|.+.....+    ....+..-.|+||+|+ ..|     .++++.+ ..+...|..|+||..+++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa-~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAA-AQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHH-hcchHHHHHHHHHhc-CCchhcccCCCCcccccc
Confidence            566777777643222    2333444567888888 777     5566666 556777888888887776

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=88.14  E-value=2  Score=40.54  Aligned_cols=50  Identities=12%  Similarity=0.103  Sum_probs=37.8

Q ss_pred             HHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 043183          198 LKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPN  248 (564)
Q Consensus       198 ~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~  248 (564)
                      ..++++.+.+.+- +.....++-+.|.|-|.-|.+.++.+++..||++|+.
T Consensus       230 ~kvL~~Fi~~Glv-~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  230 YKVLEYFINRGLV-DVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHHHHHHhcccc-ccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            4667776665442 2223445667899999999999999999999999874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	564
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 47/234 (20%), Positives = 77/234 (32%), Gaps = 66/234 (28%)

Query: 371 PFFLEKFSENFSFKIFAISDAISLVSSSASVVNFLSILTPRYAEEDFLRLLPRKLLLGLA 430
             F + F +NF  K   + D    + S   + +   I+  + A    LRL          
Sbjct: 23  SVFEDAFVDNFDCK--DVQDMPKSILSKEEIDH---IIMSKDAVSGTLRLF--------- 68

Query: 431 TLFISVAAMMV-VFSTTFFILLAQETLWIAILVSVIA------STPVILFIWQHFRLF-- 481
              +S    MV  F      +L     +   L+S I       S    ++I Q  RL+  
Sbjct: 69  WTLLSKQEEMVQKFVEE---VLRINYKF---LMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 482 ------YDV--------LRSTLF--RKE-----------GETS---ERQNNTKI-----F 506
                 Y+V        LR  L   R             G+T    +   + K+     F
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 507 NAHW-EIQCTCSTNAVIKNLRKSFFPEEQTWSSSSGDGSFLNSSRPDKMKDFGR 559
              W  ++   S   V++ L+K  +  +  W+S S D S     R   ++   R
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-DHSSNIKLRIHSIQAELR 235

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 49/326 (15%), Positives = 96/326 (29%), Gaps = 106/326 (32%)

Query: 134 VALQLCRDRPKLAT-------LRAGDCETP---------LHALARKNLTSSNFINQNQRG 177
           VAL +C               L   +C +P         L      N TS +  + N + 
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK- 224

Query: 178 IFRRCFNLGAEDVEVQRLQALKLVERLCGKVAL--LSDSEISRLISKPGALIFD-AAKQG 234
                  + +   E++RL   K  E       L  L + + ++  +      F+ + K  
Sbjct: 225 -----LRIHSIQAELRRLLKSKPYEN-----CLLVLLNVQNAKAWNA-----FNLSCK-- 267

Query: 235 NVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQ- 293
               +L+ TR            +   A   T  ++ H +  L P +  +++    L  + 
Sbjct: 268 ----ILLTTRFKQV-------TDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRP 315

Query: 294 ----REFCEKVVQRGFAEAKNREGLTPR--ALFTKEHKDLRETGEKWMKDTATSCMFVAT 347
               RE                    PR  ++  +  +D   T + W      +C  + T
Sbjct: 316 QDLPREVL---------------TTNPRRLSIIAESIRDGLATWDNWKH---VNCDKLTT 357

Query: 348 LIATVVFVAAFTVPRSNREDTGFPFFLEKFSENFSFKIFAI--SDA-ISLVSSSASVVNF 404
           +I     +     P   R+                F   ++    A I        +   
Sbjct: 358 IIE--SSLNVLE-PAEYRK---------------MFDRLSVFPPSAHIP-----TIL--- 391

Query: 405 LSIL---TPRYAEEDFLRLLPRKLLL 427
           LS++     +      +  L +  L+
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLV 417

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 63/441 (14%), Positives = 119/441 (26%), Gaps = 175/441 (39%)

Query: 152 DCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQ-ALKLVERLCGKVAL 210
           D ET  H    K++ S          +F   F    ++ + + +Q   K +         
Sbjct: 8   DFETGEHQYQYKDILS----------VFEDAF---VDNFDCKDVQDMPKSI--------- 45

Query: 211 LSDSEISRLISKPGA-----LIFDA--AKQGNV--GFL-LILTREYPNL--HISYRRFES 258
           LS  EI  +I    A      +F    +KQ  +   F+  +L   Y  L   I   + + 
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 259 SG---AHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLT 315
           S     +++ R+ + +   +                + R      +++   E +  + + 
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAK-----------YNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 316 PRALFTKEHKDLRETGEKWMKDTATSCMFVATLIATVVFVAAFTVPRSNREDTGFPFFLE 375
              +           G   +  +  +      +   V          S            
Sbjct: 155 ---I----D------G---VLGSGKTW-----VALDVC--------LS-----------Y 174

Query: 376 KFSENFSFKIFAISDAISLVSSSASVV----NFLSILTPRYAE---------------ED 416
           K      FKIF ++  +   +S  +V+      L  + P +                 + 
Sbjct: 175 KVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 417 FLRLL------PRKLL---------------LG----LATLFISVAAMMVVFSTTFFI-- 449
            LR L         LL               L     L T F  V   +   +TT     
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 450 -----LLAQETL-----WIAI---------------LVSVI-ASTPVILFIWQHFR---- 479
                L   E       ++                  +S+I  S    L  W +++    
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 480 --------LFYDVLRSTLFRK 492
                      +VL    +RK
Sbjct: 353 DKLTTIIESSLNVLEPAEYRK 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.2 bits (104), Expect = 9e-05
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 9   TYRAALNGDWAVAKSI-YDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAED 67
            + AA+ G  +   ++   +   EI   I      A R+AA   ++  L  L ++   E 
Sbjct: 96  CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI 155

Query: 68  LAKPNKHGGTAL---SMLLHLEGRVMMKH------NRSIAMVRDHNQTLPIDVAASLGHK 118
           +A        A    +   HL    ++          + AM++  N       A   GH 
Sbjct: 156 MAMIQAENYHAFRLAAENGHLH---VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 212

Query: 119 DM 120
           ++
Sbjct: 213 NV 214

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 28/163 (17%), Positives = 46/163 (28%), Gaps = 14/163 (8%)

Query: 10  YRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLA 69
             AA NG   V   + ++   EI   I      A R+AA   ++  L  L ++   E  A
Sbjct: 133 RLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 192

Query: 70  KPNKHGGTALSMLL----HLEG-RVMMKHNRSIAMVRDH-NQTLPIDVAASLGHK--DMP 121
                   A         H      ++     +A    H  +     V   +      + 
Sbjct: 193 MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK 252

Query: 122 ICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKN 164
               +  +  PD    L      +           L  L R+N
Sbjct: 253 EMHDAFKLSNPDGVFDL------VTKSECLQGFYMLRNLIRRN 289

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	564
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.98
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.98
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.95
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.93
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.92
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.92
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.92
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.91
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.91
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.91
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.9
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.9
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.9
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.9
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.9
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.89
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.89
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.89
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.88
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.88
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.85
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.84
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.83
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.83
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.82
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.82
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.82
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.82
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.81
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.81
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.79
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.78
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.78
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.78
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.78
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.77
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.77
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.77
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.77
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.75
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.74
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.73
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.72
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.71
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.71
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.69
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.68
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.68
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.67
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.66
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.6
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.6
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.52
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.49

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.8e-36  Score=292.37  Aligned_cols=218  Identities=17%  Similarity=0.139  Sum_probs=164.5

Q ss_pred             CCCCCcHHHHHHHcC-------------CHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccc
Q 043183            2 TRSRRLQTYRAALNG-------------DWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDL   68 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G-------------~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l   68 (564)
                      |..|+||||.|+..|             +.++++.|++.+++.. ...|..|.||||+|+..|+.++|++|++.  +.++
T Consensus         7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~   83 (253)
T 1yyh_A            7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLEA--SADA   83 (253)
T ss_dssp             ----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCT
T ss_pred             CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcc-cccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCC
Confidence            567999999999988             8999999999987643 44688999999999999999999999998  6788


Q ss_pred             cCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCC
Q 043183           69 AKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRP  143 (564)
Q Consensus        69 ~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~  143 (564)
                      +.+|..|.||||+|+ ..|     +.|++.++..++.+|..|.||||+|+..|+.+++++|++              .+.
T Consensus        84 ~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~  148 (253)
T 1yyh_A           84 NIQDNMGRTPLHAAV-SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN--------------SHA  148 (253)
T ss_dssp             TCCCTTSCCHHHHHH-HHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH--------------TTC
T ss_pred             CCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH--------------cCC
Confidence            899999999999999 888     888888876778899999999999999999999999863              444


Q ss_pred             ccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCC
Q 043183          144 KLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKP  223 (564)
Q Consensus       144 ~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G  223 (564)
                      + ++.+|.+|+||||+|+..|+.                                ++++.|++     .+.+++.+|..|
T Consensus       149 ~-~~~~d~~g~t~L~~A~~~~~~--------------------------------~~v~~Ll~-----~ga~~~~~~~~g  190 (253)
T 1yyh_A          149 D-VNAVDDLGKSALHWAAAVNNV--------------------------------DAAVVLLK-----NGANKDMQNNRE  190 (253)
T ss_dssp             C-TTCBCTTSCBHHHHHHHHTCH--------------------------------HHHHHHHH-----TTCCTTCCCTTS
T ss_pred             C-CCCcCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHH-----cCCCCCCcCCCC
Confidence            4 478899999999999999964                                56666655     356778889999


Q ss_pred             chHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          224 GALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       224 ~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      .||||+|+..|+.+++++|+++|+++....          ..|+||||+|++.|+.+++++|
T Consensus       191 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d----------~~g~tpl~~A~~~g~~~i~~~l  242 (253)
T 1yyh_A          191 ETPLFLAAREGSYETAKVLLDHFANRDITD----------HMDRLPRDIAQERMHHDIVRLL  242 (253)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------TTCCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCccccc----------cCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999874433          8999999999999999988876

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=7.5e-35  Score=298.25  Aligned_cols=228  Identities=15%  Similarity=0.110  Sum_probs=186.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCc------------------
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEA------------------   65 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~------------------   65 (564)
                      +|.||||.||+.|+.++|+.||+.+.+ ++...+..|.||||+||..|+.++|++|++++..                  
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            478999999999999999999999876 3344345699999999999999999999998532                  


Q ss_pred             -------------ccccCCCCCCCcHHHHHHHhch-----HHHHhcCccc---------ccccCCCCCcHHHHHHHcCCC
Q 043183           66 -------------EDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSI---------AMVRDHNQTLPIDVAASLGHK  118 (564)
Q Consensus        66 -------------~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~---------~~~~d~~G~TpLh~Aa~~g~~  118 (564)
                                   .+++.+|..|.||||+|+ ..|     +.+++.+.+.         ....+..|.||||+|+..|+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~-~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~  181 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAA-VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  181 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHH-HTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHH-HcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence                         246678889999999999 888     6777765432         234566799999999999999


Q ss_pred             chHHHHHHc------------------------ccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCccccccc
Q 043183          119 DMPICMVSM------------------------NMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQN  174 (564)
Q Consensus       119 ~iv~~Ll~~------------------------~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~  174 (564)
                      +++++|++.                        ..+..++++.|++.+.+. +.+|.+|+||||+|+..|+.        
T Consensus       182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~--------  252 (337)
T 4g8k_A          182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHL--------  252 (337)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCH--------
T ss_pred             HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhh--------
Confidence            999999950                        111234677788877665 78899999999999999864        


Q ss_pred             ccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccc
Q 043183          175 QRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYR  254 (564)
Q Consensus       175 ~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~  254 (564)
                                              ++++.|    +...+.+++.+|.+|+||||+|++.|+.++|++||++|+++     
T Consensus       253 ------------------------~~v~~L----l~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~-----  299 (337)
T 4g8k_A          253 ------------------------GLVQRL----LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST-----  299 (337)
T ss_dssp             ------------------------HHHHHH----HTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS-----
T ss_pred             ------------------------HHHHHH----HHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-----
Confidence                                    455554    44567788999999999999999999999999999999985     


Q ss_pred             cccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          255 RFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       255 r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                                ++.||||+|++.|+.+++++|
T Consensus       300 ----------n~~~~L~~A~~~~~~~iv~~L  320 (337)
T 4g8k_A          300 ----------DCGDLVMTARRNYDHSLVKVL  320 (337)
T ss_dssp             ----------TTCCHHHHHHHTTCHHHHHHH
T ss_pred             ----------CCCCHHHHHHHcCCHHHHHHH
Confidence                      567899999999999988877

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-34  Score=284.73  Aligned_cols=235  Identities=12%  Similarity=0.064  Sum_probs=200.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183            3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML   82 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A   82 (564)
                      .+|.||||.|++.|+.++++.|++.+++ ++...+..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A   79 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHH
Confidence            4688999999999999999999999876 3344478899999999999999999999998  667888999999999999


Q ss_pred             HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH-----------------------------cc
Q 043183           83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS-----------------------------MN  128 (564)
Q Consensus        83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-----------------------------~~  128 (564)
                      + ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++                             +.
T Consensus        80 ~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  157 (285)
T 1wdy_A           80 A-IAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE  157 (285)
T ss_dssp             H-HHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred             H-HcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence            9 998     888888755 57789999999999999999999999987                             23


Q ss_pred             cCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhh
Q 043183          129 MLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKV  208 (564)
Q Consensus       129 ~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~  208 (564)
                      .++.++++.|++..+...+..|..|+||||+|+..++.                            ....++++.|++  
T Consensus       158 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~----------------------------~~~~~i~~~Ll~--  207 (285)
T 1wdy_A          158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD----------------------------SDVEAITHLLLD--  207 (285)
T ss_dssp             HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT----------------------------TTHHHHHHHHHH--
T ss_pred             cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc----------------------------chHHHHHHHHHH--
Confidence            46788999999986666688999999999999998864                            011256666554  


Q ss_pred             ccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHH-hCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          209 ALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTR-EYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       209 l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~-~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                         .+.+++.+|..|.||||+|+..|+.+++++|++ .+.++....          .+|+||||+|++.++.+++++|
T Consensus       208 ---~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~----------~~g~t~l~~A~~~~~~~i~~~L  272 (285)
T 1wdy_A          208 ---HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD----------SDGKTALLLAVELKLKKIAELL  272 (285)
T ss_dssp             ---TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCC----------TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ---cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccC----------CCCCcHHHHHHHcCcHHHHHHH
Confidence               455678889999999999999999999999999 677764333          8999999999999999888876

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4e-34  Score=303.36  Aligned_cols=275  Identities=17%  Similarity=0.155  Sum_probs=208.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|.||||.|+..|+.++++.|++.+.+.  ...+..|.||||+|+..|+.++|++|++.  +.+.+..+..|.||||+
T Consensus        77 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~  152 (437)
T 1n11_A           77 AKDDQTPLHCAARIGHTNMVKLLLENNANP--NLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHV  152 (437)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhCCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHH
Confidence            467899999999999999999999987653  34578899999999999999999999988  45667788899999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH-------------------cccCCHHHHHH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS-------------------MNMLLPDVALQ  137 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-------------------~~~~~~~i~~~  137 (564)
                      |+ ..|     +.|++.+.+ ++..|..|.||||+|+..|+.+++++|++                   +..++.++++.
T Consensus       153 A~-~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~  230 (437)
T 1n11_A          153 AA-KYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS  230 (437)
T ss_dssp             HH-HTTCHHHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HH-HcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            99 888     778887654 57778889999999999999999999987                   45677899999


Q ss_pred             HHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhh------------cCCcHHHHHHhHHHHHHHHH
Q 043183          138 LCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNL------------GAEDVEVQRLQALKLVERLC  205 (564)
Q Consensus       138 Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~------------~~~h~~v~~~~~~~lv~~l~  205 (564)
                      |++.+.+. +..|..|.||||+|+..|+.+          .++.+++.            +..|.++.. ...++++.|+
T Consensus       231 Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~----------~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll  298 (437)
T 1n11_A          231 LLQYGGSA-NAESVQGVTPLHLAAQEGHAE----------MVALLLSKQANGNLGNKSGLTPLHLVAQE-GHVPVADVLI  298 (437)
T ss_dssp             HHHTTCCT-TCCCTTCCCHHHHHHHTTCHH----------HHHHHHTTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHH
T ss_pred             HHHcCCCC-CCCCCCCCCHHHHHHHCCCHH----------HHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHH
Confidence            99887765 778889999999999988652          22222211            112322221 2235555555


Q ss_pred             HhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          206 GKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       206 ~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      +.     +.+++.+|..|+||||+|+..|+.+++++|+++++++....          ..|+||||+|++.|+.+++++|
T Consensus       299 ~~-----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~----------~~g~t~L~~A~~~g~~~iv~~L  363 (437)
T 1n11_A          299 KH-----GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT----------KLGYSPLHQAAQQGHTDIVTLL  363 (437)
T ss_dssp             HH-----TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCC----------TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hC-----CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCC----------CCCCCHHHHHHHCChHHHHHHH
Confidence            43     34566677788888888888888888888888887764333          7788888888888887777665


Q ss_pred             cchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHHH
Q 043183          286 SGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTKE  323 (564)
Q Consensus       286 ~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~~  323 (564)
                                 ++   .....+.+|.+|+||.++..+.
T Consensus       364 -----------l~---~ga~~~~~~~~g~t~l~~A~~~  387 (437)
T 1n11_A          364 -----------LK---NGASPNEVSSDGTTPLAIAKRL  387 (437)
T ss_dssp             -----------HH---TTCCSCCCCSSSCCHHHHHHHT
T ss_pred             -----------HH---CcCCCCCCCCCCCCHHHHHHHc
Confidence                       12   1223456788999999986553

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.2e-34  Score=292.19  Aligned_cols=262  Identities=15%  Similarity=0.091  Sum_probs=210.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      .+.|+||.||+.|+.+.++.++...+..+ ...|..|.||||+|+..|+.++|++|++.  +.+++.+|..|.||||+|+
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   99 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNAC   99 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTC-CCSSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHHHHH
Confidence            46799999999999999999998755544 44688999999999999999999999998  6788899999999999999


Q ss_pred             Hhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHc-------------------------------
Q 043183           84 HLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSM-------------------------------  127 (564)
Q Consensus        84 ~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~-------------------------------  127 (564)
                       ..|     +.|++.+.+ ++..|..|.||||+|+..|+.+++++|++.                               
T Consensus       100 -~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~  177 (351)
T 3utm_A          100 -SYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF  177 (351)
T ss_dssp             -HTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred             -HCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence             999     888888755 577899999999999999999999999872                               


Q ss_pred             ---------ccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHH
Q 043183          128 ---------NMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQAL  198 (564)
Q Consensus       128 ---------~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~  198 (564)
                               ..+..+.+..++...... ...+..|.||||+|+..++.                             ...
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~-----------------------------~~~  227 (351)
T 3utm_A          178 KGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHP-----------------------------KRK  227 (351)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCST-----------------------------THH
T ss_pred             cccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCc-----------------------------cHH
Confidence                     122334444444444322 45677899999999998643                             123


Q ss_pred             HHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCC
Q 043183          199 KLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPP  278 (564)
Q Consensus       199 ~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~  278 (564)
                      ++++.|++     .+.+++.+|..|+||||+|+..|+.+++++|+++++++....          ..|+||||+|+..|+
T Consensus       228 ~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d----------~~g~t~L~~A~~~~~  292 (351)
T 3utm_A          228 QVAELLLR-----KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD----------SLGQTALHRAALAGH  292 (351)
T ss_dssp             HHHHHHHH-----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------TTSCCHHHHHHHHTC
T ss_pred             HHHHHHHH-----cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC----------CCCCCHHHHHHHcCc
Confidence            56666654     456778889999999999999999999999999999884433          899999999999999


Q ss_pred             CCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHHHhhhhHH
Q 043183          279 QDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTKEHKDLRE  329 (564)
Q Consensus       279 ~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~~~~~l~~  329 (564)
                      .+++++|           ++   .......+|.+|+||.++..+...++..
T Consensus       293 ~~~v~~L-----------l~---~gad~~~~~~~g~tal~~a~~~~~~~l~  329 (351)
T 3utm_A          293 LQTCRLL-----------LS---YGSDPSIISLQGFTAAQMGNEAVQQILS  329 (351)
T ss_dssp             HHHHHHH-----------HH---TTCCTTCCCTTSCCHHHHSCHHHHHHHH
T ss_pred             HHHHHHH-----------HH---cCCCCCCcCCCCCChhhhhhHHHHHHHH
Confidence            8888876           11   2234566888999999987665544443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3e-34  Score=278.50  Aligned_cols=218  Identities=13%  Similarity=0.130  Sum_probs=185.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHh---CccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDV---YEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTA   78 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~---~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~Tp   78 (564)
                      |.+|+||||.||+.|+.++++.|++.   .+..+ ...|..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQTA   82 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCH
Confidence            67899999999999999999999983   33333 44688999999999999999999999998  56788899999999


Q ss_pred             HHHHHHhch-----HHHHhcCcc---cccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccC
Q 043183           79 LSMLLHLEG-----RVMMKHNRS---IAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRA  150 (564)
Q Consensus        79 LH~Aa~~~G-----~~Ll~~~~~---~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d  150 (564)
                      ||+|+ ..|     +.|++.++.   ..+..|..|.||||+|+..|+.+++++|++              .+.+. +..|
T Consensus        83 l~~A~-~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------~g~~~-~~~~  146 (241)
T 1k1a_A           83 AHLAC-EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE--------------RGADI-DAVD  146 (241)
T ss_dssp             HHHHH-HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH--------------TTCCT-TCCC
T ss_pred             HHHHH-HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH--------------cCCCc-cccc
Confidence            99999 998     778887652   467788999999999999999999998853              55554 4555


Q ss_pred             -CCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHH
Q 043183          151 -GDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFD  229 (564)
Q Consensus       151 -~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~  229 (564)
                       ..|.||||+|+..|+.                                ++++.|++     .+.+++.+|..|+||||+
T Consensus       147 ~~~g~t~L~~A~~~~~~--------------------------------~~v~~Ll~-----~g~~~~~~~~~g~t~L~~  189 (241)
T 1k1a_A          147 IKSGRSPLIHAVENNSL--------------------------------SMVQLLLQ-----HGANVNAQMYSGSSALHS  189 (241)
T ss_dssp             TTTCCCHHHHHHHTTCH--------------------------------HHHHHHHH-----TTCCTTCBCTTSCBHHHH
T ss_pred             ccCCCcHHHHHHHcCCH--------------------------------HHHHHHHH-----cCCCCCCcCCCCCCHHHH
Confidence             8899999999999965                                66776655     356788889999999999


Q ss_pred             HHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          230 AAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       230 Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      |+..|+.+++++|+++|+++....          .+|+||||+|+..|+.++++.|
T Consensus       190 A~~~~~~~~v~~Ll~~ga~~~~~~----------~~g~tpl~~A~~~~~~~i~~~l  235 (241)
T 1k1a_A          190 ASGRGLLPLVRTLVRSGADSSLKN----------CHNDTPLMVARSRRVIDILRGK  235 (241)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCC----------TTSCCTTTTCSSHHHHHHHTC-
T ss_pred             HHHcCCHHHHHHHHhcCCCCCCcC----------CCCCCHHHHHHhcCcHHHHhhh
Confidence            999999999999999999984433          8999999999999998888776

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=9.7e-34  Score=274.55  Aligned_cols=211  Identities=15%  Similarity=0.171  Sum_probs=185.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|.||||.||..|+.++++.|++.+.+.  ...+..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~   83 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQAGANI--DTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGSTCLHL   83 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCCHHHH
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHHcCCCc--CccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCcHHHH
Confidence            457999999999999999999999987663  44688999999999999999999999988  66788899999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      |+ ..|     +.|++.++..++..|..|.||||+|+..|+.+++++|++              .+.+ .+.+|.+|.||
T Consensus        84 A~-~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------~g~~-~~~~~~~g~t~  147 (237)
T 3b7b_A           84 AA-KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS--------------KGSD-INIRDNEENIC  147 (237)
T ss_dssp             HH-HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCH
T ss_pred             HH-HcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH--------------CCCC-CCccCCCCCCH
Confidence            99 999     888888877788899999999999999999999998863              4444 47789999999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV  236 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~  236 (564)
                      ||+|+..|+.                                ++++.|++     .+.+++.+|..|.||||+|+..|+.
T Consensus       148 L~~A~~~~~~--------------------------------~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~  190 (237)
T 3b7b_A          148 LHWAAFSGCV--------------------------------DIAEILLA-----AKCDLHAVNIHGDSPLHIAARENRY  190 (237)
T ss_dssp             HHHHHHHCCH--------------------------------HHHHHHHT-----TTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHCCCH--------------------------------HHHHHHHH-----cCCCCCCcCCCCCCHHHHHHHhCCH
Confidence            9999999965                                56666654     3567788899999999999999999


Q ss_pred             HHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCC
Q 043183          237 GFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQ  279 (564)
Q Consensus       237 ~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~  279 (564)
                      +++++|+++++++....          .+|+||||+|+..++.
T Consensus       191 ~~v~~Ll~~gad~~~~d----------~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          191 DCVVLFLSRDSDVTLKN----------KEGETPLQCASLNSQV  223 (237)
T ss_dssp             HHHHHHHTTTCCTTCCC----------TTSCCHHHHSCTTCHH
T ss_pred             hHHHHHHHcCCCCCccC----------CCCCCHHHHHHHHHHH
Confidence            99999999999984443          8999999999999874

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9.8e-34  Score=300.35  Aligned_cols=253  Identities=19%  Similarity=0.159  Sum_probs=203.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      +.+|.||||.||..|+.++|+.|++.+.+.  ...+..|.||||+|+..|+.++|++|++.  +.+++.+|..|.||||+
T Consensus        11 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~   86 (437)
T 1n11_A           11 GESGLTPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHC   86 (437)
T ss_dssp             ----CCHHHHHHHHTCHHHHHHHHHTTCCS--CCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHH
Confidence            457999999999999999999999987653  34578899999999999999999999998  66788999999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH-------------------cccCCHHHHHH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS-------------------MNMLLPDVALQ  137 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-------------------~~~~~~~i~~~  137 (564)
                      |+ ..|     +.|++.+.+ ++..|..|.||||+|+..|+.+++++|++                   +..++.++++.
T Consensus        87 A~-~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  164 (437)
T 1n11_A           87 AA-RIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL  164 (437)
T ss_dssp             HH-HHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HH-HCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99 999     888888755 57789999999999999999999999998                   45678899999


Q ss_pred             HHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHh
Q 043183          138 LCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEIS  217 (564)
Q Consensus       138 Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~  217 (564)
                      |++++.+. +..|.+|.||||+|+..|+.                                ++++.|++     .+.+++
T Consensus       165 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~--------------------------------~~v~~Ll~-----~g~~~~  206 (437)
T 1n11_A          165 LLERDAHP-NAAGKNGLTPLHVAVHHNNL--------------------------------DIVKLLLP-----RGGSPH  206 (437)
T ss_dssp             HHHTTCCT-TCCCSSCCCHHHHHHHTTCH--------------------------------HHHHHHGG-----GTCCSC
T ss_pred             HHhCCCCC-CCCCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHh-----CCCCCC
Confidence            99987765 67888999999999999864                                55665543     233456


Q ss_pred             hhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHh
Q 043183          218 RLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFC  297 (564)
Q Consensus       218 ~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv  297 (564)
                      ..+.+|.||||+|+..|+.+++++|++.++++....          ..|+||||+|+..|+.+++++|-           
T Consensus       207 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~----------~~g~t~L~~A~~~g~~~~v~~Ll-----------  265 (437)
T 1n11_A          207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES----------VQGVTPLHLAAQEGHAEMVALLL-----------  265 (437)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------TTCCCHHHHHHHTTCHHHHHHHH-----------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------CCCCCHHHHHHHCCCHHHHHHHH-----------
Confidence            667788889999999999999999888887764332          78889999999888877776651           


Q ss_pred             HhhcccchHHhhccCCCCchhhhHH
Q 043183          298 EKVVQRGFAEAKNREGLTPRALFTK  322 (564)
Q Consensus       298 ~~~~~~~~~~~~n~~g~t~~dl~~~  322 (564)
                      +   .....+..|..|.||..+..+
T Consensus       266 ~---~~~~~~~~~~~g~t~L~~A~~  287 (437)
T 1n11_A          266 S---KQANGNLGNKSGLTPLHLVAQ  287 (437)
T ss_dssp             T---TTCCTTCCCTTCCCHHHHHHH
T ss_pred             h---cCCCCCCCCCCCCCHHHHHHH
Confidence            1   112234566778888776543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=9.4e-34  Score=281.55  Aligned_cols=213  Identities=14%  Similarity=0.051  Sum_probs=167.4

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhCcc--ccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcH
Q 043183            1 LTRSRRLQTYRAALNGDWAVAKSIYDVYEG--EIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTA   78 (564)
Q Consensus         1 l~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~--~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~Tp   78 (564)
                      .|.+|+||||.||+.|+.++++.|++.+..  .+ ...+..|.||||+|+..|+.++|++|++.  +.+++.+|..|.||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL-DLQNDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGGHTA   81 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTSCCH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCH
Confidence            367899999999999999999999988654  23 45688999999999999999999999998  67888999999999


Q ss_pred             HHHHHHhch-----HHHHhcCcc----------------------------------------------cccccCCCCCc
Q 043183           79 LSMLLHLEG-----RVMMKHNRS----------------------------------------------IAMVRDHNQTL  107 (564)
Q Consensus        79 LH~Aa~~~G-----~~Ll~~~~~----------------------------------------------~~~~~d~~G~T  107 (564)
                      ||+|+ ..|     +.|++.++.                                              .++.+|..|.|
T Consensus        82 L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           82 LHLAC-RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHT-TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHH-HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            99999 988     777776533                                              24567889999


Q ss_pred             HHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccC-CCCCcHHHHHHhCCCCCcccccccccchHHHHhhhc
Q 043183          108 PIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRA-GDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLG  186 (564)
Q Consensus       108 pLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~  186 (564)
                      |||+|+..|+.+++++|+              +.+.+. +..+ ..|+||||+|+..|+.                    
T Consensus       161 ~L~~A~~~g~~~~v~~Ll--------------~~g~~~-~~~~~~~g~tpL~~A~~~~~~--------------------  205 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLR--------------DAGADL-NKPEPTCGRTPLHLAVEAQAA--------------------  205 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHH--------------HHTCCT-TCCCTTTCCCHHHHHHHTTCH--------------------
T ss_pred             HHHHHHHcCCHHHHHHHH--------------HcCCCC-CCCCCCCCcCHHHHHHHcCCH--------------------
Confidence            999999999999999885              355555 4455 4699999999999964                    


Q ss_pred             CCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcC
Q 043183          187 AEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTR  266 (564)
Q Consensus       187 ~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G  266 (564)
                                  ++++.|++     .+.+++.+|..|+||||+|+..|+.+++++|+++|+++....          .+|
T Consensus       206 ------------~~v~~Ll~-----~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~----------~~g  258 (282)
T 1oy3_D          206 ------------SVLELLLK-----AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDG----------GDK  258 (282)
T ss_dssp             ------------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------------
T ss_pred             ------------HHHHHHHH-----cCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCC----------Ccc
Confidence                        66776655     356788899999999999999999999999999999985544          899


Q ss_pred             CchHHHHHhcCCC
Q 043183          267 NNILHLAAMLPPQ  279 (564)
Q Consensus       267 ~TpLhlAa~~~~~  279 (564)
                      +|||++|......
T Consensus       259 ~tpl~~a~~~~~~  271 (282)
T 1oy3_D          259 LSPCSSSGSDSDS  271 (282)
T ss_dssp             -------------
T ss_pred             cccccccCCcccc
Confidence            9999999876653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.3e-34  Score=275.31  Aligned_cols=216  Identities=14%  Similarity=0.103  Sum_probs=187.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183            3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML   82 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A   82 (564)
                      ..+.||||.|++.|+.+.++.+++.++... ...+.+|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A   80 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIA   80 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhh-hcCCCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHH
Confidence            458899999999999999999999987754 55689999999999999999999999998  567888999999999999


Q ss_pred             HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHH
Q 043183           83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPL  157 (564)
Q Consensus        83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpL  157 (564)
                      + ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++              .+.+ .+.+|..|.|||
T Consensus        81 ~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------~g~~-~~~~~~~g~t~L  143 (231)
T 3aji_A           81 A-SAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLE--------------GGAN-PDAKDHYDATAM  143 (231)
T ss_dssp             H-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHH
T ss_pred             H-HcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-CCCcCCCCCcHH
Confidence            9 998     788888765 57789999999999999999999999863              4433 477899999999


Q ss_pred             HHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHH
Q 043183          158 HALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVG  237 (564)
Q Consensus       158 h~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~  237 (564)
                      |+|+..|+.                                ++++.|++     .+.+++.+|..|+||||+|+..|+.+
T Consensus       144 ~~A~~~~~~--------------------------------~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~  186 (231)
T 3aji_A          144 HRAAAKGNL--------------------------------KMVHILLF-----YKASTNIQDTEGNTPLHLACDEERVE  186 (231)
T ss_dssp             HHHHHHTCH--------------------------------HHHHHHHH-----TTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHcCCH--------------------------------HHHHHHHh-----cCCCccccCCCCCCHHHHHHHCCCHH
Confidence            999999965                                56666654     35567788999999999999999999


Q ss_pred             HHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          238 FLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       238 iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      ++++|+++|+++....          .+|+||||+|++.++.+++++|
T Consensus       187 ~v~~Ll~~ga~~~~~~----------~~g~t~l~~A~~~~~~~i~~lL  224 (231)
T 3aji_A          187 EAKFLVTQGASIYIEN----------KEEKTPLQVAKGGLGLILKRLA  224 (231)
T ss_dssp             HHHHHHHTTCCSCCCC----------TTSCCHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCC----------CCCCCHHHHHHhhHHHHHHHHH
Confidence            9999999999984433          8999999999998887777665

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.5e-33  Score=271.44  Aligned_cols=210  Identities=14%  Similarity=0.155  Sum_probs=179.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccC-CCCCCCcHHHHHH
Q 043183            5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAK-PNKHGGTALSMLL   83 (564)
Q Consensus         5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~-~d~~G~TpLH~Aa   83 (564)
                      |+||||.||+.|+.++++.|++.++... ...|..|.||||+|+..|+.+++++|++.+...+++. .|..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcccc-ccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            7899999999999999999999988754 4468999999999999999999999999965566666 8899999999999


Q ss_pred             Hhch-----HHHHhcC-cccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHH
Q 043183           84 HLEG-----RVMMKHN-RSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPL  157 (564)
Q Consensus        84 ~~~G-----~~Ll~~~-~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpL  157 (564)
                       ..|     +.|++.+ +..++..|..|.||||+|+..|+.+++++|++              .+. ..+.+|.+|+|||
T Consensus        81 -~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------~g~-~~~~~~~~g~t~L  144 (228)
T 2dzn_A           81 -SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE--------------NGA-SVRIKDKFNQIPL  144 (228)
T ss_dssp             -HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH--------------TTC-CSCCCCTTSCCHH
T ss_pred             -HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH--------------cCC-CccccCCCCCCHH
Confidence             888     7888876 23467789999999999999999999999863              443 4478899999999


Q ss_pred             HHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHH
Q 043183          158 HALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVG  237 (564)
Q Consensus       158 h~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~  237 (564)
                      |+|+..|+.                                ++++.|+    ...+.+++.+|..|+||||+|+..|+.+
T Consensus       145 ~~A~~~~~~--------------------------------~~v~~Ll----~~g~~~~~~~d~~g~t~L~~A~~~~~~~  188 (228)
T 2dzn_A          145 HRAASVGSL--------------------------------KLIELLC----GLGKSAVNWQDKQGWTPLFHALAEGHGD  188 (228)
T ss_dssp             HHHHHTTCH--------------------------------HHHHHHH----TTTCCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHcCCH--------------------------------HHHHHHH----hcCcccccCcCCCCCCHHHHHHHcCCHH
Confidence            999999965                                5666654    3344678889999999999999999999


Q ss_pred             HHHHHH-HhCCCcccccccccchHHHhhcCCchHHHHHhcC
Q 043183          238 FLLILT-REYPNLHISYRRFESSGAHLQTRNNILHLAAMLP  277 (564)
Q Consensus       238 iv~~LL-~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~  277 (564)
                      ++++|+ +.|+++....          .+|+||||+|++.+
T Consensus       189 ~v~~Ll~~~ga~~~~~~----------~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          189 AAVLLVEKYGAEYDLVD----------NKGAKAEDVALNEQ  219 (228)
T ss_dssp             HHHHHHHHHCCCSCCBC----------TTSCBGGGGCSSTT
T ss_pred             HHHHHHHhcCCCCCccC----------CCCCcHHHHHHHHH
Confidence            999999 8899885443          89999999997643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.1e-33  Score=279.74  Aligned_cols=237  Identities=16%  Similarity=0.131  Sum_probs=173.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCccc---------cccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCC
Q 043183            3 RSRRLQTYRAALNGDWAVAKSIYDVYEGE---------IGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNK   73 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~---------l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~   73 (564)
                      ..|.|+||.|+..|+.+.+..++...+..         .....|.+|.||||+||..|+.++|++|++.  +.+++.+|.
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~   90 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNIITA   90 (285)
T ss_dssp             -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEECT
T ss_pred             hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCC
Confidence            46899999999999998888877664321         1133578999999999999999999999998  567888999


Q ss_pred             CCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccc
Q 043183           74 HGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATL  148 (564)
Q Consensus        74 ~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~  148 (564)
                      .|.||||+|+ ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++              .+.+. + 
T Consensus        91 ~g~t~L~~A~-~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~~~-~-  152 (285)
T 3d9h_A           91 DHVSPLHEAC-LGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQ--------------HGASV-Q-  152 (285)
T ss_dssp             TCCCHHHHHH-HTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHH--------------TTCCS-S-
T ss_pred             CCCCHHHHHH-HCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHH--------------CCCCC-C-
Confidence            9999999999 999     888888654 57889999999999999999999999864              44443 2 


Q ss_pred             cCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHH
Q 043183          149 RAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIF  228 (564)
Q Consensus       149 ~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh  228 (564)
                      .+.+|.||||+|+..|+.                                ++++.|++     .+.+++.+|..|.||||
T Consensus       153 ~~~~g~t~L~~A~~~g~~--------------------------------~~v~~Ll~-----~g~~~~~~d~~g~t~L~  195 (285)
T 3d9h_A          153 PESDLASPIHEAARRGHV--------------------------------ECVNSLIA-----YGGNIDHKISHLGTPLY  195 (285)
T ss_dssp             CSCTTSCHHHHHHHHTCH--------------------------------HHHHHHHH-----TTCCTTCCBTTTBCHHH
T ss_pred             CCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHH-----CCCCCCCcCCCCCCHHH
Confidence            355699999999999965                                56666654     34567888999999999


Q ss_pred             HHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHh
Q 043183          229 DAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEA  308 (564)
Q Consensus       229 ~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~  308 (564)
                      +|+..|+.+++++|++.++++.. .          ..|+||||+|+..++.+++++|           ++   .....+.
T Consensus       196 ~A~~~~~~~~v~~Ll~~ga~~~~-~----------~~g~t~L~~A~~~~~~~~v~~L-----------l~---~gad~~~  250 (285)
T 3d9h_A          196 LACENQQRACVKKLLESGADVNQ-G----------KGQDSPLHAVVRTASEELACLL-----------MD---FGADTQA  250 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC-C----------BTTBCHHHHHHHTTCHHHHHHH-----------HH---TTCCTTC
T ss_pred             HHHHcCcHHHHHHHHHCCCCCCC-C----------CCCCCHHHHHHHcCCHHHHHHH-----------HH---CCCCCCC
Confidence            99999999999999999988753 2          7899999999999998887766           11   2334567


Q ss_pred             hccCCCCchhhhH
Q 043183          309 KNREGLTPRALFT  321 (564)
Q Consensus       309 ~n~~g~t~~dl~~  321 (564)
                      +|.+|+||.++..
T Consensus       251 ~d~~g~t~l~~A~  263 (285)
T 3d9h_A          251 KNAEGKRPVELVP  263 (285)
T ss_dssp             CCTTSCCGGGGSC
T ss_pred             cCCCCCCHHHHhc
Confidence            8899999999875

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=279.89  Aligned_cols=211  Identities=17%  Similarity=0.199  Sum_probs=155.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCcccc------ccccCCCCChHHHHHHhcCCH-HHHHHHHHcCCcccccCCCCC
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEI------GIAIAKRGDTALRIAAAGKYI-EFLKELVKIMEAEDLAKPNKH   74 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l------~~~~~~~g~TpLh~Aa~~g~~-~iv~~Ll~~~~~~~l~~~d~~   74 (564)
                      |+++.+||+.||+.|+.++|+.|++.+....      ....+..|.||||.|+..++. ++++.|++.  +.+++.+|.+
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d~~   85 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTSQD   85 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C--CCCTTCCCTT
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcCCC
Confidence            6778899999999999999999998765421      133467899999999998876 488999987  6788999999


Q ss_pred             CCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCcccccc
Q 043183           75 GGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLR  149 (564)
Q Consensus        75 G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~  149 (564)
                      |.||||+|+ ..|     +.|++.+.+ ++.++.+|.||+|+|+..++.+++++|++              .+.+ ++.+
T Consensus        86 G~TpLh~A~-~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~--------------~g~~-~n~~  148 (269)
T 4b93_B           86 GSSPLHVAA-LHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLD--------------SNAK-PNKK  148 (269)
T ss_dssp             SCCHHHHHH-HTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHH--------------TTCC-SCCC
T ss_pred             CCCHHHHHH-HcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHH--------------CCCC-CCCC
Confidence            999999999 999     888888765 57789999999999999999999998863              4444 4788


