Citrus Sinensis ID: 043188

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MNSVSNEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccHHccccccccHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHccccccccHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHccHHHHcccccccccHHHHHHHcccHHHHHHHHHcccHHHHccccccccHHHHHHHcccccc
Coil and Loop (DISEMBL)
MNSVSNEIEEaslldnngeisqsqidpNLFKaaaagnlepfKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLlqvnakgdtplhvaakfgHSDIVRVLVEraklpqheneeLESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLtkedpdyqysannygktplymaadyrssnm
Flexible Loop (DISEMBL)
MNSVSNEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLtaktkntilhiniisqerenVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVEraklpqheneelesrvgAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPdyqysannygktplymaadyrssnm
Low Complexity Region (SEG)
MNSVSNEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM
Disordered region (IsUnstruct)
*****************************FKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERA*****************************TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYM*********
Disordered Region (DISOPRED)
**S***EIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVI***LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSS**
Disordered Region (DISEMBL)
*********EASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM
Disordered Region (DISPRO)
********EEASLLDNNGE**QSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSVSNEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHExxxxxxxxxxxxxxxxxxxxxKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.482	0.181	0.330	2e-07
P59672	1150	Ankyrin repeat and SAM do	yes	no	0.634	0.108	0.342	1e-06
P16157	1881	Ankyrin-1 OS=Homo sapiens	yes	no	0.573	0.060	0.318	6e-06
Q9XZC0	1413	Alpha-latrocrustotoxin-Lt	N/A	no	0.771	0.107	0.290	9e-06
Q92625	1134	Ankyrin repeat and SAM do	no	no	0.497	0.086	0.330	2e-05
Q80YE7	1442	Death-associated protein	no	no	0.776	0.106	0.281	3e-05
A5PMU4	1280	Ankyrin repeat and steril	no	no	0.411	0.063	0.386	4e-05
Q02989	1411	Alpha-latroinsectotoxin-L	N/A	no	0.822	0.114	0.27	5e-05
Q8N8A2	993	Serine/threonine-protein	no	no	0.492	0.097	0.292	5e-05
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.436	0.021	0.323	6e-05

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 17/112 (15%)

Query: 78  FVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA 137
            V  +L+K   L     + G T LH AA+ GH+ IV+ L+E+             + G  
Sbjct: 140 IVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEK-------------KAG-- 184

Query: 138 RQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA 189
             M+   + +  TALH AV  QN ++V++L + D     SA+N G TPL++A
Sbjct: 185 --MVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIA 234

Arabidopsis thaliana (taxid: 3702)

>sp|P59672|ANS1A_MOUSE Ankyrin repeat and SAM domain-containing protein 1A OS=Mus musculus GN=Anks1a PE=1 SV=3

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 21/146 (14%)

Query: 57  TKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVL 116
           T  T LH   ++  R+      V E+L +  +L    ++KG  PLH+AA  G + IVR+L
Sbjct: 75  TGYTPLHHAALNGHRD------VVEVLLRNDALTNVADSKGCYPLHLAAWKGDAQIVRLL 128

Query: 117 VERAKLPQH----ENEELESR----VGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLT 168
           +++   P H    E   LE R     G     I   NN+  TALH A  + + +VV+ L 
Sbjct: 129 IQQG--PSHTRVNEQNALEIRELKKYGPFDPYINAKNNDNETALHCAAQYGHTEVVKALL 186

Query: 169 KE--DPDYQYSANNYGKTPLYMAADY 192
           +E  DP  +   NN  +TPL +AA Y
Sbjct: 187 EELTDPTMR---NNKFETPLDLAALY 209

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 50.8 bits (120), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 58/138 (42%), Gaps = 25/138 (18%)

Query: 53  LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDI 112
           L     +T LHI       E V      E  + C      +  KG TPLHVAAK+G   +
Sbjct: 498 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 551

Query: 113 VRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDP 172
             +L+ER   P            A +  +        T LH AV H N+D+V+LL     
Sbjct: 552 AELLLERDAHPN----------AAGKNGL--------TPLHVAVHHNNLDIVKLLLPRGG 593

Query: 173 DYQYSANNYGKTPLYMAA 190
                A N G TPL++AA
Sbjct: 594 SPHSPAWN-GYTPLHIAA 610

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q9XZC0|LCTA_LATTR Alpha-latrocrustotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=2 SV=2

 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 27/179 (15%)

Query: 32  AAAAGNLEPFKDMAREVIER---LLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS 88
           +A AGN     D+AR ++ +   LL    KN    ++I S+ + N    FV  +LEK   
Sbjct: 502 SATAGN----DDVARLLLAKNNGLLNVPDKNGYTPLHIASERKNN---DFVKFLLEKGAD 554

Query: 89  LLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEE---------LESRVGAARQ 139
           + ++  A   TPLH+AA+   + IV+ L+E+  +  +  E          + S   AAR 
Sbjct: 555 VNVRTFANELTPLHLAARQDFTIIVKTLMEKRGIDVNAKERAGFTPLHLSITSNSRAART 614

Query: 140 MIRMT-------NNEKNTALHEAVCHQNVDVVELLTKEDPDYQYS-ANNYGKTPLYMAA 190
           +I  T       +N   T LH AV   N+   ++L K +   + +  +N G TPL+ A+
Sbjct: 615 LINETPAGINIKSNSGLTPLHLAVLQNNLSAAKVLVKSNKKVKLNEMDNNGMTPLHYAS 673

Crustacean-selective presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q92625|ANS1A_HUMAN Ankyrin repeat and SAM domain-containing protein 1A OS=Homo sapiens GN=ANKS1A PE=1 SV=4

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 20/118 (16%)

Query: 77  KFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA 136
           K V E+L +  +L    ++KG  PLH+AA  G + IVR+L+ +               G 
Sbjct: 93  KDVVEVLLRNDALTNVADSKGCYPLHLAAWKGDAQIVRLLIHQ---------------GP 137

Query: 137 ARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           +   +   NN+  TALH A  + + +VV++L +E  DP  +   NN  +TPL +AA Y
Sbjct: 138 SHTRVNEQNNDNETALHCAAQYGHTEVVKVLLEELTDPTMR---NNKFETPLDLAALY 192

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.

Homo sapiens (taxid: 9606)

>sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 OS=Mus musculus GN=Dapk1 PE=1 SV=3

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 28/181 (15%)

Query: 27  PNLFKAAAAGNLEPFKDMAREVIER--LLTAKTKNTILHINIISQERENVSTKFVAEILE 84
           P L  AA  GN++    M + +I+R   +  + K     I   S+     + KF+ E   
Sbjct: 381 PPLLIAAGCGNIQ----MLQLLIKRGSRIDVQDKGGSNAIYWASRHGHVDTLKFLNE--N 434

Query: 85  KCPSLLLQVNAK-GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQM--- 140
           KCP   L V  K G+T LHVAA++GH+D+V++L      P  +++E E+ +  A      
Sbjct: 435 KCP---LDVKDKSGETALHVAARYGHADVVQLLCSFGSNPDFQDKEEETPLHCAAWHGYY 491

Query: 141 ------------IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYM 188
                       + + N E  T L  A      D+VE L +   D   S  + G   L++
Sbjct: 492 SVAKALCEVGCNVNIKNREGETPLLTASARGYHDIVECLAEHGADLNASDKD-GHIALHL 550

Query: 189 A 189
           A
Sbjct: 551 A 551

Calcium/calmodulin-dependent serine/threonine kinase involved in multiple cellular signaling pathways that trigger cell survival, apoptosis, and autophagy. Regulates both type I apoptotic and type II autophagic cell deaths signal, depending on the cellular setting. The former is caspase-dependent, while the latter is caspase-independent and is characterized by the accumulation of autophagic vesicles. Phosphorylates PIN1 resulting in inhibition of its catalytic activity, nuclear localization, and cellular function. Phosphorylates TPM1, enhancing stress fiber formation in endothelial cells. Phosphorylates STX1A and significantly decreases its binding to STXBP1. Phosphorylates PRKD1 and regulates JNK signaling by binding and activating PRKD1 under oxidative stress. Phosphorylates BECN1, reducing its interaction with BCL2 and BCL2L1 and promoting the induction of autophagy. Phosphorylates TSC2, disrupting the TSC1-TSC2 complex and stimulating mTORC1 activity in a growth factor-dependent pathway. Phosphorylates RPS6, MYL9 and DAPK3 (By similarity). Acts as a signaling amplifier of NMDA receptors at extrasynaptic sites for mediating brain damage in stroke. Cerebral ischemia recruits DAPK1 into the NMDA receptor complex and it phosphorylates GRINB at Ser-1303 inducing injurious Ca(2+) influx through NMDA receptor channels, resulting in an irreversible neuronal death.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 20/101 (19%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
           ++KG  PLH+AA  G  DIV++L+     P H      SRV          N EK TALH
Sbjct: 88  DSKGCFPLHLAAWRGDVDIVQILIHHG--PSH------SRVNE-------QNLEKETALH 132

Query: 154 EAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
            A  + + +VV +L +E  DP  +   N+ G+TPL +AA Y
Sbjct: 133 CAAQYGHSEVVRVLLQELTDPSMR---NSRGETPLDLAALY 170

Danio rerio (taxid: 7955)

>sp|Q02989|LITA_LATTR Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 96/200 (48%), Gaps = 38/200 (19%)

Query: 6   NEIEEASLLDNNGEI---SQSQIDPNLFKAAAAGNLEPFKDMAREVIER-----LLTAKT 57
           N++ E  L D N  I   +   I+P L  A+A GN    K +  E++ +      LT+K 
Sbjct: 716 NDVAERLLSDENLNIRLETNGGINP-LHLASATGN----KQLVIELLAKNADVTRLTSKG 770

Query: 58  KNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLV 117
            +  LH+ II +  E     F   ++EK  ++  + N+ G TPLH AA  G ++I R+L+
Sbjct: 771 FSA-LHLGIIGKNEE---IPFF--LVEKGANVNDKTNS-GVTPLHFAAGLGKANIFRLLL 823

Query: 118 ERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYS 177
            R      + E++ S++                 +HEAV + ++++V +L ++DP     
Sbjct: 824 SRG--ADIKAEDINSQM----------------PIHEAVSNGHLEIVRILIEKDPSLMNV 865

Query: 178 ANNYGKTPLYMAADYRSSNM 197
            N   + P Y+A + R  ++
Sbjct: 866 KNIRNEYPFYLAVEKRYKDI 885

Insecticidal presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). The toxin forms channels with 0.55-0.58 nm entrance diameter and a relatively small conductance in planar phospholipid membranes.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLV----ERAKLPQHEN-----EELESRVGAARQM--- 140
           V+  G+TPLHVAA++GH  ++  L+    + AK   H         L +     R++   
Sbjct: 335 VDKDGNTPLHVAARYGHELLINTLITSGADTAKCGIHSMFPLHLAALNAHSDCCRKLLSS 394

Query: 141 ---IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
              I   +    T LH A    NV+ ++LL     D+ +  +  G+TPL+ AA
Sbjct: 395 GFEIDTPDKFGRTCLHAAAAGGNVECIKLLQSSGADF-HKKDKCGRTPLHYAA 446

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 47.4 bits (111), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 19/105 (18%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTAL 152
           V  +G TPLH+A++ GH+D+V +L+++               GA    I M+     T+L
Sbjct: 658 VTKQGVTPLHLASQEGHTDMVTLLLDK---------------GAN---IHMSTKSGLTSL 699

Query: 153 HEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
           H A     V+V ++LTK   D Q +    G TPL +A  Y +  M
Sbjct: 700 HLAAQEDKVNVADILTKHGAD-QDAHTKLGYTPLIVACHYGNVKM 743

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
224145572	395	predicted protein [Populus trichocarpa]	0.837	0.417	0.520	2e-41
224127098	399	predicted protein [Populus trichocarpa]	0.822	0.406	0.532	1e-40
224127104	405	predicted protein [Populus trichocarpa]	0.822	0.4	0.532	1e-40
224127081	227	predicted protein [Populus trichocarpa]	0.822	0.713	0.532	1e-40
224127093	281	predicted protein [Populus trichocarpa]	0.822	0.576	0.520	6e-40
224127079	394	predicted protein [Populus trichocarpa]	0.812	0.406	0.526	3e-39
224157601	254	predicted protein [Populus trichocarpa]	0.812	0.629	0.514	4e-39
224127106	575	predicted protein [Populus trichocarpa]	0.812	0.278	0.512	4e-39
224127089	217	predicted protein [Populus trichocarpa]	0.822	0.746	0.514	5e-38
224127096	219	predicted protein [Populus trichocarpa]	0.827	0.744	0.511	1e-37

>gi|224145572|ref|XP_002325691.1| predicted protein [Populus trichocarpa] gi|222862566|gb|EEF00073.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 121/169 (71%), Gaps = 4/169 (2%)

Query: 25  IDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILE 84
           ++P L+KAA AGN+ PFKD     +  LLT K KNTILH+ + +Q + + ST FV +I++
Sbjct: 1   MEPKLYKAAEAGNINPFKDRLPTSLNELLTPK-KNTILHVYLENQRKGSKSTDFVGQIID 59

Query: 85  KCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMT 144
            CP LLLQ N KG+ PLH AA++G S++VRVL++RAK       +LES V  A++M+RMT
Sbjct: 60  MCPPLLLQANKKGEIPLHFAARYGRSNVVRVLIDRAKA---RPTDLESGVTEAKKMLRMT 116

Query: 145 NNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYR 193
           N EK+TALH A  +    VVE+LTKEDP++ YS N +G+TPLY+AA+ R
Sbjct: 117 NEEKDTALHVAARNIQAQVVEILTKEDPEFSYSTNVHGETPLYIAANLR 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 124/169 (73%), Gaps = 7/169 (4%)

Query: 23  SQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI 82
           S +DP LFKAAA G+++PF+   +  +++LLT   +NTILH+ + +Q RE   T FV  I
Sbjct: 5   SYMDPVLFKAAAEGDIDPFEKY-QTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVII 62

Query: 83  LEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAK-LPQHENEELESRVGAARQMI 141
           LE CP LL Q N KG+ PLH+AA +GHS++V+VL++RAK LP     + ES V  A++M+
Sbjct: 63  LEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPT----DSESGVTEAKKML 118

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
           RMTN E++TALHEA  H+   VVE+LTKEDP++ YSAN +G+TPLY+AA
Sbjct: 119 RMTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAA 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 124/169 (73%), Gaps = 7/169 (4%)

Query: 23  SQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI 82
           S +DP LFKAAA G+++PF+   +  +++LLT   +NTILH+ + +Q RE   T FV  I
Sbjct: 11  SYMDPVLFKAAAEGDIDPFEKY-QTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVII 68

Query: 83  LEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAK-LPQHENEELESRVGAARQMI 141
           LE CP LL Q N KG+ PLH+AA +GHS++V+VL++RAK LP     + ES V  A++M+
Sbjct: 69  LEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPT----DSESGVTEAKKML 124

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
           RMTN E++TALHEA  H+   VVE+LTKEDP++ YSAN +G+TPLY+AA
Sbjct: 125 RMTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAA 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127081|ref|XP_002329387.1| predicted protein [Populus trichocarpa] gi|222870437|gb|EEF07568.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 124/169 (73%), Gaps = 7/169 (4%)

Query: 23  SQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI 82
           S +DP LFKAAA G+++PF+   +  +++LLT   +NTILH+ + +Q RE   T FV  I
Sbjct: 11  SYMDPVLFKAAAEGDIDPFEKY-QTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVII 68

Query: 83  LEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAK-LPQHENEELESRVGAARQMI 141
           LE CP LL Q N KG+ PLH+AA +GHS++V+VL++RAK LP     + ES V  A++M+
Sbjct: 69  LEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPT----DSESGVTEAKKML 124

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
           RMTN E++TALHEA  H+   VVE+LTKEDP++ YSAN +G+TPLY+AA
Sbjct: 125 RMTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAA 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127093|ref|XP_002329392.1| predicted protein [Populus trichocarpa] gi|222870442|gb|EEF07573.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (427), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 126/169 (74%), Gaps = 7/169 (4%)

Query: 23  SQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI 82
           + +DP LFKAA AG++ PF++  +  +++LLT   +NTILH+ + +Q RE   T FV +I
Sbjct: 3   TYMDPVLFKAAEAGDIGPFENY-QTCLDQLLTPD-ENTILHVYLGNQSREPEFTDFVDKI 60

Query: 83  LEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAK-LPQHENEELESRVGAARQMI 141
           LE CP LLLQ N KG+ PLH+AA++GHS++V VL+ERA+ LP     + ES V  A++M+
Sbjct: 61  LEMCPPLLLQANKKGEIPLHLAARYGHSNVVGVLIERAEALPT----DPESGVSEAKKML 116

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
           RMTN+E++TALHEA  +    VVE+LT+EDP++ YSAN +G+TPLY+AA
Sbjct: 117 RMTNDEQDTALHEAARNMRSHVVEILTEEDPEFSYSANVHGETPLYIAA 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 123/167 (73%), Gaps = 7/167 (4%)

Query: 25  IDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILE 84
           +DP LFKAA AGN+ PF++  +  + +LLTA  +NTILH+ + +Q  E  ST FV + LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENY-QTSLNQLLTAD-ENTILHVYLKNQSSEPESTDFVDKFLE 58

Query: 85  KCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAK-LPQHENEELESRVGAARQMIRM 143
           +CP LL Q N +G+TPLH+AA+ GHS++V+VL++RAK LP     + ES V  A+ M+RM
Sbjct: 59  RCPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAKALPA----DPESGVTKAKMMLRM 114

Query: 144 TNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
           TN E++TALHEA  ++   VVE+LTKEDP++ Y AN +G+TPLY+AA
Sbjct: 115 TNEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAA 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224157601|ref|XP_002337868.1| predicted protein [Populus trichocarpa] gi|222869936|gb|EEF07067.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/167 (51%), Positives = 124/167 (74%), Gaps = 7/167 (4%)

Query: 25  IDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILE 84
           +DP L+KAA  GN++PF++  +  +++LLT   +NTIL + + +Q  E  ST FV +ILE
Sbjct: 13  MDPVLYKAAEEGNIDPFEN-CQTCLDQLLTPD-ENTILLVYLRNQTTEPKSTDFVYKILE 70

Query: 85  KCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAK-LPQHENEELESRVGAARQMIRM 143
           +CP LL Q N KG+TPLH+AA++GH+++V++L+ERA+ LP     + ESRV  A+ M+RM
Sbjct: 71  RCPPLLFQANKKGETPLHLAARYGHANVVKLLIERAEALPS----DPESRVTKAKMMLRM 126

Query: 144 TNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
           TN E++TALHEA  +    VVE+LTKEDP++ YSAN  G+TPLY+AA
Sbjct: 127 TNGERDTALHEAARNNQSHVVEILTKEDPEFPYSANVDGETPLYIAA 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 120/166 (72%), Gaps = 6/166 (3%)

Query: 25  IDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILE 84
           +DP LFKAA AGN+ PF++     + +LLT   +NTILH+ + +Q  E  ST FV + LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTCSLNQLLTPD-ENTILHVYLKNQSSEPESTDFVDKFLE 59

Query: 85  KCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAK-LPQHENEELESRVGAARQMIRM 143
           +CP LL Q N +G+TPLH+ A++GHS++V+VL++RAK LP     + ES V  A+ M+RM
Sbjct: 60  RCPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAKALPA----DPESGVTKAKMMLRM 115

Query: 144 TNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA 189
           TN E++TALHEA  ++   VVE+LTKEDP++ Y AN +G+TPLY+A
Sbjct: 116 TNEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIA 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127089|ref|XP_002329390.1| predicted protein [Populus trichocarpa] gi|222870440|gb|EEF07571.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 123/169 (72%), Gaps = 7/169 (4%)

Query: 23  SQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI 82
           + +DP LFKAA AGN+ PF++     + +LLT   +NTILH+ + +Q RE  ST FV  I
Sbjct: 3   TYMDPLLFKAAEAGNIGPFENYQTR-LNQLLTPD-ENTILHVYLGNQSREPESTDFVDII 60

Query: 83  LEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAK-LPQHENEELESRVGAARQMI 141
           LE CP LLLQ N KG+ PLH+AA++GHS++V+VL++ AK LP     + ES +  A++M+
Sbjct: 61  LEMCPPLLLQANEKGEIPLHLAARYGHSNVVKVLIDCAKALPT----DPESGLTKAQKML 116

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
           RM N E++TALHEA  ++   +VE+LTKEDP++ YSAN +G+TPLY+AA
Sbjct: 117 RMANEEQDTALHEAARNRRSHLVEILTKEDPEFSYSANVHGETPLYIAA 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127096|ref|XP_002329393.1| predicted protein [Populus trichocarpa] gi|222870443|gb|EEF07574.1| predicted protein [Populus trichocarpa]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 121/168 (72%), Gaps = 5/168 (2%)

Query: 23  SQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI 82
           + +DP LFKAA AGN+ PF++  +  + +L T   +NTILH+ + +Q  E  ST FV +I
Sbjct: 3   TYMDPVLFKAAEAGNIGPFEN-DQTCLNQLFTPD-ENTILHVCLGNQSSEPESTYFVDKI 60

Query: 83  LEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIR 142
           LE CP LLLQ N KG+ PLH+AA++GHS++VRVL++RA+       + ES V  A++M+R
Sbjct: 61  LEMCPPLLLQANKKGEIPLHLAARYGHSNVVRVLIDRARA---RPTDPESGVTEAKKMLR 117

Query: 143 MTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
           MTN E++TALHEA  ++   VVE+LTKEDP + YSAN + +TPLY+AA
Sbjct: 118 MTNVEQDTALHEAARNRRGHVVEILTKEDPYFSYSANVHEETPLYIAA 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.761	0.216	0.295	2.1e-11
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.883	0.257	0.260	2.9e-11
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.842	0.258	0.302	2.2e-10
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.796	0.234	0.296	4.9e-10
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.888	0.305	0.287	6.3e-10
ZFIN|ZDB-GENE-050628-1	999	mib2 "mind bomb 2" [Danio reri	0.832	0.164	0.292	3.8e-07
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.771	0.246	0.314	4.4e-07
UNIPROTKB|E1C898	1155	ANKS1A "Uncharacterized protei	0.563	0.096	0.365	4.6e-07
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.578	0.213	0.296	5.4e-07
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.923	0.304	0.236	1.7e-06

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 50/169 (29%), Positives = 83/169 (49%)

Query:    27 PNLFKAAAAGNLEPFKDM-AREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEK 85
             P +F   + GN E  + + +R +    + + T ++ILH+ +     E      V EI+ +
Sbjct:   100 PEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLE-----LVKEIVCE 154

Query:    86 CPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLV-----ERAKLPQHENEELESRVGAARQM 140
             CP LLL+ N+ G TPLHVAA  GH+ IV   V       A+L   E+E +   V      
Sbjct:   155 CPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYV------ 208

Query:   141 IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA 189
               + + + NTAL+ A+  +  ++   L   + D  +  N YG + L++A
Sbjct:   209 --LKDKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVA 255

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 49/188 (26%), Positives = 89/188 (47%)

Query:     5 SNEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTK-NTILH 63
             ++ ++ ++L ++  E     + P    A  AG+    +DM  +V   L +     NT+LH
Sbjct:    79 THSLDLSTLFNDTSETVP--MGPKTIAAVRAGDETYLRDMKFDVNIALSSVNDHGNTMLH 136

Query:    64 INIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLP 123
             +   +       T  V  IL   P LL++ N+ G+  LHVAA  GH  +V  LV   K  
Sbjct:   137 LAAAAGH-----TDLVCYILNAYPGLLMKSNSMGEVALHVAAGAGHLAVVEALVSFIK-- 189

Query:   124 QHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGK 183
                 +   ++ G A+++    +  ++ ALH ++  +++ V   L   +    + ANN G 
Sbjct:   190 ----DISCNKPGVAKKIYFAKDRHQDNALHVSLKRKHLKVASCLVCAEQSLSFVANNDGV 245

Query:   184 TPLYMAAD 191
             +PLY+A +
Sbjct:   246 SPLYLAVE 253

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 55/182 (30%), Positives = 84/182 (46%)

Query:    12 SLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTA---KTKNTILHINIIS 68
             +L D  GE     ++P +F A  AGN++ F D  +      L     +T +  LH+    
Sbjct:    25 NLYDLPGEYVS--MNPEIFSAMRAGNVK-FLDKMKTNNNTPLACFRNETGDFTLHLAAAW 81

Query:    69 QERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERA-KLPQHEN 127
                E      V  I+ +CP LLL+ N+K   PLH AA  G   +V   V R  ++    +
Sbjct:    82 GRLE-----LVKRIVSECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVNEISDGLS 136

Query:   128 EELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLY 187
             EE   RV     +  M + + NTALH A+   ++     L K +    + ANN+G +PL+
Sbjct:   137 EEERERVN----LYAMKDIDGNTALHLALKGGHLKTAACLVKANHLASFLANNHGVSPLF 192

Query:   188 MA 189
              A
Sbjct:   193 TA 194

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 4.9e-10, P = 4.9e-10
 Identities = 51/172 (29%), Positives = 82/172 (47%)

Query:    24 QIDPNLFKAAAAGNLEPFKDMARE--VIERLLTAKTKNTILHINIISQERENVSTKFVAE 81
             ++ P +F   + G  E  + +      +ER+  + T ++ILHI       E      V E
Sbjct:    66 EMTPEIFGGMSNGEKECLEKLRSNGTPMERV-KSNTGDSILHIAAKWGHLE-----LVKE 119

Query:    82 ILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVER--AKLPQHENEELESRVGAARQ 139
             I+ +CP LL + N+   TPLHVA   GH+ +V  LV    + L     EE E   G    
Sbjct:   120 IIFECPCLLFEQNSSRQTPLHVATHGGHTKVVEALVASVTSALASLSTEESE---GLNPH 176

Query:   140 MIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
             +++  + + NTAL+ A+  + +++   L   D D  +  NN G + LY A D
Sbjct:   177 VLK--DEDGNTALYYAIEGRYLEMATCLVNADKDAPFLGNNKGISSLYEAVD 226

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 6.3e-10, P = 6.3e-10
 Identities = 54/188 (28%), Positives = 88/188 (46%)

Query:     6 NEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTK--NTILH 63
             N ++ + L    GE    Q++  +F   + G+ E   +M + V   +   K+   +++LH
Sbjct:    64 NNLKLSDLFHLPGE--NVQMNTEVFSGLSDGDKECL-EMLKGVGTPMACLKSDRGDSVLH 120

Query:    64 INIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLP 123
             +       E      V  I+ +CP L+L++N K   PLHVAA  GHS IV  LV      
Sbjct:   121 LAARWGHLE-----LVKNIISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFF 175

Query:   124 QHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGK 183
                  E E R      ++R  +   NTALH A+  + +++   L  E+ +  +  NN G 
Sbjct:   176 SDRLAE-EDRERLNPYVLR--DKYGNTALHLAIEGRYMEMAASLVNENQNASFLENNEGI 232

Query:   184 TPLYMAAD 191
             + LYMA +
Sbjct:   233 SSLYMAVE 240

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050628-1 mib2 "mind bomb 2" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 55/188 (29%), Positives = 90/188 (47%)

Query:    24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEIL 83
             ++D NL       N          V+E+LL+  T+       +I  E  + S   V E+L
Sbjct:   443 EVDANLMTVE---NASESSSTVISVLEKLLSQSTEQDNPGRLVI--EAAHGSAAKVRELL 497

Query:    84 EKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRV-----G--- 135
             +K P  +  +  +G T L VAA  GH ++V+VL++     + ++E+ ++ +     G   
Sbjct:   498 QKHPDKV-DIKNQGKTALQVAAHQGHVEVVKVLLQANSSIEAKDEDGDAALHYTAFGNQA 556

Query:   136 -AARQM------IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLY- 187
               AR +      + + NN   TALH AV     DVV +LT+   D     ++YG TPL+ 
Sbjct:   557 EIARLLLSKGASVNLLNNSMCTALHIAVNKGFTDVVRVLTEHSADVNLQ-DSYGDTPLHD 615

Query:   188 -MAADYRS 194
              +A D+RS
Sbjct:   616 AIAKDFRS 623

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IC

GO:0048471 "perinuclear region of cytoplasm" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0002090 "regulation of receptor internalization" evidence=IDA

GO:0030318 "melanocyte differentiation" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 55/175 (31%), Positives = 87/175 (49%)

Query:    22 QSQI-DPNLFKAAAAGN----LEPFKDMAREVIERLLTAKTKNTILHINIISQERENVST 76
             +S+I +P +  A  AG+    L+   D  + V +RL+  +  N+ILHI   +    +V  
Sbjct:    33 ESEIMNPAILCAVRAGDKVSLLKRINDDVK-VTQRLVDNQG-NSILHI---AAALGHVH- 86

Query:    77 KFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA 136
               V  I+   P+LL  VN  G+T LHVAA+ G  +IV +LV        E+   ++ + A
Sbjct:    87 -IVEFIISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRFIT----ESSSYDAFIAA 141

Query:   137 ARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
                  +  N +  TALH A+  ++V+V   L     D  +  NN   +PLYMA +
Sbjct:   142 -----KSKNGD--TALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVE 189

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C898 ANKS1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 138 (53.6 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 46/126 (36%), Positives = 68/126 (53%)

Query:    77 KFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHE--NEE--LE- 131
             K V E+L +  +L    + KG  PLH+AA  G +DIV++L+ +   P H   NE+  LE 
Sbjct:   100 KDVVEVLLRNDALTNVADCKGCYPLHLAAWKGDADIVKLLIHQG--PSHTKVNEQNALEI 157

Query:   132 ---SRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPL 186
                 + G     I   NN+  TALH A  + + +VV++L +E  DP  +   NN  +TPL
Sbjct:   158 KELKKYGPFDPYINAKNNDNETALHCAAQYGHTEVVKVLLEELTDPTMR---NNKFETPL 214

Query:   187 YMAADY 192
              +AA Y
Sbjct:   215 DLAALY 220

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006929 "substrate-dependent cell migration" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 35/118 (29%), Positives = 60/118 (50%)

Query:    77 KFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA 136
             + V +I+E  PSL+   N K DTPLH+AA+ GH+ I+ +++E         E LE  V  
Sbjct:    41 ELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLESTA---ESIESLEETVPN 97

Query:   137 ARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDP-DYQYSANNYGKTPLYMAADYR 193
               ++  M N +  T LH AV + +V+ +     + P  +        +T  ++AA ++
Sbjct:    98 DLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINKAPLSFDSVTLQTSETVFHLAARHK 155

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 49/207 (23%), Positives = 102/207 (49%)

Query:     4 VSNEIEEA-SLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLL--TAKTKNT 60
             ++N ++ A +L++N   ++  ++D     AA  G      D   E    L+    + ++T
Sbjct:    16 LNNHLDAALTLVENMRSMTMVELD-----AAFTGQQPVIIDKMLEKFPSLVLDVDEEQST 70

Query:    61 ILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERA 120
             +LH   ++Q  E  +TK    +++ CPSL+   N  G+TPLH+AA+ G+ +I+  ++E  
Sbjct:    71 LLH-KAVTQRNEEYATK----VIDLCPSLVSVTNVDGNTPLHLAAEIGNINILWKMLETG 125

Query:   121 KLPQHE-NEE---------LESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE 170
             +    + N++         L + V +AR ++  T++     L+ A   Q   +++ + ++
Sbjct:   126 EAECMKINKQGQTAFILACLNNNVNSARILVEGTSSMTMVELNAAFSEQQQVIIDSILEK 185

Query:   171 DPDYQYSANNYGKTPLYMAADYRSSNM 197
              P+    A+    T L+ A   +S N+
Sbjct:   186 FPNLILDADEEQSTLLHKAC--KSGNL 210

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 73.2 bits (180), Expect = 5e-17
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 25/142 (17%)

Query: 56  KTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRV 115
           +   T LH+   +   E      V ++L +  + +   +  G TPLH+AAK GH +IV++
Sbjct: 5   EDGRTPLHLAASNGHLE------VVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKL 58

Query: 116 LVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQ 175
           L+E+               GA    +   + + NT LH A  + N+DVV+LL K   D  
Sbjct: 59  LLEK---------------GAD---VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV- 99

Query: 176 YSANNYGKTPLYMAADYRSSNM 197
            + +  G+TPL++AA      +
Sbjct: 100 NARDKDGRTPLHLAAKNGHLEV 121

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 19/106 (17%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTA 151
             +  G TPLH+AA  GH ++V++L+E                GA    +   +N+  T 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLEN---------------GA---DVNAKDNDGRTP 43

Query: 152 LHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
           LH A  + ++++V+LL ++  D   + +  G TPL++AA   + ++
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAARNGNLDV 88

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 60.5 bits (147), Expect = 4e-12
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 24/139 (17%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS 88
           L  AA+ G+LE  K +     +         T LH+   +        + V  +LEK   
Sbjct: 11  LHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNG-----HLEIVKLLLEKGAD 65

Query: 89  LLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
           +  + +  G+TPLH+AA+ G+ D+V++L++                      +   + + 
Sbjct: 66  VNAR-DKDGNTPLHLAARNGNLDVVKLLLKH------------------GADVNARDKDG 106

Query: 149 NTALHEAVCHQNVDVVELL 167
            T LH A  + +++VV+LL
Sbjct: 107 RTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 21/99 (21%)

Query: 75  STKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRV 134
           + + V  +LEK   + L      DT LH+AA+ G+ +IV++L+E                
Sbjct: 9   NLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEH--------------- 50

Query: 135 GAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPD 173
           GA    +   + + NTALH A  + N+++V+LL +   D
Sbjct: 51  GAD---VNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 50.7 bits (122), Expect = 6e-09
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 21/97 (21%)

Query: 101 LHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQN 160
           LH+AAK G+ ++V++L+E+               GA      +   + +TALH A  + N
Sbjct: 1   LHLAAKNGNLELVKLLLEK---------------GA-----DVNLGDTDTALHLAARNGN 40

Query: 161 VDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
           +++V+LL +   D   + +  G T L++AA   +  +
Sbjct: 41  LEIVKLLLEHGADVN-AKDKDGNTALHLAARNGNLEI 76

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.9 bits (107), Expect = 9e-07
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 12/93 (12%)

Query: 29  LFKAAAAGNLEPFKDMAREVIER--LLTAKTKNTILHINIISQERENVSTKFVAEILEKC 86
           L  AA  GNLE    + + ++E+   +     +T LH+   +      + + V  +LE  
Sbjct: 1   LHLAAKNGNLE----LVKLLLEKGADVNLGDTDTALHLAARNG-----NLEIVKLLLEHG 51

Query: 87  PSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVER 119
             +  + +  G+T LH+AA+ G+ +IV++L+E 
Sbjct: 52  ADVNAK-DKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS 88
           L  AA  G+LE  K +  +  +     K  NT LH+   +   +      V ++L K  +
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLD------VVKLLLKHGA 97

Query: 89  LLLQVNAKGDTPLHVAAKFGHSDIVRVLV 117
            +   +  G TPLH+AAK GH ++V++L+
Sbjct: 98  DVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 18/71 (25%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           G T LH AA  G  ++V+ L+E+                     I  T+ + NTALH A 
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD------------------INRTDEDGNTALHIAA 42

Query: 157 CHQNVDVVELL 167
            + N++V++LL
Sbjct: 43  ENGNLEVLKLL 53

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 5e-05
 Identities = 12/24 (50%), Positives = 20/24 (83%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLVER 119
            G+TPLH+AA+ GH ++V++L+E 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 18/74 (24%)

Query: 82  ILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
           +LE  P  L   +  G+TPLH+AAK+G  ++V+ L++                      +
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP------------------GVDL 42

Query: 142 RMTNNEKNTALHEA 155
            + +++  TAL  A
Sbjct: 43  NLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 24/178 (13%)

Query: 1   MNSVSNEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKN- 59
           +  +        LL    +   +  D +      +   +    + + ++        K+ 
Sbjct: 45  LALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA 104

Query: 60  ---TILHINIISQERENVSTKFVAEILEK--CPSLLLQVNAKGDTPLHVAAKFGHSDIVR 114
              T LH+  ++      + +    +LE      +    +  G+TPLH AA  G +DIV 
Sbjct: 105 DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVE 164

Query: 115 VLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDP 172
           +L     L    +                 N+   TAL  A  +  +++V+LL  +  
Sbjct: 165 LL-----LEAGADPNSR-------------NSYGVTALDPAAKNGRIELVKLLLDKGL 204

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.0 bits (90), Expect = 6e-04
 Identities = 44/202 (21%), Positives = 69/202 (34%), Gaps = 25/202 (12%)

Query: 4   VSNEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILH 63
           +        LL     +  S    N         LE     A  + E LL       +  
Sbjct: 9   LLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAA 68

Query: 64  INIIS----QERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHS-----DIVR 114
            ++          +     + ++L    + +   +A GDTPLH+AA  G+      ++ +
Sbjct: 69  RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAK 128

Query: 115 VLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDY 174
           +L+E        N   E                 NT LH A  + + D+VELL +   D 
Sbjct: 129 LLLEAGADLDVNNLRDEDG---------------NTPLHWAALNGDADIVELLLEAGADP 173

Query: 175 QYSANNYGKTPLYMAADYRSSN 196
             S N+YG T L  AA      
Sbjct: 174 -NSRNSYGVTALDPAAKNGRIE 194

Length = 235

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 39/108 (36%)

Query: 13  LLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERE 72
           L DN GE     +  NL   A+ GN          ++E LL AK    I           
Sbjct: 513 LGDNGGEHDDPNMASNLLTVASTGN--------AALLEELLKAKLDPDI----------- 553

Query: 73  NVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERA 120
                                ++KG TPLH+AA  G+ D V VL++ A
Sbjct: 554 --------------------GDSKGRTPLHIAASKGYEDCVLVLLKHA 581

Length = 823

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.1 bits (79), Expect = 0.002
 Identities = 10/24 (41%), Positives = 20/24 (83%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLVER 119
            G TPLH+AA+ G+ ++V++L+++
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDK 24

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 19/98 (19%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEA 155
            G TPLH+A      DI+++L+ R   P                   + N +K + LH A
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIARGADPD------------------IPNTDKFSPLHLA 142

Query: 156 VCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYR 193
           V   ++  +ELL           +  G TPL +A    
Sbjct: 143 VMMGDIKGIELLIDHKACLDIE-DCCGCTPLIIAMAKG 179

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.98
PHA02791	284	ankyrin-like protein; Provisional	99.96
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
PHA02874	434	ankyrin repeat protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.94
PHA02878	477	ankyrin repeat protein; Provisional	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.94
PHA02946	446	ankyin-like protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02798	489	ankyrin-like protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA03100	480	ankyrin repeat protein; Provisional	99.93
KOG0508	615	consensus Ankyrin repeat protein [General function	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.92
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.92
PHA02876	682	ankyrin repeat protein; Provisional	99.92
PHA02946	446	ankyin-like protein; Provisional	99.91
KOG0510	929	consensus Ankyrin repeat protein [General function	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.9
PHA02798	489	ankyrin-like protein; Provisional	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
KOG0508	615	consensus Ankyrin repeat protein [General function	99.9
PHA03095	471	ankyrin-like protein; Provisional	99.9
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.89
PHA02989	494	ankyrin repeat protein; Provisional	99.89
PHA02741	169	hypothetical protein; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.87
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.85
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
PHA02795	437	ankyrin-like protein; Provisional	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.83
PHA02730	672	ankyrin-like protein; Provisional	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.83
PHA02917	661	ankyrin-like protein; Provisional	99.83
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.82
PHA02730	672	ankyrin-like protein; Provisional	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.79
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.77
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.77
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.75
KOG0514	452	consensus Ankyrin repeat protein [General function	99.74
PHA02792	631	ankyrin-like protein; Provisional	99.73
PHA02792	631	ankyrin-like protein; Provisional	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.7
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.64
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.64
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.63
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.6
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.56
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.54
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.53
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.52
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.51
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.48
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.44
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.39
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.0
PF13606	30	Ank_3: Ankyrin repeat	98.99
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.9
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.9
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.83
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.83
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.82
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.82
PF13606	30	Ank_3: Ankyrin repeat	98.82
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.81
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.79
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.79
KOG0522	560	consensus Ankyrin repeat protein [General function	98.65
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.62
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.61
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.54
KOG0522	560	consensus Ankyrin repeat protein [General function	98.48
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.4
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.2
KOG0511	516	consensus Ankyrin repeat protein [General function	98.16
KOG0511	516	consensus Ankyrin repeat protein [General function	98.14
KOG2384	223	consensus Major histocompatibility complex protein	98.1
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.02
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.91
KOG2384	223	consensus Major histocompatibility complex protein	97.89
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.8
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.37
KOG2505	591	consensus Ankyrin repeat protein [General function	97.31
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.04
KOG2505	591	consensus Ankyrin repeat protein [General function	96.75
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.5
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.43
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.03
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	91.04
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.83
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	86.49

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3.6e-33  Score=184.15  Aligned_cols=153  Identities=22%  Similarity=0.235  Sum_probs=137.3

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHH-HHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAR-EVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ..+-++.+|||+||..|+.+++.+|++ .+..++.+|..|+||||+||  ..|+.++++.|+.   ..++++|..+..|.
T Consensus        33 r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~--s~g~~evVk~Ll~---r~~advna~tn~G~  107 (226)
T KOG4412|consen   33 RDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA--SNGNDEVVKELLN---RSGADVNATTNGGQ  107 (226)
T ss_pred             cccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhh--hcCcHHHHHHHhc---CCCCCcceecCCCc
Confidence            444588999999999999999999996 46666778889999999999  8999999888866   34889999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccc
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSA  178 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  178 (197)
                      |+||||+..++.+++++|++.|+.+..                  .|..|.||||-|+..|..+++++|+..|+..+ ..
T Consensus       108 T~LHyAagK~r~eIaqlLle~ga~i~~------------------kD~~~qtplHRAAavGklkvie~Li~~~a~~n-~q  168 (226)
T KOG4412|consen  108 TCLHYAAGKGRLEIAQLLLEKGALIRI------------------KDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN-TQ  168 (226)
T ss_pred             ceehhhhcCChhhHHHHHHhcCCCCcc------------------cccccCchhHHHHhccchhhHHHHHhcCCCCC-cc
Confidence            999999999999999999999998776                  99999999999999999999999999999988 99


Q ss_pred             ccCCCcHHHHHHhcccCC
Q 043188          179 NNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       179 ~~~g~tpl~~A~~~~~~~  196 (197)
                      |..|+||||.|.-.|+.+
T Consensus       169 Dk~G~TpL~~al~e~~~d  186 (226)
T KOG4412|consen  169 DKYGFTPLHHALAEGHPD  186 (226)
T ss_pred             cccCccHHHHHHhccCch
Confidence            999999999996555543

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.4e-29  Score=184.52  Aligned_cols=169  Identities=16%  Similarity=0.096  Sum_probs=140.7

Q ss_pred             ccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           19 EISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        19 ~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ...+..|.||||+|+..|+.++++.|++.|.+++..  .|.||||+|+  ..|+.+++++|+..    +++++.++..|.
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d~~TpLh~Aa--~~g~~eiV~lLL~~----Gadvn~~d~~G~   95 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAA--TLEDTKIVKILLFS----GMDDSQFDDKGN   95 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--CCCCHHHHHH--HCCCHHHHHHHHHC----CCCCCCCCCCCC
Confidence            356778999999999999999999999999877654  4789999999  99999999999885    888999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhH-HhhHHHH---------HHHhh----ccC-CCCchHHHHHHhcCCHHH
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEEL-ESRVGAA---------RQMIR----MTN-NEKNTALHEAVCHQNVDV  163 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~~---------~~~~~----~~~-~~g~t~l~~a~~~~~~~~  163 (197)
                      ||||+|+..++.+++++|++.+++++.....+ ..++..+         ..++.    ..+ ..|.||||+|+..|+.++
T Consensus        96 TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~ei  175 (284)
T PHA02791         96 TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDM  175 (284)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHH
Confidence            99999999999999999999999886655443 2333321         12222    123 248999999999999999


Q ss_pred             HHHHhhcCCCcccccccCCCcH-HHHHHhcccCC
Q 043188          164 VELLTKEDPDYQYSANNYGKTP-LYMAADYRSSN  196 (197)
Q Consensus       164 ~~~Ll~~g~~~~~~~~~~g~tp-l~~A~~~~~~~  196 (197)
                      +++|++.|++++ .++..|.|| ||+|+..|+.+
T Consensus       176 v~lLL~~gAd~n-~~d~~g~t~~L~~Aa~~~~~e  208 (284)
T PHA02791        176 MILLLDYMTSTN-TNNSLLFIPDIKLAIDNKDLE  208 (284)
T ss_pred             HHHHHHCCCCCC-cccCCCCChHHHHHHHcCCHH
Confidence            999999999988 888999987 99999998754

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.8e-29  Score=166.74  Aligned_cols=146  Identities=24%  Similarity=0.269  Sum_probs=136.8

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHH-HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMARE-VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ..+..|-+|||.||..|+.++|+.|+.+ |++++.....|.||||||+  ..|+.++.++|++.    ++.++.+|..|.
T Consensus        67 dkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAa--gK~r~eIaqlLle~----ga~i~~kD~~~q  140 (226)
T KOG4412|consen   67 DKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAA--GKGRLEIAQLLLEK----GALIRIKDKQGQ  140 (226)
T ss_pred             CccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhh--cCChhhHHHHHHhc----CCCCcccccccC
Confidence            4577889999999999999999999998 9999988889999999999  99999999999996    899999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccc
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSA  178 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  178 (197)
                      ||||-|+.-|..+++++|+..++.++.                  .|..|+||||.|...++.+...+|++.|++.. ..
T Consensus       141 tplHRAAavGklkvie~Li~~~a~~n~------------------qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~-~e  201 (226)
T KOG4412|consen  141 TPLHRAAAVGKLKVIEYLISQGAPLNT------------------QDKYGFTPLHHALAEGHPDVAVLLVRAGADTD-RE  201 (226)
T ss_pred             chhHHHHhccchhhHHHHHhcCCCCCc------------------ccccCccHHHHHHhccCchHHHHHHHhcccee-ec
Confidence            999999999999999999999988765                  99999999999988899999999999999988 88


Q ss_pred             ccCCCcHHHHHHh
Q 043188          179 NNYGKTPLYMAAD  191 (197)
Q Consensus       179 ~~~g~tpl~~A~~  191 (197)
                      |..| ||+..|+.
T Consensus       202 dke~-t~~~~a~~  213 (226)
T KOG4412|consen  202 DKEG-TALRIACN  213 (226)
T ss_pred             cccC-chHHHHHH
Confidence            8888 99988763

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=9.8e-29  Score=181.33  Aligned_cols=149  Identities=13%  Similarity=0.039  Sum_probs=104.0

Q ss_pred             cCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHH
Q 043188           35 AGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVR  114 (197)
Q Consensus        35 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  114 (197)
                      .++.+++++|+++|.+  .+|..|.||||+|+  ..|+.+++++|++.    +++.+.++  +.||||+|+..++.++++
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa--~~g~~eiv~~Ll~~----ga~~n~~d--~~TpLh~Aa~~g~~eiV~   78 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAI--ADNNVRLVCTLLNA----GALKNLLE--NEFPLHQAATLEDTKIVK   78 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHH--HcCCHHHHHHHHHC----cCCCcCCC--CCCHHHHHHHCCCHHHHH
Confidence            4678899999998774  58889999999999  99999999999885    76666654  689999999999999999


Q ss_pred             HHHHcCCCCccchhhHHhhHHHH---------------HHHhhccCCCCc-hHHHHHHhcCCHHHHHHHhhcCCCccccc
Q 043188          115 VLVERAKLPQHENEELESRVGAA---------------RQMIRMTNNEKN-TALHEAVCHQNVDVVELLTKEDPDYQYSA  178 (197)
Q Consensus       115 ~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  178 (197)
                      +|+..|++++..+..+..++..+               +.+++..+..|+ ||||+|+..++.+++++|++.+++..  .
T Consensus        79 lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~--d  156 (284)
T PHA02791         79 ILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--D  156 (284)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc--c
Confidence            99999999887444433333321               122333444443 56666666666666666665554321  1


Q ss_pred             ccCCCcHHHHHHhcccC
Q 043188          179 NNYGKTPLYMAADYRSS  195 (197)
Q Consensus       179 ~~~g~tpl~~A~~~~~~  195 (197)
                      ...|.||||+|+..|+.
T Consensus       157 ~~~g~TpLh~Aa~~g~~  173 (284)
T PHA02791        157 LAILLSCIHITIKNGHV  173 (284)
T ss_pred             cccCccHHHHHHHcCCH
Confidence            12356666666666654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.5e-28  Score=192.24  Aligned_cols=168  Identities=20%  Similarity=0.292  Sum_probs=149.4

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..+.||||+|+..|+.+.+++|++.|.+++.++..|.||||+|+  ..++.+++++|++.    +.+++..+..|.|
T Consensus       119 ~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~--~~~~~~iv~~Ll~~----g~~~n~~~~~g~t  192 (434)
T PHA02874        119 IKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI--KHNFFDIIKLLLEK----GAYANVKDNNGES  192 (434)
T ss_pred             CCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH--HCCcHHHHHHHHHC----CCCCCCCCCCCCC
Confidence            45678899999999999999999999999999999999999999999  99999999999886    8888999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH-------------HHHhhccCCCCchHHHHHHhcC-CHHHHH
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA-------------RQMIRMTNNEKNTALHEAVCHQ-NVDVVE  165 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~g~t~l~~a~~~~-~~~~~~  165 (197)
                      |||+|+..++.+++++|++.|+++......+..++..+             +..++..+..|.||||+|+..+ +.++++
T Consensus       193 pL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~  272 (434)
T PHA02874        193 PLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIID  272 (434)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHH
Confidence            99999999999999999999998877665555444432             2346778889999999999875 789999


Q ss_pred             HHhhcCCCcccccccCCCcHHHHHHhccc
Q 043188          166 LLTKEDPDYQYSANNYGKTPLYMAADYRS  194 (197)
Q Consensus       166 ~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~  194 (197)
                      +|++.|++++ .++..|.|||++|+++++
T Consensus       273 ~Ll~~gad~n-~~d~~g~TpL~~A~~~~~  300 (434)
T PHA02874        273 ILLYHKADIS-IKDNKGENPIDTAFKYIN  300 (434)
T ss_pred             HHHHCcCCCC-CCCCCCCCHHHHHHHhCC
Confidence            9999999998 999999999999998763

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=1.8e-28  Score=188.84  Aligned_cols=152  Identities=21%  Similarity=0.153  Sum_probs=120.9

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhccc-ccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTA-KTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      .+.+|-++||+|+.+++++++|+|+++|.++|..+ ..+.||||||+  +.|+..++.+|+++    |++++.+|..|.+
T Consensus        74 ~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAa--r~G~~~vv~lLlqh----GAdpt~~D~~G~~  147 (600)
T KOG0509|consen   74 PDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAA--RNGHISVVDLLLQH----GADPTLKDKQGLT  147 (600)
T ss_pred             CCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHH--HcCcHHHHHHHHHc----CCCCceecCCCCc
Confidence            44477788888888888888888888888887443 67788888888  88888888888886    8888888888888


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccc
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSAN  179 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  179 (197)
                      |+|+|+++++.-.+-+|+..+++++.                  +|..|+||||+|+..|+...++.|++.|+.+....+
T Consensus       148 ~lHla~~~~~~~~vayll~~~~d~d~------------------~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~  209 (600)
T KOG0509|consen  148 PLHLAAQFGHTALVAYLLSKGADIDL------------------RDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDD  209 (600)
T ss_pred             HHHHHHHhCchHHHHHHHHhcccCCC------------------cCCCCCCHHHHHHHhcccHHHHHHHHhccccccccc
Confidence            88888888888888888888777665                  888888888888888888778888888888874444


Q ss_pred             cCCCcHHHHHHhcccCC
Q 043188          180 NYGKTPLYMAADYRSSN  196 (197)
Q Consensus       180 ~~g~tpl~~A~~~~~~~  196 (197)
                      .+|.||||+|+..|+..
T Consensus       210 ~~g~TpLHwa~~~gN~~  226 (600)
T KOG0509|consen  210 NHGNTPLHWAVVGGNLT  226 (600)
T ss_pred             ccCCchHHHHHhcCCcc
Confidence            78888888888887753

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=9.8e-28  Score=169.95  Aligned_cols=153  Identities=14%  Similarity=0.149  Sum_probs=116.4

Q ss_pred             cccccccCCHHHHHHHHcC--CcHHHHHHHHHHHHHhccc-ccCCcHHHHHHHh-hhcccccHHHHHHHHHhCCcccccC
Q 043188           18 GEISQSQIDPNLFKAAAAG--NLEPFKDMAREVIERLLTA-KTKNTILHINIIS-QERENVSTKFVAEILEKCPSLLLQV   93 (197)
Q Consensus        18 ~~~~~~~~~~~l~~a~~~g--~~~~v~~Ll~~g~~~~~~~-~~g~t~lh~a~~~-~~~~~~~~~~l~~~l~~~~~~~~~~   93 (197)
                      ....+..+.||||.|+..+  +.++++.|++.|.+++.++ ..|.||||+|+.. ..++.+++++|++.    +++++.+
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~----gadin~~  119 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS----GSSITEE  119 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHC----CCCCCCc
Confidence            3345566777888887754  6778888888887777654 4677888877621 12356666666664    7777777


Q ss_pred             CCCCCcHHHHHHHh--CCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHH-HHhcCCHHHHHHHhhc
Q 043188           94 NAKGDTPLHVAAKF--GHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHE-AVCHQNVDVVELLTKE  170 (197)
Q Consensus        94 ~~~~~t~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~Ll~~  170 (197)
                      +..|.||||+|+..  ++.+++++|++.|+++..                  .|..|.||||. ++..++.+++++|++.
T Consensus       120 d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~------------------~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~  181 (209)
T PHA02859        120 DEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN------------------KDFDNNNILYSYILFHSDKKIFDFLTSL  181 (209)
T ss_pred             CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc------------------ccCCCCcHHHHHHHhcCCHHHHHHHHHc
Confidence            77888888877653  467788888888777665                  88999999996 5678899999999999


Q ss_pred             CCCcccccccCCCcHHHHHHhcc
Q 043188          171 DPDYQYSANNYGKTPLYMAADYR  193 (197)
Q Consensus       171 g~~~~~~~~~~g~tpl~~A~~~~  193 (197)
                      |++++ .+|..|.||+++|...+
T Consensus       182 Gadi~-~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        182 GIDIN-ETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCCCC-CCCCCCCCHHHHHhhhh
Confidence            99998 99999999999998765

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.95  E-value=9.2e-28  Score=186.83  Aligned_cols=170  Identities=16%  Similarity=0.158  Sum_probs=114.2

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCccc-ccCCCCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLL-LQVNAKGD   98 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~   98 (197)
                      .....|.||||.|+..|+.++++.|++.|.+++..+..+.||||+|+  ..|+.++++.|++.    +... +..+..|.
T Consensus        30 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~----~~~~~~~~~~~g~  103 (413)
T PHA02875         30 FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAV--EEGDVKAVEELLDL----GKFADDVFYKDGM  103 (413)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHH--HCCCHHHHHHHHHc----CCcccccccCCCC
Confidence            34456788888888888888888888888777666667788888888  88888887777764    3332 33455677


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------------HHHhhccCCCCchHHHHHHhcCCHHH
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------------RQMIRMTNNEKNTALHEAVCHQNVDV  163 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~a~~~~~~~~  163 (197)
                      ||||+|+..++.+++++|++.|+++...+..+.+++..+               +..++..+..|.||||+|+..|+.++
T Consensus       104 tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~ei  183 (413)
T PHA02875        104 TPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAI  183 (413)
T ss_pred             CHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            888888888888888888888877766433332222211               12234456667777777777777777


Q ss_pred             HHHHhhcCCCcccccccCC-CcHHHHHHhcccCC
Q 043188          164 VELLTKEDPDYQYSANNYG-KTPLYMAADYRSSN  196 (197)
Q Consensus       164 ~~~Ll~~g~~~~~~~~~~g-~tpl~~A~~~~~~~  196 (197)
                      +++|++.|++++ ..+..| .||+++|+..|+.+
T Consensus       184 v~~Ll~~ga~~n-~~~~~~~~t~l~~A~~~~~~~  216 (413)
T PHA02875        184 CKMLLDSGANID-YFGKNGCVAALCYAIENNKID  216 (413)
T ss_pred             HHHHHhCCCCCC-cCCCCCCchHHHHHHHcCCHH
Confidence            777777777766 444443 46666676666543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=7.3e-28  Score=190.74  Aligned_cols=170  Identities=19%  Similarity=0.218  Sum_probs=148.3

Q ss_pred             cccccCCHHHHHHH--HcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhc--ccccHHHHHHHHHhCCcccccCCC
Q 043188           20 ISQSQIDPNLFKAA--AAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQER--ENVSTKFVAEILEKCPSLLLQVNA   95 (197)
Q Consensus        20 ~~~~~~~~~l~~a~--~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~   95 (197)
                      ..+..|.||||.|+  ..|+.++++.|++.|.+++..+..|.||||+|+  ..+  +.+++++|++.    +++++.++.
T Consensus       101 ~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~~iv~~Ll~~----g~din~~d~  174 (480)
T PHA03100        101 APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYL--ESNKIDLKILKLLIDK----GVDINAKNR  174 (480)
T ss_pred             CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHH--HcCCChHHHHHHHHHC----CCCcccccC
Confidence            45667899999999  999999999999999999888999999999999  999  89999999886    888999999


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhH------Hhh-----------------HHHHHHHhhccCCCCchHH
Q 043188           96 KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEEL------ESR-----------------VGAARQMIRMTNNEKNTAL  152 (197)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~------~~~-----------------~~~~~~~~~~~~~~g~t~l  152 (197)
                      .|.||||+|+..++.+++++|++.|+++.......      ..+                 +...+.+++..|..|.|||
T Consensus       175 ~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL  254 (480)
T PHA03100        175 YGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPL  254 (480)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            99999999999999999999999999887654322      111                 1122345677889999999


Q ss_pred             HHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          153 HEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       153 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      |+|+..++.+++++|++.|++++ .++..|.||+++|+..++.+
T Consensus       255 ~~A~~~~~~~iv~~Ll~~gad~n-~~d~~g~tpl~~A~~~~~~~  297 (480)
T PHA03100        255 HYAVYNNNPEFVKYLLDLGANPN-LVNKYGDTPLHIAILNNNKE  297 (480)
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHhCCHH
Confidence            99999999999999999999998 99999999999999887653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.5e-27  Score=186.63  Aligned_cols=171  Identities=18%  Similarity=0.137  Sum_probs=133.6

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHH-----------------
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI-----------------   82 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~-----------------   82 (197)
                      .....+.|||+.|+..|+.++|++|++.|++++..+..|.||||+|+  ..|+.+++++|++.                 
T Consensus        30 ~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~--~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i  107 (434)
T PHA02874         30 ISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAI--KIGAHDIIKLLIDNGVDTSILPIPCIEKDMI  107 (434)
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCCCcchhccCCHHHH
Confidence            35567889999999999999999999999999888889999999999  99999999988763                 


Q ss_pred             --HHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------------HHHhhccC
Q 043188           83 --LEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------------RQMIRMTN  145 (197)
Q Consensus        83 --l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~  145 (197)
                        +...+.+++.++..|.||||+|+..++.+++++|++.|++++..+..+..++..+               +...+..+
T Consensus       108 ~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~  187 (434)
T PHA02874        108 KTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD  187 (434)
T ss_pred             HHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC
Confidence              2334566788888999999999999999999999999998877544443333322               22334556


Q ss_pred             CCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcc
Q 043188          146 NEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYR  193 (197)
Q Consensus       146 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~  193 (197)
                      ..|.||||+|+..|+.+++++|++.|+++. .++..|.||||+|+..+
T Consensus       188 ~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~-~~~~~g~TpL~~A~~~~  234 (434)
T PHA02874        188 NNGESPLHNAAEYGDYACIKLLIDHGNHIM-NKCKNGFTPLHNAIIHN  234 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHHHHHCC
Confidence            667777777777777777777777777766 66667777777776654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.5e-27  Score=187.98  Aligned_cols=172  Identities=14%  Similarity=0.111  Sum_probs=140.6

Q ss_pred             cccccCCHHHHHHHHc---CCcHHHHHHHHHHHHH-hcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCccccc-CC
Q 043188           20 ISQSQIDPNLFKAAAA---GNLEPFKDMAREVIER-LLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQ-VN   94 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~---g~~~~v~~Ll~~g~~~-~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~   94 (197)
                      ..+..|.|||+.|+..   |+.++++.|+++|+++ +.++..|.||||+|+....++.+++++|++.    |++++. .+
T Consensus       103 ~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~----Gadi~~~~~  178 (494)
T PHA02989        103 LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF----GVNLFEKTS  178 (494)
T ss_pred             CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc----CCCcccccc
Confidence            4566788999988765   6789999999999999 6888899999999882223577888888886    888877 57


Q ss_pred             CCCCcHHHHHHHhC----CHHHHHHHHHcCCCCccchhhHHhhHHH--------------------HHHHhhccCCCCch
Q 043188           95 AKGDTPLHVAAKFG----HSDIVRVLVERAKLPQHENEELESRVGA--------------------ARQMIRMTNNEKNT  150 (197)
Q Consensus        95 ~~~~t~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~g~t  150 (197)
                      ..|.||||+|+..+    +.+++++|++.|++++..+....+.+..                    .+.+++..|..|+|
T Consensus       179 ~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~T  258 (494)
T PHA02989        179 LYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFN  258 (494)
T ss_pred             ccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCC
Confidence            78999999987764    7899999999999887765433333321                    12346778899999


Q ss_pred             HHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          151 ALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       151 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      |||+|+..++.+++++|++.|++++ .++..|.|||++|+..|+.+
T Consensus       259 pL~~Aa~~~~~~~v~~LL~~Gadin-~~d~~G~TpL~~A~~~~~~~  303 (494)
T PHA02989        259 PLLISAKVDNYEAFNYLLKLGDDIY-NVSKDGDTVLTYAIKHGNID  303 (494)
T ss_pred             HHHHHHHhcCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999999998 99999999999999998754

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5.4e-27  Score=185.45  Aligned_cols=147  Identities=22%  Similarity=0.244  Sum_probs=107.9

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHH----------------------
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAE----------------------   81 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~----------------------   81 (197)
                      .+.+|||.|+..|+.++|+.|++.|.+++.+|..|.||||+||  ..|+.++++.|++                      
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~  113 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIIC--KEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRN  113 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HCccHhHHHHHHHHHhccccccchhhHHHHHHcCC
Confidence            5678999999999999999999999999999999999999999  7766554443332                      


Q ss_pred             --------------------------------------HHHhCCcccccCCCC-CCcHHHHHHHhCCHHHHHHHHHcCCC
Q 043188           82 --------------------------------------ILEKCPSLLLQVNAK-GDTPLHVAAKFGHSDIVRVLVERAKL  122 (197)
Q Consensus        82 --------------------------------------~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~ll~~~~~  122 (197)
                                                            .+.+.+++++.++.. |.||||+|+..++.+++++|++.|++
T Consensus       114 ~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad  193 (477)
T PHA02878        114 VEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN  193 (477)
T ss_pred             HHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC
Confidence                                                  233346778888887 99999999999999999999999999


Q ss_pred             CccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHh
Q 043188          123 PQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD  191 (197)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~  191 (197)
                      ++.                  .+..|.||||.|+..++.+++++|++.|++++ .+|..|.||||+|+.
T Consensus       194 ~n~------------------~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in-~~d~~g~TpLh~A~~  243 (477)
T PHA02878        194 VNI------------------PDKTNNSPLHHAVKHYNKPIVHILLENGASTD-ARDKCGNTPLHISVG  243 (477)
T ss_pred             CCC------------------cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHH
Confidence            876                  44445555555555555555555555555544 444455555555443

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=8.4e-27  Score=181.47  Aligned_cols=146  Identities=18%  Similarity=0.164  Sum_probs=105.8

Q ss_pred             ccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHH
Q 043188           23 SQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLH  102 (197)
Q Consensus        23 ~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~  102 (197)
                      ..|.||||.|+..|+.++++.|++.|++++.++..|.||||+|+  ..|+.+++++|++.    +++++.++..|.||||
T Consensus       100 ~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~--~~~~~~~v~~Ll~~----g~~~~~~d~~g~TpL~  173 (413)
T PHA02875        100 KDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAV--MMGDIKGIELLIDH----KACLDIEDCCGCTPLI  173 (413)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHhc----CCCCCCCCCCCCCHHH
Confidence            34666677777777777777777766666666666677777777  66666666666664    6666666666777777