Q ss_pred             CCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHH
Q 043183          150 AGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFD  229 (564)
Q Consensus       150 d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~  229 (564)
                      |.+|+||||+|+..|+.                                ++++.|++     .+.+++.+|..|+||||+
T Consensus       149 d~~g~TpL~~A~~~g~~--------------------------------~~v~~Ll~-----~gadvn~~~~~g~t~Lh~  191 (269)
T 4b93_B          149 DLSGNTPLIYACSGGHH--------------------------------ELVALLLQ-----HGASINASNNKGNTALHE  191 (269)
T ss_dssp             CTTCCCHHHHHHHTTCG--------------------------------GGHHHHHH-----TTCCTTCBCTTSCBHHHH
T ss_pred             CCCCCCHHHHHHHCCCH--------------------------------HHHHHHHH-----CCCCCCccccCCCcHHHH
Confidence            99999999999999976                                56666654     456788999999999999


Q ss_pred             HHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCC
Q 043183          230 AAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPP  278 (564)
Q Consensus       230 Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~  278 (564)
                      |+..|+.++|++|+++|+++....          .+|+||||+|++.++
T Consensus       192 A~~~g~~~~v~~Ll~~Gad~~~~d----------~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          192 AVIEKHVFVVELLLLHGASVQVLN----------KRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCCCC----------TTSCCSGGGSCTTCH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcC----------CCCCCHHHHHHhCCc
Confidence            999999999999999999984443          899999999987764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=275.41  Aligned_cols=212  Identities=14%  Similarity=0.132  Sum_probs=179.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |.+|+||||.||..|+.++++.|++.+.+ + ...|.+|.||||+|+..|+.++|++|++.  +.+++.+|..|.||||+
T Consensus        56 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~  131 (285)
T 3d9h_A           56 AVSDWSPMHEAAIHGHQLSLRNLISQGWA-V-NIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFN  131 (285)
T ss_dssp             SCCSCCHHHHHHHTTCHHHHHHHHHTTCC-S-CEECTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHH
T ss_pred             CccCCCHHHHHHHcCCHHHHHHHHHCCCC-C-CCcCCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence            56799999999999999999999998765 3 44688999999999999999999999998  67889999999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      |+ ..|     +.|++.+.+. + .+..|.||||+|+..|+.+++++|++              .+.+ ++.+|.+|+||
T Consensus       132 A~-~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~--------------~g~~-~~~~d~~g~t~  193 (285)
T 3d9h_A          132 AC-VSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIA--------------YGGN-IDHKISHLGTP  193 (285)
T ss_dssp             HH-HHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCCBTTTBCH
T ss_pred             HH-HcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHH--------------CCCC-CCCcCCCCCCH
Confidence            99 998     8888887654 2 24459999999999999999999863              4444 47889999999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV  236 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~  236 (564)
                      ||+|+..|+.                                ++++.|++.     +.+++ .|..|+||||+|+..|+.
T Consensus       194 L~~A~~~~~~--------------------------------~~v~~Ll~~-----ga~~~-~~~~g~t~L~~A~~~~~~  235 (285)
T 3d9h_A          194 LYLACENQQR--------------------------------ACVKKLLES-----GADVN-QGKGQDSPLHAVVRTASE  235 (285)
T ss_dssp             HHHHHHTTCH--------------------------------HHHHHHHHT-----TCCTT-CCBTTBCHHHHHHHTTCH
T ss_pred             HHHHHHcCcH--------------------------------HHHHHHHHC-----CCCCC-CCCCCCCHHHHHHHcCCH
Confidence            9999999965                                677777653     33444 388999999999999999


Q ss_pred             HHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          237 GFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       237 ~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      +++++|+++++++....          .+|+||||+|+.  +.+++++|
T Consensus       236 ~~v~~Ll~~gad~~~~d----------~~g~t~l~~A~~--~~~~~~~L  272 (285)
T 3d9h_A          236 ELACLLMDFGADTQAKN----------AEGKRPVELVPP--ESPLAQLF  272 (285)
T ss_dssp             HHHHHHHHTTCCTTCCC----------TTSCCGGGGSCT--TSHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcC----------CCCCCHHHHhcC--ccHHHHHH
Confidence            99999999999884443          899999999993  44555554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.4e-33  Score=290.14  Aligned_cols=220  Identities=13%  Similarity=0.055  Sum_probs=185.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|.||||.||..|+.++|+.|++.+.+.  ...|..|.||||+||..|+.++|++|++.+.    +..+..|.||||+
T Consensus        17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~g~t~L~~   90 (364)
T 3ljn_A           17 DDENMEKIHVAARKGQTDEVRRLIETGVSP--TIQNRFGCTALHLACKFGCVDTAKYLASVGE----VHSLWHGQKPIHL   90 (364)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----CCCCBTTBCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----CccccCCCCHHHH
Confidence            457899999999999999999999987653  4468899999999999999999999999943    3334589999999


Q ss_pred             HHHhch-----HHHHhc----Cccc----------------ccccCCCCCcHHHHHHHcC--CCchHHHHHHcccCCHHH
Q 043183           82 LLHLEG-----RVMMKH----NRSI----------------AMVRDHNQTLPIDVAASLG--HKDMPICMVSMNMLLPDV  134 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~----~~~~----------------~~~~d~~G~TpLh~Aa~~g--~~~iv~~Ll~~~~~~~~i  134 (564)
                      |+ ..|     +.|++.    +.+.                .+..|..|.||||+|+..|  +.+++++|++        
T Consensus        91 A~-~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~--------  161 (364)
T 3ljn_A           91 AV-MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ--------  161 (364)
T ss_dssp             HH-HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH--------
T ss_pred             HH-HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH--------
Confidence            99 999     777776    3221                1227888999999999999  8999998864        


Q ss_pred             HHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChh
Q 043183          135 ALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDS  214 (564)
Q Consensus       135 ~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~  214 (564)
                            .+.+ ++.+|.+|+||||+|+..|+.                                ++++.|++...+....
T Consensus       162 ------~ga~-~~~~d~~g~t~L~~A~~~g~~--------------------------------~~v~~Ll~~g~~~~~~  202 (364)
T 3ljn_A          162 ------LGAS-PTAKDKADETPLMRAMEFRNR--------------------------------EALDLMMDTVPSKSSL  202 (364)
T ss_dssp             ------HTCC-TTCCCTTSCCHHHHHHHTTCH--------------------------------HHHHHHHHHCSCSSSC
T ss_pred             ------cCCC-CcccCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHhcccccccc
Confidence                  5444 478899999999999999965                                6777787765544455


Q ss_pred             hHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          215 EISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       215 ~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      +++.+|..|+||||+|+..|+.+++++|+++|+++....          .+|+||||+|+..|+.+++++|
T Consensus       203 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d----------~~g~tpL~~A~~~g~~~~v~~L  263 (364)
T 3ljn_A          203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED----------NEHTVPLYLSVRAAMVLLTKEL  263 (364)
T ss_dssp             CTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCC----------TTSCCHHHHHHHTCCHHHHHHH
T ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------CCCCCHHHHHHHhChHHHHHHH
Confidence            588899999999999999999999999999999984433          8999999999999999998877

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.98  E-value=8.7e-33  Score=277.50  Aligned_cols=221  Identities=16%  Similarity=0.109  Sum_probs=187.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      +++|.||||.||..|+.++++.|++.+.+ + ...|.+|.||||+||..|+.++|++|++.  +.+++.+|..|.||||+
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~  112 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGAD-I-NYANVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHA  112 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCC-T-TCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCC-C-cccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHH
Confidence            35678999999999999999999999866 3 44688999999999999999999999998  67889999999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCC------------HHHHHHHHHcCCc
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLL------------PDVALQLCRDRPK  144 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~------------~~i~~~Ll~~~~~  144 (564)
                      |+ ..|     +.|++.+.+ ++..|..|.||||+|+..++.+++++++......            ...+..++..+..
T Consensus       113 A~-~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (299)
T 1s70_B          113 AA-SCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (299)
T ss_dssp             HH-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HH-HcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence            99 999     888888755 5778999999999999999999999988632222            2335566777766


Q ss_pred             cccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCc
Q 043183          145 LATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPG  224 (564)
Q Consensus       145 ~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~  224 (564)
                      .....+..|.||||+|+..|+.                                ++++.|++     .+.+++.+|..|.
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~--------------------------------~~v~~Ll~-----~g~d~~~~d~~g~  233 (299)
T 1s70_B          191 NDVRHAKSGGTALHVAAAKGYT--------------------------------EVLKLLIQ-----ARYDVNIKDYDGW  233 (299)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCH--------------------------------HHHHHHHT-----TTCCTTCCCTTCC
T ss_pred             chhhhcCCCCCHHHHHHHCCcH--------------------------------HHHHHHHH-----cCCCCCCcCCCCC
Confidence            6677888999999999999965                                56666643     4567888999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHh
Q 043183          225 ALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAM  275 (564)
Q Consensus       225 TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~  275 (564)
                      ||||+|+..|+.+++++|+++|+++....          ..|+||||+|++
T Consensus       234 tpL~~A~~~~~~~~v~~Ll~~gad~~~~d----------~~g~t~l~~A~~  274 (299)
T 1s70_B          234 TPLHAAAHWGKEEACRILVENLCDMEAVN----------KVGQTAFDVADE  274 (299)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------TTSCCTTTSCCS
T ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCCCCcC----------CCCCCHHHHHHH
Confidence            99999999999999999999999984433          899999999965

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.98  E-value=8.2e-33  Score=287.51  Aligned_cols=218  Identities=17%  Similarity=0.131  Sum_probs=182.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHH--------HhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCC
Q 043183            3 RSRRLQTYRAALNGDWAVAKSIY--------DVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKH   74 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~~~v~~Ll--------~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~   74 (564)
                      ..|+||||.||..|+.++++.|+        +.+.+ + ...|.+|.||||+|+..|+.++|++|++.  +.+++.+|..
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~  198 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-V-NAMDCDENTPLMLAVLARRRRLVAYLMKA--GADPTIYNKS  198 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTT
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-C-cCCCCCCCCHHHHHHHcChHHHHHHHHHC--CCCCcccCCC
Confidence            57999999999999998888877        44443 3 44688999999999999999999999998  6778889999


Q ss_pred             CCcHHHHHHHhch-----HHHHhcCc--ccccccCCCCCcHHHHHHHcC---CCchHHHHHHcccCCHHHHHHHHHcCCc
Q 043183           75 GGTALSMLLHLEG-----RVMMKHNR--SIAMVRDHNQTLPIDVAASLG---HKDMPICMVSMNMLLPDVALQLCRDRPK  144 (564)
Q Consensus        75 G~TpLH~Aa~~~G-----~~Ll~~~~--~~~~~~d~~G~TpLh~Aa~~g---~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~  144 (564)
                      |.||||+|+ ..|     +.|++.+.  ..++..|..|.||||+|+..+   +.+++++|++              .+.+
T Consensus       199 g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~--------------~g~~  263 (373)
T 2fo1_E          199 ERSALHQAA-ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVE--------------KGAK  263 (373)
T ss_dssp             CCCHHHHHH-HTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHH--------------HTCC
T ss_pred             CCCHHHHHH-HCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHH--------------CCCC
Confidence            999999999 998     77777653  356778999999999999988   6777787754              4444


Q ss_pred             cc-------cccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHh
Q 043183          145 LA-------TLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEIS  217 (564)
Q Consensus       145 ~~-------~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~  217 (564)
                      ..       ...|.+|.||||+|+..|+.                                ++++.|++    ..+.+++
T Consensus       264 ~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~--------------------------------~~v~~Ll~----~~~~~~n  307 (373)
T 2fo1_E          264 VDYDGAARKDSEKYKGRTALHYAAQVSNM--------------------------------PIVKYLVG----EKGSNKD  307 (373)
T ss_dssp             SSCCSGGGTSSSSCCCCCTHHHHHSSCCH--------------------------------HHHHHHHH----HSCCCTT
T ss_pred             cccccccccCcccccCCCHHHHHHHhCCH--------------------------------HHHHHHHH----hcCCCcc
Confidence            32       24678999999999999965                                56666654    3456788


Q ss_pred             hhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          218 RLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       218 ~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      .+|..|+||||+|+..|+.+++++|+++|+++....          .+|+||||+|+..|+.+++++|
T Consensus       308 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d----------~~g~t~l~~A~~~g~~~iv~~L  365 (373)
T 2fo1_E          308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD----------ATDHTARQLAQANNHHNIVDIF  365 (373)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC----------SSSCCHHHHHHHTTCHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCC----------CCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999984433          8999999999999999988876

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=9.2e-31  Score=268.01  Aligned_cols=208  Identities=16%  Similarity=0.089  Sum_probs=169.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|.||||.||..|+.++++.|++.+.+.  ...|..|.||||+|+..|+.+++++|++.  +.+++..|..|.||||+
T Consensus        55 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~  130 (351)
T 3utm_A           55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADV--HAKDKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTPLHE  130 (351)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence            467999999999999999999999987663  44688999999999999999999999998  67788899999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccC------------------------------------------------------
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRD------------------------------------------------------  102 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d------------------------------------------------------  102 (564)
                      |+ ..|     +.|++.+.+ ++..|                                                      
T Consensus       131 A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  208 (351)
T 3utm_A          131 AA-SKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP  208 (351)
T ss_dssp             HH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCT
T ss_pred             HH-HcCCHHHHHHHHHcCCC-CccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCC
Confidence            99 999     788887654 23333                                                      


Q ss_pred             CCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHH
Q 043183          103 HNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRC  182 (564)
Q Consensus       103 ~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~  182 (564)
                      ..|.||||+|+..++.           +..++++.|++.+.+. +.+|.+|+||||+|+..|+.                
T Consensus       209 ~~~~t~L~~A~~~~~~-----------~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~----------------  260 (351)
T 3utm_A          209 QSHETALHCAVASLHP-----------KRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHN----------------  260 (351)
T ss_dssp             TTCCCHHHHHHHCCST-----------THHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCH----------------
T ss_pred             CCCCCHHHHHHHHhCc-----------cHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCH----------------
Confidence            4456666666666432           1233344445566554 78899999999999999965                


Q ss_pred             hhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHH
Q 043183          183 FNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAH  262 (564)
Q Consensus       183 ~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~  262 (564)
                                      ++++.|++     .+.+++.+|..|+||||+|+..|+.+++++|+++|+++....         
T Consensus       261 ----------------~~v~~Ll~-----~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~---------  310 (351)
T 3utm_A          261 ----------------DVMEVLHK-----HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS---------  310 (351)
T ss_dssp             ----------------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC---------
T ss_pred             ----------------HHHHHHHH-----CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC---------
Confidence                            66776655     456788899999999999999999999999999999984433         


Q ss_pred             hhcCCchHHHHH
Q 043183          263 LQTRNNILHLAA  274 (564)
Q Consensus       263 ~~~G~TpLhlAa  274 (564)
                       .+|+||+|+|.
T Consensus       311 -~~g~tal~~a~  321 (351)
T 3utm_A          311 -LQGFTAAQMGN  321 (351)
T ss_dssp             -TTSCCHHHHSC
T ss_pred             -CCCCChhhhhh
Confidence             89999999983

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=5.8e-32  Score=268.61  Aligned_cols=228  Identities=15%  Similarity=0.121  Sum_probs=166.1

Q ss_pred             cccCCCCChHHHHHHhcCCHHHHHHHHHcCCcc-cccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCc
Q 043183           34 IAIAKRGDTALRIAAAGKYIEFLKELVKIMEAE-DLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTL  107 (564)
Q Consensus        34 ~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~-~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~T  107 (564)
                      ...|.+|.||||+||..|+.++|++|++.+... .++.+|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|.|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~-~~~~~~~g~t   80 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA-ILGEASTVEKLYAAGAG-VLVAERGGHT   80 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCC-SSCCCTTSCC
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCCCCCCCCC
Confidence            346889999999999999999999999984332 28889999999999999 999     888888765 5788999999


Q ss_pred             HHHHHHHcCCCchHHHHHHcccCC--------------------------------HHHHHHHHHcCCccccccCCCCCc
Q 043183          108 PIDVAASLGHKDMPICMVSMNMLL--------------------------------PDVALQLCRDRPKLATLRAGDCET  155 (564)
Q Consensus       108 pLh~Aa~~g~~~iv~~Ll~~~~~~--------------------------------~~i~~~Ll~~~~~~~~~~d~~G~T  155 (564)
                      |||+|+..|+.+++++|++.....                                ......++.......+.+|..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            999999999999999998621110                                000000111111234678999999


Q ss_pred             HHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhc-CCchHHHHHHHcC
Q 043183          156 PLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLIS-KPGALIFDAAKQG  234 (564)
Q Consensus       156 pLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~-~G~TpLh~Aa~~g  234 (564)
                      |||+|+..|+.                                ++++.|++.     +.+++.++. .|+||||+|+..|
T Consensus       161 ~L~~A~~~g~~--------------------------------~~v~~Ll~~-----g~~~~~~~~~~g~tpL~~A~~~~  203 (282)
T 1oy3_D          161 PLHVAVIHKDA--------------------------------EMVRLLRDA-----GADLNKPEPTCGRTPLHLAVEAQ  203 (282)
T ss_dssp             HHHHHHHTTCH--------------------------------HHHHHHHHH-----TCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHHHcCCH--------------------------------HHHHHHHHc-----CCCCCCCCCCCCcCHHHHHHHcC
Confidence            99999999965                                677777653     345666664 4999999999999


Q ss_pred             CHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCC
Q 043183          235 NVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGL  314 (564)
Q Consensus       235 ~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~  314 (564)
                      +.+++++|+++|+++....          ..|+||||+|++.|+.+++++|           ++   .......+|.+|+
T Consensus       204 ~~~~v~~Ll~~gad~~~~d----------~~g~tpL~~A~~~~~~~~v~~L-----------l~---~ga~~~~~~~~g~  259 (282)
T 1oy3_D          204 AASVLELLLKAGADPTARM----------YGGRTPLGSALLRPNPILARLL-----------RA---HGAPEPEDGGDKL  259 (282)
T ss_dssp             CHHHHHHHHHTTCCTTCCC----------TTSCCHHHHHHTSSCHHHHHHH-----------HH---TTCCCCCCC----
T ss_pred             CHHHHHHHHHcCCCCcccc----------cCCCCHHHHHHHcCCcHHHHHH-----------HH---cCCCcCcCCCccc
Confidence            9999999999999984433          8999999999999998888876           11   2233556888999


Q ss_pred             CchhhhHHHh
Q 043183          315 TPRALFTKEH  324 (564)
Q Consensus       315 t~~dl~~~~~  324 (564)
                      ||.+......
T Consensus       260 tpl~~a~~~~  269 (282)
T 1oy3_D          260 SPCSSSGSDS  269 (282)
T ss_dssp             ----------
T ss_pred             ccccccCCcc
Confidence            9999875543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=6.8e-31  Score=254.05  Aligned_cols=217  Identities=16%  Similarity=0.102  Sum_probs=180.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCccccc-CCCCCCCcHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLA-KPNKHGGTALS   80 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~-~~d~~G~TpLH   80 (564)
                      |..|.||||.|++.|+.++++.|++.+.+.  ...+..|.||||+|+..|+.+++++|++.+  .+++ ..+..|.||||
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEAGYDV--RQPDKENVTLLHWAAINNRIDLVKYYISKG--AIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCBTTTTBCHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHcCCCc--CCCCCCCCCHHHHHHHhCCHHHHHHHHHcC--CcchhhcCCcCCChhH
Confidence            567899999999999999999999987653  446889999999999999999999999984  3433 44556999999


Q ss_pred             HHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCc
Q 043183           81 MLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCET  155 (564)
Q Consensus        81 ~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~T  155 (564)
                      +|+ ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++              .+.+ .+.+|.+|.|
T Consensus        82 ~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~--------------~~~~-~~~~~~~g~t  144 (240)
T 3eu9_A           82 WAT-RQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIA--------------KGQD-VDMMDQNGMT  144 (240)
T ss_dssp             HHH-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCC
T ss_pred             HHH-HcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHh--------------cCCC-ccccCCCCCc
Confidence            999 888     788887654 57788999999999999999999999863              4443 4788999999


Q ss_pred             HHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhc-CCchHHHHHHHcC
Q 043183          156 PLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLIS-KPGALIFDAAKQG  234 (564)
Q Consensus       156 pLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~-~G~TpLh~Aa~~g  234 (564)
                      |||+|+..++..                               ++++.+.+     .+.+++..+. .|.||||+|+..|
T Consensus       145 ~l~~a~~~~~~~-------------------------------~~~~~L~~-----~~~~~~~~~~~~g~t~L~~A~~~~  188 (240)
T 3eu9_A          145 PLMWAAYRTHSV-------------------------------DPTRLLLT-----FNVSVNLGDKYHKNTALHWAVLAG  188 (240)
T ss_dssp             HHHHHHHHCCSS-------------------------------TTHHHHHH-----TTCCTTCCCTTTCCCHHHHHHHHT
T ss_pred             HHHHHHHhCChH-------------------------------HHHHHHHh-----cCCCcchhhccCCCcHHHHHHHcC
Confidence            999999777530                               34444433     3445666666 8999999999999


Q ss_pred             CHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          235 NVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       235 ~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      +.+++++|+++++++....          .+|+||||+|++.|+.+++++|
T Consensus       189 ~~~~v~~Ll~~g~~~~~~~----------~~g~t~l~~A~~~~~~~~v~~L  229 (240)
T 3eu9_A          189 NTTVISLLLEAGANVDAQN----------IKGESALDLAKQRKNVWMINHL  229 (240)
T ss_dssp             CHHHHHHHHHHTCCTTCBC----------TTSCBHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCcC----------CCCCCHHHHHHHcCcHHHHHHH
Confidence            9999999999999884433          8999999999999999888876

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=1.2e-31  Score=257.40  Aligned_cols=204  Identities=18%  Similarity=0.152  Sum_probs=154.3

Q ss_pred             CCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHH
Q 043183           16 GDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVM   90 (564)
Q Consensus        16 G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~L   90 (564)
                      |+.++++.|++.+++. ....|.+|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+ ..|     +.|
T Consensus         2 g~~~~i~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~~v~~L   77 (223)
T 2f8y_A            2 DAPAVISDFIYQGASL-HNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAV-SADAQGVFQIL   77 (223)
T ss_dssp             ---CCEETTEETTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-HTTCHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCc-ccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH-HcCCHHHHHHH
Confidence            5677777888776653 344577888888888888888888888887  5567778888888888888 887     777


Q ss_pred             HhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCccc
Q 043183           91 MKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNF  170 (564)
Q Consensus        91 l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f  170 (564)
                      ++.++..++..|..|.||||+|+..|+.+++++|++              .+.+ ++..|.+|+||||+|+..|+.    
T Consensus        78 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~~~----  138 (223)
T 2f8y_A           78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN--------------SHAD-VNAVDDLGKSALHWAAAVNNV----  138 (223)
T ss_dssp             HHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCBCTTSCBHHHHHHHTTCH----
T ss_pred             HHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHH--------------cCCC-CcCcCCCCCcHHHHHHHcCCH----
Confidence            777776677778888888888888888888887753              3333 367788888888888888854    


Q ss_pred             ccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcc
Q 043183          171 INQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLH  250 (564)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~  250 (564)
                                                  ++++.|++     .+.+++.+|..|.||||+|+..|+.+++++|+++++++.
T Consensus       139 ----------------------------~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  185 (223)
T 2f8y_A          139 ----------------------------DAAVVLLK-----NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD  185 (223)
T ss_dssp             ----------------------------HHHHHHHH-----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             ----------------------------HHHHHHHH-----cCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence                                        56666554     245667778888888888888888888888888888764


Q ss_pred             cccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          251 ISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       251 ~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      ...          ..|+||||+|++.++.+++++|
T Consensus       186 ~~~----------~~g~t~l~~A~~~~~~~i~~~L  210 (223)
T 2f8y_A          186 ITD----------HMDRLPRDIAQERMHHDIVRLL  210 (223)
T ss_dssp             CCC----------TTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ccc----------ccCCCHHHHHHHhcchHHHHHH
Confidence            333          7788888888888887777765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=2.1e-30  Score=244.47  Aligned_cols=195  Identities=18%  Similarity=0.087  Sum_probs=167.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      +..+.||||.||..|+.+.++.+++.++..+ ...|.+|.||||+|+..|+.++|++|++.  +.+++.+|..|.||||+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~   78 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDR--GADINLQNSISDSPYLY   78 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHH
Confidence            4568999999999999999999999887555 44688999999999999999999999998  67888999999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      |+ ..|     +.|++..+..++..|..|.||||+|+..|+.+++++|+              +.++...+.+|..|+||
T Consensus        79 A~-~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll--------------~~g~~~~~~~~~~g~t~  143 (201)
T 3hra_A           79 AG-AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL--------------EDGREDIDFQNDFGYTA  143 (201)
T ss_dssp             HH-HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHH--------------HHCCCCTTCCCTTSCCH
T ss_pred             HH-HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHH--------------HcCCCCcCCCCCCCCCH
Confidence            99 999     78887777677889999999999999999999999885              46656668899999999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV  236 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~  236 (564)
                      ||+|+..++..                           ....++++.|++     .+.+++.+|..|.||||+|+..|+.
T Consensus       144 L~~A~~~~~~~---------------------------~~~~~~v~~Ll~-----~ga~~~~~~~~g~t~l~~A~~~~~~  191 (201)
T 3hra_A          144 LIEAVGLREGN---------------------------QLYQDIVKLLME-----NGADQSIKDNSGRTAMDYANQKGYT  191 (201)
T ss_dssp             HHHHHHSSCCS---------------------------HHHHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHhccch---------------------------hhHHHHHHHHHH-----CCCCCCccCCCCCCHHHHHHHcCCH
Confidence            99999988630                           011356666654     3567788999999999999999999


Q ss_pred             HHHHHHHHhC
Q 043183          237 GFLLILTREY  246 (564)
Q Consensus       237 ~iv~~LL~~~  246 (564)
                      +++++|+++|
T Consensus       192 ~~~~~Ll~~G  201 (201)
T 3hra_A          192 EISKILAQYN  201 (201)
T ss_dssp             HHHHHHHTCC
T ss_pred             hHHHHHHhcC
Confidence            9999999865

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=6.1e-30  Score=253.80  Aligned_cols=206  Identities=17%  Similarity=0.129  Sum_probs=177.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      +..|.||||.|+..|+.++++.|++.+.+.  ...+.+|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~  111 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADP--VLRKKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFME  111 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTCCBHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCcccCCHHHH
Confidence            456899999999999999999999987663  34688999999999999999999999998  66788899999999999


Q ss_pred             HHHhch-----HHHHhcCccccccc----------CCCCCcHHHHHHHcCCCchHHHHHH--------------------
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVR----------DHNQTLPIDVAASLGHKDMPICMVS--------------------  126 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~----------d~~G~TpLh~Aa~~g~~~iv~~Ll~--------------------  126 (564)
                      |+ ..|     +.|++.+.+. +..          +..|.||||+|+..|+.+++++|++                    
T Consensus       112 A~-~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a  189 (285)
T 1wdy_A          112 AA-VYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA  189 (285)
T ss_dssp             HH-HTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH
T ss_pred             HH-HhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            99 999     7888887654 333          7789999999999999999999997                    


Q ss_pred             cccCC----HHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHH
Q 043183          127 MNMLL----PDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVE  202 (564)
Q Consensus       127 ~~~~~----~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~  202 (564)
                      +..+.    .++++.|++.+.+. +.+|.+|+||||+|+..|+.                                ++++
T Consensus       190 ~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~--------------------------------~~v~  236 (285)
T 1wdy_A          190 LLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHL--------------------------------GLVQ  236 (285)
T ss_dssp             HHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCH--------------------------------HHHH
T ss_pred             HHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCH--------------------------------HHHH
Confidence            22344    78899999987765 78899999999999999965                                5666


Q ss_pred             HHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcc
Q 043183          203 RLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLH  250 (564)
Q Consensus       203 ~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~  250 (564)
                      .|+    ...+.+++.+|..|+||||+|+..|+.+++++|+++|+++.
T Consensus       237 ~Ll----~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          237 RLL----EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHH----HSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             HHH----hccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence            664    34567788999999999999999999999999999999873

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=2.6e-30  Score=249.70  Aligned_cols=200  Identities=17%  Similarity=0.110  Sum_probs=158.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcc---cccCCCCCCCcHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAE---DLAKPNKHGGTALS   80 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~---~l~~~d~~G~TpLH   80 (564)
                      .|+||||.||+.|+.++++.|++..+..+ ...|..|.||||+|+..|+.+++++|++.+...   ..+.+|..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            58999999999999999999999844444 446899999999999999999999999984321   12677889999999


Q ss_pred             HHHHhch-----HHHHhcCcccccccC-------------CCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcC
Q 043183           81 MLLHLEG-----RVMMKHNRSIAMVRD-------------HNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDR  142 (564)
Q Consensus        81 ~Aa~~~G-----~~Ll~~~~~~~~~~d-------------~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~  142 (564)
                      +|+ ..|     +.|++.+.+. +..+             ..|.||||+|+..|+.+++++|++              .+
T Consensus        81 ~A~-~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g  144 (232)
T 2rfa_A           81 IAV-INQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE--------------HG  144 (232)
T ss_dssp             HHH-HTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH--------------TT
T ss_pred             HHH-HcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH--------------CC
Confidence            999 999     8888887654 3333             379999999999999999999863              44


Q ss_pred             CccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhh-Hhhhhc
Q 043183          143 PKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSE-ISRLIS  221 (564)
Q Consensus       143 ~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~-~~~~d~  221 (564)
                      .+ ++.+|.+|+||||+|+..|+.                        +++    .++++.|++......... .+.+|.
T Consensus       145 a~-~~~~d~~g~t~L~~A~~~~~~------------------------~~~----~~i~~~Ll~~g~~~~~~~~~~~~~~  195 (232)
T 2rfa_A          145 AD-IRAQDSLGNTVLHILILQPNK------------------------TFA----CQMYNLLLSYDGGDHLKSLELVPNN  195 (232)
T ss_dssp             CC-TTCCCTTSCCHHHHHHTCSCH------------------------HHH----HHHHHHHHHTTCSCSSCCGGGCCCT
T ss_pred             CC-CCCCCCCCCCHHHHHHHcCCh------------------------HHH----HHHHHHHHhcCCchhhhhhhccCCC
Confidence            44 478999999999999999954                        221    234455544322211111 267899


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183          222 KPGALIFDAAKQGNVGFLLILTREYPNL  249 (564)
Q Consensus       222 ~G~TpLh~Aa~~g~~~iv~~LL~~~~~~  249 (564)
                      .|+||||+|+..|+.+++++|++++++.
T Consensus       196 ~g~tpl~~A~~~g~~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          196 QGLTPFKLAGVEGNIVMFQHLMQKRKHI  223 (232)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            9999999999999999999999998665

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=9.9e-32  Score=279.36  Aligned_cols=249  Identities=16%  Similarity=0.103  Sum_probs=190.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHc------CCcccccCCCCCC
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKI------MEAEDLAKPNKHG   75 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~------~~~~~l~~~d~~G   75 (564)
                      +..|.||||.||..|+ ++++.|+..+   ++...+..|.||||+||..|+.+++++|+..      ..+.+++.+|..|
T Consensus        91 ~~~g~t~L~~Aa~~~~-~~~~~L~~~~---~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g  166 (373)
T 2fo1_E           91 EPESPIKLHTEAAGSY-AITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE  166 (373)
T ss_dssp             ---CCCHHHHHHHSSS-CCCSCCSTTT---TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS
T ss_pred             CCCCccHHHHHhcCCc-hHHHHhcccc---ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCC
Confidence            4578999999999654 7777776543   3232237899999999999999998888731      1267889999999


Q ss_pred             CcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCC--ccccc
Q 043183           76 GTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRP--KLATL  148 (564)
Q Consensus        76 ~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~--~~~~~  148 (564)
                      .||||+|+ ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++              .+.  ...+.
T Consensus       167 ~TpL~~A~-~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--------------~~~~~~~~~~  230 (373)
T 2fo1_E          167 NTPLMLAV-LARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLN--------------STKLKGDIEE  230 (373)
T ss_dssp             CCHHHHHH-HHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTT--------------SHHHHHTTSC
T ss_pred             CCHHHHHH-HcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHh--------------cCccccChhh
Confidence            99999999 999     888888765 57889999999999999999999999964              221  23467


Q ss_pred             cCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCCh---hhHhhhhcCCch
Q 043183          149 RAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSD---SEISRLISKPGA  225 (564)
Q Consensus       149 ~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~---~~~~~~d~~G~T  225 (564)
                      .|.+|.||||+|+..+..+                             ..++++.|++...+.+.   ...+..|..|.|
T Consensus       231 ~d~~g~t~L~~A~~~~~~~-----------------------------~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t  281 (373)
T 2fo1_E          231 LDRNGMTALMIVAHNEGRD-----------------------------QVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  281 (373)
T ss_dssp             CCTTSCCHHHHHHHSCSTT-----------------------------HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             cCCCCCCHHHHHHHhCCcc-----------------------------hHHHHHHHHHCCCCcccccccccCcccccCCC
Confidence            8999999999999987420                             23667777765443322   123346789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhC-CCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccc
Q 043183          226 LIFDAAKQGNVGFLLILTREY-PNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRG  304 (564)
Q Consensus       226 pLh~Aa~~g~~~iv~~LL~~~-~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~  304 (564)
                      |||+|+..|+.+++++|++.+ .++....          .+|+||||+|+..|+.+++++|           ++   ...
T Consensus       282 ~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d----------~~g~TpL~~A~~~g~~~iv~~L-----------l~---~ga  337 (373)
T 2fo1_E          282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQD----------EDGKTPIMLAAQEGRIEVVMYL-----------IQ---QGA  337 (373)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCC----------TTCCCHHHHHHHHTCHHHHHHH-----------HH---TTC
T ss_pred             HHHHHHHhCCHHHHHHHHHhcCCCccCcC----------CCCCCHHHHHHHcCCHHHHHHH-----------HH---cCC
Confidence            999999999999999999887 5653322          8999999999999998888876           11   223


Q ss_pred             hHHhhccCCCCchhhhHHH
Q 043183          305 FAEAKNREGLTPRALFTKE  323 (564)
Q Consensus       305 ~~~~~n~~g~t~~dl~~~~  323 (564)
                      ..+.+|.+|+||.++..+.
T Consensus       338 d~~~~d~~g~t~l~~A~~~  356 (373)
T 2fo1_E          338 SVEAVDATDHTARQLAQAN  356 (373)
T ss_dssp             CSSCCCSSSCCHHHHHHHT
T ss_pred             CccCCCCCCCCHHHHHHHc
Confidence            4556788999999987553

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=4e-30  Score=249.05  Aligned_cols=209  Identities=19%  Similarity=0.149  Sum_probs=177.1

Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHH
Q 043183           35 AIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPI  109 (564)
Q Consensus        35 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpL  109 (564)
                      ..|.+|.||||+|+..|+.+++++|++.  +.+++..|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|.|||
T Consensus         6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L   81 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAA-ENNHLEAVKYLIKAGAL-VDPKDAEGSTCL   81 (237)
T ss_dssp             CSSCCSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH-HTTCHHHHHHHHTTTCC-CCCCCTTSCCHH
T ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHH-HhCCHHHHHHHHhCCCC-CCCCCCCCCcHH
Confidence            3578999999999999999999999998  6678889999999999999 999     788877654 577889999999


Q ss_pred             HHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCc
Q 043183          110 DVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAED  189 (564)
Q Consensus       110 h~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h  189 (564)
                      |+|+..|+.+++++|+              +.++...+..|..|.||||+|+..|+.                       
T Consensus        82 ~~A~~~~~~~~~~~Ll--------------~~~~~~~~~~~~~g~t~L~~A~~~~~~-----------------------  124 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLL--------------SNGQMDVNCQDDGGWTPMIWATEYKHV-----------------------  124 (237)
T ss_dssp             HHHHHTTCHHHHHHHH--------------TTTCCCTTCCCTTSCCHHHHHHHTTCH-----------------------
T ss_pred             HHHHHcCCHHHHHHHH--------------hCCCCCcccCCCCCCCHHHHHHHcCCH-----------------------
Confidence            9999999999999885              356566688899999999999999964                       


Q ss_pred             HHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCch
Q 043183          190 VEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNI  269 (564)
Q Consensus       190 ~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~Tp  269 (564)
                               ++++.|++     .+.+++.+|..|.||||+|+..|+.+++++|++.++++....          ..|+||
T Consensus       125 ---------~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~----------~~g~t~  180 (237)
T 3b7b_A          125 ---------DLVKLLLS-----KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN----------IHGDSP  180 (237)
T ss_dssp             ---------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCC----------TTCCCH
T ss_pred             ---------HHHHHHHH-----CCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC----------CCCCCH
Confidence                     66766655     345677889999999999999999999999999999884433          889999


Q ss_pred             HHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHH
Q 043183          270 LHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTK  322 (564)
Q Consensus       270 LhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~  322 (564)
                      ||+|++.++.+++++|-           +   .......+|.+|+||.++..+
T Consensus       181 L~~A~~~~~~~~v~~Ll-----------~---~gad~~~~d~~g~t~l~~A~~  219 (237)
T 3b7b_A          181 LHIAARENRYDCVVLFL-----------S---RDSDVTLKNKEGETPLQCASL  219 (237)
T ss_dssp             HHHHHHTTCHHHHHHHH-----------T---TTCCTTCCCTTSCCHHHHSCT
T ss_pred             HHHHHHhCCHhHHHHHH-----------H---cCCCCCccCCCCCCHHHHHHH
Confidence            99999999988877651           1   223456678999999998654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=1.6e-30  Score=261.01  Aligned_cols=261  Identities=18%  Similarity=0.152  Sum_probs=189.3

Q ss_pred             HHHHcCCHHHHHHHHHhCcccc-------ccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183           11 RAALNGDWAVAKSIYDVYEGEI-------GIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus        11 ~Aa~~G~~~~v~~Ll~~~~~~l-------~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      .+++.|+.+.++.++.......       ....+.+|.||||.||..|+.++|++|++.  +.+++..|..|.||||+|+
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   81 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQAC   81 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHH
Confidence            5788888899998888744311       112345678999999999999999999998  5678899999999999999


Q ss_pred             Hhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHH
Q 043183           84 HLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLH  158 (564)
Q Consensus        84 ~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh  158 (564)
                       ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++              .+.+ ++..|.+|.||||
T Consensus        82 -~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~l~  144 (299)
T 1s70_B           82 -IDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLIS--------------QGAH-VGAVNSEGDTPLD  144 (299)
T ss_dssp             -HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHH
T ss_pred             -HcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHh--------------CCCC-CCCcCCCCCCHHH
Confidence             999     888887755 57889999999999999999999999863              4444 4778999999999


Q ss_pred             HHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHH
Q 043183          159 ALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGF  238 (564)
Q Consensus       159 ~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~i  238 (564)
                      +|+..+..          ..++.++.................+......++..........+..|.||||+|+..|+.++
T Consensus       145 ~A~~~~~~----------~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  214 (299)
T 1s70_B          145 IAEEEAME----------ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV  214 (299)
T ss_dssp             HCCSHHHH----------HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHH
T ss_pred             HHHhcchH----------HHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHH
Confidence            99987743          12222222111111111111111111111111222222333456789999999999999999


Q ss_pred             HHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchh
Q 043183          239 LLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRA  318 (564)
Q Consensus       239 v~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~d  318 (564)
                      +++|+++++++....          .+|+||||+|+..|+.+++++|           ++   .....+.+|..|+||.+
T Consensus       215 v~~Ll~~g~d~~~~d----------~~g~tpL~~A~~~~~~~~v~~L-----------l~---~gad~~~~d~~g~t~l~  270 (299)
T 1s70_B          215 LKLLIQARYDVNIKD----------YDGWTPLHAAAHWGKEEACRIL-----------VE---NLCDMEAVNKVGQTAFD  270 (299)
T ss_dssp             HHHHHTTTCCTTCCC----------TTCCCHHHHHHHTTCHHHHHHH-----------HH---TTCCTTCCCTTSCCTTT
T ss_pred             HHHHHHcCCCCCCcC----------CCCCcHHHHHHhcCCHHHHHHH-----------HH---cCCCCCCcCCCCCCHHH
Confidence            999999999874433          8999999999999998888776           11   22345668899999999


Q ss_pred             hhHHHh
Q 043183          319 LFTKEH  324 (564)
Q Consensus       319 l~~~~~  324 (564)
                      +..+..
T Consensus       271 ~A~~~~  276 (299)
T 1s70_B          271 VADEDI  276 (299)
T ss_dssp             SCCSGG
T ss_pred             HHHHHH
Confidence            875543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=2.4e-29  Score=241.19  Aligned_cols=191  Identities=15%  Similarity=0.076  Sum_probs=165.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |.+|+||||.||..|+.++++.|++.+.+.  ...|..|.||||+|+..|+.+++++|++.+ +.+++.+|..|.||||+
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~   98 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTTPLIL   98 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHBT-TSCTTCCCTTCCCHHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCcHHHH
Confidence            567999999999999999999999987653  446889999999999999999999999984 44788899999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      |+ ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++              .+. .++.+|..|.||
T Consensus        99 A~-~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~-~~~~~~~~g~t~  161 (223)
T 2f8y_A           99 AA-RLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK--------------NGA-NKDMQNNREETP  161 (223)
T ss_dssp             HH-HHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH--------------TTC-CTTCCCTTCCCH
T ss_pred             HH-HhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHH--------------cCC-CCCCcCCCCcCH
Confidence            99 888     788887655 57789999999999999999999999863              443 447889999999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV  236 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~  236 (564)
                      ||+|+..|+.                                ++++.|++.     +.+++.+|..|.||||+|++.|+.
T Consensus       162 L~~A~~~~~~--------------------------------~~v~~Ll~~-----ga~~~~~~~~g~t~l~~A~~~~~~  204 (223)
T 2f8y_A          162 LFLAAREGSY--------------------------------ETAKVLLDH-----FANRDITDHMDRLPRDIAQERMHH  204 (223)
T ss_dssp             HHHHHHHTCH--------------------------------HHHHHHHHT-----TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHcCCH--------------------------------HHHHHHHHc-----CCCCccccccCCCHHHHHHHhcch
Confidence            9999999964                                667766553     456778899999999999999999