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCC-chHHHHHHhcCCHHHHHHHhhcCCCccc--ccc
Q 043188          103 VAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK-NTALHEAVCHQNVDVVELLTKEDPDYQY--SAN  179 (197)
Q Consensus       103 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~g~~~~~--~~~  179 (197)
                      +|+..++.+++++|++.|++++.                  .+..| .||+|+|+..++.+++++|+++|++++.  ..+
T Consensus       174 ~A~~~g~~eiv~~Ll~~ga~~n~------------------~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~  235 (413)
T PHA02875        174 IAMAKGDIAICKMLLDSGANIDY------------------FGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIE  235 (413)
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCc------------------CCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcC
Confidence            77777777777777777666554                  55555 5899999999999999999999999872  235


Q ss_pred             cCCCcHHHHHHhc
Q 043188          180 NYGKTPLYMAADY  192 (197)
Q Consensus       180 ~~g~tpl~~A~~~  192 (197)
                      ..+.||+++++..
T Consensus       236 ~~~~t~l~~~~~~  248 (413)
T PHA02875        236 GEECTILDMICNM  248 (413)
T ss_pred             CCchHHHHHHHhh
Confidence            6788999988754

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.1e-26  Score=183.59  Aligned_cols=146  Identities=21%  Similarity=0.207  Sum_probs=133.5

Q ss_pred             cccc-CCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           21 SQSQ-IDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        21 ~~~~-~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      .+.. |.||||+|+..|+.++++.|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +++++.++..|.|
T Consensus       163 ~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~--~~~~~~iv~~Ll~~----ga~in~~d~~g~T  236 (477)
T PHA02878        163 KDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAV--KHYNKPIVHILLEN----GASTDARDKCGNT  236 (477)
T ss_pred             cCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH--HhCCHHHHHHHHHc----CCCCCCCCCCCCC
Confidence            3444 899999999999999999999999999999999999999999  99999999999986    8999999999999


Q ss_pred             HHHHHHHh-CCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccC-CCCchHHHHHHhcCCHHHHHHHhhcCCCcccc
Q 043188          100 PLHVAAKF-GHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTN-NEKNTALHEAVCHQNVDVVELLTKEDPDYQYS  177 (197)
Q Consensus       100 ~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  177 (197)
                      |||+|+.. ++.+++++|++.|++++.                  .+ ..|.||||+|  .++.+++++|++.|++++ .
T Consensus       237 pLh~A~~~~~~~~iv~~Ll~~gadvn~------------------~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin-~  295 (477)
T PHA02878        237 PLHISVGYCKDYDILKLLLEHGVDVNA------------------KSYILGLTALHSS--IKSERKLKLLLEYGADIN-S  295 (477)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCc------------------cCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCC-C
Confidence            99999976 689999999999999876                  54 4799999999  467899999999999998 9


Q ss_pred             cccCCCcHHHHHHhcc
Q 043188          178 ANNYGKTPLYMAADYR  193 (197)
Q Consensus       178 ~~~~g~tpl~~A~~~~  193 (197)
                      .+..|.|||++|+..+
T Consensus       296 ~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        296 LNSYKLTPLSSAVKQY  311 (477)
T ss_pred             cCCCCCCHHHHHHHHc
Confidence            9999999999998754

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=5.7e-27  Score=185.23  Aligned_cols=56  Identities=23%  Similarity=0.262  Sum_probs=48.6

Q ss_pred             HhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          140 MIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       140 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      +++..|..|.||||+|+..|+.+++++|++.|++++ .++..|.|||++|+..|+.+
T Consensus       249 din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n-~~~~~g~tpl~~A~~~~~~~  304 (471)
T PHA03095        249 SINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN-AVSSDGNTPLSLMVRNNNGR  304 (471)
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHhCCHH
Confidence            356678889999999999999999999999999988 88999999999999887753

>PHA02946 ankyin-like protein; Provisional

Probab=99.94  E-value=2.1e-26  Score=179.76  Aligned_cols=166  Identities=16%  Similarity=0.132  Sum_probs=119.2

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhc--ccccHHHHHHHHHhCCccccc-CCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQER--ENVSTKFVAEILEKCPSLLLQ-VNAK   96 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~--~~~~~~~l~~~l~~~~~~~~~-~~~~   96 (197)
                      ..+..|.||||+|+..|+.++++.|+++|++++.+|..|.||||+|+  ..+  ..+++++|++.    +++++. .+..
T Consensus        67 ~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~--~~~~~~~e~v~lLl~~----Gadin~~~d~~  140 (446)
T PHA02946         67 ETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLS--GTDDEVIERINLLVQY----GAKINNSVDEE  140 (446)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHH--HcCCchHHHHHHHHHc----CCCcccccCCC
Confidence            45667788888888888888888888888888878888888888877  544  35667777664    666664 5677


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHH-----------------HHHHhhccCCCCchHHHHHHhcC
Q 043188           97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA-----------------ARQMIRMTNNEKNTALHEAVCHQ  159 (197)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~g~t~l~~a~~~~  159 (197)
                      |.|||| |+..++.+++++|++.|+++...+..+..++..                 .+.+++..|..|.||||+|+..+
T Consensus       141 g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~  219 (446)
T PHA02946        141 GCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKT  219 (446)
T ss_pred             CCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            888886 555677788888888877776655444333321                 23345567778888888888765


Q ss_pred             --CHHHHHHHhhcCCCcccccccCCCcHHHHHHhccc
Q 043188          160 --NVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRS  194 (197)
Q Consensus       160 --~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~  194 (197)
                        +.+++++|+. |++++ .+|..|.||||+|+..++
T Consensus       220 ~~~~~iv~lLl~-gadin-~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        220 VKNVDIINLLLP-STDVN-KQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             CCcHHHHHHHHc-CCCCC-CCCCCCCCHHHHHHHhCC
Confidence              6778887774 77777 788888888888887654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=1.4e-26  Score=178.51  Aligned_cols=146  Identities=24%  Similarity=0.285  Sum_probs=138.0

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHH-HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCC-CCCCcHHHH
Q 043188           26 DPNLFKAAAAGNLEPFKDMARE-VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVN-AKGDTPLHV  103 (197)
Q Consensus        26 ~~~l~~a~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~t~l~~  103 (197)
                      -..+..|++.|.++.++.+++. |.+++..|.+|.++||||+  ..++.+++++|+++    ++++|..+ ..+.||||+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAA--iNNrl~v~r~li~~----gadvn~~gG~l~stPLHW  118 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAA--INNRLDVARYLISH----GADVNAIGGVLGSTPLHW  118 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHH--HcCcHHHHHHHHHc----CCCccccCCCCCCCcchH
Confidence            4669999999999999999998 8888899999999999999  99999999999997    99999998 458899999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCC
Q 043188          104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGK  183 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  183 (197)
                      |+++|+..++.+|+++|+++..                  .|..|.+|+|.|++.++...+-+|+-.|++++ .+|..|+
T Consensus       119 Aar~G~~~vv~lLlqhGAdpt~------------------~D~~G~~~lHla~~~~~~~~vayll~~~~d~d-~~D~~gr  179 (600)
T KOG0509|consen  119 AARNGHISVVDLLLQHGADPTL------------------KDKQGLTPLHLAAQFGHTALVAYLLSKGADID-LRDNNGR  179 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCCCce------------------ecCCCCcHHHHHHHhCchHHHHHHHHhcccCC-CcCCCCC
Confidence            9999999999999999999987                  99999999999999999999999999999998 9999999


Q ss_pred             cHHHHHHhcccCC
Q 043188          184 TPLYMAADYRSSN  196 (197)
Q Consensus       184 tpl~~A~~~~~~~  196 (197)
                      |||++|+.+|...
T Consensus       180 TpLmwAaykg~~~  192 (600)
T KOG0509|consen  180 TPLMWAAYKGFAL  192 (600)
T ss_pred             CHHHHHHHhcccH
Confidence            9999999988753

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.5e-26  Score=182.06  Aligned_cols=55  Identities=24%  Similarity=0.241  Sum_probs=51.0

Q ss_pred             HhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccC
Q 043188          140 MIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       140 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                      +++..|..|.||||+|+..++.+++++|++.|++++ .++..|.|||++|+..++.
T Consensus       250 dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin-~~d~~G~TpL~~A~~~~~~  304 (489)
T PHA02798        250 DINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDIN-IITELGNTCLFTAFENESK  304 (489)
T ss_pred             CCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccc-ccCCCCCcHHHHHHHcCcH
Confidence            456788899999999999999999999999999998 9999999999999988764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2.2e-25  Score=157.92  Aligned_cols=147  Identities=14%  Similarity=0.140  Sum_probs=125.2

Q ss_pred             cccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCC-CCCCcH
Q 043188           22 QSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVN-AKGDTP  100 (197)
Q Consensus        22 ~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~t~  100 (197)
                      .+...+||+.|+..|+.+.|+.|++.   ++..+..|.||||+|+.+..++.+++++|++.    +++++.++ ..|.||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~----gadvn~~~~~~g~Tp   90 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIEN----GADVNFKTRDNNLSA   90 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHC----CCCCCccCCCCCCCH
Confidence            45668899999999999999999975   34578899999999992223478999999986    89999987 479999


Q ss_pred             HHHHHHh---CCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHh--cCCHHHHHHHhhcCCCcc
Q 043188          101 LHVAAKF---GHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVC--HQNVDVVELLTKEDPDYQ  175 (197)
Q Consensus       101 l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~g~~~~  175 (197)
                      ||+|+..   ++.+++++|+++|++++.                  .+..|.||||.|+.  .++.+++++|++.|++++
T Consensus        91 Lh~a~~~~~~~~~eiv~~Ll~~gadin~------------------~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin  152 (209)
T PHA02859         91 LHHYLSFNKNVEPEILKILIDSGSSITE------------------EDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL  152 (209)
T ss_pred             HHHHHHhCccccHHHHHHHHHCCCCCCC------------------cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc
Confidence            9998764   468999999999999876                  89999999999876  468999999999999998


Q ss_pred             cccccCCCcHHHHH-Hhccc
Q 043188          176 YSANNYGKTPLYMA-ADYRS  194 (197)
Q Consensus       176 ~~~~~~g~tpl~~A-~~~~~  194 (197)
                       .+|..|.||||.+ +..++
T Consensus       153 -~~d~~g~t~Lh~~a~~~~~  171 (209)
T PHA02859        153 -NKDFDNNNILYSYILFHSD  171 (209)
T ss_pred             -cccCCCCcHHHHHHHhcCC
Confidence             8999999999964 44444

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.93  E-value=5.3e-26  Score=180.12  Aligned_cols=151  Identities=23%  Similarity=0.232  Sum_probs=124.6

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHH-----HHHhhhcccccHHHHHHHHHhCCcccccCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHI-----NIISQERENVSTKFVAEILEKCPSLLLQVN   94 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~-----a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~   94 (197)
                      .....+.+|||.|+..|+.++|+.|++.|.+++..+..+.||||+     |+  ..++.+++++|++.    +++++..+
T Consensus        30 ~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~--~~~~~~iv~~Ll~~----ga~i~~~d  103 (480)
T PHA03100         30 YSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYN--LTDVKEIVKLLLEY----GANVNAPD  103 (480)
T ss_pred             hhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH--hhchHHHHHHHHHC----CCCCCCCC
Confidence            456678899999999999999999999999998888899999999     99  99999999999986    88889999


Q ss_pred             CCCCcHHHHHH--HhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcC--CHHHHHHHhhc
Q 043188           95 AKGDTPLHVAA--KFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQ--NVDVVELLTKE  170 (197)
Q Consensus        95 ~~~~t~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~  170 (197)
                      ..|.||||+|+  ..++.+++++|++.|+++..                  .+..|.||||+|+..+  +.+++++|++.
T Consensus       104 ~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~  165 (480)
T PHA03100        104 NNGITPLLYAISKKSNSYSIVEYLLDNGANVNI------------------KNSDGENLLHLYLESNKIDLKILKLLIDK  165 (480)
T ss_pred             CCCCchhhHHHhcccChHHHHHHHHHcCCCCCc------------------cCCCCCcHHHHHHHcCCChHHHHHHHHHC
Confidence            99999999999  99999999999999998776                  5556666666666666  66666666666


Q ss_pred             CCCcccccccCCCcHHHHHHhcccC
Q 043188          171 DPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       171 g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                      |++++ .++..|.||||+|+..|+.
T Consensus       166 g~din-~~d~~g~tpL~~A~~~~~~  189 (480)
T PHA03100        166 GVDIN-AKNRYGYTPLHIAVEKGNI  189 (480)
T ss_pred             CCCcc-cccCCCCCHHHHHHHhCCH
Confidence            66655 5555666666666665543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=3.8e-26  Score=170.79  Aligned_cols=159  Identities=29%  Similarity=0.320  Sum_probs=145.2

Q ss_pred             hccCCCCcccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCccc
Q 043188           11 ASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLL   90 (197)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~   90 (197)
                      ...+..+|.  .-+|.+||.-|+..|++++|+.|+.+|.++|.+..+..|||-.||  .-|+.+++++|+++    ++++
T Consensus        72 ~GsV~FDge--~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraAC--fDG~leivKyLvE~----gad~  143 (615)
T KOG0508|consen   72 GGSVRFDGE--TIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAAC--FDGHLEIVKYLVEH----GADP  143 (615)
T ss_pred             CceEEeCCc--ccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHH--hcchhHHHHHHHHc----CCCC
Confidence            344444433  457899999999999999999999999999977778889999999  99999999999997    9999


Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhc
Q 043188           91 LQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE  170 (197)
Q Consensus        91 ~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  170 (197)
                      +..|..|.|.|++|+..|+.+++++|++.|++++.                  .+..|+|+||.+++.|+.+++++|++.
T Consensus       144 ~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~------------------ks~kGNTALH~caEsG~vdivq~Ll~~  205 (615)
T KOG0508|consen  144 EIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNA------------------KSYKGNTALHDCAESGSVDIVQLLLKH  205 (615)
T ss_pred             cccccCCCeeEEeeeccCchHHHHHHHHhCCCcch------------------hcccCchHHHhhhhcccHHHHHHHHhC
Confidence            99999999999999999999999999999999887                  999999999999999999999999999


Q ss_pred             CCCcccccccCCCcHHHHHHhcccCCC
Q 043188          171 DPDYQYSANNYGKTPLYMAADYRSSNM  197 (197)
Q Consensus       171 g~~~~~~~~~~g~tpl~~A~~~~~~~i  197 (197)
                      |+.+.  +|.+|.|||..|+..|..++
T Consensus       206 ga~i~--~d~~GmtPL~~Aa~tG~~~i  230 (615)
T KOG0508|consen  206 GAKID--VDGHGMTPLLLAAVTGHTDI  230 (615)
T ss_pred             Cceee--ecCCCCchHHHHhhhcchHH
Confidence            99985  88889999999999988653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=1.7e-25  Score=186.46  Aligned_cols=148  Identities=19%  Similarity=0.235  Sum_probs=113.7

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..++.+.++|+.|+..|+.+.++.|++.|.+++..|..|.||||+|+  ..|+.+++++|++.    +++++.+|..|.|
T Consensus       520 ~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa--~~g~~~~v~~Ll~~----gadin~~d~~G~T  593 (823)
T PLN03192        520 HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAA--SKGYEDCVLVLLKH----ACNVHIRDANGNT  593 (823)
T ss_pred             cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcChHHHHHHHHhc----CCCCCCcCCCCCC
Confidence            45556788999999999999999999999999999999999999999  99999999999886    8899999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccc
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSAN  179 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  179 (197)
                      |||+|+..++.+++++|++.+.....                    ..+.++||.|+..|+.+++++|+++|++++ .+|
T Consensus       594 pL~~A~~~g~~~iv~~L~~~~~~~~~--------------------~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin-~~d  652 (823)
T PLN03192        594 ALWNAISAKHHKIFRILYHFASISDP--------------------HAAGDLLCTAAKRNDLTAMKELLKQGLNVD-SED  652 (823)
T ss_pred             HHHHHHHhCCHHHHHHHHhcCcccCc--------------------ccCchHHHHHHHhCCHHHHHHHHHCCCCCC-CCC
Confidence            99999999999999999987665432                    233345555555555555555555555544 445


Q ss_pred             cCCCcHHHHHHhccc
Q 043188          180 NYGKTPLYMAADYRS  194 (197)
Q Consensus       180 ~~g~tpl~~A~~~~~  194 (197)
                      ..|.||||+|+..|+
T Consensus       653 ~~G~TpLh~A~~~g~  667 (823)
T PLN03192        653 HQGATALQVAMAEDH  667 (823)
T ss_pred             CCCCCHHHHHHHCCc
Confidence            555555555554443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=3.8e-25  Score=174.54  Aligned_cols=156  Identities=21%  Similarity=0.235  Sum_probs=136.1

Q ss_pred             CcccccccCCHHHHHHHHcCCcHHHHHHHHHHHH---------------HhcccccCCcHHHHHHHhhhcccccHHHHHH
Q 043188           17 NGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIE---------------RLLTAKTKNTILHINIISQERENVSTKFVAE   81 (197)
Q Consensus        17 ~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~   81 (197)
                      ..+..++++.+|||.|++.|++++++.+|+.|..               ++..|.+|.|||||||  +.|+++++..|+.
T Consensus       217 ~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~--r~G~~~svd~Ll~  294 (929)
T KOG0510|consen  217 HINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAA--RQGGPESVDNLLG  294 (929)
T ss_pred             ccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHH--HcCChhHHHHHHH
Confidence            3446788999999999999999999999984321               1246789999999999  9999999999999


Q ss_pred             HHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHH-cCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCC
Q 043188           82 ILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVE-RAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQN  160 (197)
Q Consensus        82 ~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~  160 (197)
                      +    |++++.++.++.||||.|+.+|+..+++-|++ .+..                 +++..|..|.||||+|++.|+
T Consensus       295 ~----Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~r-----------------llne~D~~g~tpLHlaa~~gH  353 (929)
T KOG0510|consen  295 F----GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTR-----------------LLNESDLHGMTPLHLAAKSGH  353 (929)
T ss_pred             c----CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcc-----------------ccccccccCCCchhhhhhcCH
Confidence            7    99999999999999999999999999999999 3222                 244688899999999999999


Q ss_pred             HHHHHHHhhcCCCccc--ccccCCCcHHHHHHhcccC
Q 043188          161 VDVVELLTKEDPDYQY--SANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       161 ~~~~~~Ll~~g~~~~~--~~~~~g~tpl~~A~~~~~~  195 (197)
                      ..++++|++.|+...+  ..|..|.||||.|+.+|+.
T Consensus       354 ~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  354 DRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNT  390 (929)
T ss_pred             HHHHHHHHhcChhhhcccccccCCchhhhHHHHhccH
Confidence            9999999999998775  4599999999999999874

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.92  E-value=6.6e-25  Score=180.31  Aligned_cols=166  Identities=18%  Similarity=0.186  Sum_probs=128.2

Q ss_pred             ccccCCHHHHHHHHcC-CcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhc-ccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           21 SQSQIDPNLFKAAAAG-NLEPFKDMAREVIERLLTAKTKNTILHINIISQER-ENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      .+..|.||||.|+..| +.+.++.|+..|.+++..+..|.||||+|+  ..+ ..+++++|++    .+.+++.++..|.
T Consensus       303 ~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~--~~~~~~~iv~lLl~----~gadin~~d~~G~  376 (682)
T PHA02876        303 KNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAS--TLDRNKDIVITLLE----LGANVNARDYCDK  376 (682)
T ss_pred             cCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHH--HhCCcHHHHHHHHH----cCCCCccCCCCCC
Confidence            4455666777777766 466677777777666666667777777776  543 4555555555    4888999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHH----------------HHHHhhccCCCCchHHHHHHhcC-CH
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA----------------ARQMIRMTNNEKNTALHEAVCHQ-NV  161 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~g~t~l~~a~~~~-~~  161 (197)
                      ||||+|+..++.+++++|++.|+++......+..++..                .+.+++..|..|+||||+|+..+ +.
T Consensus       377 TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~  456 (682)
T PHA02876        377 TPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKL  456 (682)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcH
Confidence            99999999999999999999999987755443333322                23456778999999999999876 68


Q ss_pred             HHHHHHhhcCCCcccccccCCCcHHHHHHhcc
Q 043188          162 DVVELLTKEDPDYQYSANNYGKTPLYMAADYR  193 (197)
Q Consensus       162 ~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~  193 (197)
                      +++++|++.|++++ .+|..|.||+++|+.++
T Consensus       457 ~iv~lLl~~Gad~n-~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        457 DVIEMLLDNGADVN-AINIQNQYPLLIALEYH  487 (682)
T ss_pred             HHHHHHHHCCCCCC-CCCCCCCCHHHHHHHhC
Confidence            99999999999998 99999999999998754

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=8.5e-25  Score=166.86  Aligned_cols=147  Identities=14%  Similarity=0.038  Sum_probs=130.3

Q ss_pred             ccccCCHHHHHHHH--cCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCc-ccccC----
Q 043188           21 SQSQIDPNLFKAAA--AGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS-LLLQV----   93 (197)
Q Consensus        21 ~~~~~~~~l~~a~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~-~~~~~----   93 (197)
                      .....+++||.++.  .|+.++|+.|+++|++++..  ++.||+|+|+  ..++.+++++|+..    |+ +.+..    
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~--~~~~~eIVk~Lls~----Ga~~~n~~~~~l  183 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGI--CKKESSVVEFILNC----GIPDENDVKLDL  183 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHH--HcCcHHHHHHHHhc----CCcccccccchh
Confidence            44568999999999  99999999999999998764  4589999999  99999999999886    54 22222    


Q ss_pred             -CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCC
Q 043188           94 -NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDP  172 (197)
Q Consensus        94 -~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  172 (197)
                       +..+.+++|.|...+..+++++|+.+|++++.                  .+..|.||||+|+..|+.+++++|++.|+
T Consensus       184 ~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~------------------kD~~G~TpLh~Aa~~g~~eiVelLL~~GA  245 (437)
T PHA02795        184 YKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ------------------LDAGGRTLLYRAIYAGYIDLVSWLLENGA  245 (437)
T ss_pred             hhhhccchhHHHHhcCHHHHHHHHHhCcCCcCc------------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence             12477899999999999999999999999876                  99999999999999999999999999999


Q ss_pred             CcccccccCCCcHHHHHHhccc
Q 043188          173 DYQYSANNYGKTPLYMAADYRS  194 (197)
Q Consensus       173 ~~~~~~~~~g~tpl~~A~~~~~  194 (197)
                      +++ .++..|.||||+|+..|+
T Consensus       246 dIN-~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        246 NVN-AVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             CCC-CcCCCCCCHHHHHHHcCC
Confidence            998 999999999999999884

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.92  E-value=6.9e-25  Score=177.54  Aligned_cols=159  Identities=16%  Similarity=0.108  Sum_probs=93.2

Q ss_pred             ccCCHHHHHHHHc--CCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhccc--ccHHHHHHHHHhCCcccccCCCCCC
Q 043188           23 SQIDPNLFKAAAA--GNLEPFKDMAREVIERLLTAKTKNTILHINIISQEREN--VSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        23 ~~~~~~l~~a~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ..|.||||.|+..  ++.+++++|++.|++++.+|..|.||||+|+  ..|+.  +++++|++.    |++++.++..|.
T Consensus       175 ~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa--~~g~~~~eIVklLLe~----GADVN~kD~~G~  248 (764)
T PHA02716        175 KTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYL--ITGNVCASVIKKIIEL----GGDMDMKCVNGM  248 (764)
T ss_pred             CCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcCCCCHHHHHHHHHc----CCCCCCCCCCCC
Confidence            3445555544322  3445555555555555555555555555555  44432  444444443    455555555555


Q ss_pred             cHHHH-------------------------------------HHHhCCHHHHHHHHHcCCCCccchhhHHhhHHH-----
Q 043188           99 TPLHV-------------------------------------AAKFGHSDIVRVLVERAKLPQHENEELESRVGA-----  136 (197)
Q Consensus        99 t~l~~-------------------------------------a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-----  136 (197)
                      ||||+                                     |+..++.+++++|++.|++++..+..+..++..     
T Consensus       249 TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~  328 (764)
T PHA02716        249 SPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRH  328 (764)
T ss_pred             CHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHh
Confidence            55542                                     244455555555555555444433333322221     


Q ss_pred             ------------HHHHhhccCCCCchHHHHHHh--------------cCCHHHHHHHhhcCCCcccccccCCCcHHHH
Q 043188          137 ------------ARQMIRMTNNEKNTALHEAVC--------------HQNVDVVELLTKEDPDYQYSANNYGKTPLYM  188 (197)
Q Consensus       137 ------------~~~~~~~~~~~g~t~l~~a~~--------------~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~  188 (197)
                                  .+.+++..|..|+||||+|+.              .++.+++++|++.|++++ .+|..|.||||.
T Consensus       329 ~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn-~kn~~G~TPLh~  405 (764)
T PHA02716        329 NISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADIT-AVNCLGYTPLTS  405 (764)
T ss_pred             CCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCC-CcCCCCCChHHH
Confidence                        112234589999999999865              368899999999999998 999999999994

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.92  E-value=1.5e-24  Score=175.52  Aligned_cols=153  Identities=18%  Similarity=0.148  Sum_probs=127.2

Q ss_pred             HcCCcHHHHHHHHHH-HHHhcc-cccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCC--
Q 043188           34 AAGNLEPFKDMAREV-IERLLT-AKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGH--  109 (197)
Q Consensus        34 ~~g~~~~v~~Ll~~g-~~~~~~-~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~--  109 (197)
                      ..++.+.+++|++.| ++++.. +..|.||||+|+.+..++.+++++|++.    |++++.++..|.||||+|+..++  
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~----GADVN~kD~~G~TPLH~Aa~~g~~~  226 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN----GVNVNLQNNHLITPLHTYLITGNVC  226 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcCCCC
Confidence            569999999999999 998877 8899999999872234567889998885    89999999999999999999995  


Q ss_pred             HHHHHHHHHcCCCCccchhhHHhhHHH----------------------------------------------------H
Q 043188          110 SDIVRVLVERAKLPQHENEELESRVGA----------------------------------------------------A  137 (197)
Q Consensus       110 ~~~~~~ll~~~~~~~~~~~~~~~~~~~----------------------------------------------------~  137 (197)
                      .+++++|++.|++++.++..+..++..                                                    .
T Consensus       227 ~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~  306 (764)
T PHA02716        227 ASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP  306 (764)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC
Confidence            489999999999988866544333321                                                    1


Q ss_pred             HHHhhccCCCCchHHHHHHh--cCCHHHHHHHhhcCCCcccccccCCCcHHHHHHh
Q 043188          138 RQMIRMTNNEKNTALHEAVC--HQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD  191 (197)
Q Consensus       138 ~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~  191 (197)
                      +.+++..|..|+||||+|+.  .++.+++++|++.|++++ .+|..|.||||+|+.
T Consensus       307 GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN-~kD~~G~TPLH~A~~  361 (764)
T PHA02716        307 GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN-EPDNIGNTVLHTYLS  361 (764)
T ss_pred             CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc-cCCCCCCCHHHHHHH
Confidence            23356678899999999764  467899999999999998 899999999999865

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=8e-24  Score=144.82  Aligned_cols=137  Identities=13%  Similarity=0.101  Sum_probs=116.7

Q ss_pred             cccCCHHHHHHHHcCCcH----HHHHHHHHHHHHhcccccCCcHHHHHHHhhhccccc---HHHHHHHHHhCCcccccCC
Q 043188           22 QSQIDPNLFKAAAAGNLE----PFKDMAREVIERLLTAKTKNTILHINIISQERENVS---TKFVAEILEKCPSLLLQVN   94 (197)
Q Consensus        22 ~~~~~~~l~~a~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~---~~~l~~~l~~~~~~~~~~~   94 (197)
                      +..+.++||.||+.|+++    .++.|++.|..++.+|..|+||||+|+  ..++.+.   +++|+..    +.+++.++
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa--~~g~~~~~~~i~~Ll~~----Gadin~~d   90 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVA--WYDRANAVMKIELLVNM----GADINARE   90 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHH--HhCccCHHHHHHHHHHc----CCCCCCCC
Confidence            345566899999999984    555667788888888889999999999  9888776   5566664    88999988


Q ss_pred             -CCCCcHHHHHHHhCCHHHHHHHHH-cCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCC
Q 043188           95 -AKGDTPLHVAAKFGHSDIVRVLVE-RAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDP  172 (197)
Q Consensus        95 -~~~~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  172 (197)
                       ..|.||||+|+..++.+++++|+. .++++..                  .+..|.||||+|+..++.+++++|++.|+
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~------------------~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  152 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQLGVNLGA------------------INYQHETAYHIAYKMRDRRMMEILRANGA  152 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccCCCccC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence             589999999999999999999995 7888765                  88999999999999999999999999999


Q ss_pred             CcccccccCCC
Q 043188          173 DYQYSANNYGK  183 (197)
Q Consensus       173 ~~~~~~~~~g~  183 (197)
                      +++ .++..|.
T Consensus       153 ~~~-~~~~~~~  162 (166)
T PHA02743        153 VCD-DPLSIGL  162 (166)
T ss_pred             CCC-CcccCCc
Confidence            988 6665553

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.92  E-value=1.8e-24  Score=177.68  Aligned_cols=106  Identities=17%  Similarity=0.140  Sum_probs=76.0

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHH------------------
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAE------------------   81 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~------------------   81 (197)
                      ..+..|.||||.|+..|+.++|++|+++|.+++..+..|.||||+|+  ..++.++++.+++                  
T Consensus       173 ~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~--~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~  250 (682)
T PHA02876        173 AKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV--DSKNIDTIKAIIDNRSNINKNDLSLLKAIRN  250 (682)
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHH--HcCCHHHHHHHHhcCCCCCCCcHHHHHHHHc
Confidence            35667899999999999999999999999988877778888888888  7777776666543                  


Q ss_pred             -------HHHhCCcccccCCCCCCcHHHHHHHhCCH-HHHHHHHHcCCCCccch
Q 043188           82 -------ILEKCPSLLLQVNAKGDTPLHVAAKFGHS-DIVRVLVERAKLPQHEN  127 (197)
Q Consensus        82 -------~l~~~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~ll~~~~~~~~~~  127 (197)
                             .+...+.+++..+..|.||||+|+..++. +++++|++.|++++..+
T Consensus       251 ~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d  304 (682)
T PHA02876        251 EDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKN  304 (682)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcC
Confidence                   12223445555566666677766666664 46666666666655443

>PHA02946 ankyin-like protein; Provisional

Probab=99.91  E-value=1.1e-23  Score=164.59  Aligned_cols=165  Identities=13%  Similarity=0.073  Sum_probs=138.0

Q ss_pred             ccCCHHHHHHHH--cCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcH
Q 043188           23 SQIDPNLFKAAA--AGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTP  100 (197)
Q Consensus        23 ~~~~~~l~~a~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~  100 (197)
                      .+..++||.++.  .++.+.++.|+++|.+++.+|..|.||||+|+  ..|+.+++++|++.    +++++.++..|.||
T Consensus        35 ~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa--~~g~~eiv~lLL~~----GAdin~~d~~g~Tp  108 (446)
T PHA02946         35 SGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIAS--KINNNRIVAMLLTH----GADPNACDKQHKTP  108 (446)
T ss_pred             CCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHH--HcCCHHHHHHHHHC----cCCCCCCCCCCCCH
Confidence            345688998774  34668999999999999999999999999999  99999999999986    89999999999999


Q ss_pred             HHHHHHhCC--HHHHHHHHHcCCCCccc-hhhHHhhH--------------HHHHHHhhccCCCCchHHHHHHhcC--CH
Q 043188          101 LHVAAKFGH--SDIVRVLVERAKLPQHE-NEELESRV--------------GAARQMIRMTNNEKNTALHEAVCHQ--NV  161 (197)
Q Consensus       101 l~~a~~~~~--~~~~~~ll~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~~~~~g~t~l~~a~~~~--~~  161 (197)
                      ||+|+..+.  .+++++|++.|++++.. +..+..++              ...+.+++..|..|+||||+|+..+  +.
T Consensus       109 Lh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~  188 (446)
T PHA02946        109 LYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKA  188 (446)
T ss_pred             HHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCH
Confidence            999987764  78999999999988742 32222222              2234566788999999999988654  46


Q ss_pred             HHHHHHhhcCCCcccccccCCCcHHHHHHhccc
Q 043188          162 DVVELLTKEDPDYQYSANNYGKTPLYMAADYRS  194 (197)
Q Consensus       162 ~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~  194 (197)
                      +++++|++.|++++ .+|..|.||||+|+..+.
T Consensus       189 ~~v~~Ll~~Gadin-~~d~~G~TpLH~Aa~~~~  220 (446)
T PHA02946        189 STISWMMKLGISPS-KPDHDGNTPLHIVCSKTV  220 (446)
T ss_pred             HHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCC
Confidence            89999999999998 999999999999998763

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=6.8e-24  Score=167.56  Aligned_cols=168  Identities=17%  Similarity=0.157  Sum_probs=99.9

Q ss_pred             cccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHH-HHhCCcccccCCCCCCcH
Q 043188           22 QSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI-LEKCPSLLLQVNAKGDTP  100 (197)
Q Consensus        22 ~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~~t~  100 (197)
                      +..+.||||.||..++.+..+.|++.|.++-..|..|..|+|.|+  +.|..++++.++.. -.+....++.-+..+.||
T Consensus       151 de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa--~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~p  228 (929)
T KOG0510|consen  151 DENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAA--RSGSKECMEIFLPEHGYERQTHINFDNNEKATP  228 (929)
T ss_pred             ccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHH--HhcchhhhhhhhccccchhhcccccccCCCCcc
Confidence            333344444444444444334444444444333444444444444  44444444444330 001123344444445555


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccccc
Q 043188          101 LHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANN  180 (197)
Q Consensus       101 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (197)
                      ||.|+..|+.++++..++.+........+   .-...+..++..|.+|.||||+|++.|+.+++..|+..|++++ .++.
T Consensus       229 LhlAve~g~~e~lk~~L~n~~~~a~~~~~---~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~-~kn~  304 (929)
T KOG0510|consen  229 LHLAVEGGDIEMLKMCLQNGKKIADVQLD---AMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASIN-SKNK  304 (929)
T ss_pred             hhhhhhcCCHHHHHHHHhCccccchhhhH---HHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccc-ccCC
Confidence            55555555555555555544433332211   1223456678899999999999999999999999999999999 9999


Q ss_pred             CCCcHHHHHHhcccC
Q 043188          181 YGKTPLYMAADYRSS  195 (197)
Q Consensus       181 ~g~tpl~~A~~~~~~  195 (197)
                      .++||||.|+++|+.
T Consensus       305 d~~spLH~AA~yg~~  319 (929)
T KOG0510|consen  305 DEESPLHFAAIYGRI  319 (929)
T ss_pred             CCCCchHHHHHcccH
Confidence            999999999999875

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=2.6e-24  Score=156.33  Aligned_cols=157  Identities=17%  Similarity=0.216  Sum_probs=133.4

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHH-HHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccC-CCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREV-IERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQV-NAKG   97 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~   97 (197)
                      ..+..|+|+||+++..+|+++|+.||+.| ++++.++..|+||++++++-.-....-+..+.+++. .+. +|.+ ...|
T Consensus       263 laDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~-mgn-VNaKAsQ~g  340 (452)
T KOG0514|consen  263 LADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFK-MGD-VNAKASQHG  340 (452)
T ss_pred             hhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHh-ccC-cchhhhhhc
Confidence            56788999999999999999999999987 778889999999999998544344444444444322 343 5554 4569


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhh-cCCCccc
Q 043188           98 DTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK-EDPDYQY  176 (197)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~  176 (197)
                      +|+|++|+..|+.++++.||..|++++.                  +|.+|.|+|.+|+.+|+.+++++|+- -++|.. 
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdVNi------------------QDdDGSTALMCA~EHGhkEivklLLA~p~cd~s-  401 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADVNI------------------QDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS-  401 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCCcc------------------ccCCccHHHhhhhhhChHHHHHHHhccCcccce-
Confidence            9999999999999999999999999876                  99999999999999999999999995 588888 


Q ss_pred             ccccCCCcHHHHHHhcccCCC
Q 043188          177 SANNYGKTPLYMAADYRSSNM  197 (197)
Q Consensus       177 ~~~~~g~tpl~~A~~~~~~~i  197 (197)
                      ..|..|-|+|.+|...|+.+|
T Consensus       402 LtD~DgSTAl~IAleagh~eI  422 (452)
T KOG0514|consen  402 LTDVDGSTALSIALEAGHREI  422 (452)
T ss_pred             eecCCCchhhhhHHhcCchHH
Confidence            999999999999999998765

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.4e-23  Score=170.00  Aligned_cols=168  Identities=14%  Similarity=0.000  Sum_probs=119.9

Q ss_pred             ccccCCHHHHHHHHc---CCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccH----HHHH-------------
Q 043188           21 SQSQIDPNLFKAAAA---GNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVST----KFVA-------------   80 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~----~~l~-------------   80 (197)
                      .+..|.||||+|+..   |+.+.++.|++.|.+++..+..|.||||+|+  ..|+.++.    +.|+             
T Consensus        28 ~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa--~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~  105 (661)
T PHA02917         28 RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYT--NSRHVKVNKDIAMALLEATGYSNINDFNI  105 (661)
T ss_pred             cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHH--HcCChhHHHHHHHHHHhccCCCCCCCcch
Confidence            366789999997555   8899999999999999988999999999999  76664432    2222             


Q ss_pred             --------------HHHHhCCcccccCCCCCCcHHHHH--HHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhcc
Q 043188           81 --------------EILEKCPSLLLQVNAKGDTPLHVA--AKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMT  144 (197)
Q Consensus        81 --------------~~l~~~~~~~~~~~~~~~t~l~~a--~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                                    ++|.+.|++++.++..|.||||.+  +.+++.+++++|+++|+++...+.......    ...+..
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~----~~~~~~  181 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGY----AYDDYQ  181 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccc----cccccc
Confidence                          112334677777777777887744  345677788888877777653110000000    000111


Q ss_pred             CCCCchHHHHHHh-----------cCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccC
Q 043188          145 NNEKNTALHEAVC-----------HQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       145 ~~~g~t~l~~a~~-----------~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                      ...+.||||+|+.           .++.+++++|++.|++++ .+|..|.||||+|+..|+.
T Consensus       182 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn-~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        182 PRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPS-SIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             ccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcc-cCCCCCCcHHHHHHHcCCC
Confidence            2234699999975           458899999999999998 9999999999999999875

>PHA02798 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.4e-23  Score=166.41  Aligned_cols=152  Identities=17%  Similarity=0.159  Sum_probs=109.2

Q ss_pred             ccccCCHHHHHHHHc-----CCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhc---ccccHHHHHHHHHhCCccccc
Q 043188           21 SQSQIDPNLFKAAAA-----GNLEPFKDMAREVIERLLTAKTKNTILHINIISQER---ENVSTKFVAEILEKCPSLLLQ   92 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~-----g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~---~~~~~~~l~~~l~~~~~~~~~   92 (197)
                      .+..|.||||.|+..     +..++++.|+++|++++.++..|.||||+|+  ..+   +.+++++|++.    |++++.
T Consensus        67 ~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~--~~~~~~~~~iv~~Ll~~----Gadvn~  140 (489)
T PHA02798         67 LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLL--SNGYINNLEILLFMIEN----GADTTL  140 (489)
T ss_pred             CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHH--HcCCcChHHHHHHHHHc----CCCccc
Confidence            446777888877653     5678888888888888877778888888888  554   45666666664    777888


Q ss_pred             CCCCCCcHHHHHHHhCC---HHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhc----CCHHHHH
Q 043188           93 VNAKGDTPLHVAAKFGH---SDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCH----QNVDVVE  165 (197)
Q Consensus        93 ~~~~~~t~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~----~~~~~~~  165 (197)
                      ++..|.||||+|+..++   .+++++|++.|+++...                 .+..|.||||.++..    ++.++++
T Consensus       141 ~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~-----------------~~~~~~t~Lh~~~~~~~~~~~~~ivk  203 (489)
T PHA02798        141 LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTH-----------------NNKEKYDTLHCYFKYNIDRIDADILK  203 (489)
T ss_pred             cCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccc-----------------cCcCCCcHHHHHHHhccccCCHHHHH
Confidence            88888888888888776   77888888888776541                 234566677666543    3566666


Q ss_pred             HHhhcCCC---------------------------------------cccccccCCCcHHHHHHhcccCC
Q 043188          166 LLTKEDPD---------------------------------------YQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       166 ~Ll~~g~~---------------------------------------~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      +|++.|++                                       ++ .+|..|.||||+|+.+|+.+
T Consensus       204 ~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN-~~d~~G~TPL~~A~~~~~~~  272 (489)
T PHA02798        204 LFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDIN-QVDELGFNPLYYSVSHNNRK  272 (489)
T ss_pred             HHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCC-CcCcCCccHHHHHHHcCcHH
Confidence            66666554                                       33 56778999999999988653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=2.8e-23  Score=173.27  Aligned_cols=147  Identities=20%  Similarity=0.183  Sum_probs=132.5

Q ss_pred             ccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           19 EISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        19 ~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ...+..|.||||.|+..|+.++++.|+++|++++.+|..|.||||+|+  ..|+.+++++|+..    +...+  ...+.
T Consensus       552 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~--~~g~~~iv~~L~~~----~~~~~--~~~~~  623 (823)
T PLN03192        552 DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI--SAKHHKIFRILYHF----ASISD--PHAAG  623 (823)
T ss_pred             CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHH--HhCCHHHHHHHHhc----CcccC--cccCc
Confidence            456778999999999999999999999999999999999999999999  99999999999874    44332  34577


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccc
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSA  178 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  178 (197)
                      ++||.|+..++.+++++|+++|++++.                  .|..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus       624 ~~L~~Aa~~g~~~~v~~Ll~~Gadin~------------------~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~-~~  684 (823)
T PLN03192        624 DLLCTAAKRNDLTAMKELLKQGLNVDS------------------EDHQGATALQVAMAEDHVDMVRLLIMNGADVD-KA  684 (823)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC-CC
Confidence            999999999999999999999999876                  89999999999999999999999999999998 77


Q ss_pred             ccCC-CcHHHHHHhc
Q 043188          179 NNYG-KTPLYMAADY  192 (197)
Q Consensus       179 ~~~g-~tpl~~A~~~  192 (197)
                      +..| .||..++...
T Consensus       685 ~~~g~~t~~~l~~~~  699 (823)
T PLN03192        685 NTDDDFSPTELRELL  699 (823)
T ss_pred             CCCCCCCHHHHHHHH
Confidence            8877 9999887543

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=1.4e-22  Score=139.30  Aligned_cols=134  Identities=16%  Similarity=0.175  Sum_probs=112.6

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHH------HHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAR------EVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQV   93 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~   93 (197)
                      ..+..+.++||.|+..|+.++++.|+.      .|.+++.+|..|.||||+|+  ..++.+++.-+++++...+.+++.+
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~--~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAA--EKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHH--HcCChHHHHHHHHHHHHcCCCCCCC
Confidence            456789999999999999999999864      35777888999999999999  9888543333333333348889988


Q ss_pred             CC-CCCcHHHHHHHhCCHHHHHHHHH-cCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcC
Q 043188           94 NA-KGDTPLHVAAKFGHSDIVRVLVE-RAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKED  171 (197)
Q Consensus        94 ~~-~~~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  171 (197)
                      +. .|.||||+|+..++.+++++|+. .+.++..                  .+..|.||||+|+..++.+++++|++.+
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~------------------~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF------------------CNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc------------------CCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            85 89999999999999999999997 5887765                  8899999999999999999999999875


Q ss_pred             CC
Q 043188          172 PD  173 (197)
Q Consensus       172 ~~  173 (197)
                      +.
T Consensus       156 ~~  157 (169)
T PHA02741        156 AT  157 (169)
T ss_pred             HH
Confidence            44

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=3.7e-24  Score=160.23  Aligned_cols=152  Identities=20%  Similarity=0.192  Sum_probs=135.7

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHH-HHHHh--------cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccc
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMARE-VIERL--------LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLL   91 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~-g~~~~--------~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~   91 (197)
                      ....|.|||..|+++|+.++|++|+++ +.++.        -....|-+||-.|+  ..|+.++++.|+..    ++.+|
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAs--aAGHl~vVk~L~~~----ga~VN  111 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAAS--AAGHLEVVKLLLRR----GASVN  111 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHh--ccCcHHHHHHHHHh----cCccc
Confidence            345667899999999999999999994 23222        12367889988888  99999999999997    79999


Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcC
Q 043188           92 QVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKED  171 (197)
Q Consensus        92 ~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  171 (197)
                      .......|||-.||..|+.+++++|+++++++..                  .+..|.|+|++|+..|+.+++++|++.|
T Consensus       112 ~tT~TNStPLraACfDG~leivKyLvE~gad~~I------------------anrhGhTcLmIa~ykGh~~I~qyLle~g  173 (615)
T KOG0508|consen  112 DTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEI------------------ANRHGHTCLMIACYKGHVDIAQYLLEQG  173 (615)
T ss_pred             cccccCCccHHHHHhcchhHHHHHHHHcCCCCcc------------------cccCCCeeEEeeeccCchHHHHHHHHhC
Confidence            9888888999999999999999999999999876                  9999999999999999999999999999


Q ss_pred             CCcccccccCCCcHHHHHHhcccCCC
Q 043188          172 PDYQYSANNYGKTPLYMAADYRSSNM  197 (197)
Q Consensus       172 ~~~~~~~~~~g~tpl~~A~~~~~~~i  197 (197)
                      +|++ .++..|+|+||.|++.|+.||
T Consensus       174 ADvn-~ks~kGNTALH~caEsG~vdi  198 (615)
T KOG0508|consen  174 ADVN-AKSYKGNTALHDCAESGSVDI  198 (615)
T ss_pred             CCcc-hhcccCchHHHhhhhcccHHH
Confidence            9999 999999999999999998653

>PHA03095 ankyrin-like protein; Provisional

Probab=99.90  E-value=3e-23  Score=164.15  Aligned_cols=149  Identities=14%  Similarity=0.065  Sum_probs=134.8

Q ss_pred             cccccCCHHHHHHHHcC---CcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhc-ccccHHHHHHHHHhCCcccccCCC
Q 043188           20 ISQSQIDPNLFKAAAAG---NLEPFKDMAREVIERLLTAKTKNTILHINIISQER-ENVSTKFVAEILEKCPSLLLQVNA   95 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~   95 (197)
                      ..+..|.||||.|+..|   +.++++.|++.|.+++.++..|.||||+|+  ..+ ..+++++|++.    +++++.++.
T Consensus        42 ~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~--~~~~~~~iv~lLl~~----ga~in~~~~  115 (471)
T PHA03095         42 FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYL--YNATTLDVIKLLIKA----GADVNAKDK  115 (471)
T ss_pred             cCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCCcHHHHHHHHHc----CCCCCCCCC
Confidence            45677899999999999   999999999999999988889999999999  999 58999999886    899999999


Q ss_pred             CCCcHHHHHH--HhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcC--CHHHHHHHhhcC
Q 043188           96 KGDTPLHVAA--KFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQ--NVDVVELLTKED  171 (197)
Q Consensus        96 ~~~t~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~g  171 (197)
                      .|.||||+|+  ..++.+++++|++.|+++..                  .+..|.||||+|+..+  +.+++++|++.|
T Consensus       116 ~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~------------------~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g  177 (471)
T PHA03095        116 VGRTPLHVYLSGFNINPKVIRLLLRKGADVNA------------------LDLYGMTPLAVLLKSRNANVELLRLLIDAG  177 (471)
T ss_pred             CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCc------------------cCCCCCCHHHHHHHcCCCCHHHHHHHHHcC
Confidence            9999999999  55678999999999999876                  8999999999998765  689999999999


Q ss_pred             CCcccccccCCCcHHHHHHhcc
Q 043188          172 PDYQYSANNYGKTPLYMAADYR  193 (197)
Q Consensus       172 ~~~~~~~~~~g~tpl~~A~~~~  193 (197)
                      +++. ..+..|.||||+|+...
T Consensus       178 ~~~~-~~d~~g~t~Lh~~~~~~  198 (471)
T PHA03095        178 ADVY-AVDDRFRSLLHHHLQSF  198 (471)
T ss_pred             CCCc-ccCCCCCCHHHHHHHHC
Confidence            9998 66999999999998753

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.89  E-value=3e-23  Score=171.69  Aligned_cols=153  Identities=27%  Similarity=0.279  Sum_probs=124.6

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ...++|-|+||.|+..|+.+.++.+++.+...+.....+.+++|.+.  ..+...+.+.+++.    +...+.++..+.|
T Consensus       469 ~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~--~~~~v~~~~~l~~~----ga~v~~~~~r~~T  542 (1143)
T KOG4177|consen  469 AVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAA--DEDTVKVAKILLEH----GANVDLRTGRGYT  542 (1143)
T ss_pred             hhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhh--hhhhHHHHHHHhhc----CCceehhcccccc
Confidence            34455566666666666666666666665544455556666666666  66666666666554    7888888899999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccc
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSAN  179 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  179 (197)
                      |||.|+.+|+.++|++|+++|+++..                  .+..|+||||.|+..|+.+++.+|+++|++++ ..+
T Consensus       543 pLh~A~~~g~v~~VkfLLe~gAdv~a------------------k~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vn-a~d  603 (1143)
T KOG4177|consen  543 PLHVAVHYGNVDLVKFLLEHGADVNA------------------KDKLGYTPLHQAAQQGHNDIAELLLKHGASVN-AAD  603 (1143)
T ss_pred             hHHHHHhcCCchHHHHhhhCCccccc------------------cCCCCCChhhHHHHcChHHHHHHHHHcCCCCC-ccc
Confidence            99999999999999999999999887                  88999999999999999999999999999999 999


Q ss_pred             cCCCcHHHHHHhcccCCC
Q 043188          180 NYGKTPLYMAADYRSSNM  197 (197)
Q Consensus       180 ~~g~tpl~~A~~~~~~~i  197 (197)
                      .+|.|||++|++.|+.++
T Consensus       604 ~~g~TpL~iA~~lg~~~~  621 (1143)
T KOG4177|consen  604 LDGFTPLHIAVRLGYLSV  621 (1143)
T ss_pred             ccCcchhHHHHHhcccch
Confidence            999999999999998763

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.89  E-value=6.3e-23  Score=162.93  Aligned_cols=165  Identities=13%  Similarity=0.078  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHc--CCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhc------ccccHHHHHHHHHhCCcccccCCCC
Q 043188           25 IDPNLFKAAAA--GNLEPFKDMAREVIERLLTAKTKNTILHINIISQER------ENVSTKFVAEILEKCPSLLLQVNAK   96 (197)
Q Consensus        25 ~~~~l~~a~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~------~~~~~~~l~~~l~~~~~~~~~~~~~   96 (197)
                      +.++|+.++..  ++.++|+.|++.|++++.++ .+.||||.|+  ..+      ..+++++|++.    |++++.++..
T Consensus        35 g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~--~~~~~~~~~~~~iv~~Ll~~----Gadin~~d~~  107 (494)
T PHA02989         35 GNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVL--RNREITSNKIKKIVKLLLKF----GADINLKTFN  107 (494)
T ss_pred             CCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHH--hccCcchhhHHHHHHHHHHC----CCCCCCCCCC
Confidence            44444443332  24556666666666665544 3456666555  322      23444444443    5556666666


Q ss_pred             CCcHHHHHHHh---CCHHHHHHHHHcCCCC-ccchhhHHhhHHHH-----------------HHHhhc-cCCCCchHHHH
Q 043188           97 GDTPLHVAAKF---GHSDIVRVLVERAKLP-QHENEELESRVGAA-----------------RQMIRM-TNNEKNTALHE  154 (197)
Q Consensus        97 ~~t~l~~a~~~---~~~~~~~~ll~~~~~~-~~~~~~~~~~~~~~-----------------~~~~~~-~~~~g~t~l~~  154 (197)
                      |.||||.|+..   ++.+++++|+++|+++ ...+..+.+++..+                 +.+++. .+..|.||||+
T Consensus       108 g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~  187 (494)
T PHA02989        108 GVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNI  187 (494)
T ss_pred             CCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHH
Confidence            66666655443   3455666666666655 33332222222211                 111222 34567777777


Q ss_pred             HHhcC----CHHHHHHHhhcCCCcc-------------------------------------cccccCCCcHHHHHHhcc
Q 043188          155 AVCHQ----NVDVVELLTKEDPDYQ-------------------------------------YSANNYGKTPLYMAADYR  193 (197)
Q Consensus       155 a~~~~----~~~~~~~Ll~~g~~~~-------------------------------------~~~~~~g~tpl~~A~~~~  193 (197)
                      |++.+    +.+++++|++.|++++                                     +.+|..|.||||+|+..|
T Consensus       188 a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~  267 (494)
T PHA02989        188 YLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVD  267 (494)
T ss_pred             HHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhc
Confidence            65543    6677777777766543                                     144566888888888877


Q ss_pred             cCC
Q 043188          194 SSN  196 (197)
Q Consensus       194 ~~~  196 (197)
                      +.+
T Consensus       268 ~~~  270 (494)
T PHA02989        268 NYE  270 (494)
T ss_pred             CHH
Confidence            643

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=1.9e-22  Score=138.59  Aligned_cols=123  Identities=20%  Similarity=0.179  Sum_probs=107.9

Q ss_pred             cccccCCcHHHHHHHhhhcccccHHHHHHHHH--hCCcccccCCCCCCcHHHHHHHhCC----HHHHHHHHHcCCCCccc
Q 043188           53 LTAKTKNTILHINIISQERENVSTKFVAEILE--KCPSLLLQVNAKGDTPLHVAAKFGH----SDIVRVLVERAKLPQHE  126 (197)
Q Consensus        53 ~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~--~~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~ll~~~~~~~~~  126 (197)
                      .++..|.||||+|+  +.|+.++++.++.+..  ..+..++.++..|.||||+|+..++    .+++++|+..|++++. 
T Consensus        16 ~~~~~g~t~Lh~Aa--~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~-   92 (169)
T PHA02741         16 EKNSEGENFFHEAA--RCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA-   92 (169)
T ss_pred             ccccCCCCHHHHHH--HcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-
Confidence            57789999999999  9999999998876431  2256788899999999999999998    4789999999998776 


Q ss_pred             hhhHHhhHHHHHHHhhccCC-CCchHHHHHHhcCCHHHHHHHhh-cCCCcccccccCCCcHHHHHHhcccCC
Q 043188          127 NEELESRVGAARQMIRMTNN-EKNTALHEAVCHQNVDVVELLTK-EDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                                       .+. .|.||||+|+..++.+++++|++ .|++++ .+|..|.|||++|...++.+
T Consensus        93 -----------------~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~-~~n~~g~tpL~~A~~~~~~~  146 (169)
T PHA02741         93 -----------------QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH-FCNADNKSPFELAIDNEDVA  146 (169)
T ss_pred             -----------------CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCCHHHHHHHCCCHH
Confidence                             664 89999999999999999999997 599988 99999999999999988743

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=4.3e-22  Score=136.27  Aligned_cols=129  Identities=16%  Similarity=0.154  Sum_probs=109.9

Q ss_pred             HHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHH---HHHHHHcCCCC
Q 043188           47 EVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDI---VRVLVERAKLP  123 (197)
Q Consensus        47 ~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~---~~~ll~~~~~~  123 (197)
                      +|.++...+..+.++||+||  +.|+.+.+..+++.+...+..++.++..|.||||+|+..++.+.   +++|+..|+++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~--~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRIC--RTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             cchHHhhhccCCCcHHHHHH--HcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            56777777778899999999  99988666555554445578888889999999999999988654   89999999987


Q ss_pred             ccchhhHHhhHHHHHHHhhccC-CCCchHHHHHHhcCCHHHHHHHhh-cCCCcccccccCCCcHHHHHHhcccCC
Q 043188          124 QHENEELESRVGAARQMIRMTN-NEKNTALHEAVCHQNVDVVELLTK-EDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      +.                  .+ ..|.||||+|+..++.+++++|++ .|+++. .++..|.||||+|+..++.+
T Consensus        87 n~------------------~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~-~~d~~g~tpL~~A~~~~~~~  142 (166)
T PHA02743         87 NA------------------RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG-AINYQHETAYHIAYKMRDRR  142 (166)
T ss_pred             CC------------------CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc-CcCCCCCCHHHHHHHcCCHH
Confidence            76                  76 589999999999999999999995 899998 89999999999999887653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=9.3e-22  Score=144.76  Aligned_cols=139  Identities=13%  Similarity=0.097  Sum_probs=118.5

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcc----cccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccC-CC
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLT----AKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQV-NA   95 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~----~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~   95 (197)
                      ...+..++|+.|+..|+.++++.|+++|++++.+    +..|.||||+|+  ..++.+++++|++.    |++++.+ +.
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa--~~~~~eivklLL~~----GADVN~~~~~  102 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAI--DCDNDDAAKLLIRY----GADVNRYAEE  102 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCcCcccCC
Confidence            4556788999999999999999999999999865    468999999999  99999999999986    9999986 45


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcc
Q 043188           96 KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQ  175 (197)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  175 (197)
                      .|.||||+|+..++.+++++|+..|+++..                  .+..|.||||+|+..++..++..+...     
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAdin~------------------kd~~G~TpL~~A~~~~~~~~~~~~~~~-----  159 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGADINI------------------QTNDMVTPIELALMICNNFLAFMICDN-----  159 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHhCChhHHHHhcCC-----
Confidence            799999999999999999999999999876                  889999999999998888876555422     


Q ss_pred             cccccCCCcHHHHH
Q 043188          176 YSANNYGKTPLYMA  189 (197)
Q Consensus       176 ~~~~~~g~tpl~~A  189 (197)
                       ..+..+.+|.+++
T Consensus       160 -~~~~~~~~~~~~~  172 (300)
T PHA02884        160 -EISNFYKHPKKIL  172 (300)
T ss_pred             -cccccccChhhhh
Confidence             2345566777654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=8.4e-22  Score=129.76  Aligned_cols=142  Identities=20%  Similarity=0.114  Sum_probs=126.3

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHHH-hcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHH
Q 043188           28 NLFKAAAAGNLEPFKDMAREVIER-LLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAK  106 (197)
Q Consensus        28 ~l~~a~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~  106 (197)
                      .+.+|+..+.+..|+.||+..++. +.+|.+|.||||-|+  +.|+.++++.|+..    +++.+.+...|+||||.||.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAa--Yn~h~div~~ll~~----gAn~~a~T~~GWTPLhSAck  139 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAA--YNGHLDIVHELLLS----GANKEAKTNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHH--hcCchHHHHHHHHc----cCCcccccccCccchhhhhc
Confidence            488999999999999999987654 489999999999999  99999999998886    99999999999999999999


Q ss_pred             hCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHH-HHHHHh-hcCCCcccccccCCCc
Q 043188          107 FGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVD-VVELLT-KEDPDYQYSANNYGKT  184 (197)
Q Consensus       107 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~-~~~~Ll-~~g~~~~~~~~~~g~t  184 (197)
                      -++.+|+-.|+.+|+++++                  ......||||+|+...+.. .+.+|+ ..+.++. .++..+.|
T Consensus       140 WnN~~va~~LLqhgaDVnA------------------~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg-~~nn~eet  200 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGADVNA------------------QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG-LKNNLEET  200 (228)
T ss_pred             ccchhHHHHHHhccCcccc------------------cccccchhhHHhhcccchHHHHHHHhhccccChh-hhcCccch
Confidence            9999999999999999887                  7888999999999877765 566665 5677777 88889999


Q ss_pred             HHHHHHhccc
Q 043188          185 PLYMAADYRS  194 (197)
Q Consensus       185 pl~~A~~~~~  194 (197)
                      |+.+|.+-+.
T Consensus       201 a~~iARRT~~  210 (228)
T KOG0512|consen  201 AFDIARRTSM  210 (228)
T ss_pred             HHHHHHHhhh
Confidence            9999988753

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.9e-21  Score=131.82  Aligned_cols=129  Identities=15%  Similarity=0.119  Sum_probs=104.4

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHH-------HHhcccccCCcHHHHHHHhhhcccc---cHHHHHHHHHhCCccc
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVI-------ERLLTAKTKNTILHINIISQERENV---STKFVAEILEKCPSLL   90 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~-------~~~~~~~~g~t~lh~a~~~~~~~~~---~~~~l~~~l~~~~~~~   90 (197)
                      .+..|.||||+|+..|++.  ..+...+.       .....+..|.||||+|+  ..++.+   ++++|++.    +.++
T Consensus        13 ~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~--~~~~~~~~e~v~~Ll~~----gadi   84 (154)
T PHA02736         13 PDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVS--NPDKADPQEKLKLLMEW----GADI   84 (154)
T ss_pred             cCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeec--ccCchhHHHHHHHHHHc----CCCc
Confidence            3456899999999999842  33322222       22346789999999999  888765   45555554    8889


Q ss_pred             ccCC-CCCCcHHHHHHHhCCHHHHHHHHHc-CCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHh
Q 043188           91 LQVN-AKGDTPLHVAAKFGHSDIVRVLVER-AKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLT  168 (197)
Q Consensus        91 ~~~~-~~~~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  168 (197)
                      +.++ ..|.||||+|+..++.+++++|+.. +.++..                  .+..|.||||+|+..++.+++++|+
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~------------------~~~~g~tpL~~A~~~~~~~i~~~Ll  146 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEI------------------LNYAFKTPYYVACERHDAKMMNILR  146 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcc------------------ccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9988 4899999999999999999999974 777665                  8999999999999999999999999


Q ss_pred             hcCCCcc
Q 043188          169 KEDPDYQ  175 (197)
Q Consensus       169 ~~g~~~~  175 (197)
                      +.|++..
T Consensus       147 ~~ga~~~  153 (154)
T PHA02736        147 AKGAQCK  153 (154)
T ss_pred             HcCCCCC
Confidence            9998754

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.85  E-value=1.6e-21  Score=133.14  Aligned_cols=142  Identities=17%  Similarity=0.064  Sum_probs=115.0

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHH
Q 043188           26 DPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAA  105 (197)
Q Consensus        26 ~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~  105 (197)
                      -+++.+++.+-+++.+..+..  ..++.+|+.|.|||.||+  .+|+.+.+++|++.    |+++....+...++|.+|+
T Consensus       130 ~s~~slsVhql~L~~~~~~~~--n~VN~~De~GfTpLiWAa--a~G~i~vV~fLL~~----GAdp~~lgk~resALsLAt  201 (296)
T KOG0502|consen  130 WSPLSLSVHQLHLDVVDLLVN--NKVNACDEFGFTPLIWAA--AKGHIPVVQFLLNS----GADPDALGKYRESALSLAT  201 (296)
T ss_pred             CChhhHHHHHHHHHHHHHHhh--ccccCccccCchHhHHHH--hcCchHHHHHHHHc----CCChhhhhhhhhhhHhHHh
Confidence            345666666665555444333  224567888888888888  88888888888875    8888887778888888888


Q ss_pred             HhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcH
Q 043188          106 KFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTP  185 (197)
Q Consensus       106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tp  185 (197)
                      +.|..++|++|+.++.+++.                  -|.+|-|||-+|++.++.+|++-|+..|+++. ..+..|.++
T Consensus       202 ~ggytdiV~lLL~r~vdVNv------------------yDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t-~e~dsGy~~  262 (296)
T KOG0502|consen  202 RGGYTDIVELLLTREVDVNV------------------YDWNGGTPLLYAVRGNHVKCVESLLNSGADVT-QEDDSGYWI  262 (296)
T ss_pred             cCChHHHHHHHHhcCCCcce------------------eccCCCceeeeeecCChHHHHHHHHhcCCCcc-cccccCCcH
Confidence            88888888888888887665                  89999999999999999999999999999998 899999999


Q ss_pred             HHHHHhccc
Q 043188          186 LYMAADYRS  194 (197)
Q Consensus       186 l~~A~~~~~  194 (197)
                      ++.|+..|+
T Consensus       263 mdlAValGy  271 (296)
T KOG0502|consen  263 MDLAVALGY  271 (296)
T ss_pred             HHHHHHhhh
Confidence            999998886

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.85  E-value=6.4e-22  Score=135.04  Aligned_cols=149  Identities=15%  Similarity=0.100  Sum_probs=131.6

Q ss_pred             cCCCCcccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCccccc
Q 043188           13 LLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQ   92 (197)
Q Consensus        13 ~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~   92 (197)
                      ..++.-...+++|-|||.||+.+|++.+|++||..|.+++...+...++|.+|+  +.|-.+++++|+.    +..++|.
T Consensus       148 ~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt--~ggytdiV~lLL~----r~vdVNv  221 (296)
T KOG0502|consen  148 LVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLAT--RGGYTDIVELLLT----REVDVNV  221 (296)
T ss_pred             HhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHh--cCChHHHHHHHHh----cCCCcce
Confidence            345555578899999999999999999999999999999988889999999999  9999999999988    4899999


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCC
Q 043188           93 VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDP  172 (197)
Q Consensus        93 ~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  172 (197)
                      .|++|.|||-+|++.++.+|++.|+..|+++..                  .+..|.+++..|+..|+- +++..++..+
T Consensus       222 yDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~------------------e~dsGy~~mdlAValGyr-~Vqqvie~h~  282 (296)
T KOG0502|consen  222 YDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQ------------------EDDSGYWIMDLAVALGYR-IVQQVIEKHA  282 (296)
T ss_pred             eccCCCceeeeeecCChHHHHHHHHhcCCCccc------------------ccccCCcHHHHHHHhhhH-HHHHHHHHHH
Confidence            999999999999999999999999999999876                  889999999999999988 7777777666


Q ss_pred             CcccccccCCCcHHH
Q 043188          173 DYQYSANNYGKTPLY  187 (197)
Q Consensus       173 ~~~~~~~~~g~tpl~  187 (197)
                      ... ..|....||+|
T Consensus       283 lkl-~Q~~~~~~~~~  296 (296)
T KOG0502|consen  283 LKL-CQDSEKRTPLH  296 (296)
T ss_pred             HHH-hhcccCCCCCC
Confidence            555 56666666653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=2.6e-20  Score=137.17  Aligned_cols=118  Identities=17%  Similarity=0.077  Sum_probs=103.2

Q ss_pred             cccccCCcH-HHHHHHhhhcccccHHHHHHHHHhCCcccccCC----CCCCcHHHHHHHhCCHHHHHHHHHcCCCCccch
Q 043188           53 LTAKTKNTI-LHINIISQERENVSTKFVAEILEKCPSLLLQVN----AKGDTPLHVAAKFGHSDIVRVLVERAKLPQHEN  127 (197)
Q Consensus        53 ~~~~~g~t~-lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~  127 (197)
                      .+|..|.|+ ||+|+  ..++.+++++|++.    |++++.++    ..|.||||+|+..++.+++++|+++|++++.  
T Consensus        27 ~~d~~~~~~lL~~A~--~~~~~eivk~LL~~----GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~--   98 (300)
T PHA02884         27 KKNKICIANILYSSI--KFHYTDIIDAILKL----GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNR--   98 (300)
T ss_pred             ccCcCCCCHHHHHHH--HcCCHHHHHHHHHC----CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCc--
Confidence            456666665 66666  77899999999997    88898874    5899999999999999999999999999875  


Q ss_pred             hhHHhhHHHHHHHhhcc-CCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccC
Q 043188          128 EELESRVGAARQMIRMT-NNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                                      . +..|.||||.|+..++.+++++|++.|++++ .++..|.|||++|+..++.
T Consensus        99 ----------------~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin-~kd~~G~TpL~~A~~~~~~  150 (300)
T PHA02884         99 ----------------YAEEAKITPLYISVLHGCLKCLEILLSYGADIN-IQTNDMVTPIELALMICNN  150 (300)
T ss_pred             ----------------ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHhCCh
Confidence                            4 4579999999999999999999999999999 8999999999999986643

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=3.4e-21  Score=130.54  Aligned_cols=122  Identities=23%  Similarity=0.257  Sum_probs=97.4

Q ss_pred             hcccccCCcHHHHHHHhhhcccccHHHHHHH--H-HhCCcccccCCCCCCcHHHHHHHhCCHH---HHHHHHHcCCCCcc
Q 043188           52 LLTAKTKNTILHINIISQERENVSTKFVAEI--L-EKCPSLLLQVNAKGDTPLHVAAKFGHSD---IVRVLVERAKLPQH  125 (197)
Q Consensus        52 ~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~--l-~~~~~~~~~~~~~~~t~l~~a~~~~~~~---~~~~ll~~~~~~~~  125 (197)
                      ..+|..|.||||+|+  +.|+.  ..++...  . ...+..+..++..|.||||+|+..++.+   ++++|++.|+++..
T Consensus        11 ~~~d~~g~tpLh~A~--~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~   86 (154)
T PHA02736         11 SEPDIEGENILHYLC--RNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADING   86 (154)
T ss_pred             HhcCCCCCCHHHHHH--HhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccc
Confidence            357789999999999  88873  2322221  0 0112234456889999999999999864   68899999998776


Q ss_pred             chhhHHhhHHHHHHHhhccC-CCCchHHHHHHhcCCHHHHHHHhh-cCCCcccccccCCCcHHHHHHhcccCC
Q 043188          126 ENEELESRVGAARQMIRMTN-NEKNTALHEAVCHQNVDVVELLTK-EDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                                        .+ ..|.||||+|+..++.+++++|++ .|++++ .++..|.||||+|+..|+.+
T Consensus        87 ------------------~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n-~~~~~g~tpL~~A~~~~~~~  140 (154)
T PHA02736         87 ------------------KERVFGNTPLHIAVYTQNYELATWLCNQPGVNME-ILNYAFKTPYYVACERHDAK  140 (154)
T ss_pred             ------------------cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-cccCCCCCHHHHHHHcCCHH
Confidence                              66 589999999999999999999997 599988 99999999999999988654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.84  E-value=1.3e-20  Score=144.11  Aligned_cols=146  Identities=17%  Similarity=0.089  Sum_probs=122.7

Q ss_pred             hhhhhhccCCCCccc-ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHh-cc-----cccCCcHHHHHHHhhhcccccHHH
Q 043188            6 NEIEEASLLDNNGEI-SQSQIDPNLFKAAAAGNLEPFKDMAREVIERL-LT-----AKTKNTILHINIISQERENVSTKF   78 (197)
Q Consensus         6 n~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~-~~-----~~~g~t~lh~a~~~~~~~~~~~~~   78 (197)
                      |..+...++-.+|.. ....+.|+||.|+..|+.+++++|+++|++.. ..     +..+.+++|.|.  ..+..+++++
T Consensus       129 n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~--~~~~~eIve~  206 (437)
T PHA02795        129 VEIDIVDFMVDHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVD--EPTVLEIYKL  206 (437)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHH--hcCHHHHHHH
Confidence            344444444444443 33355789999999999999999999997433 21     235789999999  9999999999


Q ss_pred             HHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhc
Q 043188           79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCH  158 (197)
Q Consensus        79 l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~  158 (197)
                      |+.+    +++++.++..|.||||+|+..++.+++++|++.|++++.                  .+..|.||||+|+..
T Consensus       207 LIs~----GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~------------------~d~~G~TpLh~Aa~~  264 (437)
T PHA02795        207 CIPY----IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNA------------------VMSNGYTCLDVAVDR  264 (437)
T ss_pred             HHhC----cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------------------cCCCCCCHHHHHHHc
Confidence            9986    899999999999999999999999999999999999887                  899999999999998


Q ss_pred             CC--------HHHHHHHhhcCCCcc
Q 043188          159 QN--------VDVVELLTKEDPDYQ  175 (197)
Q Consensus       159 ~~--------~~~~~~Ll~~g~~~~  175 (197)
                      |+        .+++++|+++|+++.
T Consensus       265 g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        265 GSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             CCcccccccHHHHHHHHHhCCCCCC
Confidence            84        689999999999876

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=6.2e-21  Score=144.87  Aligned_cols=153  Identities=22%  Similarity=0.214  Sum_probs=132.6

Q ss_pred             cccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHH---------------
Q 043188           18 GEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI---------------   82 (197)
Q Consensus        18 ~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~---------------   82 (197)
                      +...+.+|.|+||.+|...+.++|++|++.|.+++..|..++||||.|+  ..|+..++++++.+               
T Consensus        66 ~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaa--scg~~~i~~~li~~gA~~~avNsdg~~P~  143 (527)
T KOG0505|consen   66 PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAA--SCGYLNIVEYLIQHGANLLAVNSDGNMPY  143 (527)
T ss_pred             ccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhc--ccccHHHHHHHHHhhhhhhhccCCCCCcc
Confidence            3567889999999999999999999999999999999999999999999  99999999999887               


Q ss_pred             ----------------------------------------HHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC
Q 043188           83 ----------------------------------------LEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKL  122 (197)
Q Consensus        83 ----------------------------------------l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~  122 (197)
                                                              +...+...+.+...|.|.||.|+.+|..++.++|+..|.+
T Consensus       144 dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~  223 (527)
T KOG0505|consen  144 DLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS  223 (527)
T ss_pred             ccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC
Confidence                                                    1112233444444688999999999999999999999988


Q ss_pred             CccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHh
Q 043188          123 PQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD  191 (197)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~  191 (197)
                      +..                  .|.+|+||||.|+.=|..+++++|+++|++.. .+...|.||+..|..
T Consensus       224 ~~~------------------~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d-~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  224 VNI------------------KDYDGWTPLHAAAHWGQEDACELLVEHGADMD-AKTKMGETPLDVADE  273 (527)
T ss_pred             ccc------------------ccccCCCcccHHHHhhhHhHHHHHHHhhcccc-hhhhcCCCCccchhh
Confidence            776                  89999999999999999999999999999988 888899999988754

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.83  E-value=1.5e-20  Score=156.01  Aligned_cols=149  Identities=24%  Similarity=0.217  Sum_probs=139.4

Q ss_pred             ccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           19 EISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        19 ~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ......+-+++|.|...+....++.++++|.+++.++..|.||||.||  .+|+...+++|++.    +++.+.++..|+
T Consensus       501 ~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~--~~g~v~~VkfLLe~----gAdv~ak~~~G~  574 (1143)
T KOG4177|consen  501 NLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAV--HYGNVDLVKFLLEH----GADVNAKDKLGY  574 (1143)
T ss_pred             CccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHH--hcCCchHHHHhhhC----CccccccCCCCC
Confidence            345667889999999999999999999999999999999999999999  99999999999997    999999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCC-----
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPD-----  173 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-----  173 (197)
                      ||||.|+..|+.+|+++|+++|++++.                  .+.+|.|||++|++.|+.+++++|+..+.+     
T Consensus       575 TPLH~Aa~~G~~~i~~LLlk~GA~vna------------------~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~  636 (1143)
T KOG4177|consen  575 TPLHQAAQQGHNDIAELLLKHGASVNA------------------ADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATD  636 (1143)
T ss_pred             ChhhHHHHcChHHHHHHHHHcCCCCCc------------------ccccCcchhHHHHHhcccchhhHHHhccCcccccc
Confidence            999999999999999999999999887                  999999999999999999999999999998     


Q ss_pred             cccccccCCCcHHHHHHhc
Q 043188          174 YQYSANNYGKTPLYMAADY  192 (197)
Q Consensus       174 ~~~~~~~~g~tpl~~A~~~  192 (197)
                      .. ..+..|.+|..++...
T Consensus       637 ~~-~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  637 PV-KENRKGAVPEDVAEEL  654 (1143)
T ss_pred             ch-hhhhcccChhhHHHHh
Confidence            66 7778999999987654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.83  E-value=1.9e-20  Score=149.56  Aligned_cols=162  Identities=12%  Similarity=0.077  Sum_probs=117.6

Q ss_pred             cccccCCHHHHHHHHcC---CcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhc--ccccHHHHHHHHHhCCc--cccc
Q 043188           20 ISQSQIDPNLFKAAAAG---NLEPFKDMAREVIERLLTAKTKNTILHINIISQER--ENVSTKFVAEILEKCPS--LLLQ   92 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~--~~~~~~~l~~~l~~~~~--~~~~   92 (197)
                      ..+..|.||||+|+..|   +.++|+.|+++|++++.+|..|.||||+|+  ..+  +.+++++|++.    ++  ..+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa--~~~~~~~eIv~~Ll~~----~~~~~~~~  109 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYS--KRKYVKSQIVHLLISS----YSNASNEL  109 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHH--HcCCCcHHHHHHHHhc----CCCCCccc
Confidence            45667999999999997   489999999999999999999999999999  755  78999999885    43  3355


Q ss_pred             CCCCCCcHHHHHHH--hCCHHHHHHHHH-cCCCCccchh-----h---------------HHhhHHHHHHHhh-------
Q 043188           93 VNAKGDTPLHVAAK--FGHSDIVRVLVE-RAKLPQHENE-----E---------------LESRVGAARQMIR-------  142 (197)
Q Consensus        93 ~~~~~~t~l~~a~~--~~~~~~~~~ll~-~~~~~~~~~~-----~---------------~~~~~~~~~~~~~-------  142 (197)
                      .+.-+.+|||.++.  +++.+++++|+. .+.++.....     .               .-..+...++..+       
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            56668888888877  778888999986 4444433211     0               0111111122221       


Q ss_pred             ccCCCCc-hHHHHH------HhcCCHHHHHHHhhcCCCcccccccCCCcHHHH
Q 043188          143 MTNNEKN-TALHEA------VCHQNVDVVELLTKEDPDYQYSANNYGKTPLYM  188 (197)
Q Consensus       143 ~~~~~g~-t~l~~a------~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~  188 (197)
                      ..+.... |.||++      ....+.+++++|+.+|++++ .+|..|.||||+
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN-~kd~~G~TpLh~  241 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIH-GRDEGGSLPIQY  241 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCC-CCCCCCCCHHHH
Confidence            1222233 345533      34568899999999999998 999999999996

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=2.4e-21  Score=147.06  Aligned_cols=162  Identities=23%  Similarity=0.249  Sum_probs=140.6

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHh
Q 043188           28 NLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKF  107 (197)
Q Consensus        28 ~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~  107 (197)
                      .|..||..|+.+-++.|+..|.+++..+.+|.|+||-+|  .-.+.++++++++.    ++.++..+..++||||.|+..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~--id~~~e~v~~l~e~----ga~Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQAC--IDDNLEMVKFLVEN----GANVNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHH--hcccHHHHHHHHHh----cCCccccccccCCcchhhccc
Confidence            488899999999999999999988888889999999999  99999999999997    999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccchhhHH-----------------------------------hhHHH------HHHHhhccCC
Q 043188          108 GHSDIVRVLVERAKLPQHENEELE-----------------------------------SRVGA------ARQMIRMTNN  146 (197)
Q Consensus       108 ~~~~~~~~ll~~~~~~~~~~~~~~-----------------------------------~~~~~------~~~~~~~~~~  146 (197)
                      ++..++++|+.+|+++...+.++.                                   .++..      .+.+.+..+.
T Consensus       117 g~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~  196 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHA  196 (527)
T ss_pred             ccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccc
Confidence            999999999999888666332211                                   11111      1333455666


Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          147 EKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       147 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      .|-|.||+|+..|+.++.++|++.|.++. .+|..|+||||.|+.+|..+
T Consensus       197 rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~-~~D~dgWtPlHAAA~Wg~~~  245 (527)
T KOG0505|consen  197 RGATALHVAAANGYTEVAALLLQAGYSVN-IKDYDGWTPLHAAAHWGQED  245 (527)
T ss_pred             ccchHHHHHHhhhHHHHHHHHHHhccCcc-cccccCCCcccHHHHhhhHh
Confidence            69999999999999999999999999999 99999999999999988754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.83  E-value=4.7e-20  Score=149.66  Aligned_cols=145  Identities=15%  Similarity=0.180  Sum_probs=120.4

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCC---CC---
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNA---KG---   97 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~---   97 (197)
                      ...+++++|+..|+.++|+.|+++|.+++.+|..|.||||+++....++.+++++|++.    |++++.++.   .|   
T Consensus       102 ~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~----Ga~vn~~d~~~~~g~~~  177 (661)
T PHA02917        102 DFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN----GCSVLYEDEDDEYGYAY  177 (661)
T ss_pred             CcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc----CCCcccccccccccccc
Confidence            34577888999999999999999999999999999999996541156899999999996    888875543   23   


Q ss_pred             --------CcHHHHHHH-----------hCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhc
Q 043188           98 --------DTPLHVAAK-----------FGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCH  158 (197)
Q Consensus        98 --------~t~l~~a~~-----------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~  158 (197)
                              .||||+|+.           +++.+++++|++.|++++.                  .+..|.||||+|+..
T Consensus       178 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~------------------~d~~G~TpLh~A~~~  239 (661)
T PHA02917        178 DDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS------------------IDKNYCTALQYYIKS  239 (661)
T ss_pred             ccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc------------------CCCCCCcHHHHHHHc
Confidence                    599999976           4578999999999999876                  899999999999999


Q ss_pred             CCH--HHHHHHhhcCCCccc---ccccCCCcHHHHHHh
Q 043188          159 QNV--DVVELLTKEDPDYQY---SANNYGKTPLYMAAD  191 (197)
Q Consensus       159 ~~~--~~~~~Ll~~g~~~~~---~~~~~g~tpl~~A~~  191 (197)
                      |+.  +++++|++ |++...   ..+..|.+|+++|+.
T Consensus       240 g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~y  276 (661)
T PHA02917        240 SHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADY  276 (661)
T ss_pred             CCCcHHHHHHHHh-CCcccccccccCcccccchHHHHH
Confidence            985  79999975 877642   456678889999884

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.82  E-value=9.5e-20  Score=151.16  Aligned_cols=163  Identities=20%  Similarity=0.123  Sum_probs=118.2

Q ss_pred             ccccccCCHHHH-HHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcc------cc
Q 043188           19 EISQSQIDPNLF-KAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSL------LL   91 (197)
Q Consensus        19 ~~~~~~~~~~l~-~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~------~~   91 (197)
                      ...++.|.|||| .|+..++.++++.|++.|.    .+..|.||||+|+  . +..+.+..++.++......      .+
T Consensus        46 n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~--~-~~~~~v~~ll~~l~~~~~~~~~~~~~~  118 (743)
T TIGR00870        46 NCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS--L-EYVDAVEAILLHLLAAFRKSGPLELAN  118 (743)
T ss_pred             CCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH--h-ccHHHHHHHHHHHhhcccccCchhhhc
Confidence            345678889999 8888888889888888776    5668999999888  5 2223333344333322211      11


Q ss_pred             ----cCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHH
Q 043188           92 ----QVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELL  167 (197)
Q Consensus        92 ----~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  167 (197)
                          .....|.||||+|+..++.+++++|+++|++++.........    ..........|.||||.|+..++.+++++|
T Consensus       119 ~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~----~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lL  194 (743)
T TIGR00870       119 DQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFV----KSQGVDSFYHGESPLNAAACLGSPSIVALL  194 (743)
T ss_pred             cccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhh----cCCCCCcccccccHHHHHHHhCCHHHHHHH
Confidence                123469999999999999999999999999987522100000    000001124689999999999999999999


Q ss_pred             hhcCCCcccccccCCCcHHHHHHhcc
Q 043188          168 TKEDPDYQYSANNYGKTPLYMAADYR  193 (197)
Q Consensus       168 l~~g~~~~~~~~~~g~tpl~~A~~~~  193 (197)
                      ++.|++++ .+|..|+||||+|+..+
T Consensus       195 l~~gadin-~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       195 SEDPADIL-TADSLGNTLLHLLVMEN  219 (743)
T ss_pred             hcCCcchh-hHhhhhhHHHHHHHhhh
Confidence            99999998 89999999999999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02730 ankyrin-like protein; Provisional

Probab=99.82  E-value=1e-19  Score=145.37  Aligned_cols=142  Identities=15%  Similarity=0.093  Sum_probs=120.5

Q ss_pred             CCHHHHHHHHcC---CcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcc----cccHHHHHHHHHhCCc--ccccCCC
Q 043188           25 IDPNLFKAAAAG---NLEPFKDMAREVIERLLTAKTKNTILHINIISQERE----NVSTKFVAEILEKCPS--LLLQVNA   95 (197)
Q Consensus        25 ~~~~l~~a~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~----~~~~~~l~~~l~~~~~--~~~~~~~   95 (197)
                      .+..|+.....|   +.++++.|+++|++++.+ ..|.||||+|+  ..+.    .+++++|+..    |+  +++.++.
T Consensus       343 ~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa--~~nnn~i~~eIvelLIs~----Ga~~dIN~kd~  415 (672)
T PHA02730        343 VQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYF--VNNNNIVDVNVVRFIVEN----NGHMAINHVSN  415 (672)
T ss_pred             HHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHH--HHcCCcchHHHHHHHHHc----CCCcccccccc
Confidence            345788888877   588999999999999976 68999999999  7764    6999999885    54  6888889


Q ss_pred             CCCcHHHH---HHHhC---------CHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHH
Q 043188           96 KGDTPLHV---AAKFG---------HSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDV  163 (197)
Q Consensus        96 ~~~t~l~~---a~~~~---------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  163 (197)
                      .|.||||.   +...+         ..+++++|+.+|++++.                  .|..|.||||+|+..++.++
T Consensus       416 ~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINa------------------kD~~G~TPLh~Aa~~~~~ei  477 (672)
T PHA02730        416 NGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDM------------------IDNENKTLLYYAVDVNNIQF  477 (672)
T ss_pred             CCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhc------------------cCCCCCCHHHHHHHhCCHHH
Confidence            99999984   33232         23569999999999876                  99999999999999999999


Q ss_pred             HHHHhhcCCCccccccc-CCCcHHHHHHhc
Q 043188          164 VELLTKEDPDYQYSANN-YGKTPLYMAADY  192 (197)
Q Consensus       164 ~~~Ll~~g~~~~~~~~~-~g~tpl~~A~~~  192 (197)
                      +++|++.|++++ .++. .|.||+++|+..
T Consensus       478 ve~LI~~GAdIN-~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        478 ARRLLEYGASVN-TTSRSIINTAIQKSSYR  506 (672)
T ss_pred             HHHHHHCCCCCC-CCCCcCCcCHHHHHHHh
Confidence            999999999998 8886 699999999863

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=3.3e-20  Score=131.74  Aligned_cols=112  Identities=29%  Similarity=0.293  Sum_probs=55.6

Q ss_pred             cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHh
Q 043188           53 LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELES  132 (197)
Q Consensus        53 ~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  132 (197)
                      .-|..|.+||||||  +.|+..+++.|+.-    |+.+|..+....||||+|+..|+.++++.|+...+++++       
T Consensus        29 ~gddhgfsplhwaa--kegh~aivemll~r----garvn~tnmgddtplhlaaahghrdivqkll~~kadvna-------   95 (448)
T KOG0195|consen   29 VGDDHGFSPLHWAA--KEGHVAIVEMLLSR----GARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNA-------   95 (448)
T ss_pred             cccccCcchhhhhh--hcccHHHHHHHHhc----ccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccch-------
Confidence            33444555555555  55555544444442    444554444444555555555555555555554444443       


Q ss_pred             hHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHH
Q 043188          133 RVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA  189 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A  189 (197)
                                 .+..|.||||+||.-|+..+.+-|+..|+-++ +.+..|.||+..|
T Consensus        96 -----------vnehgntplhyacfwgydqiaedli~~ga~v~-icnk~g~tpldka  140 (448)
T KOG0195|consen   96 -----------VNEHGNTPLHYACFWGYDQIAEDLISCGAAVN-ICNKKGMTPLDKA  140 (448)
T ss_pred             -----------hhccCCCchhhhhhhcHHHHHHHHHhccceee-ecccCCCCchhhh
Confidence                       44455555555555555555555555555544 4555555555443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.79  E-value=6.4e-19  Score=146.25  Aligned_cols=162  Identities=20%  Similarity=0.163  Sum_probs=120.2

Q ss_pred             hhccCCCCcccccccCCHHHHHHHHcCCcHHHHHHHHHHHHH----------h----cccccCCcHHHHHHHhhhccccc
Q 043188           10 EASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIER----------L----LTAKTKNTILHINIISQERENVS   75 (197)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~----------~----~~~~~g~t~lh~a~~~~~~~~~~   75 (197)
                      ....+...+. .+..|+|+||.|+. +..+.++.++....+.          +    .....|.||||+|+  ..++.++
T Consensus        68 iv~lLl~~g~-~~~~G~T~Lh~A~~-~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa--~~~~~ei  143 (743)
T TIGR00870        68 LTELLLNLSC-RGAVGDTLLHAISL-EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAA--HRQNYEI  143 (743)
T ss_pred             HHHHHHhCCC-CCCcChHHHHHHHh-ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHH--HhCCHHH
Confidence            3444444443 56789999999987 3344444444432211          1    12346999999999  9999999


Q ss_pred             HHHHHHHHHhCCcccccCC--------------CCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHh
Q 043188           76 TKFVAEILEKCPSLLLQVN--------------AKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI  141 (197)
Q Consensus        76 ~~~l~~~l~~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  141 (197)
                      +++|++.    +++++.++              ..|.||||+|+..++.+++++|++.|++++.                
T Consensus       144 VklLL~~----GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~----------------  203 (743)
T TIGR00870       144 VKLLLER----GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILT----------------  203 (743)
T ss_pred             HHHHHhC----CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhh----------------
Confidence            9999985    77777542              3589999999999999999999999988765                


Q ss_pred             hccCCCCchHHHHHHhcC---------CHHHHHHHhhcCCCcc------cccccCCCcHHHHHHhcccCCC
Q 043188          142 RMTNNEKNTALHEAVCHQ---------NVDVVELLTKEDPDYQ------YSANNYGKTPLYMAADYRSSNM  197 (197)
Q Consensus       142 ~~~~~~g~t~l~~a~~~~---------~~~~~~~Ll~~g~~~~------~~~~~~g~tpl~~A~~~~~~~i  197 (197)
                        .|..|+||||+|+..+         ...+.+++++.++...      ...|..|.|||++|+..|+.++
T Consensus       204 --~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l  272 (743)
T TIGR00870       204 --ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVL  272 (743)
T ss_pred             --HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccH
Confidence              8889999999999876         2345666666554431      2678899999999999988653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=1.7e-18  Score=106.54  Aligned_cols=86  Identities=34%  Similarity=0.425  Sum_probs=53.8

Q ss_pred             HHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHh
Q 043188           62 LHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI  141 (197)
Q Consensus        62 lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  141 (197)
                      ||+|+  +.++.++++++++.    +..++.    |.||||+|+.+++.+++++|++.|+++..                
T Consensus         1 L~~A~--~~~~~~~~~~ll~~----~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~----------------   54 (89)
T PF12796_consen    1 LHIAA--QNGNLEILKFLLEK----GADINL----GNTALHYAAENGNLEIVKLLLENGADINS----------------   54 (89)
T ss_dssp             HHHHH--HTTTHHHHHHHHHT----TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-----------------
T ss_pred             CHHHH--HcCCHHHHHHHHHC----cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccc----------------
Confidence            56666  66666666666663    333333    56666666666666666666666666554                


Q ss_pred             hccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcc
Q 043188          142 RMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQ  175 (197)
Q Consensus       142 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  175 (197)
                        .+..|+||||+|+..++.+++++|++.|++++
T Consensus        55 --~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   55 --QDKNGNTALHYAAENGNLEIVKLLLEHGADVN   86 (89)
T ss_dssp             --BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TT
T ss_pred             --cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence              55666666666666666666666666666655

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.77  E-value=1.8e-18  Score=114.19  Aligned_cols=110  Identities=26%  Similarity=0.240  Sum_probs=100.0

Q ss_pred             HHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHH
Q 043188           61 ILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQM  140 (197)
Q Consensus        61 ~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~  140 (197)
                      .+-+|+  ..+....++.|+..   ....+|.+|.+++||||-|+.+++.++++.|+..|++...               
T Consensus        66 l~lwaa--e~nrl~eV~~lL~e---~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a---------------  125 (228)
T KOG0512|consen   66 LLLWAA--EKNRLTEVQRLLSE---KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEA---------------  125 (228)
T ss_pred             HHHHHH--hhccHHHHHHHHHh---ccccccccccccccHHHHHHhcCchHHHHHHHHccCCccc---------------
Confidence            467888  88888888877664   5777999999999999999999999999999999999887               


Q ss_pred             hhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhccc
Q 043188          141 IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRS  194 (197)
Q Consensus       141 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~  194 (197)
                         .-..|+||||.|+.-.+.+++.+|+++|+|++ +......||||+|+..++
T Consensus       126 ---~T~~GWTPLhSAckWnN~~va~~LLqhgaDVn-A~t~g~ltpLhlaa~~rn  175 (228)
T KOG0512|consen  126 ---KTNEGWTPLHSACKWNNFEVAGRLLQHGADVN-AQTKGLLTPLHLAAGNRN  175 (228)
T ss_pred             ---ccccCccchhhhhcccchhHHHHHHhccCccc-ccccccchhhHHhhcccc
Confidence               88899999999999999999999999999999 888889999999998765

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.77  E-value=1.5e-18  Score=136.73  Aligned_cols=169  Identities=21%  Similarity=0.131  Sum_probs=139.8

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      .++..+-|+||-|+.+|+...++.|++...-++..+..|.+|||+|+  -.|+.++++.++..    .+.+|..+..|.|
T Consensus        44 ~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaa--w~g~~e~vkmll~q----~d~~na~~~e~~t  117 (854)
T KOG0507|consen   44 LQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAA--WNGNLEIVKMLLLQ----TDILNAVNIENET  117 (854)
T ss_pred             ccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehh--hcCcchHHHHHHhc----ccCCCcccccCcC
Confidence            46668899999999999999999999988877778889999999999  99999999999886    6888999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH------HHH-----------------hhccCCCCchHHHHHH
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA------RQM-----------------IRMTNNEKNTALHEAV  156 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~------~~~-----------------~~~~~~~g~t~l~~a~  156 (197)
                      |||.|++.++.+++.+|+.+++++..++.........+      ++.                 ....+..+.+|+|.|+
T Consensus       118 plhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaa  197 (854)
T KOG0507|consen  118 PLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAA  197 (854)
T ss_pred             ccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhh
Confidence            99999999999999999999999877654332222211      110                 1334556788999999


Q ss_pred             hcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       157 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      +.|+.++++.|++.|.+++ .... .-|+||.|+.+|..+
T Consensus       198 kngh~~~~~~ll~ag~din-~~t~-~gtalheaalcgk~e  235 (854)
T KOG0507|consen  198 KNGHVECMQALLEAGFDIN-YTTE-DGTALHEAALCGKAE  235 (854)
T ss_pred             hcchHHHHHHHHhcCCCcc-cccc-cchhhhhHhhcCcch
Confidence            9999999999999999998 4433 459999999988754

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.77  E-value=4.1e-19  Score=139.84  Aligned_cols=146  Identities=27%  Similarity=0.340  Sum_probs=131.1

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHH-------------HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCccccc
Q 043188           26 DPNLFKAAAAGNLEPFKDMARE-------------VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQ   92 (197)
Q Consensus        26 ~~~l~~a~~~g~~~~v~~Ll~~-------------g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~   92 (197)
                      ..-+..|++.|+++++..+|+.             ..+++..|..|.|.||.|+  ..|+.+++++|+++    ...+..
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~--Lng~~~is~llle~----ea~ldl   77 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAV--LNGQNQISKLLLDY----EALLDL   77 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHH--hcCchHHHHHHhcc----hhhhhh
Confidence            3457899999999999999983             2244578899999999999  99999999999986    677777


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCC
Q 043188           93 VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDP  172 (197)
Q Consensus        93 ~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  172 (197)
                      .+..|.+|||+|+.+|+.++++.++.++...++                  ...+|.||||.|+++|+.+++.+|++.|+
T Consensus        78 ~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na------------------~~~e~~tplhlaaqhgh~dvv~~Ll~~~a  139 (854)
T KOG0507|consen   78 CDTKGILPLHLAAWNGNLEIVKMLLLQTDILNA------------------VNIENETPLHLAAQHGHLEVVFYLLKKNA  139 (854)
T ss_pred             hhccCcceEEehhhcCcchHHHHHHhcccCCCc------------------ccccCcCccchhhhhcchHHHHHHHhcCC
Confidence            788899999999999999999999999866655                  88899999999999999999999999999


Q ss_pred             CcccccccCCCcHHHHHHhcccCC
Q 043188          173 DYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       173 ~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      ++. .+|..++|+++.|++.|..+
T Consensus       140 dp~-i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen  140 DPF-IRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             Ccc-ccCcccccHHHHHHHhhhhH
Confidence            998 99999999999999998754

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=1.5e-18  Score=106.81  Aligned_cols=87  Identities=30%  Similarity=0.311  Sum_probs=78.8

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhC
Q 043188           29 LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFG  108 (197)
Q Consensus        29 l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  108 (197)
                      ||.|++.|+.+++++|++.+.+++.    |.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~--~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAA--ENGNLEIVKLLLEN----GADINSQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHH--HTTTHHHHHHHHHT----TTCTT-BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHH--HcCCHHHHHHHHHh----cccccccCCCCCCHHHHHHHcC
Confidence            7999999999999999998876544    889999999  99999999999995    8899999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCcc
Q 043188          109 HSDIVRVLVERAKLPQH  125 (197)
Q Consensus       109 ~~~~~~~ll~~~~~~~~  125 (197)
                      +.+++++|+++|++++.
T Consensus        71 ~~~~~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   71 NLEIVKLLLEHGADVNI   87 (89)
T ss_dssp             HHHHHHHHHHTTT-TTS
T ss_pred             CHHHHHHHHHcCCCCCC
Confidence            99999999999988765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=1.1e-17  Score=108.94  Aligned_cols=123  Identities=25%  Similarity=0.309  Sum_probs=110.6

Q ss_pred             cccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHH
Q 043188           22 QSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPL  101 (197)
Q Consensus        22 ~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l  101 (197)
                      +..|.++|+.|+..|+.+.++.|++.+.+.+..+..|.+|+|+|+  ..+..+++++++..    +..++..+..+.||+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~--~~~~~~~~~~ll~~----~~~~~~~~~~~~~~l   77 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAA--KNGHLEIVKLLLEK----GADVNARDKDGNTPL   77 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHH--HcCCHHHHHHHHHc----CCCccccCCCCCCHH
Confidence            356889999999999999999999999877778889999999999  99999888888885    667777888899999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHh
Q 043188          102 HVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLT  168 (197)
Q Consensus       102 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  168 (197)
                      |+|+..++.+++++|+..+.....                  .+..+.||++.|...++.+++++|+
T Consensus        78 ~~a~~~~~~~~~~~L~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          78 HLAARNGNLDVVKLLLKHGADVNA------------------RDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCcc------------------cCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999999866654                  7889999999999999999999885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=1.9e-17  Score=107.76  Aligned_cols=117  Identities=32%  Similarity=0.426  Sum_probs=104.9

Q ss_pred             ccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhh
Q 043188           54 TAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESR  133 (197)
Q Consensus        54 ~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  133 (197)
                      .+..|.||||+|+  ..++.++++++++.    +...+.++..|.+|+|+|+..++.+++++|++.+.....        
T Consensus         3 ~~~~g~t~l~~a~--~~~~~~~i~~li~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~--------   68 (126)
T cd00204           3 RDEDGRTPLHLAA--SNGHLEVVKLLLEN----GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA--------   68 (126)
T ss_pred             cCcCCCCHHHHHH--HcCcHHHHHHHHHc----CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc--------
Confidence            4568999999999  99999999999886    666678888999999999999999999999999976554        


Q ss_pred             HHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccC
Q 043188          134 VGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       134 ~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                                .+..+.||+|+|+..++.+++++|++.+.+.. ..+..+.||+++|...++.
T Consensus        69 ----------~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~~~~~  119 (126)
T cd00204          69 ----------RDKDGNTPLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHL  119 (126)
T ss_pred             ----------cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCH
Confidence                      77899999999999999999999999998877 7889999999999988654

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.75  E-value=6e-18  Score=134.48  Aligned_cols=150  Identities=23%  Similarity=0.260  Sum_probs=129.5

Q ss_pred             cccCCHHHHHHHHc---CCcHHHHHHHHHHHHHh-----cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccC
Q 043188           22 QSQIDPNLFKAAAA---GNLEPFKDMAREVIERL-----LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQV   93 (197)
Q Consensus        22 ~~~~~~~l~~a~~~---g~~~~v~~Ll~~g~~~~-----~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~   93 (197)
                      -.-|.|+||.|..+   ++.++++.|++.-+...     ...+.|.||||+|+  ...+.+++++|++.    +++++.+
T Consensus       140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAI--v~~~~~~V~lLl~~----gADV~aR  213 (782)
T KOG3676|consen  140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAI--VNRDAELVRLLLAA----GADVHAR  213 (782)
T ss_pred             cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHH--HhccHHHHHHHHHc----CCchhhH
Confidence            34688999999984   45578999998655432     34589999999999  99999999999986    6666554


Q ss_pred             CC-----------------------CCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCch
Q 043188           94 NA-----------------------KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNT  150 (197)
Q Consensus        94 ~~-----------------------~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  150 (197)
                      ..                       .|..||.+|+-.++.+++++|+++++++++                  +|..|+|
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~a------------------qDS~GNT  275 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNA------------------QDSNGNT  275 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCc------------------cccCCCh
Confidence            32                       588999999999999999999999999887                  9999999


Q ss_pred             HHHHHHhcCCHHHHHHHhhcCCC--cccccccCCCcHHHHHHhcccCC
Q 043188          151 ALHEAVCHQNVDVVELLTKEDPD--YQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       151 ~l~~a~~~~~~~~~~~Ll~~g~~--~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      .||..+-+-..+|...+++.|++  .. .+|..|-|||..|++.|..+
T Consensus       276 VLH~lVi~~~~~My~~~L~~ga~~l~~-v~N~qgLTPLtLAaklGk~e  322 (782)
T KOG3676|consen  276 VLHMLVIHFVTEMYDLALELGANALEH-VRNNQGLTPLTLAAKLGKKE  322 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcccc-ccccCCCChHHHHHHhhhHH
Confidence            99999998889999999999999  66 89999999999999988754

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.74  E-value=2.4e-18  Score=125.51  Aligned_cols=123  Identities=24%  Similarity=0.246  Sum_probs=106.4

Q ss_pred             HhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHh-----CCHHHHHHHHHcCCCCcc
Q 043188           51 RLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKF-----GHSDIVRVLVERAKLPQH  125 (197)
Q Consensus        51 ~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~-----~~~~~~~~ll~~~~~~~~  125 (197)
                      +|+-|..|+|+|||++  .+++.++++.|++.   ...+++.+++-|+||+++++..     .+.++|.-|+..|.....
T Consensus       261 VNlaDsNGNTALHYsV--SHaNF~VV~~LLDS---gvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaK  335 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAV--SHANFDVVSILLDS---GVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAK  335 (452)
T ss_pred             hhhhcCCCCeeeeeee--cccchHHHHHHhcc---CcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchh
Confidence            4568899999999999  99999999999874   6788999999999999988655     345678888887653322


Q ss_pred             chhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCCC
Q 043188          126 ENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM  197 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~i  197 (197)
                                        ....|+|+|.+|+.+|..++++.|+.+|+|++ +.|..|-|+|+.|+.+|+.+|
T Consensus       336 ------------------AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN-iQDdDGSTALMCA~EHGhkEi  388 (452)
T KOG0514|consen  336 ------------------ASQHGQTALMLAVSHGRVDMVKALLACGADVN-IQDDDGSTALMCAAEHGHKEI  388 (452)
T ss_pred             ------------------hhhhcchhhhhhhhcCcHHHHHHHHHccCCCc-cccCCccHHHhhhhhhChHHH
Confidence                              56689999999999999999999999999999 999999999999999999764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.73  E-value=3.5e-17  Score=129.93  Aligned_cols=142  Identities=14%  Similarity=0.139  Sum_probs=122.0

Q ss_pred             ccCCHHHHHHHHcC--CcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCC--C
Q 043188           23 SQIDPNLFKAAAAG--NLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKG--D   98 (197)
Q Consensus        23 ~~~~~~l~~a~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~   98 (197)
                      ...+..|+.....+  +.++++.|++.|.+.. ++ ...++++.|+  ..++.+++++|+..    |++++.++..|  .
T Consensus       304 ~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~-r~-~~~n~~~~Aa--~~gn~eIVelLIs~----GADIN~kD~~g~~~  375 (631)
T PHA02792        304 DSIQDLLSEYVSYHTVYINVIKCMIDEGATLY-RF-KHINKYFQKF--DNRDPKVVEYILKN----GNVVVEDDDNIINI  375 (631)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHCCCccc-cC-CcchHHHHHH--HcCCHHHHHHHHHc----CCchhhhcCCCCCh
Confidence            34566788888888  6778999999999764 22 3567789999  99999999999986    89999888764  6


Q ss_pred             cHHHHHHHhCCHH---HHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcc
Q 043188           99 TPLHVAAKFGHSD---IVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQ  175 (197)
Q Consensus        99 t~l~~a~~~~~~~---~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  175 (197)
                      ||||+|+.....+   ++++++.+|++++.                  .|..|.||||+|+..++.+++++|+++|++++
T Consensus       376 TpLh~A~~n~~~~v~~IlklLIs~GADIN~------------------kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN  437 (631)
T PHA02792        376 MPLFPTLSIHESDVLSILKLCKPYIDDINK------------------IDKHGRSILYYCIESHSVSLVEWLIDNGADIN  437 (631)
T ss_pred             hHHHHHHHhccHhHHHHHHHHHhcCCcccc------------------ccccCcchHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9999987776654   57888999998776                  89999999999999999999999999999998


Q ss_pred             cccccCCCcHHHHHHh
Q 043188          176 YSANNYGKTPLYMAAD  191 (197)
Q Consensus       176 ~~~~~~g~tpl~~A~~  191 (197)
                       .++..|.|||++|..
T Consensus       438 -~kD~~G~TpL~~A~~  452 (631)
T PHA02792        438 -ITTKYGSTCIGICVI  452 (631)
T ss_pred             -CcCCCCCCHHHHHHH
Confidence             999999999999975

>PHA02792 ankyrin-like protein; Provisional

Probab=99.72  E-value=2.7e-17  Score=130.55  Aligned_cols=166  Identities=10%  Similarity=-0.021  Sum_probs=133.6

Q ss_pred             cccCCHHHHHHHHcCCc-HHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcH
Q 043188           22 QSQIDPNLFKAAAAGNL-EPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTP  100 (197)
Q Consensus        22 ~~~~~~~l~~a~~~g~~-~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~  100 (197)
                      ..++.|||+....+.+. ..++.++..+.+++..+.+|.+++|+-++ ..|+.|++++|+.+    |++++.++..+.+|
T Consensus        34 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s-~n~~lElvk~LI~~----GAdvN~~~n~~~~~  108 (631)
T PHA02792         34 EYDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCS-DNIDIELLKLLISK----GLEINSIKNGINIV  108 (631)
T ss_pred             ccCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHH-hcccHHHHHHHHHc----CCCcccccCCCCcc
Confidence            45566899988776653 34567777788888888899999998874 67899999999997    99999999889999


Q ss_pred             HHHHHH-hCCHHHHHHHHHcCCCCccchhhHHhhHH------------------HHHHHhhccCCCCchHHHHHHhcC--
Q 043188          101 LHVAAK-FGHSDIVRVLVERAKLPQHENEELESRVG------------------AARQMIRMTNNEKNTALHEAVCHQ--  159 (197)
Q Consensus       101 l~~a~~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~g~t~l~~a~~~~--  159 (197)
                      +|+|+. .++.+++++|++.|+++......+-.++.                  .++..++..+..|.||||+|+..+  
T Consensus       109 l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~  188 (631)
T PHA02792        109 EKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQ  188 (631)
T ss_pred             eeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCc
Confidence            999966 69999999999999885542222111110                  112345778889999999999988  


Q ss_pred             -----CHHHHHHHhhcCCCcccccccCCCcHHHHHHhcc
Q 043188          160 -----NVDVVELLTKEDPDYQYSANNYGKTPLYMAADYR  193 (197)
Q Consensus       160 -----~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~  193 (197)
                           +.++++.|+.+|++++ .+|..|.||||+|+.+.
T Consensus       189 ~~~~~~~~v~k~Li~~g~~~~-~~d~~g~t~l~~~~~~~  226 (631)
T PHA02792        189 DGYATSLDVINYLISHEKEMR-YYTYREHTTLYYYVDKC  226 (631)
T ss_pred             ccccCCHHHHHHHHhCCCCcC-ccCCCCChHHHHHHHcc
Confidence                 8999999999999998 88999999999999886

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=2.2e-17  Score=117.47  Aligned_cols=114  Identities=20%  Similarity=0.170  Sum_probs=105.1

Q ss_pred             ccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           19 EISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        19 ~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ...+.-|-+|||+|++.|+..+++.|+.+|..++.++....||||+|+  ..|+.++++.|+..    .+++|..+..|.
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaa--ahghrdivqkll~~----kadvnavnehgn  101 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAA--AHGHRDIVQKLLSR----KADVNAVNEHGN  101 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhh--hcccHHHHHHHHHH----hcccchhhccCC
Confidence            356667778999999999999999999999999988888899999999  99999999998886    889999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHH
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV  156 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~  156 (197)
                      |||||||.-|...+.+-|+..|+.+..                  .++.|.||+..|.
T Consensus       102 tplhyacfwgydqiaedli~~ga~v~i------------------cnk~g~tpldkak  141 (448)
T KOG0195|consen  102 TPLHYACFWGYDQIAEDLISCGAAVNI------------------CNKKGMTPLDKAK  141 (448)
T ss_pred             CchhhhhhhcHHHHHHHHHhccceeee------------------cccCCCCchhhhc
Confidence            999999999999999999999998775                  8999999998875

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.70  E-value=1.1e-16  Score=94.92  Aligned_cols=92  Identities=20%  Similarity=0.163  Sum_probs=84.9

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHH
Q 043188           27 PNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAK  106 (197)
Q Consensus        27 ~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~  106 (197)
                      -.+.|++++|.++.|+..+..|.+++..- .|++|||||+  .+|+.+++.+|+..    +++++.+|++|.|||..|+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAA--D~GQl~ilefli~i----GA~i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAA--DYGQLSILEFLISI----GANIQDKDKYGITPLLSAVW   76 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhh--hcchHHHHHHHHHh----ccccCCccccCCcHHHHHHH
Confidence            45789999999999999999998777554 8999999999  99999999999987    99999999999999999999


Q ss_pred             hCCHHHHHHHHHcCCCCcc
Q 043188          107 FGHSDIVRVLVERAKLPQH  125 (197)
Q Consensus       107 ~~~~~~~~~ll~~~~~~~~  125 (197)
                      -|+.+||++|++.|++...
T Consensus        77 EGH~~cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADRTI   95 (117)
T ss_pred             HhhHHHHHHHHHcCcccce
Confidence            9999999999999998765

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.64  E-value=7.7e-16  Score=122.67  Aligned_cols=129  Identities=11%  Similarity=0.019  Sum_probs=115.4

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcc---------c--------------ccCCcHHHHHHHhhhcccccH
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLT---------A--------------KTKNTILHINIISQERENVST   76 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~---------~--------------~~g~t~lh~a~~~~~~~~~~~   76 (197)
                      .+...|+||||.|+.+.+.+.|+.|++.|+|++.+         |              +-|..||..|+  ..++.+++
T Consensus       179 ~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAA--C~nq~eiv  256 (782)
T KOG3676|consen  179 SEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAA--CTNQPEIV  256 (782)
T ss_pred             hHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHH--HcCCHHHH
Confidence            35568999999999999999999999999999721         1              23678999999  99999999


Q ss_pred             HHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHH
Q 043188           77 KFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV  156 (197)
Q Consensus        77 ~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~  156 (197)
                      ++|+++    +++++.+|..|+|.||..+.....++.++++++|++ .               +....+..|-|||.+|+
T Consensus       257 rlLl~~----gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~---------------l~~v~N~qgLTPLtLAa  316 (782)
T KOG3676|consen  257 RLLLAH----GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-A---------------LEHVRNNQGLTPLTLAA  316 (782)
T ss_pred             HHHHhc----CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-c---------------cccccccCCCChHHHHH
Confidence            999996    999999999999999999999999999999999988 1               12348999999999999


Q ss_pred             hcCCHHHHHHHhhc
Q 043188          157 CHQNVDVVELLTKE  170 (197)
Q Consensus       157 ~~~~~~~~~~Ll~~  170 (197)
                      ..|..++.+.++++
T Consensus       317 klGk~emf~~ile~  330 (782)
T KOG3676|consen  317 KLGKKEMFQHILER  330 (782)
T ss_pred             HhhhHHHHHHHHHh
Confidence            99999999999987

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.64  E-value=1.3e-15  Score=90.34  Aligned_cols=103  Identities=23%  Similarity=0.228  Sum_probs=87.3

Q ss_pred             cHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHH
Q 043188           60 TILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQ  139 (197)
Q Consensus        60 t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  139 (197)
                      .-+.|++  +.|..+-++-.+..    +-++|.. ..|++|||+|+.+|..+++++|+..|++++.              
T Consensus         4 ~~~~W~v--kNG~~DeVk~~v~~----g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~--------------   62 (117)
T KOG4214|consen    4 MSVAWNV--KNGEIDEVKQSVNE----GLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQD--------------   62 (117)
T ss_pred             hhHhhhh--ccCcHHHHHHHHHc----cccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCC--------------
Confidence            3467888  88888877766553    5555543 3799999999999999999999999999887              


Q ss_pred             HhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHH
Q 043188          140 MIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYM  188 (197)
Q Consensus       140 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~  188 (197)
                          .|+.|.|||..|++.|+.+||++|++.|++.. .+...|.+.+..
T Consensus        63 ----kDKygITPLLsAvwEGH~~cVklLL~~GAdrt-~~~PdG~~~~ea  106 (117)
T KOG4214|consen   63 ----KDKYGITPLLSAVWEGHRDCVKLLLQNGADRT-IHAPDGTALIEA  106 (117)
T ss_pred             ----ccccCCcHHHHHHHHhhHHHHHHHHHcCcccc-eeCCCchhHHhh
Confidence                99999999999999999999999999999987 777778766543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.63  E-value=2.6e-15  Score=107.42  Aligned_cols=128  Identities=25%  Similarity=0.250  Sum_probs=117.0

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcc-----cccHHHHHHHHHhCCc---ccc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERE-----NVSTKFVAEILEKCPS---LLL   91 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~-----~~~~~~l~~~l~~~~~---~~~   91 (197)
                      .....+.++++.++..++.+.+++++..|.+++.++..|.||||+|+  ..++     .++++.+++.    +.   ..+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~~~~~~ll~~----g~~~~~~~  141 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAA--LNGNPPEGNIEVAKLLLEA----GADLDVNN  141 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHH--hcCCcccchHHHHHHHHHc----CCCCCCcc
Confidence            34445778899999999999999999999999999999999999999  9999     8999999886    66   677


Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcC
Q 043188           92 QVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKED  171 (197)
Q Consensus        92 ~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  171 (197)
                      .++..|.||||+|+..++.++++.|++.++++..                  .+..|.|+++.|+..++.++++.+++.+
T Consensus       142 ~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~------------------~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         142 LRDEDGNTPLHWAALNGDADIVELLLEAGADPNS------------------RNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcc------------------cccCCCcchhhhcccchHHHHHHHHhcC
Confidence            7799999999999999999999999999999876                  7899999999999999999999999865

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.60  E-value=6.5e-15  Score=105.36  Aligned_cols=119  Identities=29%  Similarity=0.355  Sum_probs=106.5

Q ss_pred             cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCC-----HHHHHHHHHcCC--CCcc
Q 043188           53 LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGH-----SDIVRVLVERAK--LPQH  125 (197)
Q Consensus        53 ~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~ll~~~~--~~~~  125 (197)
                      ..+..+.+++|+++  ..+....+.+++..    +.+++.++..|.||||+|+..++     .++++.|++.++  ....
T Consensus        68 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~----~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~  141 (235)
T COG0666          68 ARDLDGRLPLHSAA--SKGDDKIVKLLLAS----GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN  141 (235)
T ss_pred             cCCccccCHHHHHH--HcCcHHHHHHHHHc----CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc
Confidence            34556899999999  99999998777775    88889999999999999999999     999999999999  3333


Q ss_pred             chhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccC
Q 043188          126 ENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                                       ..+..|.||||+|+..|+.++++.|++.|+++. .++..|.|++++|+..+..
T Consensus       142 -----------------~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~-~~~~~g~t~l~~a~~~~~~  193 (235)
T COG0666         142 -----------------LRDEDGNTPLHWAALNGDADIVELLLEAGADPN-SRNSYGVTALDPAAKNGRI  193 (235)
T ss_pred             -----------------ccCCCCCchhHHHHHcCchHHHHHHHhcCCCCc-ccccCCCcchhhhcccchH
Confidence                             379999999999999999999999999999998 8899999999999988764

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.56  E-value=5.9e-14  Score=100.02  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=110.6

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccC-CCCCCcHHH
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQV-NAKGDTPLH  102 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~t~l~  102 (197)
                      ....+|..++.+|+.+.+..||+.--+++..|.+|.+||..|+  +.|+.+.+++++++    ++++|.. ...++||||
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAa--ykGnl~~v~lll~~----gaDvN~~qhg~~YTpLm   84 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAA--YKGNLTLVELLLEL----GADVNDKQHGTLYTPLM   84 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHH--hcCcHHHHHHHHHh----CCCcCcccccccccHHH
Confidence            4456899999999999999999987778889999999999999  99999999999998    8888874 456899999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhh
Q 043188          103 VAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK  169 (197)
Q Consensus       103 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  169 (197)
                      .|+..|+.++.++|++.|+.+..                  .+.-|+|+...|+.-|+-++|.++-.
T Consensus        85 FAALSGn~dvcrllldaGa~~~~------------------vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   85 FAALSGNQDVCRLLLDAGARMYL------------------VNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHHHcCCchHHHHHHhccCcccc------------------ccchhhhHHHHHHHhcchHHHHHHhc
Confidence            99999999999999999999876                  88999999999999999998887753

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=6.9e-15  Score=81.97  Aligned_cols=49  Identities=31%  Similarity=0.364  Sum_probs=32.5

Q ss_pred             HhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHH
Q 043188          140 MIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA  189 (197)
Q Consensus       140 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A  189 (197)
                      +++..|..|.||||+|+..|+.+++++|++.|++++ .+|..|+||+++|
T Consensus         8 ~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~-~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    8 DVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN-AKDKDGQTPLHYA   56 (56)
T ss_dssp             -TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----TTS--HHHH-
T ss_pred             CCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC-CCcCCCCCHHHhC
Confidence            345699999999999999999999999999999999 9999999999997

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=1.6e-14  Score=110.31  Aligned_cols=118  Identities=24%  Similarity=0.223  Sum_probs=101.1

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHh
Q 043188           28 NLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKF  107 (197)
Q Consensus        28 ~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~  107 (197)
                      .|..|+..|.++.|+.++..-.|+-..+..|.|+||.|+  ..|+.+++++|+++    ++++|..|.+|+||||+|+.-
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAi--CaghyeIVkFLi~~----ganVNa~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAI--CAGHYEIVKFLIEF----GANVNAADSDGWTPLHCAASC  626 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhh--hcchhHHHHHHHhc----CCcccCccCCCCchhhhhhhc
Confidence            378899999999999999987777777779999999999  99999999999997    999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHH--HhcCCHHHHHHHh
Q 043188          108 GHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEA--VCHQNVDVVELLT  168 (197)
Q Consensus       108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a--~~~~~~~~~~~Ll  168 (197)
                      ++..+.+.|++.|+.+.+                 ..-.++.|+..-+  .+.|+..|.+||-
T Consensus       627 Nnv~~ckqLVe~GaavfA-----------------sTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  627 NNVPMCKQLVESGAAVFA-----------------STLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             CchHHHHHHHhccceEEe-----------------eecccccchhhhcchhhhhHHHHHHHHH
Confidence            999999999999998766                 2444566665554  3456677777774

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.53  E-value=5.2e-14  Score=115.23  Aligned_cols=105  Identities=25%  Similarity=0.278  Sum_probs=90.1

Q ss_pred             HHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHH
Q 043188           61 ILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQM  140 (197)
Q Consensus        61 ~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~  140 (197)
                      .|+.|+  ..|+.+.++.|++.    +.+++.++..|.||||+|+..++.+++++|++.|++++.               
T Consensus        85 ~L~~aa--~~G~~~~vk~LL~~----Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~---------------  143 (664)
T PTZ00322         85 ELCQLA--ASGDAVGARILLTG----GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL---------------  143 (664)
T ss_pred             HHHHHH--HcCCHHHHHHHHHC----CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC---------------
Confidence            477888  88999998888875    888888999999999999999999999999999988776               


Q ss_pred             hhccCCCCchHHHHHHhcCCHHHHHHHhhc-------CCCcccccccCCCcHHHHHH
Q 043188          141 IRMTNNEKNTALHEAVCHQNVDVVELLTKE-------DPDYQYSANNYGKTPLYMAA  190 (197)
Q Consensus       141 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-------g~~~~~~~~~~g~tpl~~A~  190 (197)
                         .|..|.||||+|+..++.+++++|+++       |++.. ..+..|.+|+..+.
T Consensus       144 ---~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~-~~~~~g~~~~~~~~  196 (664)
T PTZ00322        144 ---LDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAK-PDSFTGKPPSLEDS  196 (664)
T ss_pred             ---CCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCC-ccccCCCCccchhh
Confidence               888999999999999999999999988       88777 77777777766543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.52  E-value=2.9e-14  Score=116.67  Aligned_cols=87  Identities=20%  Similarity=0.219  Sum_probs=82.9

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHH
Q 043188           27 PNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAK  106 (197)
Q Consensus        27 ~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~  106 (197)
                      ..|+.|+..|+.+.++.|++.|.+++.+|..|.||||+|+  ..|+.+++++|++.    +++++.++..|.||||+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa--~~g~~eiv~~LL~~----Gadvn~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIAC--ANGHVQVVRVLLEF----GADPTLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHH--HCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHH
Confidence            3588999999999999999999999999999999999999  99999999999996    89999999999999999999


Q ss_pred             hCCHHHHHHHHHc
Q 043188          107 FGHSDIVRVLVER  119 (197)
Q Consensus       107 ~~~~~~~~~ll~~  119 (197)
                      .++.+++++|+.+
T Consensus       158 ~g~~~iv~~Ll~~  170 (664)
T PTZ00322        158 NGFREVVQLLSRH  170 (664)
T ss_pred             CCcHHHHHHHHhC
Confidence            9999999999998

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.51  E-value=7.7e-14  Score=77.29  Aligned_cols=54  Identities=37%  Similarity=0.564  Sum_probs=45.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHh
Q 043188           97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLT  168 (197)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  168 (197)
                      |.||||+|+..|+.+++++|++.+.+++.                  .|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~------------------~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINA------------------QDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-------------------B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999988776                  8999999999999999999999986

...