Q ss_pred             HHHHHHHHhCCCc
Q 043183          237 GFLLILTREYPNL  249 (564)
Q Consensus       237 ~iv~~LL~~~~~~  249 (564)
                      +++++|++++...
T Consensus       205 ~i~~~L~~~g~~~  217 (223)
T 2f8y_A          205 DIVRLLDEYNLVR  217 (223)
T ss_dssp             HHHHHHHHTTCSS
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999998764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.5e-31  Score=259.27  Aligned_cols=212  Identities=15%  Similarity=0.063  Sum_probs=171.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhCcc---ccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCc
Q 043183            1 LTRSRRLQTYRAALNGDWAVAKSIYDVYEG---EIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGT   77 (564)
Q Consensus         1 l~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~---~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~T   77 (564)
                      .|.+|+||||.|+..|+.++++.|++..+.   .+ ...|..|.||||+|+..|+.++|++|++.  +.+++.+|..|.|
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t   80 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNT   80 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCCC
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHh-hccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCC
Confidence            367899999999999999999999987653   23 44688999999999999999999999988  6788899999999


Q ss_pred             HHHHHHHhch-----HHHHhcCc-----ccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCcccc
Q 043183           78 ALSMLLHLEG-----RVMMKHNR-----SIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLAT  147 (564)
Q Consensus        78 pLH~Aa~~~G-----~~Ll~~~~-----~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~  147 (564)
                      |||+|+ ..|     +.|++.+.     ...+..|..|.||||+|+..|+.+++++|++              .+.+. +
T Consensus        81 ~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~~~-~  144 (236)
T 1ikn_D           81 PLHLAC-EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS--------------LGADV-N  144 (236)
T ss_dssp             HHHHHH-HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH--------------HTCCT-T
T ss_pred             HHHHHH-HcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCCC-C
Confidence            999999 998     78888764     3357788899999999999999999999853              55554 6


Q ss_pred             ccCC-CCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchH
Q 043183          148 LRAG-DCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGAL  226 (564)
Q Consensus       148 ~~d~-~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~Tp  226 (564)
                      .+|. .|+||||+|+..|+.                                ++++.|++     .+.+++.+|..|.||
T Consensus       145 ~~~~~~g~tpL~~A~~~~~~--------------------------------~~v~~Ll~-----~ga~~~~~~~~g~tp  187 (236)
T 1ikn_D          145 AQEPCNGRTALHLAVDLQNP--------------------------------DLVSLLLK-----CGADVNRVTYQGYSP  187 (236)
T ss_dssp             CCCTTTCCCHHHHHHHTTCH--------------------------------HHHHHHHT-----TTCCSCCCCTTCCCG
T ss_pred             CCCCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHH-----cCCCCCcccCCCCCH
Confidence            6776 999999999999964                                56666654     466788899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCcccc-cccccchHHHhhcCCchHHHHHhcC
Q 043183          227 IFDAAKQGNVGFLLILTREYPNLHIS-YRRFESSGAHLQTRNNILHLAAMLP  277 (564)
Q Consensus       227 Lh~Aa~~g~~~iv~~LL~~~~~~~~~-~~r~~~i~n~~~~G~TpLhlAa~~~  277 (564)
                      ||+|+..|+.+++++|+++|++.... .+         .+|.||.+.+....
T Consensus       188 l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~---------~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          188 YQLTWGRPSTRIQQQLGQLTLENLQMLPE---------SEDEESYDTESEFT  230 (236)
T ss_dssp             GGGCTTSSCHHHHHHHHTTSCGGGSSCCC---------CCTTTCCCCC----
T ss_pred             HHHHHccCchHHHHHHHHcchhhhhcCCc---------cchHHHHhhhcccc
Confidence            99999999999999999999876411 11         78888887765443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=5.5e-30  Score=256.14  Aligned_cols=205  Identities=15%  Similarity=0.073  Sum_probs=165.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|.||||.|+..|+.++++.|++.+.+. +.   .+|.||||+|+..|+.++|++|++.  +.+++.+|..|.||||+
T Consensus        28 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~---~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~  101 (285)
T 3kea_A           28 DVHGHSASYYAIADNNVRLVCTLLNAGALK-NL---LENEFPLHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTALYY  101 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SC---CTTCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CC---CCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHH
Confidence            567999999999999999999999987652 22   2589999999999999999999988  66788889999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCC-CcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCC-CCC
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQ-TLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAG-DCE  154 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G-~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~-~G~  154 (564)
                      |+ ..|     +.|++.+.+ ++.+|..| .||||+|+..|+.+++++|++              .+++.   .|. .|.
T Consensus       102 A~-~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~--------------~g~~~---~~~~~g~  162 (285)
T 3kea_A          102 AV-DSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLS--------------EIPST---FDLAILL  162 (285)
T ss_dssp             HH-HTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHT--------------TSCTT---CCCSTHH
T ss_pred             HH-HcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHh--------------CCCcc---ccccCCc
Confidence            99 888     788888755 57788888 799999999999999998864              44433   333 889


Q ss_pred             cHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchH-HHHHHHc
Q 043183          155 TPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGAL-IFDAAKQ  233 (564)
Q Consensus       155 TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~Tp-Lh~Aa~~  233 (564)
                      ||||+|+..|+.                                ++++.|++     .+.+++.+|..|+|| ||+|+..
T Consensus       163 t~L~~A~~~g~~--------------------------------~~v~~Ll~-----~gad~n~~~~~g~t~~L~~A~~~  205 (285)
T 3kea_A          163 SCIHITIKNGHV--------------------------------DMMILLLD-----YMTSTNTNNSLLFIPDIKLAIDN  205 (285)
T ss_dssp             HHHHHHHHTTCH--------------------------------HHHHHHHH-----HHHHTCTTCCCBCCTTHHHHHHH
T ss_pred             cHHHHHHHcChH--------------------------------HHHHHHHH-----cCCCCCcccCCCCChHHHHHHHc
Confidence            999999999854                                56666655     356788889999997 9999999


Q ss_pred             CCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          234 GNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       234 g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      |+.+++++|+++|+++..              .+   +.|+..|+.+++++|
T Consensus       206 ~~~~~v~~Ll~~gad~~~--------------~~---~~a~~~~~~~iv~~L  240 (285)
T 3kea_A          206 KDIEMLQALFKYDINIYS--------------AN---LENVLLDDAEIAKMI  240 (285)
T ss_dssp             TCHHHHHHHTTSCBCSTT--------------TT---GGGGTTTCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCC--------------CC---hhhhhcCCHHHHHHH
Confidence            999999999999988732              11   356777887777766

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=9.1e-30  Score=246.85  Aligned_cols=212  Identities=17%  Similarity=0.175  Sum_probs=172.5

Q ss_pred             cccCCCCChHHHHHHhcCCHHHHHHHHHcC--CcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCC
Q 043183           34 IAIAKRGDTALRIAAAGKYIEFLKELVKIM--EAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQT  106 (564)
Q Consensus        34 ~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~--~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~  106 (564)
                      ...|.+|.||||+||..|+.+++++|++..  .+.+++.+|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~   80 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV-ITTLPSVVRLLVTAGAS-PMALDRHGQ   80 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHH-HcCCHHHHHHHHHcCCC-ccccCCCCC
Confidence            346889999999999999999999999831  25678899999999999999 999     888887754 577899999


Q ss_pred             cHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCC---ccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHh
Q 043183          107 LPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRP---KLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCF  183 (564)
Q Consensus       107 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~---~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~  183 (564)
                      ||||+|+..|+.+++++|++              .++   ...+..|.+|.||||+|+..|+.                 
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~--------------~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-----------------  129 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLD--------------SAAPGTLDLEARNYDGLTALHVAVNTECQ-----------------  129 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH--------------HSCTTSCCTTCCCTTSCCHHHHHHHHTCH-----------------
T ss_pred             CHHHHHHHcCCHHHHHHHHH--------------cCCCccccccccCcCCCcHHHHHHHcCCH-----------------
Confidence            99999999999999999864              443   13477899999999999999964                 


Q ss_pred             hhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhh-cCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHH
Q 043183          184 NLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLI-SKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAH  262 (564)
Q Consensus       184 ~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~  262 (564)
                                     ++++.|++.     +.+++..| ..|.||||+|+..|+.+++++|+++++++....         
T Consensus       130 ---------------~~~~~Ll~~-----g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------  180 (241)
T 1k1a_A          130 ---------------ETVQLLLER-----GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM---------  180 (241)
T ss_dssp             ---------------HHHHHHHHT-----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBC---------
T ss_pred             ---------------HHHHHHHHc-----CCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC---------
Confidence                           667766553     44566666 789999999999999999999999999884443         


Q ss_pred             hhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHH
Q 043183          263 LQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTK  322 (564)
Q Consensus       263 ~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~  322 (564)
                       .+|+||||+|+..|+.+++++|           ++   .....+.+|.+|+||.++..+
T Consensus       181 -~~g~t~L~~A~~~~~~~~v~~L-----------l~---~ga~~~~~~~~g~tpl~~A~~  225 (241)
T 1k1a_A          181 -YSGSSALHSASGRGLLPLVRTL-----------VR---SGADSSLKNCHNDTPLMVARS  225 (241)
T ss_dssp             -TTSCBHHHHHHHHTCHHHHHHH-----------HH---TTCCTTCCCTTSCCTTTTCSS
T ss_pred             -CCCCCHHHHHHHcCCHHHHHHH-----------Hh---cCCCCCCcCCCCCCHHHHHHh
Confidence             8999999999999998887766           11   223356678899999998643

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=7.3e-30  Score=245.53  Aligned_cols=207  Identities=12%  Similarity=0.061  Sum_probs=169.3

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcC--cccccccCCCCCcHHHHH
Q 043183           40 GDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHN--RSIAMVRDHNQTLPIDVA  112 (564)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~--~~~~~~~d~~G~TpLh~A  112 (564)
                      |+||||.|+..|+.++++.|++.+ +...+.+|..|.||||+|+ ..|     +.|++.+  ++.....|..|.||||+|
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSV-SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcC-ccccccCCCCCCCHHHHHH-HcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            789999999999999999999984 3345568999999999999 999     8888887  554444889999999999


Q ss_pred             HHcCCCchHHHHHHcccCCHHHHHHHHHcC-CccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHH
Q 043183          113 ASLGHKDMPICMVSMNMLLPDVALQLCRDR-PKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVE  191 (564)
Q Consensus       113 a~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~-~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~  191 (564)
                      +..|+.+++++|++              .+ +...+..|.+|.||||+|+..|+.                         
T Consensus        80 ~~~~~~~~~~~Ll~--------------~g~~~~~~~~~~~g~t~L~~A~~~~~~-------------------------  120 (228)
T 2dzn_A           80 CSVGNLEVVKSLYD--------------RPLKPDLNKITNQGVTCLHLAVGKKWF-------------------------  120 (228)
T ss_dssp             HHHCCHHHHHHHHS--------------SSSCCCTTCCCTTCCCHHHHHHHTTCH-------------------------
T ss_pred             HHcCCHHHHHHHHh--------------CCCCcccccCCcCCCCHHHHHHHcCCH-------------------------
Confidence            99999999999863              43 134477899999999999999965                         


Q ss_pred             HHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhC-CCcccccccccchHHHhhcCCchH
Q 043183          192 VQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREY-PNLHISYRRFESSGAHLQTRNNIL  270 (564)
Q Consensus       192 v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~-~~~~~~~~r~~~i~n~~~~G~TpL  270 (564)
                             ++++.|++     .+.+++.+|..|.||||+|+..|+.+++++|++.+ .++....          .+|+|||
T Consensus       121 -------~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d----------~~g~t~L  178 (228)
T 2dzn_A          121 -------EVSQFLIE-----NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD----------KQGWTPL  178 (228)
T ss_dssp             -------HHHHHHHH-----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCC----------TTSCCHH
T ss_pred             -------hHHHHHHH-----cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcC----------CCCCCHH
Confidence                   66776655     35567888999999999999999999999999999 5653332          8999999


Q ss_pred             HHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHH
Q 043183          271 HLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTK  322 (564)
Q Consensus       271 hlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~  322 (564)
                      |+|+..|+.+++++|-      +    +   .......+|.+|+||.++..+
T Consensus       179 ~~A~~~~~~~~v~~Ll------~----~---~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          179 FHALAEGHGDAAVLLV------E----K---YGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HHHHHTTCHHHHHHHH------H----H---HCCCSCCBCTTSCBGGGGCSS
T ss_pred             HHHHHcCCHHHHHHHH------H----h---cCCCCCccCCCCCcHHHHHHH
Confidence            9999999988877651      0    1   233456688899999998643

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=2.9e-29  Score=246.10  Aligned_cols=190  Identities=16%  Similarity=0.098  Sum_probs=162.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|+||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+..|+.+++++|++.+ ..+++.+|..|.||||+
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~  130 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTTPLIL  130 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHST-TSCTTCCCTTCCCHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCcHHHH
Confidence            567999999999999999999999987663  446889999999999999999999999984 34788899999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      |+ ..|     +.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++              .+.+ ++.+|.+|.||
T Consensus       131 A~-~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~--------------~ga~-~~~~~~~g~tp  193 (253)
T 1yyh_A          131 AA-RLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK--------------NGAN-KDMQNNREETP  193 (253)
T ss_dssp             HH-HHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCH
T ss_pred             HH-HcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-CCCcCCCCCCH
Confidence            99 888     888887755 57889999999999999999999999863              4444 47889999999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV  236 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~  236 (564)
                      ||+|+..|+.                                ++++.|++     .+.+++.+|..|+||||+|+++|+.
T Consensus       194 L~~A~~~~~~--------------------------------~~v~~Ll~-----~ga~~~~~d~~g~tpl~~A~~~g~~  236 (253)
T 1yyh_A          194 LFLAAREGSY--------------------------------ETAKVLLD-----HFANRDITDHMDRLPRDIAQERMHH  236 (253)
T ss_dssp             HHHHHHHTCH--------------------------------HHHHHHHH-----TTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHCCCH--------------------------------HHHHHHHH-----cCCCccccccCCCCHHHHHHHcCCH
Confidence            9999999964                                66776655     3556788899999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 043183          237 GFLLILTREYPN  248 (564)
Q Consensus       237 ~iv~~LL~~~~~  248 (564)
                      +++++|.+..+.
T Consensus       237 ~i~~~l~~~~~~  248 (253)
T 1yyh_A          237 DIVRLLDLEHHH  248 (253)
T ss_dssp             HHHHHHHC----
T ss_pred             HHHHHHHHHhhh
Confidence            999999976554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=2.1e-29  Score=242.93  Aligned_cols=189  Identities=15%  Similarity=0.123  Sum_probs=164.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|.||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus        37 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~  112 (231)
T 3aji_A           37 DQDSRTALHWACSAGHTEIVEFLLQLGVPV--NDKDDAGWSPLHIAASAGXDEIVKALLVK--GAHVNAVNQNGCTPLHY  112 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHhCCCC--CCcCCCCCCHHHHHHHcCHHHHHHHHHHc--CCCCCCCCCCCCCHHHH
Confidence            567999999999999999999999987653  44688999999999999999999999998  66788899999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      |+ ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++              .+. .++.+|.+|+||
T Consensus       113 A~-~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~-~~~~~~~~g~t~  175 (231)
T 3aji_A          113 AA-SKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLF--------------YKA-STNIQDTEGNTP  175 (231)
T ss_dssp             HH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH--------------TTC-CSCCCCTTSCCH
T ss_pred             HH-HcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHh--------------cCC-CccccCCCCCCH
Confidence            99 998     778887654 57789999999999999999999999863              443 447889999999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV  236 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~  236 (564)
                      ||+|+..|+.                                ++++.|++     .+.+++.+|..|.||||+|+..++.
T Consensus       176 L~~A~~~~~~--------------------------------~~v~~Ll~-----~ga~~~~~~~~g~t~l~~A~~~~~~  218 (231)
T 3aji_A          176 LHLACDEERV--------------------------------EEAKFLVT-----QGASIYIENKEEKTPLQVAKGGLGL  218 (231)
T ss_dssp             HHHHHHTTCH--------------------------------HHHHHHHH-----TTCCSCCCCTTSCCHHHHSCHHHHH
T ss_pred             HHHHHHCCCH--------------------------------HHHHHHHH-----CCCCCCCCCCCCCCHHHHHHhhHHH
Confidence            9999999964                                66776655     3556788899999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 043183          237 GFLLILTREYPN  248 (564)
Q Consensus       237 ~iv~~LL~~~~~  248 (564)
                      +++++|++++++
T Consensus       219 ~i~~lL~~~~a~  230 (231)
T 3aji_A          219 ILKRLAEGEEAS  230 (231)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHcccccc
Confidence            999999998765

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=7e-30  Score=264.14  Aligned_cols=226  Identities=14%  Similarity=0.078  Sum_probs=178.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCC--ccccc----------
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIME--AEDLA----------   69 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~--~~~l~----------   69 (564)
                      |..|.||||.||..|+.++|+.|++.+...    .+.+|.||||+|+..|+.++|++|++...  +.+++          
T Consensus        50 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  125 (364)
T 3ljn_A           50 NRFGCTALHLACKFGCVDTAKYLASVGEVH----SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDERE  125 (364)
T ss_dssp             CTTCCCHHHHHHHHCCHHHHHHHHHHCCCC----CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCc----cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHh
Confidence            567999999999999999999999998742    23589999999999999999999999721  11222          


Q ss_pred             -------CCCCCCCcHHHHHHHhch-------HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHH
Q 043183           70 -------KPNKHGGTALSMLLHLEG-------RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVA  135 (564)
Q Consensus        70 -------~~d~~G~TpLH~Aa~~~G-------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~  135 (564)
                             .+|..|.||||+|+ ..|       +.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++         
T Consensus       126 ~~~~~~~~~~~~g~t~L~~A~-~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~---------  194 (364)
T 3ljn_A          126 VNEIGSHVKHCKGQTALHWCV-GLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMD---------  194 (364)
T ss_dssp             EEEETTEEEEESCCCHHHHHH-HSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH---------
T ss_pred             hhhhccccCCCCCCCHHHHHH-HcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHh---------
Confidence                   27889999999999 776       788888654 57889999999999999999999999864         


Q ss_pred             HHHHHcCCcc----ccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccC
Q 043183          136 LQLCRDRPKL----ATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALL  211 (564)
Q Consensus       136 ~~Ll~~~~~~----~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~  211 (564)
                           .+++.    ++..|.+|+||||+|+..|+.                                ++++.|++     
T Consensus       195 -----~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~--------------------------------~~v~~Ll~-----  232 (364)
T 3ljn_A          195 -----TVPSKSSLRLDYANKQGNSHLHWAILINWE--------------------------------DVAMRFVE-----  232 (364)
T ss_dssp             -----HCSCSSSCCTTCCCTTCCCTTHHHHTTTCH--------------------------------HHHHHHHT-----
T ss_pred             -----cccccccccccccCCCCCcHHHHHHHcCCH--------------------------------HHHHHHHH-----
Confidence                 44441    578899999999999999964                                56666644     


Q ss_pred             ChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHH-h-hcCCchHHHHHhcCCCCcccc
Q 043183          212 SDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAH-L-QTRNNILHLAAMLPPQDRLNI  284 (564)
Q Consensus       212 ~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~-~-~~G~TpLhlAa~~~~~~~~~~  284 (564)
                      .+.+++.+|..|.||||+|+..|+.+++++|++++++..........-... . ..|+|||+.|+..++.+.+..
T Consensus       233 ~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~  307 (364)
T 3ljn_A          233 MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ  307 (364)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred             cCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHH
Confidence            466788999999999999999999999999999987652211000000000 1 788999999998886655443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=4.4e-29  Score=241.04  Aligned_cols=184  Identities=17%  Similarity=0.119  Sum_probs=155.1

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccc----cccCCCCCcHH
Q 043183           39 RGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIA----MVRDHNQTLPI  109 (564)
Q Consensus        39 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~----~~~d~~G~TpL  109 (564)
                      .|+||||+|+..|+.+++++|++. .+.+++.+|..|.||||+|+ ..|     +.|++.+++..    ..+|..|.|||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~-~g~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L   79 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKF-EGCEVHQRGAMGETALHIAA-LYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL   79 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTT-TCSCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHH-HcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence            589999999999999999999987 36678999999999999999 999     88888887653    45677999999


Q ss_pred             HHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCcccccc-------------CCCCCcHHHHHHhCCCCCccccccccc
Q 043183          110 DVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLR-------------AGDCETPLHALARKNLTSSNFINQNQR  176 (564)
Q Consensus       110 h~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~-------------d~~G~TpLh~Aa~~g~~~~~f~~~~~~  176 (564)
                      |+|+..|+.+++++|++              .+.+. +..             |.+|+||||+|+..|+.          
T Consensus        80 ~~A~~~~~~~~v~~Ll~--------------~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----------  134 (232)
T 2rfa_A           80 HIAVINQNVNLVRALLA--------------RGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSE----------  134 (232)
T ss_dssp             HHHHHTTCHHHHHHHHH--------------TTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCH----------
T ss_pred             HHHHHcCCHHHHHHHHh--------------CCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCH----------
Confidence            99999999999999865              33332 233             44899999999999965          


Q ss_pred             chHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHH----HHHHHhCCCcc--
Q 043183          177 GIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFL----LILTREYPNLH--  250 (564)
Q Consensus       177 ~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv----~~LL~~~~~~~--  250 (564)
                                            ++++.|++     .+.+++.+|..|+||||+|+..|+.+++    ++|++.+++..  
T Consensus       135 ----------------------~~v~~Ll~-----~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~  187 (232)
T 2rfa_A          135 ----------------------EIVRLLIE-----HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK  187 (232)
T ss_dssp             ----------------------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSC
T ss_pred             ----------------------HHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhh
Confidence                                  66777654     3567888999999999999999999988    99999998763  


Q ss_pred             ---cccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          251 ---ISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       251 ---~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                         ...+         .+|+||||+|++.|+.+++++|
T Consensus       188 ~~~~~~~---------~~g~tpl~~A~~~g~~~~v~~L  216 (232)
T 2rfa_A          188 SLELVPN---------NQGLTPFKLAGVEGNIVMFQHL  216 (232)
T ss_dssp             CGGGCCC---------TTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hhhccCC---------CCCCCHHHHHHHcCCHHHHHHH
Confidence               1112         8999999999999999988876

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.2e-29  Score=251.38  Aligned_cols=209  Identities=16%  Similarity=0.142  Sum_probs=151.5

Q ss_pred             cCCCCChHHHHHHhcCCHHHHHHHHHcCCcc------cccCCCCCCCcHHHHHHHhch------HHHHhcCcccccccCC
Q 043183           36 IAKRGDTALRIAAAGKYIEFLKELVKIMEAE------DLAKPNKHGGTALSMLLHLEG------RVMMKHNRSIAMVRDH  103 (564)
Q Consensus        36 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~------~l~~~d~~G~TpLH~Aa~~~G------~~Ll~~~~~~~~~~d~  103 (564)
                      .|..+.||||.||..|+.++|++|++.+...      .++..|..|.||||.|+ ..+      +.|++.+.+ ++.+|.
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-~~~~~~~~v~~Ll~~Gad-vn~~d~   84 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCP-KCAPAQKRLAKVPASGLG-VNVTSQ   84 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCC-TTCCCT
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHH-HhCCHHHHHHHHHHCCCC-CCCcCC
Confidence            4677889999999999999999999885321      25677889999999999 777      556666644 688999


Q ss_pred             CCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHh
Q 043183          104 NQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCF  183 (564)
Q Consensus       104 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~  183 (564)
                      +|+||||+||..|+.+++++|++              .+.+ ++..+.+|.||+|+|+..++.                 
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~--------------~~a~-~~~~~~~g~t~l~~a~~~~~~-----------------  132 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLK--------------HGAN-AGARNADQAVPLHLACQQGHF-----------------  132 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHH--------------TTCC-TTCCCTTCCCHHHHHHHHTCH-----------------
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHh--------------cCCC-cCccCCCCCCccccccccChH-----------------
Confidence            99999999999999999999863              4444 477899999999999999864                 


Q ss_pred             hhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHh
Q 043183          184 NLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHL  263 (564)
Q Consensus       184 ~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~  263 (564)
                                     ++++.|++     .+.+++.+|..|+||||+||..|+.+++++|+++|+++....          
T Consensus       133 ---------------~~~~~Ll~-----~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~----------  182 (269)
T 4b93_B          133 ---------------QVVKCLLD-----SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN----------  182 (269)
T ss_dssp             ---------------HHHHHHHH-----TTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBC----------
T ss_pred             ---------------HHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccc----------
Confidence                           56666654     355778899999999999999999999999999999984433          


Q ss_pred             hcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHH
Q 043183          264 QTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTK  322 (564)
Q Consensus       264 ~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~  322 (564)
                      ..|+||||+|+..|+.+++++|           ++   .....+.+|.+|+||.++..+
T Consensus       183 ~~g~t~Lh~A~~~g~~~~v~~L-----------l~---~Gad~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          183 NKGNTALHEAVIEKHVFVVELL-----------LL---HGASVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             TTSCBHHHHHHHTTCHHHHHHH-----------HH---TTCCSCCCCTTSCCSGGGSCT
T ss_pred             cCCCcHHHHHHHcCCHHHHHHH-----------HH---CCCCCCCcCCCCCCHHHHHHh
Confidence            8999999999999999888876           22   223456688999999998643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=4.7e-29  Score=244.83  Aligned_cols=200  Identities=15%  Similarity=0.108  Sum_probs=153.9

Q ss_pred             CCcHHHHHHHcCCHHHH----HHHHHhCcccccc---ccCCCCChHHHHHHhc---CCHHHHHHHHHcCCccc-------
Q 043183            5 RRLQTYRAALNGDWAVA----KSIYDVYEGEIGI---AIAKRGDTALRIAAAG---KYIEFLKELVKIMEAED-------   67 (564)
Q Consensus         5 g~t~Lh~Aa~~G~~~~v----~~Ll~~~~~~l~~---~~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~-------   67 (564)
                      |+||||.||+.|+.+.+    +.|++.+.+ ++.   ..|.+|.||||+|+..   |+.++|++|++.+...+       
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            78999999999999855    555555554 322   2588999999999999   99999999999842211       


Q ss_pred             --ccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCC-------------CCcHHHHHHHcCCCchHHHHHHc
Q 043183           68 --LAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHN-------------QTLPIDVAASLGHKDMPICMVSM  127 (564)
Q Consensus        68 --l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~-------------G~TpLh~Aa~~g~~~iv~~Ll~~  127 (564)
                        ...+|..|.||||+|+ ..|     +.|++.+.+ ++.+|..             |.||||+|+..|+.+++++|+  
T Consensus        81 ~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll--  156 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAI-EKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL--  156 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH--
T ss_pred             cccccccccCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH--
Confidence              1134578999999999 999     888888765 4556655             999999999999999999985  


Q ss_pred             ccCCHHHHHHHHHc--CCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHH
Q 043183          128 NMLLPDVALQLCRD--RPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLC  205 (564)
Q Consensus       128 ~~~~~~i~~~Ll~~--~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~  205 (564)
                                  +.  .+..++.+|.+|+||||+|+..++.                      +.+..+ ...++++.|+
T Consensus       157 ------------~~~~~ga~~n~~d~~g~TpLh~A~~~~~~----------------------~~~~~~-~~~~iv~~Ll  201 (256)
T 2etb_A          157 ------------ENPHQPASLEATDSLGNTVLHALVMIADN----------------------SPENSA-LVIHMYDGLL  201 (256)
T ss_dssp             ------------HCSSCCCCTTCCCTTSCCHHHHHHHHCCS----------------------CHHHHH-HHHHHHHHHH
T ss_pred             ------------hccccCCCcCccCCCCCCHHHHHHHcccC----------------------CchhhH-HHHHHHHHHH
Confidence                        32  4455588999999999999984432                      211110 0123666665


Q ss_pred             HhhccCChhhH-------hhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183          206 GKVALLSDSEI-------SRLISKPGALIFDAAKQGNVGFLLILTREYPNL  249 (564)
Q Consensus       206 ~~~l~~~~~~~-------~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~  249 (564)
                      +.     +.++       +.+|..|+||||+|+..|+.+++++|++++++.
T Consensus       202 ~~-----ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          202 QM-----GARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HH-----HHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             Hc-----CCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            43     5566       889999999999999999999999999998764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=4e-29  Score=254.96  Aligned_cols=204  Identities=12%  Similarity=0.083  Sum_probs=152.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch
Q 043183            8 QTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG   87 (564)
Q Consensus         8 ~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G   87 (564)
                      .+|.|+..+..++++.|++.+.+ ++...|.+|.||||+||..|+.++|++|++.  +.+++.+|..|.||||+|+ ..|
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~d-vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~--Gad~n~~d~~g~TpLh~A~-~~g  175 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAV-KSV  175 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCC-SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHH-HSS
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH-Hhc
Confidence            35777877778888888876654 3332689999999999999999999999999  6788999999999999999 864


Q ss_pred             --------HHHHhcCcccccccCCCCCcHHHHHHH----cCCCchHHHHHHcccCCHHHHHHHHHc------------CC
Q 043183           88 --------RVMMKHNRSIAMVRDHNQTLPIDVAAS----LGHKDMPICMVSMNMLLPDVALQLCRD------------RP  143 (564)
Q Consensus        88 --------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~----~g~~~iv~~Ll~~~~~~~~i~~~Ll~~------------~~  143 (564)
                              +.|++.....++.+|..|+||||+|+.    .|+.+++++|++.       ...++.+            .+
T Consensus       176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~-------~~~~~~~~~~~~i~~~~~~~g  248 (327)
T 1sw6_A          176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI-------LMGWIVKKQNRPIQSGTNEKE  248 (327)
T ss_dssp             HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH-------HHHHHHHGGGCCEEEC-----
T ss_pred             ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH-------HHHHHhcccchHHHhhhhccc
Confidence                    677777656678899999999999999    8999999999852       1111111            13


Q ss_pred             ccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCC
Q 043183          144 KLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKP  223 (564)
Q Consensus       144 ~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G  223 (564)
                      ..++.+|.+|.||||+|+..                                      +.|++.       +++.+|..|
T Consensus       249 ~~~~~~~~~g~t~L~~a~~~--------------------------------------~~Ll~~-------~~n~~d~~G  283 (327)
T 1sw6_A          249 SKPNDKNGERKDSILENLDL--------------------------------------KWIIAN-------MLNAQDSNG  283 (327)
T ss_dssp             -----------CHHHHHCSH--------------------------------------HHHHHH-------TTTCCCTTS
T ss_pred             CCcccccccCCChhHHHHHH--------------------------------------HHHHHh-------CCCCCCCCC
Confidence            44577899999999999841                                      223332       477889999


Q ss_pred             chHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcC
Q 043183          224 GALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLP  277 (564)
Q Consensus       224 ~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~  277 (564)
                      +||||+|+..|+.++|++|+++|+++....          .+|+||||+|++.|
T Consensus       284 ~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d----------~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          284 DTCLNIAARLGNISIVDALLDYGADPFIAN----------KSGLRPVDFGAGLE  327 (327)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHHTTCCTTCCC----------TTSCCGGGGTCC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcccC----------CCCCCHHHHHHhcC
Confidence            999999999999999999999999984443          89999999999765

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=4.9e-29  Score=247.20  Aligned_cols=203  Identities=15%  Similarity=0.169  Sum_probs=157.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCc---ccc---ccccCCCCChHHHHHHhc---CCHHHHHHHHHcCCc-------
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYE---GEI---GIAIAKRGDTALRIAAAG---KYIEFLKELVKIMEA-------   65 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~---~~l---~~~~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~-------   65 (564)
                      |..|.||||.||+.|+.++|+.|++...   ..+   ....+..|.||||+|+..   |+.++|++|++.+..       
T Consensus        10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~   89 (273)
T 2pnn_A           10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF   89 (273)
T ss_dssp             -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred             CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence            5679999999999999999999998522   111   113478999999999987   999999999998421       


Q ss_pred             --ccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCC--------------CCCcHHHHHHHcCCCchHHHH
Q 043183           66 --EDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDH--------------NQTLPIDVAASLGHKDMPICM  124 (564)
Q Consensus        66 --~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~--------------~G~TpLh~Aa~~g~~~iv~~L  124 (564)
                        .....+|..|.||||+|+ ..|     +.|++.+.+. +.+|.              .|.||||+|+..|+.+++++|
T Consensus        90 i~~~~~~~d~~g~tpL~~A~-~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  167 (273)
T 2pnn_A           90 VNASYTDSYYKGQTALHIAI-ERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL  167 (273)
T ss_dssp             HTCCCCSTTTTTCCHHHHHH-HTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred             hhcccccccCCCCCHHHHHH-HcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence              112336779999999999 999     8888887654 55554              799999999999999999998


Q ss_pred             HHcccCCHHHHHHHHHc--CCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHH
Q 043183          125 VSMNMLLPDVALQLCRD--RPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVE  202 (564)
Q Consensus       125 l~~~~~~~~i~~~Ll~~--~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~  202 (564)
                      +              +.  .+..++.+|.+|+||||+|+..|+.                      ..+... ...++++
T Consensus       168 l--------------~~~~~gad~~~~d~~g~tpLh~A~~~~~~----------------------~~~~~~-~~~~~v~  210 (273)
T 2pnn_A          168 L--------------QNSWQPADISARDSVGNTVLHALVEVADN----------------------TVDNTK-FVTSMYN  210 (273)
T ss_dssp             H--------------HCSSCCCCTTCCCTTSCCHHHHHHHHCCS----------------------CHHHHH-HHHHHHH
T ss_pred             H--------------hcccCCCCceeeCCCCCcHHHHHHHccCc----------------------chhHHH-HHHHHHH
Confidence            5              32  4455688999999999999998863                      111110 1135666


Q ss_pred             HHHHhhccCChhhHh-------hhhcCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 043183          203 RLCGKVALLSDSEIS-------RLISKPGALIFDAAKQGNVGFLLILTREYPN  248 (564)
Q Consensus       203 ~l~~~~l~~~~~~~~-------~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~  248 (564)
                      .|++.     +.+++       .+|..|+||||+|++.|+.+++++|+++|+.
T Consensus       211 ~Ll~~-----ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          211 EILIL-----GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             HHHHH-----HHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHh-----hhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence            66543     44554       5899999999999999999999999999983

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=5.8e-30  Score=248.13  Aligned_cols=211  Identities=12%  Similarity=0.108  Sum_probs=167.2

Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHHcCCc--ccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCc
Q 043183           35 AIAKRGDTALRIAAAGKYIEFLKELVKIMEA--EDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTL  107 (564)
Q Consensus        35 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~--~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~T  107 (564)
                      ..|.+|.||||+|+..|+.+++++|++.+..  .+++.+|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|.|
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t   80 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV-ITNQPEIAEALLGAGCD-PELRDFRGNT   80 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHH-HTTCHHHHHCCCSCCCC-SCCCCTTCCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCCcCCCCCC
Confidence            3588999999999999999999999987532  368899999999999999 999     677776644 5788999999


Q ss_pred             HHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCC-----ccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHH
Q 043183          108 PIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRP-----KLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRC  182 (564)
Q Consensus       108 pLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~-----~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~  182 (564)
                      |||+|+..|+.+++++|++              .+.     ...+..|..|.||||+|+..|+.                
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~--------------~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----------------  130 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQ--------------SCTTPHLHSILKATNYNGHTCLHLASIHGYL----------------  130 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHH--------------STTTTSSSCGGGCCCTTCCCHHHHHHHTTCH----------------
T ss_pred             HHHHHHHcCCHHHHHHHHh--------------cccchhHHHHhhccCCCCCCHHHHHHHcCCH----------------
Confidence            9999999999999999864              332     33577889999999999999965                


Q ss_pred             hhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhc-CCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHH
Q 043183          183 FNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLIS-KPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGA  261 (564)
Q Consensus       183 ~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~-~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n  261 (564)
                                      ++++.|++.     +.+++.+|. .|.||||+|+..|+.+++++|+++|+++....        
T Consensus       131 ----------------~~v~~Ll~~-----g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~--------  181 (236)
T 1ikn_D          131 ----------------GIVELLVSL-----GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT--------  181 (236)
T ss_dssp             ----------------HHHHHHHHH-----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC--------
T ss_pred             ----------------HHHHHHHHc-----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc--------
Confidence                            677777653     456677777 89999999999999999999999999885443        


Q ss_pred             HhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhh
Q 043183          262 HLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALF  320 (564)
Q Consensus       262 ~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~  320 (564)
                        ..|+||||+|+..++.+++++|.           +... .......|.+|.|+.+..
T Consensus       182 --~~g~tpl~~A~~~~~~~~~~~Ll-----------~~ga-~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          182 --YQGYSPYQLTWGRPSTRIQQQLG-----------QLTL-ENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             --TTCCCGGGGCTTSSCHHHHHHHH-----------TTSC-GGGSSCCCCCTTTCCCCC
T ss_pred             --CCCCCHHHHHHccCchHHHHHHH-----------Hcch-hhhhcCCccchHHHHhhh
Confidence              89999999999999988887761           1111 112345677888888764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=2.2e-28  Score=230.60  Aligned_cols=186  Identities=13%  Similarity=0.098  Sum_probs=160.5

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHH
Q 043183           37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDV  111 (564)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~  111 (564)
                      +..+.||||.|+..|+.+.++.|++.. +.+++..|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|.||||+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~   78 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAV-HNNDIEIAKALIDRGAD-INLQNSISDSPYLY   78 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence            457899999999999999999999883 4578999999999999999 999     888888755 57789999999999


Q ss_pred             HHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHH
Q 043183          112 AASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVE  191 (564)
Q Consensus       112 Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~  191 (564)
                      |+..|+.+++++|+              +..+...+..|..|.||||+|+..|+.                         
T Consensus        79 A~~~~~~~~~~~Ll--------------~~~~~~~~~~~~~g~t~L~~A~~~~~~-------------------------  119 (201)
T 3hra_A           79 AGAQGRTEILAYML--------------KHATPDLNKHNRYGGNALIPAAEKGHI-------------------------  119 (201)
T ss_dssp             HHHTTCHHHHHHHH--------------HHSCCCTTCCCTTSCCSHHHHHHTTCH-------------------------
T ss_pred             HHHcCCHHHHHHHH--------------hccCcccccccCCCCcHHHHHHHcCCH-------------------------
Confidence            99999999999885              355656688999999999999999965                         


Q ss_pred             HHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCC-----HHHHHHHHHhCCCcccccccccchHHHhhcC
Q 043183          192 VQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGN-----VGFLLILTREYPNLHISYRRFESSGAHLQTR  266 (564)
Q Consensus       192 v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~-----~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G  266 (564)
                             ++++.|++.    .+.+++.+|..|+||||+|+..|+     .+++++|+++++++....          .+|
T Consensus       120 -------~~v~~Ll~~----g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~----------~~g  178 (201)
T 3hra_A          120 -------DNVKLLLED----GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD----------NSG  178 (201)
T ss_dssp             -------HHHHHHHHH----CCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCC----------TTS
T ss_pred             -------HHHHHHHHc----CCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccC----------CCC
Confidence                   566666543    445788889999999999999998     999999999999984443          899


Q ss_pred             CchHHHHHhcCCCCccccc
Q 043183          267 NNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       267 ~TpLhlAa~~~~~~~~~~l  285 (564)
                      +||||+|++.|+.+++++|
T Consensus       179 ~t~l~~A~~~~~~~~~~~L  197 (201)
T 3hra_A          179 RTAMDYANQKGYTEISKIL  197 (201)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHcCCHhHHHHH
Confidence            9999999999998887765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=1.2e-28  Score=242.41  Aligned_cols=205  Identities=16%  Similarity=0.135  Sum_probs=158.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHH----hCcccc--ccccCCCCChHHHHHH---hcCCHHHHHHHHHcCCc------
Q 043183            1 LTRSRRLQTYRAALNGDWAVAKSIYD----VYEGEI--GIAIAKRGDTALRIAA---AGKYIEFLKELVKIMEA------   65 (564)
Q Consensus         1 l~~~g~t~Lh~Aa~~G~~~~v~~Ll~----~~~~~l--~~~~~~~g~TpLh~Aa---~~g~~~iv~~Ll~~~~~------   65 (564)
                      ++..+.|+||.||+.|+.+.++.|++    .+....  ....+..|.||||+|+   +.|+.++|++|++.+..      
T Consensus         1 ~~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            1 MKVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            35678999999999999997777766    554421  1123478999999999   77999999999998421      


Q ss_pred             ---ccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccC--------------CCCCcHHHHHHHcCCCchHHH
Q 043183           66 ---EDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRD--------------HNQTLPIDVAASLGHKDMPIC  123 (564)
Q Consensus        66 ---~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d--------------~~G~TpLh~Aa~~g~~~iv~~  123 (564)
                         ...+..|..|.||||+|+ ..|     +.|++.+.+ ++.+|              ..|.||||+|+..|+.+++++
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  158 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAI-ERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY  158 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHH-HcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence               235666779999999999 999     888888765 45566              579999999999999999999


Q ss_pred             HHHcccCCHHHHHHHHHc--CCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHH
Q 043183          124 MVSMNMLLPDVALQLCRD--RPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLV  201 (564)
Q Consensus       124 Ll~~~~~~~~i~~~Ll~~--~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv  201 (564)
                      |+              +.  .+..++.+|.+|+||||+|+..++.                      +.+..+ ...+++
T Consensus       159 Ll--------------~~~~~ga~~~~~d~~g~TpLh~A~~~~~~----------------------~~~~~~-~~~~~v  201 (260)
T 3jxi_A          159 LT--------------ENGHKQADLRRQDSRGNTVLHALVAIADN----------------------TRENTK-FVTKMY  201 (260)
T ss_dssp             HH--------------HCSSCCCCTTCCCTTSCCHHHHHHHHCCS----------------------SHHHHH-HHHHHH
T ss_pred             HH--------------hccccCCCCcccCCCCCcHHHHHHHhccC----------------------chhHHH-HHHHHH
Confidence            85              32  4455588999999999999987753                      111111 112566