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.48  E-value=2.8e-14  Score=117.34  Aligned_cols=151  Identities=18%  Similarity=0.175  Sum_probs=110.9

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccc-cCCCCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLL-QVNAKGD   98 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~   98 (197)
                      .+.+.-+++|..||..|+-|.+.+|+.+|.++..+|+.|.+||.+|+  ..|+..+++.|+..    .+++. +.|+.+.
T Consensus       752 ~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaa--tagh~tvV~~llk~----ha~veaQsdrtkd  825 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAA--TAGHITVVQDLLKA----HADVEAQSDRTKD  825 (2131)
T ss_pred             ccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhc--ccCchHHHHHHHhh----hhhhhhhcccccC
Confidence            35566788999999999999999999999999889999999999999  99999999988875    44443 4677899


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccc-c
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQY-S  177 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~-~  177 (197)
                      |+|.+||..|+.++++.|+..|++...                  ++-.-.|||.+|...|+.++++.|+..|++++. .
T Consensus       826 t~lSlacsggr~~vvelLl~~gankeh------------------rnvsDytPlsla~Sggy~~iI~~llS~GseInSrt  887 (2131)
T KOG4369|consen  826 TMLSLACSGGRTRVVELLLNAGANKEH------------------RNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRT  887 (2131)
T ss_pred             ceEEEecCCCcchHHHHHHHhhccccc------------------cchhhcCchhhhcCcchHHHHHHHhhccccccccc
Confidence            999999999999999999999988776                  344444555555555555555555555544432 1


Q ss_pred             cccCCCcHHHHHHhccc
Q 043188          178 ANNYGKTPLYMAADYRS  194 (197)
Q Consensus       178 ~~~~g~tpl~~A~~~~~  194 (197)
                      ..+.|..||+.|...|+
T Consensus       888 gSklgisPLmlatmngh  904 (2131)
T KOG4369|consen  888 GSKLGISPLMLATMNGH  904 (2131)
T ss_pred             ccccCcchhhhhhhccc
Confidence            12244445555544443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.48  E-value=8.6e-14  Score=77.08  Aligned_cols=54  Identities=33%  Similarity=0.381  Sum_probs=29.4

Q ss_pred             CCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHH
Q 043188           58 KNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLV  117 (197)
Q Consensus        58 g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll  117 (197)
                      |.||||+|+  +.|+.+++++|++.    +.+++.+|..|.||||+|+..++.+++++|+
T Consensus         1 g~t~lh~A~--~~g~~~~~~~Ll~~----~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAA--RSGNLEIVKLLLEH----GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHH--HTT-HHHHHHHHHT----TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHH--HhCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666  66666666666553    5556666666666666666666666666654

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.44  E-value=5.2e-14  Score=78.43  Aligned_cols=55  Identities=20%  Similarity=0.156  Sum_probs=27.1

Q ss_pred             HHHHH-HHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHH
Q 043188           44 MAREV-IERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVA  104 (197)
Q Consensus        44 Ll~~g-~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a  104 (197)
                      ||+.| .+++.+|..|.||||+||  ..|+.+++++|++.    +.+++.++..|.||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~--~~g~~~~v~~Ll~~----g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAA--RYGHSEVVRLLLQN----GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHH--HHT-HHHHHHHHHC----T--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHH--HcCcHHHHHHHHHC----cCCCCCCcCCCCCHHHhC
Confidence            45666 666677888888888888  88888888888753    778888888888888876

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=9.4e-13  Score=93.97  Aligned_cols=115  Identities=22%  Similarity=0.148  Sum_probs=102.9

Q ss_pred             CCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH
Q 043188           58 KNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA  137 (197)
Q Consensus        58 g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  137 (197)
                      -..||..++  ..+..+....|+.-    ...+|++|..|.+||..|+..|+.++++.|++.|++++.            
T Consensus        12 ~~~~Lle~i--~Kndt~~a~~LLs~----vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~------------   73 (396)
T KOG1710|consen   12 PKSPLLEAI--DKNDTEAALALLST----VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVND------------   73 (396)
T ss_pred             hhhHHHHHH--ccCcHHHHHHHHHH----hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCc------------
Confidence            467888889  88888887777763    445889999999999999999999999999999999987            


Q ss_pred             HHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          138 RQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       138 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                           -.+..+.||||.|+..|+.++.++|++.|+... ..|+-|+|+..+|+.-|+.+
T Consensus        74 -----~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~-~vNsvgrTAaqmAAFVG~H~  126 (396)
T KOG1710|consen   74 -----KQHGTLYTPLMFAALSGNQDVCRLLLDAGARMY-LVNSVGRTAAQMAAFVGHHE  126 (396)
T ss_pred             -----ccccccccHHHHHHHcCCchHHHHHHhccCccc-cccchhhhHHHHHHHhcchH
Confidence                 478899999999999999999999999999988 89999999999999888743

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=7.3e-13  Score=101.48  Aligned_cols=111  Identities=23%  Similarity=0.135  Sum_probs=93.1

Q ss_pred             ccCCcHHHH---HHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHh
Q 043188           56 KTKNTILHI---NIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELES  132 (197)
Q Consensus        56 ~~g~t~lh~---a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  132 (197)
                      .-..+||-+   |+  -.|..++++-++..    -.+..+.+..|.|+||-|+-.|+.++|+||++.|+++++       
T Consensus       545 RvrfnPLaLLLDaa--LeGEldlVq~~i~e----v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa-------  611 (752)
T KOG0515|consen  545 RVRFNPLALLLDAA--LEGELDLVQRIIYE----VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNA-------  611 (752)
T ss_pred             ceecchHHHHHhhh--hcchHHHHHHHHHh----hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccC-------
Confidence            345666554   44  56778888777665    566778889999999999999999999999999999887       


Q ss_pred             hHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHH
Q 043188          133 RVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA  190 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~  190 (197)
                                 .|.+||||||+|+...+..+++.|++.|+-+.-..-+.+.|+..-|-
T Consensus       612 -----------~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCe  658 (752)
T KOG0515|consen  612 -----------ADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCE  658 (752)
T ss_pred             -----------ccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcc
Confidence                       99999999999999999999999999999876556667888877653

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.39  E-value=4.8e-13  Score=110.31  Aligned_cols=175  Identities=20%  Similarity=0.183  Sum_probs=132.7

Q ss_pred             CCcccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHh-cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCC
Q 043188           16 NNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERL-LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVN   94 (197)
Q Consensus        16 ~~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~   94 (197)
                      .+....+..|-++|-+|+-.|+..+|+.|++...++. ..|+.+.|+|.+||  ..|+.+++.+|+..    ++.-..++
T Consensus       781 aniehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac--sggr~~vvelLl~~----gankehrn  854 (2131)
T KOG4369|consen  781 ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC--SGGRTRVVELLLNA----GANKEHRN  854 (2131)
T ss_pred             ccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec--CCCcchHHHHHHHh----hccccccc
Confidence            3455677888889999999999999999999999888 57889999999999  99999999999887    65555677


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhH-----------------HhhHHHHHHHhhc-cCCCCchHHHHHH
Q 043188           95 AKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEEL-----------------ESRVGAARQMIRM-TNNEKNTALHEAV  156 (197)
Q Consensus        95 ~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-~~~~g~t~l~~a~  156 (197)
                      ...+|||.+|...|..+++..|+..|..++.+....                 ...+..-+.+++. ...+-+|.|-+|+
T Consensus       855 vsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~  934 (2131)
T KOG4369|consen  855 VSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLAL  934 (2131)
T ss_pred             hhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecc
Confidence            778899999999999999999999887776644211                 0000011222322 2335667777888


Q ss_pred             hcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCCC
Q 043188          157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM  197 (197)
Q Consensus       157 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~i  197 (197)
                      ..|+.+++.+||...+++. .+-..|.|||+-++..|+.|+
T Consensus       935 fqgr~evv~lLLa~~anve-hRaktgltplme~AsgGyvdv  974 (2131)
T KOG4369|consen  935 FQGRPEVVFLLLAAQANVE-HRAKTGLTPLMEMASGGYVDV  974 (2131)
T ss_pred             ccCcchHHHHHHHHhhhhh-hhcccCCcccchhhcCCcccc
Confidence            8888888888887777776 777778888888887777654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.00  E-value=3.9e-10  Score=85.75  Aligned_cols=91  Identities=25%  Similarity=0.326  Sum_probs=84.4

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHH
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHV  103 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~  103 (197)
                      .+.-.+++|++.|++..++.++=.|.|....|++.+|+||.|+  ..|+.+++++|++.   ++.+.+.+|.+|+|||--
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAA--aEG~v~v~kfl~~~---~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAA--AEGHVEVVKFLLNA---CKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeec--ccCceeHHHHHHHH---HcCCCChhhccCCCcchH
Confidence            3445689999999999999999999999999999999999999  99999999999886   678888999999999999


Q ss_pred             HHHhCCHHHHHHHHHc
Q 043188          104 AAKFGHSDIVRVLVER  119 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~  119 (197)
                      |..+++.+++++|-+.
T Consensus       580 A~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEA  595 (622)
T ss_pred             hHhcCcHHHHHHHHHH
Confidence            9999999999999876

>PF13606 Ank_3: Ankyrin repeat

Probab=98.99  E-value=7.2e-10  Score=53.07  Aligned_cols=29  Identities=31%  Similarity=0.492  Sum_probs=27.4

Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhcCCCcc
Q 043188          147 EKNTALHEAVCHQNVDVVELLTKEDPDYQ  175 (197)
Q Consensus       147 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  175 (197)
                      +|+||||+|++.|+.+++++|++.|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58999999999999999999999999976

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.90  E-value=3e-09  Score=52.29  Aligned_cols=32  Identities=34%  Similarity=0.471  Sum_probs=29.5

Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhcCCCcccccc
Q 043188          147 EKNTALHEAVCHQNVDVVELLTKEDPDYQYSAN  179 (197)
Q Consensus       147 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  179 (197)
                      +|.||||+|+..++.+++++|+++|++++ .+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADIN-ARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTT-CBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCC-CCC
Confidence            58999999999999999999999999988 554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.90  E-value=1.3e-09  Score=88.14  Aligned_cols=81  Identities=20%  Similarity=0.277  Sum_probs=48.0

Q ss_pred             cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCC-CCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHH
Q 043188           53 LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAK-GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELE  131 (197)
Q Consensus        53 ~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~  131 (197)
                      ++|..|+|+||+++  ..+..++++||+++    |.++..+|.. |+||||-|+.+|+.+|+..|+.+|.....      
T Consensus        47 ikD~~GR~alH~~~--S~~k~~~l~wLlqh----Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i------  114 (1267)
T KOG0783|consen   47 IKDRYGRTALHIAV--SENKNSFLRWLLQH----GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRI------  114 (1267)
T ss_pred             HHHhhccceeeeee--ccchhHHHHHHHhc----CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEE------
Confidence            55556666666666  56666666666665    5555555543 56666666666666666666666655443      


Q ss_pred             hhHHHHHHHhhccCCCCchHHHHHHh
Q 043188          132 SRVGAARQMIRMTNNEKNTALHEAVC  157 (197)
Q Consensus       132 ~~~~~~~~~~~~~~~~g~t~l~~a~~  157 (197)
                                  .|++|..||..-++
T Consensus       115 ------------~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  115 ------------KDKEGLSPLQFLSR  128 (1267)
T ss_pred             ------------ecccCCCHHHHHhh
Confidence                        56666666655444

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.83  E-value=1.4e-08  Score=79.30  Aligned_cols=91  Identities=29%  Similarity=0.449  Sum_probs=61.1

Q ss_pred             ccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHh
Q 043188           89 LLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLT  168 (197)
Q Consensus        89 ~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  168 (197)
                      .+-.++.+..+-||+|+..|+-++|+|++++++.                .+++..+..|.|+||.|+..++-.+..+|+
T Consensus       891 ~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~----------------elld~~de~get~lhkaa~~~~r~vc~~lv  954 (1004)
T KOG0782|consen  891 SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS----------------ELLDMADETGETALHKAACQRNRAVCQLLV  954 (1004)
T ss_pred             ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH----------------HHHHHHhhhhhHHHHHHHHhcchHHHHHHH
Confidence            3444555666777777777777777777777654                345556667777777777777777777777


Q ss_pred             hcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          169 KEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       169 ~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      +.|+... ..|..|.||-..|...|..+
T Consensus       955 dagasl~-ktd~kg~tp~eraqqa~d~d  981 (1004)
T KOG0782|consen  955 DAGASLR-KTDSKGKTPQERAQQAGDPD  981 (1004)
T ss_pred             hcchhhe-ecccCCCChHHHHHhcCCch
Confidence            7777766 66677777777666666544

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.83  E-value=9.9e-09  Score=78.66  Aligned_cols=89  Identities=21%  Similarity=0.273  Sum_probs=78.6

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHh-cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHH
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERL-LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLH  102 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~  102 (197)
                      +.+--||-.++.|++++--.||..|.+.+ .....|.||||.|+  +.|+.--+++|+-+    |+++...|..|.||+-
T Consensus       132 ~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAA--k~Gq~~Q~ElL~vY----GAD~~a~d~~GmtP~~  205 (669)
T KOG0818|consen  132 DLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAA--KAGQILQAELLAVY----GADPGAQDSSGMTPVD  205 (669)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHH--hccchhhhhHHhhc----cCCCCCCCCCCCcHHH
Confidence            34455999999999999999999999999 45568999999999  99999888888876    9999999999999999


Q ss_pred             HHHHhCCHHHHHHHHH
Q 043188          103 VAAKFGHSDIVRVLVE  118 (197)
Q Consensus       103 ~a~~~~~~~~~~~ll~  118 (197)
                      +|-..|+.++.+-|++
T Consensus       206 ~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  206 YARQGGHHELAERLVE  221 (669)
T ss_pred             HHHhcCchHHHHHHHH
Confidence            9999999887666654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.82  E-value=6.6e-09  Score=81.01  Aligned_cols=120  Identities=18%  Similarity=0.240  Sum_probs=105.6

Q ss_pred             HHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhC
Q 043188           29 LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFG  108 (197)
Q Consensus        29 l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  108 (197)
                      |..|+..+++-.++.....|.++..++.+..+.||||+  ..|+.+++++++++  .....++..+..|.|+||-|+-.+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~--~tg~~eivkyildh--~p~elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAA--KTGNGEIVKYILDH--GPSELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHH--hcCChHHHHHHHhc--CCHHHHHHHhhhhhHHHHHHHHhc
Confidence            78889999988888888888888888889999999999  99999999999997  123446667788999999999999


Q ss_pred             CHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhc
Q 043188          109 HSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE  170 (197)
Q Consensus       109 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  170 (197)
                      +..+.++|++.|+....                  .|..|.||-.-|-+.|+.+...+|-.+
T Consensus       946 ~r~vc~~lvdagasl~k------------------td~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGASLRK------------------TDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             chHHHHHHHhcchhhee------------------cccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999999998765                  899999999999999999999998643

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.82  E-value=6.4e-09  Score=84.28  Aligned_cols=84  Identities=14%  Similarity=0.117  Sum_probs=75.3

Q ss_pred             cccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhccc-ccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCC
Q 043188           18 GEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTA-KTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAK   96 (197)
Q Consensus        18 ~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   96 (197)
                      ..+.+..|.++||+++..|..+.+++|+++|.+++.+| ..|.||||-|+  +.|+.+|+-+|+.+    +..+...|..
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRai--yyG~idca~lLL~~----g~SL~i~Dke  118 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAI--YYGNIDCASLLLSK----GRSLRIKDKE  118 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhh--hhchHHHHHHHHhc----CCceEEeccc
Confidence            34677889999999999999999999999999999554 68999999999  99999999999887    8889999999


Q ss_pred             CCcHHHHHHHh
Q 043188           97 GDTPLHVAAKF  107 (197)
Q Consensus        97 ~~t~l~~a~~~  107 (197)
                      |.+||..-++-
T Consensus       119 glsplq~~~r~  129 (1267)
T KOG0783|consen  119 GLSPLQFLSRV  129 (1267)
T ss_pred             CCCHHHHHhhc
Confidence            99999877653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.82  E-value=9e-09  Score=49.23  Aligned_cols=29  Identities=41%  Similarity=0.644  Sum_probs=24.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCc
Q 043188           96 KGDTPLHVAAKFGHSDIVRVLVERAKLPQ  124 (197)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~  124 (197)
                      +|+||||+|+.+++.+++++|++.|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47889999999999999999999888764

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.81  E-value=1.1e-08  Score=79.72  Aligned_cols=91  Identities=19%  Similarity=0.188  Sum_probs=80.2

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHHH--h--cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHH
Q 043188           28 NLFKAAAAGNLEPFKDMAREVIER--L--LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHV  103 (197)
Q Consensus        28 ~l~~a~~~g~~~~v~~Ll~~g~~~--~--~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~  103 (197)
                      -|.-|....++.++-.||.+|...  +  ..+-+|.|+||+||  +.|+..+.++|+.+    ++++-.+|..|+|+|.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~--~~gnVvl~QLLiWy----g~dv~~rda~g~t~l~y  700 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAA--RKGNVVLAQLLIWY----GVDVMARDAHGRTALFY  700 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhh--hhcchhHHHHHHHh----CccceecccCCchhhhh
Confidence            378889999999999999987543  3  34557899999999  99999999999997    99999999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCc
Q 043188          104 AAKFGHSDIVRVLVERAKLPQ  124 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~~~~~~  124 (197)
                      |-+.+..+|++.|+.+|+...
T Consensus       701 ar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  701 ARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             HhhcccHHHHHHHHHcCCCcc
Confidence            999999999999999987543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.79  E-value=1.8e-08  Score=77.31  Aligned_cols=80  Identities=21%  Similarity=0.223  Sum_probs=70.1

Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccc
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSA  178 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  178 (197)
                      -.||..++.++.+..--|+..|++.+.                 .--..|.||||+|++.|+...+++|+-.|+|+. ..
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~-----------------~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~-a~  196 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANF-----------------FHPEKGNTPLHVAAKAGQILQAELLAVYGADPG-AQ  196 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCC-----------------CCcccCCchhHHHHhccchhhhhHHhhccCCCC-CC
Confidence            358889999999877777888888776                 244579999999999999999999999999999 99


Q ss_pred             ccCCCcHHHHHHhcccCC
Q 043188          179 NNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       179 ~~~g~tpl~~A~~~~~~~  196 (197)
                      |..|.||+.+|...|+.+
T Consensus       197 d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  197 DSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             CCCCCcHHHHHHhcCchH
Confidence            999999999999988754

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.79  E-value=6.4e-09  Score=79.28  Aligned_cols=93  Identities=22%  Similarity=0.217  Sum_probs=81.1

Q ss_pred             ccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcC-CCCccchhhHHh
Q 043188           54 TAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERA-KLPQHENEELES  132 (197)
Q Consensus        54 ~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~  132 (197)
                      ++.++...+++|+  +.|....++-+.-.    +.+++++|.+.+|+||.|+.-|+.+++++|++.. .++..       
T Consensus       502 ~~~~~~i~~~~aa--~~GD~~alrRf~l~----g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~-------  568 (622)
T KOG0506|consen  502 RENDTVINVMYAA--KNGDLSALRRFALQ----GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDP-------  568 (622)
T ss_pred             ccccchhhhhhhh--hcCCHHHHHHHHHh----cccccccccccchhheeecccCceeHHHHHHHHHcCCCCh-------
Confidence            3456678899999  99999888766554    8999999999999999999999999999999864 44444       


Q ss_pred             hHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhc
Q 043188          133 RVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE  170 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  170 (197)
                                 .|.+|+|||.-|...++.+++++|-+.
T Consensus       569 -----------kDRw~rtPlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  569 -----------KDRWGRTPLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             -----------hhccCCCcchHhHhcCcHHHHHHHHHH
Confidence                       899999999999999999999999875

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.65  E-value=1.2e-07  Score=73.47  Aligned_cols=86  Identities=15%  Similarity=0.164  Sum_probs=51.0

Q ss_pred             HHHHHHHcCCcHHHHHHHHH--HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHH
Q 043188           28 NLFKAAAAGNLEPFKDMARE--VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAA  105 (197)
Q Consensus        28 ~l~~a~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~  105 (197)
                      ++|+++...+.+.+...+..  ...++..|..|.||||.|+  .-|+.++++.|+..    ++++..++..|++|||.|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV--~Lg~~~~a~~Ll~a----~Adv~~kN~~gWs~L~EAv   96 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAV--RLGHVEAARILLSA----GADVSIKNNEGWSPLHEAV   96 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHH--HhcCHHHHHHHHhc----CCCccccccccccHHHHHH
Confidence            46666666666555554332  2233355666666666666  66666666666554    5666666666666666666


Q ss_pred             HhCCHHHHHHHHHc
Q 043188          106 KFGHSDIVRVLVER  119 (197)
Q Consensus       106 ~~~~~~~~~~ll~~  119 (197)
                      ..|+..++..++.+
T Consensus        97 ~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   97 STGNEQIITEVLRH  110 (560)
T ss_pred             HcCCHHHHHHHHHH
Confidence            66666655555544

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.62  E-value=1e-07  Score=74.50  Aligned_cols=88  Identities=15%  Similarity=0.069  Sum_probs=68.1

Q ss_pred             hhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCC
Q 043188           69 QERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK  148 (197)
Q Consensus        69 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (197)
                      ...+...+-+|+.+-.....+-..-+.+|+|+||+|+..|+..+.++|+-+|.++..                  +|..|
T Consensus       633 ~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~------------------rda~g  694 (749)
T KOG0705|consen  633 AAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMA------------------RDAHG  694 (749)
T ss_pred             HHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcccee------------------cccCC
Confidence            334444444455442211222223345689999999999999999999999999887                  99999


Q ss_pred             chHHHHHHhcCCHHHHHHHhhcCCCc
Q 043188          149 NTALHEAVCHQNVDVVELLTKEDPDY  174 (197)
Q Consensus       149 ~t~l~~a~~~~~~~~~~~Ll~~g~~~  174 (197)
                      +|+|.+|-+.|..+|+..|+++|+..
T Consensus       695 ~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  695 RTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             chhhhhHhhcccHHHHHHHHHcCCCc
Confidence            99999999999999999999998864

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.61  E-value=9e-08  Score=46.95  Aligned_cols=30  Identities=43%  Similarity=0.689  Sum_probs=24.6

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCcc
Q 043188           96 KGDTPLHVAAKFGHSDIVRVLVERAKLPQH  125 (197)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~  125 (197)
                      +|.||||+|+..++.+++++|+++|+++..
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            477888888888888888888888887765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.54  E-value=2.8e-07  Score=75.13  Aligned_cols=136  Identities=13%  Similarity=0.066  Sum_probs=103.7

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHH----HHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCC
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREV----IERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAK   96 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g----~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   96 (197)
                      ..+...-.+..|+..|+...|+.+++..    .+++..|.-|+++|+.|+  ...+.++.++|++.    +...      
T Consensus        21 ~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai--~nenle~~eLLl~~----~~~~------   88 (822)
T KOG3609|consen   21 DLNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAI--DNENLELQELLLDT----SSEE------   88 (822)
T ss_pred             ccchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccc--ccccHHHHHHHhcC----cccc------
Confidence            3445555689999999999999999953    344578999999999999  99999999999884    3221      


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccc
Q 043188           97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQY  176 (197)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  176 (197)
                       ..+|.+|+..+..+.++.++.+.........        ....-...-.-+.||+.+|+...+.|+++.|+++|+.+.-
T Consensus        89 -gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~--------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   89 -GDALLLAIAVGSVPLVELLLVHFVDAPYLER--------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             -chHHHHHHHHHHHHHHHHHHhcccccchhcc--------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence             5689999999999999999987544322100        0001112334578999999999999999999999998763


Q ss_pred             c
Q 043188          177 S  177 (197)
Q Consensus       177 ~  177 (197)
                      .
T Consensus       160 P  160 (822)
T KOG3609|consen  160 P  160 (822)
T ss_pred             C
Confidence            3

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.48  E-value=2.9e-07  Score=71.37  Aligned_cols=61  Identities=11%  Similarity=0.017  Sum_probs=54.7

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHH
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI   82 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~   82 (197)
                      ..+..|.||||.|+.-|+.+.++.|+..|.++-.++..|++|||.|+  ..|+.+++.-++.+
T Consensus        50 ~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv--~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   50 RRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAV--STGNEQIITEVLRH  110 (560)
T ss_pred             cccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHH--HcCCHHHHHHHHHH
Confidence            35556699999999999999999999999988899999999999999  99999888777775

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.40  E-value=3.8e-07  Score=75.71  Aligned_cols=78  Identities=28%  Similarity=0.345  Sum_probs=46.5

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcc
Q 043188           96 KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQ  175 (197)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  175 (197)
                      .|.|++|.|+.++.....++|++.|++++.                  .|.-|++|+|.+...|+...+..|+++|++..
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~------------------~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~  716 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNA------------------LDSKGRTPLHHATASGHTSIACLLLKRGADPN  716 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchh------------------hhccCCCcchhhhhhcccchhhhhcccccccc
Confidence            355666666666666666666666655443                  55566666666666666666666666666655


Q ss_pred             cccccCCCcHHHHHHhc
Q 043188          176 YSANNYGKTPLYMAADY  192 (197)
Q Consensus       176 ~~~~~~g~tpl~~A~~~  192 (197)
                       +.+..|.+|+++|...
T Consensus       717 -a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  717 -AFDPDGKLPLDIAMEA  732 (785)
T ss_pred             -ccCccCcchhhHHhhh
Confidence             5566666666666443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.20  E-value=1.9e-06  Score=71.73  Aligned_cols=107  Identities=21%  Similarity=0.270  Sum_probs=87.3

Q ss_pred             CcHHHHHHHHHHHHHhc--ccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHH
Q 043188           37 NLEPFKDMAREVIERLL--TAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVR  114 (197)
Q Consensus        37 ~~~~v~~Ll~~g~~~~~--~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  114 (197)
                      +..++..=+..+++++.  .-..|.++||.|+  ..+......+|++.    +++++..+..|++|+|.+...|+...+.
T Consensus       633 ~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~--~~~~~~~~e~ll~~----ga~vn~~d~~g~~plh~~~~~g~~~~~~  706 (785)
T KOG0521|consen  633 CLPRIATALAHGCCENWPVVLCIGCSLLHVAV--GTGDSGAVELLLQN----GADVNALDSKGRTPLHHATASGHTSIAC  706 (785)
T ss_pred             chhhhhhhhcchhhhccchhhhcccchhhhhh--ccchHHHHHHHHhc----CCcchhhhccCCCcchhhhhhcccchhh
Confidence            34444444445666652  3457899999999  99998888888885    8999999999999999999999999999


Q ss_pred             HHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHH
Q 043188          115 VLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELL  167 (197)
Q Consensus       115 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  167 (197)
                      .+++++++..+                  .+..|.+|+++|....+.+.+-++
T Consensus       707 ~ll~~~a~~~a------------------~~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  707 LLLKRGADPNA------------------FDPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             hhccccccccc------------------cCccCcchhhHHhhhccccHHHHH
Confidence            99999999877                  899999999999877666655544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.16  E-value=9.9e-06  Score=60.78  Aligned_cols=76  Identities=12%  Similarity=0.088  Sum_probs=56.4

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHH
Q 043188           27 PNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAK  106 (197)
Q Consensus        27 ~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~  106 (197)
                      ..|++||+.|+++.|+.|++.|.++|..|.-..+||.+|+  -.||..++++|++.    |+ +-.++....---|+++.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAs--LcGHe~vvklLLen----GA-iC~rdtf~G~RC~YgaL  110 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLAS--LCGHEDVVKLLLEN----GA-ICSRDTFDGDRCHYGAL  110 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHH--HcCcHHHHHHHHHc----CC-cccccccCcchhhhhhh
Confidence            3578888888888888888888888888888888888888  88888888888884    55 34445443334456655


Q ss_pred             hCC
Q 043188          107 FGH  109 (197)
Q Consensus       107 ~~~  109 (197)
                      +.+
T Consensus       111 nd~  113 (516)
T KOG0511|consen  111 NDR  113 (516)
T ss_pred             hHH
Confidence            544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.14  E-value=2.2e-06  Score=64.14  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=56.3

Q ss_pred             CcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcc
Q 043188           59 NTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQH  125 (197)
Q Consensus        59 ~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~  125 (197)
                      .--|.+||  +.|..+.++.|++.    +.++|.+|.+..+||.+|+.-|+.+++++|+++|+....
T Consensus        37 f~elceac--R~GD~d~v~~LVet----gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r   97 (516)
T KOG0511|consen   37 FGELCEAC--RAGDVDRVRYLVET----GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR   97 (516)
T ss_pred             hHHHHHHh--hcccHHHHHHHHHh----CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence            45588999  99999999999996    999999999999999999999999999999999987654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.10  E-value=1.3e-05  Score=54.55  Aligned_cols=65  Identities=15%  Similarity=0.055  Sum_probs=36.9

Q ss_pred             HHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHc
Q 043188           50 ERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVER  119 (197)
Q Consensus        50 ~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~  119 (197)
                      +++.+|.-|+|+++.|+  ..|+.+.+.+|+..   ..+.+...+..+.+++.+|-..|..+++..|.+.
T Consensus         4 ~in~rD~fgWTalmcaa--~eg~~eavsyllgr---g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAA--MEGSNEAVSYLLGR---GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHh--hhcchhHHHHHhcc---CcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            34455556666666666  66666666665553   1144555555566666666666666666555554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.02  E-value=5.3e-06  Score=69.30  Aligned_cols=133  Identities=15%  Similarity=-0.009  Sum_probs=99.4

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHH-HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMARE-VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ...-.+.+.+|.++..+....++.+++- |......|.+|...+|.++   .++.+...++...   .+..++.+|..|+
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca---~lg~ewA~ll~~~---~~~ai~i~D~~G~  642 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA---ALGYEWAFLPISA---DGVAIDIRDRNGW  642 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh---hcCCceeEEEEee---cccccccccCCCC
Confidence            3455678899999999999999999985 5544567788888999855   4555554333221   3777999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhc
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE  170 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  170 (197)
                      ||||+|+..|+..++..|.+.++......            +..-....|.|+..+|...|+..+..+|-+.
T Consensus       643 tpL~wAa~~G~e~l~a~l~~lga~~~~~t------------dps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIELGADPGAVT------------DPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cccchHhhcCHHHHHHHHHHhcccccccc------------CCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999999998877655311            1122444688888888888888777777654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.91  E-value=1.9e-05  Score=66.13  Aligned_cols=119  Identities=16%  Similarity=0.051  Sum_probs=80.4

Q ss_pred             ccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHH-HcCCCCccchhhHHh
Q 043188           54 TAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLV-ERAKLPQHENEELES  132 (197)
Q Consensus        54 ~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll-~~~~~~~~~~~~~~~  132 (197)
                      ....|.+.+|.++  ..+..-.+..+++-   -+......+..+...+|. |..+..++..+++ ..+..+         
T Consensus       570 ~~~r~~lllhL~a--~~lyawLie~~~e~---~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai---------  634 (975)
T KOG0520|consen  570 VNFRDMLLLHLLA--ELLYAWLIEKVIEW---AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAI---------  634 (975)
T ss_pred             CCCcchHHHHHHH--HHhHHHHHHHHhcc---cccCchhhcccCCChhhH-hhhcCCceeEEEEeeccccc---------
Confidence            4456788889888  66665555555441   133333445667777777 4444444433333 344443         


Q ss_pred             hHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccc-----cCCCcHHHHHHhcccCC
Q 043188          133 RVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSAN-----NYGKTPLYMAADYRSSN  196 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-----~~g~tpl~~A~~~~~~~  196 (197)
                               +++|..|+||||+|..+|+..++.-|.+.|++.....|     ..|.|+..+|...|+..
T Consensus       635 ---------~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~g  694 (975)
T KOG0520|consen  635 ---------DIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKG  694 (975)
T ss_pred             ---------ccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccc
Confidence                     45999999999999999999999999988877653333     36888999888877754

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.89  E-value=1e-05  Score=55.06  Aligned_cols=54  Identities=15%  Similarity=0.013  Sum_probs=49.4

Q ss_pred             hhccCCCCchHHHHHHhcCCHHHHHHHhhcC-CCcccccccCCCcHHHHHHhcccC
Q 043188          141 IRMTNNEKNTALHEAVCHQNVDVVELLTKED-PDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       141 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                      ++.+|.+|+|++..|+..|+.+.+.||+.+| +.+. ..|..+.+++.+|-+.|..
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vg-v~d~ssldaaqlaek~g~~   59 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVG-VTDESSLDAAQLAEKGGAQ   59 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCccccc-ccccccchHHHHHHhcChH
Confidence            5669999999999999999999999999999 7777 9999999999999888754

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.80  E-value=3.9e-05  Score=63.07  Aligned_cols=113  Identities=19%  Similarity=0.132  Sum_probs=89.0

Q ss_pred             CCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH
Q 043188           58 KNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA  137 (197)
Q Consensus        58 g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  137 (197)
                      +.--+-.|+  +.|+...++..++......-++|++|.-|+++|++|+.+.+.+++++|++....               
T Consensus        25 ~e~~fL~a~--E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~---------------   87 (822)
T KOG3609|consen   25 GEKGFLLAH--ENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE---------------   87 (822)
T ss_pred             hhHHHHHHH--HcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc---------------
Confidence            344466788  999999998888764333456888999999999999999999999999997643               


Q ss_pred             HHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCc---------ccccccCCCcHHHHHHhcccCCC
Q 043188          138 RQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDY---------QYSANNYGKTPLYMAADYRSSNM  197 (197)
Q Consensus       138 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~---------~~~~~~~g~tpl~~A~~~~~~~i  197 (197)
                               . ..+|-+|+..|..+.++.++.+-...         +...-..+.||+..|+..++++|
T Consensus        88 ---------~-gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEi  146 (822)
T KOG3609|consen   88 ---------E-GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEI  146 (822)
T ss_pred             ---------c-chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHH
Confidence                     1 44888999999999999999763322         22344578899999999998874

>smart00248 ANK ankyrin repeats

Probab=97.37  E-value=0.0004  Score=31.72  Aligned_cols=29  Identities=34%  Similarity=0.477  Sum_probs=25.6

Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhcCCCcc
Q 043188          147 EKNTALHEAVCHQNVDVVELLTKEDPDYQ  175 (197)
Q Consensus       147 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  175 (197)
                      .+.||+|+|+..++.++++.|++.+.++.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            37899999999999999999999887653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.31  E-value=0.00034  Score=54.53  Aligned_cols=46  Identities=24%  Similarity=0.310  Sum_probs=41.4

Q ss_pred             cCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHH
Q 043188          144 TNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA  190 (197)
Q Consensus       144 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~  190 (197)
                      .+..-.|+||+|+.+|...++.+||+.|+|+. .+|..|.||..++.
T Consensus       426 ~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~-~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  426 NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS-TKDGAGRTPYSLSA  471 (591)
T ss_pred             cccccchHHHHHHhcchHHHHHHHHHhcCCch-hcccCCCCcccccc
Confidence            34456789999999999999999999999999 99999999998875

>smart00248 ANK ankyrin repeats

Probab=97.04  E-value=0.0017  Score=29.49  Aligned_cols=27  Identities=37%  Similarity=0.682  Sum_probs=21.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCC
Q 043188           97 GDTPLHVAAKFGHSDIVRVLVERAKLP  123 (197)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~ll~~~~~~  123 (197)
                      +.||+|+++..++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            568888888888888888888876643

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.75  E-value=0.002  Score=50.42  Aligned_cols=53  Identities=25%  Similarity=0.249  Sum_probs=44.0

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHh
Q 043188           95 AKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLT  168 (197)
Q Consensus        95 ~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  168 (197)
                      ...-|+||+|+..|..+++.+||+.++++..                  .|..|.||..++.   +.++-..++
T Consensus       428 ~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~------------------kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  428 YLTSTFLHYAAAQGARKCVKYFLEEGCDPST------------------KDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             cccchHHHHHHhcchHHHHHHHHHhcCCchh------------------cccCCCCcccccc---cHHHHHHHH
Confidence            3467999999999999999999999988876                  9999999999877   445444444

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.50  E-value=0.03  Score=39.79  Aligned_cols=124  Identities=13%  Similarity=0.118  Sum_probs=80.0

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHH
Q 043188           26 DPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAA  105 (197)
Q Consensus        26 ~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~  105 (197)
                      +--|-.|+..-+++.+..++....       .-.+++-+++  ..+..+++.+|+..+..-..++-... .+.--+.++.
T Consensus       154 ~isledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si--~~~K~dva~~lls~f~ft~~dv~~~~-~~~ydieY~L  223 (284)
T PF06128_consen  154 DISLEDAVKASNYEEISNLVTDKK-------DAHQAMWLSI--GNAKEDVALYLLSKFNFTKQDVASME-KELYDIEYLL  223 (284)
T ss_pred             cccHHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHh--cccHHHHHHHHHhhcceecchhhhcC-cchhhHHHHH
Confidence            334777888888877766665333       2356778888  77888888888775432222221111 1222334443


Q ss_pred             --HhCCHHHHHHHHHcCC-CCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCc
Q 043188          106 --KFGHSDIVRVLVERAK-LPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDY  174 (197)
Q Consensus       106 --~~~~~~~~~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  174 (197)
                        ...+..++++++.+|- +++.               .-..-..|.|.|.-|+.+++.+++.+|++.|+-.
T Consensus       224 S~h~a~~kvL~~Fi~~Glv~vN~---------------~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  224 SEHSASYKVLEYFINRGLVDVNK---------------KFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hhcCCcHHHHHHHHhccccccch---------------hhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence              3445678899998873 2222               1124457999999999999999999999999853

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.43  E-value=0.15  Score=36.40  Aligned_cols=93  Identities=9%  Similarity=0.089  Sum_probs=63.2

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHH----HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCccccc---CCCCCC
Q 043188           26 DPNLFKAAAAGNLEPFKDMARE----VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQ---VNAKGD   98 (197)
Q Consensus        26 ~~~l~~a~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~   98 (197)
                      -.+|..++.++..+++.+|++.    ..++ +.-..+.--+-|+.+....+..+++.++.   .+-.++|.   +-..|.
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv-~~~~~~~ydieY~LS~h~a~~kvL~~Fi~---~Glv~vN~~F~~~NSGd  255 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDV-ASMEKELYDIEYLLSEHSASYKVLEYFIN---RGLVDVNKKFQKVNSGD  255 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchh-hhcCcchhhHHHHHhhcCCcHHHHHHHHh---ccccccchhhhccCCcc
Confidence            4678999999999999999883    1122 12223444567776323334444444444   34444544   345799


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCC
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKL  122 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~  122 (197)
                      |.|--|+.+++.+++.+|+++|+.
T Consensus       256 tMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  256 TMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hHHHhHHhcCcHHHHHHHHHcCcc
Confidence            999999999999999999999985

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.03  E-value=0.097  Score=30.70  Aligned_cols=48  Identities=21%  Similarity=0.191  Sum_probs=39.0

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHH
Q 043188           26 DPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI   82 (197)
Q Consensus        26 ~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~   82 (197)
                      +..+..|+..|+.+.++.+++.+. +   +   ...+.+|+  ...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~-~---~---~~~l~~AI--~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK-P---D---NDCLEYAI--KSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc-c---H---HHHHHHHH--HHhhHHHHHHHHHh
Confidence            345899999999999999997552 2   1   46789999  99999999999884

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=91.04  E-value=3  Score=28.98  Aligned_cols=20  Identities=15%  Similarity=0.300  Sum_probs=15.9

Q ss_pred             hHHHHHHhcCCHHHHHHHhh
Q 043188          150 TALHEAVCHQNVDVVELLTK  169 (197)
Q Consensus       150 t~l~~a~~~~~~~~~~~Ll~  169 (197)
                      +.|..|+...+-.++.+++.
T Consensus       172 ~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  172 IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHhhHHHHHHHhhc
Confidence            68888888888888887764

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.83  E-value=0.73  Score=26.93  Aligned_cols=48  Identities=21%  Similarity=0.341  Sum_probs=39.7

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhc
Q 043188           98 DTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE  170 (197)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  170 (197)
                      ...+..|+..|+.++++..++.+.                      .   ....+..|+...+-++++||++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~----------------------~---~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK----------------------P---DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc----------------------c---HHHHHHHHHHHhhHHHHHHHHHh
Confidence            356789999999999999997542                      1   15579999999999999999965

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=86.49  E-value=8.9  Score=26.72  Aligned_cols=131  Identities=13%  Similarity=0.124  Sum_probs=80.1

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHH
Q 043188           27 PNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAK  106 (197)
Q Consensus        27 ~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~  106 (197)
                      -.|.-|++.+-+.++++.-....+.   -...++.+-.||  +..+.++++|+-+.+       .  -..-.+.+-.|..
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC--~~qkydiV~WI~qnL-------~--i~~~~~iFdIA~~  113 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELAC--EEQKYDIVKWIGQNL-------H--IYNPEDIFDIAFA  113 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHH--HHccccHHHHHhhcc-------C--CCCchhhhhhhhh
Confidence            3466677777777766665543321   124567888899  999999999986631       1  1223356667777


Q ss_pred             hCCHHHH----HHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCC
Q 043188          107 FGHSDIV----RVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYG  182 (197)
Q Consensus       107 ~~~~~~~----~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g  182 (197)
                      ..+.+..    .+++++......  .+              ....-..-|..|+..|....+--.++.|.++. .     
T Consensus       114 ~kDlsLyslGY~l~~~~~~~~~~--~d--------------~~~ll~~hl~~a~~kgll~F~letlkygg~~~-~-----  171 (192)
T PF03158_consen  114 KKDLSLYSLGYKLLFNRMMSEHN--ED--------------PTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-I-----  171 (192)
T ss_pred             ccchhHHHHHHHHHHhhcccccc--cC--------------HHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-H-----
Confidence            7776642    122222211100  00              01111234788999999999999999998876 2     


Q ss_pred             CcHHHHHHhccc
Q 043188          183 KTPLYMAADYRS  194 (197)
Q Consensus       183 ~tpl~~A~~~~~  194 (197)
                       ++|..|+.+++
T Consensus       172 -~vls~Av~ynh  182 (192)
T PF03158_consen  172 -IVLSQAVKYNH  182 (192)
T ss_pred             -HHHHHHHHhhH
Confidence             78999988765

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	197
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		7e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-06
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		3e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		3e-05
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-04
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-04
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		6e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-04
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 58/138 (42%), Gaps = 25/138 (18%)
Query: 53  LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDI 112
           L     +T LHI       E V      E  + C      +  KG TPLHVAAK+G   +
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 161
Query: 113 VRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDP 172
             +L+ER   P            A +  +        T LH AV H N+D+V+LL     
Sbjct: 162 AELLLERDAHPN----------AAGKNGL--------TPLHVAVHHNNLDIVKLLLPRGG 203
Query: 173 DYQYSANNYGKTPLYMAA 190
                A N G TPL++AA
Sbjct: 204 SPHSPAWN-GYTPLHIAA 220

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 19/96 (19%)
Query: 96  KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEA 155
           +G TPLH+AA  GH +IV VL++          ++ +R           + +  T LH A
Sbjct: 46  QGSTPLHLAAWIGHPEIVEVLLKHGA-------DVNAR-----------DTDGWTPLHLA 87
Query: 156 VCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
             + ++++VE+L K   D   + + YG TPL++AAD
Sbjct: 88  ADNGHLEIVEVLLKYGADVN-AQDAYGLTPLHLAAD 122

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 22/103 (21%)
Query: 92  QVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
            VNA+   GDTPLH+AA+ GH +IV VL++                GA    +  +    
Sbjct: 39  DVNAEDTYGDTPLHLAARVGHLEIVEVLLKN---------------GADVNALDFSG--- 80
Query: 149 NTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
           +T LH A    ++++VE+L K   D   + +  G TPL++AAD
Sbjct: 81  STPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAAD 122

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 17/113 (15%)
Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVERAKL----------------PQHENEELESRVGAA 137
           +A+G T LH+AAK GH ++V+ L+   ++                 ++++ +L   + + 
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 138 RQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
              I + +NE+N  LH A     VD+ E+L     D  ++ N +G +PL++AA
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAA 185

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 24/143 (16%)
Query: 58  KNTILHINIISQERENVSTKFVAEIL--EKC-PSLLLQVNAKGDTPLHVAAKFGHSDIVR 114
           + T LH+ +I+ + E      +AE L    C P L    + +G+TPLH+A + G    V 
Sbjct: 42  QQTPLHLAVITNQPE------IAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVG 92
Query: 115 VLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDY 174
           VL +    P                +++ TN   +T LH A  H  + +VELL     D 
Sbjct: 93  VLTQSCTTPH------------LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 140
Query: 175 QYSANNYGKTPLYMAADYRSSNM 197
                  G+T L++A D ++ ++
Sbjct: 141 NAQEPCNGRTALHLAVDLQNPDL 163

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 24/143 (16%)
Query: 58  KNTILHINIISQERENVSTKFVAEIL--EKC-PSLLLQVNAKGDTPLHVAAKFGHSDIVR 114
           + T LH+ +I+ + E      +AE L    C P L    + +G+TPLH+A + G    V 
Sbjct: 45  QQTPLHLAVITNQPE------IAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVG 95
Query: 115 VLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDY 174
           VL +    P                +++ TN   +T LH A  H  + +VELL     D 
Sbjct: 96  VLTQSCTTPH------------LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 143
Query: 175 QYSANNYGKTPLYMAADYRSSNM 197
                  G+T L++A D ++ ++
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDL 166

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 22/101 (21%)
Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNA+   G TPLH+AA FGH +IV VL++                      +   ++   
Sbjct: 40  VNARDFTGWTPLHLAAHFGHLEIVEVLLKNG------------------ADVNAKDSLGV 81
Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
           T LH A    ++++VE+L K   D   S +++G TPL++AA
Sbjct: 82  TPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAA 121

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 25/116 (21%)
Query: 79  VAEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG 135
           + E+L K  +    VNAK   G TPLH+AA+ GH +IV VL++                 
Sbjct: 50  IVEVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLK----------------- 89
Query: 136 AARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
            A   +   + +  T LH A    ++++VE+L K   D   + + +GKTP  +A D
Sbjct: 90  -AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAID 143

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           G TPLH+AAK GH +IV VL+               + GA    +   +N   T LH A 
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLL---------------KYGAD---VNAWDNYGATPLHLAA 88
Query: 157 CHQNVDVVELLTKEDPDYQYSANNY-GKTPLYMAA 190
            + ++++VE+L K   D   +A +Y G TPL++AA
Sbjct: 89  DNGHLEIVEVLLKHGAD--VNAKDYEGFTPLHLAA 121

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 25/114 (21%)
Query: 79  VAEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG 135
           + E+L K  +    VNAK   G TPLH+AA+ GH +IV VL++                 
Sbjct: 50  IVEVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLK----------------- 89
Query: 136 AARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA 189
            A   +   + +  T LH A    ++++VE+L K   D   + + +GKTP  +A
Sbjct: 90  -AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLA 141

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVERAKLP------------------QHENEELESRVG 135
           NA    PLH+A + GH  +V+ L++    P                   HE   L  + G
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG 175
Query: 136 AARQMIRMTNNEKNTALHEAVCHQNVDVVELL 167
           A+   I  +NN+ NTALHEAV  ++V VVELL
Sbjct: 176 AS---INASNNKGNTALHEAVIEKHVFVVELL 204

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 19/94 (20%)
Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           G TPLH+AA+ GH ++V++L+E                  A   +   +    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE------------------AGADVNAKDKNGRTPLHLAA 43
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
            + +++VV+LL +   D      N G+TPL++AA
Sbjct: 44  RNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAA 76

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 19/94 (20%)
Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           G TPLH+AA+ GH ++V++L+E                  A   +   +    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE------------------AGADVNAKDKNGRTPLHLAA 43
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
            + +++VV+LL +   D      N G+TPL++AA
Sbjct: 44  RNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAA 76

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 19/97 (19%)
Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
           ++ G TPLH AAK GH +IV++L+ +                     +   +++  T LH
Sbjct: 34  DSDGRTPLHYAAKEGHKEIVKLLISKG------------------ADVNAKDSDGRTPLH 75
Query: 154 EAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
            A    + ++V+LL  +  D   + ++ G+TPL+ AA
Sbjct: 76  YAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAA 111

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 25/135 (18%)
Query: 57  TKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVL 116
           +  T LH+  I    E      + E+L K  + +   +  GDTPLH+AA +GH +IV VL
Sbjct: 46  SGKTPLHLAAIKGHLE------IVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 117 VERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQY 176
           ++                      +  T+    T LH A    ++++VE+L K   D   
Sbjct: 100 LKNG------------------ADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN- 140
Query: 177 SANNYGKTPLYMAAD 191
           + + +GKT   ++ D
Sbjct: 141 AQDKFGKTAFDISID 155

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 19/94 (20%)
Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           G TPLH+AA FGH +IV VL++        +   +  +G              T LH A 
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGA-----DVNADDSLGV-------------TPLHLAA 88
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
              +++VVE+L K   D   + +N G TPL++AA
Sbjct: 89  DRGHLEVVEVLLKNGADVNANDHN-GFTPLHLAA 121

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 19/96 (19%)
Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           G TPLH+AA  GH +IV VL+               R GA    +   +    T LH A 
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLL---------------RNGAD---VNAVDTNGTTPLHLAA 76
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
              ++++VE+L K   D   + +  G TPLY+AA +
Sbjct: 77  SLGHLEIVEVLLKYGADVN-AKDATGITPLYLAAYW 111

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 25/96 (26%)
Query: 99  TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA---ARQMIRMTNNEKNTALHEA 155
           TPLH+AA  GH++IV VL++                GA   A+ M++M      TALH A
Sbjct: 69  TPLHMAASEGHANIVEVLLKH---------------GADVNAKDMLKM------TALHWA 107
Query: 156 VCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
             H + +VVELL K   D  ++ + + KT   ++ D
Sbjct: 108 TEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISID 142

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           G TPLH+AA  GH +IV VL++                      +  T N   T LH A 
Sbjct: 47  GHTPLHLAAMLGHLEIVEVLLKNG------------------ADVNATGNTGRTPLHLAA 88
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
              ++++VE+L K   D   + + +GKT   ++ D
Sbjct: 89  WADHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 122

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 19/102 (18%)
Query: 96  KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEA 155
           KG+TPLH+AA + H +IV VL++                GA    +   +N+ +T LH A
Sbjct: 46  KGNTPLHLAADYDHLEIVEVLLKH---------------GAD---VNAHDNDGSTPLHLA 87
Query: 156 VCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
               ++++VE+L K   D   + + +GKT   ++ D  + ++
Sbjct: 88  ALFGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 128

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 19/113 (16%)
Query: 79  VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
           + E+L K  + +  ++  G TPLH+AA  GH +IV VL++                GA  
Sbjct: 62  IVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKH---------------GAD- 105
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
             +   +   +T LH A    ++++VE+L K   D   + + +GKT   ++ D
Sbjct: 106 --VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 155

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 19/113 (16%)
Query: 79  VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
           + E+L K  + +  ++  G TPLH+AA  GH +IV VL++                GA  
Sbjct: 62  IVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKH---------------GAD- 105
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
             +   +   +T LH A    ++++VE+L K   D   + + +GKT   ++ D
Sbjct: 106 --VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 155

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           G TPLH+AA +GH +IV VL++                      +   +   +T LH A 
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNG------------------ADVNAYDTLGSTPLHLAA 88
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
              ++++VE+L K   D     +N G TPL++AA+
Sbjct: 89  HFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAAN 122

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 79  VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
           + E+L K  + +  V+  G TPL +AA FGH +IV VL++                GA  
Sbjct: 62  IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN---------------GAD- 105
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
             +   + E +T LH A    ++++VE+L K   D   + + +GKT   ++ D
Sbjct: 106 --VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISID 155

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 19/113 (16%)
Query: 79  VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
           + E+L K  + +   +  G TPLH+AA  GH +IV VL++                    
Sbjct: 62  IVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA----------------- 104
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
             +   +N+ +T LH A  + ++++VE+L K   D   + + +GKT   ++ D
Sbjct: 105 -DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 155

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 12/72 (16%)
Query: 52  LLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAK---GDTPLHVAAKFG 108
           +  +K  NT LH         N +    AE ++K  S    VNA+   G+TPLH+AAK G
Sbjct: 3   MWGSKDGNTPLH---------NAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG 53
Query: 109 HSDIVRVLVERA 120
           H++IV++L+ + 
Sbjct: 54  HAEIVKLLLAKG 65

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
           ++ G TPLH AA+ GH ++V++L+ +                     +   +++  T LH
Sbjct: 34  DSDGRTPLHHAAENGHKEVVKLLISKG------------------ADVNAKDSDGRTPLH 75
Query: 154 EAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
            A  + + +VV+LL  +  D   + ++ G+TPL+ AA+
Sbjct: 76  HAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAE 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	1e-13
2pnn_A	273	Transient receptor potential cation channel subfa	3e-11
2pnn_A	273	Transient receptor potential cation channel subfa	2e-10
2pnn_A	273	Transient receptor potential cation channel subfa	3e-07
2pnn_A	273	Transient receptor potential cation channel subfa	3e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
2etb_A	256	Transient receptor potential cation channel subfam	2e-13
2etb_A	256	Transient receptor potential cation channel subfam	5e-12
2etb_A	256	Transient receptor potential cation channel subfam	3e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	1e-12
2rfa_A	232	Transient receptor potential cation channel subfa	5e-12
2rfa_A	232	Transient receptor potential cation channel subfa	2e-11
2rfa_A	232	Transient receptor potential cation channel subfa	2e-07
2rfa_A	232	Transient receptor potential cation channel subfa	2e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 74.5 bits (184), Expect = 8e-17
 Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 33/153 (21%)

Query: 55  AKTKN--TILHINIISQERENVSTKFVAEILEKCPSLLLQVNAK---GDTPLHVAAKFGH 109
             T++  + LH+ II     +       E++ +    L  +N +     TPLH+A     
Sbjct: 3   QLTEDGDSFLHLAII-----HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 57

Query: 110 SDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK 169
            +I   L+                 G       + +   NT LH A     +  V +LT+
Sbjct: 58  PEIAEALLGA---------------GCD---PELRDFRGNTPLHLACEQGCLASVGVLTQ 99

Query: 170 EDPDYQYSA-----NNYGKTPLYMAADYRSSNM 197
                   +     N  G T L++A+ +    +
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 65.6 bits (161), Expect = 2e-13
 Identities = 43/167 (25%), Positives = 58/167 (34%), Gaps = 48/167 (28%)

Query: 47  EVIERLL------TAKTK--NTILHINIISQERENVSTKFVAEIL-EKC--PSLLLQVNA 95
           E+ E LL        +    NT LH+                 +L + C  P L   + A
Sbjct: 59  EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLA------SVGVLTQSCTTPHLHSILKA 112

Query: 96  K---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA---ARQMIRMTNNEKN 149
               G T LH+A+  G+  IV +LV                 GA   A+           
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSL---------------GADVNAQ-----EPCNGR 152

Query: 150 TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADYRS 194
           TALH AV  QN D+V LL K   D +        G +P  +     S
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGADVN---RVTYQGYSPYQLTWGRPS 196

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 23/109 (21%)

Query: 93  VNAK----GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
           VNA+    G T LH+A    + D+V +L++                GA    +     + 
Sbjct: 143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---------------GAD---VNRVTYQG 184

Query: 149 NTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
            +         +  + + L +   +         +       +   +  
Sbjct: 185 YSPYQLTWGRPSTRIQQQLGQLTLE-NLQMLPESEDEESYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 25/84 (29%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
           LLL+    VN     G +P  +      + I + L +                    + +
Sbjct: 169 LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL---------------TL--ENL 211

Query: 142 RMTNNEKNTALHEAVCHQNVDVVE 165
           +M    +          +  +  E
Sbjct: 212 QMLPESE-DEESYDTESEFTEFTE 234

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 70.9 bits (175), Expect = 5e-16
 Identities = 41/186 (22%), Positives = 61/186 (32%), Gaps = 70/186 (37%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLT-------AKTKN--TILHINIISQERENVSTKFV 79
           L  AAA G+++         + RLL        A  +   T L +               
Sbjct: 6   LSGAAARGDVQ--------EVRRLLHRELVHPDALNRFGKTALQV--------------- 42

Query: 80  A-----EILEKCPSLLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHEN 127
                  I       LL+     N +   G +P+H AA+ G  D ++VLVE         
Sbjct: 43  MMFGSTAIAL----ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH-------- 90

Query: 128 EELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE-DPDYQYSANNYGKTPL 186
                  GA    + + +      +H AV   +  VV  L  E D       +  G TPL
Sbjct: 91  -------GA---DVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH---RRDARGLTPL 137

Query: 187 YMAADY 192
            +A   
Sbjct: 138 ELALQR 143

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 59.3 bits (145), Expect = 8e-12
 Identities = 19/99 (19%), Positives = 29/99 (29%), Gaps = 23/99 (23%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEA 155
           +    L  AA  G    VR L+               R           N    TAL   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLH--------------RELVH---PDALNRFGKTALQVM 43

Query: 156 VCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
               +  +   L K+   P+     +  G +P++ AA  
Sbjct: 44  -MFGSTAIALELLKQGASPN---VQDTSGTSPVHDAART 78

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.7 bits (133), Expect = 5e-10
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 22/78 (28%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VN     G  P+H+A + GH+ +V  L   +                    +   +    
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLAAESD-------------------LHRRDARGL 134

Query: 150 TALHEAVCHQNVDVVELL 167
           T L  A+     D+V++L
Sbjct: 135 TPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.5 bits (96), Expect = 6e-05
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 6/36 (16%)

Query: 89  LLLQ---VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
            L     ++ +   G TPL +A + G  D+V +L  
Sbjct: 119 FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 72.2 bits (178), Expect = 1e-15
 Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 20/104 (19%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTAL 152
           V   GDT LH+A    H   +  L+                  A  + + + N+   TAL
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGF---------------SAGHEYLDLQNDLGQTAL 49

Query: 153 HEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADYRS 194
           H A        VE L            A   G T L++A   R+
Sbjct: 50  HLAAILGEASTVEKLYAAGAGVL---VAERGGHTALHLACRVRA 90

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 65.6 bits (161), Expect = 3e-13
 Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 31/114 (27%)

Query: 89  LLLQ----VNAK----GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQM 140
           LL      +N      G TPLH+A +   + ++ +L++                GA    
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA---------------GAD--- 217

Query: 141 IRMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
                    T L  A+   N  +  LL                  +P   +   
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP---EDGGDKLSPCSSSGSD 268

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 65.6 bits (161), Expect = 3e-13
 Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 31/108 (28%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA---ARQMIRMTNN 146
           + A+   G TPLHVA     +++VR+L +                GA             
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDA---------------GADLNKP-----EPT 190

Query: 147 EKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
              T LH AV  Q   V+ELL K   DP    +    G+TPL  A   
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPT---ARMYGGRTPLGSALLR 235

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 33/120 (27%)

Query: 92  QVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
            ++ +   G T LH+AA  G +  V  L                  GA    + +     
Sbjct: 37  YLDLQNDLGQTALHLAAILGEASTVEKLYAA---------------GAG---VLVAERGG 78

Query: 149 NTALHEAVCHQNVDVVELL-------TKEDPDYQYS-----ANNYGKTPLYMAADYRSSN 196
           +TALH A   +      +L        ++  D   +       +    P  + +     N
Sbjct: 79  HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 53.3 bits (129), Expect = 6e-09
 Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 21/82 (25%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
             A+   G TPL  A    +  + R+L                  GA          +K 
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAH---------------GAP---EPEDGGDKL 259

Query: 150 TALHEAVCHQNVDVVELLTKED 171
           +    +    + D  +   + D
Sbjct: 260 SPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 144 TNNEKNTALHEAVCHQNVDVVELLTKEDPDYQY--SANNYGKTPLYMAADYRSSNM 197
              + +TALH AV HQ+   ++ L      ++Y    N+ G+T L++AA    ++ 
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.1 bits (173), Expect = 1e-15
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 26/111 (23%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
            LL+     +      ++ L +A+  G++DIV +L+ER                     I
Sbjct: 54  FLLEWGADPHILAKERESALSLASTGGYTDIVGLLLER---------------DVD---I 95

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
            + +    T L  AV   +V  VE L     D   +  + G TP+ +A   
Sbjct: 96  NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVAL 145

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 69.0 bits (170), Expect = 3e-15
 Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 22/103 (21%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VN     G TPL  A+ FG  + VR L+E                GA      +   E+ 
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEW---------------GAD---PHILAKERE 70

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           +AL  A      D+V LL + D D     +  G TPL  A   
Sbjct: 71  SALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRG 112

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 64.7 bits (159), Expect = 1e-13
 Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 22/98 (22%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
               +H  A  G  D ++  + +               G    ++   +    T L  A 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRK---------------GD--NLVNKPDERGFTPLIWAS 44

Query: 157 CHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
               ++ V  L +   DP          ++ L +A+  
Sbjct: 45  AFGEIETVRFLLEWGADPH---ILAKERESALSLASTG 79

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.8 bits (154), Expect = 6e-13
 Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 26/104 (25%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
           LLL+    +N     G TPL  A +  H   V  L+ R               GA    +
Sbjct: 87  LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR---------------GAD---L 128

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTP 185
               +   T +  AV      V +++          +N     P
Sbjct: 129 TTEADSGYTPMDLAVALGYRKVQQVIENHILKLF-QSNLVPADP 171

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 69.0 bits (170), Expect = 1e-15
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 30/113 (26%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
            LLQ     N K   G TPLH A   GH  +V +L++                 A    +
Sbjct: 28  YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH---------------KAL---V 69

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
             T  + ++ LH+A  + +VD+V+LL       +   + N +G  P+    D 
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN---AVNIFGLRPVDYTDDE 119

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 54.7 bits (133), Expect = 3e-10
 Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 25/88 (28%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
           LLLQ    VN      D+PLH AAK GH DIV++L+                 GA+    
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY---------------GAS---R 102

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTK 169
              N      +          ++ L  K
Sbjct: 103 NAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.2 bits (103), Expect = 5e-06
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 144 TNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           TN+   T LH A    ++  VE L +   DP+     ++ G TPL+ A ++
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNH 53

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 69.8 bits (172), Expect = 2e-15
 Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 19/100 (19%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTAL 152
           V ++ +TP   AA+      +  L+E                      +   +    TAL
Sbjct: 40  VVSEYETPWWTAARKADEQALSQLLEDRD-------------------VDAVDENGRTAL 80

Query: 153 HEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
                  +   V LL +   D  +     G T L+MAA Y
Sbjct: 81  LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 63.3 bits (155), Expect = 6e-13
 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 40/118 (33%)

Query: 89  LLLQ---VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIR 142
            LL+   V+A    G T L   A  G    VR+L E                GA      
Sbjct: 62  QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA---------------GA------ 100

Query: 143 MTN-NEKN-----TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
             + + ++     TALH A  +   +VVE L +   D +     +  G T L +A + 
Sbjct: 101 --DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE---VEDERGLTALELAREI 153

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 57.5 bits (140), Expect = 8e-11
 Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 25/102 (24%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTA 151
           +   +G     +  K GHS                         A         +E  T 
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYI---------------AAD------VVSEYETP 47

Query: 152 LHEAVCHQNVDVVELLTKE-DPDYQYSANNYGKTPLYMAADY 192
              A    +   +  L ++ D D   + +  G+T L   A  
Sbjct: 48  WWTAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGL 86

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 22/79 (27%)

Query: 93  VNAK----GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
           ++ +    G T LH+AA +   ++V  LVE                GA    I + +   
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVEL---------------GAD---IEVEDERG 143

Query: 149 NTALHEAVCHQNVDVVELL 167
            TAL  A            
Sbjct: 144 LTALELAREILKTTPKGNP 162

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 68.6 bits (169), Expect = 2e-15
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 23/102 (22%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTAL 152
           + +  D     A K G  D V+  V +               G     +  T       L
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAK---------------GED---VNRTLEGGRKPL 44

Query: 153 HEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           H A     ++++E L  +  D +   + + +  TPL  A   
Sbjct: 45  HYAADCGQLEILEFLLLKGADIN---APDKHHITPLLSAVYE 83

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 66.7 bits (164), Expect = 9e-15
 Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 22/103 (21%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VN     G  PLH AA  G  +I+  L+                 GA    I   +    
Sbjct: 33  VNRTLEGGRKPLHYAADCGQLEILEFLLL---------------KGAD---INAPDKHHI 74

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           T L  AV   +V  V+LL  +  D +      G T      + 
Sbjct: 75  TPLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQ 116

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.2 bits (111), Expect = 3e-07
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 21/76 (27%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           +NA      TPL  A   GH   V++L+                 GA      +   +  
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLS---------------KGAD---KTVKGPDGL 107

Query: 150 TALHEAVCHQNVDVVE 165
           TA           +++
Sbjct: 108 TAFEATDNQAIKALLQ 123

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 69.4 bits (171), Expect = 2e-15
 Identities = 29/105 (27%), Positives = 36/105 (34%), Gaps = 26/105 (24%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           +N      DTPLH+AA  GH DIV+ L++                 A    I   N   N
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQY---------------KAD---INAVNEHGN 106

Query: 150 TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
             LH A       V E L             N YG+ P+  A   
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGALVS---ICNKYGEMPVDKAKAP 148

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 63.2 bits (155), Expect = 5e-13
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 22/98 (22%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
               +    + G++  VR+ ++                      +   ++   + LH A 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDN---------------TEND--LNQGDDHGFSPLHWAC 47

Query: 157 CHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
                 VVE+L       +     N    TPL++AA +
Sbjct: 48  REGRSAVVEMLIMRGARIN---VMNRGDDTPLHLAASH 82

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.6 bits (130), Expect = 2e-09
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 25/86 (29%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
            LLQ    +NA    G+ PLH A  +G   +   LV                 GA    +
Sbjct: 90  KLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN---------------GAL---V 131

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELL 167
            + N      + +A       + E  
Sbjct: 132 SICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 41.3 bits (98), Expect = 4e-05
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 6/51 (11%)

Query: 145 NNEKNTALHEAVCHQNVDVVELL---TKEDPDYQYSANNYGKTPLYMAADY 192
           + E    +       N   V L    T+ D +     +++G +PL+ A   
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLN---QGDDHGFSPLHWACRE 49

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 37.8 bits (89), Expect = 7e-04
 Identities = 4/29 (13%), Positives = 9/29 (31%), Gaps = 3/29 (10%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
           V+     G+ P+  A       +     +
Sbjct: 131 VSICNKYGEMPVDKAKAPLRELLRERAEK 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 69.0 bits (170), Expect = 3e-15
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 22/103 (21%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           +N     G TPL  AA  G   +V  L++                GA     ++    + 
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQN---------------GAD---PQLLGKGRE 70

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           +AL  A      D+V++L     D     +  G TPL  A   
Sbjct: 71  SALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHG 112

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 67.8 bits (167), Expect = 7e-15
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 26/111 (23%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
            LLQ            ++ L +A   G++DIV++L++                G     +
Sbjct: 54  FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC---------------GVD---V 95

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
              +    T L  AV   +V  V++L +   D      + G   + +A   
Sbjct: 96  NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVAL 145

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 64.7 bits (159), Expect = 1e-13
 Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 23/98 (23%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
               +H  A  G    +   +E+                     I  T+ E  T L  A 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQ---------------ENV---INHTDEEGFTPLMWAA 44

Query: 157 CHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
            H  + VVE L +   DP          ++ L +A   
Sbjct: 45  AHGQIAVVEFLLQNGADPQ---LLGKGRESALSLACSK 79

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 54.7 bits (133), Expect = 7e-10
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VN     G TPL  A    H   V++L+E                GA      +  +   
Sbjct: 95  VNEYDWNGGTPLLYAVHGNHVKCVKMLLES---------------GAD---PTIETDSGY 136

Query: 150 TALHEAVCHQNVDVVELL 167
            ++  AV      V +++
Sbjct: 137 NSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 40.8 bits (97), Expect = 6e-05
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVER-AKLPQHENE 128
              +   G   + +A   G+  + +V+     KL Q+  E
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.8 bits (177), Expect = 3e-15
 Identities = 28/175 (16%), Positives = 51/175 (29%), Gaps = 46/175 (26%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLTAKTKN--TILHINIISQERENVSTKFVAEILEKC 86
                     E        V E     K     T LH  +            + +     
Sbjct: 115 ESLLNECDERE--------VNEIGSHVKHCKGQTALHWCV----GLGPEYLEMIK----- 157

Query: 87  PSLLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQ 139
             +L+Q      AK    +TPL  A +F + + + ++++                     
Sbjct: 158 --ILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS----------SLR-- 203

Query: 140 MIRMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
            +   N + N+ LH A+     DV     +   D +     +N    PLY++   
Sbjct: 204 -LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN---MEDNEHTVPLYLSVRA 254

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 12/103 (11%), Positives = 34/103 (33%), Gaps = 9/103 (8%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VN +      PL+++ +     + + L+++  +   +     +  G     +        
Sbjct: 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN--GT---TVLPDRVVWL 291

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
             +  A      +V++LL ++  +    + N G          
Sbjct: 292 DFVPAAADPSKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKK 333

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
                      +HVAA+ G +D VR L+E                G +     + N    
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIET---------------GVS---PTIQNRFGC 54

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           TALH A     VD  + L      +   +  +G+ P+++A   
Sbjct: 55  TALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMA 94

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 38/113 (33%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
            L++       +   G T LH+A KFG  D  + L                  G      
Sbjct: 38  RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV---------------GE----- 77

Query: 142 RMTNNEKN--TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
              ++  +    +H AV     D+V  L +        A   G+ P  +  + 
Sbjct: 78  --VHSLWHGQKPIHLAVMANKTDLVVALVE-------GAKERGQMPESLLNEC 121

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.5 bits (132), Expect = 3e-09
 Identities = 7/101 (6%), Positives = 22/101 (21%), Gaps = 23/101 (22%)

Query: 91  LQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNT 150
           L         +  AA     +++++L E+                     +  + N    
Sbjct: 284 LPDRVVWLDFVPAAADPSKQEVLQLLQEK---------------LDE---VVRSLNTGAG 325

Query: 151 ALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMA 189
              +        V  +          +   +        ++
Sbjct: 326 GAVKRKKKAAPAVKRMKLAPSAPVRTR---SRSRARSSAVS 363

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 69.6 bits (171), Expect = 6e-15
 Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 19/100 (19%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTAL 152
           V ++ +TP   AA+      +  L+E                      +   +    TAL
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDRD-------------------VDAVDENGRTAL 81

Query: 153 HEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
                  +   V LL +   D  +     G T L+MAA Y
Sbjct: 82  LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 25/102 (24%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTA 151
           +   +G     +  K GHS                         A         +E  T 
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYI---------------AAD------VVSEYETP 48