Q ss_pred             HHHHHhhccCChhhH-------hhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183          202 ERLCGKVALLSDSEI-------SRLISKPGALIFDAAKQGNVGFLLILTREYPNL  249 (564)
Q Consensus       202 ~~l~~~~l~~~~~~~-------~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~  249 (564)
                      +.|++.     +.++       +.+|..|+||||+|++.|+.+++++|++++++.
T Consensus       202 ~~Ll~~-----ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          202 DLLLIK-----CAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHHH-----HHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHh-----CcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence            665543     3445       679999999999999999999999999998764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.95  E-value=2.4e-28  Score=244.20  Aligned_cols=200  Identities=12%  Similarity=0.015  Sum_probs=163.7

Q ss_pred             HHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----
Q 043183           13 ALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----   87 (564)
Q Consensus        13 a~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----   87 (564)
                      +...+.+.+..++....  + ...|.+|.||||+|+..|+.++|++|++.  +.+++.+  +|.||||+|+ ..|     
T Consensus         7 i~~~~~~~v~~lL~~~~--~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~--~g~t~L~~A~-~~g~~~~v   78 (285)
T 3kea_A            7 INTWKSKQLKSFLSSKD--T-FKADVHGHSASYYAIADNNVRLVCTLLNA--GALKNLL--ENEFPLHQAA-TLEDTKIV   78 (285)
T ss_dssp             GGGCCHHHHHHHHHSTT--T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCC--TTCCHHHHHT-TSSSCHHH
T ss_pred             HHhcCHHHHHHHHHhCC--C-CccCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCC--CCCCHHHHHH-HcCCHHHH
Confidence            45567777777776542  3 44689999999999999999999999998  5566666  4999999999 999     


Q ss_pred             HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCC-CcHHHHHHhCCCC
Q 043183           88 RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDC-ETPLHALARKNLT  166 (564)
Q Consensus        88 ~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G-~TpLh~Aa~~g~~  166 (564)
                      +.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++              .+.+ ++.+|..| .||||+|+..|+.
T Consensus        79 ~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--------------~ga~-~~~~~~~g~~t~L~~A~~~~~~  142 (285)
T 3kea_A           79 KILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVK--------------KNWR-LMFYGKTGWKTSFYHAVMLNDV  142 (285)
T ss_dssp             HHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------HCGG-GGGCSSSGGGSHHHHHHHTTCH
T ss_pred             HHHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHh--------------cCCC-CCccCCCCCCCHHHHHHHcCCH
Confidence            888888765 57789999999999999999999999864              5444 47889999 8999999999964


Q ss_pred             CcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhc-CCchHHHHHHHcCCHHHHHHHHHh
Q 043183          167 SSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLIS-KPGALIFDAAKQGNVGFLLILTRE  245 (564)
Q Consensus       167 ~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~-~G~TpLh~Aa~~g~~~iv~~LL~~  245 (564)
                                                      ++++.|++.    .. +.  .|. .|.||||+|+..|+.+++++|+++
T Consensus       143 --------------------------------~~v~~Ll~~----g~-~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  183 (285)
T 3kea_A          143 --------------------------------SIVSYFLSE----IP-ST--FDLAILLSCIHITIKNGHVDMMILLLDY  183 (285)
T ss_dssp             --------------------------------HHHHHHHTT----SC-TT--CCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --------------------------------HHHHHHHhC----CC-cc--ccccCCccHHHHHHHcChHHHHHHHHHc
Confidence                                            667766543    22 22  233 789999999999999999999999


Q ss_pred             CCCcccccccccchHHHhhcCCch-HHHHHhcCCCCccccc
Q 043183          246 YPNLHISYRRFESSGAHLQTRNNI-LHLAAMLPPQDRLNIV  285 (564)
Q Consensus       246 ~~~~~~~~~r~~~i~n~~~~G~Tp-LhlAa~~~~~~~~~~l  285 (564)
                      |+++....          ..|+|| ||+|+..++.+++++|
T Consensus       184 gad~n~~~----------~~g~t~~L~~A~~~~~~~~v~~L  214 (285)
T 3kea_A          184 MTSTNTNN----------SLLFIPDIKLAIDNKDIEMLQAL  214 (285)
T ss_dssp             HHHTCTTC----------CCBCCTTHHHHHHHTCHHHHHHH
T ss_pred             CCCCCccc----------CCCCChHHHHHHHcCCHHHHHHH
Confidence            98874333          789998 9999999999988877

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.95  E-value=1.1e-27  Score=244.83  Aligned_cols=203  Identities=11%  Similarity=0.050  Sum_probs=152.0

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCC-CCCcHHHHHHHhch-----HHHHhcCccc-------------
Q 043183           37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNK-HGGTALSMLLHLEG-----RVMMKHNRSI-------------   97 (564)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~-~G~TpLH~Aa~~~G-----~~Ll~~~~~~-------------   97 (564)
                      +.+|.||||.||+.|+.++|++||+.  +.+++.++. .|.||||+|+ ..|     +.|++++.+.             
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~-~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   98 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAV-QMSREDIVELLLRHGADPVLRKKNGATPFIL   98 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcCHHHHHH-HcCCHHHHHHHHHcCCchhhhccCCCchhHH
Confidence            34578999999999999999999998  677887775 5999999999 999     7888775432             


Q ss_pred             -------------------ccccCCCCCcHHHHHHHcCCCchHHHHHH-----------------------------ccc
Q 043183           98 -------------------AMVRDHNQTLPIDVAASLGHKDMPICMVS-----------------------------MNM  129 (564)
Q Consensus        98 -------------------~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-----------------------------~~~  129 (564)
                                         ++.+|..|.||||+|+..|+.+++++|++                             +..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~  178 (337)
T 4g8k_A           99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  178 (337)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred             HHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence                               34567788888888888888888888876                             223


Q ss_pred             CCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhc
Q 043183          130 LLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVA  209 (564)
Q Consensus       130 ~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l  209 (564)
                      ++.++++.||++.+..++.+|..|.||||.++..+..                            ....++++.|++   
T Consensus       179 g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~----------------------------~~~~~i~~lLl~---  227 (337)
T 4g8k_A          179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD----------------------------SDVEAITHLLLD---  227 (337)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT----------------------------TTHHHHHHHHHH---
T ss_pred             CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc----------------------------ccHHHHHHHHHH---
Confidence            4555566666554444455555666666555544322                            011234554443   


Q ss_pred             cCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHh-CCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          210 LLSDSEISRLISKPGALIFDAAKQGNVGFLLILTRE-YPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       210 ~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~-~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                        .+.+++.+|..|+||||+|+..|+.++++.|++. +.++....          .+|+||||+|++.|+.+++++|
T Consensus       228 --~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d----------~~G~TpL~~A~~~g~~~iv~~L  292 (337)
T 4g8k_A          228 --HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD----------SDGKTALLLAVELKLKKIAELL  292 (337)
T ss_dssp             --TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBC----------TTSCBHHHHHHHTTCHHHHHHH
T ss_pred             --CCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcC----------CCCCCHHHHHHHcCCHHHHHHH
Confidence              4567888999999999999999999999999975 55653332          8999999999999999988876

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=1.5e-27  Score=219.18  Aligned_cols=152  Identities=21%  Similarity=0.288  Sum_probs=108.4

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcC
Q 043183           42 TALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLG  116 (564)
Q Consensus        42 TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g  116 (564)
                      ++|+.||+.|+.++|+.|++.  +.+++.+|..|.||||+|+ ..|     +.+++.+.+ ++.+|.+|+||||+|+..|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~-~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAA-ENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHH-HcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcC
Confidence            356666666666666666665  4556666666666666666 565     555555443 4566777777777777788


Q ss_pred             CCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHh
Q 043183          117 HKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQ  196 (564)
Q Consensus       117 ~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~  196 (564)
                      +.+++++|++              .+.+ ++.+|.+|+||||+|++.|+.                              
T Consensus        82 ~~~~v~~Ll~--------------~gad-vn~~d~~G~TpLh~A~~~g~~------------------------------  116 (169)
T 4gpm_A           82 HKEVVKLLIS--------------KGAD-VNAKDSDGRTPLHHAAENGHK------------------------------  116 (169)
T ss_dssp             CHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTTCH------------------------------
T ss_pred             CHHHHHHHHH--------------CcCC-CCCCCCCCCCHHHHHHHcCCH------------------------------
Confidence            8888888753              4444 477889999999999998854                              


Q ss_pred             HHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183          197 ALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNL  249 (564)
Q Consensus       197 ~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~  249 (564)
                        ++++.|++     .+.+++.+|.+|+||||+|+++|+.+++++|+++|+++
T Consensus       117 --~~v~~Ll~-----~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          117 --EVVKLLIS-----KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             --HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             --HHHHHHHH-----cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence              56666654     35677888999999999999999999999999999987

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=3.3e-28  Score=238.79  Aligned_cols=185  Identities=16%  Similarity=0.074  Sum_probs=149.3

Q ss_pred             CCChHHHHHHhcCCHH----HHHHHHHcCCcccccC----CCCCCCcHHHHHHHhc---h-----HHHHhcCccccc---
Q 043183           39 RGDTALRIAAAGKYIE----FLKELVKIMEAEDLAK----PNKHGGTALSMLLHLE---G-----RVMMKHNRSIAM---   99 (564)
Q Consensus        39 ~g~TpLh~Aa~~g~~~----iv~~Ll~~~~~~~l~~----~d~~G~TpLH~Aa~~~---G-----~~Ll~~~~~~~~---   99 (564)
                      .|+||||.||..|+.+    ++++|++.  +.+++.    +|..|.||||+|+ ..   |     +.|++.+.+...   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~--g~~i~~~~~~~d~~g~t~L~~A~-~~~~~g~~~~v~~Ll~~g~~~~~~~~   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWN--SKYLTDSAYTEGSTGKTCLMKAV-LNLQDGVNACIMPLLQIDKDSGNPKP   77 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSBTTTTBCHHHHHH-HTCBTTBCTTHHHHHHHHHHTTCSSC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHc--CCCcccccccCCCCCCCHHHHHH-HccccchHHHHHHHHhcCCcccchhh
Confidence            3889999999999998    45566656  567777    8999999999999 98   8     888887654321   


Q ss_pred             -------ccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCC-------------CCcHHHH
Q 043183          100 -------VRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGD-------------CETPLHA  159 (564)
Q Consensus       100 -------~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~-------------G~TpLh~  159 (564)
                             .+|..|.||||+|+..|+.+++++|++              .+.+. +.+|..             |.||||+
T Consensus        78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--------------~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~  142 (256)
T 2etb_A           78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE--------------NGADV-HLRACGRFFQKHQGTCFYFGELPLSL  142 (256)
T ss_dssp             GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH--------------TTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHH
T ss_pred             hcccccccccccCCCHHHHHHHcCCHHHHHHHHH--------------cCCCC-CcccccccccccccccccCCCCHHHH
Confidence                   235679999999999999999999864              44443 556654             9999999


Q ss_pred             HHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHH--cCCHH
Q 043183          160 LARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAK--QGNVG  237 (564)
Q Consensus       160 Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~--~g~~~  237 (564)
                      |+..|+.                                ++++.|++.  ...+.+++.+|.+|+||||+|+.  .++.+
T Consensus       143 A~~~~~~--------------------------------~~v~~Ll~~--~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~  188 (256)
T 2etb_A          143 AACTKQW--------------------------------DVVTYLLEN--PHQPASLEATDSLGNTVLHALVMIADNSPE  188 (256)
T ss_dssp             HHHTTCH--------------------------------HHHHHHHHC--SSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred             HHHcCCH--------------------------------HHHHHHHhc--cccCCCcCccCCCCCCHHHHHHHcccCCch
Confidence            9999965                                566666441  01567788999999999999999  88988


Q ss_pred             -------HHHHHHHhCCCc-------ccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          238 -------FLLILTREYPNL-------HISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       238 -------iv~~LL~~~~~~-------~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                             ++++|+++|+++       ....          .+|+||||+|++.|+.+++++|
T Consensus       189 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d----------~~g~tpL~~A~~~g~~~~v~~L  240 (256)
T 2etb_A          189 NSALVIHMYDGLLQMGARLCPTVQLEEISN----------HQGLTPLKLAAKEGKIEIFRHI  240 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCCGGGCCC----------TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHcCCCcccccccccccC----------CCCCCHHHHHHHhCCHHHHHHH
Confidence                   999999998876       2222          8999999999999999988876

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=9e-27  Score=225.01  Aligned_cols=191  Identities=16%  Similarity=0.070  Sum_probs=160.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      +..|.||||.|+..|+.++++.|++.++... ...+..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus        39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~  115 (240)
T 3eu9_A           39 DKENVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPLHWATRQGHLSMVVQLMKY--GADPSLIDGEGCSCIHL  115 (240)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTTTBCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHcCCcch-hhcCCcCCChhHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence            4579999999999999999999999987642 44466799999999999999999999998  66788899999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCC-CchHHHHHHcccCCHHHHHHHHHcCCccccccCC-CCC
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGH-KDMPICMVSMNMLLPDVALQLCRDRPKLATLRAG-DCE  154 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~-~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~-~G~  154 (564)
                      |+ ..|     +.|++.+.+ ++.+|..|.||||+|+..++ .+++++|+              +.+.+. +..+. .|.
T Consensus       116 A~-~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~--------------~~~~~~-~~~~~~~g~  178 (240)
T 3eu9_A          116 AA-QFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLL--------------TFNVSV-NLGDKYHKN  178 (240)
T ss_dssp             HH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHH--------------HTTCCT-TCCCTTTCC
T ss_pred             HH-HcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHHHHHHH--------------hcCCCc-chhhccCCC
Confidence            99 998     788887754 57889999999999997776 77888775              355454 55565 999


Q ss_pred             cHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcC
Q 043183          155 TPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQG  234 (564)
Q Consensus       155 TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g  234 (564)
                      ||||+|+..|+.                                ++++.|++.     +.+++.+|..|.||||+|++.|
T Consensus       179 t~L~~A~~~~~~--------------------------------~~v~~Ll~~-----g~~~~~~~~~g~t~l~~A~~~~  221 (240)
T 3eu9_A          179 TALHWAVLAGNT--------------------------------TVISLLLEA-----GANVDAQNIKGESALDLAKQRK  221 (240)
T ss_dssp             CHHHHHHHHTCH--------------------------------HHHHHHHHH-----TCCTTCBCTTSCBHHHHHHHTT
T ss_pred             cHHHHHHHcCCH--------------------------------HHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHcC
Confidence            999999999965                                677777653     4567788999999999999999


Q ss_pred             CHHHHHHHHHhCCCc
Q 043183          235 NVGFLLILTREYPNL  249 (564)
Q Consensus       235 ~~~iv~~LL~~~~~~  249 (564)
                      +.+++++|++++++.
T Consensus       222 ~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          222 NVWMINHLQEARQAK  236 (240)
T ss_dssp             CHHHHHHHHHHC---
T ss_pred             cHHHHHHHHHhhhcc
Confidence            999999999998764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=2.6e-27  Score=235.61  Aligned_cols=189  Identities=13%  Similarity=0.138  Sum_probs=160.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      ...+++|.|+..|+.+.++.+++...+...+..|.+|.||||+||..|+.++|++|++.+ ..+++..|..|.||||+|+
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSG-VCKVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTS-CCCTTCCCTTSCCHHHHGG
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCcCCCCCCCCCCHHHHHH
Confidence            356889999999999999999987655434557899999999999999999999999993 2378899999999999999


Q ss_pred             Hhch----------HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCC
Q 043183           84 HLEG----------RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDC  153 (564)
Q Consensus        84 ~~~G----------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G  153 (564)
                       ..+          +.+++.+ ......|..|+||||+|+..|+.+++++|++              .+.+ ++.+|.+|
T Consensus       154 -~~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~--------------~gad-~n~~d~~G  216 (276)
T 4hbd_A          154 -LATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLA--------------CEAD-VNVQDDDG  216 (276)
T ss_dssp             -GCCCCSHHHHHHHHHHHHHS-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTS
T ss_pred             -HHHhhhhhhHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHh--------------CCCC-CCCCCCCC
Confidence             653          6677776 4457788899999999999999999999863              4444 48899999


Q ss_pred             CcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHc
Q 043183          154 ETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQ  233 (564)
Q Consensus       154 ~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~  233 (564)
                      +||||+|+..|+.                                ++++.|    +...+.+++.+|..|+||||+|+..
T Consensus       217 ~TpLh~A~~~g~~--------------------------------~iv~~L----l~~~gad~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          217 STALMCACEHGHK--------------------------------EIAGLL----LAVPSCDISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             CCHHHHHHHHTCH--------------------------------HHHHHH----HTSTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHCCCH--------------------------------HHHHHH----HhcCCCCCcCcCCCCCCHHHHHHHc
Confidence            9999999999964                                566665    4446778899999999999999999


Q ss_pred             CCHHHHHHHHHhC
Q 043183          234 GNVGFLLILTREY  246 (564)
Q Consensus       234 g~~~iv~~LL~~~  246 (564)
                      |+.+++++|+++.
T Consensus       261 g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          261 GQSEIASMLYSRM  273 (276)
T ss_dssp             TCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHhcc
Confidence            9999999999875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=7.7e-28  Score=238.54  Aligned_cols=192  Identities=17%  Similarity=0.111  Sum_probs=151.0

Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHHcC--Cccccc----CCCCCCCcHHHHHHHhc---h-----HHHHhcCccc---
Q 043183           35 AIAKRGDTALRIAAAGKYIEFLKELVKIM--EAEDLA----KPNKHGGTALSMLLHLE---G-----RVMMKHNRSI---   97 (564)
Q Consensus        35 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~--~~~~l~----~~d~~G~TpLH~Aa~~~---G-----~~Ll~~~~~~---   97 (564)
                      ..|..|.||||.||+.|+.++|+.|++.+  .+.+++    ..|..|.||||+|+ ..   |     +.|++.+.+.   
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~-~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM-LNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHH-HSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHH-HHHhcCChHHHHHHHHhhccccch
Confidence            35889999999999999999999999853  122333    45889999999999 86   6     8888876432   


Q ss_pred             ---cc----ccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCC--------------CCCcH
Q 043183           98 ---AM----VRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAG--------------DCETP  156 (564)
Q Consensus        98 ---~~----~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~--------------~G~Tp  156 (564)
                         ++    ..|..|.||||+|+..|+.+++++|++              .+.+. +.+|.              .|+||
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~--------------~ga~~-~~~~~~~~~~~~~~~~~~~~g~tp  151 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE--------------NGADV-QAAANGDFFKKTKGRPGFYFGELP  151 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH--------------TTCCT-TCCBCSGGGSSCSSSCCCCSCBSH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH--------------CCCCc-CccccccccccccccccccCCCCH
Confidence               12    256789999999999999999999864              44443 55555              79999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCC-
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGN-  235 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~-  235 (564)
                      ||+|+..|+.                                ++++.|++..  ..+.+++.+|.+|+||||+|+..|+ 
T Consensus       152 L~~A~~~g~~--------------------------------~~v~~Ll~~~--~~gad~~~~d~~g~tpLh~A~~~~~~  197 (273)
T 2pnn_A          152 LSLAACTNQL--------------------------------AIVKFLLQNS--WQPADISARDSVGNTVLHALVEVADN  197 (273)
T ss_dssp             HHHHHHTTCH--------------------------------HHHHHHHHCS--SCCCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred             HHHHHHcCCH--------------------------------HHHHHHHhcc--cCCCCceeeCCCCCcHHHHHHHccCc
Confidence            9999999965                                5666664410  0566788999999999999999998 


Q ss_pred             --------HHHHHHHHHhCCCccc------ccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          236 --------VGFLLILTREYPNLHI------SYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       236 --------~~iv~~LL~~~~~~~~------~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                              .+++++|+++++++..      ..+         .+|+||||+|++.|+.+++++|
T Consensus       198 ~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d---------~~g~TpL~~A~~~g~~~iv~~L  252 (273)
T 2pnn_A          198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITN---------RKGLTPLALAASSGKIGVLAYI  252 (273)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC---------TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhhhcccccccccccC---------CCCCCHHHHHHHhChHHHHHHH
Confidence                    8999999999887631      111         8999999999999999988876

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.93  E-value=1.1e-25  Score=206.90  Aligned_cols=139  Identities=22%  Similarity=0.278  Sum_probs=124.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhc
Q 043183            7 LQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLE   86 (564)
Q Consensus         7 t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~   86 (564)
                      ++|+.||+.|+.++|+.|++.+.+ + ...|.+|.||||+|+..++.++++.|++.  +.+++.+|..|.||||+|+ ..
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-v-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A~-~~   80 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD-V-NASDSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAA-EN   80 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-HT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-C-CCcCCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHHH-Hc
Confidence            579999999999999999999876 3 45689999999999999999999999998  6788999999999999999 99


Q ss_pred             h-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 043183           87 G-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALA  161 (564)
Q Consensus        87 G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa  161 (564)
                      |     +.|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++              .+.+ ++.+|.+|+||||+|+
T Consensus        81 g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~--------------~gad-~~~~d~~G~TpL~~A~  144 (169)
T 4gpm_A           81 GHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLIS--------------KGAD-VNTSDSDGRTPLDLAR  144 (169)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-ccccCCCCCCHHHHHH
Confidence            9     888888765 58889999999999999999999999863              5444 4789999999999999


Q ss_pred             hCCCC
Q 043183          162 RKNLT  166 (564)
Q Consensus       162 ~~g~~  166 (564)
                      +.|+.
T Consensus       145 ~~g~~  149 (169)
T 4gpm_A          145 EHGNE  149 (169)
T ss_dssp             HTTCH
T ss_pred             HcCCH
Confidence            99964

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=7.3e-27  Score=238.18  Aligned_cols=232  Identities=12%  Similarity=0.020  Sum_probs=160.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccc-----cc----------cCCCCChHHHHHHhcCCHHHHHHHHHcCCcc
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIG-----IA----------IAKRGDTALRIAAAGKYIEFLKELVKIMEAE   66 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~-----~~----------~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~   66 (564)
                      +..|.|+++     |+.++++.|++++.+.-.     ..          ......+.+|+|+..+..++++.|++.  +.
T Consensus        49 ~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--g~  121 (327)
T 1sw6_A           49 LPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT--QL  121 (327)
T ss_dssp             BCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTS--CC
T ss_pred             CCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc--CC
Confidence            446788877     999999999998632100     00          011122346889988889999999987  67


Q ss_pred             cccC-CCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCC---CchHHHHHHcccCCHHHHHH
Q 043183           67 DLAK-PNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGH---KDMPICMVSMNMLLPDVALQ  137 (564)
Q Consensus        67 ~l~~-~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~---~~iv~~Ll~~~~~~~~i~~~  137 (564)
                      +++. +|..|.||||+|| ..|     +.|++.+.+ ++.+|.+|+||||+|+..|+   .++++.|++           
T Consensus       122 dvn~~~d~~g~TpLh~Aa-~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~-----------  188 (327)
T 1sw6_A          122 NLNIPVDEHGNTPLHWLT-SIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLD-----------  188 (327)
T ss_dssp             CSCSCCSTTCCCHHHHHH-HTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHH-----------
T ss_pred             CcccccCCCCCcHHHHHH-HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHH-----------
Confidence            8888 8999999999999 999     888998855 57899999999999999998   788887754           


Q ss_pred             HHHcCCccccccCCCCCcHHHHHHh----CCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhh-----
Q 043183          138 LCRDRPKLATLRAGDCETPLHALAR----KNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKV-----  208 (564)
Q Consensus       138 Ll~~~~~~~~~~d~~G~TpLh~Aa~----~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~-----  208 (564)
                         ......+.+|.+|+||||+|+.    .|+                        .        ++++.+++..     
T Consensus       189 ---~~~~~~~~~d~~g~tpLh~A~~~~~~~g~------------------------~--------~~v~~Ll~~~~~~~~  233 (327)
T 1sw6_A          189 ---YLYPCLILEDSMNRTILHHIIITSGMTGC------------------------S--------AAAKYYLDILMGWIV  233 (327)
T ss_dssp             ---HHGGGGGEECTTCCCHHHHHHHHHTSTTC------------------------H--------HHHHHHHHHHHHHHH
T ss_pred             ---hhhccccCCCCCCCCHHHHHHHHcccccc------------------------H--------HHHHHHHHHHHHHHh
Confidence               3323457899999999999998    553                        2        3344443321     


Q ss_pred             ----------ccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCC
Q 043183          209 ----------ALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPP  278 (564)
Q Consensus       209 ----------l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~  278 (564)
                                +...+.+++.+|..|.||||.|+.      +++|++++.+...            .+|+||||+|++.|+
T Consensus       234 ~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~~n~~d------------~~G~TpLh~A~~~g~  295 (327)
T 1sw6_A          234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANMLNAQD------------SNGDTCLNIAARLGN  295 (327)
T ss_dssp             HGGGCCEEEC----------------CHHHHHCS------HHHHHHHTTTCCC------------TTSCCHHHHHHHHCC
T ss_pred             cccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhCCCCCC------------CCCCCHHHHHHHcCC
Confidence                      112367888999999999999996      8999998544332            899999999999999


Q ss_pred             CCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhh
Q 043183          279 QDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALF  320 (564)
Q Consensus       279 ~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~  320 (564)
                      .+++++|           ++   .....+.+|.+|+||.++.
T Consensus       296 ~~~v~~L-----------l~---~Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          296 ISIVDAL-----------LD---YGADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             HHHHHHH-----------HH---TTCCTTCCCTTSCCGGGGT
T ss_pred             HHHHHHH-----------HH---cCCCCcccCCCCCCHHHHH
Confidence            9888876           11   2334667889999999875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=9e-27  Score=228.91  Aligned_cols=193  Identities=16%  Similarity=0.085  Sum_probs=147.2

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHH----cCCcccccCCC----CCCCcHHHHHHHhc---h-----HHHHhcCccc---
Q 043183           37 AKRGDTALRIAAAGKYIEFLKELVK----IMEAEDLAKPN----KHGGTALSMLLHLE---G-----RVMMKHNRSI---   97 (564)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~l~~~d----~~G~TpLH~Aa~~~---G-----~~Ll~~~~~~---   97 (564)
                      +..|+||||.||+.|+.+.++.|++    .  +.+++..+    ..|.||||+|+ ..   |     +.|++.+.+.   
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~-~~~~~g~~~~v~~Ll~~g~~~~~~   78 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKAL-LNLSAGRNDTIPILLDIAEKTGNM   78 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHH-TSCBTTBCTHHHHHHHHHHHTTCH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHH-HHhhcCCHHHHHHHHHhcccccch
Confidence            5678999999999999997666665    5  44555444    77999999998 64   5     7888775321   


Q ss_pred             -------ccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccC--------------CCCCcH
Q 043183           98 -------AMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRA--------------GDCETP  156 (564)
Q Consensus        98 -------~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d--------------~~G~Tp  156 (564)
                             ....|..|+||||+|+..|+.+++++|++              .+.+. +.+|              ..|+||
T Consensus        79 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--------------~ga~~-~~~~~~~~~~~~~~~~~~~~g~tp  143 (260)
T 3jxi_A           79 REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE--------------KGADV-HAQARGRFFQPKDEGGYFYFGELP  143 (260)
T ss_dssp             HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHH--------------TTCCT-TCCCEECCCSSSCCCCSCCSCSSH
T ss_pred             HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHh--------------CCCCc-CccccccccCcccccccccCCCCH
Confidence                   23455689999999999999999999864              44443 5555              689999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCC-
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGN-  235 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~-  235 (564)
                      ||+|+..|+.                                ++++.|++.  ...+.+++.+|..|+||||+|+..|+ 
T Consensus       144 L~~A~~~g~~--------------------------------~~v~~Ll~~--~~~ga~~~~~d~~g~TpLh~A~~~~~~  189 (260)
T 3jxi_A          144 LSLAACTNQP--------------------------------HIVHYLTEN--GHKQADLRRQDSRGNTVLHALVAIADN  189 (260)
T ss_dssp             HHHHHHTTCH--------------------------------HHHHHHHHC--SSCCCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred             HHHHHHcCCH--------------------------------HHHHHHHhc--cccCCCCcccCCCCCcHHHHHHHhccC
Confidence            9999999964                                566666441  01567788999999999999999888 


Q ss_pred             --------HHHHHHHHHhCCCcccccccccchHHHh-hcCCchHHHHHhcCCCCccccc
Q 043183          236 --------VGFLLILTREYPNLHISYRRFESSGAHL-QTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       236 --------~~iv~~LL~~~~~~~~~~~r~~~i~n~~-~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                              .+++++|+++|+++....    .+.+.. .+|+||||+|++.|+.+++++|
T Consensus       190 ~~~~~~~~~~~v~~Ll~~ga~~~~~~----~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  244 (260)
T 3jxi_A          190 TRENTKFVTKMYDLLLIKCAKLFPDT----NLEALLNNDGLSPLMMAAKTGKIGIFQHI  244 (260)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHCTTC----CGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCccccccc----chhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence                    799999999988762100    000011 8999999999999999988876

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=1.2e-26  Score=230.85  Aligned_cols=185  Identities=9%  Similarity=0.091  Sum_probs=156.0

Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHH
Q 043183           38 KRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVA  112 (564)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~A  112 (564)
                      ..+.+++|.|+..|+.+.++.+++......++.+|..|.||||+|+ ..|     +.|++.++..++..|..|.||||+|
T Consensus        74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~-~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSV-SHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHH-HCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence            3457889999999999999999987544458899999999999999 999     8899998867889999999999999


Q ss_pred             H-----HcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcC
Q 043183          113 A-----SLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGA  187 (564)
Q Consensus       113 a-----~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~  187 (564)
                      +     ..++.+++++|+              +.+ ......|..|+||||+|+..|+.                     
T Consensus       153 ~~~~~~~~~~~~~v~~Ll--------------~~g-~~~~~~~~~g~tpLh~A~~~g~~---------------------  196 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLF--------------RLG-NINAKASQAGQTALMLAVSHGRV---------------------  196 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHH--------------HHS-CTTCCCTTTCCCHHHHHHHTTCH---------------------
T ss_pred             HHHHhhhhhhHHHHHHHH--------------HcC-CCccccCCCCCCHHHHHHHcCCH---------------------
Confidence            9     445666666664              454 44467888999999999999965                     


Q ss_pred             CcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHH-hCCCcccccccccchHHHhhcC
Q 043183          188 EDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTR-EYPNLHISYRRFESSGAHLQTR  266 (564)
Q Consensus       188 ~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~-~~~~~~~~~~r~~~i~n~~~~G  266 (564)
                                 ++++.|++     .+.+++.+|.+|+||||+|+..|+.+++++|++ .++++....          .+|
T Consensus       197 -----------~~v~~Ll~-----~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d----------~~g  250 (276)
T 4hbd_A          197 -----------DVVKALLA-----CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTD----------RDG  250 (276)
T ss_dssp             -----------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCC----------TTS
T ss_pred             -----------HHHHHHHh-----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcC----------CCC
Confidence                       66776655     356788899999999999999999999999999 788874433          899


Q ss_pred             CchHHHHHhcCCCCccccc
Q 043183          267 NNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       267 ~TpLhlAa~~~~~~~~~~l  285 (564)
                      +||||+|++.|+.+++++|
T Consensus       251 ~TpL~~A~~~g~~~iv~~L  269 (276)
T 4hbd_A          251 STALMVALDAGQSEIASML  269 (276)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHH
Confidence            9999999999999888765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.92  E-value=2.1e-25  Score=208.86  Aligned_cols=157  Identities=17%  Similarity=0.157  Sum_probs=136.1

Q ss_pred             cccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcH
Q 043183           34 IAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLP  108 (564)
Q Consensus        34 ~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~Tp  108 (564)
                      ...|..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|.||
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~  104 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAV-KNNRLGIAEKLLSKGSN-VNTKDFSGKTP  104 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHTCC-TTCCCTTSCCH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHH-HcCCHHHHHHHHHCCCC-CCCCCCCCCcH
Confidence            44688999999999999999999999998  6678889999999999999 998     788888755 57789999999


Q ss_pred             HHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCC
Q 043183          109 IDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAE  188 (564)
Q Consensus       109 Lh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~  188 (564)
                      ||+|+..|+.+++++|++              .+.+ ++.+|.+|.||||+|+..|+.                      
T Consensus       105 L~~A~~~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~~~----------------------  147 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLE--------------HGAN-VNDRNLEGETPLIVASKYGRS----------------------  147 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHH--------------TTCC-SSCCCTTCCCHHHHHHHHTCH----------------------
T ss_pred             HHHHHHcCCHHHHHHHHH--------------CCCC-CCCCCCCCCCHHHHHHHcCCH----------------------
Confidence            999999999999998863              4444 478899999999999999964                      


Q ss_pred             cHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhC
Q 043183          189 DVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREY  246 (564)
Q Consensus       189 h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~  246 (564)
                                ++++.|++     .+.+++.+|..|.||||+|+..|+.+++++|++.+
T Consensus       148 ----------~~v~~Ll~-----~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          148 ----------EIVKKLLE-----LGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             ----------HHHHHHHH-----TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----------HHHHHHHH-----CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence                      66766654     35677888999999999999999999999999864

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.92  E-value=6.9e-25  Score=201.49  Aligned_cols=142  Identities=20%  Similarity=0.144  Sum_probs=124.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHH
Q 043183            5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLH   84 (564)
Q Consensus         5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~   84 (564)
                      +.||||.||..|+.+.++.|++.++..+ ...+..|.||||+|+..|+.++|++|++.  +.+++.+|..|.||||+|+ 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-   77 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLV-NKPDERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLAS-   77 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGG-GCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHH-
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccc-cCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhhcccCCCHHHHHH-
Confidence            4689999999999999999999987755 45688999999999999999999999998  6678889999999999999 


Q ss_pred             hch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHH
Q 043183           85 LEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHA  159 (564)
Q Consensus        85 ~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~  159 (564)
                      ..|     +.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++              .+.+ .+.+|.+|.||||+
T Consensus        78 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~ga~-~~~~~~~g~t~l~~  141 (172)
T 3v30_A           78 TGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLA--------------RGAD-LTTEADSGYTPMDL  141 (172)
T ss_dssp             HTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHH
T ss_pred             HCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-ccccCCCCCCHHHH
Confidence            999     788887755 57889999999999999999999999863              4444 47899999999999


Q ss_pred             HHhCCCC
Q 043183          160 LARKNLT  166 (564)
Q Consensus       160 Aa~~g~~  166 (564)
                      |+..|+.
T Consensus       142 A~~~~~~  148 (172)
T 3v30_A          142 AVALGYR  148 (172)
T ss_dssp             HHHHTCH
T ss_pred             HHHhCcH
Confidence            9999964

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.92  E-value=5e-25  Score=202.46  Aligned_cols=158  Identities=18%  Similarity=0.156  Sum_probs=134.6

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHH
Q 043183           40 GDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAAS  114 (564)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~  114 (564)
                      +.||||.|+..|+.++++.|++.+ +..++.+|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWAS-AFGEIETVRFLLEWGAD-PHILAKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHH-HTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHH
Confidence            468999999999999999999984 4458889999999999999 999     888888755 57889999999999999


Q ss_pred             cCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHH
Q 043183          115 LGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQR  194 (564)
Q Consensus       115 ~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~  194 (564)
                      .|+.+++++|++              .+.+ ++.+|.+|+||||+|+..|+.                            
T Consensus        79 ~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~~~----------------------------  115 (172)
T 3v30_A           79 GGYTDIVGLLLE--------------RDVD-INIYDWNGGTPLLYAVRGNHV----------------------------  115 (172)
T ss_dssp             TTCHHHHHHHHT--------------TTCC-TTCCCTTSCCHHHHHHHTTCH----------------------------
T ss_pred             CCCHHHHHHHHH--------------cCCC-CCCCCCCCCCHHHHHHHcCCH----------------------------
Confidence            999999999863              4433 478899999999999999964                            


Q ss_pred             HhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccc
Q 043183          195 LQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHIS  252 (564)
Q Consensus       195 ~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~  252 (564)
                          ++++.|++     .+.+++.+|..|.||||+|+..|+.+++++|++++++....
T Consensus       116 ----~~v~~Ll~-----~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~  164 (172)
T 3v30_A          116 ----KCVEALLA-----RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQS  164 (172)
T ss_dssp             ----HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             ----HHHHHHHH-----cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence                66666655     35677889999999999999999999999999998876443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.92  E-value=3.8e-25  Score=200.93  Aligned_cols=158  Identities=18%  Similarity=0.133  Sum_probs=93.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHH
Q 043183            5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLH   84 (564)
Q Consensus         5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~   84 (564)
                      ..||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+. |+.+++++|++.  +.+++.              
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~--------------   65 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTALQVMKL-GNPEIARRLLLR--GANPDL--------------   65 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCT--TCCCTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTC--------------
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCc--cccCccCccHHHHHHc-CcHHHHHHHHHc--CCCCCC--------------
Confidence            345555555555555555555544331  2234555555555555 555555555554  333444              


Q ss_pred             hchHHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCC
Q 043183           85 LEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKN  164 (564)
Q Consensus        85 ~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g  164 (564)
                                      +|..|.||||+|+..|+.+++++|++              .+.+ ++.+|.+|+||||+|+..|
T Consensus        66 ----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~  114 (162)
T 1ihb_A           66 ----------------KDRTGFAVIHDAARAGFLDTLQTLLE--------------FQAD-VNIEDNEGNLPLHLAAKEG  114 (162)
T ss_dssp             ----------------CCTTSCCHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             ----------------CCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-CCCcCCCCCCHHHHHHHcC
Confidence                            44455555555555566666666642              3333 3566777777777777776


Q ss_pred             CCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHH
Q 043183          165 LTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTR  244 (564)
Q Consensus       165 ~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~  244 (564)
                      +.                                ++++.|++.    ....++.+|..|.||||+|+..|+.+++++|++
T Consensus       115 ~~--------------------------------~~v~~Ll~~----g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A          115 HL--------------------------------RVVEFLVKH----TASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             CH--------------------------------HHHHHHHHH----SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CH--------------------------------HHHHHHHHc----cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            43                                455555432    222346677788889999999999999999998


Q ss_pred             hCCC
Q 043183          245 EYPN  248 (564)
Q Consensus       245 ~~~~  248 (564)
                      +|+|
T Consensus       159 ~GAd  162 (162)
T 1ihb_A          159 NGAG  162 (162)
T ss_dssp             TC--
T ss_pred             hCCC
Confidence            8865

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=7.1e-25  Score=200.39  Aligned_cols=160  Identities=19%  Similarity=0.089  Sum_probs=104.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      +|.||||.||..|+.++++.|++.+.. + ...|..|.||||+|+..|+.+++++|++.  +.+++..|..|.||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-I-NHTDEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-c-CCCCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHH
Confidence            467777777777777777777776544 2 33566777777777777777777777776  4445555555555555555


Q ss_pred             HhchHHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhC
Q 043183           84 HLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARK  163 (564)
Q Consensus        84 ~~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~  163 (564)
                                                    ..|+.+++++|++              .+.+. +.+|.+|.||||+|+..
T Consensus        78 ------------------------------~~~~~~~v~~Ll~--------------~g~~~-~~~~~~g~t~L~~A~~~  112 (167)
T 3v31_A           78 ------------------------------SKGYTDIVKMLLD--------------CGVDV-NEYDWNGGTPLLYAVHG  112 (167)
T ss_dssp             ------------------------------HHTCHHHHHHHHH--------------HTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             ------------------------------HcCCHHHHHHHHH--------------CCCCC-CcCCCCCCCHHHHHHHc
Confidence                                          4556666666642              33333 55667777777777777


Q ss_pred             CCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHH
Q 043183          164 NLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILT  243 (564)
Q Consensus       164 g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL  243 (564)
                      |+.                                ++++.|++     .+.+++.+|..|.||||+|+..|+.+++++|+
T Consensus       113 ~~~--------------------------------~~v~~Ll~-----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A          113 NHV--------------------------------KCVKMLLE-----SGADPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             TCH--------------------------------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCH--------------------------------HHHHHHHH-----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            643                                45555543     34455667777888888888888888888888


Q ss_pred             HhCCCc
Q 043183          244 REYPNL  249 (564)
Q Consensus       244 ~~~~~~  249 (564)
                      +++++.
T Consensus       156 ~~~~~~  161 (167)
T 3v31_A          156 SHLLKL  161 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.91  E-value=5.1e-24  Score=194.66  Aligned_cols=119  Identities=18%  Similarity=0.267  Sum_probs=103.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|+||||.|+..|+.++++.|++.+.+.  ...+..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus        33 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~  108 (167)
T 3v31_A           33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADP--QLLGKGRESALSLACSKGYTDIVKMLLDC--GVDVNEYDWNGGTPLLY  108 (167)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCC--CCcCCCCCcHHHHHHHcCCHHHHHHHHHC--CCCCCcCCCCCCCHHHH
Confidence            567999999999999999999999987653  44688999999999999999999999998  66788899999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      |+ ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++
T Consensus       109 A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A          109 AV-HGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HH-HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            99 888     777777654 57788889999999999999998888864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=1.6e-26  Score=223.30  Aligned_cols=196  Identities=15%  Similarity=0.105  Sum_probs=147.4

Q ss_pred             HHHHHHhCccc-cccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcC
Q 043183           21 AKSIYDVYEGE-IGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHN   94 (564)
Q Consensus        21 v~~Ll~~~~~~-l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~   94 (564)
                      ++.|++++... .....+.+|.||||+|+..|+.++|++|++.  +.+++.+|..|.||||+|+ ..|     +.|++.+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~-~~g~~~~v~~Ll~~g   77 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAI-CGANYSIVDFLITAG   77 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHCC
Confidence            35667665432 1234567788999999999999999999998  5678889999999999999 898     8888887


Q ss_pred             cccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCcccccc-CCCCCcHHHHH--HhCCCCCcccc
Q 043183           95 RSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLR-AGDCETPLHAL--ARKNLTSSNFI  171 (564)
Q Consensus        95 ~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~-d~~G~TpLh~A--a~~g~~~~~f~  171 (564)
                      .+ ++.+|..|+||||+|+..|+.+++++|++              .+.+. +.. |.+|+||||+|  +..|+.     
T Consensus        78 a~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~--------------~ga~~-~~~~~~~g~tpL~~A~a~~~~~~-----  136 (229)
T 2vge_A           78 AN-VNSPDSHGWTPLHCAASCNDTVICMALVQ--------------HGAAI-FATTLSDGATAFEKCDPYREGYA-----  136 (229)
T ss_dssp             CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHT--------------TTCCT-TCCCSSTTCCTGGGCCTTSTTHH-----
T ss_pred             CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCCc-ccccCCCCCCHHHHHHHHhcChH-----
Confidence            54 57889999999999999999999998853              55555 445 47999999999  777743     