Query: 152 LHEAVCHQNVDVVELLTKE-DPDYQYSANNYGKTPLYMAADY 192
              A    +   +  L ++ D D   + +  G+T L   A  
Sbjct: 49  WWTAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGL 87

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 52.6 bits (127), Expect = 8e-09
 Identities = 22/125 (17%), Positives = 35/125 (28%), Gaps = 43/125 (34%)

Query: 93  VNAK----GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
           ++ +    G T LH+AA +   ++V  LVE                GA    I + +   
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVEL---------------GAD---IEVEDERG 144

Query: 149 NTALHEAVCHQNVDVVELL--------------TKEDPDYQYSA-------NNYGKTPLY 187
            TAL  A                            E   ++Y+           GK   Y
Sbjct: 145 LTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEY 204

Query: 188 MAADY 192
           +    
Sbjct: 205 LVRWK 209

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 12/108 (11%), Positives = 30/108 (27%), Gaps = 16/108 (14%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHEN--EELESRVGAARQMIRM--TN 145
           +  +   G T L +A +   +      ++  +    E     LE +V    ++  +    
Sbjct: 137 IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKR 196

Query: 146 NEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNY---GKTPLYMAA 190
            +     +        D   +         + A +     +  L  A 
Sbjct: 197 GKGKDVEYLVRWKDGGDCEWVKGV------HVAEDVAKDYEDGLEYAV 238

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 69.2 bits (170), Expect = 6e-15
 Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 25/105 (23%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VN     G T L+ A   GH DIV +L               ++       +   N   +
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEMLF--------------TQPNIE---LNQQNKLGD 141

Query: 150 TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           TALH A      D+V+LL  +    D +   N   K    MA + 
Sbjct: 142 TALHAAAWKGYADIVQLLLAKGARTDLR---NIEKKLAFDMATNA 183

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.4 bits (155), Expect = 8e-13
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 22/101 (21%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           +N +   GDT LH AA  G++DIV++L+ +               GA      + N EK 
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAK---------------GAR---TDLRNIEKK 174

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
            A   A       +++     D   +  +N         + 
Sbjct: 175 LAFDMATNAACASLLKKKQGTDAV-RTLSNAEDYLDDEDSD 214

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.4 bits (155), Expect = 8e-13
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 24/102 (23%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
               D PLH AAK G+   +R  ++                      +   +   +TAL+
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLDN---------------RVG---VNGLDKAGSTALY 111

Query: 154 EAVCHQNVDVVELLTKE---DPDYQYSANNYGKTPLYMAADY 192
            A    + D+VE+L  +   + + Q   N  G T L+ AA  
Sbjct: 112 WACHGGHKDIVEMLFTQPNIELNQQ---NKLGDTALHAAAWK 150

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 13/106 (12%), Positives = 23/106 (21%), Gaps = 11/106 (10%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQ----------MIRMTNN 146
           G   +  A           L        +  +  ++                  +     
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAE 71

Query: 147 EKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
             +  LHEA    N+  +              +  G T LY A   
Sbjct: 72  SIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHG 116

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 67.8 bits (167), Expect = 7e-15
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 22/102 (21%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTAL 152
            N++ D  L  AAK G  + V+ L                   +     R     ++T L
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTV---------------QSVN--CRDIEGRQSTPL 46

Query: 153 HEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           H A  +  V VVE L +   D     + +  G  PL+ A  Y
Sbjct: 47  HFAAGYNRVSVVEYLLQHGADVH---AKDKGGLVPLHNACSY 85

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 65.5 bits (161), Expect = 6e-14
 Identities = 46/182 (25%), Positives = 68/182 (37%), Gaps = 58/182 (31%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLTAKTKN---------TILHINIISQERENVSTKFV 79
           L +AA AG++E         +++L T ++ N         T LH               V
Sbjct: 12  LLEAAKAGDVE--------TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS------V 57

Query: 80  AEILEKCPSLLLQ---VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESR 133
            E L      L     V+AK   G  PLH A  +GH ++  +LV+               
Sbjct: 58  VEYL------LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-------------- 97

Query: 134 VGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAAD 191
            GA    + + +  K T LHEA      ++ +LL +   DP      N  G TPL +  D
Sbjct: 98  -GAV---VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDLVKD 150

Query: 192 YR 193
             
Sbjct: 151 GD 152

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 48.2 bits (116), Expect = 2e-07
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 22/78 (28%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VN       TPLH AA  G  +I ++L++                GA        N + N
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQH---------------GAD---PTKKNRDGN 142

Query: 150 TALHEAVCHQNVDVVELL 167
           T L       + D+ +LL
Sbjct: 143 TPLDLV-KDGDTDIQDLL 159

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 68.2 bits (168), Expect = 1e-14
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 26/110 (23%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           +N +    D+P   A   G ++I+  +++                      +   N    
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLK---------------HATPD--LNKHNRYGG 107

Query: 150 TALHEAVCHQNVDVVELL---TKEDPDYQYSANNYGKTPLYMAADYRSSN 196
            AL  A    ++D V+LL    +ED D     N++G T L  A   R  N
Sbjct: 108 NALIPAAEKGHIDNVKLLLEDGREDID---FQNDFGYTALIEAVGLREGN 154

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 63.6 bits (156), Expect = 6e-13
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 21/103 (20%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           V+     G+TPL++A      +I + L++R               GA    I + N+  +
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDR---------------GA---DINLQNSISD 73

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           +    A      +++  + K         N YG   L  AA+ 
Sbjct: 74  SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.5 bits (148), Expect = 8e-12
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 26/108 (24%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           +N     G   L  AA+ GH D V++L+E                G     I   N+   
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLED---------------GRED--IDFQNDFGY 141

Query: 150 TALHEAVCHQN-----VDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           TAL EAV  +       D+V+LL +   D Q   +N G+T +  A   
Sbjct: 142 TALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQK 188

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.4 bits (145), Expect = 2e-11
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 19/99 (19%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
             +    L  A +     +  +L +                      +   + E NT L+
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDT---------------TYQ---VDEVDTEGNTPLN 44

Query: 154 EAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
            AV + ++++ + L     D     N+   +P   A   
Sbjct: 45  IAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLYAGAQ 82

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.7 bits (107), Expect = 3e-06
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 26/83 (31%)

Query: 93  VNAK---GDTPLHVAAKF-----GHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMT 144
           ++ +   G T L  A         + DIV++L+E                GA      + 
Sbjct: 133 IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN---------------GAD---QSIK 174

Query: 145 NNEKNTALHEAVCHQNVDVVELL 167
           +N   TA+  A      ++ ++L
Sbjct: 175 DNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 12/50 (24%), Positives = 15/50 (30%), Gaps = 1/50 (2%)

Query: 143 MTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           M   E    L  A       V E+L           +  G TPL +A   
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVD-EVDTEGNTPLNIAVHN 49

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.9 bits (97), Expect = 7e-05
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 39/120 (32%)

Query: 15  DNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLT-------AKTKN--TILHIN 65
           +  G  +       L  AA  G+++         ++ LL         +     T L   
Sbjct: 103 NRYGGNA-------LIPAAEKGHID--------NVKLLLEDGREDIDFQNDFGYTALIEA 147

Query: 66  IISQERENVSTKFVAEILEKCPSLLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
           +  +E   +      +I++    LL++     + K   G T +  A + G+++I ++L +
Sbjct: 148 VGLREGNQLYQ----DIVK----LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 66.1 bits (162), Expect = 1e-14
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 19/100 (19%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTAL 152
           + +     L  AA+ G  D VR+L+                 GA    +   +   +T L
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILMAN---------------GAD---VAAKDKNGSTPL 61

Query: 153 HEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           H A  + +++VV+LL +   D   + + +GKT   ++ D 
Sbjct: 62  HLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 26/91 (28%)

Query: 104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDV 163
            +   H      LV R               G+         ++    L EA      D 
Sbjct: 1   GSSHHHHHHSSGLVPR---------------GSH------MGSDLGKKLLEAARAGQDDE 39

Query: 164 VELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           V +L     D     + +  G TPL++AA  
Sbjct: 40  VRILMANGADVA---AKDKNGSTPLHLAARN 67

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 69.5 bits (171), Expect = 1e-14
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 19/101 (18%)

Query: 93  VNAK-GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTA 151
            N    + PLH AA    + IV++L+                 G         +++ NTA
Sbjct: 57  KNLLENEFPLHQAATLEDTKIVKILLFS---------------GLD---DSQFDDKGNTA 98

Query: 152 LHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           L+ AV   N+  V+L  K++    +      KT  Y A   
Sbjct: 99  LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML 139

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 61.4 bits (150), Expect = 8e-12
 Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 35/114 (30%)

Query: 89  LLLQ---VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIR 142
             L           G +  + A    +  +V  L+                 GA +    
Sbjct: 17  SFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNA---------------GALK---- 57

Query: 143 MTNNEKN--TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
              N       LH+A   ++  +V++L     D       ++ G T LY A D 
Sbjct: 58  ---NLLENEFPLHQAATLEDTKIVKILLFSGLDDS---QFDDKGNTALYYAVDS 105

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 11/99 (11%), Positives = 32/99 (32%), Gaps = 25/99 (25%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
            A   + +H+  K GH D++ +L++                          +      + 
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDY---------------MT--STNTNNSLLFIPDIK 200

Query: 154 EAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
            A+ ++++++++ L K D +          +        
Sbjct: 201 LAIDNKDIEMLQALFKYDIN--------IYSANLENVLL 231

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 8/71 (11%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 89  LLLQVNAKGDTPLHVAAKFGHSDIVRVLVER----------AKLPQHENEELESRVGAAR 138
            L + +    +          ++I ++++E+            L   +N +L+  +   +
Sbjct: 213 ALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNK 272

Query: 139 QMIRMTNNEKN 149
           ++  M  N   
Sbjct: 273 ELRLMYVNCVK 283

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 66.2 bits (163), Expect = 2e-14
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 26/105 (24%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNAK   G TPLH+AA+ GH ++V++L+E                GA    +   +    
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA---------------GAD---VNAKDKNGR 69

Query: 150 TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           T LH A  + +++VV+LL +   D +   + +  G+TPL++AA  
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARN 111

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 65.4 bits (161), Expect = 3e-14
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 23/98 (23%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           G TPLH+AA+ GH ++V++L+E                GA    +   +    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA---------------GAD---VNAKDKNGRTPLHLAA 43

Query: 157 CHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
            + +++VV+LL +   D +   + +  G+TPL++AA  
Sbjct: 44  RNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARN 78

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 52.7 bits (128), Expect = 2e-09
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNAK   G TPLH+AA+ GH ++V++L+E                GA    +   +    
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA---------------GAD---VNAKDKNGR 102

Query: 150 TALHEAVCHQNVDVVELL 167
           T LH A  + +++VV+LL
Sbjct: 103 TPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.9 bits (100), Expect = 1e-05
 Identities = 16/30 (53%), Positives = 23/30 (76%), Gaps = 3/30 (10%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVER 119
           VNAK   G TPLH+AA+ GH ++V++L+E 
Sbjct: 94  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 66.6 bits (164), Expect = 2e-14
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 26/105 (24%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
            +A+     TPLH+AA  GH++IV VL++                GA    +   +  K 
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKH---------------GAD---VNAKDMLKM 101

Query: 150 TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           TALH A  H + +VVELL K   D     + + + KT   ++ D 
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVH---TQSKFCKTAFDISIDN 143

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 57.8 bits (141), Expect = 4e-11
 Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 32/102 (31%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN----TAL 152
               L  AA+ G  D VR+L+                 GA            +    + L
Sbjct: 2   LGKKLLEAARAGQDDEVRILMAN---------------GA--------PFTTDWLGTSPL 38

Query: 153 HEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           H A  + +    E+L +     D   +     +TPL+MAA  
Sbjct: 39  HLAAQYGHFSTTEVLLRAGVSRD---ARTKVDRTPLHMAASE 77

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 52.0 bits (126), Expect = 4e-09
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNAK     T LH A +  H ++V +L++                GA    +   +    
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELLIKY---------------GAD---VHTQSKFCK 134

Query: 150 TALHEAVCHQNVDVVELL 167
           TA   ++ + N D+ E+L
Sbjct: 135 TAFDISIDNGNEDLAEIL 152

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 18/105 (17%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
                  GDTPLH+A   G+   V  LV      Q          G     + + NN + 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNL--FQQG---------GRE---LDIYNNLRQ 47

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRS 194
           T LH AV      VV LL         + + +G+T  ++A ++RS
Sbjct: 48  TPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAAHLACEHRS 91

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.6 bits (161), Expect = 2e-13
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 56/182 (30%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLT------AKTKN--TILHINIISQERENVSTKFVA 80
           L  A               V+  L+T      A  ++  T  H+    +           
Sbjct: 50  LHLAVITTLPS--------VVRLLVTAGASPMALDRHGQTAAHLACEHRSPT------CL 95

Query: 81  EIL-EKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA 136
             L +      L + A+   G T LHVA      + V++L+ER               GA
Sbjct: 96  RALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER---------------GA 140

Query: 137 ARQMIRMTN-NEKN-----TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
                   + +  +     + L  AV + ++ +V+LL +   +   +    G + L+ A+
Sbjct: 141 --------DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN-AQMYSGSSALHSAS 191

Query: 191 DY 192
             
Sbjct: 192 GR 193

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 64.4 bits (158), Expect = 4e-13
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 27/106 (25%)

Query: 93  VNAK----GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
           ++A     G +PL  A +     +V++L++                GA    +       
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQH---------------GAN---VNAQMYSG 183

Query: 149 NTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           ++ALH A     + +V  L +   D       N +  TPL +A   
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSS---LKNCHNDTPLMVARSR 226

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.5 bits (127), Expect = 8e-09
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNA+   G + LH A+  G   +VR LV                 GA      + N   +
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLVRS---------------GAD---SSLKNCHND 217

Query: 150 TALHEAVCHQNVDVVELL 167
           T L  A   + +D++   
Sbjct: 218 TPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 3/30 (10%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVER 119
            + K    DTPL VA      DI+R    R
Sbjct: 209 SSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.8 bits (172), Expect = 2e-14
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 26/111 (23%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
           LLL+     N     G TPLH+AA+ GH + V  L+E+                A+    
Sbjct: 98  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK---------------EAS---Q 139

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
                +  T LH A  +  V V ELL + D     +A   G TPL++A  +
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHH 189

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.4 bits (171), Expect = 2e-14
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 22/101 (21%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
                  G TPLHVA+  GH  IV+ L++R               GA+     ++N +  
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQR---------------GAS---PNVSNVKVE 48

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
           T LH A    + +V + L +       +     +TPL+ AA
Sbjct: 49  TPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAA 88

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 68.7 bits (169), Expect = 5e-14
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 26/111 (23%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
           +L++    V+A    G TPLHVA+ +G+  +V+ L++                 A    +
Sbjct: 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH---------------QAD---V 337

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
                   + LH+A    + D+V LL K         ++ G TPL +A   
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRL 387

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.9 bits (167), Expect = 8e-14
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 30/113 (26%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
            LLQ     NA+   G TPLH+AA+ GH+++V +L+ +                A     
Sbjct: 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK---------------QAN---G 271

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
            + N    T LH      +V V ++L K     D   +    G TPL++A+ Y
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD---ATTRMGYTPLHVASHY 321

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.9 bits (167), Expect = 8e-14
 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 30/111 (27%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
            LL+           G TPLHVAAK+G   +  +L+ER                A     
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER---------------DAH---P 172

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAA 190
                   T LH AV H N+D+V+LL      P    S    G TPL++AA
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH---SPAWNGYTPLHIAA 220

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.9 bits (167), Expect = 8e-14
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 30/113 (26%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
            LLQ     N      +TPLH+AA+ GH+++ + L++                 A    +
Sbjct: 32  NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN---------------KA---KV 73

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
                +  T LH A    + ++V+LL +   +P+    A   G TPL++AA  
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN---LATTAGHTPLHIAARE 123

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 59.0 bits (144), Expect = 7e-11
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 27/107 (25%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
            LLQ    VNAK   G +PLH AA+ GH+DIV +L++                GA+    
Sbjct: 329 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN---------------GAS---P 370

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTK--EDPDYQYSANNYGKTPL 186
              +++  T L  A     + V ++L    ++  +   ++ +  +  
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 417

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.4 bits (106), Expect = 8e-06
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 144 TNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADYRS 194
                 T LH A    ++ +V+ L +    P+    +N   +TPL+MAA    
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGASPN---VSNVKVETPLHMAARAGH 59

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 64.3 bits (158), Expect = 3e-14
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 23/98 (23%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           G TPLH+AA+ GH ++V++L+E                GA    +   +    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA---------------GAD---VNAKDKNGRTPLHLAA 43

Query: 157 CHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
            + +++VV+LL +   D +   + +  G+TPL++AA  
Sbjct: 44  RNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARN 78

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.7 bits (128), Expect = 7e-10
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNAK   G TPLH+AA+ GH ++V++L+E                GA    +   +    
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLE---------------AGAD---VNAKDKNGR 69

Query: 150 TALHEAVCHQNVDVVELL 167
           T LH A  + +++VV+LL
Sbjct: 70  TPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 41.6 bits (99), Expect = 9e-06
 Identities = 16/29 (55%), Positives = 23/29 (79%), Gaps = 3/29 (10%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
           VNAK   G TPLH+AA+ GH ++V++L+E
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 67.5 bits (166), Expect = 4e-14
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 21/104 (20%)

Query: 92  QVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
            +          +  A ++G  +  R LVE                G     +R  + E 
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEA---------------GYD---VRQPDKEN 42

Query: 149 NTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
            T LH A  +  +D+V+    +         +   TPL+ A   
Sbjct: 43  VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ 86

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.4 bits (158), Expect = 5e-13
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 27/106 (25%)

Query: 93  VNAK----GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
           V+        TPLH A + GH  +V  L++                GA      + + E 
Sbjct: 68  VDQLGGDLNSTPLHWATRQGHLSMVVQLMKY---------------GAD---PSLIDGEG 109

Query: 149 NTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
            + +H A    +  +V  L  +  D D     +  G TPL  AA  
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVD---MMDQNGMTPLMWAAYR 152

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.0 bits (157), Expect = 7e-13
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 22/104 (21%)

Query: 93  VNAK---GDTPLHVAAKFGHS-DIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
           V+     G TPL  AA   HS D  R+L+                      +       K
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF---------------NV--SVNLGDKYHK 177

Query: 149 NTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           NTALH AV   N  V+ LL +   +   + N  G++ L +A   
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQR 220

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 22/79 (27%)

Query: 93  VNAK----GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
           VN       +T LH A   G++ ++ +L+E                GA    +   N + 
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEA---------------GA---NVDAQNIKG 210

Query: 149 NTALHEAVCHQNVDVVELL 167
            +AL  A   +NV ++  L
Sbjct: 211 ESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
           V+A+   G++ L +A +  +  ++  L E
Sbjct: 203 VDAQNIKGESALDLAKQRKNVWMINHLQE 231

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 65.8 bits (162), Expect = 4e-14
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 22/103 (21%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNA    G TPL +AA FGH +IV VL++                GA    +   + E +
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKN---------------GAD---VNANDMEGH 114

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           T LH A    ++++VE+L K   D   + + +GKT   ++ D 
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDN 156

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 63.2 bits (155), Expect = 5e-13
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 26/105 (24%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNA+   G TPLH+AA  GH +IV VL++                GA    +   ++   
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKN---------------GAD---VNAVDHAGM 81

Query: 150 TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           T L  A    ++++VE+L K   D +   + +  G TPL++AA +
Sbjct: 82  TPLRLAALFGHLEIVEVLLKNGADVN---ANDMEGHTPLHLAAMF 123

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 63.2 bits (155), Expect = 5e-13
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 19/99 (19%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
            +     L  AA+ G  D VR+L+                 GA    +   +    T LH
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMA---------------NGA---DVNAEDASGWTPLH 52

Query: 154 EAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
            A  + ++++VE+L K   D   + ++ G TPL +AA +
Sbjct: 53  LAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALF 90

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 52.4 bits (127), Expect = 4e-09
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNA    G TPLH+AA FGH +IV VL++                GA    +   +    
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKN---------------GAD---VNAQDKFGK 147

Query: 150 TALHEAVCHQNVDVVELL 167
           TA   ++ + N D+ E+L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
           VNA+   G T   ++   G+ D+  +L +
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 67.5 bits (166), Expect = 8e-14
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 26/104 (25%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VN K     TPLHVAA+  H+D++ VL +                GA    +   ++   
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKH---------------GAK---MNALDSLGQ 281

Query: 150 TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAAD 191
           TALH A    ++    LL     DP      +  G T   M  +
Sbjct: 282 TALHRAALAGHLQTCRLLLSYGSDPS---IISLQGFTAAQMGNE 322

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 65.6 bits (161), Expect = 3e-13
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 26/105 (24%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
            +A      TPLH+AA +    IV++L++                GA    +   +    
Sbjct: 51  CHASDGRKSTPLHLAAGYNRVRIVQLLLQH---------------GAD---VHAKDKGGL 92

Query: 150 TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
             LH A  + + +V ELL K     +   + + +  TPL+ AA  
Sbjct: 93  VPLHNACSYGHYEVTELLLKHGACVN---AMDLWQFTPLHEAASK 134

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.2 bits (147), Expect = 3e-11
 Identities = 20/127 (15%), Positives = 33/127 (25%), Gaps = 41/127 (32%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNA      TPLH AA     ++  +L+                 GA      + N    
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSH---------------GAD---PTLVNCHGK 158

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSA--------------------NNYGKTPLYMA 189
           +A+  A   +  + +    K     Q +                         +T L+ A
Sbjct: 159 SAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCA 218

Query: 190 ADYRSSN 196
                  
Sbjct: 219 VASLHPK 225

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.8 bits (146), Expect = 4e-11
 Identities = 29/169 (17%), Positives = 53/169 (31%), Gaps = 44/169 (26%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS 88
           +  A      E         +         +++L     +   +      V + L     
Sbjct: 161 VDMAPTPELRE--------RLTYEFK---GHSLLQAAREADLAK------VKKTLALEII 203

Query: 89  LLLQVNAKGDTPLHVAAKFGHS---DIVRVLVERAKLPQHENEELESRVGAARQMIRMTN 145
              Q     +T LH A    H     +  +L+ +               GA    +   N
Sbjct: 204 NFKQPQ-SHETALHCAVASLHPKRKQVAELLLRK---------------GAN---VNEKN 244

Query: 146 NEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
            +  T LH A    + DV+E+L K     +   + ++ G+T L+ AA  
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVLHKHGAKMN---ALDSLGQTALHRAALA 290

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 57.5 bits (140), Expect = 3e-10
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 24/122 (19%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRV------G 135
           LLL            G + + +A      + +    +   L Q   E   ++V       
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE 201

Query: 136 AARQMIRMTNNEKNTALHEAVCH---QNVDVVELLTKE--DPDYQYSANNYGKTPLYMAA 190
                         TALH AV     +   V ELL ++  + + +   N    TPL++AA
Sbjct: 202 II---NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK---NKDFMTPLHVAA 255

Query: 191 DY 192
           + 
Sbjct: 256 ER 257

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 27/106 (25%)

Query: 93  VNAKGD---TPLHVAAKFGHSD-IVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
               G+     L  AA+ G+ + ++ +L                           ++  K
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTPL---------------NV---NCHASDGRK 58

Query: 149 NTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           +T LH A  +  V +V+LL +   D     + +  G  PL+ A  Y
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHGADVH---AKDKGGLVPLHNACSY 101

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 67.7 bits (166), Expect = 9e-14
 Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 49/194 (25%)

Query: 15  DNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLT---------AKTKN--TILH 63
           + +   +       L +AAA  +          ++  +L             +N  T L 
Sbjct: 196 NKSERSA-------LHQAAANRDFG--------MMVYMLNSTKLKGDIEELDRNGMTALM 240

Query: 64  INIISQERENVSTKFV-----AEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVE 118
           I   ++ R+ V++  +     A++     +       KG T LH AA+  +  IV+ LV 
Sbjct: 241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV- 299

Query: 119 RAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSA 178
                           G+        + +  T +  A     ++VV  L ++    + + 
Sbjct: 300 -------------GEKGSN---KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE-AV 342

Query: 179 NNYGKTPLYMAADY 192
           +    T   +A   
Sbjct: 343 DATDHTARQLAQAN 356

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 13/104 (12%)

Query: 93  VNAK--GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNT 150
           +       T LH  A    ++    L+       HE +E  +  GA    +   + ++NT
Sbjct: 119 IIDPRHNRTVLHWIASNSSAEKSEDLIV------HEAKECIAA-GAD---VNAMDCDENT 168

Query: 151 ALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRS 194
            L  AV  +   +V  L K   D     N   ++ L+ AA  R 
Sbjct: 169 PLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRD 211

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 32/181 (17%), Positives = 58/181 (32%), Gaps = 55/181 (30%)

Query: 32  AAAAGNLEPFKDMAREVIERLL-------TAKTKNTILHINIISQERENVSTKFVAEILE 84
             AAG+          + E +          +   T+LH    +   E       +E L 
Sbjct: 100 TEAAGSYA--------ITEPITRESVNIIDPRHNRTVLHWIASNSSAE------KSEDLI 145

Query: 85  KCPSLLL-----QVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA 136
              +         VNA     +TPL +A       +V  L++                GA
Sbjct: 146 VHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA---------------GA 190

Query: 137 ARQMIRMTNNEKNTALHEAVCHQNVDVVELL-----TKEDPDYQYSANNYGKTPLYMAAD 191
                 + N  + +ALH+A  +++  ++  +      K D +     +  G T L + A 
Sbjct: 191 ---DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE---ELDRNGMTALMIVAH 244

Query: 192 Y 192
            
Sbjct: 245 N 245

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 21/96 (21%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
              P       G+  +        ++P    E                  E    LH   
Sbjct: 61  SLYPNPQGYGNGNDFLGDFNHTNLQIP---TEP---------------EPESPIKLHTE- 101

Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
              +  + E +T+E  +       + +T L+  A  
Sbjct: 102 AAGSYAITEPITRESVNII--DPRHNRTVLHWIASN 135

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 21/84 (25%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
            + +   G TP+ +AA+ G  ++V  L++                GA+   +   +   +
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQ---------------QGAS---VEAVDATDH 347

Query: 150 TALHEAVCHQNVDVVELLTKEDPD 173
           TA   A  + + ++V++  +  P+
Sbjct: 348 TARQLAQANNHHNIVDIFDRCRPE 371

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 67.1 bits (165), Expect = 1e-13
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 22/103 (21%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           +N     G T LH A    + D+V+ LVE                GA    I   +NE  
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLVEN---------------GAN---INQPDNEGW 107

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
             LH A     +D+ E L  +      + N+ G TPL +A + 
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEE 149

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 26/105 (24%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
                  G T LHVAA  G+++++++L++                      + + + +  
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQA---------------RYD---VNIKDYDGW 233

Query: 150 TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           T LH A      +   +L +   D +   + N  G+T   +A + 
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCDME---AVNKVGQTAFDVADED 275

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 59.8 bits (146), Expect = 3e-11
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 24/116 (20%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQM------------ 140
           VN++GDTPL +A +    ++++  V R        +   +R    R M            
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNEVNR-----QGVDIEAARKEEERIMLRDARQWLNSGH 189

Query: 141 --IRMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
                      TALH A      +V++LL +   D + +   +  G TPL+ AA +
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK---DYDGWTPLHAAAHW 242

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 25/105 (23%)

Query: 92  QVNAKGD--TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           +   K D       A   G ++ V  L+ER               GA    I   N +  
Sbjct: 33  KTKVKFDDGAVFLAACSSGDTEEVLRLLER---------------GAD---INYANVDGL 74

Query: 150 TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           TALH+A    NVD+V+ L +   + +     +N G  PL+ AA  
Sbjct: 75  TALHQACIDDNVDMVKFLVENGANIN---QPDNEGWIPLHAAASC 116

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 25/92 (27%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
           LL+Q    VN K   G TPLH AA +G  +  R+LVE                      +
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN---------------LCD---M 258

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKEDPD 173
              N    TA   A       + EL  K++  
Sbjct: 259 EAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 64.7 bits (159), Expect = 1e-13
 Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 21/103 (20%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
            + K   G   +H AA+ G  D ++ L+E                 A    + + +NE N
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEF---------------QAD---VNIEDNEGN 104

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
             LH A    ++ VVE L K         N+ G T   +A  Y
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 57.8 bits (141), Expect = 4e-11
 Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 20/97 (20%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEA 155
                L  AA  G  + +  L++                      +   N    TAL   
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQN---------------NVN---VNAQNGFGRTALQVM 45

Query: 156 VCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
               N ++   L     +     +  G   ++ AA  
Sbjct: 46  KLG-NPEIARRLLLRGAN-PDLKDRTGFAVIHDAARA 80

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.1 bits (134), Expect = 4e-10
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 20/78 (25%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VN +   G+ PLH+AAK GH  +V  LV+                 A+   +   N++ +
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKH---------------TASN--VGHRNHKGD 138

Query: 150 TALHEAVCHQNVDVVELL 167
           TA   A  +   +VV L+
Sbjct: 139 TACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 38.5 bits (91), Expect = 3e-04
 Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
           V  +   GDT   +A  +G +++V ++  
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 37.7 bits (89), Expect = 6e-04
 Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 143 MTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
           M        L  A    +++ +  L + + +   + N +G+T L +  
Sbjct: 1   MAEPW-GNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMK 46

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 65.9 bits (162), Expect = 1e-13
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 26/106 (24%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           V  K      PLH AA  G   ++ +L                  G +   +   + +  
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGL---------------GKSA--VNWQDKQGW 175

Query: 150 TALHEAVCHQNVDVVELLTKE---DPDYQYSANNYGKTPLYMAADY 192
           T L  A+   + D   LL ++   + D     +N G     +A + 
Sbjct: 176 TPLFHALAEGHGDAAVLLVEKYGAEYD---LVDNKGAKAEDVALNE 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 65.5 bits (161), Expect = 2e-13
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 21/103 (20%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           +N     G T LH+A      ++ + L+E                GA+   +R+ +    
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIEN---------------GAS---VRIKDKFNQ 141

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
             LH A    ++ ++ELL           +  G TPL+ A   
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.0 bits (157), Expect = 5e-13
 Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 55/182 (30%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLT------AKTKN--TILHINIISQERENVSTKFVA 80
           L +A              +V E L +       K ++    LH ++  Q  E      + 
Sbjct: 6   LHQACMENEFF-------KVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE------IT 52

Query: 81  EILEKCPSLLLQ----VNAK------GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEEL 130
                    LL     VN        G TP H+A   G+ ++V+ L +R           
Sbjct: 53  S-------FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP---------- 95

Query: 131 ESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
              +      +    N+  T LH AV  +  +V + L +     +   + + + PL+ AA
Sbjct: 96  ---LKPD---LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAA 148

Query: 191 DY 192
             
Sbjct: 149 SV 150

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 61.7 bits (151), Expect = 4e-12
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 19/98 (19%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
            + PLH A        V+ L             L S+  +    +   + +    LH +V
Sbjct: 2   SNYPLHQACMENEFFKVQEL-------------LHSK-PSL---LLQKDQDGRIPLHWSV 44

Query: 157 CHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
             Q  ++   L  +  + +     ++ G TP ++A   
Sbjct: 45  SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV 82

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 46.7 bits (112), Expect = 8e-07
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 23/78 (29%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VN +   G TPL  A   GH D   +LV               + GA      + +N+  
Sbjct: 167 VNWQDKQGWTPLFHALAEGHGDAAVLLV--------------EKYGAE---YDLVDNKGA 209

Query: 150 TALHEAVCHQNVDVVELL 167
            A   A+   N  V +  
Sbjct: 210 KAEDVAL---NEQVKKFF 224

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 66.4 bits (163), Expect = 1e-13
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 27/106 (25%)

Query: 92  QVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
           QVN       TPL  A   G  D V +L++                GA+ Q      ++ 
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQH---------------GASVQ----PESDL 157

Query: 149 NTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
            + +HEA    +V+ V  L     + D      ++  TPLY+A + 
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNID---HKISHLGTPLYLACEN 200

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 65.2 bits (160), Expect = 4e-13
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 23/101 (22%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
                +P+H AA  GH   +R L+ +               G A   + +   +  + LH
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQ---------------GWA---VNIITADHVSPLH 97

Query: 154 EAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           EA    ++  V++L K     +          TPL+ A   
Sbjct: 98  EACLGGHLSCVKILLKHGAQVN---GVTADWHTPLFNACVS 135

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 64.1 bits (157), Expect = 1e-12
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 31/113 (27%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
            L+     ++ K     TPL++A +      V+ L+E                GA    +
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES---------------GAD---V 216

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
                +  + LH  V   + ++  LL     D     + N  GK P+ +    
Sbjct: 217 NQGKGQD-SPLHAVVRTASEELACLLMDFGADTQ---AKNAEGKRPVELVPPE 265

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 20/80 (25%)

Query: 92  QVNAK--GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
            VN     D+PLH   +    ++  +L++                GA     +  N E  
Sbjct: 215 DVNQGKGQDSPLHAVVRTASEELACLLMDF---------------GAD---TQAKNAEGK 256

Query: 150 TALHEAVCHQNVDVVELLTK 169
             +        +  + L  +
Sbjct: 257 RPVELVPPESPLAQLFLERE 276

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 18/105 (17%)

Query: 103 VAAKFGHSDIVRVLVER-----AKLPQHENEELESRVGAARQMIRM------TNNEKN-- 149
           + +   H      LV R     +   +    +     G                +  +  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 150 TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           + +HEA  H +   +  L  +    +          +PL+ A   
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVN---IITADHVSPLHEACLG 102

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 63.2 bits (155), Expect = 1e-13
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 20/101 (19%)

Query: 93  VNAK-GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTA 151
             +K G+TPLH AAK GH++ V+ L+ +               GA    +   + + NT 
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSK---------------GAD---VNARSKDGNTP 45

Query: 152 LHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           LH A  + + ++V+LL  +  D   + +  G TP ++A   
Sbjct: 46  LHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHLAKKN 85

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 62.0 bits (152), Expect = 4e-13
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 22/98 (22%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNA+   G+TPLH+AAK GH++IV++L+ +               GA    +   + + N
Sbjct: 35  VNARSKDGNTPLHLAAKNGHAEIVKLLLAK---------------GAD---VNARSKDGN 76

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLY 187
           T  H A  + + ++V+LL  +  D   + +       +
Sbjct: 77  TPEHLAKKNGHHEIVKLLDAKGADVN-ARSWGSSHHHH 113

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 25/104 (24%)

Query: 93  VNAK--GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNT 150
           V         L  ++  G  D+V+ ++                         + N+E  T
Sbjct: 31  VKFNPLPLALLLDSSLEGEFDLVQRIIYE---------------VDD---PSLPNDEGIT 72

Query: 151 ALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           ALH AVC  + ++V+ L +   + +   +A++ G TPL+ AA  
Sbjct: 73  ALHNAVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASC 113

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 19/101 (18%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNA    G TPLH AA   +  + + LVE                GAA   +  ++ +  
Sbjct: 96  VNAADSDGWTPLHCAASCNNVQVCKFLVE---------------SGAAVFAMTYSDMQTA 140

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
               E +        + L           N      L+   
Sbjct: 141 ADKCEEMEEGYTQCSQFLYGVQEK-MGIMNKGVIYALWDYE 180

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 24/98 (24%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           G   L    +          +                 G     ++         L ++ 
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAH---------------GMR---VKFNPLPL-ALLLDSS 45

Query: 157 CHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
                D+V+ +  E  DP      N+ G T L+ A   
Sbjct: 46  LEGEFDLVQRIIYEVDDPS---LPNDEGITALHNAVCA 80

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 36/118 (30%)

Query: 93  VNAK------GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNN 146
           V A                + G++   + L                 V      + + N 
Sbjct: 129 VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG---------------VQEK---MGIMNK 170

Query: 147 EKNTALHEAVCHQNV-------DVVELLTKEDPD---YQYS--ANNYGKTPLYMAADY 192
               AL +     +        D + ++ +ED D   + ++   +  G  P  +   Y
Sbjct: 171 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY 228

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 30/186 (16%)

Query: 29  LFKAAAAGNLEPFKD--------MAREVIERLLTAKTKNTILHINIISQERENVST-KFV 79
           +F A A  N +  +           R         +T  T L   +++       T   +
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 80  AEILEKCPSLLLQVNA-------KGDTPLHVAAKFGHSDIVRVLVER-AKLPQHENEELE 131
            ++  K  SL   VNA       KG T LH+A +  +  +V +LVE  A +    N +  
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 132 SRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE-----DPDYQYSANNYGKTPL 186
            +        R         L  A C   + +V+ L +      D   +   ++ G T L
Sbjct: 137 KKTKG-----RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR---DSVGNTVL 188

Query: 187 YMAADY 192
           +   + 
Sbjct: 189 HALVEV 194

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 30/111 (27%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           G+ PL +AA      IV+ L++                      I   ++  NT LH  V
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQN---------------SWQPADISARDSVGNTVLHALV 192

Query: 157 --CHQNVDVVELLTK-------------EDPDYQYSANNYGKTPLYMAADY 192
                 VD  + +T                   +   N  G TPL +AA  
Sbjct: 193 EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 15/117 (12%), Positives = 42/117 (35%), Gaps = 13/117 (11%)

Query: 79  VAEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG 135
           + + L +       ++A+   G+T LH   +   + +       +   +     L +++ 
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI--LILGAKLH 220

Query: 136 AARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
              ++  +TN +  T L  A     + V+  + + +         +     + AA +
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE--------IHEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 56/155 (36%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLL---------TAKTK--NTILHINIISQERENVSTK 77
           L  AA    L         +++ LL         +A+    NT+LH  +   +    +TK
Sbjct: 152 LSLAACTNQLA--------IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTK 203

Query: 78  FVAEI----------LEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHEN 127
           FV  +          L     L    N KG TPL +AA  G   ++  +++R        
Sbjct: 204 FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-------- 255

Query: 128 EELESRVGAARQMIRMTNNEKNTALHEAVC--HQN 160
                               +    H A    H +
Sbjct: 256 -----------------EIHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 23/117 (19%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
                  +  A    +   +  L+   +  +    + E +                T L 
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFK----------DPETGKTCLL 59

Query: 154 EAVCHQ---NVDVVELL-----TKEDPDYQYSAN-----NYGKTPLYMAADYRSSNM 197
           +A+ +      D + LL       +      +A+       G+T L++A + R+  +
Sbjct: 60  KAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.0 bits (162), Expect = 2e-13
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 13/108 (12%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVER-AKLPQHENEELESRVGAARQMIRMTNNEK 148
           VN     G T    AA +G    ++ L +R A +      + +                 
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED---------QERLRKGG 148

Query: 149 NTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN 196
            TAL +A    +V+V+++L  E      + +N G+  L  A      +
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.5 bits (153), Expect = 3e-12
 Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 20/100 (20%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVER-AKLPQHENEELESRVGAARQMIRMTNNEKNTAL 152
             + +  L  A +    D+V+ L+E  A +    N +                    T L
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANV----NFQ--------------EEEGGWTPL 43

Query: 153 HEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           H AV     D+VELL +   D        G TP  +AA  
Sbjct: 44  HNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIA 82

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.0 bits (144), Expect = 6e-11
 Identities = 33/202 (16%), Positives = 62/202 (30%), Gaps = 65/202 (32%)

Query: 15  DNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLT------AKTKN--TILHINI 66
             NG             AA AG+++        +++  L+             T      
Sbjct: 69  KKNGATP-------FLLAAIAGSVK--------LLKLFLSKGADVNECDFYGFTAFMEAA 113

Query: 67  ISQERENVSTKFVAEIL----------EKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVL 116
           +  + +        + L           K      ++   G T L  AA+ GH +++++L
Sbjct: 114 VYGKVK------ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

Query: 117 VERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVD----VVELLTKE-- 170
           +                +GA    +   +N    AL  A+   +      +  LL     
Sbjct: 168 L--------------DEMGAD---VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 171 DPDYQYSANNYGKTPLYMAADY 192
           D +        GKTPL +A + 
Sbjct: 211 DVN---VRGERGKTPLILAVEK 229

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 58.6 bits (143), Expect = 7e-11
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 27/110 (24%)

Query: 93  VNAK---GDTPLHVAAKFGHSD----IVRVLVERAKLPQHENEELESRVGAARQMIRMTN 145
           VNA    G   L  A           I  +L++                GA    + +  
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---------------GAD---VNVRG 216

Query: 146 NEKNTALHEAVCHQNVDVVE-LLTKEDPDYQYSANNYGKTPLYMAADYRS 194
               T L  AV  +++ +V+ LL +E  +     ++ GKT L +A + + 
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELKL 265

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 58.6 bits (143), Expect = 8e-11
 Identities = 39/182 (21%), Positives = 59/182 (32%), Gaps = 57/182 (31%)

Query: 2   NSVSNEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLT------- 54
           N      E+   L   G  +       L  AA  G++E        V++ LL        
Sbjct: 132 NLRRKTKEDQERLRKGGATA-------LMDAAEKGHVE--------VLKILLDEMGADVN 176

Query: 55  AKTKN--TILHINIISQERENVSTKFVAEILEKCPSLLLQ----VNAK---GDTPLHVAA 105
           A        L   +      +     V  I      LLL     VN +   G TPL +A 
Sbjct: 177 ACDNMGRNALIHAL-----LSSDDSDVEAITH----LLLDHGADVNVRGERGKTPLILAV 227

Query: 106 KFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVE 165
           +  H  +V+ L+               +       I  T+++  TAL  AV  +   + E
Sbjct: 228 EKKHLGLVQRLL--------------EQEHIE---INDTDSDGKTALLLAVELKLKKIAE 270

Query: 166 LL 167
           LL
Sbjct: 271 LL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 30/116 (25%)

Query: 15  DNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLT------AKTKN--TILHINI 66
           DN G  +       L  A  + +    +     +   LL        + +   T L + +
Sbjct: 179 DNMGRNA-------LIHALLSSDDSDVE----AITHLLLDHGADVNVRGERGKTPLILAV 227

Query: 67  ISQERENVSTKFVAEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVER 119
                E      V  +LE+      ++N     G T L +A +     I  +L +R
Sbjct: 228 -----EKKHLGLVQRLLEQEHI---EINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 65.6 bits (161), Expect = 2e-13
 Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 67/196 (34%)

Query: 15  DNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLT-------AKTKN--TILHIN 65
           DN G          L  A +A            V + L+        A+  +  T L + 
Sbjct: 87  DNMGRTP-------LHAAVSADAQG--------VFQILIRNRATDLDARMHDGTTPLIL- 130

Query: 66  IISQERENVSTKFVAEILEKCPSLLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
                    +   V  +LE     L+     VNA    G + LH AA   + D   VL++
Sbjct: 131 --------AARLAVEGMLE----DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178

Query: 119 RAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQY 176
                           GA      M NN + T L  A    + +  ++L     + D   
Sbjct: 179 N---------------GAN---KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT- 219

Query: 177 SANNYGKTPLYMAADY 192
             ++  + P  +A + 
Sbjct: 220 --DHMDRLPRDIAQER 233

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 27/110 (24%)

Query: 94  NAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNT 150
           N     G+T LH+AA++  SD  + L+E                 A      + +N   T
Sbjct: 51  NQTDRTGETALHLAARYSRSDAAKRLLEA---------------SAD---ANIQDNMGRT 92

Query: 151 ALHEAVCHQNVDVVELLTK---EDPDYQYSANNYGKTPLYMAADYRSSNM 197
            LH AV      V ++L +    D D   +  + G TPL +AA      M
Sbjct: 93  PLHAAVSADAQGVFQILIRNRATDLD---ARMHDGTTPLILAARLAVEGM 139

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.8 bits (120), Expect = 8e-08
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
            + +    +TPL +AA+ G  +  +VL++                 A      +T++   
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVLLDH---------------FAN---RDITDHMDR 224

Query: 150 TALHEAVCHQNVDVVELL 167
                A    + D+V LL
Sbjct: 225 LPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 41/103 (39%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VN +   G TPL +A+  G                                         
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGL-------------------------------------- 24

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
              +         V+     +        +  G+T L++AA Y
Sbjct: 25  ETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARY 67

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 31/192 (16%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 27  PNLFKAAAAGNLEPFKDMAREVIERLLTA--------KTKNTILHINIISQERENVST-K 77
             LF   + G  E    +   +                T  T L   +++ +    +   
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 78  FVAEILEKCPSLLLQVNA-------KGDTPLHVAAKFGHSDIVRVLVER-AKLPQHENEE 129
            + +I +   +    VNA       +G + LH+A +      V++LVE  A      +  
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA------DVH 117

Query: 130 LESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE-----DPDYQYSANNYGKT 184
           L +     ++            L  A C +  DVV  L +        +     ++ G T
Sbjct: 118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT---DSLGNT 174

Query: 185 PLYMAADYRSSN 196
            L+       ++
Sbjct: 175 VLHALVMIADNS 186

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 12/102 (11%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG------AARQMIRMTNNEKNT 150
           G+ PL +AA     D+V  L+E    P          +G           +   N+ +N+
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEA--TDSLGNTVLHALV---MIADNSPENS 190

Query: 151 ALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           AL   +    + +   L       +  +N+ G TPL +AA  
Sbjct: 191 ALVIHMYDGLLQMGARLCPTVQLEE-ISNHQGLTPLKLAAKE 231

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 21/108 (19%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERL-----LTAKTK--NTILHINIISQERENVSTKF--- 78
           L  AA     +    +   ++E       L A     NT+LH  ++  +    ++     
Sbjct: 140 LSLAACTKQWD----VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195

Query: 79  -------VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVER 119
                  +   L     L    N +G TPL +AAK G  +I R +++R
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 30/187 (16%)

Query: 29  LFKAAAAGNLEPFKDMAREVIER--------LLTAKTKNTILHINIISQER-ENVSTKFV 79
           LF   + G+ +  + +   ++               T  T L   +++     N +   +
Sbjct: 9   LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPIL 68

Query: 80  AEILEKCPSLLLQVNA-------KGDTPLHVAAKFGHSDIVRVLVER-AKLPQHENEELE 131
            +I EK  ++   +N+       +G T LH+A +      V +LVE+ A +         
Sbjct: 69  LDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF- 127

Query: 132 SRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE-----DPDYQYSANNYGKTPL 186
                  +            L  A C     +V  LT+      D   Q   ++ G T L
Sbjct: 128 ----FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ---DSRGNTVL 180

Query: 187 YMAADYR 193
           +      
Sbjct: 181 HALVAIA 187

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 58.6 bits (142), Expect = 8e-11
 Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 30/111 (27%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           G+ PL +AA      IV  L E                G  +  +R  ++  NT LH  V
Sbjct: 140 GELPLSLAACTNQPHIVHYLTEN---------------GHKQADLRRQDSRGNTVLHALV 184

Query: 157 CHQN---------VDVVELLTK------EDPDYQYSANNYGKTPLYMAADY 192
              +           + +LL         D + +   NN G +PL MAA  
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 10/71 (14%)

Query: 59  NTILHINII----SQERENVSTKFVAEILEKC------PSLLLQVNAKGDTPLHVAAKFG 108
           NT+LH  +     ++E     TK    +L KC       +L   +N  G +PL +AAK G
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236

Query: 109 HSDIVRVLVER 119
              I + ++ R
Sbjct: 237 KIGIFQHIIRR 247

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 11/95 (11%)

Query: 79  VAEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESR-- 133
           +   L +       +  +   G+T LH       +       E  K      + L  +  
Sbjct: 155 IVHYLTENGHKQADLRRQDSRGNTVLHALVAIADN-----TRENTKFVTKMYDLLLIKCA 209

Query: 134 -VGAARQMIRMTNNEKNTALHEAVCHQNVDVVELL 167
            +     +  + NN+  + L  A     + + + +
Sbjct: 210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 62.8 bits (154), Expect = 3e-13
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 28/107 (26%)

Query: 92  QVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
             NA    G  P+ V    G + +  +L+                 GA        +   
Sbjct: 37  DPNALNRFGRRPIQVMMM-GSAQVAELLLLH---------------GA---EPNCADPAT 77

Query: 149 NT-ALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
            T  +H+A     +D + +L +     D     + +G+ P+ +A + 
Sbjct: 78  LTRPVHDAAREGFLDTLVVLHRAGARLD---VCDAWGRLPVDLAEEQ 121

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 61.3 bits (150), Expect = 1e-12
 Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 28/106 (26%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           ++      D  L  AA  G  + VR L+E                GA        N    
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEA---------------GAD---PNALNRFGR 46

Query: 150 TALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKT-PLYMAADY 192
             +       +  V ELL     +P+    A+    T P++ AA  
Sbjct: 47  RPIQVM-MMGSAQVAELLLLHGAEPN---CADPATLTRPVHDAARE 88

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 26/87 (29%)

Query: 89  LLLQ----VNAK---GDT-PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQM 140
           LLL      N       T P+H AA+ G  D + VL                  GA    
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA---------------GAR--- 103

Query: 141 IRMTNNEKNTALHEAVCHQNVDVVELL 167
           + + +      +  A    + D+   L
Sbjct: 104 LDVCDAWGRLPVDLAEEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVER 119
           ++     G  P+ +A + GH DI R L   
Sbjct: 104 LDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 64.4 bits (158), Expect = 4e-13
 Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 67/196 (34%)

Query: 15  DNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLT-------AKTKN--TILHIN 65
           DN G          L  A +A            V + L+        A+  +  T L + 
Sbjct: 55  DNMGRTP-------LHAAVSADAQG--------VFQILIRNRATDLDARMHDGTTPLIL- 98

Query: 66  IISQERENVSTKFVAEILEKCPSLLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
                    +   V  +LE     L+     VNA    G + LH AA   + D   VL++
Sbjct: 99  --------AARLAVEGMLE----DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146

Query: 119 RAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQY 176
                           GA      M NN + T L  A    + +  ++L     + D   
Sbjct: 147 N---------------GAN---KDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--- 185

Query: 177 SANNYGKTPLYMAADY 192
             ++  + P  +A + 
Sbjct: 186 ITDHMDRLPRDIAQER 201

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 61.7 bits (151), Expect = 4e-12
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 21/107 (19%)

Query: 94  NAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNT 150
           N     G+T LH+AA++  SD  + L+E                 A      + +N   T
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEA---------------SAD---ANIQDNMGRT 60

Query: 151 ALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
            LH AV      V ++L +       +  + G TPL +AA      M
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM 107

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 51.3 bits (124), Expect = 2e-08
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
            + +    +TPL +AA+ G  +  +VL++                 A      +T++   
Sbjct: 151 KDMQNNREETPLFLAAREGSYETAKVLLDH---------------FAN---RDITDHMDR 192

Query: 150 TALHEAVCHQNVDVVELL 167
                A    + D+V LL
Sbjct: 193 LPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 38.5 bits (91), Expect = 4e-04
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 41/118 (34%)

Query: 15  DNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLT------AKTKN--TILHINI 66
           D+ G+ +       L  AAA  N++            LL        +     T L +  
Sbjct: 122 DDLGKSA-------LHWAAAVNNVD--------AAVVLLKNGANKDMQNNREETPLFLAA 166

Query: 67  ISQERENVSTKFVAEILEKCPSLLLQ---VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
                E       A++L      L      +        P  +A +  H DIVR+L E
Sbjct: 167 REGSYE------TAKVL------LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.4 bits (158), Expect = 4e-13
 Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 22/103 (21%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           +N +    +  LH AA  G  DI  +L+                       +   N   +
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAA---------------KCD---LHAVNIHGD 178

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           + LH A      D V L    D D     N  G+TPL  A+  
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDVT-LKNKEGETPLQCASLN 220

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.0 bits (157), Expect = 6e-13
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 21/103 (20%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           V+ K   G T LH+AAK GH ++V+ L+                 G     +   ++   
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSN---------------GQMD--VNCQDDGGW 112

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           T +  A  +++VD+V+LL  +  D     +N     L+ AA  
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENICLHWAAFS 154

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.7 bits (133), Expect = 1e-09
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 21/84 (25%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           ++A    GD+PLH+AA+    D V + + R                +    + + N E  
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSR---------------DSD---VTLKNKEGE 211

Query: 150 TALHEAVCHQNVDVVELLTKEDPD 173
           T L  A  +  V     ++K   D
Sbjct: 212 TPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 141 IRMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
            +M +  K + LH A    +VD+  +L +   + D   + +   +TPL  AA+ 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID---TCSEDQRTPLMEAAEN 54

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 30/116 (25%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVER-AKLPQHENEELESRVGAARQMIRMTNNEK 148
           V+ +   G+T LH+AA + + +   VL+E   +L                        E 
Sbjct: 30  VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTS--------------ELYEG 75

Query: 149 NTALHEAVCHQNVDVVELL------------TKEDPDYQYSANNYGKTPLYMAADY 192
            TALH AV +QNV++V  L                    ++   YG+ PL  AA  
Sbjct: 76  QTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 61.5 bits (150), Expect = 5e-12
 Identities = 36/175 (20%), Positives = 56/175 (32%), Gaps = 48/175 (27%)

Query: 47  EVIERLLTAKTKN--TILHINIISQERENVSTKFVAEIL-------------EKCPSLLL 91
           E++   +T++     T LHI +I+Q         +   L                     
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVN------LVRALLARGASVSARATGSVFHYRPH 115

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTA 151
            +   G+ PL  AA  G  +IVR+L+E                GA    IR  ++  NT 
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIEH---------------GAD---IRAQDSLGNTV 157

Query: 152 LHEAVCHQNVDVVELLTK---------EDPDYQYSANNYGKTPLYMAADYRSSNM 197
           LH  +   N      +                +   NN G TP  +A    +  M
Sbjct: 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 21/105 (20%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
            ++PL +AAK      +  L             L+   G     +        TALH A 
Sbjct: 3   WESPLLLAAKENDVQALSKL-------------LKFE-GCE---VHQRGAMGETALHIAA 45

Query: 157 CHQNVDVVELLTKEDPDYQYSANN----YGKTPLYMAADYRSSNM 197
            + N++   +L +  P+  +         G+T L++A   ++ N+
Sbjct: 46  LYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNL 90

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 17/81 (20%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA---ARQMIRMTNN 146
           + A+   G+T LH+     +      +     L  +               + +  + NN
Sbjct: 147 IRAQDSLGNTVLHILILQPNKTFACQMYN--LLLSY---------DGGDHLKSLELVPNN 195

Query: 147 EKNTALHEAVCHQNVDVVELL 167
           +  T    A    N+ + + L
Sbjct: 196 QGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 24/105 (22%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLT------AKTKN--TILHINIISQERENVSTKFV- 79
           L  AA  G+ E        ++  L+       A+     T+LHI I+   +      +  
Sbjct: 125 LSFAACVGSEE--------IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNL 176

Query: 80  -----AEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVER 119
                     K  SL L  N +G TP  +A   G+  + + L+++
Sbjct: 177 LLSYDGGDHLK--SLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 28/107 (26%)

Query: 92  QVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
             NA    G  P+ V    G + +  +L+                 GA        +   
Sbjct: 37  NPNAPNSYGRRPIQVMMM-GSARVAELLLLH---------------GA---EPNCADPAT 77

Query: 149 NT-ALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
            T  +H+A     +D + +L +     D     + +G+ P+ +A + 
Sbjct: 78  LTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEEL 121

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 58.6 bits (143), Expect = 2e-11
 Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 25/100 (25%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEA 155
                L  AA  G  + VR L+E                GA        N+     +   
Sbjct: 11  PSADWLATAAARGRVEEVRALLEA---------------GAN---PNAPNSYGRRPIQVM 52

Query: 156 VCHQNVDVVELLTKE--DPDYQYSANNYGKT-PLYMAADY 192
               +  V ELL     +P+    A+    T P++ AA  
Sbjct: 53  -MMGSARVAELLLLHGAEPN---CADPATLTRPVHDAARE 88

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 57.9 bits (141), Expect = 3e-11
 Identities = 20/110 (18%), Positives = 30/110 (27%), Gaps = 32/110 (29%)

Query: 89  LLLQ----VNAKGD----TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQM 140
           LLL      N         P+H AA+ G  D + VL                  GA    
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA---------------GAR--- 103

Query: 141 IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
           + + +      +  A    + DV   L         +    G     + A
Sbjct: 104 LDVRDAWGRLPVDLAEELGHRDVARYLR------AAAGGTRGSNHARIDA 147

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 10/84 (11%), Positives = 22/84 (26%), Gaps = 30/84 (35%)

Query: 89  LLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
           +L +    ++ +   G  P+ +A + GH D+ R L                         
Sbjct: 96  VLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA---------------AG----- 135

Query: 142 RMTNNEKNTALHEAVCHQNVDVVE 165
                  +            D+ +
Sbjct: 136 ---GTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 145 NNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAA 190
                  L  A     V+ V  L +   +P+   + N+YG+ P+ +  
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMM 53

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.1 bits (147), Expect = 3e-12
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 22/103 (21%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNAK   G TPL++A   GH +IV VL++                GA    +   +    
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKN---------------GAD---VNAVDAIGF 81

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           T LH A    ++++ E+L K   D   + + +GKT   ++   
Sbjct: 82  TPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGN 123

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 58.2 bits (142), Expect = 2e-11
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 19/99 (19%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
            +     L  AA+ G  D VR+L+                 GA    +   +    T L+
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMAN---------------GAD---VNAKDEYGLTPLY 52

Query: 154 EAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
            A  H ++++VE+L K   D   + +  G TPL++AA  
Sbjct: 53  LATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAAFI 90

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VNA    G TPLH+AA  GH +I  VL++                GA    +   +    
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKH---------------GAD---VNAQDKFGK 114

Query: 150 TALHEAVCHQNVDVVELL 167
           TA   ++ + N D+ E+L
Sbjct: 115 TAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 37.7 bits (89), Expect = 5e-04
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
           VNA+   G T   ++   G+ D+  +L +
Sbjct: 106 VNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.9 bits (149), Expect = 5e-12
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 22/103 (21%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VN K   G TPL  +  FG+S++   L+E                GA    +   N E  
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLLE---------------HGA---NVNDRNLEGE 135

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           T L  A  +   ++V+ L +   D   + +  G T    A  +
Sbjct: 136 TPLIVASKYGRSEIVKKLLELGADIS-ARDLTGLTAEASARIF 177

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 59.3 bits (145), Expect = 2e-11
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 22/105 (20%)

Query: 91  LQVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNE 147
              N +     TPL VA   G  + +  LVE                      +   + E
Sbjct: 26  FLRNYRDSYNRTPLMVACMLGMENAIDKLVEN---------------FDK---LEDKDIE 67

Query: 148 KNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
            +TAL  AV +  + + E L  +  +   + +  GKTPL  +  +
Sbjct: 68  GSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIF 111

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 51.2 bits (124), Expect = 2e-08
 Identities = 10/100 (10%), Positives = 26/100 (26%), Gaps = 25/100 (25%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTAL 152
           ++  G+    +  +   +  +  L    +                       ++   T L
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRN-YR-----------------------DSYNRTPL 39

Query: 153 HEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
             A      + ++ L +     +   +  G T L  A   
Sbjct: 40  MVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKN 78

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 49.3 bits (119), Expect = 7e-08
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 21/78 (26%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
           VN +   G+TPL VA+K+G S+IV+ L+E               +GA    I   +    
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLE---------------LGAD---ISARDLTGL 168

Query: 150 TALHEAVCHQNVDVVELL 167
           TA   A      +V+++ 
Sbjct: 169 TAEASARIFGRQEVIKIF 186

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 29/109 (26%)

Query: 92  QVNAK------GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTN 145
                          L  AA  G  ++V+  V+                          N
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVKE---------------MN---DPSQPN 51

Query: 146 NEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
            E  TALH A+C  N  +V+ L     + +   S +++G TPL+ AA  
Sbjct: 52  EEGITALHNAICGANYSIVDFLITAGANVN---SPDSHGWTPLHCAASC 97

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 61.1 bits (149), Expect = 7e-12
 Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 21/104 (20%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
            +     G T LH A    +  IV  L+                 GA    +   ++   
Sbjct: 47  PSQPNEEGITALHNAICGANYSIVDFLITA---------------GAN---VNSPDSHGW 88

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYR 193
           T LH A    +  +   L +       +  + G T       YR
Sbjct: 89  TPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYR 132

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 26/106 (24%)

Query: 93  VNAK----GDTPLHVAAKF--GHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNN 146
           + A     G T       +  G++D    L +               V  +   + + N+
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLAD---------------VEQS---MGLMNS 154

Query: 147 EKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
               AL +    +  D +     E        +   +T  + AA +
Sbjct: 155 GAVYALWDY-SAEFGDELSFREGESVT-VLRRDGPEETDWWWAALH 198

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 25/185 (13%), Positives = 48/185 (25%), Gaps = 51/185 (27%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLTA-------KTKNTILHINIISQERENVSTKFVAE 81
           +  AA  G  E            L            K+ IL+  +      N + +   +
Sbjct: 10  VSAAAMLGTYE--------DFLELFEKGYEDKESVLKSNILYDVL-----RNNNDEARYK 56

Query: 82  ILEKCPSLLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRV 134
           I       L+     + ++   G T      + G +DI           +          
Sbjct: 57  ISM----FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK--------- 103

Query: 135 GAARQMIRMTNNEKNTALHEAVCHQNVDVVE-------LLTKEDPDYQYSANNYGKTPLY 187
           GA    I          + + + +  VD  E       + ++         + +G T L 
Sbjct: 104 GAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKDKWGLTALE 159

Query: 188 MAADY 192
                
Sbjct: 160 FVKRC 164

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.0 bits (125), Expect = 8e-09
 Identities = 19/167 (11%), Positives = 48/167 (28%), Gaps = 30/167 (17%)

Query: 13  LLDNNGEISQSQI-DPNLFKAAAAGNLEPFKDMAREVIER--LLTAKTKN--TILHINII 67
           L +   E  +S +    L+      N E    ++  +I +   + ++TK   T+      
Sbjct: 25  LFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ 84

Query: 68  SQERENVSTKFVAEILEKCPSLLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERA 120
               +   T  + +       + L+    + A        +         D   ++    
Sbjct: 85  GGGNDITGTTELCK-------IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137

Query: 121 KLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELL 167
            +      +L  +           +    TAL      Q    ++++
Sbjct: 138 LIFSQSGLQLLIK-----------DKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 23/106 (21%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLL------TAKTKN--TILHINIISQERENVSTKFVA 80
            F     G  +       E+ +  L      TA  K    ++  NI +   +      + 
Sbjct: 79  FFPLFQGGGNDITGTT--ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLY 136

Query: 81  EILEKCPSLLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVER 119
           +++        Q    +  K   G T L    +      ++++ + 
Sbjct: 137 KLI------FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 29/106 (27%)

Query: 94  NAKGD-TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTAL 152
           NA  +   +  AA  G  +    L E+               G   +     +  K+  L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEK---------------GYEDK----ESVLKSNIL 42

Query: 153 HEAVCHQN----VDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
           ++ + + N      +   L  +  D     S    G T  +     
Sbjct: 43  YDVLRNNNDEARYKISMFLINKGADIK---SRTKEGTTLFFPLFQG 85

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 17/99 (17%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTAL 152
           + A+      +AA+ GH  ++  L E                 A  +++ M   E   A 
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLCEL----------------APTEIMAMIQAENYHAF 167

Query: 153 HEAVCHQNVDVVELLTKEDPDYQYS-ANNYGKTPLYMAA 190
             A  + ++ V+  L +  P    +            AA
Sbjct: 168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 206

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 26/194 (13%)

Query: 2   NSVSNEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLL--TAKTKN 59
           N   + IE          I     +       +A  L       +E I   L  T   + 
Sbjct: 3   NLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQ 62

Query: 60  TILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVER 119
               + +        + +  ++  +K          K +    VAA  G S  +  L   
Sbjct: 63  VRQLLCLYYAHYNRNAKQLWSDAHKK--------GIKSEVICFVAAITGCSSALDTL--- 111

Query: 120 AKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYS-A 178
                     L +       ++++   E   A   A  + ++ V+  L +  P    +  
Sbjct: 112 --------CLLLT-SDE---IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI 159

Query: 179 NNYGKTPLYMAADY 192
                    +AA+ 
Sbjct: 160 QAENYHAFRLAAEN 173

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 12/96 (12%), Positives = 23/96 (23%), Gaps = 14/96 (14%)

Query: 95  AKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHE 154
            +G   L    +     ++  +     +P  +         A          + N  L  
Sbjct: 276 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA-------LA---PTATIPGDANELLRL 325

Query: 155 AVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
           A+   N     LL         +  N      Y+  
Sbjct: 326 ALRLGNQGACALLLSIPSVLALTKAN----NYYINE 357

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 38.8 bits (90), Expect = 7e-04
 Identities = 17/134 (12%), Positives = 37/134 (27%), Gaps = 36/134 (26%)

Query: 93  VNAKGDTPLHVAA-KFGHSDIVRVLVE------RAKLPQHENEELESRVGAARQMIRMTN 145
           + A+       AA   GH +++  L++       A++ + E  E       AR + R+  
Sbjct: 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKE 253

Query: 146 NEKN----------------------TALHEAVCHQNVDVVELLT--KEDPDYQYSAN-- 179
                                       L   +   +  +++ +      P  +  A   
Sbjct: 254 MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA 313

Query: 180 ---NYGKTPLYMAA 190
                    L +A 
Sbjct: 314 TIPGDANELLRLAL 327

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 38.4 bits (89), Expect = 9e-04
 Identities = 6/75 (8%), Positives = 19/75 (25%), Gaps = 21/75 (28%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTAL 152
           +    +  L +A + G+     +L+                + +           K    
Sbjct: 315 IPGDANELLRLALRLGNQGACALLL---------------SIPSVL------ALTKANNY 353

Query: 153 HEAVCHQNVDVVELL 167
           +       +D+  + 
Sbjct: 354 YINETGGRLDLRAVA 368

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 23/98 (23%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
                ++A      ++   ++                  +       T+ +  TALH A 
Sbjct: 7   NIMICNLAYSGKLDELKERILAD---------------KSL---ATRTDQDSRTALHWAC 48

Query: 157 CHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
              + ++VE L +     +     ++ G +PL++AA  
Sbjct: 49  SAGHTEIVEFLLQLGVPVN---DKDDAGWSPLHIAASA 83

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 22/108 (20%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
                    T LH A   GH++IV  L++                G     +   ++   
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFLLQL---------------GVP---VNDKDDAGW 74

Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
           + LH A      ++V+ L  +      + N  G TPL+ AA      +
Sbjct: 75  SPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEI 121

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 25/164 (15%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS 88
           L  AA+AG  E  K +  +        +   T LH        E      +A +L +  +
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE------IAVMLLEGGA 130

Query: 89  LLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
                +    T +H AA  G+  +V +L+                         + + E 
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA------------------STNIQDTEG 172

Query: 149 NTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
           NT LH A   + V+  + L  +        N   KTPL +A   
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIY-IENKEEKTPLQVAKGG 215

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 25/202 (12%)

Query: 2   NSVSNEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTI 61
           + ++++   + L       S    D        A          +E+   L    +    
Sbjct: 32  HDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNS 91

Query: 62  LHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD----TPLHVAAKFGHSDIVRVLV 117
              +   Q++       + E+ +  P+  L +N   D    TPLH      + ++V+ LV
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 118 ERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQN---VDVVELLTKEDPDY 174
           +                G+        +N   + L +AV   N       E L       
Sbjct: 152 KH---------------GSN---RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 193

Query: 175 QYSANNYGKTPLYMAADYRSSN 196
               ++  +T L+         
Sbjct: 194 LILEDSMNRTILHHIIITSGMT 215

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 54/203 (26%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLT------AKTKN--TILHINIISQERENVSTKFVA 80
           L    +  NLE        +++ L+              + L   + S    N  +    
Sbjct: 135 LHWLTSIANLE--------LVKHLVKHGSNRLYGDNMGESCLVKAVKS--VNNYDSGTFE 184

Query: 81  EILEKCPSLLLQVNAKGDTPLHVAAKF----GHSDIVRVLVE------------------ 118
            +L+     L+  ++   T LH         G S   +  ++                  
Sbjct: 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244

Query: 119 ---------RAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK 169
                    +    +    E          M+   ++  +T L+ A    N+ +V+ L  
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 304

Query: 170 E--DPDYQYSANNYGKTPLYMAA 190
              DP     AN  G  P+   A
Sbjct: 305 YGADPF---IANKSGLRPVDFGA 324

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 25/92 (27%)

Query: 89  LLLQ-------VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
            ++Q         A G+T LH AA +   D +++L++                 A   ++
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG---------------RA---LV 252

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELLTKEDPD 173
              N    TAL  A    + +  ELL +    
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 59  NTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVE 118
           NT LH   +  + +        ++L K  +L+  VN  G+T L +A K  H +   +L +
Sbjct: 227 NTALHYAALYNQPD------CLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

Query: 119 --RAKLPQHENEELESRV 134
                     + +    +
Sbjct: 281 AQAGTFAFPLHVDYSWVI 298

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 59  NTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVE 118
            T LH+ + S +R ++    + + L +    L +   KG T LH      +++ +++L+ 
Sbjct: 170 ETALHLAVRSVDRTSLH---IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 119 RAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK 169
                            A    I + N    T L  A   ++    ELLT+
Sbjct: 227 G---------------KA---SIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 36/205 (17%), Positives = 64/205 (31%), Gaps = 50/205 (24%)

Query: 2   NSVSNEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAK----- 56
           N+  NEI E  L                        ++P         +  +TAK     
Sbjct: 78  NAGFNEIMECCLPSE-------------------DPVKPNPGSDMIARKDYITAKYMERR 118

Query: 57  --TKNTILHINIISQERENVSTKFVAEILEKCPS--------LLLQVNAKGDTPLHVAAK 106
              K        +    E V T+ +  +L+             L   +   +T LH+A +
Sbjct: 119 YARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVR 178

Query: 107 FGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVEL 166
                 + ++     L Q+               +     + +TALH      N + ++L
Sbjct: 179 SVDRTSLHIV---DFLVQNSGN------------LDKQTGKGSTALHYCCLTDNAECLKL 223

Query: 167 LTKEDPDYQYSANNYGKTPLYMAAD 191
           L +     +  AN  G+TPL +A  
Sbjct: 224 LLRGKASIE-IANESGETPLDIAKR 247

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 38/205 (18%), Positives = 63/205 (30%), Gaps = 46/205 (22%)

Query: 2   NSVSNEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAK--TKN 59
           N+  NE+ EA L  +                   G  +P  +         + AK     
Sbjct: 84  NTSFNEVMEAQLPSH-------------------GGPKPSAESDMGTRRDYIMAKYVEHR 124

Query: 60  TILHINIISQE-RENVSTKFVAEILE--------KCPSLLLQVNAKGDTPLHVAAKFGHS 110
                    Q     +  + +  +LE          P       A  +  LH+A K  + 
Sbjct: 125 FARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQ 184

Query: 111 DIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE 170
             +  LV+   + Q+         G     +     + NTALH A  +   D ++LL K 
Sbjct: 185 ASL-PLVDF--IIQN---------GG---HLDAKAADGNTALHYAALYNQPDCLKLLLKG 229

Query: 171 DPDYQYSANNYGKTPLYMAADYRSS 195
                 + N  G+T L +A      
Sbjct: 230 RAL-VGTVNEAGETALDIARKKHHK 253

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 18/76 (23%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTA 151
           Q ++ G  PLH A   GH+ +  + ++R               GA    +   ++E    
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKR---------------GA---DLGARDSEGRDP 304

Query: 152 LHEAVCHQNVDVVELL 167
           L  A+   N D+V LL
Sbjct: 305 LTIAMETANADIVTLL 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.95
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
1gp8_A	40	Protein (scaffolding protein); coat protein-bindin	81.5

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.5e-36  Score=205.41  Aligned_cols=146  Identities=25%  Similarity=0.369  Sum_probs=138.7

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHH
Q 043188           26 DPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAA  105 (197)
Q Consensus        26 ~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~  105 (197)
                      ...|+.|++.|+.++|+.|++.|.+++.+|..|.||||+|+  ..++.++++++++.    +.+++.++..|.||||+|+
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~--~~~~~~~~~~ll~~----gad~~~~d~~g~TpLh~A~   78 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAA--ENGHKEVVKLLISK----GADVNAKDSDGRTPLHHAA   78 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHhc----ccchhhhccCCCCHHHHHH
Confidence            35799999999999999999999999999999999999999  99999999999885    8999999999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcH
Q 043188          106 KFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTP  185 (197)
Q Consensus       106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tp  185 (197)
                      ..++.+++++|++.|++++.                  .|..|+||||+|+..|+.+++++|++.|++++ .+|..|+||
T Consensus        79 ~~g~~~~v~~Ll~~gadvn~------------------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~Tp  139 (169)
T 4gpm_A           79 ENGHKEVVKLLISKGADVNA------------------KDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTP  139 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred             HcCCHHHHHHHHHCcCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCH
Confidence            99999999999999999776                  89999999999999999999999999999998 999999999


Q ss_pred             HHHHHhcccCC
Q 043188          186 LYMAADYRSSN  196 (197)
Q Consensus       186 l~~A~~~~~~~  196 (197)
                      |++|+..|+.+
T Consensus       140 L~~A~~~g~~~  150 (169)
T 4gpm_A          140 LDLAREHGNEE  150 (169)
T ss_dssp             HHHHHHTTCHH
T ss_pred             HHHHHHcCCHH
Confidence            99999998754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1.2e-33  Score=197.26  Aligned_cols=152  Identities=18%  Similarity=0.096  Sum_probs=143.9

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t  103 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAV--KNNRLGIAEKLLSK----GSNVNTKDFSGKT  103 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHH----TCCTTCCCTTSCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHH--HcCCHHHHHHHHHC----CCCCCCCCCCCCc
Confidence            46778999999999999999999999999998888999999999999  99999999999997    8889999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccc
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSAN  179 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  179 (197)
                      |||+|+..++.+++++|++.|+++..                  .+..|.||||+|+..++.+++++|++.|++++ .++
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~  164 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGANVND------------------RNLEGETPLIVASKYGRSEIVKKLLELGADIS-ARD  164 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSC------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBC
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcC
Confidence            99999999999999999999998776                  89999999999999999999999999999998 999


Q ss_pred             cCCCcHHHHHHhcccCC
Q 043188          180 NYGKTPLYMAADYRSSN  196 (197)
Q Consensus       180 ~~g~tpl~~A~~~~~~~  196 (197)
                      ..|.||+++|+..|+.+
T Consensus       165 ~~g~t~l~~A~~~~~~~  181 (192)
T 2rfm_A          165 LTGLTAEASARIFGRQE  181 (192)
T ss_dssp             TTSCBHHHHHHHTTCHH
T ss_pred             CCCCCHHHHHHHhCcHH
Confidence            99999999999998754

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=8.5e-33  Score=188.80  Aligned_cols=148  Identities=16%  Similarity=0.113  Sum_probs=139.8

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHH
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHV  103 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~  103 (197)
                      .+.||||.|+..|+.+.+++|++.+.+++.++..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   75 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAA--AHGQIAVVEFLLQN----GADPQLLGKGRESALSL   75 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHH--HCCCHHHHHHHHHc----CCCCCCcCCCCCcHHHH
Confidence            4688999999999999999999999988889999999999999  99999999999986    88899999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCC
Q 043188          104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGK  183 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  183 (197)
                      |+..++.+++++|++.++++..                  .+..|.||||+|+..++.+++++|++.|++++ .++..|.
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~  136 (167)
T 3v31_A           76 ACSKGYTDIVKMLLDCGVDVNE------------------YDWNGGTPLLYAVHGNHVKCVKMLLESGADPT-IETDSGY  136 (167)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred             HHHcCCHHHHHHHHHCCCCCCc------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCC
Confidence            9999999999999999998776                  89999999999999999999999999999998 8999999


Q ss_pred             cHHHHHHhcccCC
Q 043188          184 TPLYMAADYRSSN  196 (197)
Q Consensus       184 tpl~~A~~~~~~~  196 (197)
                      ||+++|+..|+.+
T Consensus       137 t~l~~A~~~~~~~  149 (167)
T 3v31_A          137 NSMDLAVALGYRS  149 (167)
T ss_dssp             CHHHHHHHHTCHH
T ss_pred             CHHHHHHHcCcHH
Confidence            9999999998754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-33  Score=203.98  Aligned_cols=150  Identities=25%  Similarity=0.254  Sum_probs=141.2

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||+|+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus        81 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~--~~~~~~~~~~Ll~~----g~~~n~~d~~g~T  154 (269)
T 4b93_B           81 VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC--QQGHFQVVKCLLDS----NAKPNKKDLSGNT  154 (269)
T ss_dssp             CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHH--HHTCHHHHHHHHHT----TCCSCCCCTTCCC
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccccc--ccChHHHHHHHHHC----CCCCCCCCCCCCC
Confidence            45678999999999999999999999999999988999999999999  99999999999885    8899999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccc
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSAN  179 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  179 (197)
                      |||+|+..|+.+++++|++.|++++.                  .+..|.||||+|+..|+.+++++|++.|++++ .+|
T Consensus       155 pL~~A~~~g~~~~v~~Ll~~gadvn~------------------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~-~~d  215 (269)
T 4b93_B          155 PLIYACSGGHHELVALLLQHGASINA------------------SNNKGNTALHEAVIEKHVFVVELLLLHGASVQ-VLN  215 (269)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCCTTC------------------BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC-CCC
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCCc------------------cccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CcC
Confidence            99999999999999999999999776                  89999999999999999999999999999998 999


Q ss_pred             cCCCcHHHHHHhccc
Q 043188          180 NYGKTPLYMAADYRS  194 (197)
Q Consensus       180 ~~g~tpl~~A~~~~~  194 (197)
                      ..|+||||+|++++.
T Consensus       216 ~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          216 KRQRTAVDCAEQNSK  230 (269)
T ss_dssp             TTSCCSGGGSCTTCH
T ss_pred             CCCCCHHHHHHhCCc
Confidence            999999999987664

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1.4e-32  Score=188.24  Aligned_cols=152  Identities=24%  Similarity=0.312  Sum_probs=140.1

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ...+.+.++|++|+..|+.+++++|++.|.+++..+..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.|
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t   82 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAA--FNGHLEIVEVLLKN----GADVNAVDHAGMT   82 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCccCCCCCC
Confidence            34556678999999999999999999999999989999999999999  99999999999986    8889999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccc
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSAN  179 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  179 (197)
                      |||+|+..++.+++++|++.++++..                  .+..|.||||+|+..++.+++++|++.|++++ .+|
T Consensus        83 ~L~~A~~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~  143 (169)
T 2y1l_E           83 PLRLAALFGHLEIVEVLLKNGADVNA------------------NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQD  143 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcC
Confidence            99999999999999999999998776                  88999999999999999999999999999998 899


Q ss_pred             cCCCcHHHHHHhcccCC
Q 043188          180 NYGKTPLYMAADYRSSN  196 (197)
Q Consensus       180 ~~g~tpl~~A~~~~~~~  196 (197)
                      ..|.||+++|+..|+.+
T Consensus       144 ~~g~t~l~~A~~~~~~~  160 (169)
T 2y1l_E          144 KFGKTAFDISIDNGNED  160 (169)
T ss_dssp             TTSCCHHHHHHHTTCHH
T ss_pred             CCCCCHHHHHHHhCCHH
Confidence            99999999999998754

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.98  E-value=1.8e-32  Score=184.69  Aligned_cols=146  Identities=27%  Similarity=0.276  Sum_probs=136.0

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHH
Q 043188           25 IDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVA  104 (197)
Q Consensus        25 ~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a  104 (197)
                      ..++|+.|+..|+.+.+++|++.|.+++ .+..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   74 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAA--QYGHFSTTEVLLRA----GVSRDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHH--HHTCHHHHHHHHTT----TCCTTCCCTTCCCHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHH
Confidence            4578999999999999999999998654 5778999999999  99999999999885    888999999999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCc
Q 043188          105 AKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKT  184 (197)
Q Consensus       105 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t  184 (197)
                      +..++.+++++|++.|+++..                  .+..|.||||+|+..++.+++++|++.|++++ .++..|.|
T Consensus        75 ~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t  135 (153)
T 1awc_B           75 ASEGHANIVEVLLKHGADVNA------------------KDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKT  135 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCC
T ss_pred             HHcChHHHHHHHHHcCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCC
Confidence            999999999999999998776                  89999999999999999999999999999998 89999999


Q ss_pred             HHHHHHhcccCC
Q 043188          185 PLYMAADYRSSN  196 (197)
Q Consensus       185 pl~~A~~~~~~~  196 (197)
                      |+++|+..|+.+
T Consensus       136 ~l~~A~~~~~~~  147 (153)
T 1awc_B          136 AFDISIDNGNED  147 (153)
T ss_dssp             HHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHH
Confidence            999999998754

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=5.1e-32  Score=185.78  Aligned_cols=147  Identities=22%  Similarity=0.179  Sum_probs=136.2

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHH-HhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHH
Q 043188           25 IDPNLFKAAAAGNLEPFKDMAREVIE-RLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHV  103 (197)
Q Consensus        25 ~~~~l~~a~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~  103 (197)
                      +.++|+.|+..|+.+.++.|++.+.+ ++..+..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   75 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWAS--AFGEIETVRFLLEW----GADPHILAKERESALSL   75 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHH--HTTCHHHHHHHHHH----TCCTTCCCTTCCCHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCchhhcccCCCHHHH
Confidence            45789999999999999999999876 5678889999999999  99999999999997    88899999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCC
Q 043188          104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGK  183 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  183 (197)
                      |+..++.+++++|++.+.++..                  .+..|.||||+|+..++.+++++|++.|++++ .++..|.
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~  136 (172)
T 3v30_A           76 ASTGGYTDIVGLLLERDVDINI------------------YDWNGGTPLLYAVRGNHVKCVEALLARGADLT-TEADSGY  136 (172)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred             HHHCCCHHHHHHHHHcCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCC
Confidence            9999999999999999998776                  88999999999999999999999999999998 8999999


Q ss_pred             cHHHHHHhcccCC
Q 043188          184 TPLYMAADYRSSN  196 (197)
Q Consensus       184 tpl~~A~~~~~~~  196 (197)
                      |||++|+..|+.+
T Consensus       137 t~l~~A~~~~~~~  149 (172)
T 3v30_A          137 TPMDLAVALGYRK  149 (172)
T ss_dssp             CHHHHHHHHTCHH
T ss_pred             CHHHHHHHhCcHH
Confidence            9999999998754

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=2.4e-32  Score=185.55  Aligned_cols=148  Identities=22%  Similarity=0.175  Sum_probs=137.5

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHH
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHV  103 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~  103 (197)
                      ...++|+.|+..|+.+.+++|++.|.+++..+..|.||||+|+  . ++.+++++|++.    +.+++.++..|.||||+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~-~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   76 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK--L-GNPEIARRLLLR----GANPDLKDRTGFAVIHD   76 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC--S-SCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHH--c-CcHHHHHHHHHc----CCCCCCCCCCCCCHHHH
Confidence            4568999999999999999999999999889999999999999  8 999999999986    88899999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCC
Q 043188          104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGK  183 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  183 (197)
                      |+..++.+++++|++.+.+++.                  .+..|.||||+|+..++.+++++|++.|++..+.++..|.
T Consensus        77 A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~  138 (162)
T 1ihb_A           77 AARAGFLDTLQTLLEFQADVNI------------------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD  138 (162)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCC
Confidence            9999999999999999998776                  8999999999999999999999999999986448999999


Q ss_pred             cHHHHHHhcccCC
Q 043188          184 TPLYMAADYRSSN  196 (197)
Q Consensus       184 tpl~~A~~~~~~~  196 (197)
                      |||++|+..|+.+
T Consensus       139 t~l~~A~~~~~~~  151 (162)
T 1ihb_A          139 TACDLARLYGRNE  151 (162)
T ss_dssp             CHHHHHHHTTCHH
T ss_pred             cHHHHHHHcCCHH
Confidence            9999999998754

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=2e-31  Score=187.02  Aligned_cols=153  Identities=22%  Similarity=0.185  Sum_probs=140.6

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..+.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.   .+.+++.++..|.|
T Consensus        34 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~--~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t  108 (201)
T 3hra_A           34 EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG--AQGRTEILAYMLKH---ATPDLNKHNRYGGN  108 (201)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHH---SCCCTTCCCTTSCC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHhc---cCcccccccCCCCc
Confidence            45668899999999999999999999999999989999999999999  99999999999864   57788899999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcC-CCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCC-----HHHHHHHhhcCCC
Q 043188          100 PLHVAAKFGHSDIVRVLVERA-KLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQN-----VDVVELLTKEDPD  173 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~g~~  173 (197)
                      |||+|+..++.+++++|++.+ .++..                  .+..|.||||+|+..++     .+++++|++.|++
T Consensus       109 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~  170 (201)
T 3hra_A          109 ALIPAAEKGHIDNVKLLLEDGREDIDF------------------QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD  170 (201)
T ss_dssp             SHHHHHHTTCHHHHHHHHHHCCCCTTC------------------CCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcCC------------------CCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC
Confidence            999999999999999999998 66655                  89999999999999988     9999999999999


Q ss_pred             cccccccCCCcHHHHHHhcccCC
Q 043188          174 YQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       174 ~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      ++ .++..|.|||++|+..|+.+
T Consensus       171 ~~-~~~~~g~t~l~~A~~~~~~~  192 (201)
T 3hra_A          171 QS-IKDNSGRTAMDYANQKGYTE  192 (201)
T ss_dssp             TT-CCCTTSCCHHHHHHHHTCHH
T ss_pred             CC-ccCCCCCCHHHHHHHcCCHh
Confidence            98 99999999999999998754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=2.3e-31  Score=193.27  Aligned_cols=170  Identities=15%  Similarity=0.129  Sum_probs=144.2

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcH
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTP  100 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~  100 (197)
                      .+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.   ...+++.++..|.||
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~  127 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV--SADAQGVFQILIRN---RATDLDARMHDGTTP  127 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHS---TTSCTTCCCTTCCCH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHc---CCCCccccCCCCCcH
Confidence            3678899999999999999999999999988888889999999999  99999999998874   233778888889999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------------HHHhhccCCCCchHHHHHHhcCCHHHHH
Q 043188          101 LHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------------RQMIRMTNNEKNTALHEAVCHQNVDVVE  165 (197)
Q Consensus       101 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~  165 (197)
                      ||+|+..++.+++++|++.|++++..+..+.+++..+               +.+++..+..|.||||+|+..++.++++
T Consensus       128 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~  207 (253)
T 1yyh_A          128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK  207 (253)
T ss_dssp             HHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence            9999999999999999999888877665444444322               3345678889999999999999999999


Q ss_pred             HHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          166 LLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       166 ~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      +|++.|++++ .+|..|.||+++|+..|+.+
T Consensus       208 ~Ll~~ga~~~-~~d~~g~tpl~~A~~~g~~~  237 (253)
T 1yyh_A          208 VLLDHFANRD-ITDHMDRLPRDIAQERMHHD  237 (253)
T ss_dssp             HHHHTTCCTT-CCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHcCCCcc-ccccCCCCHHHHHHHcCCHH
Confidence            9999999988 89999999999999998765

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=1.2e-31  Score=197.11  Aligned_cols=168  Identities=21%  Similarity=0.125  Sum_probs=120.8

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHH---HhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCC
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIE---RLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKG   97 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   97 (197)
                      .++.|.||||.|+..|+.++|++|++.|.+   ++.++..|.||||+|+  ..|+.+++++|++.    +++++.++..|
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~----ga~~~~~~~~g   78 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA--ILGEASTVEKLYAA----GAGVLVAERGG   78 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCSSCCCTTS
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCCCCCCC
Confidence            456788889999999999999999988887   6677888899999999  88888888888885    78888888888


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCcc-----------------------------------------------chhhH
Q 043188           98 DTPLHVAAKFGHSDIVRVLVERAKLPQH-----------------------------------------------ENEEL  130 (197)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~-----------------------------------------------~~~~~  130 (197)
                      .||||+|+..++.+++++|++.++....                                               ....+
T Consensus        79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence            8888888888888888888887655221                                               11111


Q ss_pred             HhhHH---------------HHHHHhhccCC-CCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhccc
Q 043188          131 ESRVG---------------AARQMIRMTNN-EKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRS  194 (197)
Q Consensus       131 ~~~~~---------------~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~  194 (197)
                      ..++.               ..+..++..+. .|.||||+|+..++.+++++|++.|++++ .++..|.||||+|+..|+
T Consensus       159 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~  237 (282)
T 1oy3_D          159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT-ARMYGGRTPLGSALLRPN  237 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHTSSC
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc-ccccCCCCHHHHHHHcCC
Confidence            11111               11222333443 37777777777777777777777777766 677777777777776665


Q ss_pred             C
Q 043188          195 S  195 (197)
Q Consensus       195 ~  195 (197)
                      .
T Consensus       238 ~  238 (282)
T 1oy3_D          238 P  238 (282)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=2.4e-31  Score=190.61  Aligned_cols=160  Identities=18%  Similarity=0.155  Sum_probs=137.0

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHH-HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCccc-----ccCCCCC
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMARE-VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLL-----LQVNAKG   97 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~   97 (197)
                      .|.||||.|+..|+.+.++.|++. |.+++.++..|.||||+|+  ..|+.+++++|++.    +.++     +.++..|
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~----~~~~~~~~~~~~~~~g   75 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAA--LYDNLEAAMVLMEA----APELVFEPMTSELYEG   75 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHH----CGGGGGCCCCSTTTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHH--HcCCHHHHHHHHHc----CchhccccccccCCCC
Confidence            478899999999999999999997 8888889999999999999  99999999999997    5554     5667789


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccc
Q 043188           98 DTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYS  177 (197)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  177 (197)
                      .||||+|+..++.+++++|++.|+++.........     ....+..+..|.||||+|+..|+.+++++|++.|++++ .
T Consensus        76 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~  149 (232)
T 2rfa_A           76 QTALHIAVINQNVNLVRALLARGASVSARATGSVF-----HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR-A  149 (232)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG-----SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred             cCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcce-----eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-C
Confidence            99999999999999999999999987762211000     00112234589999999999999999999999999998 9


Q ss_pred             cccCCCcHHHHHHhcccC
Q 043188          178 ANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       178 ~~~~g~tpl~~A~~~~~~  195 (197)
                      +|..|.||||+|+..|+.
T Consensus       150 ~d~~g~t~L~~A~~~~~~  167 (232)
T 2rfa_A          150 QDSLGNTVLHILILQPNK  167 (232)
T ss_dssp             CCTTSCCHHHHHHTCSCH
T ss_pred             CCCCCCCHHHHHHHcCCh
Confidence            999999999999998874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=3e-31  Score=200.37  Aligned_cols=170  Identities=19%  Similarity=0.118  Sum_probs=148.0

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.|
T Consensus        53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~g~~~iv~~Ll~~----g~~~~~~~~~g~t  126 (351)
T 3utm_A           53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC--SYGHYEVTELLLKH----GACVNAMDLWQFT  126 (351)
T ss_dssp             CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTCCC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH--HCCCHHHHHHHHHC----CCCCCCCCCCCCC
Confidence            46678999999999999999999999999999999999999999999  99999999999986    8889999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhH-------------------------------------------------
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEEL-------------------------------------------------  130 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-------------------------------------------------  130 (197)
                      |||+|+..++.+++++|++.|+++...+...                                                 
T Consensus       127 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  206 (351)
T 3utm_A          127 PLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK  206 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccccc
Confidence            9999999999999999999998866432111                                                 


Q ss_pred             -----------------------HhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHH
Q 043188          131 -----------------------ESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLY  187 (197)
Q Consensus       131 -----------------------~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~  187 (197)
                                             ...+...+.+++..+..|.||||+|+..|+.+++++|++.|++++ .+|..|.||||
T Consensus       207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n-~~d~~g~t~L~  285 (351)
T 3utm_A          207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN-ALDSLGQTALH  285 (351)
T ss_dssp             CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHH
Confidence                                   001111223456788899999999999999999999999999998 99999999999


Q ss_pred             HHHhcccCC
Q 043188          188 MAADYRSSN  196 (197)
Q Consensus       188 ~A~~~~~~~  196 (197)
                      +|+..|+.+
T Consensus       286 ~A~~~~~~~  294 (351)
T 3utm_A          286 RAALAGHLQ  294 (351)
T ss_dssp             HHHHHTCHH
T ss_pred             HHHHcCcHH
Confidence            999988754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=2.4e-31  Score=193.18  Aligned_cols=160  Identities=20%  Similarity=0.197  Sum_probs=118.4

Q ss_pred             HHHHHcCCcHHHHHHHHHHHHHh-cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhC
Q 043188           30 FKAAAAGNLEPFKDMAREVIERL-LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFG  108 (197)
Q Consensus        30 ~~a~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  108 (197)
                      ..+...++.++++.|++.|.+++ ..+..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+|+..+
T Consensus        28 ~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~  101 (253)
T 1yyh_A           28 NSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAA--RYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSAD  101 (253)
T ss_dssp             ------------------------CCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHT
T ss_pred             chhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHH--HcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcC
Confidence            44788899999999999999987 46889999999999  99999999999986    8889999999999999999999


Q ss_pred             CHHHHHHHHHcCC-CCccchhhHHhhHHH---------------HHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCC
Q 043188          109 HSDIVRVLVERAK-LPQHENEELESRVGA---------------ARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDP  172 (197)
Q Consensus       109 ~~~~~~~ll~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  172 (197)
                      +.+++++|++.+. .+......+..++..               .+.+++..+..|.||||+|+..++.+++++|++.|+
T Consensus       102 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  181 (253)
T 1yyh_A          102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA  181 (253)
T ss_dssp             CHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999987 555554444333332               234467788899999999999999999999999999


Q ss_pred             CcccccccCCCcHHHHHHhcccCC
Q 043188          173 DYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       173 ~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      +++ .++..|.||||+|+..|+.+
T Consensus       182 ~~~-~~~~~g~tpL~~A~~~~~~~  204 (253)
T 1yyh_A          182 NKD-MQNNREETPLFLAAREGSYE  204 (253)
T ss_dssp             CTT-CCCTTSCCHHHHHHHHTCHH
T ss_pred             CCC-CcCCCCCCHHHHHHHCCCHH
Confidence            998 89999999999999988754

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=9e-31  Score=187.59  Aligned_cols=154  Identities=23%  Similarity=0.204  Sum_probs=139.0

Q ss_pred             ccccccCCHHHHHHHHcCCcHHHHHHHHHHHHH-----hcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccC
Q 043188           19 EISQSQIDPNLFKAAAAGNLEPFKDMAREVIER-----LLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQV   93 (197)
Q Consensus        19 ~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~-----~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~   93 (197)
                      ...+..|.||||.|+..|+.+++++|++.|.++     +..+..|.||||+|+  ..|+.+++++|++.    +.+++.+
T Consensus        31 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~  104 (232)
T 2rfa_A           31 HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAV--INQNVNLVRALLAR----GASVSAR  104 (232)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCC
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHH--HcCCHHHHHHHHhC----CCCCCcc
Confidence            346778999999999999999999999999887     456778999999999  99999999999986    7777776


Q ss_pred             CC-------------CCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCC
Q 043188           94 NA-------------KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQN  160 (197)
Q Consensus        94 ~~-------------~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~  160 (197)
                      +.             .|.||||+|+..++.+++++|++.|++++.                  .|..|.||||+|+..++
T Consensus       105 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------------------~d~~g~t~L~~A~~~~~  166 (232)
T 2rfa_A          105 ATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA------------------QDSLGNTVLHILILQPN  166 (232)
T ss_dssp             CCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHTCSC
T ss_pred             cCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHcCC
Confidence            55             799999999999999999999999999776                  89999999999999999


Q ss_pred             HHHH----HHHhhcCCCcc-----cccccCCCcHHHHHHhcccCC
Q 043188          161 VDVV----ELLTKEDPDYQ-----YSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       161 ~~~~----~~Ll~~g~~~~-----~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      .+++    ++|++.|++..     +.+|..|.|||++|+..|+.+
T Consensus       167 ~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~  211 (232)
T 2rfa_A          167 KTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIV  211 (232)
T ss_dssp             HHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHH
Confidence            9988    99999999873     488999999999999998754

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=4.9e-31  Score=188.79  Aligned_cols=168  Identities=22%  Similarity=0.202  Sum_probs=137.7

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..+.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t  108 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA--SAGXDEIVKALLVK----GAHVNAVNQNGCT  108 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHH--HcCHHHHHHHHHHc----CCCCCCCCCCCCC
Confidence            35667889999999999999999999999888888889999999999  99999999998885    7888888889999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------------HHHhhccCCCCchHHHHHHhcCCHHHH
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------------RQMIRMTNNEKNTALHEAVCHQNVDVV  164 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~a~~~~~~~~~  164 (197)
                      |||+|+..++.+++++|++.+.++...+..+..++..+               +.+++..+..|.||||+|+..++.+++
T Consensus       109 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  188 (231)
T 3aji_A          109 PLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA  188 (231)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHH
Confidence            99999999999999999999888776554433333221               233456677888888888888888888


Q ss_pred             HHHhhcCCCcccccccCCCcHHHHHHhccc
Q 043188          165 ELLTKEDPDYQYSANNYGKTPLYMAADYRS  194 (197)
Q Consensus       165 ~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~  194 (197)
                      ++|++.|++++ .++..|.||+++|+..++
T Consensus       189 ~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          189 KFLVTQGASIY-IENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             HHHHHTTCCSC-CCCTTSCCHHHHSCHHHH
T ss_pred             HHHHHCCCCCC-CCCCCCCCHHHHHHhhHH
Confidence            88888888887 888888888888876654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=5.2e-32  Score=184.55  Aligned_cols=150  Identities=24%  Similarity=0.343  Sum_probs=134.5

Q ss_pred             ccccccCCHHHHHHHHcCCcHHHHHHHHHH-HHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCC
Q 043188           19 EISQSQIDPNLFKAAAAGNLEPFKDMAREV-IERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKG   97 (197)
Q Consensus        19 ~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   97 (197)
                      ...++.+.++|+.|+..|+.+.++.|++.+ .+....+..|.||||+|+  ..++.+++++|++.    +.+++.++..|
T Consensus         2 ~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g   75 (165)
T 3twr_A            2 AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA--GYNRVSVVEYLLQH----GADVHAKDKGG   75 (165)
T ss_dssp             ----CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTS
T ss_pred             CCCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHH--HcChHHHHHHHHhc----CCCCCccCCCC
Confidence            356778899999999999999999999854 444467778899999999  99999999999986    88899999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccc
Q 043188           98 DTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYS  177 (197)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  177 (197)
                      .||||+|+..++.+++++|++.++++..                  .+..|.||||+|+..++.+++++|++.|++++ .
T Consensus        76 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~  136 (165)
T 3twr_A           76 LVPLHNACSYGHYEVAELLVKHGAVVNV------------------ADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-K  136 (165)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCHHHHHHHcCcHHHHHHHHhCCCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-c
Confidence            9999999999999999999999998776                  88999999999999999999999999999998 9


Q ss_pred             cccCCCcHHHHHHhccc
Q 043188          178 ANNYGKTPLYMAADYRS  194 (197)
Q Consensus       178 ~~~~g~tpl~~A~~~~~  194 (197)
                      +|..|.||+++|.. ++
T Consensus       137 ~~~~g~t~l~~a~~-~~  152 (165)
T 3twr_A          137 KNRDGNTPLDLVKD-GD  152 (165)
T ss_dssp             CCTTSCCTGGGSCT-TC
T ss_pred             cCCCCCChhHhHhc-CC
Confidence            99999999999876 44

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=7e-31  Score=187.03  Aligned_cols=170  Identities=15%  Similarity=0.129  Sum_probs=141.7

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcH
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTP  100 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~  100 (197)
                      .+..+.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.   .+..++.++..|.||
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~   95 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV--SADAQGVFQILIRN---RATDLDARMHDGTTP   95 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHB---TTSCTTCCCTTCCCH
T ss_pred             cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHHc---CCCCcccCCCCCCcH
Confidence            3567899999999999999999999999988888899999999999  99999999999884   334778888899999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------------HHHhhccCCCCchHHHHHHhcCCHHHHH
Q 043188          101 LHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------------RQMIRMTNNEKNTALHEAVCHQNVDVVE  165 (197)
Q Consensus       101 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~  165 (197)
                      ||+|+..++.+++++|++.++++...+..+.+++..+               +.+++..+..|.||||+|+..++.++++
T Consensus        96 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  175 (223)
T 2f8y_A           96 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK  175 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHH
Confidence            9999999999999999999988877655444333322               2345667788889999998888899999


Q ss_pred             HHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          166 LLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       166 ~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      +|++.|++++ .++..|.||+++|+..++.+
T Consensus       176 ~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~  205 (223)
T 2f8y_A          176 VLLDHFANRD-ITDHMDRLPRDIAQERMHHD  205 (223)
T ss_dssp             HHHHTTCCTT-CCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHcCCCCc-cccccCCCHHHHHHHhcchH
Confidence            9998888887 88888889999988887654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.2e-31  Score=200.23  Aligned_cols=167  Identities=19%  Similarity=0.205  Sum_probs=138.0

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcc---cccHHHHHHHHHhCCcccccCCCCC
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERE---NVSTKFVAEILEKCPSLLLQVNAKG   97 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~   97 (197)
                      .+..|.||||+|+..|+.++|++|+++|.+++.++..|.||||+|+  ..|+   .++++.|++.+   ..+++.++..|
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~--~~g~~~~~~~~~~ll~~~---~~~~~~~d~~g  201 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV--KSVNNYDSGTFEALLDYL---YPCLILEDSMN  201 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHH--HSSHHHHTTCHHHHHHHH---GGGGGEECTTC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--HhcccccHHHHHHHHHhh---hccccCCCCCC
Confidence            5778999999999999999999999999999999999999999999  9888   78888888873   35688899999


Q ss_pred             CcHHHHHHH----hCCHHHHHHHHHc--------------------CCCCccchhhHHhhHHHH-------HHHhhccCC
Q 043188           98 DTPLHVAAK----FGHSDIVRVLVER--------------------AKLPQHENEELESRVGAA-------RQMIRMTNN  146 (197)
Q Consensus        98 ~t~l~~a~~----~~~~~~~~~ll~~--------------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  146 (197)
                      .||||+|+.    .++.+++++|++.                    +.++......+..++...       ...++..+.
T Consensus       202 ~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~  281 (327)
T 1sw6_A          202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS  281 (327)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCT
T ss_pred             CCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCC
Confidence            999999999    8999999999987                    556555555544444322       225888999


Q ss_pred             CCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcc
Q 043188          147 EKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYR  193 (197)
Q Consensus       147 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~  193 (197)
                      .|+||||+|+..|+.+++++|++.|++++ .+|..|+||||+|+..|
T Consensus       282 ~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~-~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          282 NGDTCLNIAARLGNISIVDALLDYGADPF-IANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHHTTCCTT-CCCTTSCCGGGGTCC--
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcC
Confidence            99999999999999999999999999998 99999999999998765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=5.9e-31  Score=191.30  Aligned_cols=151  Identities=23%  Similarity=0.205  Sum_probs=138.1

Q ss_pred             ccccCCHHHHHHHHc---CCcHHHHHHHHHHHHHhc-----------ccccCCcHHHHHHHhhhcccccHHHHHHHHHhC
Q 043188           21 SQSQIDPNLFKAAAA---GNLEPFKDMAREVIERLL-----------TAKTKNTILHINIISQERENVSTKFVAEILEKC   86 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~---g~~~~v~~Ll~~g~~~~~-----------~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~   86 (197)
                      .+..|.||||.|+..   |+.+++++|++.|.+++.           .+..|.||||+|+  ..|+.+++++|++.    
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~----  112 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAI--EKRSLQCVKLLVEN----  112 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHH--HTTCHHHHHHHHHT----
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHH--HcCCHHHHHHHHHc----
Confidence            577899999999999   999999999999998762           2367999999999  99999999999986    


Q ss_pred             CcccccCCCC-------------CCcHHHHHHHhCCHHHHHHHHH---cCCCCccchhhHHhhHHHHHHHhhccCCCCch
Q 043188           87 PSLLLQVNAK-------------GDTPLHVAAKFGHSDIVRVLVE---RAKLPQHENEELESRVGAARQMIRMTNNEKNT  150 (197)
Q Consensus        87 ~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  150 (197)
                      +++++.++..             |.||||+|+..++.+++++|++   .|++++.                  .|..|+|
T Consensus       113 ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~------------------~d~~g~T  174 (256)
T 2etb_A          113 GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA------------------TDSLGNT  174 (256)
T ss_dssp             TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC------------------CCTTSCC
T ss_pred             CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCc------------------cCCCCCC
Confidence            8888888875             9999999999999999999999   8988776                  8999999


Q ss_pred             HHHHHHh--cCCHH-------HHHHHhhcCCCc-------ccccccCCCcHHHHHHhcccCC
Q 043188          151 ALHEAVC--HQNVD-------VVELLTKEDPDY-------QYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       151 ~l~~a~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      |||+|+.  .++.+       ++++|++.|+++       + .+|..|.||||+|+..|+.+
T Consensus       175 pLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~-~~d~~g~tpL~~A~~~g~~~  235 (256)
T 2etb_A          175 VLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE-ISNHQGLTPLKLAAKEGKIE  235 (256)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGG-CCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccc-ccCCCCCCHHHHHHHhCCHH
Confidence            9999998  78888       999999999998       5 89999999999999998754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=5.4e-31  Score=189.27  Aligned_cols=146  Identities=23%  Similarity=0.265  Sum_probs=68.6

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHH
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHV  103 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~  103 (197)
                      .+.|||+.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..|+.+++++|++.   .+.+++.++..|.||||+
T Consensus        43 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~  117 (237)
T 3b7b_A           43 DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAA--KKGHYEVVQYLLSN---GQMDVNCQDDGGWTPMIW  117 (237)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHH--HTTCHHHHHHHHTT---TCCCTTCCCTTSCCHHHH
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHhC---CCCCcccCCCCCCCHHHH
Confidence            3444444444444444444444444444444444444444444  44444444444442   113444444445555555


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCC
Q 043188          104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGK  183 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  183 (197)
                      |+..++.+++++|++.|+++..                  .+..|.||||+|+..++.+++++|++.|++++ .++..|.
T Consensus       118 A~~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~  178 (237)
T 3b7b_A          118 ATEYKHVDLVKLLLSKGSDINI------------------RDNEENICLHWAAFSGCVDIAEILLAAKCDLH-AVNIHGD  178 (237)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT-CCCTTCC
T ss_pred             HHHcCCHHHHHHHHHCCCCCCc------------------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCC
Confidence            5555555555555555544443                  34444444444444444444444444444444 4444444


Q ss_pred             cHHHHHHhcc
Q 043188          184 TPLYMAADYR  193 (197)
Q Consensus       184 tpl~~A~~~~  193 (197)
                      ||||+|+..|
T Consensus       179 t~L~~A~~~~  188 (237)
T 3b7b_A          179 SPLHIAAREN  188 (237)
T ss_dssp             CHHHHHHHTT
T ss_pred             CHHHHHHHhC
Confidence            4444444444

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.2e-30  Score=178.40  Aligned_cols=133  Identities=25%  Similarity=0.278  Sum_probs=122.3

Q ss_pred             ccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           19 EISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        19 ~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ...+..|.|||+.|+..|+.+.++.|++.|.+++.++..|.||||+|+  ..|+.+++++|++.    +++++.++..|.
T Consensus        31 n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~--~~g~~~~v~~Ll~~----gadvn~~d~~G~  104 (169)
T 4gpm_A           31 NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA--ENGHKEVVKLLISK----GADVNAKDSDGR  104 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSC
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHH--HcCCHHHHHHHHHC----cCCCCCCCCCCC
Confidence            356778999999999999999999999999999999999999999999  99999999999986    899999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcc
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQ  175 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  175 (197)
                      ||||+|+..++.+++++|++.|+++..                  .|..|+||||+|+..|+.+++++|+++|+++.
T Consensus       105 TpLh~A~~~g~~~~v~~Ll~~gad~~~------------------~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          105 TPLHHAAENGHKEVVKLLISKGADVNT------------------SDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            999999999999999999999999876                  89999999999999999999999999999975

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=7.1e-31  Score=177.27  Aligned_cols=145  Identities=21%  Similarity=0.262  Sum_probs=134.1

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHH-HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHH
Q 043188           25 IDPNLFKAAAAGNLEPFKDMARE-VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHV  103 (197)
Q Consensus        25 ~~~~l~~a~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~  103 (197)
                      +.++|+.|+..|+.+.++.|++. +.+++..+..|.||||+ +  ..|+.+++++|++.    +.+++.++..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   74 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-M--MFGSTAIALELLKQ----GASPNVQDTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-S--CTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-H--HcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHH
Confidence            46899999999999999999998 22677888999999999 9  89999999999986    88899999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCC
Q 043188          104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGK  183 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  183 (197)
                      |+..++.+++++|++.|+++..                  .+..|.||||+|+..++.+++++|++. ++++ .++..|.
T Consensus        75 A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~  134 (156)
T 1bd8_A           75 AARTGFLDTLKVLVEHGADVNV------------------PDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGL  134 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCC------------------CCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSC
T ss_pred             HHHcCcHHHHHHHHHcCCCCCC------------------cCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCC
Confidence            9999999999999999998776                  889999999999999999999999999 8888 8999999


Q ss_pred             cHHHHHHhcccCC
Q 043188          184 TPLYMAADYRSSN  196 (197)
Q Consensus       184 tpl~~A~~~~~~~  196 (197)
                      |||++|+..|+.+
T Consensus       135 t~l~~A~~~~~~~  147 (156)
T 1bd8_A          135 TPLELALQRGAQD  147 (156)
T ss_dssp             CHHHHHHHSCCHH
T ss_pred             CHHHHHHHcCcHH
Confidence            9999999998754

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=7.3e-31  Score=187.90  Aligned_cols=148  Identities=19%  Similarity=0.089  Sum_probs=112.0

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..+.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus        68 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~----g~~~~~~~~~g~t  141 (231)
T 3aji_A           68 DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA--SKNRHEIAVMLLEG----GANPDAKDHYDAT  141 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCCcCCCCCc
Confidence            34556777888888888888888888887777777777888888888  77777777777764    6677777777778


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------------HHHhhccCCCCchHHHHHHhcCCHHHH
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------------RQMIRMTNNEKNTALHEAVCHQNVDVV  164 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~a~~~~~~~~~  164 (197)
                      |||+|+..++.+++++|++.+.+++..+..+.+++..+               +.+++..+..|.||+++|+..++.+++
T Consensus       142 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~  221 (231)
T 3aji_A          142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILK  221 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHH
Confidence            88888888888888888877777766554443333322               233556889999999999999999999


Q ss_pred             HHHhhcCCC
Q 043188          165 ELLTKEDPD  173 (197)
Q Consensus       165 ~~Ll~~g~~  173 (197)
                      ++|.+.|++
T Consensus       222 ~lL~~~~a~  230 (231)
T 3aji_A          222 RLAEGEEAS  230 (231)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHcccccc
Confidence            999988765

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=2.1e-30  Score=184.52  Aligned_cols=149  Identities=17%  Similarity=0.077  Sum_probs=96.4

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHH-HHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVI-ERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      .+..+.||||.|+..|+.+++++|++.+. +++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus        54 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~----g~~~~~~~~~g~t  127 (223)
T 2f8y_A           54 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA--RLAVEGMLEDLINS----HADVNAVDDLGKS  127 (223)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH--HHTCHHHHHHHHHT----TCCTTCBCTTSCB
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH--HhCcHHHHHHHHHc----CCCCcCcCCCCCc
Confidence            34455666666666666666666666554 44455556666666666  66666666666553    5556666666666


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------------HHHhhccCCCCchHHHHHHhcCCHHHH
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------------RQMIRMTNNEKNTALHEAVCHQNVDVV  164 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~a~~~~~~~~~  164 (197)
                      |||+|+..++.+++++|++.|++++..+..+.+++..+               +.+++..+..|.||+++|+..++.+++
T Consensus       128 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~  207 (223)
T 2f8y_A          128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV  207 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHH
Confidence            66666666666666666666665555443333222221               222455888999999999999999999


Q ss_pred             HHHhhcCCCcc
Q 043188          165 ELLTKEDPDYQ  175 (197)
Q Consensus       165 ~~Ll~~g~~~~  175 (197)
                      ++|++.|+...
T Consensus       208 ~~L~~~g~~~~  218 (223)
T 2f8y_A          208 RLLDEYNLVRS  218 (223)
T ss_dssp             HHHHHTTCSSC
T ss_pred             HHHHHcCCCcc
Confidence            99999998754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=2e-30  Score=191.53  Aligned_cols=171  Identities=19%  Similarity=0.101  Sum_probs=146.9

Q ss_pred             CcccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCC
Q 043188           17 NGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAK   96 (197)
Q Consensus        17 ~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   96 (197)
                      .....+..|.||||.|+..|+.+++++|++.|.+++.++..|.||||+|+  ..|+.+++++|++.    +.+++.++..
T Consensus        51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~----ga~~~~~~~~  124 (285)
T 3d9h_A           51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEAC--LGGHLSCVKILLKH----GAQVNGVTAD  124 (285)
T ss_dssp             TTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHH--HTTCHHHHHHHHHT----TCCSSCCCTT
T ss_pred             cccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH--HCCcHHHHHHHHHC----CCCCCCCCCC
Confidence            34456778999999999999999999999999999889999999999999  99999999999986    8889999999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHH---------------HHHHHhhccCCCCchHHHHHHhcCCH
Q 043188           97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG---------------AARQMIRMTNNEKNTALHEAVCHQNV  161 (197)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~g~t~l~~a~~~~~~  161 (197)
                      |.||||+|+..++.+++++|++.++++..... +..++.               ..+.+++..+..|.||||+|+..++.
T Consensus       125 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~  203 (285)
T 3d9h_A          125 WHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR  203 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCT-TSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            99999999999999999999999988765332 222222               12334567888999999999999999


Q ss_pred             HHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          162 DVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       162 ~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      +++++|++.|++++  .+..|.||||+|+..|+.+
T Consensus       204 ~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~  236 (285)
T 3d9h_A          204 ACVKKLLESGADVN--QGKGQDSPLHAVVRTASEE  236 (285)
T ss_dssp             HHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHH
T ss_pred             HHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHH
Confidence            99999999999987  4888999999999988754

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=2.2e-30  Score=192.05  Aligned_cols=169  Identities=22%  Similarity=0.211  Sum_probs=144.5

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcH
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTP  100 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~  100 (197)
                      ....+.++|+.|+..|+.+.|++|++.|.+++..+..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~----ga~~~~~~~~g~tp  109 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC--IDDNVDMVKFLVEN----GANINQPDNEGWIP  109 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSCCH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH--HcCCHHHHHHHHHC----CCCCCCCCCCCCcH
Confidence            3446789999999999999999999999999989999999999999  99999999999986    88999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------HHH-------------------------------
Q 043188          101 LHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------RQM-------------------------------  140 (197)
Q Consensus       101 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------~~~-------------------------------  140 (197)
                      ||+|+..++.+++++|+++|+++...+..+..++..+         ...                               
T Consensus       110 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (299)
T 1s70_B          110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH  189 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccC
Confidence            9999999999999999999998877654433332211         000                               


Q ss_pred             --hhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          141 --IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       141 --~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                        ....+..|.||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+..|+.+
T Consensus       190 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~-~~d~~g~tpL~~A~~~~~~~  246 (299)
T 1s70_B          190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN-IKDYDGWTPLHAAAHWGKEE  246 (299)
T ss_dssp             CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHTTCHH
T ss_pred             cchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHhcCCHH
Confidence              01134679999999999999999999999999988 89999999999999988754

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.4e-30  Score=191.56  Aligned_cols=154  Identities=17%  Similarity=0.212  Sum_probs=139.6

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHH-HHhcccccCCcHHHHHHHh---hhcccccHHHHHHHHHhCCcccccCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVI-ERLLTAKTKNTILHINIIS---QERENVSTKFVAEILEKCPSLLLQVNA   95 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~lh~a~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~   95 (197)
                      ..+..|.||||+|+..|+.+++++|++.|. +++..+..|.||||+|+..   ..++.++++++++.    +...+..+.
T Consensus       106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~----g~~~~~~~~  181 (276)
T 4hbd_A          106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL----GNINAKASQ  181 (276)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH----SCTTCCCTT
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc----CCCccccCC
Confidence            456788999999999999999999999997 8888999999999999932   23667788888776    788888888


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhh-cCCCc
Q 043188           96 KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK-EDPDY  174 (197)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~  174 (197)
                      .|.||||+|+..++.+++++|++.|++++.                  .|..|.||||+|+..|+.+++++|++ .|+++
T Consensus       182 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~------------------~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~  243 (276)
T 4hbd_A          182 AGQTALMLAVSHGRVDVVKALLACEADVNV------------------QDDDGSTALMCACEHGHKEIAGLLLAVPSCDI  243 (276)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCC------------------CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC
Confidence            999999999999999999999999999876                  89999999999999999999999999 89999


Q ss_pred             ccccccCCCcHHHHHHhcccCC
Q 043188          175 QYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       175 ~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      + .+|..|.|||++|+..|+.+
T Consensus       244 ~-~~d~~g~TpL~~A~~~g~~~  264 (276)
T 4hbd_A          244 S-LTDRDGSTALMVALDAGQSE  264 (276)
T ss_dssp             T-CCCTTSCCHHHHHHHHTCHH
T ss_pred             c-CcCCCCCCHHHHHHHcCCHH
Confidence            8 99999999999999998754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=4.5e-30  Score=184.74  Aligned_cols=172  Identities=19%  Similarity=0.136  Sum_probs=105.7

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..+.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.......+++.++..|.|
T Consensus        41 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t  118 (241)
T 1k1a_A           41 IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC--EHRSPTCLRALLDSAAPGTLDLEARNYDGLT  118 (241)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC
T ss_pred             cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCccccccccCcCCCc
Confidence            44556777788888888777788877777777777777778888877  7777777777777511111256666777777


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccch-hhHHhhHHH---------------HHHHhhccCCCCchHHHHHHhcCCHHH
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHEN-EELESRVGA---------------ARQMIRMTNNEKNTALHEAVCHQNVDV  163 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~~~---------------~~~~~~~~~~~g~t~l~~a~~~~~~~~  163 (197)
                      |||+|+..++.+++++|++.+.++.... ..+..++..               .+.+++..+..|.||||+|+..++.++
T Consensus       119 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  198 (241)
T 1k1a_A          119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPL  198 (241)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            7777777777777777777777765532 111111111               122234444555555555555555555


Q ss_pred             HHHHhhcCCCcccccccCCCcHHHHHHhccc
Q 043188          164 VELLTKEDPDYQYSANNYGKTPLYMAADYRS  194 (197)
Q Consensus       164 ~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~  194 (197)
                      +++|++.|++++ .+|..|.||+++|+..|+
T Consensus       199 v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~  228 (241)
T 1k1a_A          199 VRTLVRSGADSS-LKNCHNDTPLMVARSRRV  228 (241)
T ss_dssp             HHHHHHTTCCTT-CCCTTSCCTTTTCSSHHH
T ss_pred             HHHHHhcCCCCC-CcCCCCCCHHHHHHhcCc
Confidence            555555555554 555555555555554443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=3.7e-31  Score=182.71  Aligned_cols=148  Identities=22%  Similarity=0.231  Sum_probs=133.9

Q ss_pred             ccCCHHHHHHHHcCCcHHHHHHHHH-HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHH
Q 043188           23 SQIDPNLFKAAAAGNLEPFKDMARE-VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPL  101 (197)
Q Consensus        23 ~~~~~~l~~a~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l  101 (197)
                      +++.++|+.|+..|+.+.++.|++. +.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|||
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L   76 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWAC--REGRSAVVEMLIMR----GARINVMNRGDDTPL   76 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTCCCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHH--HcCcHHHHHHHHHc----CCCCCCcCCCCCCHH
Confidence            4567789999999999999999997 4556788899999999999  99999999999986    888999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccC
Q 043188          102 HVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNY  181 (197)
Q Consensus       102 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~  181 (197)
                      |+|+..++.+++++|++.|++++.                  .+..|.||||+|+..++.+++++|++.|++++ .++..
T Consensus        77 ~~A~~~~~~~~v~~Ll~~g~~~~~------------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~  137 (179)
T 3f6q_A           77 HLAASHGHRDIVQKLLQYKADINA------------------VNEHGNVPLHYACFWGQDQVAEDLVANGALVS-ICNKY  137 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS-BCCTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-hhccC
Confidence            999999999999999999998776                  89999999999999999999999999999998 99999


Q ss_pred             CCcHHHHHHhcccC
Q 043188          182 GKTPLYMAADYRSS  195 (197)
Q Consensus       182 g~tpl~~A~~~~~~  195 (197)
                      |.||+++|+..++.
T Consensus       138 g~tpl~~A~~~~~~  151 (179)
T 3f6q_A          138 GEMPVDKAKAPLRE  151 (179)
T ss_dssp             SCCGGGGSCHHHHH
T ss_pred             CCCcHHHHHHHHHH
Confidence            99999999876653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=2.4e-31  Score=191.13  Aligned_cols=156  Identities=25%  Similarity=0.209  Sum_probs=138.2

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHh--CCcccccCCCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEK--CPSLLLQVNAKG   97 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~   97 (197)
                      ..+..|.||||.|+..|+.+++++|++.|.+++.++..|.||||+|+  ..++.+++++|++....  ....++..+..|
T Consensus        40 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  117 (236)
T 1ikn_D           40 FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC--EQGCLASVGVLTQSCTTPHLHSILKATNYNG  117 (236)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH--HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHhcccchhHHHHhhccCCCC
Confidence            45667899999999999999999999999998888999999999999  99999999999885110  012356778889


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCC-CCchHHHHHHhcCCHHHHHHHhhcCCCccc
Q 043188           98 DTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNN-EKNTALHEAVCHQNVDVVELLTKEDPDYQY  176 (197)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  176 (197)
                      .||||+|+..++.+++++|++.|+++..                  .+. .|.||||+|+..++.+++++|++.|++++ 
T Consensus       118 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-  178 (236)
T 1ikn_D          118 HTCLHLASIHGYLGIVELLVSLGADVNA------------------QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-  178 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTC------------------CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCC------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence            9999999999999999999999998776                  776 99999999999999999999999999998 


Q ss_pred             ccccCCCcHHHHHHhcccCC
Q 043188          177 SANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       177 ~~~~~g~tpl~~A~~~~~~~  196 (197)
                      .++..|.|||++|+..|+.+
T Consensus       179 ~~~~~g~tpl~~A~~~~~~~  198 (236)
T 1ikn_D          179 RVTYQGYSPYQLTWGRPSTR  198 (236)
T ss_dssp             CCCTTCCCGGGGCTTSSCHH
T ss_pred             cccCCCCCHHHHHHccCchH
Confidence            99999999999999888754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=3.1e-30  Score=184.22  Aligned_cols=149  Identities=17%  Similarity=0.131  Sum_probs=106.4

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHH--HHHhc-ccccCCcHHHHHHHhhhcccccHHHHHHHHHhCC--cccccCCC
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREV--IERLL-TAKTKNTILHINIISQERENVSTKFVAEILEKCP--SLLLQVNA   95 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g--~~~~~-~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~   95 (197)
                      .+..|.||||.|+..|+.+++++|++.|  .++.. .+..|.||||+|+  ..|+.+++++|++.    +  .+++.++.
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~----g~~~~~~~~~~  105 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC--SVGNLEVVKSLYDR----PLKPDLNKITN  105 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH--HHCCHHHHHHHHSS----SSCCCTTCCCT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH--HcCCHHHHHHHHhC----CCCcccccCCc
Confidence            4567788888888888888888888887  44444 6778888888888  88888888887774    4  66777788


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcC-CCc
Q 043188           96 KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKED-PDY  174 (197)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~  174 (197)
                      .|.||||+|+..++.+++++|++.|.++..                  .+..|.||||+|+..++.+++++|++.| +++
T Consensus       106 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  167 (228)
T 2dzn_A          106 QGVTCLHLAVGKKWFEVSQFLIENGASVRI------------------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAV  167 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSCC------------------CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCS
T ss_pred             CCCCHHHHHHHcCCHhHHHHHHHcCCCccc------------------cCCCCCCHHHHHHHcCCHHHHHHHHhcCcccc
Confidence            888888888888888888888888887766                  4555555555555555555555555555 444


Q ss_pred             ccccccCCCcHHHHHHhccc
Q 043188          175 QYSANNYGKTPLYMAADYRS  194 (197)
Q Consensus       175 ~~~~~~~g~tpl~~A~~~~~  194 (197)
                      + .+|..|.||||+|+..|+
T Consensus       168 ~-~~d~~g~t~L~~A~~~~~  186 (228)
T 2dzn_A          168 N-WQDKQGWTPLFHALAEGH  186 (228)
T ss_dssp             C-CCCTTSCCHHHHHHHTTC
T ss_pred             c-CcCCCCCCHHHHHHHcCC
Confidence            4 555555555555555544

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=4.5e-30  Score=188.34  Aligned_cols=152  Identities=20%  Similarity=0.181  Sum_probs=136.9

Q ss_pred             ccccCCHHHHHHHHc---CCcHHHHHHHHHHHHH-------hc----ccccCCcHHHHHHHhhhcccccHHHHHHHHHhC
Q 043188           21 SQSQIDPNLFKAAAA---GNLEPFKDMAREVIER-------LL----TAKTKNTILHINIISQERENVSTKFVAEILEKC   86 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~---g~~~~v~~Ll~~g~~~-------~~----~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~   86 (197)
                      .+..+.||||+|+..   |+.+++++|++.|.+.       +.    .+..|.||||+|+  ..|+.+++++|++.    
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~--~~g~~~~v~~Ll~~----  123 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAI--ERRNMTLVTLLVEN----  123 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHH--HTTCHHHHHHHHHT----
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHH--HcCCHHHHHHHHHC----
Confidence            467899999999987   9999999999999873       32    5568999999999  99999999999996    


Q ss_pred             CcccccCCC--------------CCCcHHHHHHHhCCHHHHHHHHH---cCCCCccchhhHHhhHHHHHHHhhccCCCCc
Q 043188           87 PSLLLQVNA--------------KGDTPLHVAAKFGHSDIVRVLVE---RAKLPQHENEELESRVGAARQMIRMTNNEKN  149 (197)
Q Consensus        87 ~~~~~~~~~--------------~~~t~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  149 (197)
                      +.+++.++.              .|.||||+|+..++.+++++|++   .|++++.                  .+..|+
T Consensus       124 ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~------------------~d~~g~  185 (273)
T 2pnn_A          124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA------------------RDSVGN  185 (273)
T ss_dssp             TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC------------------CCTTSC
T ss_pred             CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee------------------eCCCCC
Confidence            888888886              79999999999999999999999   8888776                  899999


Q ss_pred             hHHHHHHhcCC---------HHHHHHHhhcCCCcc------cccccCCCcHHHHHHhcccCC
Q 043188          150 TALHEAVCHQN---------VDVVELLTKEDPDYQ------YSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       150 t~l~~a~~~~~---------~~~~~~Ll~~g~~~~------~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      ||||+|+..++         .+++++|++.|++++      +.+|..|.||||+|+..|+.+
T Consensus       186 tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~  247 (273)
T 2pnn_A          186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG  247 (273)
T ss_dssp             CHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             cHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHH
Confidence            99999999888         899999999999986      258999999999999998754

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2.4e-30  Score=188.39  Aligned_cols=151  Identities=25%  Similarity=0.200  Sum_probs=135.2

Q ss_pred             cccCCHHHHHHH---HcCCcHHHHHHHHHHHHHh-----------cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCC
Q 043188           22 QSQIDPNLFKAA---AAGNLEPFKDMAREVIERL-----------LTAKTKNTILHINIISQERENVSTKFVAEILEKCP   87 (197)
Q Consensus        22 ~~~~~~~l~~a~---~~g~~~~v~~Ll~~g~~~~-----------~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~   87 (197)
                      +..|.||||.|+   ..|+.++++.|++.|.+..           ..+..|.||||+|+  ..|+.+++++|++.    +
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~----g  116 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI--ERRCKHYVELLVEK----G  116 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHH--HTTCHHHHHHHHHT----T
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHH--HcCCHHHHHHHHhC----C
Confidence            367999999999   7799999999999997632           33458999999999  99999999999996    8


Q ss_pred             cccccCC--------------CCCCcHHHHHHHhCCHHHHHHHHH---cCCCCccchhhHHhhHHHHHHHhhccCCCCch
Q 043188           88 SLLLQVN--------------AKGDTPLHVAAKFGHSDIVRVLVE---RAKLPQHENEELESRVGAARQMIRMTNNEKNT  150 (197)
Q Consensus        88 ~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  150 (197)
                      ++++.++              ..|.||||+|+..++.+++++|++   .|++++.                  .|..|+|
T Consensus       117 a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~------------------~d~~g~T  178 (260)
T 3jxi_A          117 ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR------------------QDSRGNT  178 (260)
T ss_dssp             CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC------------------CCTTSCC
T ss_pred             CCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcc------------------cCCCCCc
Confidence            8888888              689999999999999999999999   8888776                  8999999