Q ss_pred             cccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcc-
Q 043183          172 NQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLH-  250 (564)
Q Consensus       172 ~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~-  250 (564)
                                                 ++++.|++     .+.+++.+|..|.||+|.++..+..   ++|++.++++. 
T Consensus       137 ---------------------------~~v~~Ll~-----~ga~~~~~~~~~~~~l~~~~~~~~~---~~ll~~ga~~~~  181 (229)
T 2vge_A          137 ---------------------------DCATYLAD-----VEQSMGLMNSGAVYALWDYSAEFGD---ELSFREGESVTV  181 (229)
T ss_dssp             ---------------------------HHHHHHHH-----HHHHTTTSGGGEEEESSCBCCSSTT---BCCBCTTCEEEE
T ss_pred             ---------------------------HHHHHHHH-----cCCCcccccCCchHHHHHHhhcccc---ccCccccccccc
Confidence                                       66666655     3567788889999999976665543   56778877741 


Q ss_pred             cccccccchHHHhhcCCchHHHHHhcCCCCcccc
Q 043183          251 ISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNI  284 (564)
Q Consensus       251 ~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~  284 (564)
                      ...+         .+|+||||+|++.|+.++++.
T Consensus       182 ~~~d---------~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          182 LRRD---------GPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             EESS---------CTTCSSEEEEEETTEEEEEEG
T ss_pred             cccC---------CCcccHHHHHHHcCCcceeeh
Confidence            1111         779999999999999988764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.91  E-value=3.8e-24  Score=200.32  Aligned_cols=144  Identities=15%  Similarity=0.128  Sum_probs=127.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|+||||.|+..|+.++++.|++.+.+.  ...+..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGMENAIDKLVENFDKL--EDKDIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             CTTCCCHHHHHHHHTCGGGHHHHHHHHCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhcccc--ccccccCccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHH
Confidence            567999999999999999999999987653  44688899999999999999999999998  56788999999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      |+ ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++              .+.+ ++.+|.+|.||
T Consensus       108 A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~ga~-~~~~~~~g~t~  170 (192)
T 2rfm_A          108 SI-IFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLE--------------LGAD-ISARDLTGLTA  170 (192)
T ss_dssp             HH-HHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCBCTTSCBH
T ss_pred             HH-HcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------CCCC-CCCcCCCCCCH
Confidence            99 888     788887755 57889999999999999999999999863              4444 47889999999


Q ss_pred             HHHHHhCCCC
Q 043183          157 LHALARKNLT  166 (564)
Q Consensus       157 Lh~Aa~~g~~  166 (564)
                      ||+|+..|+.
T Consensus       171 l~~A~~~~~~  180 (192)
T 2rfm_A          171 EASARIFGRQ  180 (192)
T ss_dssp             HHHHHHTTCH
T ss_pred             HHHHHHhCcH
Confidence            9999999964

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.91  E-value=3.7e-24  Score=196.28  Aligned_cols=153  Identities=20%  Similarity=0.214  Sum_probs=102.4

Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHH
Q 043183           38 KRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVA  112 (564)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~A  112 (564)
                      ..+.||||.||+.|+.++|++|++.  +.+++.+|..|.||||+|+ ..|     +.|++.+.+ ++..|..|.||||+|
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAA-FNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLA   87 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHH
Confidence            4455666666666666666666665  3455556666666666666 555     555555433 355566677777777


Q ss_pred             HHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHH
Q 043183          113 ASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEV  192 (564)
Q Consensus       113 a~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v  192 (564)
                      +..|+.+++++|++              .+.+ .+.+|.+|+||||+|+..|+.                          
T Consensus        88 ~~~~~~~~~~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~~~--------------------------  126 (169)
T 2y1l_E           88 ALFGHLEIVEVLLK--------------NGAD-VNANDMEGHTPLHLAAMFGHL--------------------------  126 (169)
T ss_dssp             HHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTTCH--------------------------
T ss_pred             HHcCCHHHHHHHHH--------------cCCC-CCCCCCCCCCHHHHHHHcCCH--------------------------
Confidence            77777778887753              3333 366788888888888888754                          


Q ss_pred             HHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhC
Q 043183          193 QRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREY  246 (564)
Q Consensus       193 ~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~  246 (564)
                            ++++.|++     .+.+++.+|..|.||||+|+..|+.+++++|++.|
T Consensus       127 ------~~v~~Ll~-----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          127 ------EIVEVLLK-----NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             ------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             ------HHHHHHHH-----cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence                  55666554     34556777888899999999999999999888754

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=6.2e-27  Score=226.29  Aligned_cols=189  Identities=15%  Similarity=0.146  Sum_probs=155.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      +.++.||||.||..|+.++++.|++.+.+ + ...|..|.||||+||..|+.++|++|++.  +.+++.+|..|.||||+
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~~n~~d~~g~tpLh~   93 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVKEMND-P-SQPNEEGITALHNAICGANYSIVDFLITA--GANVNSPDSHGWTPLHC   93 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHHSSC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHhcCCC-C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence            34678999999999999999999998775 3 44688999999999999999999999998  67889999999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHH--HHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCC
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVA--ASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCE  154 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~A--a~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~  154 (564)
                      |+ ..|     +.|++.+.+.....|.+|+||||+|  +..|+.+++++|++              .+.+ ++..|..|.
T Consensus        94 A~-~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~--------------~ga~-~~~~~~~~~  157 (229)
T 2vge_A           94 AA-SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD--------------VEQS-MGLMNSGAV  157 (229)
T ss_dssp             HH-HTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH--------------HHHH-TTTSGGGEE
T ss_pred             HH-HcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHH--------------cCCC-cccccCCch
Confidence            99 999     8888888765444457999999999  99999999999864              3333 366788999


Q ss_pred             cHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhh--HhhhhcCCchHHHHHHH
Q 043183          155 TPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSE--ISRLISKPGALIFDAAK  232 (564)
Q Consensus       155 TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~--~~~~d~~G~TpLh~Aa~  232 (564)
                      ||+|.++.....                                       + ++...+.+  ++.+|..|+||||+|+.
T Consensus       158 ~~l~~~~~~~~~---------------------------------------~-~ll~~ga~~~~~~~d~~G~TpL~~A~~  197 (229)
T 2vge_A          158 YALWDYSAEFGD---------------------------------------E-LSFREGESVTVLRRDGPEETDWWWAAL  197 (229)
T ss_dssp             EESSCBCCSSTT---------------------------------------B-CCBCTTCEEEEEESSCTTCSSEEEEEE
T ss_pred             HHHHHHhhcccc---------------------------------------c-cCccccccccccccCCCcccHHHHHHH
Confidence            999976665432                                       0 12233444  67889999999999999


Q ss_pred             cCCHHHHHH-HHHhCCCcc
Q 043183          233 QGNVGFLLI-LTREYPNLH  250 (564)
Q Consensus       233 ~g~~~iv~~-LL~~~~~~~  250 (564)
                      +|+.++|+. +++..|.+.
T Consensus       198 ~g~~~~v~~~~l~~~p~~~  216 (229)
T 2vge_A          198 HGQEGYVPRNYFGLFPRVK  216 (229)
T ss_dssp             TTEEEEEEGGGEESSCCCC
T ss_pred             cCCcceeehhhhhhCCCCC
Confidence            999999976 456667663

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.91  E-value=4.6e-24  Score=193.73  Aligned_cols=119  Identities=19%  Similarity=0.240  Sum_probs=107.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|+||||.|+. |+.++++.|++.+.+.  ...+..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus        35 ~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~  109 (162)
T 1ihb_A           35 NGFGRTALQVMKL-GNPEIARRLLLRGANP--DLKDRTGFAVIHDAARAGFLDTLQTLLEF--QADVNIEDNEGNLPLHL  109 (162)
T ss_dssp             CTTSCCHHHHCCS-SCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             CccCccHHHHHHc-CcHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHH
Confidence            5679999999999 9999999999987653  44688999999999999999999999998  57888999999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      |+ ..|     +.|++.+++..+.+|..|.||||+|+..|+.+++++|++
T Consensus       110 A~-~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A          110 AA-KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             HH-HTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HH-HcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            99 888     888888887678889999999999999999999999864

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.91  E-value=4.5e-24  Score=192.60  Aligned_cols=154  Identities=18%  Similarity=0.144  Sum_probs=92.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHH
Q 043183            5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLH   84 (564)
Q Consensus         5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~   84 (564)
                      +.||||.|+..|+.+.++.|++..+... ...|..|.||||+ +..|+.+++++|++.  +.+++.+|..|.||||+|+ 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-   76 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAA-   76 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCc-cccCCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHH-
Confidence            4567777777777777777777632222 3346677777777 777777777777766  4455555555555555555 


Q ss_pred             hchHHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCC
Q 043183           85 LEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKN  164 (564)
Q Consensus        85 ~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g  164 (564)
                                                   ..|+.+++++|++              .+.+ ++.+|.+|+||||+|+..|
T Consensus        77 -----------------------------~~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~  112 (156)
T 1bd8_A           77 -----------------------------RTGFLDTLKVLVE--------------HGAD-VNVPDGTGALPIHLAVQEG  112 (156)
T ss_dssp             -----------------------------HTTCHHHHHHHHH--------------TTCC-SCCCCTTSCCHHHHHHHHT
T ss_pred             -----------------------------HcCcHHHHHHHHH--------------cCCC-CCCcCCCCCcHHHHHHHhC
Confidence                                         4455555555532              3322 2455666666666666665


Q ss_pred             CCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHH
Q 043183          165 LTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTR  244 (564)
Q Consensus       165 ~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~  244 (564)
                      +.                                ++++.|++    .  .+++.+|..|.||||+|+..|+.+++++|++
T Consensus       113 ~~--------------------------------~~v~~Ll~----~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          113 HT--------------------------------AVVSFLAA----E--SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CH--------------------------------HHHHHHHT----T--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             hH--------------------------------HHHHHHHh----c--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            43                                34444432    1  3455566667777777777777777777765


Q ss_pred             h
Q 043183          245 E  245 (564)
Q Consensus       245 ~  245 (564)
                      +
T Consensus       155 ~  155 (156)
T 1bd8_A          155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.90  E-value=9.4e-24  Score=190.53  Aligned_cols=117  Identities=20%  Similarity=0.250  Sum_probs=103.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|.||||. |..|+.++++.|++.+.+.  ...|..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus        33 ~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~  107 (156)
T 1bd8_A           33 NRFGKTALQV-MMFGSTAIALELLKQGASP--NVQDTSGTSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGALPIHL  107 (156)
T ss_dssp             CTTSCCHHHH-SCTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHHHH
T ss_pred             CCCCCcHHHH-HHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHH
Confidence            5679999999 9999999999999987653  44688999999999999999999999998  57788899999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      |+ ..|     +.|++.  ..++.+|.+|.||||+|+..|+.+++++|++
T Consensus       108 A~-~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          108 AV-QEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HH-HHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HH-HhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            99 888     777777  4467889999999999999999999999863

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.90  E-value=1.6e-23  Score=188.66  Aligned_cols=140  Identities=16%  Similarity=0.124  Sum_probs=123.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHH
Q 043183            5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLH   84 (564)
Q Consensus         5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~   84 (564)
                      ..||||.|++.|+.++++.|++.++..  . .+..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+ 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~--~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-   75 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAA-   75 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHH-
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC--C-cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-
Confidence            468999999999999999999998753  2 478899999999999999999999988  6678889999999999999 


Q ss_pred             hch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHH
Q 043183           85 LEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHA  159 (564)
Q Consensus        85 ~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~  159 (564)
                      ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++              .+.+ .+.+|.+|.||||+
T Consensus        76 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~ga~-~~~~~~~g~t~l~~  139 (153)
T 1awc_B           76 SEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK--------------YGAD-VHTQSKFCKTAFDI  139 (153)
T ss_dssp             HHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHH
T ss_pred             HcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-ccccCCCCCCHHHH
Confidence            888     888887755 57889999999999999999999999863              4444 47889999999999


Q ss_pred             HHhCCCC
Q 043183          160 LARKNLT  166 (564)
Q Consensus       160 Aa~~g~~  166 (564)
                      |+..|+.
T Consensus       140 A~~~~~~  146 (153)
T 1awc_B          140 SIDNGNE  146 (153)
T ss_dssp             HHHTTCH
T ss_pred             HHHcCCH
Confidence            9999954

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.90  E-value=2.7e-23  Score=190.55  Aligned_cols=142  Identities=19%  Similarity=0.192  Sum_probs=125.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      .+.++||.||+.|+.++++.|++.+.+.  ...|..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADV--NAEDASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHH
Confidence            4678999999999999999999987653  44688999999999999999999999998  6678889999999999999


Q ss_pred             Hhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHH
Q 043183           84 HLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLH  158 (564)
Q Consensus        84 ~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh  158 (564)
                       ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++              .+.+ .+.+|..|.||||
T Consensus        89 -~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~l~  151 (169)
T 2y1l_E           89 -LFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLK--------------NGAD-VNAQDKFGKTAFD  151 (169)
T ss_dssp             -HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHH
T ss_pred             -HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-CCCcCCCCCCHHH
Confidence             998     888888755 57789999999999999999999999863              4444 4788999999999


Q ss_pred             HHHhCCCC
Q 043183          159 ALARKNLT  166 (564)
Q Consensus       159 ~Aa~~g~~  166 (564)
                      +|+..|+.
T Consensus       152 ~A~~~~~~  159 (169)
T 2y1l_E          152 ISIDNGNE  159 (169)
T ss_dssp             HHHHTTCH
T ss_pred             HHHHhCCH
Confidence            99999964

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.90  E-value=3.2e-24  Score=195.64  Aligned_cols=117  Identities=23%  Similarity=0.229  Sum_probs=70.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183            3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML   82 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A   82 (564)
                      .+|.||||.|++.|+.+.++.|++..+... ...+..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNC-RDIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCc-cccccCCCCHHHHHHHcChHHHHHHHHhc--CCCCCccCCCCCCHHHHH
Confidence            456677777777777777777776554433 33466677777777777777777777776  445566666666666666


Q ss_pred             HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHH
Q 043183           83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICM  124 (564)
Q Consensus        83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~L  124 (564)
                      + ..|     +.|++.+.+ ++.+|..|+||||+|+..|+.+++++|
T Consensus        83 ~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L  127 (165)
T 3twr_A           83 C-SYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLL  127 (165)
T ss_dssp             H-HTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             H-HcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            6 554     444444322 234444455555555555555444444

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.90  E-value=1.9e-23  Score=188.10  Aligned_cols=146  Identities=18%  Similarity=0.144  Sum_probs=124.8

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHH
Q 043183           40 GDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAAS  114 (564)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~  114 (564)
                      ..||||.|+..|+.+++++|++.+  .+++ .|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g--~~~~-~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   76 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANG--APFT-TDWLGTSPLHLAA-QYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHT--CCCC-CCTTCCCHHHHHH-HHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcC--CCCC-cCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence            468999999999999999999984  3443 5889999999999 999     788887755 57789999999999999


Q ss_pred             cCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHH
Q 043183          115 LGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQR  194 (564)
Q Consensus       115 ~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~  194 (564)
                      .|+.+++++|++              .+.+ ++.+|.+|+||||+|+..|+.                            
T Consensus        77 ~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~~~----------------------------  113 (153)
T 1awc_B           77 EGHANIVEVLLK--------------HGAD-VNAKDMLKMTALHWATEHNHQ----------------------------  113 (153)
T ss_dssp             HTCHHHHHHHHT--------------TTCC-TTCCCTTSCCHHHHHHHTTCH----------------------------
T ss_pred             cChHHHHHHHHH--------------cCCC-CCCCCCCCCCHHHHHHHcCCH----------------------------
Confidence            999999999863              4433 478899999999999999964                            


Q ss_pred             HhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHH
Q 043183          195 LQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLIL  242 (564)
Q Consensus       195 ~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~L  242 (564)
                          ++++.|++     .+.+++.+|..|.||||+|+..|+.+++++|
T Consensus       114 ----~~v~~Ll~-----~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          114 ----EVVELLIK-----YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             ----HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ----HHHHHHHH-----cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence                66776655     3557788899999999999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.90  E-value=1.4e-23  Score=191.40  Aligned_cols=122  Identities=19%  Similarity=0.223  Sum_probs=71.0

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHH
Q 043183           37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDV  111 (564)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~  111 (564)
                      |.+|.||||.|++.|+.++++.|++.. +.+.+..|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|+||||+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   81 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAA-GYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHN   81 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHH-HcChHHHHHHHHhcCCC-CCccCCCCCCHHHH
Confidence            445666666666666666666666542 3445556666666666666 666     555555543 35556666666666


Q ss_pred             HHHcCCCchHHHHHH-------------------cccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHh
Q 043183          112 AASLGHKDMPICMVS-------------------MNMLLPDVALQLCRDRPKLATLRAGDCETPLHALAR  162 (564)
Q Consensus       112 Aa~~g~~~iv~~Ll~-------------------~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~  162 (564)
                      |+..|+.+++++|++                   +..++.++++.|++.+.+. +.+|.+|+||||+|+.
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT
T ss_pred             HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc
Confidence            666666666666665                   3344455555555554333 4455555555555444

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.89  E-value=9.1e-26  Score=233.53  Aligned_cols=248  Identities=14%  Similarity=0.093  Sum_probs=148.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccc-cccccCCCCChHHHHHHhcCCHHHHHHHHHcCCc---ccccCCCCCCCcHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGE-IGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEA---EDLAKPNKHGGTAL   79 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~-l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~---~~l~~~d~~G~TpL   79 (564)
                      ++.||||.||+.|+.++|+.|++.+... .....+..|.||||+||..|+.++|++|++.+..   .+++.+  + .|||
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~--~-~TpL  167 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE--N-YHAF  167 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH--H-HHHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC--C-CCHH
Confidence            4679999999999999999999986521 1123456789999999999999999999999532   123323  3 8999


Q ss_pred             HHHHHhch-----HHHHhcCccccc-ccCCCCCcHHHHHH-HcCCCchHHHHHH------------cccCCHHHHHHHHH
Q 043183           80 SMLLHLEG-----RVMMKHNRSIAM-VRDHNQTLPIDVAA-SLGHKDMPICMVS------------MNMLLPDVALQLCR  140 (564)
Q Consensus        80 H~Aa~~~G-----~~Ll~~~~~~~~-~~d~~G~TpLh~Aa-~~g~~~iv~~Ll~------------~~~~~~~i~~~Ll~  140 (564)
                      |+|| ..|     +.|++.+++... ..|..|.||||+|+ ..|+.++|++|++            ...|+.++++.|++
T Consensus       168 h~Aa-~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~~~taL~~Aa~~g~~evv~lL~~  246 (376)
T 2aja_A          168 RLAA-ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR  246 (376)
T ss_dssp             HHHH-HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHH
T ss_pred             HHHH-HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCccchHHHHHHHCCCHHHHHHHHh
Confidence            9999 999     889999876432 36788999999999 9999999999986            44566666666666


Q ss_pred             cCCccccccCCCCCcHHHHHHhCCCCCccccccccc--chHHHHhhhcCCcHHHHHHhHHHHHHHHHHh----hccCChh
Q 043183          141 DRPKLATLRAGDCETPLHALARKNLTSSNFINQNQR--GIFRRCFNLGAEDVEVQRLQALKLVERLCGK----VALLSDS  214 (564)
Q Consensus       141 ~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~--~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~----~l~~~~~  214 (564)
                      .+.+. +..|    +++++|+..|+.+..-......  ..++.++......       ..+.++++...    .+...+ 
T Consensus       247 ~ga~~-~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~-------~~~~~~~Ll~~~~vk~l~~~g-  313 (376)
T 2aja_A          247 HVNRL-KEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV-------LLDDIRFLLSIPGIKALAPTA-  313 (376)
T ss_dssp             HHHHH-HHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGG-------GHHHHHHHHTSTTTGGGSSCC-
T ss_pred             cCccc-cccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhh-------HHHHHHHHHhChhhhhhhccC-
Confidence            65443 2222    3666666666542000000000  0111122221111       12333333221    000111 


Q ss_pred             hHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCcccc
Q 043183          215 EISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNI  284 (564)
Q Consensus       215 ~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~  284 (564)
                         ..++.+.||||+|+..|+.+++++|++.+ .+..            ..|+||+.+|...|..++.++
T Consensus       314 ---~~~n~~~~~L~~A~~~g~~e~v~lLl~~~-~v~~------------~~~~~~~~~~~~~~~~~~~~~  367 (376)
T 2aja_A          314 ---TIPGDANELLRLALRLGNQGACALLLSIP-SVLA------------LTKANNYYINETGGRLDLRAV  367 (376)
T ss_dssp             ---SSTTCCCHHHHHHHHHTCTTHHHHHTTSH-HHHH------------SCC------------------
T ss_pred             ---CCCCCccHHHHHHHHcCcHHHHHHHHcCh-HHHH------------HHHHhccccccccccccHHHH
Confidence               12345689999999999999999999753 2111            789999999999999887654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.89  E-value=1.1e-23  Score=194.93  Aligned_cols=161  Identities=14%  Similarity=0.065  Sum_probs=100.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      .+.++||.||..|+.+.++.|++..+..+ ...+..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDL-NQGDDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccc-cccCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH
Confidence            46677888888888888888887765544 34577778888888888888888888877  4555556666666666666


Q ss_pred             HhchHHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhC
Q 043183           84 HLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARK  163 (564)
Q Consensus        84 ~~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~  163 (564)
                       .                             .|+.+++++|++              .+.+ ++.+|.+|+||||+|+..
T Consensus        81 -~-----------------------------~~~~~~v~~Ll~--------------~g~~-~~~~d~~g~t~L~~A~~~  115 (179)
T 3f6q_A           81 -S-----------------------------HGHRDIVQKLLQ--------------YKAD-INAVNEHGNVPLHYACFW  115 (179)
T ss_dssp             -H-----------------------------TTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             -H-----------------------------cCCHHHHHHHHH--------------cCCC-CCccCCCCCCHHHHHHHc
Confidence             4                             445555555532              3222 245556666666666665


Q ss_pred             CCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHH
Q 043183          164 NLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILT  243 (564)
Q Consensus       164 g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL  243 (564)
                      |+.                                ++++.|++     .+.+++.+|..|.||||+|+..++.+++++|+
T Consensus       116 ~~~--------------------------------~~v~~Ll~-----~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A          116 GQD--------------------------------QVAEDLVA-----NGALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             TCH--------------------------------HHHHHHHH-----TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             CCH--------------------------------HHHHHHHH-----CCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            533                                34444433     23345556666677777777777777777777


Q ss_pred             HhCCCc
Q 043183          244 REYPNL  249 (564)
Q Consensus       244 ~~~~~~  249 (564)
                      +.++++
T Consensus       159 ~~g~~~  164 (179)
T 3f6q_A          159 KMGQNL  164 (179)
T ss_dssp             HTTCCC
T ss_pred             HhhcCc
Confidence            777766

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.89  E-value=3.6e-23  Score=191.48  Aligned_cols=118  Identities=16%  Similarity=0.146  Sum_probs=101.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|.||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus        36 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~  111 (179)
T 3f6q_A           36 DDHGFSPLHWACREGRSAVVEMLIMRGARI--NVMNRGDDTPLHLAASHGHRDIVQKLLQY--KADINAVNEHGNVPLHY  111 (179)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHH
Confidence            567999999999999999999999997653  44688999999999999999999999998  66788899999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMV  125 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll  125 (564)
                      |+ ..|     +.|++.+.+ ++.+|..|.||||+|+..++.+++++|+
T Consensus       112 A~-~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A          112 AC-FWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             HH-HTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             HH-HcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            99 887     777777654 5777888888888888888777777764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.88  E-value=3e-23  Score=201.53  Aligned_cols=212  Identities=12%  Similarity=0.018  Sum_probs=129.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      +..|.||||.|++.|+.+.++.|++.+.+.  . .+..|.||||.|+..|+.++|++|++.  +.+++.+|..|.||||+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~--~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~   76 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV--K-FNPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHN   76 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc--c-cCchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHH
Confidence            457999999999999999999999987663  1 357889999999999999999999988  55889999999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCC-c
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCE-T  155 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~-T  155 (564)
                      |+ ..|     +.|++.+.+ ++.+|..|+||||+|+..|+.+++++|+              +.+.+. +.+|..|. |
T Consensus        77 A~-~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll--------------~~ga~~-~~~~~~~~~t  139 (239)
T 1ycs_B           77 AV-CAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLV--------------ESGAAV-FAMTYSDMQT  139 (239)
T ss_dssp             HH-HHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHH--------------HTTCCT-TCCCSSSCCC
T ss_pred             HH-HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHH--------------HcCCCc-ceecCCCCcc
Confidence            99 999     888888755 5888999999999999999999999985              355555 66666665 9


Q ss_pred             HHHHH--HhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChh----hHhhhhcCCchHHHH
Q 043183          156 PLHAL--ARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDS----EISRLISKPGALIFD  229 (564)
Q Consensus       156 pLh~A--a~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~----~~~~~d~~G~TpLh~  229 (564)
                      |||+|  +..|+.                                ++++.|++.....+..    .....|..|.+|+++
T Consensus       140 ~l~~a~~~~~g~~--------------------------------~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eL  187 (239)
T 1ycs_B          140 AADKCEEMEEGYT--------------------------------QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL  187 (239)
T ss_dssp             HHHHCCSSSTTCC--------------------------------CHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBC
T ss_pred             hHHHHHHhhhccH--------------------------------HHHHHHHHhhhcccccccceEEEEeccCCCCCCcc
Confidence            99999  666755                                4566665543222211    111236778999999


Q ss_pred             HHHcCCHHHHHHHHHhCCCc--ccccccccchHHHh-hcCCchHHHHHhc
Q 043183          230 AAKQGNVGFLLILTREYPNL--HISYRRFESSGAHL-QTRNNILHLAAML  276 (564)
Q Consensus       230 Aa~~g~~~iv~~LL~~~~~~--~~~~~r~~~i~n~~-~~G~TpLhlAa~~  276 (564)
                      |.+.|.  +++.|.+.+.+.  .+..       ..- ..|.+|.++....
T Consensus       188 a~~~G~--~i~vl~~~~~~~~~Ww~~-------~~~~~~G~~P~~yv~~~  228 (239)
T 1ycs_B          188 PMKEGD--CMTIIHREDEDEIEWWWA-------RLNDKEGYVPRNLLGLY  228 (239)
T ss_dssp             CBCSSC--EEEECCCCTTSCSSEEEE-------EETTEEEEEEGGGEECC
T ss_pred             cccCCC--EEEEEEecCCCCCCEEEE-------EECCcEEEeehHHeeEC
Confidence            998887  445554444331  1100       000 5677777775544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.88  E-value=5.7e-24  Score=206.67  Aligned_cols=188  Identities=15%  Similarity=0.049  Sum_probs=119.9

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHH
Q 043183           37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDV  111 (564)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~  111 (564)
                      +..|.||||.|++.|+.++++.|++.  +.+++. +..|.||||.|+ ..|     +.|++.+. .++.+|..|+||||+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~--g~~~~~-~~~~~t~L~~A~-~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~   76 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAH--GMRVKF-NPLPLALLLDSS-LEGEFDLVQRIIYEVD-DPSLPNDEGITALHN   76 (239)
T ss_dssp             --------------------------------------CHHHHHHHH-HHTCHHHHHHHTSTTS-SCCCCCTTSCCHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhcc--CCCccc-CchhhHHHHHHH-HcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHH
Confidence            34699999999999999999999998  445553 477899999999 999     77888876 468889999999999


Q ss_pred             HHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHH
Q 043183          112 AASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVE  191 (564)
Q Consensus       112 Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~  191 (564)
                      ||..|+.+++++|++              .+.+ ++.+|.+|+||||+|+..|+.                         
T Consensus        77 A~~~g~~~~v~~Ll~--------------~ga~-~~~~d~~g~tpL~~A~~~~~~-------------------------  116 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQ--------------FGVN-VNAADSDGWTPLHCAASCNNV-------------------------  116 (239)
T ss_dssp             HHHHTCHHHHHHHHH--------------HTCC-TTCCCTTCCCHHHHHHHTTCH-------------------------
T ss_pred             HHHcCCHHHHHHHHH--------------cCCC-CCccCCCCCCHHHHHHHcCCH-------------------------
Confidence            999999999999863              5444 488999999999999999964                         


Q ss_pred             HHHHhHHHHHHHHHHhhccCChhhHhhhhcCCc-hHHHHH--HHcCCHHHHHHHHHhCCCcccccccccchHHHh-hcCC
Q 043183          192 VQRLQALKLVERLCGKVALLSDSEISRLISKPG-ALIFDA--AKQGNVGFLLILTREYPNLHISYRRFESSGAHL-QTRN  267 (564)
Q Consensus       192 v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~-TpLh~A--a~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~-~~G~  267 (564)
                             ++++.|++     .+.+++.+|..|. ||||+|  +..|+.+++++|++++++.........  ..+. ..|.
T Consensus       117 -------~~v~~Ll~-----~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~--~al~d~~~~  182 (239)
T 1ycs_B          117 -------QVCKFLVE-----SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVI--YALWDYEPQ  182 (239)
T ss_dssp             -------HHHHHHHH-----TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEE--EESSCBCCS
T ss_pred             -------HHHHHHHH-----cCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceE--EEEeccCCC
Confidence                   56666655     3567777887777 999999  889999999999998877633210000  0011 6789


Q ss_pred             chHHHHHhcCCCCccccc
Q 043183          268 NILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       268 TpLhlAa~~~~~~~~~~l  285 (564)
                      ||+|+|.+.|.  +++++
T Consensus       183 ~~~eLa~~~G~--~i~vl  198 (239)
T 1ycs_B          183 NDDELPMKEGD--CMTII  198 (239)
T ss_dssp             STTBCCBCSSC--EEEEC
T ss_pred             CCCcccccCCC--EEEEE
Confidence            99999988886  45554

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.87  E-value=3.2e-22  Score=186.60  Aligned_cols=168  Identities=11%  Similarity=-0.003  Sum_probs=128.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCH----HHHHHHHHcCCcccccCCCCCCCcHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYI----EFLKELVKIMEAEDLAKPNKHGGTAL   79 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~----~iv~~Ll~~~~~~~l~~~d~~G~TpL   79 (564)
                      +++++||.||+.|+.+.++.+++.+....   .+..|.||||+|+..|+.    +++++|++.  +.+++.+|..|.|||
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~~~~---~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpL   79 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKGYEDK---ESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTLF   79 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHSSSCH---HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCTH
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcCcccc---cccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcHH
Confidence            57899999999999999999998876532   236799999999999985    599999998  678888899999999


Q ss_pred             HHHHHhchHHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCC-cHHH
Q 043183           80 SMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCE-TPLH  158 (564)
Q Consensus        80 H~Aa~~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~-TpLh  158 (564)
                      |+|+ ..|      .++.                 .+..+++++|              ++.+.+. +.+|.+|+ ||||
T Consensus        80 h~a~-~~~------~~~~-----------------~~~~~iv~~L--------------l~~Gadi-n~~d~~g~ttpLh  120 (186)
T 3t8k_A           80 FPLF-QGG------GNDI-----------------TGTTELCKIF--------------LEKGADI-TALYKPYKIVVFK  120 (186)
T ss_dssp             HHHH-HHC------TTCH-----------------HHHHHHHHHH--------------HHTTCCS-SSCBGGGTBCTTG
T ss_pred             HHHH-HcC------Ccch-----------------hhHHHHHHHH--------------HHCCCCC-CccCCCcCchHHH
Confidence            9988 433      0000                 0112455555              5565554 88999999 9999


Q ss_pred             HHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHH
Q 043183          159 ALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGF  238 (564)
Q Consensus       159 ~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~i  238 (564)
                      +|+..+..+                           ....++++.|    +...+.+++.+|..|.||||+|++.|+.++
T Consensus       121 ~A~~~~~~~---------------------------~~~~~iv~~L----l~~~gad~~~~d~~G~TpL~~A~~~~~~~~  169 (186)
T 3t8k_A          121 NIFNYFVDE---------------------------NEMIPLYKLI----FSQSGLQLLIKDKWGLTALEFVKRCQKPIA  169 (186)
T ss_dssp             GGGGCCSCH---------------------------HHHHHHHHHH----HTSTTCCTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred             HHHHcCCCh---------------------------hhHHHHHHHH----HHhcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence            999966430                           0112455544    333678899999999999999999999999


Q ss_pred             HHHHHHhC
Q 043183          239 LLILTREY  246 (564)
Q Consensus       239 v~~LL~~~  246 (564)
                      |++|++..
T Consensus       170 v~~L~~~~  177 (186)
T 3t8k_A          170 LKMMEDYI  177 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.85  E-value=3.2e-23  Score=214.42  Aligned_cols=193  Identities=12%  Similarity=0.064  Sum_probs=146.9

Q ss_pred             cHHHHHHH-cCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCccc-ccCCCCCCCcHHHHHHH
Q 043183            7 LQTYRAAL-NGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAED-LAKPNKHGGTALSMLLH   84 (564)
Q Consensus         7 t~Lh~Aa~-~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~-l~~~d~~G~TpLH~Aa~   84 (564)
                      ++++.|+. .++.+.++.+++++         .++.||||+||+.|+.++|++|++.+.+.. .+..|..|.||||+|| 
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g---------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa-  136 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKG---------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA-  136 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHT---------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH-
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcC---------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH-
Confidence            45666655 46667777776554         345699999999999999999999854221 2345667899999999 


Q ss_pred             hch-----HHHHhcCccc--ccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccc--cCCCCCc
Q 043183           85 LEG-----RVMMKHNRSI--AMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATL--RAGDCET  155 (564)
Q Consensus        85 ~~G-----~~Ll~~~~~~--~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~--~d~~G~T  155 (564)
                      ..|     +.|++.+++.  .+..+.+ .||||+||..|+.++|++|++              .+++. +.  .|.+|.|
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~--------------~ga~~-~~~~~d~~g~T  200 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCE--------------LAPTE-ATAMIQAENYY  200 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHH--------------SCGGG-HHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHH--------------cCCcc-chhccCCCCCC
Confidence            999     8899988631  1222223 999999999999999999864              54443 33  7888999


Q ss_pred             HHHHHH-hCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcC
Q 043183          156 PLHALA-RKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQG  234 (564)
Q Consensus       156 pLh~Aa-~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g  234 (564)
                      |||+|+ ..|+.                                ++++.|++     .+.       .|.||||+|+.+|
T Consensus       201 pL~~Aa~~~G~~--------------------------------eiv~~Ll~-----~ga-------~~~taL~~Aa~~g  236 (376)
T 2aja_A          201 AFRWAAVGRGHH--------------------------------NVINFLLD-----CPV-------MLAYAEIHEFEYG  236 (376)
T ss_dssp             HHHHHHSTTCCH--------------------------------HHHHHHTT-----SHH-------HHHHHHHCTTTTT
T ss_pred             HHHHHHHHCCCH--------------------------------HHHHHHHh-----CCC-------ccchHHHHHHHCC
Confidence            999999 99954                                56666533     332       2699999999999


Q ss_pred             CHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccc
Q 043183          235 NVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLN  283 (564)
Q Consensus       235 ~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~  283 (564)
                      +.+++++|+++++++              +...++++.|+..|+.++++
T Consensus       237 ~~evv~lL~~~ga~~--------------~~~~~~l~~A~~~g~~~vv~  271 (376)
T 2aja_A          237 EKYVNPFIARHVNRL--------------KEMHDAFKLSNPDGVFDLVT  271 (376)
T ss_dssp             TTTHHHHHHHHHHHH--------------HHHHTTTTTTSSSSCCCCSS
T ss_pred             CHHHHHHHHhcCccc--------------ccccHHHHHHHHCCChhhhc
Confidence            999999999998876              55668999999999988765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.84  E-value=2.9e-21  Score=174.48  Aligned_cols=138  Identities=15%  Similarity=0.089  Sum_probs=105.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCc-HHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGT-ALS   80 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~T-pLH   80 (564)
                      +..|.||||.|++.|+.++++.|++.+.+ + ...|..|.||||+|+ .|+.+++++|++.  +.+++.+|..|.| |||
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~--g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGAN-P-NAPNSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRPVH   83 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCC-T-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCC-C-CCCCCCCCCHHHHHH-cCCHHHHHHHHHc--CCCCCCcCCCCCcHHHH
Confidence            35789999999999999999999998765 3 446889999999995 9999999999998  6788999999999 999


Q ss_pred             HHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCc
Q 043183           81 MLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCET  155 (564)
Q Consensus        81 ~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~T  155 (564)
                      +|+ ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++              . +...+.+|..|.|
T Consensus        84 ~A~-~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~--------------~-ga~~~~~~~~g~t  146 (156)
T 1bi7_B           84 DAA-REGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA--------------A-AGGTRGSNHARID  146 (156)
T ss_dssp             HHH-HHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS--------------C-C------------
T ss_pred             HHH-HCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHH--------------c-CCCCCccCcCcCc
Confidence            999 998     888888754 57889999999999999999999999863              4 3444788999999


Q ss_pred             HHHHHH
Q 043183          156 PLHALA  161 (564)
Q Consensus       156 pLh~Aa  161 (564)
                      |.+-+.
T Consensus       147 ~~~~~~  152 (156)
T 1bi7_B          147 AAEGPS  152 (156)
T ss_dssp             ------
T ss_pred             ccccCC
Confidence            988554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.83  E-value=1.2e-20  Score=166.39  Aligned_cols=118  Identities=16%  Similarity=0.162  Sum_probs=106.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCC-CCcHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKH-GGTALS   80 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~-G~TpLH   80 (564)
                      |..|.||||.|++.|+.++++.|++.+.+ + ...|..|.||||+|+. |+.+++++|++.  +.+++.+|.. |.||||
T Consensus         9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~   83 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQVETVRQLLEAGAD-P-NALNRFGRRPIQVMMM-GSAQVAELLLLH--GAEPNCADPATLTRPVH   83 (136)
T ss_dssp             CCCCSCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTCCTTTTTSTT-SCHHHHHHHHHH--TCCSSCCBTTTTBCHHH
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHcCCC-c-CCcCCCCCCHHHHHHc-CCHHHHHHHHHC--CCCCCCcCCCCCCCHHH
Confidence            56899999999999999999999998765 3 4468899999999999 999999999998  6688899999 999999


Q ss_pred             HHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           81 MLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        81 ~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      +|+ ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++
T Consensus        84 ~A~-~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~  132 (136)
T 1d9s_A           84 DAA-REGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHA  132 (136)
T ss_dssp             HHH-HHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHH-HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999 998     888888755 57889999999999999999999999974

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.83  E-value=2.2e-20  Score=164.54  Aligned_cols=118  Identities=20%  Similarity=0.210  Sum_probs=106.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183            3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML   82 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A   82 (564)
                      ..+.||||.||..|+.++++.|++.+.+.  ...|..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADV--NAKDEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHH
Confidence            35789999999999999999999997663  44688999999999999999999999998  668889999999999999


Q ss_pred             HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      + ..|     +.|++.+.+ ++.+|.+|.||||+|+..|+.+++++|++
T Consensus        88 ~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           88 A-FIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             H-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             H-HcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            9 888     888888755 57889999999999999999999999864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.82  E-value=8.9e-21  Score=184.78  Aligned_cols=138  Identities=17%  Similarity=0.133  Sum_probs=117.2

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccC-CCCCcHHH
Q 043183           37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRD-HNQTLPID  110 (564)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d-~~G~TpLh  110 (564)
                      +.+|.||||+|+..|+.++|+.|++   +.+++.+|..|.||||+|+ ..|     +.|++.+.+. +.+| ..|+||||
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~  116 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADL-DHRDMRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHH-HHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHH-HCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence            4578999999999999999999998   4578889999999999999 898     8888887664 4455 78999999


Q ss_pred             HHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcH
Q 043183          111 VAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDV  190 (564)
Q Consensus       111 ~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~  190 (564)
                      +|+..|+.+++++|++              .+.+ ++.+|.+|+||||+|+..++.                        
T Consensus       117 ~A~~~g~~~~v~~Ll~--------------~ga~-~~~~d~~g~t~l~~A~~~~~~------------------------  157 (244)
T 3ui2_A          117 MAAGYVRPEVVEALVE--------------LGAD-IEVEDERGLTALELAREILKT------------------------  157 (244)
T ss_dssp             HHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTCCCHHHHHHHHHTT------------------------
T ss_pred             HHHHcCCHHHHHHHHH--------------CCCC-CCCCCCCCCcHHHHHHHHHhc------------------------
Confidence            9999999999999863              5444 478999999999999975421                        


Q ss_pred             HHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 043183          191 EVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPN  248 (564)
Q Consensus       191 ~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~  248 (564)
                                                    ..+.||||+|+..|+.+++++|++...+
T Consensus       158 ------------------------------~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          158 ------------------------------TPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             ------------------------------CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             ------------------------------cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence                                          3468999999999999999999987544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.82  E-value=6.7e-21  Score=172.10  Aligned_cols=85  Identities=19%  Similarity=0.289  Sum_probs=51.1

Q ss_pred             cCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch----HHHHhcCcccccccCCCCCc-HHH
Q 043183           36 IAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG----RVMMKHNRSIAMVRDHNQTL-PID  110 (564)
Q Consensus        36 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G----~~Ll~~~~~~~~~~d~~G~T-pLh  110 (564)
                      .+..|.||||+|+..|+.++|++|++.  +.+++.+|..|.||||+|+ ...    +.|++.+.+ ++.+|..|.| |||
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVH   83 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHHH
Confidence            467889999999999999999999987  5567777777777777655 211    333333322 2333444444 444