Q ss_pred             HHHHHHhcCC---------HHHHHHHhhcCCCcc------cccccCCCcHHHHHHhcccCC
Q 043188          151 ALHEAVCHQN---------VDVVELLTKEDPDYQ------YSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       151 ~l~~a~~~~~---------~~~~~~Ll~~g~~~~------~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      |||+|+..++         .+++++|++.|++++      +.+|..|.||||+|+..|+.+
T Consensus       179 pLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~  239 (260)
T 3jxi_A          179 VLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG  239 (260)
T ss_dssp             HHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHH
Confidence            9999998887         799999999999983      279999999999999998754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.8e-30  Score=190.16  Aligned_cols=152  Identities=18%  Similarity=0.209  Sum_probs=119.1

Q ss_pred             cccccCCHHHHHHHHcCCcH-HHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLE-PFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~-~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ..+..+.+||+.|+..++.+ .++.|++.|.+++.+|..|.||||+|+  ..|+.+++++|++.    +++++.++..|.
T Consensus        47 ~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~--~~g~~~~v~~Ll~~----~a~~~~~~~~g~  120 (269)
T 4b93_B           47 AADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAA--LHGRADLIPLLLKH----GANAGARNADQA  120 (269)
T ss_dssp             ----------------------------CCCCTTCCCTTSCCHHHHHH--HTTCTTHHHHHHHT----TCCTTCCCTTCC
T ss_pred             ccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH--HcCcHHHHHHHHhc----CCCcCccCCCCC
Confidence            35567788999999988765 789999999999999999999999999  99999999999985    888999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccc
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSA  178 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  178 (197)
                      ||+|+|+..++.+++++|++.|++++.                  .|..|.||||+|+..|+.+++++|++.|++++ .+
T Consensus       121 t~l~~a~~~~~~~~~~~Ll~~g~~~n~------------------~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn-~~  181 (269)
T 4b93_B          121 VPLHLACQQGHFQVVKCLLDSNAKPNK------------------KDLSGNTPLIYACSGGHHELVALLLQHGASIN-AS  181 (269)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCC------------------CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT-CB
T ss_pred             CccccccccChHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-cc
Confidence            999999999999999999999999876                  89999999999999999999999999999998 99


Q ss_pred             ccCCCcHHHHHHhcccCC
Q 043188          179 NNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       179 ~~~g~tpl~~A~~~~~~~  196 (197)
                      +..|.||||+|+..|+.+
T Consensus       182 ~~~g~t~Lh~A~~~g~~~  199 (269)
T 4b93_B          182 NNKGNTALHEAVIEKHVF  199 (269)
T ss_dssp             CTTSCBHHHHHHHTTCHH
T ss_pred             ccCCCcHHHHHHHcCCHH
Confidence            999999999999998754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=2.9e-30  Score=185.70  Aligned_cols=145  Identities=13%  Similarity=0.107  Sum_probs=80.3

Q ss_pred             cccCCHHHHHHHHcCCcHHHHHHHHHHH----HHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCC-CC
Q 043188           22 QSQIDPNLFKAAAAGNLEPFKDMAREVI----ERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVN-AK   96 (197)
Q Consensus        22 ~~~~~~~l~~a~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~   96 (197)
                      +..+.+|||.|+..|+.+++++|++.+.    +++..+..|.||||+|+  ..++.+++++|++.    +.+++..+ ..
T Consensus        76 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~----g~~~~~~~~~~  149 (241)
T 1k1a_A           76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV--NTECQETVQLLLER----GADIDAVDIKS  149 (241)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHH--HcCCHHHHHHHHHc----CCCcccccccC
Confidence            3445555555555555555555555544    33444555555555555  55555555555553    44444444 44


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------------HHHhhccCCCCchHHHHHHhcCCH
Q 043188           97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------------RQMIRMTNNEKNTALHEAVCHQNV  161 (197)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~a~~~~~~  161 (197)
                      |.||||+|+..++.+++++|++.|++++..+..+.+++..+               +.+++..+..|.||||+|+..++.
T Consensus       150 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  229 (241)
T 1k1a_A          150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI  229 (241)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcH
Confidence            55555555555555555555555555544433332222211               222445899999999999999999


Q ss_pred             HHHHHHhhcCC
Q 043188          162 DVVELLTKEDP  172 (197)
Q Consensus       162 ~~~~~Ll~~g~  172 (197)
                      ++++.|.++++
T Consensus       230 ~i~~~l~~~~a  240 (241)
T 1k1a_A          230 DILRGKATRPA  240 (241)
T ss_dssp             HHHTC------
T ss_pred             HHHhhhccCCC
Confidence            99999987654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=2.4e-30  Score=191.05  Aligned_cols=170  Identities=15%  Similarity=0.072  Sum_probs=143.6

Q ss_pred             cccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCC
Q 043188           18 GEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKG   97 (197)
Q Consensus        18 ~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   97 (197)
                      ....+..|.||||+|+..|+.+++++|++.|.+++..  +|.||||+|+  ..|+.+++++|++.    +.+++.++..|
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~--~~g~~~~v~~Ll~~----ga~~~~~d~~g   95 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAA--TLEDTKIVKILLFS----GLDDSQFDDKG   95 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHT--TSSSCHHHHHHHHT----TCCTTCCCTTS
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHH--HcCCHHHHHHHHHC----CCCCCCcCCCC
Confidence            3456778999999999999999999999999988766  4899999999  99999999999986    88899999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCccchhhH-HhhHHHHH---------HHh----hccCC-CCchHHHHHHhcCCHH
Q 043188           98 DTPLHVAAKFGHSDIVRVLVERAKLPQHENEEL-ESRVGAAR---------QMI----RMTNN-EKNTALHEAVCHQNVD  162 (197)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~~~---------~~~----~~~~~-~g~t~l~~a~~~~~~~  162 (197)
                      .||||+|+..++.+++++|++.|+++......+ ..++..+.         .++    +..+. .|.||||+|+..|+.+
T Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~  175 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVD  175 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHH
Confidence            999999999999999999999999888766655 45544331         111    11233 7889999999999999


Q ss_pred             HHHHHhhcCCCcccccccCCCcH-HHHHHhcccCC
Q 043188          163 VVELLTKEDPDYQYSANNYGKTP-LYMAADYRSSN  196 (197)
Q Consensus       163 ~~~~Ll~~g~~~~~~~~~~g~tp-l~~A~~~~~~~  196 (197)
                      ++++|++.|++++ .++..|.|| ||+|+..|+.+
T Consensus       176 ~v~~Ll~~gad~n-~~~~~g~t~~L~~A~~~~~~~  209 (285)
T 3kea_A          176 MMILLLDYMTSTN-TNNSLLFIPDIKLAIDNKDIE  209 (285)
T ss_dssp             HHHHHHHHHHHTC-TTCCCBCCTTHHHHHHHTCHH
T ss_pred             HHHHHHHcCCCCC-cccCCCCChHHHHHHHcCCHH
Confidence            9999999999988 888999997 99999888753

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=1.8e-29  Score=180.26  Aligned_cols=147  Identities=20%  Similarity=0.251  Sum_probs=133.2

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHHHh-cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCC--ccccc-CCCCCCcH
Q 043188           25 IDPNLFKAAAAGNLEPFKDMAREVIERL-LTAKTKNTILHINIISQERENVSTKFVAEILEKCP--SLLLQ-VNAKGDTP  100 (197)
Q Consensus        25 ~~~~l~~a~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~--~~~~~-~~~~~~t~  100 (197)
                      |+||||.|+..|+.+.++.|++.+.+.. ..+..|.||||+|+  ..|+.+++++|++.    +  .+++. .+..|.||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----~~~~~~~~~~~~~g~t~   75 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV--SFQAHEITSFLLSK----MENVNLDDYPDDSGWTP   75 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----CTTCCGGGCCCTTSCCH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHH--HcCCHHHHHHHHhc----cccccccccCCCCCCCH
Confidence            5789999999999999999999998776 48899999999999  99999999999985    5  55555 78899999


Q ss_pred             HHHHHHhCCHHHHHHHHHcC--CCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccc
Q 043188          101 LHVAAKFGHSDIVRVLVERA--KLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSA  178 (197)
Q Consensus       101 l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  178 (197)
                      ||+|+..++.+++++|++.+  .++..                  .+..|.||||+|+..++.+++++|++.|++++ .+
T Consensus        76 L~~A~~~~~~~~~~~Ll~~g~~~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~  136 (228)
T 2dzn_A           76 FHIACSVGNLEVVKSLYDRPLKPDLNK------------------ITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IK  136 (228)
T ss_dssp             HHHHHHHCCHHHHHHHHSSSSCCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCccccc------------------CCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-cc
Confidence            99999999999999999998  65554                  88899999999999999999999999999998 99


Q ss_pred             ccCCCcHHHHHHhcccCC
Q 043188          179 NNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       179 ~~~g~tpl~~A~~~~~~~  196 (197)
                      +..|.||||+|+..|+.+
T Consensus       137 ~~~g~t~L~~A~~~~~~~  154 (228)
T 2dzn_A          137 DKFNQIPLHRAASVGSLK  154 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHH
T ss_pred             CCCCCCHHHHHHHcCCHH
Confidence            999999999999988753

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=3.4e-29  Score=181.96  Aligned_cols=157  Identities=17%  Similarity=0.086  Sum_probs=126.6

Q ss_pred             cCCHHHHHHHHcCCcHH----HHHHHHHHHHHhc----ccccCCcHHHHHHHhhh---cccccHHHHHHHHHhCCcccc-
Q 043188           24 QIDPNLFKAAAAGNLEP----FKDMAREVIERLL----TAKTKNTILHINIISQE---RENVSTKFVAEILEKCPSLLL-   91 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~----v~~Ll~~g~~~~~----~~~~g~t~lh~a~~~~~---~~~~~~~~l~~~l~~~~~~~~-   91 (197)
                      .|.|+||.|+..|+.+.    +++|++.|.+++.    .+..|.||||+|+  ..   |+.+++++|++.    +.+.+ 
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~--~~~~~g~~~~v~~Ll~~----g~~~~~   74 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAV--LNLQDGVNACIMPLLQI----DKDSGN   74 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHH--HTCBTTBCTTHHHHHHH----HHHTTC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHH--HccccchHHHHHHHHhc----CCcccc
Confidence            36799999999999984    5666668888887    7899999999999  88   999999999997    43333 


Q ss_pred             ----------cCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCH
Q 043188           92 ----------QVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNV  161 (197)
Q Consensus        92 ----------~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~  161 (197)
                                .++..|.||||+|+..++.+++++|++.|++++.........     ...+..+..|.||||+|+..|+.
T Consensus        75 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~-----~~~~~~~~~g~tpL~~A~~~~~~  149 (256)
T 2etb_A           75 PKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQ-----KHQGTCFYFGELPLSLAACTKQW  149 (256)
T ss_dssp             SSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGS-----CCSSSCCCSCSSHHHHHHHTTCH
T ss_pred             hhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccc-----ccccccccCCCCHHHHHHHcCCH
Confidence                      234679999999999999999999999999987621100000     00000112399999999999999


Q ss_pred             HHHHHHhh---cCCCcccccccCCCcHHHHHHhc
Q 043188          162 DVVELLTK---EDPDYQYSANNYGKTPLYMAADY  192 (197)
Q Consensus       162 ~~~~~Ll~---~g~~~~~~~~~~g~tpl~~A~~~  192 (197)
                      +++++|++   .|++++ .+|..|.||||+|+..
T Consensus       150 ~~v~~Ll~~~~~ga~~n-~~d~~g~TpLh~A~~~  182 (256)
T 2etb_A          150 DVVTYLLENPHQPASLE-ATDSLGNTVLHALVMI  182 (256)
T ss_dssp             HHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcC-ccCCCCCCHHHHHHHc
Confidence            99999999   999998 9999999999999983

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.96  E-value=1.2e-29  Score=182.26  Aligned_cols=150  Identities=21%  Similarity=0.135  Sum_probs=140.4

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHH-HHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREV-IERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ..+..+.+||+.|+..|+.+++++|++.| .+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.
T Consensus        72 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~----g~~~~~~~~~g~  145 (237)
T 3b7b_A           72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT--EYKHVDLVKLLLSK----GSDINIRDNEEN  145 (237)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSC
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHH--HcCCHHHHHHHHHC----CCCCCccCCCCC
Confidence            45667899999999999999999999998 677788889999999999  99999999999985    888999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccc
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSA  178 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  178 (197)
                      ||||+|+..++.+++++|++.++++..                  .+..|.||||+|+..++.+++++|+++|++++ .+
T Consensus       146 t~L~~A~~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~-~~  206 (237)
T 3b7b_A          146 ICLHWAAFSGCVDIAEILLAAKCDLHA------------------VNIHGDSPLHIAARENRYDCVVLFLSRDSDVT-LK  206 (237)
T ss_dssp             CHHHHHHHHCCHHHHHHHHTTTCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CC
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC-cc
Confidence            999999999999999999999998776                  88999999999999999999999999999998 99


Q ss_pred             ccCCCcHHHHHHhccc
Q 043188          179 NNYGKTPLYMAADYRS  194 (197)
Q Consensus       179 ~~~g~tpl~~A~~~~~  194 (197)
                      |..|.|||++|+..++
T Consensus       207 d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          207 NKEGETPLQCASLNSQ  222 (237)
T ss_dssp             CTTSCCHHHHSCTTCH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999998875

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=1.5e-29  Score=192.68  Aligned_cols=123  Identities=17%  Similarity=0.175  Sum_probs=86.6

Q ss_pred             ccccCCcHHHHHHHhhhc--ccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHH
Q 043188           54 TAKTKNTILHINIISQER--ENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELE  131 (197)
Q Consensus        54 ~~~~g~t~lh~a~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~  131 (197)
                      .+..|.||||+|+  ..|  +.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.+++...      
T Consensus       134 ~~~~g~t~L~~A~--~~g~~~~~~v~~Ll~~----ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------  201 (364)
T 3ljn_A          134 KHCKGQTALHWCV--GLGPEYLEMIKILVQL----GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS------  201 (364)
T ss_dssp             EEESCCCHHHHHH--HSCGGGHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSS------
T ss_pred             CCCCCCCHHHHHH--HcCCchHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccc------
Confidence            4445555555555  555  55555555554    555555555555555555555555555555555554100      


Q ss_pred             hhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          132 SRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       132 ~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                             .+++..+..|.||||+|+..|+.+++++|++.|++++ .+|..|.|||++|+..|+.+
T Consensus       202 -------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~g~~~  258 (364)
T 3ljn_A          202 -------LRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN-MEDNEHTVPLYLSVRAAMVL  258 (364)
T ss_dssp             -------CCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTCCHH
T ss_pred             -------ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHhChHH
Confidence                   0134588899999999999999999999999999998 99999999999999998754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=1.8e-29  Score=196.39  Aligned_cols=165  Identities=21%  Similarity=0.178  Sum_probs=102.1

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHH
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHV  103 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~  103 (197)
                      .+.+||+.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..|+.+++++|++.    +.+++..+..|.||||+
T Consensus       211 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~  284 (437)
T 1n11_A          211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA--QEGHAEMVALLLSK----QANGNLGNKSGLTPLHL  284 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HTTCHHHHHHHHTT----TCCTTCCCTTCCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HCCCHHHHHHHHhc----CCCCCCCCCCCCCHHHH
Confidence            4455555555555555555555555554444455555555555  55555555555443    44444445555555555


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------------HHHhhccCCCCchHHHHHHhcCCHHHHHHHh
Q 043188          104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------------RQMIRMTNNEKNTALHEAVCHQNVDVVELLT  168 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  168 (197)
                      |+..++.+++++|++.+.+++..+..+.+++..+               +.+++..+..|.||||+|+..|+.+++++|+
T Consensus       285 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll  364 (437)
T 1n11_A          285 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL  364 (437)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHH
Confidence            5555555555555555544444332222222211               1223458889999999999999999999999


Q ss_pred             hcCCCcccccccCCCcHHHHHHhcccC
Q 043188          169 KEDPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       169 ~~g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                      +.|++++ .+|..|.||+++|.+.|+.
T Consensus       365 ~~ga~~~-~~~~~g~t~l~~A~~~g~~  390 (437)
T 1n11_A          365 KNGASPN-EVSSDGTTPLAIAKRLGYI  390 (437)
T ss_dssp             HTTCCSC-CCCSSSCCHHHHHHHTTCH
T ss_pred             HCcCCCC-CCCCCCCCHHHHHHHcCcH
Confidence            9999988 8999999999999998864

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=7.1e-30  Score=192.55  Aligned_cols=175  Identities=15%  Similarity=0.153  Sum_probs=128.9

Q ss_pred             ccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhccc-ccCCcHHHHHHHhhhcccccHHHHHHH---------------
Q 043188           19 EISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTA-KTKNTILHINIISQERENVSTKFVAEI---------------   82 (197)
Q Consensus        19 ~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~lh~a~~~~~~~~~~~~~l~~~---------------   82 (197)
                      .....+++|+|+.|++.|++++|+.||++|++++.++ ..|.||||+|+  ..|+.+++++|++.               
T Consensus        19 ~~~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~--~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~   96 (337)
T 4g8k_A           19 RRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV--QMSREDIVELLLRHGADPVLRKKNGATPF   96 (337)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH--HTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHH--HcCCHHHHHHHHHcCCchhhhccCCCchh
Confidence            3445567899999999999999999999999998665 45899999999  99999999999874               


Q ss_pred             --------------HHhCCcccccCCC-------------------------------------------CCCcHHHHHH
Q 043188           83 --------------LEKCPSLLLQVNA-------------------------------------------KGDTPLHVAA  105 (197)
Q Consensus        83 --------------l~~~~~~~~~~~~-------------------------------------------~~~t~l~~a~  105 (197)
                                    +...+.+++.++.                                           .|.||||+|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~  176 (337)
T 4g8k_A           97 ILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA  176 (337)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHH
T ss_pred             HHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHH
Confidence                          0011112222222                                           3567777777


Q ss_pred             HhCCHHHHHHHHH-cCCCCccchhhHHhhH-------------------HHHHHHhhccCCCCchHHHHHHhcCCHHHHH
Q 043188          106 KFGHSDIVRVLVE-RAKLPQHENEELESRV-------------------GAARQMIRMTNNEKNTALHEAVCHQNVDVVE  165 (197)
Q Consensus       106 ~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  165 (197)
                      ..|+.+++++|++ .|++++..+..+...+                   ...+.+++..+..|.||||+|+..++.++++
T Consensus       177 ~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~  256 (337)
T 4g8k_A          177 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ  256 (337)
T ss_dssp             HHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred             HCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHH
Confidence            7777777777774 3666555433222111                   1223446778889999999999999999999


Q ss_pred             HHhhc-CCCcccccccCCCcHHHHHHhcccCC
Q 043188          166 LLTKE-DPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       166 ~Ll~~-g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      +|++. |++++ .+|..|.||||+|++.|+.+
T Consensus       257 ~Ll~~~~~~vn-~~d~~G~TpL~~A~~~g~~~  287 (337)
T 4g8k_A          257 RLLEQEHIEIN-DTDSDGKTALLLAVELKLKK  287 (337)
T ss_dssp             HHHTSTTCCTT-CBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHHhcCCccc-CcCCCCCCHHHHHHHcCCHH
Confidence            99974 78888 89999999999999998754

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=2.9e-29  Score=180.11  Aligned_cols=170  Identities=21%  Similarity=0.192  Sum_probs=146.1

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHh-cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERL-LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ..+..+.|+|+.|+..|+.+++++|++.|.+++ ..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.
T Consensus        37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~  110 (240)
T 3eu9_A           37 QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT--RQGHLSMVVQLMKY----GADPSLIDGEGC  110 (240)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTSC
T ss_pred             CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHH--HcCCHHHHHHHHHc----CCCCcccCCCCC
Confidence            455678899999999999999999999998877 44456999999999  99999999999885    888898999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH----------------HHHhhccCC-CCchHHHHHHhcCCH
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA----------------RQMIRMTNN-EKNTALHEAVCHQNV  161 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~-~g~t~l~~a~~~~~~  161 (197)
                      ||||+|+..++.+++++|++.+.++...+..+..++..+                +.+++..+. .|.||||+|+..++.
T Consensus       111 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~  190 (240)
T 3eu9_A          111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT  190 (240)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCH
Confidence            999999999999999999999998877665554444432                223455555 899999999999999


Q ss_pred             HHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          162 DVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       162 ~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      +++++|++.|++++ .++..|.||+++|++.|+.+
T Consensus       191 ~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~  224 (240)
T 3eu9_A          191 TVISLLLEAGANVD-AQNIKGESALDLAKQRKNVW  224 (240)
T ss_dssp             HHHHHHHHHTCCTT-CBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHH
Confidence            99999999999998 99999999999999998754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=3.9e-29  Score=184.60  Aligned_cols=164  Identities=18%  Similarity=0.164  Sum_probs=139.3

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.. ..|.|
T Consensus        87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~-~~g~t  159 (285)
T 3d9h_A           87 IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC--VSGSWDCVNLLLQH----GASVQPE-SDLAS  159 (285)
T ss_dssp             EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH--HHTCHHHHHHHHHT----TCCSSCS-CTTSC
T ss_pred             CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCHHHHHHHHHHC----CCCCCCC-CCCCC
Confidence            45678899999999999999999999999988888999999999999  99999999999885    6666653 35899


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------------HHHhhccCCCCchHHHHHHhcCCHHHH
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------------RQMIRMTNNEKNTALHEAVCHQNVDVV  164 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~a~~~~~~~~~  164 (197)
                      |||+|+..++.+++++|++.+.+++..+..+..++..+               +.+++ .+..|.||||+|+..++.+++
T Consensus       160 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~g~t~L~~A~~~~~~~~v  238 (285)
T 3d9h_A          160 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELA  238 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTBCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999999988877665554444322               22234 477899999999999999999


Q ss_pred             HHHhhcCCCcccccccCCCcHHHHHHhc
Q 043188          165 ELLTKEDPDYQYSANNYGKTPLYMAADY  192 (197)
Q Consensus       165 ~~Ll~~g~~~~~~~~~~g~tpl~~A~~~  192 (197)
                      ++|++.|++++ .+|..|+|||++|+..
T Consensus       239 ~~Ll~~gad~~-~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          239 CLLMDFGADTQ-AKNAEGKRPVELVPPE  265 (285)
T ss_dssp             HHHHHTTCCTT-CCCTTSCCGGGGSCTT
T ss_pred             HHHHHCCCCCC-CcCCCCCCHHHHhcCc
Confidence            99999999998 9999999999999844

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=8.5e-29  Score=173.56  Aligned_cols=147  Identities=20%  Similarity=0.229  Sum_probs=134.5

Q ss_pred             ccCCHHHHHHHHcCCcHHHHHHHHHHH-HHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHH
Q 043188           23 SQIDPNLFKAAAAGNLEPFKDMAREVI-ERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPL  101 (197)
Q Consensus        23 ~~~~~~l~~a~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l  101 (197)
                      +.+.++|+.|+..|+.+.++.|+..+. +++..+..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.|||
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l   76 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV--HNNDIEIAKALIDR----GADINLQNSISDSPY   76 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTSCCHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCCCCCCCCCHH
Confidence            456789999999999999999999876 78888899999999999  99999999999986    889999999999999


Q ss_pred             HHHHHhCCHHHHHHHHH-cCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcC-CCcccccc
Q 043188          102 HVAAKFGHSDIVRVLVE-RAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKED-PDYQYSAN  179 (197)
Q Consensus       102 ~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~  179 (197)
                      |+|+..++.+++++|++ .+.++..                  .+..|.||||+|+..++.+++++|++.| ++++ .++
T Consensus        77 ~~A~~~~~~~~~~~Ll~~~~~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~  137 (201)
T 3hra_A           77 LYAGAQGRTEILAYMLKHATPDLNK------------------HNRYGGNALIPAAEKGHIDNVKLLLEDGREDID-FQN  137 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCTTC------------------CCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT-CCC
T ss_pred             HHHHHcCCHHHHHHHHhccCccccc------------------ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-CCC
Confidence            99999999999999995 4555554                  8889999999999999999999999999 7877 899


Q ss_pred             cCCCcHHHHHHhccc
Q 043188          180 NYGKTPLYMAADYRS  194 (197)
Q Consensus       180 ~~g~tpl~~A~~~~~  194 (197)
                      ..|.||||+|+..++
T Consensus       138 ~~g~t~L~~A~~~~~  152 (201)
T 3hra_A          138 DFGYTALIEAVGLRE  152 (201)
T ss_dssp             TTSCCHHHHHHHSSC
T ss_pred             CCCCCHHHHHHHhcc
Confidence            999999999998775

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=2.5e-29  Score=186.41  Aligned_cols=148  Identities=18%  Similarity=0.165  Sum_probs=128.8

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCC-----
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVN-----   94 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----   94 (197)
                      ..+..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..|+.+++++|++.    +.+++.++     
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~----g~~~~~~~~~g~t  141 (299)
T 1s70_B           68 YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA--SCGYLDIAEYLISQ----GAHVGAVNSEGDT  141 (299)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHhC----CCCCCCcCCCCCC
Confidence            45667899999999999999999999999999988999999999999  99999999999885    55554444     


Q ss_pred             -------------------------------------------------------CCCCcHHHHHHHhCCHHHHHHHHHc
Q 043188           95 -------------------------------------------------------AKGDTPLHVAAKFGHSDIVRVLVER  119 (197)
Q Consensus        95 -------------------------------------------------------~~~~t~l~~a~~~~~~~~~~~ll~~  119 (197)
                                                                             ..|.||||+|+..++.+++++|++.
T Consensus       142 ~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  221 (299)
T 1s70_B          142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA  221 (299)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence                                                                   3466777788888888888888888


Q ss_pred             CCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhc
Q 043188          120 AKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY  192 (197)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~  192 (197)
                      |++++.                  .|..|.||||+|+..|+.+++++|++.|++++ .+|..|.||+++|+..
T Consensus       222 g~d~~~------------------~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          222 RYDVNI------------------KDYDGWTPLHAAAHWGKEEACRILVENLCDME-AVNKVGQTAFDVADED  275 (299)
T ss_dssp             TCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCTTTSCCSG
T ss_pred             CCCCCC------------------cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHH
Confidence            777665                  89999999999999999999999999999998 9999999999999653

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=1.9e-29  Score=166.69  Aligned_cols=131  Identities=15%  Similarity=0.090  Sum_probs=122.9

Q ss_pred             cccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCC-
Q 043188           18 GEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAK-   96 (197)
Q Consensus        18 ~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-   96 (197)
                      ....+..+.||||.|+..|+.+++++|++.|.+++.++..|.||||+|+  . ++.+++++|++.    +.+++.++.. 
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~-~~~~~v~~Ll~~----g~~~~~~~~~~   77 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM--M-GSAQVAELLLLH----GAEPNCADPAT   77 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTST--T-SCHHHHHHHHHH----TCCSSCCBTTT
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHH--c-CCHHHHHHHHHC----CCCCCCcCCCC
Confidence            3456678899999999999999999999999999989999999999999  9 999999999997    8889999999 


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCC
Q 043188           97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPD  173 (197)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  173 (197)
                      |.||||+|+..++.+++++|++.++++..                  .+..|.||||+|+..++.+++++|+++|+|
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------------------~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARLDV------------------CDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCCCC------------------CSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999876                  899999999999999999999999999875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=8.1e-29  Score=181.65  Aligned_cols=169  Identities=18%  Similarity=0.179  Sum_probs=130.7

Q ss_pred             ccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHh--------cccccCCcHHHHHHHhhh---cccccHHHHHHHHHhCC
Q 043188           19 EISQSQIDPNLFKAAAAGNLEPFKDMAREVIERL--------LTAKTKNTILHINIISQE---RENVSTKFVAEILEKCP   87 (197)
Q Consensus        19 ~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~--------~~~~~g~t~lh~a~~~~~---~~~~~~~~l~~~l~~~~   87 (197)
                      ...+..+.|+||.|+..|+.+.|+.|++.+.+..        ..+..|.||||+|+  ..   |+.+++++|++......
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~--~~~~~g~~~~v~~Ll~~ga~~~   84 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM--LNLHNGQNDTIALLLDVARKTD   84 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHH--HSCBTTBCHHHHHHHHHHHHTT
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHH--HHHhcCChHHHHHHHHhhcccc
Confidence            3466788999999999999999999999876543        24779999999999  76   99999999999732211


Q ss_pred             -------cccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCC
Q 043188           88 -------SLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQN  160 (197)
Q Consensus        88 -------~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~  160 (197)
                             .....++..|.||||+|+..++.+++++|++.|+++..........    .......+..|.||||+|+..++
T Consensus        85 ~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~----~~~~~~~~~~g~tpL~~A~~~g~  160 (273)
T 2pnn_A           85 SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK----KTKGRPGFYFGELPLSLAACTNQ  160 (273)
T ss_dssp             CHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGS----SCSSSCCCCSCBSHHHHHHHTTC
T ss_pred             chhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccc----cccccccccCCCCHHHHHHHcCC
Confidence                   1122256689999999999999999999999999987621100000    00000111379999999999999


Q ss_pred             HHHHHHHhh---cCCCcccccccCCCcHHHHHHhccc
Q 043188          161 VDVVELLTK---EDPDYQYSANNYGKTPLYMAADYRS  194 (197)
Q Consensus       161 ~~~~~~Ll~---~g~~~~~~~~~~g~tpl~~A~~~~~  194 (197)
                      .+++++|++   .|++++ .+|..|.||||+|+..|+
T Consensus       161 ~~~v~~Ll~~~~~gad~~-~~d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          161 LAIVKFLLQNSWQPADIS-ARDSVGNTVLHALVEVAD  196 (273)
T ss_dssp             HHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCC
T ss_pred             HHHHHHHHhcccCCCCce-eeCCCCCcHHHHHHHccC
Confidence            999999999   999998 999999999999998775

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=2.8e-29  Score=184.39  Aligned_cols=173  Identities=17%  Similarity=0.133  Sum_probs=128.7

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHH---------------
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILE---------------   84 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~---------------   84 (197)
                      ..+..|.||||+|+..|+.+++++|+++|.+++.++..|.||||+|+  ..++.+++++|++...               
T Consensus        40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  117 (282)
T 1oy3_D           40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC--RVRAHTCACVLLQPRPSHPRDASDTYLTQSQ  117 (282)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT--TTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcCCcchhHhhhccCCCCchhhHHHHhhccc
Confidence            45667889999999999999999999999999888889999999999  9999999888876300               


Q ss_pred             ----------------------------hCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhh-HHhhHH
Q 043188           85 ----------------------------KCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEE-LESRVG  135 (197)
Q Consensus        85 ----------------------------~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~  135 (197)
                                                  ..+..++.++..|.||||+|+..++.+++++|++.|+++...... +.+++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~  197 (282)
T 1oy3_D          118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH  197 (282)
T ss_dssp             --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             ccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHH
Confidence                                        011347778888999999999999999999999988887776532 333333


Q ss_pred             H---------------HHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccC
Q 043188          136 A---------------ARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       136 ~---------------~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                      .               .+.+++..+..|.||||+|+..++.+++++|+++|++++ .++..|.||+++|......
T Consensus       198 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP-EDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC-CCC----------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcC-cCCCcccccccccCCcccc
Confidence            2               234467789999999999999999999999999999998 9999999999999876553

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=6.4e-31  Score=188.35  Aligned_cols=152  Identities=20%  Similarity=0.171  Sum_probs=134.7

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcH
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTP  100 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~  100 (197)
                      ....+.++|+.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~--~~g~~~~v~~Ll~~----ga~~n~~d~~g~tp   90 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI--CGANYSIVDFLITA----GANVNSPDSHGWTP   90 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTCCCH
T ss_pred             cccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHC----CCCCCCCCCCCCCH
Confidence            4456678999999999999999999999999999999999999999  99999999999986    89999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccC-CCCchHHHHH--HhcCCHHHHHHHhhcCCCcc--
Q 043188          101 LHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTN-NEKNTALHEA--VCHQNVDVVELLTKEDPDYQ--  175 (197)
Q Consensus       101 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~g~~~~--  175 (197)
                      ||+|+..++.+++++|++.|+++..                  .+ ..|.||||+|  +..++.+++++|++.|++++  
T Consensus        91 Lh~A~~~g~~~~v~~Ll~~ga~~~~------------------~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~  152 (229)
T 2vge_A           91 LHCAASCNDTVICMALVQHGAAIFA------------------TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM  152 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTTC------------------CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccc------------------ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc
Confidence            9999999999999999999999876                  54 6999999999  99999999999999765542  


Q ss_pred             -----------------------------cccccCCCcHHHHHHhcccCC
Q 043188          176 -----------------------------YSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       176 -----------------------------~~~~~~g~tpl~~A~~~~~~~  196 (197)
                                                   +.+|..|.||||+|+..|+.+
T Consensus       153 ~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~  202 (229)
T 2vge_A          153 NSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEG  202 (229)
T ss_dssp             GGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEE
T ss_pred             cCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcc
Confidence                                         145667888888888877654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=1.2e-29  Score=193.22  Aligned_cols=169  Identities=18%  Similarity=0.230  Sum_probs=126.3

Q ss_pred             ccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           19 EISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        19 ~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ...+..+.|+||+|+..|+.++|++|++.|.+++..+..|.||||+|+  ..|+.+++++|++.    +...+  +..|.
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~----g~~~~--~~~g~   85 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC--KFGCVDTAKYLASV----GEVHS--LWHGQ   85 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HHCCHHHHHHHHHH----CCCCC--CBTTB
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHH--HcCCHHHHHHHHHC----CCCcc--ccCCC
Confidence            345677888888888888888888888888888888888888888888  88888888888886    54332  23567


Q ss_pred             cHHHHHHHhCCHHHHHHHHHc----CCCCcc-----------------ch-----------------hhHHhhHHHHHHH
Q 043188           99 TPLHVAAKFGHSDIVRVLVER----AKLPQH-----------------EN-----------------EELESRVGAARQM  140 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~----~~~~~~-----------------~~-----------------~~~~~~~~~~~~~  140 (197)
                      ||||+|+..++.+++++|++.    +..+..                 .+                 .+.-..+...+.+
T Consensus        86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~  165 (364)
T 3ljn_A           86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS  165 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence            777777777777777777776    433322                 11                 1111112222344


Q ss_pred             hhccCCCCchHHHHHHhcCCHHHHHHHhhcCCC-----cccccccCCCcHHHHHHhcccCC
Q 043188          141 IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPD-----YQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       141 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      ++..+..|.||||+|+..|+.+++++|++.|++     ++ ..+..|.||||+|+..|+.+
T Consensus       166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~g~t~L~~A~~~g~~~  225 (364)
T 3ljn_A          166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD-YANKQGNSHLHWAILINWED  225 (364)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT-CCCTTCCCTTHHHHTTTCHH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc-ccCCCCCcHHHHHHHcCCHH
Confidence            566888999999999999999999999999998     77 88999999999999988754

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=2.1e-30  Score=186.22  Aligned_cols=158  Identities=23%  Similarity=0.263  Sum_probs=134.3

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHH----HhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIE----RLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNA   95 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~----~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~   95 (197)
                      ..+..|.||||.|+..|+.++++.|++.+..    ++..+..|.||||+|+  ..|+.+++++|++.    +.+++.++.
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~   76 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV--ITNQPEIAEALLGA----GCDPELRDF   76 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHH--HTTCHHHHHCCCSC----CCCSCCCCT
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCCcCC
Confidence            3467889999999999999999999998773    5678889999999999  99999999999885    889999999


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcc
Q 043188           96 KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQ  175 (197)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  175 (197)
                      .|.||||+|+..++.+++++|++.+......            ..++..+..|.||||+|+..++.+++++|++.|++++
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  144 (236)
T 1ikn_D           77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLH------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN  144 (236)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccchhHH------------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999999998753210            1134578899999999999999999999999999998


Q ss_pred             ccccc-CCCcHHHHHHhcccCC
Q 043188          176 YSANN-YGKTPLYMAADYRSSN  196 (197)
Q Consensus       176 ~~~~~-~g~tpl~~A~~~~~~~  196 (197)
                       .++. .|.||||+|+..|+.+
T Consensus       145 -~~~~~~g~tpL~~A~~~~~~~  165 (236)
T 1ikn_D          145 -AQEPCNGRTALHLAVDLQNPD  165 (236)
T ss_dssp             -CCCTTTCCCHHHHHHHTTCHH
T ss_pred             -CCCCCCCCCHHHHHHHcCCHH
Confidence             7776 9999999999988753

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=7.2e-29  Score=182.19  Aligned_cols=167  Identities=16%  Similarity=0.126  Sum_probs=104.1

Q ss_pred             cccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHH
Q 043188           22 QSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPL  101 (197)
Q Consensus        22 ~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l  101 (197)
                      +..+.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.|||
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L  109 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA--IAGSVKLLKLFLSK----GADVNECDFYGFTAF  109 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HHTCHHHHHHHHHT----TCCTTCBCTTCCBHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCccCcccCCHH
Confidence            445667777777777777777777777766666667777777777  77777777777664    566666666666666


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCccc--------------------------------------------hhhHHhhHH--
Q 043188          102 HVAAKFGHSDIVRVLVERAKLPQHE--------------------------------------------NEELESRVG--  135 (197)
Q Consensus       102 ~~a~~~~~~~~~~~ll~~~~~~~~~--------------------------------------------~~~~~~~~~--  135 (197)
                      |+|+..++.+++++|++.+.++...                                            +..+..++.  
T Consensus       110 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a  189 (285)
T 1wdy_A          110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA  189 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            6666666666666666666554432                                            111111111  


Q ss_pred             -----------------HHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhh-cCCCcccccccCCCcHHHHHHhcccC
Q 043188          136 -----------------AARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK-EDPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       136 -----------------~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                                       ..+.+++..+..|.||||+|+..++.+++++|++ .|++++ .+|..|.|||++|+..|+.
T Consensus       190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~~~~g~t~l~~A~~~~~~  266 (285)
T 1wdy_A          190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELKLK  266 (285)
T ss_dssp             HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred             HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc-ccCCCCCcHHHHHHHcCcH
Confidence                             1112234455566666666666666666666666 566665 6666666666666666553

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=2.7e-29  Score=180.97  Aligned_cols=147  Identities=17%  Similarity=0.056  Sum_probs=104.8

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHH
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHV  103 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~  103 (197)
                      .|.|+|+.|+..|+.+.++.|+++|.+++.. ..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~--~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~L~~   76 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSS--LEGEFDLVQRIIYE----VDDPSLPNDEGITALHN   76 (239)
T ss_dssp             ----------------------------------CHHHHHHHH--HHTCHHHHHHHTST----TSSCCCCCTTSCCHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHH--HcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHH
Confidence            5789999999999999999999999998865 47899999999  99999999999885    78899999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCC
Q 043188          104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGK  183 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  183 (197)
                      |+..++.+++++|+++|++++.                  .|..|.||||+|+..++.+++++|++.|++++ .++..|.
T Consensus        77 A~~~g~~~~v~~Ll~~ga~~~~------------------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~  137 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVNVNA------------------ADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDM  137 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSSC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-eecCCCC
Confidence            9999999999999999998776                  89999999999999999999999999999998 7777666


Q ss_pred             -cHHHHH--HhcccCC
Q 043188          184 -TPLYMA--ADYRSSN  196 (197)
Q Consensus       184 -tpl~~A--~~~~~~~  196 (197)
                       ||+|+|  +..|+.+
T Consensus       138 ~t~l~~a~~~~~g~~~  153 (239)
T 1ycs_B          138 QTAADKCEEMEEGYTQ  153 (239)
T ss_dssp             CCHHHHCCSSSTTCCC
T ss_pred             cchHHHHHHhhhccHH
Confidence             999999  6666654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=8.1e-29  Score=192.72  Aligned_cols=170  Identities=22%  Similarity=0.249  Sum_probs=136.2

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..|.||||.|+..|+.++|++|+++|.+++..+..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.|
T Consensus         9 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~----g~~~~~~~~~g~t   82 (437)
T 1n11_A            9 GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA--RAGHTEVAKYLLQN----KAKVNAKAKDDQT   82 (437)
T ss_dssp             ------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHH--HHTCHHHHHHHHHH----TCCSSCCCTTSCC
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHhC----CCCCCCCCCCCCC
Confidence            34567888899999999999999999988888888888899999999  88999999888886    7888888888899


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------------HHHhhccCCCCchHHHHHHhcCCHHHH
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------------RQMIRMTNNEKNTALHEAVCHQNVDVV  164 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~a~~~~~~~~~  164 (197)
                      |||+|+..|+.+++++|+++|+++......+..++..+               +...+..+..|.||||+|+..|+.+++
T Consensus        83 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  162 (437)
T 1n11_A           83 PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA  162 (437)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999998888776555444433322               112344577899999999999999999


Q ss_pred             HHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          165 ELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       165 ~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      ++|++.|++++ ..+..|.|||++|+..|+.+
T Consensus       163 ~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~  193 (437)
T 1n11_A          163 ELLLERDAHPN-AAGKNGLTPLHVAVHHNNLD  193 (437)
T ss_dssp             HHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHH
T ss_pred             HHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHH
Confidence            99999999988 88899999999999988754

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=1.8e-29  Score=170.61  Aligned_cols=145  Identities=14%  Similarity=0.028  Sum_probs=116.9

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      .+...+.++||.|+..|+.+++++|+++|.+++..+..|.||||+|+   .++.+++++|++.    +.+++.++..|.|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~v~~Ll~~----g~~~~~~d~~g~t   79 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM---MGSARVAELLLLH----GAEPNCADPATLT   79 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC---TTCHHHHHHHHTT----TCCCCCCCTTTCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH---cCCHHHHHHHHHc----CCCCCCcCCCCCc
Confidence            45667889999999999999999999999999999999999999964   6889999999885    8899999999999


Q ss_pred             -HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccc
Q 043188          100 -PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSA  178 (197)
Q Consensus       100 -~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  178 (197)
                       |||+|+..++.+++++|+++|+++..                  .+..|.||||+|+..++.+++++|+++|++++ .+
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~ga~~~~------------------~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~-~~  140 (156)
T 1bi7_B           80 RPVHDAAREGFLDTLVVLHRAGARLDV------------------RDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-GS  140 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSSC------------------CCTTCCCHHHHHHHHTCHHHHHHHSSCC-------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCCcc------------------cCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC-cc
Confidence             99999999999999999999999876                  89999999999999999999999999999998 99


Q ss_pred             ccCCCcHHHHHH
Q 043188          179 NNYGKTPLYMAA  190 (197)
Q Consensus       179 ~~~g~tpl~~A~  190 (197)
                      +..|.||.+-+.
T Consensus       141 ~~~g~t~~~~~~  152 (156)
T 1bi7_B          141 NHARIDAAEGPS  152 (156)
T ss_dssp             ------------
T ss_pred             CcCcCcccccCC
Confidence            999999987543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=1.7e-28  Score=187.53  Aligned_cols=173  Identities=13%  Similarity=0.127  Sum_probs=141.5

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..|.||||+|+..|+.++|++|++.|.+++..+..|.||||+|+  ..|+.+++++|++... .+.+++..+..|.|
T Consensus       161 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~-~~~~~~~~d~~g~t  237 (373)
T 2fo1_E          161 AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAA--ANRDFGMMVYMLNSTK-LKGDIEELDRNGMT  237 (373)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH--HTTCHHHHHHHTTSHH-HHHTTSCCCTTSCC
T ss_pred             CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHH--HCCCHHHHHHHHhcCc-cccChhhcCCCCCC
Confidence            45678889999999999999999999999988888889999999999  9999999999887411 01567888888999


Q ss_pred             HHHHHHHhC---CHHHHHHHHHcCCCCccch--------hhHHhhHH---------------HH-HHHhhccCCCCchHH
Q 043188          100 PLHVAAKFG---HSDIVRVLVERAKLPQHEN--------EELESRVG---------------AA-RQMIRMTNNEKNTAL  152 (197)
Q Consensus       100 ~l~~a~~~~---~~~~~~~ll~~~~~~~~~~--------~~~~~~~~---------------~~-~~~~~~~~~~g~t~l  152 (197)
                      |||+|+..+   +.+++++|++.|+++....        ..+..++.               .. +.+++..|..|.|||
T Consensus       238 ~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL  317 (373)
T 2fo1_E          238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI  317 (373)
T ss_dssp             HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred             HHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHH
Confidence            999998887   7888999999888776421        11111221               11 245667889999999


Q ss_pred             HHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          153 HEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       153 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      |+|+..|+.+++++|++.|++++ .+|..|.|||++|+..|+.+
T Consensus       318 ~~A~~~g~~~iv~~Ll~~gad~~-~~d~~g~t~l~~A~~~g~~~  360 (373)
T 2fo1_E          318 MLAAQEGRIEVVMYLIQQGASVE-AVDATDHTARQLAQANNHHN  360 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSS-CCCSSSCCHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcc-CCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999998 89999999999999998754

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=9.5e-29  Score=169.44  Aligned_cols=141  Identities=17%  Similarity=0.106  Sum_probs=126.5

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..+.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t  104 (172)
T 3v30_A           31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAS--TGGYTDIVGLLLER----DVDINIYDWNGGT  104 (172)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH--HTTCHHHHHHHHTT----TCCTTCCCTTSCC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHH--HCCCHHHHHHHHHc----CCCCCCCCCCCCC
Confidence            35678899999999999999999999999999999999999999999  99999999999885    8889999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccc
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSAN  179 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  179 (197)
                      |||+|+..++.+++++|++.|+++..                  .+..|.||||+|+..++.+++++|+++|++.. .++
T Consensus       105 ~L~~A~~~~~~~~v~~Ll~~ga~~~~------------------~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~-~~~  165 (172)
T 3v30_A          105 PLLYAVRGNHVKCVEALLARGADLTT------------------EADSGYTPMDLAVALGYRKVQQVIENHILKLF-QSN  165 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS-CC-
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccc------------------cCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh-ccc
Confidence            99999999999999999999998776                  89999999999999999999999999999987 788


Q ss_pred             cCCCcH
Q 043188          180 NYGKTP  185 (197)
Q Consensus       180 ~~g~tp  185 (197)
                      ..+.||
T Consensus       166 ~~~~~p  171 (172)
T 3v30_A          166 LVPADP  171 (172)
T ss_dssp             ------
T ss_pred             CCCCCC
Confidence            888887

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.95  E-value=4.8e-28  Score=182.77  Aligned_cols=151  Identities=21%  Similarity=0.117  Sum_probs=119.8

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHH-----------------
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI-----------------   82 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~-----------------   82 (197)
                      ..+..|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.                 
T Consensus        86 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~  163 (351)
T 3utm_A           86 AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA--SKNRVEVCSLLLSHGADPTLVNCHGKSAVDM  163 (351)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCCccccCCCCcchHH
Confidence            45667889999999999999999999999888888888999999999  88888888887763                 


Q ss_pred             ---------------------------------------------------------------------HHhCCcccccC
Q 043188           83 ---------------------------------------------------------------------LEKCPSLLLQV   93 (197)
Q Consensus        83 ---------------------------------------------------------------------l~~~~~~~~~~   93 (197)
                                                                                           +...+.+++.+
T Consensus       164 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~  243 (351)
T 3utm_A          164 APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK  243 (351)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCC
T ss_pred             HhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCc
Confidence                                                                                 11223444445


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCC
Q 043188           94 NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPD  173 (197)
Q Consensus        94 ~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  173 (197)
                      +..|.||||+|+..++.+++++|++.|++++                  ..+..|.||||+|+..++.+++++|++.|++
T Consensus       244 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n------------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad  305 (351)
T 3utm_A          244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMN------------------ALDSLGQTALHRAALAGHLQTCRLLLSYGSD  305 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------------------CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            5555555555555555555555555555544                  4899999999999999999999999999999


Q ss_pred             cccccccCCCcHHHHHHh
Q 043188          174 YQYSANNYGKTPLYMAAD  191 (197)
Q Consensus       174 ~~~~~~~~g~tpl~~A~~  191 (197)
                      ++ .+|..|.||+++|..
T Consensus       306 ~~-~~~~~g~tal~~a~~  322 (351)
T 3utm_A          306 PS-IISLQGFTAAQMGNE  322 (351)
T ss_dssp             TT-CCCTTSCCHHHHSCH
T ss_pred             CC-CcCCCCCChhhhhhH
Confidence            98 999999999999844

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=1.5e-28  Score=180.47  Aligned_cols=148  Identities=17%  Similarity=0.151  Sum_probs=136.8

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcc-cccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHH
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLT-AKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLH  102 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~  102 (197)
                      ++.++|+.|+..|+.+.+++|++.|.+++.. +..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~   77 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV--QMSREDIVELLLRH----GADPVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTCCCHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH--HcCCHHHHHHHHHc----CCCCcccCCCCCCHHH
Confidence            4678999999999999999999999988855 788999999999  99999999999986    8889999999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccc----
Q 043188          103 VAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSA----  178 (197)
Q Consensus       103 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~----  178 (197)
                      +|+..++.+++++|++.|+++..                  .+..|.||||+|+..++.+++++|++.|++++ ..    
T Consensus        78 ~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~  138 (285)
T 1wdy_A           78 LAAIAGSVKLLKLFLSKGADVNE------------------CDFYGFTAFMEAAVYGKVKALKFLYKRGANVN-LRRKTK  138 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTC------------------BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCc------------------cCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc-cccccH
Confidence            99999999999999999998775                  88999999999999999999999999999987 55    


Q ss_pred             ------ccCCCcHHHHHHhcccCC
Q 043188          179 ------NNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       179 ------~~~g~tpl~~A~~~~~~~  196 (197)
                            +..|.||||+|+..|+.+
T Consensus       139 ~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T 1wdy_A          139 EDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             HHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             HHHHhhccCCCcHHHHHHHcCCHH
Confidence                  778999999999988753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=1.1e-27  Score=155.71  Aligned_cols=126  Identities=26%  Similarity=0.305  Sum_probs=119.1

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHH
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHV  103 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~  103 (197)
                      .|.|+|+.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~l~~   74 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA--RNGHLEVVKLLLEA----GADVNAKDKNGRTPLHL   74 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHH--HcCcHHHHHHHHHc----CCCCcccCCCCCcHHHH
Confidence            3788999999999999999999999998888999999999999  99999999999885    88899999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCC
Q 043188          104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPD  173 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  173 (197)
                      |+..++.+++++|++.++++..                  .+..|.||||+|+..++.+++++|++.|++
T Consensus        75 A~~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           75 AARNGHLEVVKLLLEAGADVNA------------------KDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHcChHHHHHHHHHcCCCCcc------------------cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999998765                  889999999999999999999999999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=5.1e-28  Score=159.78  Aligned_cols=127  Identities=23%  Similarity=0.229  Sum_probs=117.8

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcH
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTP  100 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~  100 (197)
                      ....+.++||+|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~d~~g~t~   83 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLAT--AHGHLEIVEVLLKN----GADVNAVDAIGFTP   83 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTCCCH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCcCCCCCCCH
Confidence            4556789999999999999999999999999989999999999999  99999999999985    88899999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcC
Q 043188          101 LHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKED  171 (197)
Q Consensus       101 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  171 (197)
                      ||+|+..++.+++++|++.|+++..                  .+..|.||||+|+..++.+++++|++.|
T Consensus        84 L~~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           84 LHLAAFIGHLEIAEVLLKHGADVNA------------------QDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcC------------------cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999998776                  8999999999999999999999999876

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=5.2e-29  Score=172.91  Aligned_cols=144  Identities=12%  Similarity=0.111  Sum_probs=125.1

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHHHhccc-ccCCcHHHHHHHhhhccc----ccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           25 IDPNLFKAAAAGNLEPFKDMAREVIERLLTA-KTKNTILHINIISQEREN----VSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        25 ~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~lh~a~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      +.++|+.|++.|+++.++.++..+.  +..+ ..|.||||+|+  ..++.    +++++|++.    |++++.++..|.|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~--~~~~~~~~~~iv~~Ll~~----Gadvn~~d~~g~T   77 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVL--RNNNDEARYKISMFLINK----GADIKSRTKEGTT   77 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHT--TCSCHHHHHHHHHHHHHT----TCCSSCCCTTCCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHH--HcCCcchHHHHHHHHHHC----CCCCCCCCCCCCc
Confidence            3467999999999999999998664  3344 68999999999  87764    467777774    9999999999999


Q ss_pred             HHHHHHHhCC------HHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCc-hHHHHHHhcC-----CHHHHHHH
Q 043188          100 PLHVAAKFGH------SDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN-TALHEAVCHQ-----NVDVVELL  167 (197)
Q Consensus       100 ~l~~a~~~~~------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~l~~a~~~~-----~~~~~~~L  167 (197)
                      |||+|+..++      .+++++|+++|++++.                  .|..|. ||||+|+..+     ..+++++|
T Consensus        78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~------------------~d~~g~ttpLh~A~~~~~~~~~~~~iv~~L  139 (186)
T 3t8k_A           78 LFFPLFQGGGNDITGTTELCKIFLEKGADITA------------------LYKPYKIVVFKNIFNYFVDENEMIPLYKLI  139 (186)
T ss_dssp             THHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS------------------CBGGGTBCTTGGGGGCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc------------------cCCCcCchHHHHHHHcCCChhhHHHHHHHH
Confidence            9999999987      4789999999999887                  899999 9999999844     45799999


Q ss_pred             hh-cCCCcccccccCCCcHHHHHHhcccC
Q 043188          168 TK-EDPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       168 l~-~g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                      ++ .|++++ .+|..|.||||+|++.|+.
T Consensus       140 l~~~gad~~-~~d~~G~TpL~~A~~~~~~  167 (186)
T 3t8k_A          140 FSQSGLQLL-IKDKWGLTALEFVKRCQKP  167 (186)
T ss_dssp             HTSTTCCTT-CCCTTSCCHHHHHHTTTCH
T ss_pred             HHhcCCCCc-ccCCCCCCHHHHHHHcCCH
Confidence            99 999998 9999999999999998864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=2.3e-27  Score=170.19  Aligned_cols=149  Identities=21%  Similarity=0.239  Sum_probs=122.9

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccC-CCCCCc
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQV-NAKGDT   99 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~t   99 (197)
                      .++.+.++|+.|+..|+.+.+++|++.|.+++..+..|.||||+|+  ..|+.+++++|++.    +...+.. +..|.|
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----~~~~~~~~~~~~~t   78 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAA--INNRIDLVKYYISK----GAIVDQLGGDLNST   78 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCBTTTTBC
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHH--HhCCHHHHHHHHHc----CCcchhhcCCcCCC
Confidence            3556778999999999999999999999998888999999999999  99999999999985    5555544 455999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccc
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSAN  179 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  179 (197)
                      |||+|+..++.+++++|++.++++..                  .+..|.||||+|+..++.+++++|++.|+++. .++
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~  139 (240)
T 3eu9_A           79 PLHWATRQGHLSMVVQLMKYGADPSL------------------IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMD  139 (240)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred             hhHHHHHcCCHHHHHHHHHcCCCCcc------------------cCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccC
Confidence            99999999999999999999998776                  66667777777777777777777777777766 666


Q ss_pred             cCCCcHHHHHHhccc
Q 043188          180 NYGKTPLYMAADYRS  194 (197)
Q Consensus       180 ~~g~tpl~~A~~~~~  194 (197)
                      ..|.|||++|+..+.
T Consensus       140 ~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A          140 QNGMTPLMWAAYRTH  154 (240)
T ss_dssp             TTSCCHHHHHHHHCC
T ss_pred             CCCCcHHHHHHHhCC
Confidence            667777777765544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=1.6e-27  Score=173.49  Aligned_cols=153  Identities=21%  Similarity=0.242  Sum_probs=128.1

Q ss_pred             ccCCHHHHHHHHcCCcHHHHHHHH----HHHHHhccc----ccCCcHHHHHHHh-hhcccccHHHHHHHHHhC-------
Q 043188           23 SQIDPNLFKAAAAGNLEPFKDMAR----EVIERLLTA----KTKNTILHINIIS-QERENVSTKFVAEILEKC-------   86 (197)
Q Consensus        23 ~~~~~~l~~a~~~g~~~~v~~Ll~----~g~~~~~~~----~~g~t~lh~a~~~-~~~~~~~~~~l~~~l~~~-------   86 (197)
                      ..+.++|+.|+..|+.+.++.|++    .|.+++..+    ..|.||||+|+.. +.|+.+++++|++.....       
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            356789999999999997666666    777776444    6699999999832 359999999999973221       


Q ss_pred             CcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccC--------------CCCchHH
Q 043188           87 PSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTN--------------NEKNTAL  152 (197)
Q Consensus        87 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~t~l  152 (197)
                      ....+..+..|.||||+|+..++.+++++|++.|++++.                  .+              ..|.|||
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~------------------~~~~~~~~~~~~~~~~~~g~tpL  144 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA------------------QARGRFFQPKDEGGYFYFGELPL  144 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCEECCCSSSCCCCSCCSCSSHH
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc------------------cccccccCcccccccccCCCCHH
Confidence            123444566899999999999999999999999999876                  55              6899999


Q ss_pred             HHHHhcCCHHHHHHHhh---cCCCcccccccCCCcHHHHHHhccc
Q 043188          153 HEAVCHQNVDVVELLTK---EDPDYQYSANNYGKTPLYMAADYRS  194 (197)
Q Consensus       153 ~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~~g~tpl~~A~~~~~  194 (197)
                      |+|+..|+.+++++|++   .|++++ .+|..|.||||+|+..++
T Consensus       145 ~~A~~~g~~~~v~~Ll~~~~~ga~~~-~~d~~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          145 SLAACTNQPHIVHYLTENGHKQADLR-RQDSRGNTVLHALVAIAD  188 (260)
T ss_dssp             HHHHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHhccccCCCCc-ccCCCCCcHHHHHHHhcc
Confidence            99999999999999999   999998 999999999999997665

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.95  E-value=3.3e-28  Score=185.94  Aligned_cols=150  Identities=17%  Similarity=0.131  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHc
Q 043188           40 PFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVER  119 (197)
Q Consensus        40 ~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~  119 (197)
                      .++.|++.|.+++..|..|.||||+|+  ..|+.+++++|++.    +++++.++..|.||||+|+..++.+++++|++.
T Consensus       148 ~~~~ll~~ga~vn~~d~~g~TpL~~A~--~~g~~~iv~~Ll~~----ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  221 (373)
T 2fo1_E          148 EAKECIAAGADVNAMDCDENTPLMLAV--LARRRRLVAYLMKA----GADPTIYNKSERSALHQAAANRDFGMMVYMLNS  221 (373)
T ss_dssp             HHHHHHHTCCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTS
T ss_pred             HHHHHHhcCCCCcCCCCCCCCHHHHHH--HcChHHHHHHHHHC----CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence            357788999999999999999999999  99999999999986    889999999999999999999999999999987


Q ss_pred             C---CCCccchhhHHhhHHH------------------HHHHhh--------ccCCCCchHHHHHHhcCCHHHHHHHhhc
Q 043188          120 A---KLPQHENEELESRVGA------------------ARQMIR--------MTNNEKNTALHEAVCHQNVDVVELLTKE  170 (197)
Q Consensus       120 ~---~~~~~~~~~~~~~~~~------------------~~~~~~--------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  170 (197)
                      +   .++...+..+..++..                  .+..++        ..+..|.||||+|+..|+.+++++|++.
T Consensus       222 ~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  301 (373)
T 2fo1_E          222 TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE  301 (373)
T ss_dssp             HHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH
T ss_pred             CccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHh
Confidence            6   4555444333222221                  112222        2466899999999999999999999987


Q ss_pred             C-CCcccccccCCCcHHHHHHhcccCC
Q 043188          171 D-PDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       171 g-~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      + ++++ .+|..|.||||+|+..|+.+
T Consensus       302 ~~~~~n-~~d~~g~TpL~~A~~~g~~~  327 (373)
T 2fo1_E          302 KGSNKD-KQDEDGKTPIMLAAQEGRIE  327 (373)
T ss_dssp             SCCCTT-CCCTTCCCHHHHHHHHTCHH
T ss_pred             cCCCcc-CcCCCCCCHHHHHHHcCCHH
Confidence            6 8888 99999999999999998754

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=3e-27  Score=160.33  Aligned_cols=129  Identities=22%  Similarity=0.191  Sum_probs=119.3

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..+.||||.|+. |+.+++++|++.|.+++.++..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus        33 ~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t  105 (162)
T 1ihb_A           33 AQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAA--RAGFLDTLQTLLEF----QADVNIEDNEGNL  105 (162)
T ss_dssp             CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCCcCCCCCC
Confidence            456789999999999 9999999999999999999999999999999  99999999999986    8889999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCC-ccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCC
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLP-QHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPD  173 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  173 (197)
                      |||+|+..++.+++++|++.+++. ..                  .+..|.||||+|+..++.+++++|+++|++
T Consensus       106 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~------------------~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          106 PLHLAAKEGHLRVVEFLVKHTASNVGH------------------RNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCC------------------cCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999999874 43                  889999999999999999999999999985

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.94  E-value=1.5e-27  Score=177.28  Aligned_cols=140  Identities=20%  Similarity=0.208  Sum_probs=121.9

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHHHhc------ccccCCcHHHHHHHhhh---cccccHHHHHHHHHhCCcccccCCC
Q 043188           25 IDPNLFKAAAAGNLEPFKDMAREVIERLL------TAKTKNTILHINIISQE---RENVSTKFVAEILEKCPSLLLQVNA   95 (197)
Q Consensus        25 ~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~------~~~~g~t~lh~a~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~   95 (197)
                      ..++|+.|+..|+++.++.|++.|.+++.      .+..|.||||+|+  ..   ++.+++++|++.    +++++.++.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~--~~~~~~~~~iv~~Ll~~----gadvn~~d~  224 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAV--KVANQASLPLVDFIIQN----GGHLDAKAA  224 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHH--HTCCTTTHHHHHHHHHH----SSCTTCCCT
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHH--HhcccCcHHHHHHHHhc----CCCCCCCCC
Confidence            34679999999999999999999998886      6889999999999  76   788999999987    889999999


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcc
Q 043188           96 KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQ  175 (197)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  175 (197)
                      .|.||||+|+..++.+++++|++.|+++..                  .|..|.||||+|+..++.+++++|++.|++  
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~------------------~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--  284 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRALVGT------------------VNEAGETALDIARKKHHKECEELLEQAQAG--  284 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCCSC------------------CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--
Confidence            999999999999999999999999999876                  899999999999999999999999988765  


Q ss_pred             cccccCCCcHHHHHHhcccC
Q 043188          176 YSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       176 ~~~~~~g~tpl~~A~~~~~~  195 (197)
                           .|.||||+|+..|+.
T Consensus       285 -----~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 -----TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             -----TTSSCCC--------
T ss_pred             -----CCCChhHHHHhcCCc
Confidence                 478999999999874

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=1e-26  Score=175.27  Aligned_cols=151  Identities=19%  Similarity=0.165  Sum_probs=130.5

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHH-HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMARE-VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ..+..|.||||+|+..|+.++|+.|+++ |.+++.++..|.|++|+++  ..+....+..++++|.+.+++++.++..|.
T Consensus       163 ~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~--~~~~~~~~~~i~~lLl~~gad~n~~d~~g~  240 (337)
T 4g8k_A          163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL--LSSDDSDVEAITHLLLDHGADVNVRGERGK  240 (337)
T ss_dssp             -CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH--HHSCTTTHHHHHHHHHHTTCCTTCCCGGGC
T ss_pred             cccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHH--HHcCcccHHHHHHHHHHCCCCCCCcCCCCC
Confidence            3455788999999999999999999975 8889999999999999998  776665555555555556999999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHc-CCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccc
Q 043188           99 TPLHVAAKFGHSDIVRVLVER-AKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYS  177 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  177 (197)
                      ||||+|+..++.+++++|+.. +.+++.                  .|..|+||||+|+..|+.+++++|+++|++++ .
T Consensus       241 t~L~~a~~~~~~~~v~~Ll~~~~~~vn~------------------~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n-~  301 (337)
T 4g8k_A          241 TPLILAVEKKHLGLVQRLLEQEHIEIND------------------TDSDGKTALLLAVELKLKKIAELLCKRGASTD-C  301 (337)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTSTTCCTTC------------------BCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST-T
T ss_pred             CHHHHHHHhhhhHHHHHHHHhcCCcccC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-C
Confidence            999999999999999999985 667665                  89999999999999999999999999999986 4


Q ss_pred             cccCCCcHHHHHHhcccCC
Q 043188          178 ANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       178 ~~~~g~tpl~~A~~~~~~~  196 (197)
                           .+||++|++.|+.+
T Consensus       302 -----~~~L~~A~~~~~~~  315 (337)
T 4g8k_A          302 -----GDLVMTARRNYDHS  315 (337)
T ss_dssp             -----CCHHHHHHHTTCHH
T ss_pred             -----CCHHHHHHHcCCHH
Confidence                 46999999998754