Q ss_pred             HHHHcCCCchHHHH
Q 043183          111 VAASLGHKDMPICM  124 (564)
Q Consensus       111 ~Aa~~g~~~iv~~L  124 (564)
                      +|+..|+.+++++|
T Consensus        84 ~A~~~~~~~~v~~L   97 (156)
T 1bi7_B           84 DAAREGFLDTLVVL   97 (156)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHCCCHHHHHHH
Confidence            44444444444443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.82  E-value=1.1e-20  Score=175.60  Aligned_cols=135  Identities=17%  Similarity=0.146  Sum_probs=114.9

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccC-CCCCcHHH
Q 043183           37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRD-HNQTLPID  110 (564)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d-~~G~TpLh  110 (564)
                      +.+|.||||+|+..|+.++++.|++   +.+++.+|..|.||||+|+ ..|     +.|++.+.+. +.+| ..|+||||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~-~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~  115 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADL-DHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence            5678999999999999999999998   4578889999999999999 888     8888887664 4555 88999999


Q ss_pred             HHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcH
Q 043183          111 VAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDV  190 (564)
Q Consensus       111 ~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~  190 (564)
                      +|+..|+.+++++|++              .+.+ ++.+|.+|+||||+|++.++.                        
T Consensus       116 ~A~~~~~~~~v~~Ll~--------------~ga~-~~~~d~~g~tpl~~A~~~~~~------------------------  156 (183)
T 3deo_A          116 MAAGYVRPEVVEALVE--------------LGAD-IEVEDERGLTALELAREILKT------------------------  156 (183)
T ss_dssp             HHHHTTCHHHHHHHHH--------------HTCC-TTCCCTTSCCHHHHHHHHHHT------------------------
T ss_pred             HHHhcCcHHHHHHHHH--------------cCCC-CcCCCCCCCCHHHHHHHhccC------------------------
Confidence            9999999999999853              5444 478999999999999986522                        


Q ss_pred             HHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHh
Q 043183          191 EVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTRE  245 (564)
Q Consensus       191 ~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~  245 (564)
                                                    ..+.+||++|+..|+.+++++|.++
T Consensus       157 ------------------------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 ------------------------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             ------------------------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------------------------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence                                          2358999999999999999999764

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.82  E-value=1e-20  Score=166.79  Aligned_cols=129  Identities=16%  Similarity=0.181  Sum_probs=84.5

Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhchHHHHhcCcccccccCCCCCcHHHHHHH
Q 043183           35 AIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAAS  114 (564)
Q Consensus        35 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~  114 (564)
                      ..+..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+                              .
T Consensus         7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~------------------------------~   54 (136)
T 1d9s_A            7 MLGGSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMM------------------------------M   54 (136)
T ss_dssp             CCCCCCSCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTST------------------------------T
T ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHH------------------------------c
Confidence            3567788888888888888888888877  4456666666666666666                              3


Q ss_pred             cCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCC-CCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHH
Q 043183          115 LGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGD-CETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQ  193 (564)
Q Consensus       115 ~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~-G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~  193 (564)
                       |+.+++++|+              +.+.+. +.+|.. |+||||+|+..|+.                           
T Consensus        55 -~~~~~v~~Ll--------------~~g~~~-~~~~~~~g~t~L~~A~~~~~~---------------------------   91 (136)
T 1d9s_A           55 -GSAQVAELLL--------------LHGAEP-NCADPATLTRPVHDAAREGFL---------------------------   91 (136)
T ss_dssp             -SCHHHHHHHH--------------HHTCCS-SCCBTTTTBCHHHHHHHHTCH---------------------------
T ss_pred             -CCHHHHHHHH--------------HCCCCC-CCcCCCCCCCHHHHHHHcCCH---------------------------
Confidence             4555555553              233332 455665 66666666666643                           


Q ss_pred             HHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 043183          194 RLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPN  248 (564)
Q Consensus       194 ~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~  248 (564)
                           ++++.|++     .+.+++.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus        92 -----~~v~~Ll~-----~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           92 -----DTLVVLHR-----AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             -----HHHHHHHH-----TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHH-----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                 44444433     2345566677788888888888888888888887764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.2e-19  Score=156.54  Aligned_cols=117  Identities=26%  Similarity=0.356  Sum_probs=105.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      +|+||||.|++.|+.++++.|++.+.+.  ...+..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC--CCcCCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCcHHHHHH
Confidence            5899999999999999999999987653  44688999999999999999999999998  6678889999999999999


Q ss_pred             Hhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           84 HLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        84 ~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                       ..|     +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++
T Consensus        77 -~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  122 (126)
T 1n0r_A           77 -RNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE  122 (126)
T ss_dssp             -HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             -HcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence             998     888887755 57889999999999999999999999964

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.7e-19  Score=155.61  Aligned_cols=126  Identities=21%  Similarity=0.306  Sum_probs=87.9

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhchHHHHhcCcccccccCCCCCcHHHHHHHcCCC
Q 043183           39 RGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHK  118 (564)
Q Consensus        39 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~  118 (564)
                      +|.||||+|+..|+.+++++|++.  +.+++..|..|.||||+|+                              ..|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~------------------------------~~~~~   48 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA------------------------------RNGHL   48 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHH------------------------------HHTCH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHH------------------------------HcCcH
Confidence            488999999999999999999987  4455555666666666666                              44556


Q ss_pred             chHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHH
Q 043183          119 DMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQAL  198 (564)
Q Consensus       119 ~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~  198 (564)
                      +++++|++              .+.+ .+.+|..|.||||+|+..|+.                                
T Consensus        49 ~~~~~Ll~--------------~g~~-~~~~~~~g~t~l~~A~~~~~~--------------------------------   81 (126)
T 1n0r_A           49 EVVKLLLE--------------AGAD-VNAKDKNGRTPLHLAARNGHL--------------------------------   81 (126)
T ss_dssp             HHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTTCH--------------------------------
T ss_pred             HHHHHHHH--------------cCCC-CcccCCCCCcHHHHHHHcChH--------------------------------
Confidence            66666642              3222 355666777777777776643                                


Q ss_pred             HHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 043183          199 KLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPN  248 (564)
Q Consensus       199 ~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~  248 (564)
                      ++++.|++     .+.+++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        82 ~~~~~Ll~-----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           82 EVVKLLLE-----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHH-----cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            45555543     2345566777888999999999999999999988875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.79  E-value=5.3e-20  Score=162.21  Aligned_cols=124  Identities=15%  Similarity=0.121  Sum_probs=105.3

Q ss_pred             ccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchH
Q 043183          100 VRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIF  179 (564)
Q Consensus       100 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~  179 (564)
                      .+|.+|+||||+|+..|+.+++++|++              .+.+ ++.+|..|+||||+|+..|+.             
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~~~-------------   56 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQ--------------NGSD-PNVKDHAGWTPLHEACNHGHL-------------   56 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHH--------------TTCC-SCCCCTTSCCHHHHHHHTTCH-------------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-CCcCCCCCCCHHHHHHHcCCH-------------
Confidence            678899999999999999999999863              4443 478899999999999999964             


Q ss_pred             HHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccch
Q 043183          180 RRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESS  259 (564)
Q Consensus       180 ~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i  259 (564)
                                         ++++.|++     .+.+++.+|..|+||||+|+..|+.+++++|+++++++....      
T Consensus        57 -------------------~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~------  106 (137)
T 3c5r_A           57 -------------------KVVELLLQ-----HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN------  106 (137)
T ss_dssp             -------------------HHHHHHHH-----TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------
T ss_pred             -------------------HHHHHHHH-----cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC------
Confidence                               56666654     355778889999999999999999999999999999884433      


Q ss_pred             HHHhhcCCchHHHHHhcCCCCccccc
Q 043183          260 GAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       260 ~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                          .+|+||||+|+..+..+++.++
T Consensus       107 ----~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A          107 ----IFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             ----TTSCCGGGGCCCHHHHHHHSCC
T ss_pred             ----CCCCCHHHHHhhccHHHHHhhc
Confidence                8999999999988887777765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.78  E-value=2.2e-19  Score=180.43  Aligned_cols=135  Identities=16%  Similarity=0.175  Sum_probs=110.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCccccccc-----cCCCCChHHHHHHhc---CCHHHHHHHHHcCCcccccCCCCCCCc
Q 043183            6 RLQTYRAALNGDWAVAKSIYDVYEGEIGIA-----IAKRGDTALRIAAAG---KYIEFLKELVKIMEAEDLAKPNKHGGT   77 (564)
Q Consensus         6 ~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~-----~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~l~~~d~~G~T   77 (564)
                      .++||.|+..|+.+.++.|++.+++. +..     .+..|.||||+|+..   |+.+++++|++.  +.+++.+|..|+|
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadvn~~d~~G~T  228 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNT  228 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH--SSCTTCCCTTCCC
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc--CCCCCCCCCCCCC
Confidence            46799999999999999999887663 221     478899999999997   899999999999  6688999999999


Q ss_pred             HHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCC
Q 043183           78 ALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGD  152 (564)
Q Consensus        78 pLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~  152 (564)
                      |||+|+ ..|     +.|++.+.+ ++.+|.+|.||||+|+..|+.+++++|++              .+       ...
T Consensus       229 pLh~A~-~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~--------------~g-------a~~  285 (301)
T 2b0o_E          229 ALHYAA-LYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ--------------AQ-------AGT  285 (301)
T ss_dssp             HHHHHH-HTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHH--------------HH-------HHT
T ss_pred             HHHHHH-HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH--------------hc-------CCC
Confidence            999999 999     888888755 57899999999999999999999999974              21       226


Q ss_pred             CCcHHHHHHhCCCC
Q 043183          153 CETPLHALARKNLT  166 (564)
Q Consensus       153 G~TpLh~Aa~~g~~  166 (564)
                      |.||||+|+..|..
T Consensus       286 g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          286 FAFPLHVDYSWVIS  299 (301)
T ss_dssp             TSSCCC--------
T ss_pred             CCChhHHHHhcCCc
Confidence            89999999998853

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.78  E-value=9.5e-20  Score=160.57  Aligned_cols=117  Identities=12%  Similarity=0.081  Sum_probs=104.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|+||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGSDP--NVKDHAGWTPLHEACNHGHLKVVELLLQH--KALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCGGGCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CcCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCcccCcCCCCCCHHHH
Confidence            678999999999999999999999987653  44688999999999999999999999998  66888999999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICM  124 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~L  124 (564)
                      |+ ..|     +.|++.+.+ ++.+|..|.||||+|+..+..+++++|
T Consensus        83 A~-~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           83 AA-KNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             HH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             HH-HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence            99 999     888888655 588899999999999988877777665

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.78  E-value=6.3e-19  Score=155.18  Aligned_cols=112  Identities=16%  Similarity=0.148  Sum_probs=97.5

Q ss_pred             cCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHH
Q 043183           36 IAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPID  110 (564)
Q Consensus        36 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh  110 (564)
                      ....+.||||+||..|+.+++++|++.  +.+++.+|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|.||||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~   85 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLAT-AHGHLEIVEVLLKNGAD-VNAVDAIGFTPLH   85 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCcCCCCCCCHHH
Confidence            356789999999999999999999998  6678899999999999999 888     888888755 5778999999999


Q ss_pred             HHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCC
Q 043183          111 VAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLT  166 (564)
Q Consensus       111 ~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~  166 (564)
                      +|+..|+.+++++|++              .+.+ .+.+|.+|+||||+|+..|+.
T Consensus        86 ~A~~~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~tpl~~A~~~~~~  126 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLK--------------HGAD-VNAQDKFGKTAFDISIGNGNE  126 (136)
T ss_dssp             HHHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHH--------------cCCC-CcCcCCCCCCHHHHHHHCCCH
Confidence            9999999999999863              4444 478899999999999999964

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.78  E-value=3.6e-19  Score=178.93  Aligned_cols=138  Identities=12%  Similarity=0.047  Sum_probs=104.6

Q ss_pred             CCCCcHHHHHHHhch-----HHHHhcCcccccc-----cCCCCCcHHHHHHHc---CCCchHHHHHHcccCCHHHHHHHH
Q 043183           73 KHGGTALSMLLHLEG-----RVMMKHNRSIAMV-----RDHNQTLPIDVAASL---GHKDMPICMVSMNMLLPDVALQLC  139 (564)
Q Consensus        73 ~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~-----~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~i~~~Ll  139 (564)
                      ..+.++||.|+ ..|     +.+++.+.++...     .|..|+||||+|+..   |+.+++++|+              
T Consensus       149 ~~~~~~L~~A~-~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll--------------  213 (301)
T 2b0o_E          149 TPEPQRLWTAI-CNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII--------------  213 (301)
T ss_dssp             C-CHHHHHHHH-HTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHH--------------
T ss_pred             CchHHHHhhhh-hccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHH--------------
Confidence            33457899999 888     6667777654332     688899999999987   7788888775              


Q ss_pred             HcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhh
Q 043183          140 RDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRL  219 (564)
Q Consensus       140 ~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~  219 (564)
                      +.+.+ ++.+|.+|+||||+|+..|+.                                ++++.|++     .+++++.+
T Consensus       214 ~~gad-vn~~d~~G~TpLh~A~~~g~~--------------------------------~~v~~Ll~-----~gad~~~~  255 (301)
T 2b0o_E          214 QNGGH-LDAKAADGNTALHYAALYNQP--------------------------------DCLKLLLK-----GRALVGTV  255 (301)
T ss_dssp             HHSSC-TTCCCTTCCCHHHHHHHTTCH--------------------------------HHHHHHHH-----TTCCCSCC
T ss_pred             hcCCC-CCCCCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHH-----cCCCCCCc
Confidence            45544 478899999999999999965                                56666654     45678889


Q ss_pred             hcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCC
Q 043183          220 ISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQ  279 (564)
Q Consensus       220 d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~  279 (564)
                      |.+|.||||+|+..|+.+++++|++++++                .|+||||+|++.|+.
T Consensus       256 d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          256 NEAGETALDIARKKHHKECEELLEQAQAG----------------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------------TTSSCCC--------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------------CCCChhHHHHhcCCc
Confidence            99999999999999999999999988644                589999999998874

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.77  E-value=5.3e-19  Score=172.16  Aligned_cols=124  Identities=19%  Similarity=0.169  Sum_probs=107.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCC-CCCCcHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPN-KHGGTALSML   82 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d-~~G~TpLH~A   82 (564)
                      +|.||||.||+.|+.++++.|++ +.+ + ...|..|.||||+||..|+.++|++|++.  +.+++.+| ..|.||||+|
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRD-V-DAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCC-T-TCBCTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCC-C-CCcCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHHH
Confidence            68899999999999999999998 443 3 44688999999999999999999999998  66788888 7899999999


Q ss_pred             HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHH
Q 043183           83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPL  157 (564)
Q Consensus        83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpL  157 (564)
                      + ..|     +.|++.+.+ ++.+|..|.||||+|+..+                                .+..+.|||
T Consensus       119 ~-~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~--------------------------------~~~~~~~~l  164 (244)
T 3ui2_A          119 A-GYVRPEVVEALVELGAD-IEVEDERGLTALELAREIL--------------------------------KTTPKGNPM  164 (244)
T ss_dssp             H-HTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHH--------------------------------TTCCCSSHH
T ss_pred             H-HcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHH--------------------------------hccCCCCHH
Confidence            9 999     888888755 5788999999999998521                                235789999


Q ss_pred             HHHHhCCCC
Q 043183          158 HALARKNLT  166 (564)
Q Consensus       158 h~Aa~~g~~  166 (564)
                      |+|+..|+.
T Consensus       165 ~~a~~~g~~  173 (244)
T 3ui2_A          165 QFGRRIGLE  173 (244)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHcChH
Confidence            999999843

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.77  E-value=3.1e-19  Score=154.23  Aligned_cols=107  Identities=21%  Similarity=0.231  Sum_probs=93.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      +..|.||||.|+..|+.++++.|++.+.+ + ...|..|.||||+|+..|+.+++++|++.  +.+++.+|..|+||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-V-NRTLEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-T-TSCCTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-c-CccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHH
Confidence            45688999999999999999999998765 3 44688999999999999999999999988  67889999999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAAS  114 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~  114 (564)
                      |+ ..|     +.|++.+.+ ++.+|.+|.||||+|+.
T Consensus        80 A~-~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           80 AV-YEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HH-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCC
T ss_pred             HH-HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhCC
Confidence            99 898     888888765 68899999999999953

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.77  E-value=2.4e-19  Score=166.46  Aligned_cols=115  Identities=17%  Similarity=0.127  Sum_probs=97.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCC-CCCCcHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPN-KHGGTALSML   82 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d-~~G~TpLH~A   82 (564)
                      +|.||||.|++.|+.++++.|++ +.+ + ...|..|.||||+|+..|+.+++++|++.  +.+++.+| ..|+||||+|
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRD-V-DAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSC-T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCC-C-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHHH
Confidence            67899999999999999999998 443 3 44688999999999999999999999998  66788788 8999999999


Q ss_pred             HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHH
Q 043183           83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMV  125 (564)
Q Consensus        83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll  125 (564)
                      + ..|     +.|++.+.+ ++.+|.+|.||||+|+..++.+.++.++
T Consensus       118 ~-~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~~l  163 (183)
T 3deo_A          118 A-GYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTPKGNPM  163 (183)
T ss_dssp             H-HTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHTCCCCSHH
T ss_pred             H-hcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccCcccccHH
Confidence            9 998     888888755 5788999999999999866544444333

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.77  E-value=4.1e-19  Score=165.48  Aligned_cols=118  Identities=11%  Similarity=0.034  Sum_probs=103.3

Q ss_pred             CCCCcHHHHHHHcCCH----HHHHHHHHhCccccccccCCCCChHHHHHHhcCC------HHHHHHHHHcCCcccccCCC
Q 043183            3 RSRRLQTYRAALNGDW----AVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKY------IEFLKELVKIMEAEDLAKPN   72 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~----~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~------~~iv~~Ll~~~~~~~l~~~d   72 (564)
                      ..|+||||.|+..|+.    ++++.|++.+.+ + ...|.+|.||||+|+..|+      .+++++|++.  +.+++.+|
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-v-n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~--Gadin~~d  111 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGAD-I-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK--GADITALY  111 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-S-SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT--TCCSSSCB
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-C-CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC--CCCCCccC
Confidence            4699999999999985    589999998876 3 4468999999999999987      6889999998  77899999


Q ss_pred             CCCC-cHHHHHHHhch----------HHHHh-cCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           73 KHGG-TALSMLLHLEG----------RVMMK-HNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        73 ~~G~-TpLH~Aa~~~G----------~~Ll~-~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      ..|. ||||+|+ ..|          +.|++ .+. .++.+|..|.||||+|+..|+.+++++|.+
T Consensus       112 ~~g~ttpLh~A~-~~~~~~~~~~~iv~~Ll~~~ga-d~~~~d~~G~TpL~~A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          112 KPYKIVVFKNIF-NYFVDENEMIPLYKLIFSQSGL-QLLIKDKWGLTALEFVKRCQKPIALKMMED  175 (186)
T ss_dssp             GGGTBCTTGGGG-GCCSCHHHHHHHHHHHHTSTTC-CTTCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred             CCcCchHHHHHH-HcCCChhhHHHHHHHHHHhcCC-CCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999 9999999 843          67777 554 468999999999999999999999999975

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.75  E-value=2.5e-18  Score=148.43  Aligned_cols=109  Identities=17%  Similarity=0.184  Sum_probs=93.3

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHH
Q 043183           37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDV  111 (564)
Q Consensus        37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~  111 (564)
                      +..|+||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|+||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGAD-INAPDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHH-HTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc--CCCcCccCCCCCcHHHHHH-HcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHH
Confidence            56789999999999999999999998  5678899999999999999 999     788887755 67889999999999


Q ss_pred             HHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCC
Q 043183          112 AASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKN  164 (564)
Q Consensus       112 Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g  164 (564)
                      |+..|+.+++++|++              .+.+ .+.+|.+|+||||+|+..+
T Consensus        80 A~~~~~~~~v~~Ll~--------------~ga~-~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLS--------------KGAD-KTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHCCCHH
T ss_pred             HHHcCCHHHHHHHHH--------------cCCC-CCCcCCCCCCHHHHhCCHH
Confidence            999999999998853              5444 4789999999999996543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.74  E-value=9.4e-19  Score=167.50  Aligned_cols=119  Identities=22%  Similarity=0.250  Sum_probs=103.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183            3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML   82 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A   82 (564)
                      .+|.||||.||..|+.++++.|++.+.+ + ...|..|.||||+||..|+.++|++|++. .+.+++.+|..|.||||+|
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDNRVG-V-NGLDKAGSTALYWACHGGHKDIVEMLFTQ-PNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHTTS-TTCCCCCCCTTSCCHHHHH
T ss_pred             cccccccccccccCcHHHHHHHHhCCCC-c-cccCCCCCCHHHHHHHcCCHHHHHHHHcC-CCCCccccCCCCCCHHHHH
Confidence            4689999999999999999999998765 3 44688999999999999999999999987 3567899999999999999


Q ss_pred             HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      + ..|     +.|++.+.+ ++.+|.+|.||||+|+..|+.++++.|++
T Consensus       148 ~-~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~  194 (222)
T 3ehr_A          148 A-WKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQG  194 (222)
T ss_dssp             H-HHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC----
T ss_pred             H-HcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhc
Confidence            9 998     888888755 57899999999999999999999998864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.73  E-value=3.5e-18  Score=169.66  Aligned_cols=121  Identities=10%  Similarity=0.011  Sum_probs=98.4

Q ss_pred             CCcHHHHHHHhch-----HHHHhcCccc-----ccccCCCCCcHHHHHHHc---CCCchHHHHHHcccCCHHHHHHHHHc
Q 043183           75 GGTALSMLLHLEG-----RVMMKHNRSI-----AMVRDHNQTLPIDVAASL---GHKDMPICMVSMNMLLPDVALQLCRD  141 (564)
Q Consensus        75 G~TpLH~Aa~~~G-----~~Ll~~~~~~-----~~~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~i~~~Ll~~  141 (564)
                      ..++||.|+ ..|     +.++..+.+.     .+..|..|+||||+|+..   |+.+++++|+              +.
T Consensus       130 ~l~~l~~a~-~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll--------------~~  194 (278)
T 1dcq_A          130 KLHSLCEAV-KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV--------------QN  194 (278)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH--------------HH
T ss_pred             hhhhhhhHh-hhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHH--------------HC
Confidence            356899999 888     5566766654     344588899999999998   7888888875              45


Q ss_pred             CCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhc
Q 043183          142 RPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLIS  221 (564)
Q Consensus       142 ~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~  221 (564)
                      +.+ ++.+|.+|+||||+|+..|+.                                ++++.|++     .+++++.+|.
T Consensus       195 ga~-in~~d~~g~TpLh~A~~~g~~--------------------------------~~v~~Ll~-----~gad~~~~d~  236 (278)
T 1dcq_A          195 SGN-LDKQTGKGSTALHYCCLTDNA--------------------------------ECLKLLLR-----GKASIEIANE  236 (278)
T ss_dssp             CSC-TTCCCTTCCCHHHHHHHTTCH--------------------------------HHHHHHHH-----TTCCTTCCCT
T ss_pred             CCC-ccccCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHH-----cCCCCCCccC
Confidence            544 478999999999999999964                                56666654     5667889999


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHhCCC
Q 043183          222 KPGALIFDAAKQGNVGFLLILTREYPN  248 (564)
Q Consensus       222 ~G~TpLh~Aa~~g~~~iv~~LL~~~~~  248 (564)
                      +|.||||+|+..|+.+++++|++++++
T Consensus       237 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          237 SGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999998544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.72  E-value=3.1e-18  Score=163.89  Aligned_cols=146  Identities=16%  Similarity=0.112  Sum_probs=114.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCc-------------cccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccc
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYE-------------GEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDL   68 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~-------------~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l   68 (564)
                      ++.+.++.+++.+.|+...+..+.+.+-             .......+.+|.||||+||..|+.++|++|++.  +.++
T Consensus        22 d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~   99 (222)
T 3ehr_A           22 TFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDN--RVGV   99 (222)
T ss_dssp             CCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHT--TCCT
T ss_pred             CcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhC--CCCc
Confidence            4566677777777777544433322110             001122356789999999999999999999997  6678


Q ss_pred             cCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCC
Q 043183           69 AKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRP  143 (564)
Q Consensus        69 ~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~  143 (564)
                      +.+|..|.||||+|+ ..|     +.|++..+..++.+|..|+||||+|+..|+.+++++|++              .+.
T Consensus       100 ~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~--------------~ga  164 (222)
T 3ehr_A          100 NGLDKAGSTALYWAC-HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA--------------KGA  164 (222)
T ss_dssp             TCCCTTSCCHHHHHH-HTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHH--------------HTC
T ss_pred             cccCCCCCCHHHHHH-HcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCC
Confidence            899999999999999 999     788887455678899999999999999999999999864              544


Q ss_pred             ccccccCCCCCcHHHHHHhCCC
Q 043183          144 KLATLRAGDCETPLHALARKNL  165 (564)
Q Consensus       144 ~~~~~~d~~G~TpLh~Aa~~g~  165 (564)
                      + ++.+|.+|.||||+|+..+.
T Consensus       165 ~-~~~~~~~g~t~l~~A~~~~~  185 (222)
T 3ehr_A          165 R-TDLRNIEKKLAFDMATNAAC  185 (222)
T ss_dssp             C-SCCCCTTSCCHHHHCCSHHH
T ss_pred             C-CccccCCCCCHHHHhcchhH
Confidence            4 47899999999999998773

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.71  E-value=2.2e-17  Score=170.08  Aligned_cols=143  Identities=15%  Similarity=0.104  Sum_probs=105.2

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHHhCccccccccC--CCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHH
Q 043183            4 SRRLQTYRAALN-GDWAVAKSIYDVYEGEIGIAIA--KRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALS   80 (564)
Q Consensus         4 ~g~t~Lh~Aa~~-G~~~~v~~Ll~~~~~~l~~~~~--~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH   80 (564)
                      .+.|+||.|+.. |+.++++.|++.+.+.  ...+  ..|.||||+|+..|+.++|++|++.  +.+++.+|..|.||||
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv--n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~--Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADV--NWVNGGQDNATPLIQATAANSLLACEFLLQN--GANVNQADSAGRGPLH  273 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCC--CccccccCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHH
Confidence            456899999999 9999999999987763  2234  7899999999999999999999998  6788999999999999


Q ss_pred             HHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCc
Q 043183           81 MLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCET  155 (564)
Q Consensus        81 ~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~T  155 (564)
                      +|+ ..|     +.|++.+.+ ++.+|.+|.||||+|+..|+.+++++|+..            ..........+..+.|
T Consensus       274 ~A~-~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~------------~~~~~~~~~~~~~~~t  339 (368)
T 3jue_A          274 HAT-ILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLA------------KMREAEAAQGQAGDET  339 (368)
T ss_dssp             HHH-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH------------HC--------------
T ss_pred             HHH-HcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc------------CCCcccccccCCCCCC
Confidence            999 998     888888755 588899999999999999999999999751            1122222455677889


Q ss_pred             HHHHHHhCC
Q 043183          156 PLHALARKN  164 (564)
Q Consensus       156 pLh~Aa~~g  164 (564)
                      +++.+....
T Consensus       340 ~l~i~~~~~  348 (368)
T 3jue_A          340 YLDIFRDFS  348 (368)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
Confidence            999887654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.71  E-value=1.7e-17  Score=164.74  Aligned_cols=117  Identities=19%  Similarity=0.188  Sum_probs=104.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCcccc----ccccCCCCChHHHHHHhc---CCHHHHHHHHHcCCcccccCCCCCCCcH
Q 043183            6 RLQTYRAALNGDWAVAKSIYDVYEGEI----GIAIAKRGDTALRIAAAG---KYIEFLKELVKIMEAEDLAKPNKHGGTA   78 (564)
Q Consensus         6 ~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l----~~~~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~l~~~d~~G~Tp   78 (564)
                      .++||.|+..|+.+.++.+++.+.+..    ....+..|.||||+|+..   |+.+++++|++.  +.+++.+|..|.||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~--ga~in~~d~~g~Tp  208 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCCH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC--CCCccccCCCCCCH
Confidence            468999999999999999999877632    133478899999999999   999999999999  67899999999999


Q ss_pred             HHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           79 LSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        79 LH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      ||+|+ ..|     +.|++.+.+ ++.+|.+|.||||+|+..|+.+++++|++
T Consensus       209 Lh~A~-~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  259 (278)
T 1dcq_A          209 LHYCC-LTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQ  259 (278)
T ss_dssp             HHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHH-HcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999 999     888887765 68899999999999999999999999964

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.69  E-value=4e-17  Score=133.51  Aligned_cols=93  Identities=19%  Similarity=0.273  Sum_probs=78.3

Q ss_pred             CCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHh
Q 043183          104 NQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCF  183 (564)
Q Consensus       104 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~  183 (564)
                      +|+||||+|+..|+.+++++|++              .+.+ ++.+|.+|+||||+|+..|+.                 
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~~-~n~~d~~g~t~L~~A~~~~~~-----------------   48 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE--------------AGAD-VNAKDKNGRTPLHLAARNGHL-----------------   48 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTTCH-----------------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH--------------cCCC-CcccCCCCCCHHHHHHHcCCH-----------------
Confidence            48999999999999999999863              4444 478999999999999999964                 


Q ss_pred             hhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 043183          184 NLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPN  248 (564)
Q Consensus       184 ~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~  248 (564)
                                     ++++.|++     .+.+++.+|.+|+||||+|+..|+.+++++|+++|++
T Consensus        49 ---------------~~v~~Ll~-----~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           49 ---------------EVVKLLLE-----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             ---------------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ---------------HHHHHHHH-----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                           56666654     3567888999999999999999999999999998874

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.68  E-value=8.3e-17  Score=173.20  Aligned_cols=116  Identities=15%  Similarity=0.159  Sum_probs=102.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCcccccc-----ccCCCCChHHHHHHh---cCCHHHHHHHHHcCCcccccCCCCCCCc
Q 043183            6 RLQTYRAALNGDWAVAKSIYDVYEGEIGI-----AIAKRGDTALRIAAA---GKYIEFLKELVKIMEAEDLAKPNKHGGT   77 (564)
Q Consensus         6 ~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~-----~~~~~g~TpLh~Aa~---~g~~~iv~~Ll~~~~~~~l~~~d~~G~T   77 (564)
                      .+.||.|+..|+.+.++.|++.+.+. +.     ..+..|.||||+||.   .|+.++|++|++.  +.+++.+|..|+|
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~--ga~vn~~d~~g~T  209 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNT  209 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH--SCCTTCCCSSSCC
T ss_pred             HHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc--CCCCCccCCCCCc
Confidence            36799999999999999999998652 11     127789999999976   9999999999998  6789999999999


Q ss_pred             HHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           78 ALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        78 pLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      |||+|+ ..|     +.|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++
T Consensus       210 pLh~A~-~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~  261 (497)
T 3lvq_E          210 ALHYAA-LYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ  261 (497)
T ss_dssp             HHHHHT-TTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHH-HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999 999     888888765 68889999999999999999999999864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.67  E-value=1.4e-16  Score=163.93  Aligned_cols=144  Identities=13%  Similarity=0.104  Sum_probs=99.8

Q ss_pred             CCCChHHHHHHhc-CCHHHHHHHHHcCCcccccCCC--CCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHH
Q 043183           38 KRGDTALRIAAAG-KYIEFLKELVKIMEAEDLAKPN--KHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPI  109 (564)
Q Consensus        38 ~~g~TpLh~Aa~~-g~~~iv~~Ll~~~~~~~l~~~d--~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpL  109 (564)
                      ..+.|+||.|+.. |+.++++.|++.  +.+++..|  ..|.||||+|+ ..|     +.|++.+.+ ++.+|..|+|||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa-~~g~~~iv~~LL~~Gad-vn~~d~~G~TpL  272 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQAT-AANSLLACEFLLQNGAN-VNQADSAGRGPL  272 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHH-HCCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence            3457899999999 999999999998  56777777  89999999999 898     888888755 578899999999


Q ss_pred             HHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCc
Q 043183          110 DVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAED  189 (564)
Q Consensus       110 h~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h  189 (564)
                      |+|+..|+.+++++|++              .+.+ ++.+|.+|.||||+|+..|+.                       
T Consensus       273 h~A~~~g~~~~v~~LL~--------------~Gad-~~~~d~~G~TpL~~A~~~g~~-----------------------  314 (368)
T 3jue_A          273 HHATILGHTGLACLFLK--------------RGAD-LGARDSEGRDPLTIAMETANA-----------------------  314 (368)
T ss_dssp             HHHHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTTCH-----------------------
T ss_pred             HHHHHcCcHHHHHHHHH--------------CcCC-CCCcCCCCCCHHHHHHHCCCH-----------------------
Confidence            99999999999998863              4444 478899999999999999954                       


Q ss_pred             HHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcC
Q 043183          190 VEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQG  234 (564)
Q Consensus       190 ~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g  234 (564)
                               ++++.|....  ....+....+..+.|+++++....
T Consensus       315 ---------~iv~lLl~~~--~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          315 ---------DIVTLLRLAK--MREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             ---------HHHHHHHHHH--C-----------------------
T ss_pred             ---------HHHHHHHHcC--CCcccccccCCCCCCHHHHHHHHH
Confidence                     5666665432  233344455667788988876654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.66  E-value=3e-16  Score=128.25  Aligned_cols=79  Identities=29%  Similarity=0.331  Sum_probs=53.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      +|+||||.|+..|+.++++.|++.+.+.  ...|..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHH
Confidence            3677777777777777777777766542  33566777777777777777777777776  4556666666666666666


Q ss_pred             Hhch
Q 043183           84 HLEG   87 (564)
Q Consensus        84 ~~~G   87 (564)
                       ..|
T Consensus        77 -~~~   79 (93)
T 1n0q_A           77 -RNG   79 (93)
T ss_dssp             -HTT
T ss_pred             -HcC
Confidence             555

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.60  E-value=8.6e-16  Score=130.65  Aligned_cols=101  Identities=21%  Similarity=0.218  Sum_probs=85.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |.+|.||||.||..|+.++++.|++.+.+.  ...|..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV--NARSKDGNTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNTPEHL   81 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCS--SCCCSSSCCTTHHHHTTTCHHHHHHHTTT--TCCTTCCCTTCCCTTHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence            568999999999999999999999887652  44688899999999999999999999988  66788899999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLP  108 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~Tp  108 (564)
                      |+ ..|     +.|++.+.+ ++.++..|.||
T Consensus        82 A~-~~~~~~~~~~Ll~~ga~-~n~~~~~~~~~  111 (115)
T 2l6b_A           82 AK-KNGHHEIVKLLDAKGAD-VNARSWGSSHH  111 (115)
T ss_dssp             HH-TTTCHHHHHHHHTTSSS-HHHHSCCCC--
T ss_pred             HH-HCCCHHHHHHHHHcCCC-CCcCCcccccc
Confidence            99 888     777877755 57778888877

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.60  E-value=7.3e-16  Score=131.09  Aligned_cols=102  Identities=21%  Similarity=0.289  Sum_probs=87.7

Q ss_pred             cCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHH
Q 043183           36 IAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPID  110 (564)
Q Consensus        36 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh  110 (564)
                      .|.+|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|.||||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~-~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~   80 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAA-KNGHAEIVKLLLAKGAD-VNARSKDGNTPEH   80 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTT--TCCSSCCCSSSCCTTHHHH-TTTCHHHHHHHTTTTCC-TTCCCTTCCCTTH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH-HcCcHHHHHHHHHcCCC-CcccCCCCCCHHH
Confidence            588999999999999999999999988  5678899999999999999 998     788887655 5788999999999


Q ss_pred             HHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183          111 VAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus       111 ~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      +|+..|+.+++++|++              ++.+ ++.++..|.||
T Consensus        81 ~A~~~~~~~~~~~Ll~--------------~ga~-~n~~~~~~~~~  111 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDA--------------KGAD-VNARSWGSSHH  111 (115)
T ss_dssp             HHHTTTCHHHHHHHHT--------------TSSS-HHHHSCCCC--
T ss_pred             HHHHCCCHHHHHHHHH--------------cCCC-CCcCCcccccc
Confidence            9999999999998863              4444 47788888887

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.52  E-value=1.9e-14  Score=121.55  Aligned_cols=86  Identities=17%  Similarity=0.253  Sum_probs=66.6

Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHH
Q 043183           35 AIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPI  109 (564)
Q Consensus        35 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpL  109 (564)
                      ..+.+|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+ ..|     +.|++.+.+ ++.+|..|+|||
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~-~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl   94 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAA-RNGHLEVVKLLLEAGAD-VXAQDKFGKTAF   94 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-ccccccCCCcHH
Confidence            3577788888888888888888888877  5677778888888888888 777     777777644 567788888888


Q ss_pred             HHHHHcCCCchHHHH
Q 043183          110 DVAASLGHKDMPICM  124 (564)
Q Consensus       110 h~Aa~~g~~~iv~~L  124 (564)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            888888888888875

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.49  E-value=5.9e-14  Score=118.45  Aligned_cols=81  Identities=23%  Similarity=0.265  Sum_probs=73.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |.+|.||||.|+..|+.++++.|++.+.+ + ...|..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGAD-V-AAKDKNGSTPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCC-T-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCC-C-CccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCcHHHH
Confidence            56799999999999999999999998765 3 44588999999999999999999999998  67889999999999999


Q ss_pred             HHHhch
Q 043183           82 LLHLEG   87 (564)
Q Consensus        82 Aa~~~G   87 (564)
                      |+ ..|
T Consensus        97 A~-~~~  101 (110)
T 2zgd_A           97 SI-DNG  101 (110)
T ss_dssp             HH-HHT
T ss_pred             HH-HcC
Confidence            99 887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	564
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.004

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 29/247 (11%), Positives = 71/247 (28%), Gaps = 19/247 (7%)

Query: 10  YRAALNGDWAVAKSIYDVYEGEIGI-AIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDL 68
           + AA+ G  +   ++  +   +  +  I      A R+AA   ++  L  L ++   E +
Sbjct: 95  FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 154

Query: 69  AKPNKHGGTALSMLLHLEGRVMMKH------NRSIAMVRDHNQTLPIDVAASLGHKDMPI 122
           A        A  +        ++          + AM++  N       A   GH ++  
Sbjct: 155 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 214

Query: 123 CMVS----MNMLLPDVALQLCRDRPKLATLRA---GDCETPLHALARKNLTSSNFINQNQ 175
            ++     +            +              +            +      ++  
Sbjct: 215 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 274

Query: 176 RGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGN 235
           +G +     +   D        L  +  L     + + +  + +      L+  A + GN
Sbjct: 275 QGFYMLRNLIRRNDEV-----LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 329

Query: 236 VGFLLIL 242
            G   +L
Sbjct: 330 QGACALL 336

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 10/130 (7%)

Query: 36  IAKRGDTALRIAAAGKYIEFLKELVKIM-EAEDLAKPNKHGGTAL---SMLLHLEGRVMM 91
           + + GDTAL +A   ++  FL  L+      E L   N  G TAL   ++L        +
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 92  KHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAG 151
               +  +V +      + +A  +             +LL               T    
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTC------ACVLLQPRPSHPRDASDTYLTQSQD 118

Query: 152 DCETPLHALA 161
                 HA A
Sbjct: 119 CTPDTSHAPA 128

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 9/96 (9%), Positives = 26/96 (27%), Gaps = 2/96 (2%)

Query: 40  GDTALRIAAAGKYIEFLKELVKIMEAE--DLAKPNKHGGTALSMLLHLEGRVMMKHNRSI 97
           GD+ L +A   +      E+++ ++ +   L   N    T L + +      + +     
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 98  AMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPD 133
               +               +     +  +      
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 97

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 40  GDTALRIAAAGKYIEFLKELVKIMEAE--DLAKPNKHGGTAL---SMLLHLEGRVMMKHN 94
           GDT L IA     +  +  LV + +    +L   N    T L    +        ++   
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 95  RSIAMVRDHNQTLPIDVAASLGHKDMPICM 124
            +  M  D +      +A           +
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRAL 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	564
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.93
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.89
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.87
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.87
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.87
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.87
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.86
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.83
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.82
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.79
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.78
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.77
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.74
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.73
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.61

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-32  Score=284.89  Aligned_cols=248  Identities=17%  Similarity=0.159  Sum_probs=181.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHh
Q 043183            6 RLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHL   85 (564)
Q Consensus         6 ~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~   85 (564)
                      .||||.||..|+.++|+.|++.+.+ + ...|..|+||||+||..|+.++|++|+++  +.+++.+|..|.||||+|+ .
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~-i-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~--gadi~~~~~~g~t~L~~A~-~   75 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGAS-P-NVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAA-R   75 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-S-CCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHH-H
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCC-C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHH-H
Confidence            4999999999999999999998765 3 44688999999999999999999999998  5688999999999999999 8


Q ss_pred             ch-----HHHHhcCc-----------------------------------------------------------------
Q 043183           86 EG-----RVMMKHNR-----------------------------------------------------------------   95 (564)
Q Consensus        86 ~G-----~~Ll~~~~-----------------------------------------------------------------   95 (564)
                      .|     +.|+...+                                                                 
T Consensus        76 ~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~  155 (408)
T d1n11a_          76 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD  155 (408)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcC
Confidence            88     33332110                                                                 


Q ss_pred             ccccccCCCCCcHHHHHHHcCCCchHHHHHH-------------------------------------------------
Q 043183           96 SIAMVRDHNQTLPIDVAASLGHKDMPICMVS-------------------------------------------------  126 (564)
Q Consensus        96 ~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-------------------------------------------------  126 (564)
                      ..++..+.+|.+|||+|+..|+.+++++|+.                                                 
T Consensus       156 ~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l  235 (408)
T d1n11a_         156 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  235 (408)
T ss_dssp             CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHH
Confidence            1123456677788888888888888888775                                                 


Q ss_pred             ---cccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhc------------CCcHH
Q 043183          127 ---MNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLG------------AEDVE  191 (564)
Q Consensus       127 ---~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~------------~~h~~  191 (564)
                         +..+..++++.++...... +..|..|.||||.|+..++.+          ..+.+++.+            ..|..
T Consensus       236 ~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~----------i~~~Ll~~g~~~~~~~~~~~t~L~~~  304 (408)
T d1n11a_         236 HLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVP----------VADVLIKHGVMVDATTRMGYTPLHVA  304 (408)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHH----------HHHHHHHHTCCTTCCCSSCCCHHHHH
T ss_pred             HHHHHhCcHhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHH----------HHHHHHHCCCccccccccccccchhh
Confidence               1233445555555544433 556778888888888887542          222222111            01111


Q ss_pred             HHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHH
Q 043183          192 VQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILH  271 (564)
Q Consensus       192 v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLh  271 (564)
                      +. ....++++.+++     .+.+++.+|.+|+||||+|+++|+.++|++|+++|+++....          ++|+||||
T Consensus       305 ~~-~~~~~~~~~ll~-----~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d----------~~G~t~L~  368 (408)
T d1n11a_         305 SH-YGNIKLVKFLLQ-----HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS----------SDGTTPLA  368 (408)
T ss_dssp             HH-SSCSHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC----------SSSCCHHH
T ss_pred             cc-cCcceeeeeecc-----ccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC----------CCCCCHHH
Confidence            11 011234444433     456788999999999999999999999999999999984433          89999999


Q ss_pred             HHHhcCCCCccccc
Q 043183          272 LAAMLPPQDRLNIV  285 (564)
Q Consensus       272 lAa~~~~~~~~~~l  285 (564)
                      +|++.|+.+++++|
T Consensus       369 ~A~~~~~~~iv~~L  382 (408)
T d1n11a_         369 IAKRLGYISVTDVL  382 (408)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHH
Confidence            99999999888765

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.1e-32  Score=261.66  Aligned_cols=195  Identities=16%  Similarity=0.088  Sum_probs=162.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhCcc-ccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHH
Q 043183            1 LTRSRRLQTYRAALNGDWAVAKSIYDVYEG-EIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTAL   79 (564)
Q Consensus         1 l~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~-~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpL   79 (564)
                      +|.+|+||||.||++|+.++++.|++.+.+ ......|..|.||||+||..|+.+++++|++.  +.+++.+|.+|.|||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~--ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTSCCHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccc--cccccccccccchhh
Confidence            477999999999999999999999998543 12245688999999999999999999999998  678899999999999


Q ss_pred             HHHHHhch-----HHHHhcC----------------------------------------------cccccccCCCCCcH
Q 043183           80 SMLLHLEG-----RVMMKHN----------------------------------------------RSIAMVRDHNQTLP  108 (564)
Q Consensus        80 H~Aa~~~G-----~~Ll~~~----------------------------------------------~~~~~~~d~~G~Tp  108 (564)
                      |+|+ ..|     +.+++..                                              ....+.+|.+|.||
T Consensus        83 ~~A~-~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          83 HLAC-RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHT-TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhh-ccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            9999 888     3332211                                              01123568889999


Q ss_pred             HHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCC
Q 043183          109 IDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAE  188 (564)
Q Consensus       109 Lh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~  188 (564)
                      ||+||..|+.+++++|++              .+.......+..|.||||+|++.|+.                      
T Consensus       162 Lh~A~~~~~~~~v~~Ll~--------------~~~~~~~~~~~~g~TpL~~A~~~~~~----------------------  205 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRD--------------AGADLNKPEPTCGRTPLHLAVEAQAA----------------------  205 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHH--------------HTCCTTCCCTTTCCCHHHHHHHTTCH----------------------
T ss_pred             ccccccccccccccchhc--------------ccccccccccccccccccccccccHH----------------------
Confidence            999999999999998854              66666566788999999999999965                      


Q ss_pred             cHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183          189 DVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNL  249 (564)
Q Consensus       189 h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~  249 (564)
                                ++++.|++     .+.+++.+|..|+||||+|+.+|+.+++++|+++|++.
T Consensus       206 ----------~~v~~Ll~-----~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         206 ----------SVLELLLK-----AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             ----------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCC
T ss_pred             ----------HHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence                      67776654     35678899999999999999999999999999999873

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.2e-32  Score=256.72  Aligned_cols=213  Identities=15%  Similarity=0.129  Sum_probs=180.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHH
Q 043183            5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLH   84 (564)
Q Consensus         5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~   84 (564)
                      .++.|+.+|..|+.+.|+.+++.++..+ ...|.+|+||||+||..|+.+++++|++.  +......+..+.++++.|+ 
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~-~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~-   78 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIAA-   78 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHH--TCCSCCCCTTCCCHHHHHH-
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcC-cCcCCCCCCHHHHHHHhhhhccccccccc--ccccccccccccccccccc-
Confidence            4789999999999999999999988766 55799999999999999999999999998  4456667788899999999 


Q ss_pred             hch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHH
Q 043183           85 LEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHA  159 (564)
Q Consensus        85 ~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~  159 (564)
                      ..|     +.|++++.+ ++.+|.+|.||||+|+..|+.+++++|++              ++.+ ++.+|.+|.||||+
T Consensus        79 ~~~~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~--------------~g~d-~~~~~~~~~t~L~~  142 (223)
T d1uoha_          79 SAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLE--------------GGAN-PDAKDHYEATAMHR  142 (223)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHH
T ss_pred             cccccchhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHH--------------CCCC-CCCcCCCCCccchh
Confidence            888     788888764 57889999999999999999999998853              4444 47889999999999


Q ss_pred             HHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHH
Q 043183          160 LARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFL  239 (564)
Q Consensus       160 Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv  239 (564)
                      |+..++.                                ++++.+..     .+.+++.+|..|+||||+|+..|+.+++
T Consensus       143 a~~~~~~--------------------------------~~~~~L~~-----~~~~i~~~d~~g~TpL~~Aa~~g~~~~v  185 (223)
T d1uoha_         143 AAAKGNL--------------------------------KMIHILLY-----YKASTNIQDTEGNTPLHLACDEERVEEA  185 (223)
T ss_dssp             HHHTTCH--------------------------------HHHHHHHH-----TTCCSCCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             hhhcCCc--------------------------------chhhhhcc-----ccceeeeccCCCCceeccccccCcHHHH
Confidence            9999954                                34444433     4456788999999999999999999999


Q ss_pred             HHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          240 LILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       240 ~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      ++|+++|+++....          .+|+||||+|+ .|+.++++.|
T Consensus       186 ~~LL~~Gad~~~~d----------~~g~tpl~~A~-~~~~~i~~~L  220 (223)
T d1uoha_         186 KLLVSQGASIYIEN----------KEEKTPLQVAK-GGLGLILKRM  220 (223)
T ss_dssp             HHHHHTTCCSCCCC----------TTSCCHHHHCC-TTHHHHHHHH
T ss_pred             HHHHHCCCCCCCCC----------CCCCCHHHHHH-CCCHHHHhcc
Confidence            99999999985443          89999999984 5776665543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.2e-31  Score=258.56  Aligned_cols=203  Identities=17%  Similarity=0.116  Sum_probs=159.7

Q ss_pred             ccCCCCChHHHHHHhcCCHHHHHHHHHcCCc-ccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcH
Q 043183           35 AIAKRGDTALRIAAAGKYIEFLKELVKIMEA-EDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLP  108 (564)
Q Consensus        35 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~Tp  108 (564)
                      .++++|.||||+||+.|+.+++++|++.+.. ..++.+|..|.||||+|+ ..|     +.|++.+.+ ++.+|.+|.||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~-~~g~~~iv~~Ll~~ga~-i~~~d~~g~tp   81 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA-ILGEASTVEKLYAAGAG-VLVAERGGHTA   81 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCC-SSCCCTTSCCH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHH-hhccccccccccccccc-ccccccccchh
Confidence            4688999999999999999999999998532 337889999999999999 999     888888755 57889999999


Q ss_pred             HHHHHHcCCCchHHHHHHcccC-------------------C-------------HHHHHHHHHcCCccccccCCCCCcH
Q 043183          109 IDVAASLGHKDMPICMVSMNML-------------------L-------------PDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus       109 Lh~Aa~~g~~~iv~~Ll~~~~~-------------------~-------------~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      ||+|+..++.+++++|++....                   .             ......+........+.+|.+|.||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            9999999999999999861000                   0             0001111111122346789999999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV  236 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~  236 (564)
                      ||+|+..++.                                ++++.|++...    ......+..|.||||+|++.|+.
T Consensus       162 Lh~A~~~~~~--------------------------------~~v~~Ll~~~~----~~~~~~~~~g~TpL~~A~~~~~~  205 (255)
T d1oy3d_         162 LHVAVIHKDA--------------------------------EMVRLLRDAGA----DLNKPEPTCGRTPLHLAVEAQAA  205 (255)
T ss_dssp             HHHHHHTTCH--------------------------------HHHHHHHHHTC----CTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             cccccccccc--------------------------------ccccchhcccc----cccccccccccccccccccccHH
Confidence            9999999965                                66776655422    22234567899999999999999


Q ss_pred             HHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          237 GFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       237 ~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      +++++|+++|+++....          ++|+||||+|+..++.+++++|
T Consensus       206 ~~v~~Ll~~gadin~~d----------~~g~t~L~~A~~~~~~~i~~~L  244 (255)
T d1oy3d_         206 SVLELLLKAGADPTARM----------YGGRTPLGSALLRPNPILARLL  244 (255)
T ss_dssp             HHHHHHHHTTCCTTCCC----------TTSCCHHHHHHTSSCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCC----------CCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999884443          8899999999999999998887

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.9e-30  Score=245.49  Aligned_cols=207  Identities=13%  Similarity=0.115  Sum_probs=169.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCccc-ccCCCCCCCcHHHHHHH
Q 043183            6 RLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAED-LAKPNKHGGTALSMLLH   84 (564)
Q Consensus         6 ~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~-l~~~d~~G~TpLH~Aa~   84 (564)
                      +||||.||++|+.+.++.|++..+..+ ...|.+|.||||+|+..|+.+++++|++.+...+ .+..|..|.||+|+|+ 
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~-   78 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC-   78 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHH-
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccc-
Confidence            589999999999999999999887765 5579999999999999999999999999853322 4567889999999999 


Q ss_pred             hch-----HHHHhcCc-ccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHH
Q 043183           85 LEG-----RVMMKHNR-SIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLH  158 (564)
Q Consensus        85 ~~G-----~~Ll~~~~-~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh  158 (564)
                      ..+     +.++.... ......+..+.||++.++..++.+++++|++              .+ ......|.+|+||||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~--------------~~-~~~~~~~~~g~t~l~  143 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE--------------NG-ASVRIKDKFNQIPLH  143 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TT-CCSCCCCTTSCCHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhh--------------hc-ccccccCCCCCCccc
Confidence            887     33333332 2245567789999999999999999998863              33 334678999999999


Q ss_pred             HHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHH
Q 043183          159 ALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGF  238 (564)
Q Consensus       159 ~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~i  238 (564)
                      +|+..|+.                                ++++.|    +...+.+++.+|.+|+||||+|+++|+.++
T Consensus       144 ~a~~~~~~--------------------------------~~~~~L----l~~~~~~in~~d~~g~TpLh~A~~~~~~~~  187 (229)
T d1ixva_         144 RAASVGSL--------------------------------KLIELL----CGLGKSAVNWQDKQGWTPLFHALAEGHGDA  187 (229)
T ss_dssp             HHHHHTCH--------------------------------HHHHHH----HTTTCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hhhhcccc--------------------------------cccccc----cccccccccccccccCCchhhhcccccHHH
Confidence            99999964                                556555    444556788899999999999999999999


Q ss_pred             HHHHHH-hCCCcccccccccchHHHhhcCCchHHHHHh
Q 043183          239 LLILTR-EYPNLHISYRRFESSGAHLQTRNNILHLAAM  275 (564)
Q Consensus       239 v~~LL~-~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~  275 (564)
                      +++|++ .|+++....          ++|+||||+|+.
T Consensus       188 v~~Ll~~~gad~~~~d----------~~g~t~l~~A~~  215 (229)
T d1ixva_         188 AVLLVEKYGAEYDLVD----------NKGAKAEDVALN  215 (229)
T ss_dssp             HHHHHHHHCCCSCCCC----------TTSCCTGGGCSC
T ss_pred             HHHHHHhcCCCCCCcC----------CCCCCHHHHHhh
Confidence            999996 477874433          899999999984

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=5.9e-31  Score=258.25  Aligned_cols=220  Identities=17%  Similarity=0.099  Sum_probs=136.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCcc-------ccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCc
Q 043183            5 RRLQTYRAALNGDWAVAKSIYDVYEG-------EIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGT   77 (564)
Q Consensus         5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~-------~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~T   77 (564)
                      |+||||.||..|+.++|+.|+.....       ++ ...|.+|+||||+|+..|+.++|++|++.  +.+++.+|..|.|
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~--Gad~n~~~~~g~t  109 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKA--GADPTIYNKSERS  109 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTCCC
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeeecccccccccccccccccc--ccccccccccccc
Confidence            55666666666666655555433211       12 22355566666666666666666666655  3445555566666


Q ss_pred             HHHHHHHhch-----HHHHhcCc--ccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCC-------
Q 043183           78 ALSMLLHLEG-----RVMMKHNR--SIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRP-------  143 (564)
Q Consensus        78 pLH~Aa~~~G-----~~Ll~~~~--~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~-------  143 (564)
                      |||+|+ ..|     +.+.....  ......+..+.++.+.+...+..+....           +..+.+...       
T Consensus       110 ~l~~a~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  177 (277)
T d2fo1e1         110 ALHQAA-ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS-----------AKLLVEKGAKVDYDGA  177 (277)
T ss_dssp             HHHHHH-HTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHH-----------HHHHHHHTCCSSCCSG
T ss_pred             cccchh-hhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccc-----------cccccccccccccccc
Confidence            666666 555     22222111  1223345555566666555554432222           122222221       


Q ss_pred             ccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCC
Q 043183          144 KLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKP  223 (564)
Q Consensus       144 ~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G  223 (564)
                      ......+..|.||||+++..++.                                +++..+    +...+.+.+.+|..|
T Consensus       178 ~~~~~~~~~g~t~L~~~~~~~~~--------------------------------~~~~~~----l~~~~~~~~~~d~~g  221 (277)
T d2fo1e1         178 ARKDSEKYKGRTALHYAAQVSNM--------------------------------PIVKYL----VGEKGSNKDKQDEDG  221 (277)
T ss_dssp             GGTSSSSCCCCCTHHHHHSSCCH--------------------------------HHHHHH----HHHSCCCTTCCCTTC
T ss_pred             ccccccccCCCCccccccccccc--------------------------------cccccc----cccccccccccCCCC
Confidence            12245677899999999999864                                333333    233455677889999


Q ss_pred             chHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          224 GALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       224 ~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      .||||+|++.|+.+++++|+++|+++....          .+|+||||+|++.|+.+++++|
T Consensus       222 ~tpL~~A~~~g~~~iv~~Ll~~gadin~~d----------~~G~T~L~~A~~~~~~~iv~lL  273 (277)
T d2fo1e1         222 KTPIMLAAQEGRIEVVMYLIQQGASVEAVD----------ATDHTARQLAQANNHHNIVDIF  273 (277)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCC----------SSSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCCCcC----------CCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999985443          8999999999999999988875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=6.2e-30  Score=253.21  Aligned_cols=227  Identities=17%  Similarity=0.117  Sum_probs=183.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      ++++.||||.||..|+.++|+.||+++.+ + ...|.+|.||||+|+..|+.++|++|+++  +.+....+..+.||||.
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gad-v-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~--~~~~~~~~~~~~~~L~~  112 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGAD-I-NYANVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHA  112 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCC-T-TCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCC-C-CccCCCCCcHHHHHHhcCCceeeeeeccc--ccccccccccccccccc
Confidence            34567999999999999999999999876 3 44689999999999999999999999998  45567778899999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCH------------HHHHHHHHcCCc
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLP------------DVALQLCRDRPK  144 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~------------~i~~~Ll~~~~~  144 (564)
                      |+ ..|     +.+++.+.. ....|..|.+|+++|+..++.+.++.++.......            ......+.....
T Consensus       113 a~-~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (291)
T d1s70b_         113 AA-SCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (291)
T ss_dssp             HH-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cc-cccccchhhcccccCcc-cccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccc
Confidence            99 888     677776643 56788999999999999999999999986222211            122233333344


Q ss_pred             cccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCc
Q 043183          145 LATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPG  224 (564)
Q Consensus       145 ~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~  224 (564)
                      .....+..|.||||+|+..|+.                                ++++.|++     .+.+++.+|.+|.
T Consensus       191 ~~~~~~~~g~t~L~~a~~~~~~--------------------------------~~~~~Ll~-----~g~din~~~~~g~  233 (291)
T d1s70b_         191 NDVRHAKSGGTALHVAAAKGYT--------------------------------EVLKLLIQ-----ARYDVNIKDYDGW  233 (291)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCH--------------------------------HHHHHHHT-----TTCCTTCCCTTCC
T ss_pred             ccccccCCCCChhhHHHHcCCh--------------------------------hhhccccc-----ceecccccccCCC
Confidence            4466788999999999999965                                56666543     4567888999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          225 ALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       225 TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      ||||+|++.|+.++|++|+++|+++...+          ++|+||||+|++    +++++|
T Consensus       234 TpL~~A~~~g~~~iv~lLl~~Gadv~~~d----------~~G~TaL~~A~e----~~~~~L  280 (291)
T d1s70b_         234 TPLHAAAHWGKEEACRILVENLCDMEAVN----------KVGQTAFDVADE----DILGYL  280 (291)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------TTSCCTTTSCCS----GGGHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcC----------CCCCCHHHHHHH----HHHHHH
Confidence            99999999999999999999999984433          899999999975    455554

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.2e-28  Score=229.88  Aligned_cols=184  Identities=17%  Similarity=0.155  Sum_probs=159.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |..|+||||.||..|+.++++.+++.....  ...+..+.++++.|+..|+.+++++|++.  +.+++.+|..|.||||+
T Consensus        34 D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~--~~d~~~~d~~g~tpL~~  109 (223)
T d1uoha_          34 DQDSRTALHWACSAGHTEIVEFLLQLGVPV--NDKDDAGWSPLHIAASAGRDEIVKALLGK--GAQVNAVNQNGCTPLHY  109 (223)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHTCCS--CCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred             CCCCCCHHHHHHHhhhhccccccccccccc--ccccccccccccccccccccchhHHHhcc--CceeEeeCCCCCchhhH
Confidence            678999999999999999999999987654  33467889999999999999999999998  56889999999999999


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      |+ ..|     +.|++.+.+ ++.+|.+|.||||+|+..++.+++++|++              .+.+ .+.+|.+|+||
T Consensus       110 A~-~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~~~~L~~--------------~~~~-i~~~d~~g~Tp  172 (223)
T d1uoha_         110 AA-SKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLY--------------YKAS-TNIQDTEGNTP  172 (223)
T ss_dssp             HH-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-SCCCCTTCCCH
T ss_pred             HH-HcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcchhhhhcc--------------ccce-eeeccCCCCce
Confidence            99 898     888888754 57889999999999999999999888753              4444 58899999999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV  236 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~  236 (564)
                      ||+|++.|+.                                ++++.|++     .+++++.+|.+|+||||+| ..|+.
T Consensus       173 L~~Aa~~g~~--------------------------------~~v~~LL~-----~Gad~~~~d~~g~tpl~~A-~~~~~  214 (223)
T d1uoha_         173 LHLACDEERV--------------------------------EEAKLLVS-----QGASIYIENKEEKTPLQVA-KGGLG  214 (223)
T ss_dssp             HHHHHHTTCH--------------------------------HHHHHHHH-----TTCCSCCCCTTSCCHHHHC-CTTHH
T ss_pred             eccccccCcH--------------------------------HHHHHHHH-----CCCCCCCCCCCCCCHHHHH-HCCCH
Confidence            9999999965                                66776654     3567889999999999998 57999


Q ss_pred             HHHHHHHH
Q 043183          237 GFLLILTR  244 (564)
Q Consensus       237 ~iv~~LL~  244 (564)
                      +++++||+
T Consensus       215 ~i~~~Ll~  222 (223)
T d1uoha_         215 LILKRMVE  222 (223)
T ss_dssp             HHHHHHHC
T ss_pred             HHHhcccC
Confidence            99999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=224.28  Aligned_cols=214  Identities=14%  Similarity=0.145  Sum_probs=168.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHh---CccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDV---YEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALS   80 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~---~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH   80 (564)
                      +|+||||.||.+|+.++++.|++.   ....+ ...|.+|.||||+|+..|+.+++++|++.  +.+.+..+..|.++++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~--ga~~~~~~~~~~~~~~   78 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQTAAH   78 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccccccccccccc--cccccccccccccccc
Confidence            699999999999999999999873   22223 44688999999999999999999999998  5667778899999999


Q ss_pred             HHHHhch-----HHHHhcC---cccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCC
Q 043183           81 MLLHLEG-----RVMMKHN---RSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGD  152 (564)
Q Consensus        81 ~Aa~~~G-----~~Ll~~~---~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~  152 (564)
                      .|. ..+     +......   ....+.....+.+|||.+.........+.|.              ..........+..
T Consensus        79 ~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~--------------~~~~~~~~~~~~~  143 (228)
T d1k1aa_          79 LAC-EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL--------------ERGADIDAVDIKS  143 (228)
T ss_dssp             HHH-HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH--------------HTTCCTTCCCTTT
T ss_pred             ccc-ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhh--------------ccccccccccccc
Confidence            999 777     2222221   1223445667889999999888877777664              3555555667889


Q ss_pred             CCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHH
Q 043183          153 CETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAK  232 (564)
Q Consensus       153 G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~  232 (564)
                      |.+|||.|+..+..                                ++++.+.+     .+...+.+|..|.||||+|+.
T Consensus       144 ~~~~l~~a~~~~~~--------------------------------~~~~~~~~-----~~~~~~~~d~~g~t~L~~A~~  186 (228)
T d1k1aa_         144 GRSPLIHAVENNSL--------------------------------SMVQLLLQ-----HGANVNAQMYSGSSALHSASG  186 (228)
T ss_dssp             CCCHHHHHHHTTCH--------------------------------HHHHHHHH-----TTCCTTCBCTTSCBHHHHHHH
T ss_pred             hhhHHHHHHHhhhh--------------------------------hhhhhhhh-----hccccccccccCcchHHHHHH
Confidence            99999999998854                                34444433     344667789999999999999


Q ss_pred             cCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCcc
Q 043183          233 QGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRL  282 (564)
Q Consensus       233 ~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~  282 (564)
                      .|+.+++++|+++|+|+....          .+|+||||+|++.|+.+++
T Consensus       187 ~g~~~~v~~Ll~~Gad~n~~d----------~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         187 RGLLPLVRTLVRSGADSSLKN----------CHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCC----------TTSCCTTTTCSSHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCC----------CCCCCHHHHHHhCCCcccc
Confidence            999999999999999874333          8999999999998875554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.9e-26  Score=226.78  Aligned_cols=250  Identities=13%  Similarity=0.103  Sum_probs=161.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      ++.|+||.|+++|+.++|+.|++++++ ++...+..|.||||+|+..|+.+++++|++.  +......+..+.+|.+.|+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~d-in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~--~~~~~~~~~~~~~~~~~~~   80 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCCCHHHHHHHcCCHHHhhhhccc--cccccccccccchhhHHHh
Confidence            467999999999999999999999876 4455567899999999999999999999988  3455566667778888877


Q ss_pred             Hhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHH
Q 043183           84 HLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLH  158 (564)
Q Consensus        84 ~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh  158 (564)
                       ..+     ...++...+ ....+..|.|+++.|+..|+...++.++.......     +..+........+..|.||||
T Consensus        81 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~t~L~  153 (285)
T d1wdya_          81 -IAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN-----LRRKTKEDQERLRKGGATALM  153 (285)
T ss_dssp             -HHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCCCCHHHHHTTCCCCCHHH
T ss_pred             -hcCCccccchhhhhccc-ccccccCCCchhHHHHHhcchhhhhhhhhhccccc-----ccccchhhhhhhcccCchHHH
Confidence             666     333443322 23456667777777777777777666654100000     000001111233445666666


Q ss_pred             HHHhCCCCC------------cccccc-cccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCch
Q 043183          159 ALARKNLTS------------SNFINQ-NQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGA  225 (564)
Q Consensus       159 ~Aa~~g~~~------------~~f~~~-~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~T  225 (564)
                      +|++.|+.+            .+.... ...+....+.....       ....++++.|++     .+.+++.+|..|.|
T Consensus       154 ~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~Li~-----~ga~~n~~~~~g~t  221 (285)
T d1wdya_         154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD-------SDVEAITHLLLD-----HGADVNVRGERGKT  221 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT-------TTHHHHHHHHHH-----TTCCSSCCCTTSCC
T ss_pred             HHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccc-------hHHHHHHHHHHH-----CCCCCCccCCCCCC
Confidence            666665432            000000 00000000000000       111245555543     34567788899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHh-CCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          226 LIFDAAKQGNVGFLLILTRE-YPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       226 pLh~Aa~~g~~~iv~~LL~~-~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      |||.|++.|+.+++++||+. +.++....          .+|+||||+|++.|+.+++++|
T Consensus       222 ~L~~a~~~~~~~~v~~lL~~~g~din~~d----------~~G~TpL~~A~~~~~~eiv~~L  272 (285)
T d1wdya_         222 PLILAVEKKHLGLVQRLLEQEHIEINDTD----------SDGKTALLLAVELKLKKIAELL  272 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSSSCCTTCCC----------TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccchhhhcCcHHHHHHHHHcCCCCCcCCC----------CCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999975 55663322          7899999999999999988876

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=239.25  Aligned_cols=258  Identities=17%  Similarity=0.128  Sum_probs=178.5

Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHc
Q 043183           41 DTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASL  115 (564)
Q Consensus        41 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~  115 (564)
                      .||||+||..|+.++|++|++.  +.+++..|..|+||||+|+ ..|     ++|++++.+ ++.+|.+|+||||+|+..
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~--g~~in~~d~~g~TpL~~A~-~~g~~~iv~~Ll~~gad-i~~~~~~g~t~L~~A~~~   76 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAA-RAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARI   76 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHH-HHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHc
Confidence            3999999999999999999998  6688999999999999999 999     899998865 688899999999999999


Q ss_pred             CCCchHHHHHH----------------------------------------------------cccCCHHHHHHHHHcCC
Q 043183          116 GHKDMPICMVS----------------------------------------------------MNMLLPDVALQLCRDRP  143 (564)
Q Consensus       116 g~~~iv~~Ll~----------------------------------------------------~~~~~~~i~~~Ll~~~~  143 (564)
                      |+.+++++|+.                                                    ...++.++++.|++.+.
T Consensus        77 g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~  156 (408)
T d1n11a_          77 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA  156 (408)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999986                                                    23456788999998876


Q ss_pred             ccccccCCCCCcHHHHHHhCCCCC-----ccc------ccccccc------------hHHHHhh------------hcCC
Q 043183          144 KLATLRAGDCETPLHALARKNLTS-----SNF------INQNQRG------------IFRRCFN------------LGAE  188 (564)
Q Consensus       144 ~~~~~~d~~G~TpLh~Aa~~g~~~-----~~f------~~~~~~~------------~~~~~~~------------~~~~  188 (564)
                      +. +..+.+|.+|||+|+..|+.+     ...      .......            ....+..            .+..
T Consensus       157 ~~-~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l  235 (408)
T d1n11a_         157 HP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  235 (408)
T ss_dssp             CT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CC-CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHH
Confidence            65 678889999999999888754     100      0000000            0000000            0001


Q ss_pred             cHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccc----------
Q 043183          189 DVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFES----------  258 (564)
Q Consensus       189 h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~----------  258 (564)
                      +.++. ....++++.+..     .....+..|..|.||||.|+..++.+++++|+++++++.........          
T Consensus       236 ~~a~~-~~~~~~~~~~~~-----~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~  309 (408)
T d1n11a_         236 HLAAQ-EGHAEMVALLLS-----KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN  309 (408)
T ss_dssp             HHHHH-TTCHHHHHHHHT-----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSC
T ss_pred             HHHHH-hCcHhHhhhhhc-----cccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCc
Confidence            11111 112233333321     23344556677778888888888888888887777665332211100          


Q ss_pred             ---hH---------HHh-hcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHHH
Q 043183          259 ---SG---------AHL-QTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTKE  323 (564)
Q Consensus       259 ---i~---------n~~-~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~~  323 (564)
                         +.         |.. .+|+||||+|++.|+.+++++|           +++   ....+.+|.+|+||.++..+.
T Consensus       310 ~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~L-----------l~~---GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         310 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL-----------LKN---GASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----------HHT---TCCSCCCCSSSCCHHHHHHHT
T ss_pred             ceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHH-----------HHC---CCCCCCCCCCCCCHHHHHHHc
Confidence               00         112 7899999999999998888876           222   233556899999999986553

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1.7e-26  Score=216.68  Aligned_cols=202  Identities=19%  Similarity=0.189  Sum_probs=164.5

Q ss_pred             HHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHh
Q 043183           18 WAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMK   92 (564)
Q Consensus        18 ~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~   92 (564)
                      .|+|+.|++++++ ++...|.+|.||||+||+.|+.+++++|++.  +.+++.+|..+.+++|.++ ..+     .....
T Consensus         2 ~~~v~~Ll~~g~d-in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~--g~~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~   77 (209)
T d1ot8a_           2 AQVISDLLAQGAE-LNATMDKTGETSLHLAARFARADAAKRLLDA--GADANSQDNTGRTPLHAAV-AADAMGVFQILLR   77 (209)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHT
T ss_pred             HHHHHHHHHCCCC-cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhh--ccccccccccccccccccc-ccccccccccccc
Confidence            4899999999887 4455688999999999999999999999998  5678889999999999999 777     23333


Q ss_pred             cCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCccccc
Q 043183           93 HNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFIN  172 (564)
Q Consensus        93 ~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~  172 (564)
                      ............|.++.+.+.........+.|.+              .+ ...+.+|..|.||||+++..+..      
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--------------~~-~~~~~~~~~~~t~l~~~~~~~~~------  136 (209)
T d1ot8a_          78 NRATNLNARMHDGTTPLILAARLAIEGMVEDLIT--------------AD-ADINAADNSGKTALHWAAAVNNT------  136 (209)
T ss_dssp             CTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHH--------------TT-CCTTCBCTTSCBHHHHHHHTTCH------
T ss_pred             ccccccccccccccccccccccccchhhhhhhhh--------------hc-ccccccCCCCCCcchhhcccCcc------
Confidence            3333344556678899999998888888887753              33 33477899999999999999854      


Q ss_pred             ccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccc
Q 043183          173 QNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHIS  252 (564)
Q Consensus       173 ~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~  252 (564)
                                                +++..+.+     .+.+++..|..|.||||+|+..|+.+++++|+++|+++...
T Consensus       137 --------------------------~~~~~l~~-----~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~  185 (209)
T d1ot8a_         137 --------------------------EAVNILLM-----HHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREIT  185 (209)
T ss_dssp             --------------------------HHHHHHHH-----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             --------------------------eeeeeecc-----ccccccccccccccccchhccccHHHHHHHHHHCCCCCCCc
Confidence                                      45555433     33457788999999999999999999999999999997443


Q ss_pred             cccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183          253 YRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       253 ~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      .          .+|+||||+|++.|+.+++++|
T Consensus       186 d----------~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         186 D----------HMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             C----------TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             C----------CCCCCHHHHHHHcCCHHHHhhc
Confidence            3          8999999999999999888765

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=2e-26  Score=225.50  Aligned_cols=189  Identities=13%  Similarity=0.125  Sum_probs=153.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCc-ccccCCCCCCCcHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEA-EDLAKPNKHGGTALS   80 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~l~~~d~~G~TpLH   80 (564)
                      |..|+||||+|++.|+.++++.|++.+.+ + ...|.+|.||||+|+..++.++++.+...... ..++..+..+.++.+
T Consensus        71 d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad-~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  148 (277)
T d2fo1e1          71 DCDENTPLMLAVLARRRRLVAYLMKAGAD-P-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM  148 (277)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-S-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred             CCCCCeeeccccccccccccccccccccc-c-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHH
Confidence            57899999999999999999999998776 3 44588999999999999999999999866311 246778889999999


Q ss_pred             HHHHhch--------HHHHhcC-------cccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCcc
Q 043183           81 MLLHLEG--------RVMMKHN-------RSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKL  145 (564)
Q Consensus        81 ~Aa~~~G--------~~Ll~~~-------~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~  145 (564)
                      .+. ..+        ..+.+..       .......+..|.||||+++..++.+++++++              ...+..
T Consensus       149 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l--------------~~~~~~  213 (277)
T d2fo1e1         149 IVA-HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV--------------GEKGSN  213 (277)
T ss_dssp             HHH-HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH--------------HHSCCC
T ss_pred             HHH-hcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccc--------------cccccc
Confidence            999 766        2222221       1223456778999999999999999888764              355556


Q ss_pred             ccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCch
Q 043183          146 ATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGA  225 (564)
Q Consensus       146 ~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~T  225 (564)
                      .+.+|..|+||||+|+..|+.                                ++++.|++     .+.+++.+|.+|+|
T Consensus       214 ~~~~d~~g~tpL~~A~~~g~~--------------------------------~iv~~Ll~-----~gadin~~d~~G~T  256 (277)
T d2fo1e1         214 KDKQDEDGKTPIMLAAQEGRI--------------------------------EVVMYLIQ-----QGASVEAVDATDHT  256 (277)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCH--------------------------------HHHHHHHH-----TTCCSSCCCSSSCC
T ss_pred             ccccCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHH-----CcCCCCCcCCCCCC
Confidence            678999999999999999965                                67777755     35678899999999


Q ss_pred             HHHHHHHcCCHHHHHHHHH
Q 043183          226 LIFDAAKQGNVGFLLILTR  244 (564)
Q Consensus       226 pLh~Aa~~g~~~iv~~LL~  244 (564)
                      |||+|+++|+.++|++|++
T Consensus       257 ~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         257 ARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-27  Score=225.14  Aligned_cols=191  Identities=14%  Similarity=0.048  Sum_probs=155.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhC---ccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVY---EGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALS   80 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~---~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH   80 (564)
                      +|+||||+|+..|+.++++.+++..   ...+ ...|.+|+||||+||..|+.+++++|++.  +.+++.+|..|.||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~--g~d~~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCccccccccccccccccccccc--cccccccccccccccc
Confidence            5999999999999987776655432   2234 34688999999999999999999999988  6688899999999999


Q ss_pred             HHHHhch-----HHHHhcC-----cccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccC
Q 043183           81 MLLHLEG-----RVMMKHN-----RSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRA  150 (564)
Q Consensus        81 ~Aa~~~G-----~~Ll~~~-----~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d  150 (564)
                      +|+ ..|     +.++...     ..........|.||||.|+..++.+++++|+              +.+.......+
T Consensus        78 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~--------------~~~~~~~~~~~  142 (221)
T d1iknd_          78 LAC-EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV--------------SLGADVNAQEP  142 (221)
T ss_dssp             HHH-HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHH--------------HHTCCTTCCCT
T ss_pred             ccc-ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeec--------------ccCcccccccc
Confidence            999 888     5555543     2334456667999999999999999999875              46666656677


Q ss_pred             CCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHH
Q 043183          151 GDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDA  230 (564)
Q Consensus       151 ~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~A  230 (564)
                      .+|.||||+|++.|+.                                ++++.|++     .+.+++.+|.+|+||||+|
T Consensus       143 ~~G~T~L~~A~~~g~~--------------------------------~~v~~Ll~-----~gad~~~~~~~G~tpl~~A  185 (221)
T d1iknd_         143 CNGRTALHLAVDLQNP--------------------------------DLVSLLLK-----CGADVNRVTYQGYSPYQLT  185 (221)
T ss_dssp             TTCCCHHHHHHHTTCH--------------------------------HHHHHHHT-----TTCCSCCCCTTCCCGGGGC
T ss_pred             cCCCCccccccccccH--------------------------------HHHHHHHh-----cCCcccccCCCCCCHHHHH
Confidence            8899999999999965                                56666643     4567889999999999999


Q ss_pred             HHcCCHHHHHHHHHhCCCc
Q 043183          231 AKQGNVGFLLILTREYPNL  249 (564)
Q Consensus       231 a~~g~~~iv~~LL~~~~~~  249 (564)
                      ++.++.+++++|++...+.
T Consensus       186 ~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         186 WGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             TTSSCHHHHHHHHTTSCGG
T ss_pred             HHCCCHHHHHHHHHcCCcc
Confidence            9999999999999886653

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=2.5e-26  Score=227.01  Aligned_cols=263  Identities=17%  Similarity=0.145  Sum_probs=184.9

Q ss_pred             HcCCHHHHHHHHHhCcccc-------ccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhc
Q 043183           14 LNGDWAVAKSIYDVYEGEI-------GIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLE   86 (564)
Q Consensus        14 ~~G~~~~v~~Ll~~~~~~l-------~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~   86 (564)
                      ++...+.++..........       ....+.++.||||.||+.|+.++|++||+.  +.+++.+|.+|.||||+|+ ..
T Consensus         7 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~--Gadvn~~d~~G~T~L~~A~-~~   83 (291)
T d1s70b_           7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQAC-ID   83 (291)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHH-HT
T ss_pred             hHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcHHHHHH-hc
Confidence            3444566666666543311       011234467999999999999999999998  6788999999999999999 99


Q ss_pred             h-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 043183           87 G-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALA  161 (564)
Q Consensus        87 G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa  161 (564)
                      |     +.|++.+.+ ....+..+.||||.|+..++.++++.|++              .+ ......|.+|.+|+++|+
T Consensus        84 g~~eiv~~Ll~~~~~-~~~~~~~~~~~L~~a~~~~~~~~~~~l~~--------------~~-~~~~~~~~~~~~~~~~a~  147 (291)
T d1s70b_          84 DNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLIS--------------QG-AHVGAVNSEGDTPLDIAE  147 (291)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH--------------TT-CCTTCCCTTSCCHHHHCC
T ss_pred             CCceeeeeecccccc-cccccccccccccccccccccchhhcccc--------------cC-cccccccccCcccccccc
Confidence            9     888888765 46678889999999999999999998863              33 334678999999999999


Q ss_pred             hCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHH
Q 043183          162 RKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLI  241 (564)
Q Consensus       162 ~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~  241 (564)
                      ..+..          ..+..+..........................+..........+..|.||||.|+..|+.++++.
T Consensus       148 ~~~~~----------~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~  217 (291)
T d1s70b_         148 EEAME----------ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL  217 (291)
T ss_dssp             SHHHH----------HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred             ccccc----------hhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcc
Confidence            87743          12222222222222211111111111111111111222334567789999999999999999999


Q ss_pred             HHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhH
Q 043183          242 LTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFT  321 (564)
Q Consensus       242 LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~  321 (564)
                      |++.++++....          .+|+||||+|++.|+.+++++|           ++   .....+.+|.+|+||.++..
T Consensus       218 Ll~~g~din~~~----------~~g~TpL~~A~~~g~~~iv~lL-----------l~---~Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         218 LIQARYDVNIKD----------YDGWTPLHAAAHWGKEEACRIL-----------VE---NLCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             HHTTTCCTTCCC----------TTCCCHHHHHHHTTCHHHHHHH-----------HH---TTCCTTCCCTTSCCTTTSCC
T ss_pred             cccceecccccc----------cCCCCHHHHHHHcCCHHHHHHH-----------HH---CCCCCCCcCCCCCCHHHHHH
Confidence            999999874333          8999999999999999988876           22   22345678899999999986


Q ss_pred             HHhhhhHH
Q 043183          322 KEHKDLRE  329 (564)
Q Consensus       322 ~~~~~l~~  329 (564)
                      +...++.+
T Consensus       274 e~~~~~L~  281 (291)
T d1s70b_         274 EDILGYLE  281 (291)
T ss_dssp             SGGGHHHH
T ss_pred             HHHHHHHH
Confidence            64444443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.2e-27  Score=224.34  Aligned_cols=190  Identities=13%  Similarity=0.085  Sum_probs=147.0

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcC--CcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHH
Q 043183           39 RGDTALRIAAAGKYIEFLKELVKIM--EAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDV  111 (564)
Q Consensus        39 ~g~TpLh~Aa~~g~~~iv~~Ll~~~--~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~  111 (564)
                      +|+||||+|+..|+.++++.|++..  .+.+++.+|.+|+||||+|+ ..|     +.|++.+.+ ++.+|..|.||||.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~-~~~~~~iv~~L~~~g~d-~~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV-ITNQPEIAEALLGAGCD-PELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHH-HTTCHHHHHCCCSCCCC-SCCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccc-ccccccccccccccccc-cccccccccccccc
Confidence            5999999999999987766666543  25678999999999999999 999     666676654 57889999999999


Q ss_pred             HHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHH
Q 043183          112 AASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVE  191 (564)
Q Consensus       112 Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~  191 (564)
                      |+..|+.++++.|++...         .............+|.||||.|+..++.                         
T Consensus        79 ~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~t~l~~a~~~~~~-------------------------  124 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCT---------TPHLHSILKATNYNGHTCLHLASIHGYL-------------------------  124 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTT---------TTSSSCGGGCCCTTCCCHHHHHHHTTCH-------------------------
T ss_pred             ccccccccccchhhhhcc---------cccccccccccccccchhhhHHhhcCCh-------------------------
Confidence            999999999998865111         0012233355667899999999999854                         


Q ss_pred             HHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHH
Q 043183          192 VQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILH  271 (564)
Q Consensus       192 v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLh  271 (564)
                             +++..++...    .......+.+|.||||+|++.|+.+++++|+++|+|+....          .+|+||||
T Consensus       125 -------~~~~~l~~~~----~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~----------~~G~tpl~  183 (221)
T d1iknd_         125 -------GIVELLVSLG----ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT----------YQGYSPYQ  183 (221)
T ss_dssp             -------HHHHHHHHHT----CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC----------TTCCCGGG
T ss_pred             -------hheeeecccC----cccccccccCCCCccccccccccHHHHHHHHhcCCcccccC----------CCCCCHHH
Confidence                   4555554432    11222345679999999999999999999999999984443          89999999


Q ss_pred             HHHhcCCCCccccc
Q 043183          272 LAAMLPPQDRLNIV  285 (564)
Q Consensus       272 lAa~~~~~~~~~~l  285 (564)
                      +|++.++.++++.|
T Consensus       184 ~A~~~~~~~~~~~l  197 (221)
T d1iknd_         184 LTWGRPSTRIQQQL  197 (221)
T ss_dssp             GCTTSSCHHHHHHH
T ss_pred             HHHHCCCHHHHHHH
Confidence            99999998877655

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.8e-25  Score=216.57  Aligned_cols=205  Identities=16%  Similarity=0.099  Sum_probs=169.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183            3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML   82 (564)
Q Consensus         3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A   82 (564)
                      ..|+||||.|+..|+.++++.|++.++..  ...+..+.+|.+.|+..+..+.....++..  .+....+..|.|+++.|
T Consensus        37 ~~g~tpL~~A~~~~~~eiv~~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~a  112 (285)
T d1wdya_          37 EGGWTPLHNAVQMSREDIVELLLRHGADP--VLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVNECDFYGFTAFMEA  112 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCBCTTCCBHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHhhhhccccccc--cccccccchhhHHHhhcCCccccchhhhhc--ccccccccCCCchhHHH
Confidence            46899999999999999999999987763  345678899999999999999999999883  34455788999999999


Q ss_pred             HHhch-----HHHHhcCc---------ccccccCCCCCcHHHHHHHcCCCchHHHHHH----------------------
Q 043183           83 LHLEG-----RVMMKHNR---------SIAMVRDHNQTLPIDVAASLGHKDMPICMVS----------------------  126 (564)
Q Consensus        83 a~~~G-----~~Ll~~~~---------~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~----------------------  126 (564)
                      + ..|     +.++....         ......+..|.||||+|+..|+.+++++|++                      
T Consensus       113 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~  191 (285)
T d1wdya_         113 A-VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL  191 (285)
T ss_dssp             H-HTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHH
T ss_pred             H-HhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccc
Confidence            9 898     33443322         2233456679999999999999999999996                      


Q ss_pred             --cccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHH
Q 043183          127 --MNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERL  204 (564)
Q Consensus       127 --~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l  204 (564)
                        ...+..++++.|++++.+. +.+|.+|.||||+|++.|+.                                ++++.+
T Consensus       192 ~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~--------------------------------~~v~~l  238 (285)
T d1wdya_         192 SSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHL--------------------------------GLVQRL  238 (285)
T ss_dssp             CSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCH--------------------------------HHHHHH
T ss_pred             cccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcH--------------------------------HHHHHH
Confidence              1223346889999987775 77899999999999999954                                566665


Q ss_pred             HHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183          205 CGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNL  249 (564)
Q Consensus       205 ~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~  249 (564)
                          +...+.+++.+|.+|.||||+|+++|+.++|++||++|+++
T Consensus       239 ----L~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~  279 (285)
T d1wdya_         239 ----LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             ----HHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             ----HHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence                44567789999999999999999999999999999999998

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.2e-25  Score=214.01  Aligned_cols=192  Identities=15%  Similarity=0.096  Sum_probs=162.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccc-cccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGE-IGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALS   80 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~-l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH   80 (564)
                      |.+|+||||.|+..|+.++++.|++.+++. .....+..|.||+|+|+..+..++++.++......+....+..+.||++
T Consensus        31 d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  110 (229)
T d1ixva_          31 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH  110 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            678999999999999999999999986542 2244678899999999999999999999988655567778889999999


Q ss_pred             HHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCc
Q 043183           81 MLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCET  155 (564)
Q Consensus        81 ~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~T  155 (564)
                      .++ ..+     +.+++.+.. ...+|.+|+||||+|+..|+.+++++|+              +.++...+.+|.+|+|
T Consensus       111 ~~~-~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll--------------~~~~~~in~~d~~g~T  174 (229)
T d1ixva_         111 LAV-GKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLC--------------GLGKSAVNWQDKQGWT  174 (229)
T ss_dssp             HHH-HTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHH--------------TTTCCCSCCCCTTSCC
T ss_pred             ccc-ccchhhhhhhhhhhccc-ccccCCCCCCccchhhhccccccccccc--------------ccccccccccccccCC
Confidence            999 888     566666543 5778899999999999999999999885              4666777889999999


Q ss_pred             HHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCC
Q 043183          156 PLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGN  235 (564)
Q Consensus       156 pLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~  235 (564)
                      |||+|+..|+.                                ++++.|++    ..+.+++.+|.+|+||||+|+.   
T Consensus       175 pLh~A~~~~~~--------------------------------~~v~~Ll~----~~gad~~~~d~~g~t~l~~A~~---  215 (229)
T d1ixva_         175 PLFHALAEGHG--------------------------------DAAVLLVE----KYGAEYDLVDNKGAKAEDVALN---  215 (229)
T ss_dssp             HHHHHHHTTCH--------------------------------HHHHHHHH----HHCCCSCCCCTTSCCTGGGCSC---
T ss_pred             chhhhcccccH--------------------------------HHHHHHHH----hcCCCCCCcCCCCCCHHHHHhh---
Confidence            99999999965                                56666654    2356788899999999999984   


Q ss_pred             HHHHHHHHHhCCC
Q 043183          236 VGFLLILTREYPN  248 (564)
Q Consensus       236 ~~iv~~LL~~~~~  248 (564)
                      .+++++|+++|+|
T Consensus       216 ~~~~~~Ll~~g~d  228 (229)
T d1ixva_         216 EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCC
Confidence            5899999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=5.3e-27  Score=238.57  Aligned_cols=233  Identities=14%  Similarity=0.050  Sum_probs=149.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHH---HHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCC--CCCCC
Q 043183            2 TRSRRLQTYRAALNGDWAVAKS---IYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKP--NKHGG   76 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~---Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~--d~~G~   76 (564)
                      +..|.||||.||++|+.++++.   |++.+.. + ...|.+|.||||+||+.||.++|++|++.+  .+++..  +.+|+
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g--~~~~~~~~~~~g~  162 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEI-V-KVIQAENYQAFRLAAENGHLHVLNRLCELA--PTEIMAMIQAENY  162 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-C-C--CHHHHHHHHHHHHTTCHHHHHHHHHSC--TTTHHHHHSHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-c-cccCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCccccccccCCC
Confidence            4578999999999999887766   5555543 3 446889999999999999999999999984  444443  45799


Q ss_pred             cHHHHHHHhch-----HHHHhcCccc--ccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCcccccc
Q 043183           77 TALSMLLHLEG-----RVMMKHNRSI--AMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLR  149 (564)
Q Consensus        77 TpLH~Aa~~~G-----~~Ll~~~~~~--~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~  149 (564)
                      ||||+|| ..|     ++|++.++..  .+..+.+|.||+|.|+..|+.+++++|++...+   +-...  .   .....
T Consensus       163 t~L~~Aa-~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~---~~~~~--~---~~~~~  233 (346)
T d2ajaa1         163 HAFRLAA-ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---LAYAE--I---HEFEY  233 (346)
T ss_dssp             HHHHHHH-HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH---HHHHH--H---CTTTT
T ss_pred             ChhHHHH-HHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC---cchHH--H---HHHHc
Confidence            9999999 999     8999887643  344556678899999999999999999752110   00000  0   00011


Q ss_pred             CCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhh----ccCChhhHhhhhcCCch
Q 043183          150 AGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKV----ALLSDSEISRLISKPGA  225 (564)
Q Consensus       150 d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~----l~~~~~~~~~~d~~G~T  225 (564)
                      ...+.+|++.+...+..                                ++...+....    .+............+.+
T Consensus       234 ~~~~~~~~~~~~~~~~~--------------------------------~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  281 (346)
T d2ajaa1         234 GEKYVNPFIARHVNRLK--------------------------------EMHDAFKLSNPDGVFDLVTKSECLQGFYMLR  281 (346)
T ss_dssp             TTTTHHHHHHHHHHHHH--------------------------------HHHTTTTTTSSSSCCCCSSHHHHHHHHHHHH
T ss_pred             CcHhhhHHHHHhhccch--------------------------------HHHHHHHHhcccccHhHHhcccccccchhhh
Confidence            12222333333322210                                0000000000    00011122233344578


Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHh-hcCCchHHHHHhcCCCCccccc
Q 043183          226 LIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHL-QTRNNILHLAAMLPPQDRLNIV  285 (564)
Q Consensus       226 pLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~-~~G~TpLhlAa~~~~~~~~~~l  285 (564)
                      +||.|+..|+.+++++|++.+........      +.. .+|+||||+|++.|+.+++++|
T Consensus       282 ~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~------~~~~~~g~T~LhlA~~~Gn~e~v~lL  336 (346)
T d2ajaa1         282 NLIRRNDEVLLDDIRFLLSIPGIKALAPT------ATIPGDANELLRLALRLGNQGACALL  336 (346)
T ss_dssp             HHHHHCCGGGHHHHHHHHTSTTTGGGSSC------CSSTTCCCHHHHHHHHHTCTTHHHHH
T ss_pred             HHHHHhcCChHHHHHHHHhCcChhhhccc------ccCCCCCCcHHHHHHHcCcHHHHHHH
Confidence            99999999999999999987654321110      111 6799999999999999999887

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3e-24  Score=213.77  Aligned_cols=190  Identities=11%  Similarity=0.078  Sum_probs=129.6

Q ss_pred             cccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch--------HHHHhcCcccccccCC
Q 043183           32 IGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG--------RVMMKHNRSIAMVRDH  103 (564)
Q Consensus        32 l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G--------~~Ll~~~~~~~~~~d~  103 (564)
                      ++...|.+|+||||+||..|+.++|++|++.  +++++.+|..|+||||.|| ..|        ..+++........+|.
T Consensus        99 vn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~-~~~~~~~~~~~~~ll~~l~~~~~~~d~  175 (301)
T d1sw6a_          99 LNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAV-KSVNNYDSGTFEALLDYLYPCLILEDS  175 (301)
T ss_dssp             SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHH-HSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred             cCcCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCcCCcccccHHHHhh-hcccchhhhhHHHHHHHHhhhhhhccc
Confidence            3334588999999999999999999999998  6789999999999999999 865        3455554455677899


Q ss_pred             CCCcHHHHHHHcCCC----chHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchH
Q 043183          104 NQTLPIDVAASLGHK----DMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIF  179 (564)
Q Consensus       104 ~G~TpLh~Aa~~g~~----~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~  179 (564)
                      .|+||||.|+..+..    +++++.++      .++..+++.........+..+.++++.+......             
T Consensus       176 ~g~t~lh~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  236 (301)
T d1sw6a_         176 MNRTILHHIIITSGMTGCSAAAKYYLD------ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD-------------  236 (301)
T ss_dssp             TCCCHHHHHHHHHTSTTCHHHHHHHHH------HHHHHHHHGGGCCEEEC----------------C-------------
T ss_pred             ccCCHHHHHHHHhCccccHHHHHHHHH------HHHHHHHhcCCcchhcccccccchhHHHHhcchH-------------
Confidence            999999999876553    44554432      3445566666666566677778888877665533             


Q ss_pred             HHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccch
Q 043183          180 RRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESS  259 (564)
Q Consensus       180 ~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i  259 (564)
                               .  ...   ...+..++       ...+|.+|.+|+||||+||++|+.++|++|+++|+++...+      
T Consensus       237 ---------~--~~~---~~~~~~~~-------~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n------  289 (301)
T d1sw6a_         237 ---------S--ILE---NLDLKWII-------ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN------  289 (301)
T ss_dssp             ---------H--HHH---HCSHHHHH-------HHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC------
T ss_pred             ---------H--HHH---HHhhHHHH-------hcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC------
Confidence                     0  000   00011111       12367889999999999999999999999999999984443      


Q ss_pred             HHHhhcCCchHHHHH
Q 043183          260 GAHLQTRNNILHLAA  274 (564)
Q Consensus       260 ~n~~~~G~TpLhlAa  274 (564)
                          ++|+||||+|+
T Consensus       290 ----~~G~Tpl~~A~  300 (301)
T d1sw6a_         290 ----KSGLRPVDFGA  300 (301)
T ss_dssp             ----TTSCCGGGGTC
T ss_pred             ----CCCCCHHHHcC
Confidence                89999999996

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=1.4e-22  Score=189.65  Aligned_cols=184  Identities=15%  Similarity=0.086  Sum_probs=150.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM   81 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~   81 (564)
                      |.+|+||||+||+.|+.++++.|++.++..  ...+..+.+++|.++..++.+......... ..........|.++.+.
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~--n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   96 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAGADA--NSQDNTGRTPLHAAVAADAMGVFQILLRNR-ATNLNARMHDGTTPLIL   96 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTCCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhcccc--cccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            457999999999999999999999987763  446888999999999999998887777653 33445566678899988


Q ss_pred             HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183           82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP  156 (564)
Q Consensus        82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp  156 (564)
                      +. ...     +.|...+. ..+.+|..|.||||+|+..+..++++.+++              ...+ .+..|.+|.||
T Consensus        97 ~~-~~~~~~~~~~L~~~~~-~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~--------------~~~~-~~~~d~~g~Tp  159 (209)
T d1ot8a_          97 AA-RLAIEGMVEDLITADA-DINAADNSGKTALHWAAAVNNTEAVNILLM--------------HHAN-RDAQDDKDETP  159 (209)
T ss_dssp             HH-HTTCTTHHHHHHHTTC-CTTCBCTTSCBHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTCCCH
T ss_pred             cc-cccchhhhhhhhhhcc-cccccCCCCCCcchhhcccCcceeeeeecc--------------cccc-ccccccccccc
Confidence            87 666     55555554 357789999999999999999999988753              4433 47789999999


Q ss_pred             HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183          157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV  236 (564)
Q Consensus       157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~  236 (564)
                      ||+|+..|+.                                ++++.|++     .+.+++.+|..|+||||+|+++|+.
T Consensus       160 L~~A~~~g~~--------------------------------~~v~~Ll~-----~gad~n~~d~~g~Tpl~~A~~~~~~  202 (209)
T d1ot8a_         160 LFLAAREGSY--------------------------------EASKALLD-----NFANREITDHMDRLPRDVASERLHH  202 (209)
T ss_dssp             HHHHHHTTCH--------------------------------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cchhccccHH--------------------------------HHHHHHHH-----CCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            9999999965                                66666654     3457888999999999999999999


Q ss_pred             HHHHHH
Q 043183          237 GFLLIL  242 (564)
Q Consensus       237 ~iv~~L  242 (564)
                      ++|++|
T Consensus       203 ~iv~lL  208 (209)
T d1ot8a_         203 DIVRLL  208 (209)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            999976

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.7e-23  Score=182.44  Aligned_cols=111  Identities=19%  Similarity=0.215  Sum_probs=68.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhc
Q 043183            7 LQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLE   86 (564)
Q Consensus         7 t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~   86 (564)
                      +|||.||..|+.++|+.|++++.+ + ...|.+|.||||+|+ .|+.+++++|++.  +.+++.++..|.+||+.++ ..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~--~a~~~~~~~~~~~~l~~~~-~~   76 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN-V-NAQNGFGRTALQVMK-LGNPEIARRLLLR--GANPDLKDRTGFAVIHDAA-RA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC-T-TCCCTTSCCHHHHCC-SSCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-c-CccCCcccccccccc-ccccccccccccc--ccccccccccCcccccccc-cc
Confidence            677788888888888877777655 2 335777778877665 5777777777776  4456666666666666666 55


Q ss_pred             h-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHH
Q 043183           87 G-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICM  124 (564)
Q Consensus        87 G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~L  124 (564)
                      |     +.+++.+.+ .+..|..|.+|||+|+..++.+++++|
T Consensus        77 ~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~L  118 (156)
T d1ihba_          77 GFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFL  118 (156)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccccccc
Confidence            5     334433332 234445555555555555555555444

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2e-22  Score=180.19  Aligned_cols=139  Identities=20%  Similarity=0.212  Sum_probs=119.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHh
Q 043183            6 RLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHL   85 (564)
Q Consensus         6 ~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~   85 (564)
                      .+.||.||..|+.++|+.|+++++..+ ...|..|.||||+|+. |+.+++++|++.  +.+++..+..|.+|++.|+ .
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~-n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~--~~~~~~~~~~~~~~l~~~~-~   77 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQVMMF-GSTAIALELLKQ--GASPNVQDTSGTSPVHDAA-R   77 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHHSCT-TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-H
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCC-CccCCCCCcccccccc-cccccccccccc--ccccccccccccccccccc-c
Confidence            356999999999999999999876655 4468999999999874 889999999998  5678889999999999999 8


Q ss_pred             ch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHH
Q 043183           86 EG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHAL  160 (564)
Q Consensus        86 ~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~A  160 (564)
                      .+     +.+++.+++ ++.+|.+|+||||+||..|+.+++++|+               .+.+ .+.+|.+|+||||+|
T Consensus        78 ~~~~~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~---------------~~~~-~~~~d~~G~TpL~~A  140 (156)
T d1bd8a_          78 TGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLA---------------AESD-LHRRDARGLTPLELA  140 (156)
T ss_dssp             TTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHH---------------TTSC-TTCCCTTSCCHHHHH
T ss_pred             cccccccccccccccc-cccccCCCCeeecccccccccccccccc---------------cccc-ccccCCCCCCHHHHH
Confidence            88     777887765 5778999999999999999999999874               3333 478899999999999


Q ss_pred             HhCCCC
Q 043183          161 ARKNLT  166 (564)
Q Consensus       161 a~~g~~  166 (564)
                      ++.|+.
T Consensus       141 ~~~g~~  146 (156)
T d1bd8a_         141 LQRGAQ  146 (156)
T ss_dssp             HHSCCH
T ss_pred             HHcCCH
Confidence            999964

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.7e-22  Score=178.79  Aligned_cols=121  Identities=20%  Similarity=0.138  Sum_probs=106.9

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch----HHHHhcCcccccccCCCCCcHHHHHHHcCC
Q 043183           42 TALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG----RVMMKHNRSIAMVRDHNQTLPIDVAASLGH  117 (564)
Q Consensus        42 TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~  117 (564)
                      +|||+||..|+.++|+.|++.  +.+++.+|..|.||||+|+ ...    +.|++.+.+ ++..+..|.+||+.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~--g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCcCccCCcccccccccc-cccccccccccccccc-cccccccCcccccccccccc
Confidence            899999999999999999998  6788999999999999877 533    888888765 57888999999999999999


Q ss_pred             CchHHHHHH-------------------cccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCC
Q 043183          118 KDMPICMVS-------------------MNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLT  166 (564)
Q Consensus       118 ~~iv~~Ll~-------------------~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~  166 (564)
                      .+.+++|++                   +..++.++++.|+++++...+.+|.+|+||||+|++.++.
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~  146 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN  146 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCH
Confidence            999999987                   4567889999999999877789999999999999999964

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-22  Score=180.71  Aligned_cols=148  Identities=22%  Similarity=0.263  Sum_probs=126.1

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch----HHHHhcCcccccccCCCCCcHHHHHHHcCC
Q 043183           42 TALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG----RVMMKHNRSIAMVRDHNQTLPIDVAASLGH  117 (564)
Q Consensus        42 TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~  117 (564)
                      +.||.||..|+.++|+.|++.. +.+++.+|..|+||||+|+ ..+    +.|++.+.+ ++..+..|.+|++.|+..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhC-CCCCCccCCCCCccccccc-cccccccccccccccc-cccccccccccccccccccc
Confidence            4599999999999999999873 6689999999999999998 655    788887765 57788899999999999999


Q ss_pred             CchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhH
Q 043183          118 KDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQA  197 (564)
Q Consensus       118 ~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~  197 (564)
                      .+++++++              +.+++. +.+|.+|+||||+|+..|+.                               
T Consensus        81 ~~~~~~~l--------------~~~~~~-n~~~~~~~t~L~~A~~~~~~-------------------------------  114 (156)
T d1bd8a_          81 LDTLKVLV--------------EHGADV-NVPDGTGALPIHLAVQEGHT-------------------------------  114 (156)
T ss_dssp             HHHHHHHH--------------HTTCCS-CCCCTTSCCHHHHHHHHTCH-------------------------------
T ss_pred             cccccccc--------------cccccc-ccccCCCCeeeccccccccc-------------------------------
Confidence            99999875              355544 77899999999999999964                               


Q ss_pred             HHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHh
Q 043183          198 LKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTRE  245 (564)
Q Consensus       198 ~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~  245 (564)
                       ++++.|.      .+.+++.+|.+|+||||+|++.|+.+++++|+++
T Consensus       115 -~i~~~L~------~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         115 -AVVSFLA------AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             -HHHHHHH------TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             -ccccccc------ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence             5665543      2456788999999999999999999999999975

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.9e-22  Score=185.37  Aligned_cols=211  Identities=17%  Similarity=0.147  Sum_probs=161.3

Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcC--CcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHH
Q 043183           38 KRGDTALRIAAAGKYIEFLKELVKIM--EAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPID  110 (564)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~--~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh  110 (564)
                      .+|+||||+||..|+.++|+.|++..  .+.+++.+|..|+||||+|+ ..|     +.|++.+.+ .+..+..|.+|++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~-~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV-ITTLPSVVRLLVTAGAS-PMALDRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehh-ccccccccccccccccc-ccccccccccccc
Confidence            36999999999999999999998742  35678999999999999999 999     778887654 5677888999999


Q ss_pred             HHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcH
Q 043183          111 VAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDV  190 (564)
Q Consensus       111 ~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~  190 (564)
                      .|...++.++++.+...           ........+..+..+.+|||.+......                        
T Consensus        79 ~a~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------  123 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDS-----------AAPGTLDLEARNYDGLTALHVAVNTECQ------------------------  123 (228)
T ss_dssp             HHHHTTCHHHHHHHHHH-----------SCTTSCCTTCCCTTSCCHHHHHHHHTCH------------------------
T ss_pred             cccccccccchhhhhhc-----------cccccccccccccccccccccccccccc------------------------
Confidence            99999999988876531           0111222345667888999999887643                        


Q ss_pred             HHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchH
Q 043183          191 EVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNIL  270 (564)
Q Consensus       191 ~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpL  270 (564)
                              .....+..    .........+..|.+|||.|+..+..++++.+++.+.+.....          ..|+|||
T Consensus       124 --------~~~~~l~~----~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d----------~~g~t~L  181 (228)
T d1k1aa_         124 --------ETVQLLLE----RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM----------YSGSSAL  181 (228)
T ss_dssp             --------HHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBC----------TTSCBHH
T ss_pred             --------hhhhhhhc----cccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccccccc----------ccCcchH
Confidence                    22222222    2222334456678999999999999999999999988775443          8899999


Q ss_pred             HHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhH
Q 043183          271 HLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFT  321 (564)
Q Consensus       271 hlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~  321 (564)
                      |+|+..|+.+++++|           +++   ....+.+|.+|+||..+..
T Consensus       182 ~~A~~~g~~~~v~~L-----------l~~---Gad~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         182 HSASGRGLLPLVRTL-----------VRS---GADSSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             HHHHHHTCHHHHHHH-----------HHT---TCCTTCCCTTSCCTTTTCS
T ss_pred             HHHHHcCCHHHHHHH-----------HHC---CCCCCCCCCCCCCHHHHHH
Confidence            999999998887766           222   2345678899999999864

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=4.6e-22  Score=176.69  Aligned_cols=72  Identities=17%  Similarity=0.038  Sum_probs=39.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183            7 LQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL   83 (564)
Q Consensus         7 t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa   83 (564)
                      ||||.||+.|+.++|+.||+++++.  . .|..|.||||+|+..++.++++.++..  +......+..+.+++|.++
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~--~-~~~~g~t~L~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   75 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCc--c-cccCCCccccccccccccccccccccc--ccccccccccccccccccc
Confidence            6666666666666666666665432  1 355666666666666666666666554  2222333444445555544

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.1e-21  Score=172.36  Aligned_cols=107  Identities=14%  Similarity=0.131  Sum_probs=85.2

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch--------------------------------
Q 043183           40 GDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG--------------------------------   87 (564)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G--------------------------------   87 (564)
                      ..||||.||+.|+.++|++||+.+  ++.+ .|..|+||||+|+ ..+                                
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~g--a~~~-~~~~g~t~L~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANG--APFT-TDWLGTSPLHLAA-QYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHT--CCCC-CCTTCCCHHHHHH-HHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcC--CCcc-cccCCCccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            359999999999999999999984  4444 6899999999999 887                                


Q ss_pred             ------HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 043183           88 ------RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALA  161 (564)
Q Consensus        88 ------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa  161 (564)
                            +.+...+. ....+|.+|+||||+|+..|+.+++++|+              +.+.+ ++.+|.+|.||||+|+
T Consensus        78 ~~~~~~~~l~~~~~-~~~~~~~~g~T~L~~A~~~g~~~iv~~ll--------------~~gad-~~~~d~~g~Tpl~~A~  141 (153)
T d1awcb_          78 GHANIVEVLLKHGA-DVNAKDMLKMTALHWATEHNHQEVVELLI--------------KYGAD-VHTQSKFCKTAFDISI  141 (153)
T ss_dssp             TCHHHHHHHHTTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHH--------------HTTCC-TTCCCTTSCCHHHHHH
T ss_pred             ccceeeecccccCC-ccccccccCchHHHhhhhcchhheeeecc--------------ccccC-CcccCCCCCCHHHHHH
Confidence                  23333332 23567888999999999999888888775              45544 4788999999999999


Q ss_pred             hCCCC
Q 043183          162 RKNLT  166 (564)
Q Consensus       162 ~~g~~  166 (564)
                      ..|+.
T Consensus       142 ~~g~~  146 (153)
T d1awcb_         142 DNGNE  146 (153)
T ss_dssp             HTTCH
T ss_pred             HcCCH
Confidence            99954

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=9.5e-22  Score=195.45  Aligned_cols=177  Identities=9%  Similarity=-0.009  Sum_probs=114.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCH---HHHHHHHHcCCcccccCCCCCCCcH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYI---EFLKELVKIMEAEDLAKPNKHGGTA   78 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~---~iv~~Ll~~~~~~~l~~~d~~G~Tp   78 (564)
                      |.+|+||||+||..|+.++|+.|++.+.+ + ...|..|+||||.||..++.   +.++.|++.. ...+..+|..|+||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad-~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l-~~~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSN-R-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL-YPCLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCC-T-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH-GGGGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-C-CcCCcccccHHHHhhhcccchhhhhHHHHHHHH-hhhhhhcccccCCH
Confidence            67899999999999999999999999876 3 44689999999999987763   2233333332 23456678999999


Q ss_pred             HHHHHHhch-----------------HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHc
Q 043183           79 LSMLLHLEG-----------------RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRD  141 (564)
Q Consensus        79 LH~Aa~~~G-----------------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~  141 (564)
                      ||+|+ ..+                 ..++.............+.++++.+........+..+.         ...++..
T Consensus       181 lh~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~  250 (301)
T d1sw6a_         181 LHHII-ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD---------LKWIIAN  250 (301)
T ss_dssp             HHHHH-HHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS---------HHHHHHH
T ss_pred             HHHHH-HHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHh---------hHHHHhc
Confidence            99998 665                 12233333334445556777777777666555554331         1112222


Q ss_pred             CCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhc
Q 043183          142 RPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLIS  221 (564)
Q Consensus       142 ~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~  221 (564)
                         .++.+|.+|+||||+|++.|+.                                ++++.|++     .+++++.+|+
T Consensus       251 ---~in~~D~~G~TpLh~A~~~g~~--------------------------------~iv~~Ll~-----~GAd~~~~n~  290 (301)
T d1sw6a_         251 ---MLNAQDSNGDTCLNIAARLGNI--------------------------------SIVDALLD-----YGADPFIANK  290 (301)
T ss_dssp             ---TTTCCCTTSCCHHHHHHHHCCH--------------------------------HHHHHHHH-----TTCCTTCCCT
T ss_pred             ---CccCCCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHH-----CCCCCCCCCC
Confidence               2467899999999999999965                                56666654     4667889999


Q ss_pred             CCchHHHHHH
Q 043183          222 KPGALIFDAA  231 (564)
Q Consensus       222 ~G~TpLh~Aa  231 (564)
                      .|.||||+|+
T Consensus       291 ~G~Tpl~~A~  300 (301)
T d1sw6a_         291 SGLRPVDFGA  300 (301)
T ss_dssp             TSCCGGGGTC
T ss_pred             CCCCHHHHcC
Confidence            9999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.82  E-value=4.9e-23  Score=208.99  Aligned_cols=203  Identities=15%  Similarity=0.045  Sum_probs=134.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcc-cccCCCCCCCcHHH
Q 043183            2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAE-DLAKPNKHGGTALS   80 (564)
Q Consensus         2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~-~l~~~d~~G~TpLH   80 (564)
                      |..|+||||.||+.|+.++|+.|++.+++......+.+|.||||+||..||.++|++|++.+... +.+..+.+|.||+|
T Consensus       123 ~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~  202 (346)
T d2ajaa1         123 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW  202 (346)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhh
Confidence            45689999999999999999999999876322223457999999999999999999999985322 24455566788889


Q ss_pred             HHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCcc-ccccC----
Q 043183           81 MLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKL-ATLRA----  150 (564)
Q Consensus        81 ~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~-~~~~d----  150 (564)
                      .|+ .+|     ++|++.+.+.        .+|.+.++..++.++..+++....+..+....+....++. ....+    
T Consensus       203 ~A~-~~g~~~iv~~Ll~~ga~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~  273 (346)
T d2ajaa1         203 AAV-GRGHHNVINFLLDCPVML--------AYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC  273 (346)
T ss_dssp             HHS-TTCCHHHHHHHTTSHHHH--------HHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHH
T ss_pred             HHh-hcCHHHHHHHHHhCCCCc--------chHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccc
Confidence            999 888     7777766543        2466666666777777766543222222222222111110 01111    


Q ss_pred             ---CCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHH
Q 043183          151 ---GDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALI  227 (564)
Q Consensus       151 ---~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpL  227 (564)
                         ..+.+||+.|+..|..                                +++++|++..........+..+.+|+|||
T Consensus       274 ~~~~~~~~~l~~a~~~~~l--------------------------------d~v~~Ll~~~~~~~~~~~~~~~~~g~T~L  321 (346)
T d2ajaa1         274 LQGFYMLRNLIRRNDEVLL--------------------------------DDIRFLLSIPGIKALAPTATIPGDANELL  321 (346)
T ss_dssp             HHHHHHHHHHHHHCCGGGH--------------------------------HHHHHHHTSTTTGGGSSCCSSTTCCCHHH
T ss_pred             cccchhhhHHHHHhcCChH--------------------------------HHHHHHHhCcChhhhcccccCCCCCCcHH
Confidence               1234667777766632                                55666654322111222344566799999


Q ss_pred             HHHHHcCCHHHHHHHHHh
Q 043183          228 FDAAKQGNVGFLLILTRE  245 (564)
Q Consensus       228 h~Aa~~g~~~iv~~LL~~  245 (564)
                      |+||+.|+.++|++||+.
T Consensus       322 hlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         322 RLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHcCcHHHHHHHhCC
Confidence            999999999999999964

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5e-20  Score=158.04  Aligned_cols=116  Identities=17%  Similarity=0.149  Sum_probs=101.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCC-cHHHHH
Q 043183            4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGG-TALSML   82 (564)
Q Consensus         4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~-TpLH~A   82 (564)
                      .+.++||.||+.|+.++|+.|++.+.+ + ...|..|.||||+|+ .|+.+++++|++.  +.+++.+|..|. ||||+|
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad-~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGAN-P-NAPNSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRPVHDA   76 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCC-T-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCc-c-ccccccccccccccc-ccccccccccccc--ccccccccccccccccccc
Confidence            467899999999999999999998765 3 446889999999775 7999999999998  567888888776 699999


Q ss_pred             HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      + +.|     +.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++
T Consensus        77 ~-~~g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          77 A-REGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             H-HHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             c-ccccccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9 999     888888755 57899999999999999999999999863

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.1e-19  Score=154.17  Aligned_cols=103  Identities=19%  Similarity=0.207  Sum_probs=67.1

Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHc
Q 043183           41 DTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASL  115 (564)
Q Consensus        41 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~  115 (564)
                      +|||++|++.|+.++|++|++.  +.+++.+|..|+||||+|+ ..|     +.+++.+.+ ++.+|..|+||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~--g~d~n~~~~~g~t~lh~A~-~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT--TCCCCCCSSSSCCTTHHHH-HHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh--hhccccccccccccccccc-cccccccccccccccce-eeecccccccchhhhhhc
Confidence            3566666666666666666655  4455666666666666666 565     555555543 355666777777777777


Q ss_pred             CCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHh
Q 043183          116 GHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALAR  162 (564)
Q Consensus       116 g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~  162 (564)
                      |+.+++++|++              ++.+ ++.+|.+|+||||+|..
T Consensus        79 ~~~~~v~~Ll~--------------~Gad-~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          79 GHVSCVKLLLS--------------KGAD-KTVKGPDGLTALEATDN  110 (118)
T ss_dssp             TCCHHHHHHHT--------------TCCC-SSSSSSSTCCCCCTCSS
T ss_pred             Cchhhhhhhhc--------------cccc-ceeeCCCCCCHHHHHhH
Confidence            88888887753              4433 36778888888887743

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.4e-19  Score=153.88  Aligned_cols=115  Identities=15%  Similarity=0.157  Sum_probs=99.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhc
Q 043183            7 LQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLE   86 (564)
Q Consensus         7 t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~   86 (564)
                      ++||.||..|+.++|+.|++++.+ + ...|.+|.||||+|+..|+.+++++|++.  +.+++.+|.+|+||||+|+ ..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~--g~~~~~~d~~g~tpLh~A~-~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-P-SLPNDEGITALHNAVCAGHTEIVKFLVQF--GVNVNAADSDGWTPLHCAA-SC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-C-CCCCTTSCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHH-HT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-c-ccccccccccccccccccccccccccccc--ccccccccccCcccccccc-hh
Confidence            689999999999999999998776 3 44688999999999999999999999998  5688999999999999999 99


Q ss_pred             h-----HHHHhcCcccccccCCCCCcHHHHH--HHcCCCchHHHHHH
Q 043183           87 G-----RVMMKHNRSIAMVRDHNQTLPIDVA--ASLGHKDMPICMVS  126 (564)
Q Consensus        87 G-----~~Ll~~~~~~~~~~d~~G~TpLh~A--a~~g~~~iv~~Ll~  126 (564)
                      |     +.|++++.++....+..|.||++++  +..|+.+++++|++
T Consensus        78 g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          78 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            9     8999988765444445688887765  57799999999975

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=4.8e-20  Score=156.43  Aligned_cols=110  Identities=20%  Similarity=0.247  Sum_probs=96.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHh
Q 043183            6 RLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHL   85 (564)
Q Consensus         6 ~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~   85 (564)
                      +|||++|++.|+.++|+.|++.+.+ + ...|.+|.||||+|+..|+.+++++|++.  +.+++.+|..|+||||+|+ .
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~--g~din~~d~~g~tpLh~A~-~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-V-NRTLEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAV-Y   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-C-CCCSSSSCCTTHHHHHHSTTTHHHHHHHS--SCTTTCCSSSCSCHHHHHH-T
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-c-ccccccccccccccccccccccccccccc--cceeeecccccccchhhhh-h
Confidence            5899999999999999999998765 3 44688999999999999999999999998  6788999999999999999 9


Q ss_pred             ch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHH
Q 043183           86 EG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMV  125 (564)
Q Consensus        86 ~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll  125 (564)
                      .|     +.|++.+.+ ++.+|.+|.||||+|.    .+.++.||
T Consensus        78 ~~~~~~v~~Ll~~Gad-~~~~d~~G~t~l~~a~----~~~i~~LL  117 (118)
T d1myoa_          78 EGHVSCVKLLLSKGAD-KTVKGPDGLTALEATD----NQAIKALL  117 (118)
T ss_dssp             TTCCHHHHHHHTTCCC-SSSSSSSTCCCCCTCS----STTTGGGG
T ss_pred             cCchhhhhhhhccccc-ceeeCCCCCCHHHHHh----HHHHHHhc
Confidence            99     889988865 5889999999999983    34455543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.4e-18  Score=148.87  Aligned_cols=109  Identities=17%  Similarity=0.230  Sum_probs=92.0

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch----HHHHhcCcccccccCCCCC-cHHHHHH
Q 043183           39 RGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG----RVMMKHNRSIAMVRDHNQT-LPIDVAA  113 (564)
Q Consensus        39 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G----~~Ll~~~~~~~~~~d~~G~-TpLh~Aa  113 (564)
                      .+.++||+||..|+.++|++|++.  +.+++.+|..|.||||+|+ ...    +.|++.+.+ ++.+|..|. ||||+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~--gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAA   77 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHc--CCccccccccccccccccc-cccccccccccccccc-ccccccccccccccccc
Confidence            356899999999999999999988  5788999999999999877 533    888888766 466666665 7999999


Q ss_pred             HcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCC
Q 043183          114 SLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLT  166 (564)
Q Consensus       114 ~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~  166 (564)
                      ..|+.+++++|++              .+.+ .+.+|.+|+||||+|++.|+.
T Consensus        78 ~~g~~~~v~~Ll~--------------~ga~-~~~~d~~G~T~l~~A~~~g~~  115 (125)
T d1bi7b_          78 REGFLDTLVVLHR--------------AGAR-LDVRDAWGRLPVDLAEELGHR  115 (125)
T ss_dssp             HHTCHHHHHHHHH--------------HTCC-SSCCCTTCCCHHHHHHHHTCH
T ss_pred             ccccccccccccc--------------cccc-cccccCCCCCHHHHHHHcCCH
Confidence            9999999998853              5544 478999999999999999954

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.3e-17  Score=147.98  Aligned_cols=116  Identities=19%  Similarity=0.196  Sum_probs=99.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCcccc----ccccCCCCChHHHHHHhc---CCHHHHHHHHHcCCcccccCCCCCCCcHH
Q 043183            7 LQTYRAALNGDWAVAKSIYDVYEGEI----GIAIAKRGDTALRIAAAG---KYIEFLKELVKIMEAEDLAKPNKHGGTAL   79 (564)
Q Consensus         7 t~Lh~Aa~~G~~~~v~~Ll~~~~~~l----~~~~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~l~~~d~~G~TpL   79 (564)
                      ..|+.|++.+++..+..++..+.+..    ....+..|+||||+|++.   |+.++|++|++.  +.+++.+|..|+|||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadin~~d~~g~TpL   85 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCCHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc--CCChhhhhhhhcccc
Confidence            35678899999999999998765421    122367899999999974   688999999998  668999999999999


Q ss_pred             HHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183           80 SMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS  126 (564)
Q Consensus        80 H~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~  126 (564)
                      |+|+ ..|     +.|++.+++ ++.+|.+|+||||+|+..|+.+++++|++
T Consensus        86 h~A~-~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1          86 HYCC-LTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             HHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccc-ccccccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999 999     888888766 58899999999999999999999999976

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.9e-17  Score=142.65  Aligned_cols=107  Identities=17%  Similarity=0.223  Sum_probs=89.0

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcC
Q 043183           42 TALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLG  116 (564)
Q Consensus        42 TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g  116 (564)
                      ++||.||..|+.++|+.|++.  +.+++.+|.+|+||||+|+ ..|     +.+++.+.+ .+.+|.+|+||||+|+..|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~--g~d~n~~d~~g~t~Lh~A~-~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAV-CAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHHHH-HHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHc--CCCcccccccccccccccc-ccccccccccccccccc-cccccccCcccccccchhh
Confidence            689999999999999999998  5688999999999999999 998     788887754 5788999999999999999


Q ss_pred             CCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHH--hCCCC
Q 043183          117 HKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALA--RKNLT  166 (564)
Q Consensus       117 ~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa--~~g~~  166 (564)
                      +.+++++|+              +++.+.....+.+|+||++++.  +.|+.
T Consensus        79 ~~~~v~~Ll--------------~~ga~v~~~~~~~~~~~~~~~~a~~~g~~  116 (130)
T d1ycsb1          79 NVQVCKFLV--------------ESGAAVFAMTYSDMQTAADKCEEMEEGYT  116 (130)
T ss_dssp             CHHHHHHHH--------------HTTCCTTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred             HHHHHHHHH--------------HcCCCcccccCCCCCCHHHHHHHHHcChH
Confidence            999999985              3555553334457899887764  55543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.5e-15  Score=134.39  Aligned_cols=107  Identities=14%  Similarity=0.088  Sum_probs=86.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCc----ccccCCCCCCCcHHHHHHHhch--------HHHHhcCcccccccCCCCCcHHH
Q 043183           43 ALRIAAAGKYIEFLKELVKIMEA----EDLAKPNKHGGTALSMLLHLEG--------RVMMKHNRSIAMVRDHNQTLPID  110 (564)
Q Consensus        43 pLh~Aa~~g~~~iv~~Ll~~~~~----~~l~~~d~~G~TpLH~Aa~~~G--------~~Ll~~~~~~~~~~d~~G~TpLh  110 (564)
                      .|+.|++.+....+..++..+..    ......+..|+||||+|+ +.+        +.|++.+.+ ++.+|.+|+||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~-~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV-RSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHH-HHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHH-HhcCCCCHHHHHHHHHcCCC-hhhhhhhhccccc
Confidence            45678899999999998877421    113344778999999999 764        678888765 5889999999999


Q ss_pred             HHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCC
Q 043183          111 VAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLT  166 (564)
Q Consensus       111 ~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~  166 (564)
                      +||..|+.+++++|+              +++++. +.+|.+|+||||+|++.|+.
T Consensus        87 ~A~~~~~~~~v~~Ll--------------~~gad~-~~~d~~g~tpL~~A~~~~~~  127 (154)
T d1dcqa1          87 YCCLTDNAECLKLLL--------------RGKASI-EIANESGETPLDIAKRLKHE  127 (154)
T ss_dssp             HHHHTTCHHHHHHHH--------------HTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             ccccccccccccccc--------------ccCccc-cccCCCCCCHHHHHHHcCCH
Confidence            999999999999885              355554 88999999999999999964