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1.8e-26  Score=157.78  Aligned_cols=128  Identities=23%  Similarity=0.213  Sum_probs=119.8

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..+.|+||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus        42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~----g~~~~~~~~~g~t  115 (169)
T 2y1l_E           42 AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA--LFGHLEIVEVLLKN----GADVNANDMEGHT  115 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCCCCCCCCC
Confidence            45668899999999999999999999999999889999999999999  99999999999986    8889999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcC
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKED  171 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  171 (197)
                      |||+|+..++.+++++|++.|+++..                  .+..|.||||+|+..++.+++++|++.|
T Consensus       116 ~L~~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          116 PLHLAAMFGHLEIVEVLLKNGADVNA------------------QDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999998776                  8999999999999999999999999875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=7.1e-27  Score=161.15  Aligned_cols=137  Identities=15%  Similarity=0.120  Sum_probs=127.5

Q ss_pred             ccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           19 EISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        19 ~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ...+..+.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~d~~g~  106 (179)
T 3f6q_A           33 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA--SHGHRDIVQKLLQY----KADINAVNEHGN  106 (179)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSC
T ss_pred             cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCccCCCCC
Confidence            356678899999999999999999999999999999999999999999  99999999999986    899999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccc
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSA  178 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  178 (197)
                      ||||+|+..++.+++++|++.|+++..                  .+..|.|||++|+..++.+++++|++.|++++ ..
T Consensus       107 t~L~~A~~~~~~~~v~~Ll~~ga~~~~------------------~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~-~~  167 (179)
T 3f6q_A          107 VPLHYACFWGQDQVAEDLVANGALVSI------------------CNKYGEMPVDKAKAPLRELLRERAEKMGQNLN-RI  167 (179)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSSB------------------CCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS-CB
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCcch------------------hccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc-cC
Confidence            999999999999999999999999876                  89999999999999999999999999999987 44


Q ss_pred             cc
Q 043188          179 NN  180 (197)
Q Consensus       179 ~~  180 (197)
                      +.
T Consensus       168 ~~  169 (179)
T 3f6q_A          168 PY  169 (179)
T ss_dssp             CC
T ss_pred             Cc
Confidence            33

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=2.9e-27  Score=173.83  Aligned_cols=146  Identities=20%  Similarity=0.251  Sum_probs=132.9

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHH--HhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCc-ccccCCCCCCcHHH
Q 043188           26 DPNLFKAAAAGNLEPFKDMAREVIE--RLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS-LLLQVNAKGDTPLH  102 (197)
Q Consensus        26 ~~~l~~a~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~t~l~  102 (197)
                      .++++.|+..|+++.++.+++.+.+  ++..|..|.||||+|+  ..|+.+++++|++.    +. +++.++..|.||||
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~--~~g~~~~v~~Ll~~----g~~~~~~~~~~g~tpL~  150 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSV--SHANFPVVQQLLDS----GVCKVDKQNRAGYSPIM  150 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----SCCCTTCCCTTSCCHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHH--HCCCHHHHHHHHHC----CCCcCCCCCCCCCCHHH
Confidence            4457889999999999999998777  6689999999999999  99999999999986    65 89999999999999


Q ss_pred             HHH-----HhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccc
Q 043188          103 VAA-----KFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYS  177 (197)
Q Consensus       103 ~a~-----~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  177 (197)
                      +|+     ..++.+++++|++.|.....                  .+..|.||||+|+..|+.+++++|++.|++++ .
T Consensus       151 ~a~~~~~~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-~  211 (276)
T 4hbd_A          151 LTALATLKTQDDIETVLQLFRLGNINAK------------------ASQAGQTALMLAVSHGRVDVVKALLACEADVN-V  211 (276)
T ss_dssp             HGGGCCCCSHHHHHHHHHHHHHSCTTCC------------------CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             HHHHHHhhhhhhHHHHHHHHHcCCCccc------------------cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-C
Confidence            999     66888999999999987665                  78899999999999999999999999999998 9


Q ss_pred             cccCCCcHHHHHHhcccCC
Q 043188          178 ANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       178 ~~~~g~tpl~~A~~~~~~~  196 (197)
                      +|..|.||||+|+..|+.+
T Consensus       212 ~d~~G~TpLh~A~~~g~~~  230 (276)
T 4hbd_A          212 QDDDGSTALMCACEHGHKE  230 (276)
T ss_dssp             CCTTSCCHHHHHHHHTCHH
T ss_pred             CCCCCCCHHHHHHHCCCHH
Confidence            9999999999999998754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=1.8e-27  Score=157.15  Aligned_cols=121  Identities=13%  Similarity=0.225  Sum_probs=112.3

Q ss_pred             HHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhh
Q 043188           50 ERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEE  129 (197)
Q Consensus        50 ~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  129 (197)
                      +++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.||||+|+. ++.+++++|++.++++..    
T Consensus         4 ~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~----   72 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAA--ARGQVETVRQLLEA----GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC----   72 (136)
T ss_dssp             CCSCCCCCCSCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC----
T ss_pred             CccCCCCCCccHHHHHH--HcCCHHHHHHHHHc----CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC----
Confidence            34567889999999999  99999999999986    88899999999999999999 999999999999999876    


Q ss_pred             HHhhHHHHHHHhhccCCC-CchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          130 LESRVGAARQMIRMTNNE-KNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                                    .+.. |.||||+|+..++.+++++|++.|++++ .++..|.|||++|+..++.+
T Consensus        73 --------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~  125 (136)
T 1d9s_A           73 --------------ADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRD  125 (136)
T ss_dssp             --------------CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHH
T ss_pred             --------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHH
Confidence                          8888 9999999999999999999999999998 99999999999999988754

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=9.8e-27  Score=158.34  Aligned_cols=128  Identities=18%  Similarity=0.163  Sum_probs=118.2

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..+.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus        37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t  110 (165)
T 3twr_A           37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC--SYGHYEVAELLVKH----GAVVNVADLWKFT  110 (165)
T ss_dssp             CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTCCC
T ss_pred             ccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH--HcCcHHHHHHHHhC----CCCCCCcCCCCCC
Confidence            45567789999999999999999999999999999999999999999  99999999999986    8899999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCC
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDP  172 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  172 (197)
                      |||+|+..++.+++++|++.|+++..                  .+..|.||+|+|+. ++.+++++|++.|+
T Consensus       111 ~L~~A~~~~~~~~v~~Ll~~ga~~~~------------------~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          111 PLHEAAAKGKYEICKLLLQHGADPTK------------------KNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcc------------------cCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            99999999999999999999998776                  89999999999876 89999999998875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=3.6e-27  Score=155.85  Aligned_cols=116  Identities=27%  Similarity=0.373  Sum_probs=66.4

Q ss_pred             cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHh
Q 043188           53 LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELES  132 (197)
Q Consensus        53 ~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  132 (197)
                      .++..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.++++..       
T Consensus         5 ~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------   71 (137)
T 3c5r_A            5 FTNHRGETLLHIAS--IKGDIPSVEYLLQN----GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT-------   71 (137)
T ss_dssp             CCCTTCCCHHHHHH--HHTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------
T ss_pred             CcCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC-------
Confidence            34555556666666  55555555555553    555555555556666666666666666666655555443       


Q ss_pred             hHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcc
Q 043188          133 RVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYR  193 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~  193 (197)
                                 .+..|.||||+|+..++.+++++|++.|++++ .+|..|.||+++|+..+
T Consensus        72 -----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~  120 (137)
T 3c5r_A           72 -----------TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDES  120 (137)
T ss_dssp             -----------CCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHH
T ss_pred             -----------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhcc
Confidence                       55555566666666666666666665565555 55555666665555443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=3.3e-26  Score=159.48  Aligned_cols=128  Identities=21%  Similarity=0.142  Sum_probs=120.1

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..+.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus        63 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t  136 (192)
T 2rfm_A           63 DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI--IFGYSEMSYFLLEH----GANVNDRNLEGET  136 (192)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCSSCCCTTCCC
T ss_pred             cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHHC----CCCCCCCCCCCCC
Confidence            45567899999999999999999999999999989999999999999  99999999999986    8899999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcC
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKED  171 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  171 (197)
                      |||+|+..++.+++++|++.|+++..                  .+..|.||||+|+..++.+++++|++.|
T Consensus       137 ~L~~A~~~~~~~~v~~Ll~~ga~~~~------------------~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          137 PLIVASKYGRSEIVKKLLELGADISA------------------RDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTC------------------BCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCC------------------cCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999999998776                  8999999999999999999999999754

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=2.3e-26  Score=156.82  Aligned_cols=131  Identities=17%  Similarity=0.150  Sum_probs=122.9

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..+.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t  104 (167)
T 3v31_A           31 HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC--SKGYTDIVKMLLDC----GVDVNEYDWNGGT  104 (167)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HHTCHHHHHHHHHH----TCCTTCCCTTSCC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH--HcCCHHHHHHHHHC----CCCCCcCCCCCCC
Confidence            45678899999999999999999999999999988999999999999  99999999999997    8889999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCc
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDY  174 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  174 (197)
                      |||+|+..++.+++++|++.|+++..                  .+..|.||||+|+..++.+++++|++++.+.
T Consensus       105 ~L~~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          105 PLLYAVHGNHVKCVKMLLESGADPTI------------------ETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            99999999999999999999998776                  8999999999999999999999999887654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=3.8e-26  Score=153.65  Aligned_cols=123  Identities=20%  Similarity=0.182  Sum_probs=116.2

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcH
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTP  100 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~  100 (197)
                      .+..+.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.||
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~  103 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA--SEGHANIVEVLLKH----GADVNAKDMLKMTA  103 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH--HHTCHHHHHHHHTT----TCCTTCCCTTSCCH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcChHHHHHHHHHc----CCCCCCCCCCCCCH
Confidence            4667899999999999999999999999999989999999999999  99999999999885    88899999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHH
Q 043188          101 LHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELL  167 (197)
Q Consensus       101 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  167 (197)
                      ||+|+..++.+++++|++.|+++..                  .+..|.||||+|+..|+.+++++|
T Consensus       104 L~~A~~~~~~~~v~~Ll~~ga~~~~------------------~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          104 LHWATEHNHQEVVELLIKYGADVHT------------------QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccc------------------cCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999998776                  899999999999999999999987

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=1.7e-27  Score=171.55  Aligned_cols=147  Identities=16%  Similarity=0.129  Sum_probs=130.4

Q ss_pred             ccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHH
Q 043188           23 SQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLH  102 (197)
Q Consensus        23 ~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~  102 (197)
                      +.+.|+||.|+..|+.++++.|++.|.+++.+|..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||
T Consensus        35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~----ga~~~~~d~~g~tpL~  108 (239)
T 1ycs_B           35 PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV--CAGHTEIVKFLVQF----GVNVNAADSDGWTPLH  108 (239)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH--HHTCHHHHHHHHHH----TCCTTCCCTTCCCHHH
T ss_pred             chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCccCCCCCCHHH
Confidence            56789999999999999999999999999999999999999999  99999999999997    8999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCc-hHHHHH--HhcCCHHHHHHHhhcCCCccccc-
Q 043188          103 VAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN-TALHEA--VCHQNVDVVELLTKEDPDYQYSA-  178 (197)
Q Consensus       103 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~-  178 (197)
                      +|+..++.+++++|+++|+++..                  .+..+. ||||+|  +..|+.+++++|++.|++++ .. 
T Consensus       109 ~A~~~~~~~~v~~Ll~~ga~~~~------------------~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~-~~~  169 (239)
T 1ycs_B          109 CAASCNNVQVCKFLVESGAAVFA------------------MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG-IMN  169 (239)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC------------------CCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT-TTG
T ss_pred             HHHHcCCHHHHHHHHHcCCCcce------------------ecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc-ccc
Confidence            99999999999999999999876                  666666 999999  78899999999999988876 43 


Q ss_pred             --------ccCCCcHHHHHHhccc
Q 043188          179 --------NNYGKTPLYMAADYRS  194 (197)
Q Consensus       179 --------~~~g~tpl~~A~~~~~  194 (197)
                              +..+.+|.+++...|.
T Consensus       170 ~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          170 KGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             GGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             cceEEEEeccCCCCCCcccccCCC
Confidence                    5567787777666553

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=7e-26  Score=149.46  Aligned_cols=118  Identities=19%  Similarity=0.254  Sum_probs=109.3

Q ss_pred             ccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhh
Q 043188           54 TAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESR  133 (197)
Q Consensus        54 ~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  133 (197)
                      ....+.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.+++++.        
T Consensus        10 ~~~~~~t~l~~A~--~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--------   75 (136)
T 2jab_A           10 HGSDLGKKLLEAA--RAGQDDEVRILMAN----GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA--------   75 (136)
T ss_dssp             --CHHHHHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--------
T ss_pred             ccccccHHHHHHH--HhCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--------
Confidence            4567899999999  99999999999986    888999999999999999999999999999999998776        


Q ss_pred             HHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          134 VGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       134 ~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                                .+..|.||||+|+..++.+++++|++.|++++ .+|..|.|||++|+..|+.+
T Consensus        76 ----------~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~  127 (136)
T 2jab_A           76 ----------VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNED  127 (136)
T ss_dssp             ----------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred             ----------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHH
Confidence                      88899999999999999999999999999988 89999999999999998754

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=1.1e-25  Score=151.67  Aligned_cols=128  Identities=15%  Similarity=0.130  Sum_probs=118.1

Q ss_pred             CcccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCC
Q 043188           17 NGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAK   96 (197)
Q Consensus        17 ~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   96 (197)
                      +....+..+.||||. +..|+.+++++|++.|.+++.++..|.||||+|+  ..|+.+++++|++.    +.+++.++..
T Consensus        28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~~~~  100 (156)
T 1bd8_A           28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAA--RTGFLDTLKVLVEH----GADVNVPDGT  100 (156)
T ss_dssp             CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCSCCCCTT
T ss_pred             CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH--HcCcHHHHHHHHHc----CCCCCCcCCC
Confidence            344567789999999 9999999999999999999999999999999999  99999999999986    8889999999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhc
Q 043188           97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE  170 (197)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  170 (197)
                      |.||||+|+..++.+++++|++. +++..                  .+..|.||||+|+..++.+++++|+++
T Consensus       101 g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~------------------~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          101 GALPIHLAVQEGHTAVVSFLAAE-SDLHR------------------RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHTT-SCTTC------------------CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCcHHHHHHHhChHHHHHHHHhc-cCCCC------------------cCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999999999999999998 77655                  899999999999999999999999864

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.93  E-value=1.3e-25  Score=165.76  Aligned_cols=149  Identities=15%  Similarity=0.070  Sum_probs=131.9

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCC-CcHHH
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKG-DTPLH  102 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~t~l~  102 (197)
                      .|.||||.|+..|+.+++++|++.|.+++.++..|.||||+|+  ..|+.+++++|++.    +.+++.++..| .||||
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~  134 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAV--DSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFY  134 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHH--HcCCHHHHHHHHhc----CCCCCccCCCCCCCHHH
Confidence            5899999999999999999999999999999999999999999  99999999999997    89999999999 79999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCccchhhHH---------------hhHHHHHHHhhccCCCCchH-HHHHHhcCCHHHHHH
Q 043188          103 VAAKFGHSDIVRVLVERAKLPQHENEELE---------------SRVGAARQMIRMTNNEKNTA-LHEAVCHQNVDVVEL  166 (197)
Q Consensus       103 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~  166 (197)
                      +|+..++.+++++|++.++...... .+.               ..+...+.+++..+..|.|| ||+|+..++.+++++
T Consensus       135 ~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~  213 (285)
T 3kea_A          135 HAVMLNDVSIVSYFLSEIPSTFDLA-ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQA  213 (285)
T ss_dssp             HHHHTTCHHHHHHHHTTSCTTCCCS-THHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCcccccc-CCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence            9999999999999999998774431 222               22223477789999999998 999999999999999


Q ss_pred             HhhcCCCccccccc
Q 043188          167 LTKEDPDYQYSANN  180 (197)
Q Consensus       167 Ll~~g~~~~~~~~~  180 (197)
                      |++.|++++ .++.
T Consensus       214 Ll~~gad~~-~~~~  226 (285)
T 3kea_A          214 LFKYDINIY-SANL  226 (285)
T ss_dssp             HTTSCBCST-TTTG
T ss_pred             HHHcCCCCC-CCCh
Confidence            999999988 6653

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=6e-25  Score=142.63  Aligned_cols=115  Identities=28%  Similarity=0.400  Sum_probs=108.0

Q ss_pred             cCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHH
Q 043188           57 TKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA  136 (197)
Q Consensus        57 ~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  136 (197)
                      +|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.+.++..           
T Consensus         1 ~g~t~L~~A~--~~~~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-----------   63 (126)
T 1n0r_A            1 NGRTPLHLAA--RNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-----------   63 (126)
T ss_dssp             CCCCHHHHHH--HHTCHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-----------
T ss_pred             CCccHHHHHH--HcCcHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc-----------
Confidence            4899999999  99999999999997    888899999999999999999999999999999998765           


Q ss_pred             HHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          137 ARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       137 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                             .+..|.||||+|+..++.+++++|++.|++++ .++..|.|||++|+..|+.+
T Consensus        64 -------~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~  115 (126)
T 1n0r_A           64 -------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLE  115 (126)
T ss_dssp             -------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred             -------cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHH
Confidence                   88899999999999999999999999999988 89999999999999988754

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=1.1e-26  Score=153.42  Aligned_cols=129  Identities=18%  Similarity=0.173  Sum_probs=115.6

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..|.|+||.|+..|+.+++++|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~----g~~~~~~~~~g~t   78 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC--NHGHLKVVELLLQH----KALVNTTGYQNDS   78 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCGGGCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCcccCcCCCCCC
Confidence            45678899999999999999999999999999889999999999999  99999999999986    8889999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCC
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDP  172 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  172 (197)
                      |||+|+..++.+++++|++.|+++..                  .+..|.||+|+|+..+..+++++|.+.+.
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~------------------~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASRNA------------------VNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC------------------CCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            99999999999999999999999776                  89999999999998888888877765543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=1.2e-25  Score=145.79  Aligned_cols=112  Identities=19%  Similarity=0.173  Sum_probs=80.7

Q ss_pred             ccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHH
Q 043188           56 KTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG  135 (197)
Q Consensus        56 ~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~  135 (197)
                      ..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.+++++.          
T Consensus         5 ~~~~~~l~~A~--~~~~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------   68 (123)
T 3aaa_C            5 SMCDKEFMWAL--KNGDLDEVKDYVAK----GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA----------   68 (123)
T ss_dssp             --CHHHHHHHH--HTTCHHHHHHHHHT----TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC----------
T ss_pred             cccchHHHHHH--HcCCHHHHHHHHHc----CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc----------
Confidence            35667777777  77777777777664    666777777777777777777777777777777776654          


Q ss_pred             HHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhc
Q 043188          136 AARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY  192 (197)
Q Consensus       136 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~  192 (197)
                              .|..|.||||+|+..++.+++++|++.|++++ .+|..|.||+++|...
T Consensus        69 --------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           69 --------PDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             --------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCCH
T ss_pred             --------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhCCH
Confidence                    67777777777777777777777777777766 7777777777777443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=9.7e-26  Score=161.40  Aligned_cols=130  Identities=15%  Similarity=0.032  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHh---cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHH
Q 043188           41 FKDMAREVIERL---LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLV  117 (197)
Q Consensus        41 v~~Ll~~g~~~~---~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll  117 (197)
                      ++.|+++|.+++   ..+..+.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+|+..++.+++++|+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~----g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll   74 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAA--LTGELEVVQQAVKE----MNDPSQPNEEGITALHNAICGANYSIVDFLI   74 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHH--HHTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHH--HcCCHHHHHHHHhc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            467888888776   34567788899999  99999999999987    8889999999999999999999999999999


Q ss_pred             HcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccc-ccCCCcHHHHH--Hhccc
Q 043188          118 ERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSA-NNYGKTPLYMA--ADYRS  194 (197)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~g~tpl~~A--~~~~~  194 (197)
                      +.|++++.                  .|..|.||||+|+..|+.+++++|++.|++++ .+ +..|.|||++|  +..|+
T Consensus        75 ~~ga~~n~------------------~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~g~tpL~~A~a~~~~~  135 (229)
T 2vge_A           75 TAGANVNS------------------PDSHGWTPLHCAASCNDTVICMALVQHGAAIF-ATTLSDGATAFEKCDPYREGY  135 (229)
T ss_dssp             HTTCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCSSTTCCTGGGCCTTSTTH
T ss_pred             HCCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCCHHHHHHHHhcCh
Confidence            99998776                  89999999999999999999999999999998 55 47999999999  77665


Q ss_pred             C
Q 043188          195 S  195 (197)
Q Consensus       195 ~  195 (197)
                      .
T Consensus       136 ~  136 (229)
T 2vge_A          136 A  136 (229)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=4.2e-26  Score=162.45  Aligned_cols=135  Identities=24%  Similarity=0.187  Sum_probs=110.3

Q ss_pred             cccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHH
Q 043188           22 QSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPL  101 (197)
Q Consensus        22 ~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l  101 (197)
                      +..+.|+||.|+..|+.++++.|++.|.+++..+..|.||||+|+  ..|+.+++++|++.   .+.+++.++..|.|||
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~---~g~~~~~~d~~g~tpL  144 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWAC--HGGHKDIVEMLFTQ---PNIELNQQNKLGDTAL  144 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHTTS---TTCCCCCCCTTSCCHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHH--HcCCHHHHHHHHcC---CCCCccccCCCCCCHH
Confidence            446688999999999999999999999988888899999999999  99999999988773   4788899999999999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccccc
Q 043188          102 HVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANN  180 (197)
Q Consensus       102 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (197)
                      |+|+..++.+++++|++.|+++..                  .+..|.||||+|+..++.++++.|++.|+... ..+.
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~~~~------------------~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~-~~~~  204 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGARTDL------------------RNIEKKLAFDMATNAACASLLKKKQGTDAVRT-LSNA  204 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSCC------------------CCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcc------------------ccCCCCCHHHHhcchhHHHHHHHHhccchhhh-ccch
Confidence            999999999999999999998776                  89999999999999999999999999988875 4444

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=1.1e-25  Score=146.06  Aligned_cols=111  Identities=19%  Similarity=0.123  Sum_probs=102.9

Q ss_pred             ccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHH
Q 043188           23 SQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLH  102 (197)
Q Consensus        23 ~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~  102 (197)
                      +.+.++|+.|+..|+.+.++.|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.||||
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~~~~d~~g~tpL~   78 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA--DCGQLEILEFLLLK----GADINAPDKHHITPLL   78 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHH--HTTCHHHHHHHHTT----TCCTTCCCTTSCCHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHH--HcCCHHHHHHHHHc----CCCCCcCCCCCCCHHH
Confidence            56789999999999999999999999999989999999999999  99999999999885    8889999999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHh
Q 043188          103 VAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVC  157 (197)
Q Consensus       103 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~  157 (197)
                      +|+..++.+++++|++.|+++..                  .+..|.||+|+|..
T Consensus        79 ~A~~~~~~~~v~~Ll~~ga~~~~------------------~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           79 SAVYEGHVSCVKLLLSKGADKTV------------------KGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHhCC
Confidence            99999999999999999998776                  89999999999954

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=8.1e-26  Score=156.45  Aligned_cols=131  Identities=18%  Similarity=0.128  Sum_probs=108.0

Q ss_pred             cccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCC-CCCCcH
Q 043188           22 QSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVN-AKGDTP  100 (197)
Q Consensus        22 ~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~t~  100 (197)
                      +..+.||||.|+..|+.+.++.|++ |.+++..+..|.||||+|+  ..|+.+++++|++.    +.+++.++ ..|.||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~--~~~~~~~v~~Ll~~----ga~~~~~~~~~g~tp  113 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA--GLGSDKCVRLLAEA----GADLDHRDMRGGLTA  113 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCSSSSCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCcCCCCCCCCH
Confidence            4577889999999999999999999 8888888889999999999  89999999988885    78888877 789999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccccc
Q 043188          101 LHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANN  180 (197)
Q Consensus       101 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (197)
                      ||+|+..++.+++++|+++|+++..                  .+..|.||||+|+..+                  ...
T Consensus       114 L~~A~~~~~~~~v~~Ll~~ga~~~~------------------~d~~g~tpl~~A~~~~------------------~~~  157 (183)
T 3deo_A          114 LHMAAGYVRPEVVEALVELGADIEV------------------EDERGLTALELAREIL------------------KTT  157 (183)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTC------------------CCTTSCCHHHHHHHHH------------------HTC
T ss_pred             HHHHHhcCcHHHHHHHHHcCCCCcC------------------CCCCCCCHHHHHHHhc------------------cCc
Confidence            9999999999999999999888776                  7888888888887532                  113


Q ss_pred             CCCcHHHHHHhcccC
Q 043188          181 YGKTPLYMAADYRSS  195 (197)
Q Consensus       181 ~g~tpl~~A~~~~~~  195 (197)
                      .+.+|+++|++.|..
T Consensus       158 ~~~~~l~~a~~~~~~  172 (183)
T 3deo_A          158 PKGNPMQFGRRIGLE  172 (183)
T ss_dssp             CCCSHHHHHHHHHHH
T ss_pred             ccccHHHHHHHcCHH
Confidence            456778877776653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=1.5e-25  Score=161.92  Aligned_cols=141  Identities=18%  Similarity=0.172  Sum_probs=105.9

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCC-CCCCc
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVN-AKGDT   99 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~t   99 (197)
                      .+..|.||||.|+..|+.++++.|++ |.+++.++..|.||||+|+  ..|+.+++++|++.    +.+++.++ ..|.|
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~----ga~~~~~~~~~g~t  113 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA--GLGSDKCVRLLAEA----GADLDHRDMRGGLT  113 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCSSSCCC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHH--HCCCHHHHHHHHHc----CCCCCcCCCCCCCC
Confidence            34578899999999999999999999 8888889999999999999  99999999999886    88888888 77999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhc
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE  170 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  170 (197)
                      |||+|+..++.+++++|+++|++++..+..+.+++..+....  ....+.||||+|+..|+.+++++|++.
T Consensus       114 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~--~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          114 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL--KTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH--TTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH--hccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            999999999999999999999998873333333333222211  122333344444444445555555443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=2.4e-25  Score=150.24  Aligned_cols=118  Identities=14%  Similarity=0.242  Sum_probs=107.7

Q ss_pred             cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHh
Q 043188           53 LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELES  132 (197)
Q Consensus        53 ~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  132 (197)
                      ..+..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+|+ .++.+++++|++.|++++.       
T Consensus         7 ~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~-------   72 (156)
T 1bi7_B            7 SSMEPSADWLATAA--ARGRVEEVRALLEA----GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-------   72 (156)
T ss_dssp             ---CCSTTHHHHHH--HHTCHHHHHHHHTT----TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-------
T ss_pred             CCCccchHHHHHHH--HcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC-------
Confidence            45678999999999  99999999999885    8889999999999999985 8999999999999998776       


Q ss_pred             hHHHHHHHhhccCCCCch-HHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          133 RVGAARQMIRMTNNEKNT-ALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~g~t-~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                                 .+..|.| |||+|+..++.+++++|++.|++++ .++..|.||||+|+..|+.+
T Consensus        73 -----------~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~  125 (156)
T 1bi7_B           73 -----------ADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRD  125 (156)
T ss_dssp             -----------CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHH
T ss_pred             -----------cCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHhCHHH
Confidence                       8999999 9999999999999999999999998 99999999999999988754

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=1.9e-24  Score=149.60  Aligned_cols=115  Identities=23%  Similarity=0.234  Sum_probs=106.6

Q ss_pred             cccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhH
Q 043188           55 AKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRV  134 (197)
Q Consensus        55 ~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  134 (197)
                      +..|.||||+|+  ..|+.++++.|++     +.+++.++..|.||||+|+..++.+++++|++.|++++.         
T Consensus        41 ~~~g~t~L~~A~--~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~---------  104 (183)
T 3deo_A           41 VSEYETPWWTAA--RKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH---------  104 (183)
T ss_dssp             HHHHHHHHHHHH--HTTCHHHHHHHTT-----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC---------
T ss_pred             CCCCCCHHHHHH--HcCCHHHHHHHHh-----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc---------
Confidence            457899999999  9999999999887     678899999999999999999999999999999999876         


Q ss_pred             HHHHHHhhccC-CCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccC
Q 043188          135 GAARQMIRMTN-NEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       135 ~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                               .+ ..|.||||+|+..++.+++++|++.|++++ .+|..|.||||+|++.++.
T Consensus       105 ---------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~  156 (183)
T 3deo_A          105 ---------RDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT  156 (183)
T ss_dssp             ---------CCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT
T ss_pred             ---------CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC
Confidence                     66 889999999999999999999999999998 9999999999999988764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=5.8e-26  Score=170.68  Aligned_cols=144  Identities=15%  Similarity=0.041  Sum_probs=121.7

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHhc-ccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHH
Q 043188           28 NLFKAAAAGNLEPFKDMAREVIERLL-TAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAK  106 (197)
Q Consensus        28 ~l~~a~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~  106 (197)
                      .++.|+..+..++++.|++.|.+++. ++..|.||||+|+  ..|+.+++++|++.    +++++.++..|.||||+|+.
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa--~~g~~~~v~~Ll~~----Gad~n~~d~~g~TpLh~A~~  173 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLT--SIANLELVKHLVKH----GSNRLYGDNMGESCLVKAVK  173 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHH--HTTCHHHHHHHHHT----TCCTTBCCTTCCCHHHHHHH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHH--HcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHH
Confidence            35777888888888999999999998 8999999999999  99999999999996    89999999999999999999


Q ss_pred             hCC---HHHHHHHHHcC-CCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHh----cCCHHHHHHHhhcCC------
Q 043188          107 FGH---SDIVRVLVERA-KLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVC----HQNVDVVELLTKEDP------  172 (197)
Q Consensus       107 ~~~---~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~----~~~~~~~~~Ll~~g~------  172 (197)
                      .++   .++++.|++.+ .++                  +..+..|+||||+|+.    .++.+++++|++.+.      
T Consensus       174 ~g~~~~~~~~~~ll~~~~~~~------------------~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~  235 (327)
T 1sw6_A          174 SVNNYDSGTFEALLDYLYPCL------------------ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK  235 (327)
T ss_dssp             SSHHHHTTCHHHHHHHHGGGG------------------GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHG
T ss_pred             hcccccHHHHHHHHHhhhccc------------------cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcc
Confidence            998   67777777765 333                  3489999999999998    899999999987742      


Q ss_pred             ---------------------------------------CcccccccCCCcHHHHHHhcccCC
Q 043188          173 ---------------------------------------DYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       173 ---------------------------------------~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                                                             +++ .+|..|.||||+|+..|+.+
T Consensus       236 ~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n-~~d~~G~TpLh~A~~~g~~~  297 (327)
T 1sw6_A          236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN-AQDSNGDTCLNIAARLGNIS  297 (327)
T ss_dssp             GGCCEEEC----------------CHHHHHCSHHHHHHHTTT-CCCTTSCCHHHHHHHHCCHH
T ss_pred             cchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCC-CCCCCCCCHHHHHHHcCCHH
Confidence                                                   344 78889999999999988754

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=3.8e-24  Score=162.58  Aligned_cols=145  Identities=19%  Similarity=0.221  Sum_probs=116.6

Q ss_pred             cCCHHHHHHHHc-CCcHHHHHHHHHHHHHhccc--ccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcH
Q 043188           24 QIDPNLFKAAAA-GNLEPFKDMAREVIERLLTA--KTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTP  100 (197)
Q Consensus        24 ~~~~~l~~a~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~  100 (197)
                      ...++||.|+.. |++++++.|++.|.+++..+  ..|.||||+|+  ..++.+++++|++.    +++++.++..|.||
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa--~~g~~~iv~~LL~~----Gadvn~~d~~G~Tp  271 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT--AANSLLACEFLLQN----GANVNQADSAGRGP  271 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSCCH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHH--HCCCHHHHHHHHHc----CCCCCCCCCCCCCH
Confidence            345799999999 99999999999999999776  89999999999  99999999999986    89999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCC---cccc
Q 043188          101 LHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPD---YQYS  177 (197)
Q Consensus       101 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~---~~~~  177 (197)
                      ||+|+..++.+++++|+++|++++.                  .|..|.||||+|+..++.+++++|++.+..   .. .
T Consensus       272 Lh~A~~~g~~~~v~~LL~~Gad~~~------------------~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~-~  332 (368)
T 3jue_A          272 LHHATILGHTGLACLFLKRGADLGA------------------RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAA-Q  332 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------
T ss_pred             HHHHHHcCcHHHHHHHHHCcCCCCC------------------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc-c
Confidence            9999999999999999999999876                  899999999999999999999999976533   23 5


Q ss_pred             cccCCCcHHHHHHhcc
Q 043188          178 ANNYGKTPLYMAADYR  193 (197)
Q Consensus       178 ~~~~g~tpl~~A~~~~  193 (197)
                      .+..+.|+++++....
T Consensus       333 ~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          333 GQAGDETYLDIFRDFS  348 (368)
T ss_dssp             ----------------
T ss_pred             cCCCCCCHHHHHHHHH
Confidence            5667888888876654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=1.6e-24  Score=154.29  Aligned_cols=118  Identities=23%  Similarity=0.191  Sum_probs=109.4

Q ss_pred             cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCccchhhHH
Q 043188           53 LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVER-AKLPQHENEELE  131 (197)
Q Consensus        53 ~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~  131 (197)
                      ..+..|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++. +++++.      
T Consensus        68 ~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~------  135 (222)
T 3ehr_A           68 EQAESIDNPLHEAA--KRGNLSWLRECLDN----RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ------  135 (222)
T ss_dssp             HHEEEESCHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC------
T ss_pred             cccccccccccccc--ccCcHHHHHHHHhC----CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc------
Confidence            35668999999999  99999999999885    888999999999999999999999999999998 888776      


Q ss_pred             hhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccC
Q 043188          132 SRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       132 ~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                                  .+..|.||||+|+..|+.+++++|++.|++++ .++..|.|||++|+..+..
T Consensus       136 ------------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~  186 (222)
T 3ehr_A          136 ------------QNKLGDTALHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACA  186 (222)
T ss_dssp             ------------CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCSHHHH
T ss_pred             ------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcchhHH
Confidence                        89999999999999999999999999999998 9999999999999887653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=2.5e-25  Score=154.29  Aligned_cols=126  Identities=10%  Similarity=-0.066  Sum_probs=111.0

Q ss_pred             ccCCHHHHHHHHcCCc----HHHHHHHHHHHHHhcccccCCcHHHHHHHhhhccc------ccHHHHHHHHHhCCccccc
Q 043188           23 SQIDPNLFKAAAAGNL----EPFKDMAREVIERLLTAKTKNTILHINIISQEREN------VSTKFVAEILEKCPSLLLQ   92 (197)
Q Consensus        23 ~~~~~~l~~a~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~------~~~~~l~~~l~~~~~~~~~   92 (197)
                      ..|.||||+|+..|+.    +++++|++.|.+++.++..|.||||+|+  ..++.      +++++|++.    +++++.
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~--~~~~~~~~~~~~iv~~Ll~~----Gadin~  109 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF--QGGGNDITGTTELCKIFLEK----GADITA  109 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH--HHCTTCHHHHHHHHHHHHHT----TCCSSS
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--HcCCcchhhHHHHHHHHHHC----CCCCCc
Confidence            6789999999999975    4899999999999999999999999999  87764      456666664    999999


Q ss_pred             CCCCCC-cHHHHHHHhCC-----HHHHHHHHH-cCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHH
Q 043188           93 VNAKGD-TPLHVAAKFGH-----SDIVRVLVE-RAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVE  165 (197)
Q Consensus        93 ~~~~~~-t~l~~a~~~~~-----~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  165 (197)
                      +|..|. ||||+|+..+.     .+++++|++ .|++++.                  .|..|.||||+|+..++.++++
T Consensus       110 ~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~------------------~d~~G~TpL~~A~~~~~~~~v~  171 (186)
T 3t8k_A          110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI------------------KDKWGLTALEFVKRCQKPIALK  171 (186)
T ss_dssp             CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC------------------CCTTSCCHHHHHHTTTCHHHHH
T ss_pred             cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc------------------cCCCCCCHHHHHHHcCCHHHHH
Confidence            999999 99999998543     468999999 9999876                  9999999999999999999999


Q ss_pred             HHhhcCC
Q 043188          166 LLTKEDP  172 (197)
Q Consensus       166 ~Ll~~g~  172 (197)
                      +|.+..-
T Consensus       172 ~L~~~~~  178 (186)
T 3t8k_A          172 MMEDYIK  178 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=1.5e-23  Score=154.07  Aligned_cols=127  Identities=17%  Similarity=0.152  Sum_probs=116.2

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHHHh------cccccCCcHHHHHHHhhh---cccccHHHHHHHHHhCCcccccCCC
Q 043188           25 IDPNLFKAAAAGNLEPFKDMAREVIERL------LTAKTKNTILHINIISQE---RENVSTKFVAEILEKCPSLLLQVNA   95 (197)
Q Consensus        25 ~~~~l~~a~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~lh~a~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~   95 (197)
                      ..++|+.|+..|+.+.++.+++.|.+++      ..+..|.||||+|+  ..   ++.+++++|++.    +++++.++.
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~--~~~~~~~~~~v~~Ll~~----ga~in~~d~  203 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV--RSVDRTSLHIVDFLVQN----SGNLDKQTG  203 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHH--HHCCTTTHHHHHHHHHH----CSCTTCCCT
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHH--HhcccchHHHHHHHHHC----CCCccccCC
Confidence            3467999999999999999999998854      34788999999999  88   888999999997    899999999


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcc
Q 043188           96 KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQ  175 (197)
Q Consensus        96 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  175 (197)
                      .|.||||+|+..++.+++++|+++|++++.                  .|..|.||||+|+..|+.+++++|++.|++..
T Consensus       204 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~------------------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          204 KGSTALHYCCLTDNAECLKLLLRGKASIEI------------------ANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------------------ccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999876                  89999999999999999999999999988643

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=1.6e-23  Score=151.23  Aligned_cols=141  Identities=20%  Similarity=0.167  Sum_probs=119.0

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHH
Q 043188           25 IDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVA  104 (197)
Q Consensus        25 ~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a  104 (197)
                      +.+++..++..|+.+.++.+...+.++   +..|.||||+|+  ..|+.++++.|++     +.+++.++..|.||||+|
T Consensus        15 ~~~~~l~~~~~g~~~~~~~~~~~~~~~---~~~g~t~L~~A~--~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A   84 (244)
T 3ui2_A           15 GAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAA--RKADEQALSQLLE-----DRDVDAVDENGRTALLFV   84 (244)
T ss_dssp             TEEEEEEEESSCCCCEEEEGGGSCHHH---HHHHHHHHHHHH--TTTCHHHHHHTTT-----TCCTTCBCTTSCBHHHHH
T ss_pred             CccHHHHHHHcCCCccccccccccccc---ccCCCCHHHHHH--HcCCHHHHHHHHc-----CCCCCCcCCCCCCHHHHH
Confidence            334455566666666655544444433   347899999999  9999999998877     678899999999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccC-CCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCC
Q 043188          105 AKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTN-NEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGK  183 (197)
Q Consensus       105 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  183 (197)
                      +..++.+++++|+++|++++.                  .+ ..|.||||+|+..|+.+++++|+++|++++ .+|..|.
T Consensus        85 ~~~g~~~~v~~Ll~~ga~~~~------------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~  145 (244)
T 3ui2_A           85 AGLGSDKCVRLLAEAGADLDH------------------RDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGL  145 (244)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC------------------CCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCC
T ss_pred             HHCCCHHHHHHHHHcCCCCCc------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCC
Confidence            999999999999999999876                  66 789999999999999999999999999998 9999999


Q ss_pred             cHHHHHHhccc
Q 043188          184 TPLYMAADYRS  194 (197)
Q Consensus       184 tpl~~A~~~~~  194 (197)
                      ||||+|+..+.
T Consensus       146 t~l~~A~~~~~  156 (244)
T 3ui2_A          146 TALELAREILK  156 (244)
T ss_dssp             CHHHHHHHHHT
T ss_pred             cHHHHHHHHHh
Confidence            99999986544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=9e-23  Score=125.79  Aligned_cols=93  Identities=27%  Similarity=0.372  Sum_probs=80.4

Q ss_pred             cCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHH
Q 043188           57 TKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA  136 (197)
Q Consensus        57 ~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  136 (197)
                      +|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.|++++.           
T Consensus         1 ~g~t~L~~A~--~~~~~~~v~~Ll~~----g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-----------   63 (93)
T 1n0q_A            1 NGRTPLHLAA--RNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-----------   63 (93)
T ss_dssp             --CCHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----------
T ss_pred             CCCcHHHHHH--HcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-----------
Confidence            4789999999  88999988888875    788888888899999999999999999999999888765           


Q ss_pred             HHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCC
Q 043188          137 ARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPD  173 (197)
Q Consensus       137 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  173 (197)
                             .|..|.||||+|+..++.+++++|++.|++
T Consensus        64 -------~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           64 -------KDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             -------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             -------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                   888899999999999999999999988874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=6.6e-23  Score=131.25  Aligned_cols=109  Identities=25%  Similarity=0.282  Sum_probs=98.4

Q ss_pred             cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHh
Q 043188           53 LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELES  132 (197)
Q Consensus        53 ~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  132 (197)
                      .+|..|.||||+|+  ..++.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.|+++..       
T Consensus         4 ~~d~~g~t~L~~A~--~~~~~~~~~~Ll~~----g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-------   70 (115)
T 2l6b_A            4 WGSKDGNTPLHNAA--KNGHAEEVKKLLSK----GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-------   70 (115)
T ss_dssp             CCSCSSCCHHHHHH--HHTCHHHHHHHTTT----TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC-------
T ss_pred             ccCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc-------
Confidence            57889999999999  99999999998885    888999999999999999999999999999999998765       


Q ss_pred             hHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHH
Q 043188          133 RVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPL  186 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl  186 (197)
                                 .+..|.||||+|+..++.+++++|++.|++++ .++..|.+|-
T Consensus        71 -----------~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n-~~~~~~~~~~  112 (115)
T 2l6b_A           71 -----------RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN-ARSWGSSHHH  112 (115)
T ss_dssp             -----------CCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHH-HHSCCCC---
T ss_pred             -----------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-cCCccccccc
Confidence                       88899999999999999999999999999998 8888888874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.87  E-value=1e-24  Score=166.30  Aligned_cols=142  Identities=13%  Similarity=0.104  Sum_probs=111.5

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHHHh---cccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcc---cccCCCCCC
Q 043188           25 IDPNLFKAAAAGNLEPFKDMAREVIERL---LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSL---LLQVNAKGD   98 (197)
Q Consensus        25 ~~~~l~~a~~~g~~~~v~~Ll~~g~~~~---~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~   98 (197)
                      +.||||.|+..|+.++|++|++.|....   ..+..|.||||+|+  ..|+.+++++|++.    +++   .+..+.. .
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa--~~G~~eiv~~Ll~~----gad~~~~~i~~~~-~  164 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA--ENGHLHVLNRLCEL----APTEIMAMIQAEN-Y  164 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH--HTTCHHHHHHHHHS----CTTTHHHHHSHHH-H
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH--HcCCHHHHHHHHhC----CCCccccccCCCC-C
Confidence            4599999999999999999999887221   23446788999999  99999999999885    532   1222222 8


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHH-hcCCHHHHHHHhhcCCCcccc
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV-CHQNVDVVELLTKEDPDYQYS  177 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~Ll~~g~~~~~~  177 (197)
                      ||||+|+..|+.+++++|++.|+++..                +..+..|.||||+|+ ..|+.+++++|++.|+     
T Consensus       165 TpLh~Aa~~G~~eiv~~Ll~~ga~~~~----------------~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-----  223 (376)
T 2aja_A          165 HAFRLAAENGHLHVLNRLCELAPTEAT----------------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-----  223 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHH----------------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-----
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCccch----------------hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-----
Confidence            999999999999999999999886431                014556899999999 9999999999998663     


Q ss_pred             cccCCCcHHHHHHhcccCCC
Q 043188          178 ANNYGKTPLYMAADYRSSNM  197 (197)
Q Consensus       178 ~~~~g~tpl~~A~~~~~~~i  197 (197)
                         .|.|||++|+..|+.++
T Consensus       224 ---~~~taL~~Aa~~g~~ev  240 (376)
T 2aja_A          224 ---MLAYAEIHEFEYGEKYV  240 (376)
T ss_dssp             ---HHHHHHHCTTTTTTTTH
T ss_pred             ---ccchHHHHHHHCCCHHH
Confidence               26799999999988763

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.9e-22  Score=124.31  Aligned_cols=93  Identities=27%  Similarity=0.315  Sum_probs=86.9

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHH
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHV  103 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~  103 (197)
                      .|.||||.|+..|+.+++++|++.|.+++.+|..|.||||+|+  ..++.+++++|++.    +.+++.++..|.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~--~~~~~~~v~~Ll~~----ga~~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA--RNGHLEVVKLLLEA----GADVNAKDKNGRTPLHL   74 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCCCccCCCCCCHHHH
Confidence            3678999999999999999999999999999999999999999  99999999999986    88999999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCC
Q 043188          104 AAKFGHSDIVRVLVERAKL  122 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~~~~  122 (197)
                      |+..++.+++++|++.|++
T Consensus        75 A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCC
Confidence            9999999999999998863

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=1e-21  Score=149.20  Aligned_cols=118  Identities=15%  Similarity=0.136  Sum_probs=107.5

Q ss_pred             ccccCCcHHHHHHHhhh-cccccHHHHHHHHHhCCcccccCC--CCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhH
Q 043188           54 TAKTKNTILHINIISQE-RENVSTKFVAEILEKCPSLLLQVN--AKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEEL  130 (197)
Q Consensus        54 ~~~~g~t~lh~a~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  130 (197)
                      ....+.|+||+|+  .. ++.++++.|++.    +.+++..+  ..|.||||+|+..++.+++++|+++|++++.     
T Consensus       195 ~~~~~~t~L~~Aa--~~~g~~~~v~~LL~~----Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~-----  263 (368)
T 3jue_A          195 GSLHPGALLFRAS--GHPPSLPTMADALAH----GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ-----  263 (368)
T ss_dssp             --CCHHHHHHHHT--SSSCCHHHHHHHHHT----TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----
T ss_pred             ccCCCCcHHHHHH--HccCCHHHHHHHHHc----CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-----
Confidence            3345668999999  99 999999999885    88899888  7899999999999999999999999999876     


Q ss_pred             HhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          131 ESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                                   .|..|.||||+|+..++.+++++|++.|++++ .+|..|.||||+|+..++.+
T Consensus       264 -------------~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~  315 (368)
T 3jue_A          264 -------------ADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANAD  315 (368)
T ss_dssp             -------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred             -------------CCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHH
Confidence                         89999999999999999999999999999998 99999999999999988754

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=5.7e-21  Score=140.33  Aligned_cols=113  Identities=22%  Similarity=0.240  Sum_probs=100.9

Q ss_pred             CcHHHHHHHhhhcccccHHHHHHHHHhCCcc------cccCCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCCccchhh
Q 043188           59 NTILHINIISQERENVSTKFVAEILEKCPSL------LLQVNAKGDTPLHVAAKF---GHSDIVRVLVERAKLPQHENEE  129 (197)
Q Consensus        59 ~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~  129 (197)
                      .++|+.|+  ..++.+.++.++..    +.+      ++..+..|.||||+|+..   ++.+++++|+++|++++.    
T Consensus       131 l~~l~~a~--~~~d~~~~~~ll~~----g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~----  200 (278)
T 1dcq_A          131 LHSLCEAV--KTRDIFGLLQAYAD----GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK----  200 (278)
T ss_dssp             HHHHHHHH--HTTCHHHHHHHHHT----TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC----
T ss_pred             hhhhhhHh--hhcccHHHHHHHHh----hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc----
Confidence            46899999  99998888877764    555      444578899999999999   899999999999999876    


Q ss_pred             HHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          130 LESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                                    .|..|.||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+..|+.+
T Consensus       201 --------------~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~  252 (278)
T 1dcq_A          201 --------------QTGKGSTALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEH  252 (278)
T ss_dssp             --------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred             --------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CccCCCCCHHHHHHHcCCHH
Confidence                          89999999999999999999999999999998 99999999999999988754

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=5e-21  Score=142.15  Aligned_cols=114  Identities=23%  Similarity=0.198  Sum_probs=103.3

Q ss_pred             CCcHHHHHHHhhhcccccHHHHHHHHHhCCccccc------CCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCCccchh
Q 043188           58 KNTILHINIISQERENVSTKFVAEILEKCPSLLLQ------VNAKGDTPLHVAAKF---GHSDIVRVLVERAKLPQHENE  128 (197)
Q Consensus        58 g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~~~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~  128 (197)
                      ..++|+.|+  ..++.+.++.+++.    +.+++.      .+..|.||||+|+..   ++.+++++|++.|++++.   
T Consensus       151 ~~~~L~~A~--~~g~~~~v~~ll~~----g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~---  221 (301)
T 2b0o_E          151 EPQRLWTAI--CNRDLLSVLEAFAN----GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA---  221 (301)
T ss_dssp             CHHHHHHHH--HTTCHHHHHHHHHT----TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTC---
T ss_pred             hHHHHhhhh--hccCHHHHHHHHhc----CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCC---
Confidence            346799999  99999999888764    777776      588899999999997   889999999999998776   


Q ss_pred             hHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          129 ELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                                     .|..|.||||+|+..|+.+++++|++.|++++ .+|..|.|||++|+..|+.+
T Consensus       222 ---------------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~  273 (301)
T 2b0o_E          222 ---------------KAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKE  273 (301)
T ss_dssp             ---------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHH
T ss_pred             ---------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHH
Confidence                           89999999999999999999999999999998 99999999999999988754

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.84  E-value=7e-21  Score=150.45  Aligned_cols=114  Identities=23%  Similarity=0.184  Sum_probs=104.8

Q ss_pred             CCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccC------CCCCCcHHHHHHH---hCCHHHHHHHHHcCCCCccchh
Q 043188           58 KNTILHINIISQERENVSTKFVAEILEKCPSLLLQV------NAKGDTPLHVAAK---FGHSDIVRVLVERAKLPQHENE  128 (197)
Q Consensus        58 g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~------~~~~~t~l~~a~~---~~~~~~~~~ll~~~~~~~~~~~  128 (197)
                      ..+.||.|+  ..|+.+.++.|++.    +.+++.+      +..|.||||+|+.   .++.+++++|+++|++++.   
T Consensus       132 ~~~~L~~A~--~~g~~~~v~~ll~~----g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~---  202 (497)
T 3lvq_E          132 EPQRLWTAI--CNRDLLSVLEAFAN----GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA---  202 (497)
T ss_dssp             CHHHHHHHH--HHTCHHHHHHHHHT----TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTC---
T ss_pred             cHHHHHHHH--hccCHHHHHHHHhh----cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCc---
Confidence            346799999  99999999999885    7888877      7889999999977   8999999999999999876   


Q ss_pred             hHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          129 ELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                                     .|..|+||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+..|+.+
T Consensus       203 ---------------~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~  254 (497)
T 3lvq_E          203 ---------------KAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKE  254 (497)
T ss_dssp             ---------------CCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCS-CCCTTCCCHHHHHHHTTCHH
T ss_pred             ---------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHH
Confidence                           89999999999999999999999999999998 99999999999999988754

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=5.4e-22  Score=126.94  Aligned_cols=100  Identities=23%  Similarity=0.262  Sum_probs=93.4

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..+.|+||.|+..|+.++++.|++.|.+++..+..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~--~~~~~~~~~~Ll~~----g~~~~~~d~~g~t   77 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA--KNGHAEIVKLLLAK----GADVNARSKDGNT   77 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHH--TTTCHHHHHHHTTT----TCCTTCCCTTCCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--HcCcHHHHHHHHHc----CCCCcccCCCCCC
Confidence            45678899999999999999999999999998889999999999999  99999999999885    8889999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCcc
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQH  125 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~  125 (197)
                      |||+|+..++.+++++|+++|++++.
T Consensus        78 pl~~A~~~~~~~~~~~Ll~~ga~~n~  103 (115)
T 2l6b_A           78 PEHLAKKNGHHEIVKLLDAKGADVNA  103 (115)
T ss_dssp             TTHHHHTTTCHHHHHHHHTTSSSHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCCc
Confidence            99999999999999999999998765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.83  E-value=5.2e-22  Score=151.34  Aligned_cols=141  Identities=15%  Similarity=0.110  Sum_probs=110.8

Q ss_pred             CHHHHHHHH-cCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcc---cccCCCCCCcHH
Q 043188           26 DPNLFKAAA-AGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSL---LLQVNAKGDTPL  101 (197)
Q Consensus        26 ~~~l~~a~~-~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~t~l  101 (197)
                      -++++.|.. .++.+.++++++.|.       .+.||||+|+  +.|+.+++++|++.    +..   ....+..+.|||
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~g~-------~~~T~Lh~Aa--~~G~~e~v~~Ll~~----ga~~~~~~~~~~~~~tpL  132 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKKGI-------KSEVICFVAA--ITGCSSALDTLCLL----LTSDEIVKVIQAENYQAF  132 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHHTC-------CHHHHHHHHH--HHCCHHHHHHHTTC------CCSSCC--CHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCC-------CcCCHHHHHH--HcCCHHHHHHHHHc----CCcHHHHHHhccCCCCHH
Confidence            345666666 577888888888765       3459999999  99999999999885    431   123344678999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccc--cc
Q 043188          102 HVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYS--AN  179 (197)
Q Consensus       102 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~--~~  179 (197)
                      |+|+.+|+.+++++|++.|+++..               .+..+.. .||||+|+..|+.+++++|++.|+++. .  .+
T Consensus       133 ~~Aa~~G~~eiv~~Ll~~gad~~~---------------~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~-~~~~d  195 (376)
T 2aja_A          133 RLAAENGHLHVLNRLCELAPTEIM---------------AMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEA-TAMIQ  195 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCTTTHH---------------HHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH-HHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCccc---------------cccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc-hhccC
Confidence            999999999999999999975321               1112223 899999999999999999999999987 5  78


Q ss_pred             cCCCcHHHHHH-hcccCC
Q 043188          180 NYGKTPLYMAA-DYRSSN  196 (197)
Q Consensus       180 ~~g~tpl~~A~-~~~~~~  196 (197)
                      ..|.||||+|+ ..|+.+
T Consensus       196 ~~g~TpL~~Aa~~~G~~e  213 (376)
T 2aja_A          196 AENYYAFRWAAVGRGHHN  213 (376)
T ss_dssp             HHHHHHHHHHHSTTCCHH
T ss_pred             CCCCCHHHHHHHHCCCHH
Confidence            88999999999 998754

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=2.9e-19  Score=113.35  Aligned_cols=89  Identities=21%  Similarity=0.298  Sum_probs=47.5

Q ss_pred             cccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhH
Q 043188           55 AKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRV  134 (197)
Q Consensus        55 ~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  134 (197)
                      +.+|.||||+|+  ..|+.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.|+++..         
T Consensus        21 ~~~g~t~L~~A~--~~g~~~~v~~Ll~~----g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~---------   85 (110)
T 2zgd_A           21 GSDLGKKLLEAA--RAGQDDEVRILMAN----GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA---------   85 (110)
T ss_dssp             -CCHHHHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---------
T ss_pred             CCccchHHHHHH--HcCCHHHHHHHHHc----CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc---------
Confidence            445555555555  55555555555543    445555555555555555555555555555555555443         


Q ss_pred             HHHHHHhhccCCCCchHHHHHHhcCCHHHHHHH
Q 043188          135 GAARQMIRMTNNEKNTALHEAVCHQNVDVVELL  167 (197)
Q Consensus       135 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  167 (197)
                               .+..|.||||+|+..++.+++++|
T Consensus        86 ---------~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           86 ---------QDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             ---------CCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ---------cccCCCcHHHHHHHcCCHHHHHHh
Confidence                     455555555555555555555544

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=7e-19  Score=111.59  Aligned_cols=91  Identities=19%  Similarity=0.243  Sum_probs=83.9

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..+.++||.|+..|+.+++++|++.|.+++.+|..|.||||+|+  ..++.+++++|++.    +.+++.++..|.|
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~--~~~~~~~v~~Ll~~----ga~~~~~d~~g~t   92 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA--RNGHLEVVKLLLEA----GADVXAQDKFGKT   92 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH--HcCCHHHHHHHHHc----CCCccccccCCCc
Confidence            45678899999999999999999999999999999999999999999  99999999999986    8889999999999


Q ss_pred             HHHHHHHhCCHHHHHHH
Q 043188          100 PLHVAAKFGHSDIVRVL  116 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~l  116 (197)
                      |||+|+..++.+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999886

>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A

Probab=81.50  E-value=0.96  Score=21.69  Aligned_cols=19  Identities=21%  Similarity=0.501  Sum_probs=15.8

Q ss_pred             HHHHHHHcCCcHHHHHHHH
Q 043188           28 NLFKAAAAGNLEPFKDMAR   46 (197)
Q Consensus        28 ~l~~a~~~g~~~~v~~Ll~   46 (197)
                      -+..||..|++++++.|-.
T Consensus        16 qiyvA~seGd~etv~~Le~   34 (40)
T 1gp8_A           16 QMDAAASKGDVETYRKLKA   34 (40)
T ss_dssp             HHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHH
Confidence            3788999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	6e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.003
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 2e-12
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 19/99 (19%)

Query: 99  TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCH 158
           TPLHVA+  GH  IV+ L++R               GA+     ++N +  T LH A   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR---------------GAS---PNVSNVKVETPLHMAARA 43

Query: 159 QNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
            + +V + L +       +     +TPL+ AA    +NM
Sbjct: 44  GHTEVAKYLLQNKAKVN-AKAKDDQTPLHCAARIGHTNM 81

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 5e-10
 Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 22/184 (11%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS 88
           L  A+  G+L   K++ +      ++     T LH+   +   E      VA+ L +  +
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE------VAKYLLQNKA 57

Query: 89  LLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQ--------- 139
            +        TPLH AA+ GH+++V++L+E    P        + +  A +         
Sbjct: 58  KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 117

Query: 140 ------MIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYR 193
                        +  T LH A  +  V V ELL + D     +A   G TPL++A  + 
Sbjct: 118 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHN 176

Query: 194 SSNM 197
           + ++
Sbjct: 177 NLDI 180

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 33/184 (17%), Positives = 61/184 (33%), Gaps = 22/184 (11%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS 88
           L  AA    +E  + + +        +    T LH+       E      +  +L    +
Sbjct: 202 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE------MVALLLSKQA 255

Query: 89  LLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELES---------------R 133
                N  G TPLH+ A+ GH  +  VL++   +         +                
Sbjct: 256 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 315

Query: 134 VGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYR 193
           +   +  +        + LH+A    + D+V LL K         ++ G TPL +A    
Sbjct: 316 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSSDGTTPLAIAKRLG 374

Query: 194 SSNM 197
             ++
Sbjct: 375 YISV 378

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 1e-08
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 24/139 (17%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS 88
           L   A  G++     + +  +    T +   T LH+       + V      + L +  +
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV------KFLLQHQA 321

Query: 89  LLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
            +      G +PLH AA+ GH+DIV +L++                GA+       +++ 
Sbjct: 322 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN---------------GAS---PNEVSSDG 363

Query: 149 NTALHEAVCHQNVDVVELL 167
            T L  A     + V ++L
Sbjct: 364 TTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 27/178 (15%)

Query: 13  LLDNNGEISQSQIDPN--LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQE 70
           LL+ +   + +  +    L  A    NL+  K +          A    T LHI     +
Sbjct: 151 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 210

Query: 71  RENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEEL 130
            E          L +        + +G TPLH+AA+ GH+++V +L+ +           
Sbjct: 211 VEVA------RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK----------- 253

Query: 131 ESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYM 188
                  +    + N    T LH      +V V ++L K       +      TPL++
Sbjct: 254 -------QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG-YTPLHV 303

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 79  VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENE---------- 128
           VAE+L +  +        G TPLHVA    + DIV++L+ R   P               
Sbjct: 147 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA 206

Query: 129 -----ELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGK 183
                E+   +          + +  T LH A    + ++V  L           N  G 
Sbjct: 207 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA-LLLSKQANGNLGNKSGL 265

Query: 184 TPLYMAADYRSSNM 197
           TPL++ A      +
Sbjct: 266 TPLHLVAQEGHVPV 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 7e-11
 Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 20/124 (16%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVERA--------------------KLPQHENEELESR 133
              G T L  AA+ GH +++++L++                           + E +   
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 134 VGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYR 193
           +      + +      T L  AV  +++ +V+ L +++       ++ GKT L +A + +
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264

Query: 194 SSNM 197
              +
Sbjct: 265 LKKI 268

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 8e-09
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 32/146 (21%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLT-------AKTKNTILHINIISQERENVSTKFVAE 81
           L  AA  G++E        V++ LL        A        +       ++   + +  
Sbjct: 152 LMDAAEKGHVE--------VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203

Query: 82  ILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMI 141
           +L    + +     +G TPL +A +  H  +V+ L+E+  +                  I
Sbjct: 204 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-----------------I 246

Query: 142 RMTNNEKNTALHEAVCHQNVDVVELL 167
             T+++  TAL  AV  +   + ELL
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 9e-07
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 147 EKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
           E N  L +AV +++VD+V+ L +   +  +     G TPL+ A      ++
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI 54

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 9e-06
 Identities = 31/158 (19%), Positives = 50/158 (31%), Gaps = 29/158 (18%)

Query: 59  NTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVE 118
           N +L   +     +N     V ++LE   ++  Q    G TPLH A +    DIV +L+ 
Sbjct: 6   NHLLIKAV-----QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 119 RAKLPQHENEELESRVGAA---------------RQMIRMTNNEKNTALHEAVCHQNVDV 163
               P    +   +    A                  +   +    TA  EA  +  V  
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 164 VELLTKEDPDYQY---------SANNYGKTPLYMAADY 192
           ++ L K   +                 G T L  AA+ 
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 56  KTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRV 115
           +   T L +       E      V  +LE+    +   ++ G T L +A +     I  +
Sbjct: 217 ERGKTPLILA-----VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 116 LVER 119
           L +R
Sbjct: 272 LCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 17/94 (18%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEA 155
           + +  L  A +    D+V+ L+E       +                       T LH A
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----------------EEGGWTPLHNA 46

Query: 156 VCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA 189
           V     D+VELL +   D      N     L  A
Sbjct: 47  VQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 55.3 bits (132), Expect = 6e-10
 Identities = 28/181 (15%), Positives = 51/181 (28%), Gaps = 22/181 (12%)

Query: 24  QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVST---KFVA 80
           + DP L           F+         L+T   K  I      ++  E V      + A
Sbjct: 11  ENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYA 70

Query: 81  EILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA 137
                   L    + K    +    VAA  G S  +  L             L +     
Sbjct: 71  HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTL-----------CLLLTS-DEI 118

Query: 138 RQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYS-ANNYGKTPLYMAADYRSSN 196
              +++   E   A   A  + ++ V+  L +  P    +           +AA+    +
Sbjct: 119 ---VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH 175

Query: 197 M 197
           +
Sbjct: 176 V 176

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 16/95 (16%)

Query: 79  VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
              +L     ++  + A+      +AA+ GH  ++  L E                 A  
Sbjct: 108 TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL----------------APT 151

Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPD 173
           +++ M   E   A   A  + ++ V+  L +  P 
Sbjct: 152 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 186

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 10/76 (13%), Positives = 15/76 (19%), Gaps = 13/76 (17%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTA 151
                    L         D +R L+    +                        + N  
Sbjct: 274 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP-------------TATIPGDANEL 320

Query: 152 LHEAVCHQNVDVVELL 167
           L  A+   N     LL
Sbjct: 321 LRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 8/111 (7%), Positives = 23/111 (20%), Gaps = 9/111 (8%)

Query: 89  LLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEEL-----ESRVGAARQMIRM 143
            LL              ++G   +   +       +  ++       +       +   +
Sbjct: 215 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 274

Query: 144 TNNEKNTALHEAVCHQNVDVVELLTK----EDPDYQYSANNYGKTPLYMAA 190
                   L        +D +  L      +      +        L +A 
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 325

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.4 bits (129), Expect = 1e-09
 Identities = 16/97 (16%), Positives = 41/97 (42%), Gaps = 18/97 (18%)

Query: 73  NVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELES 132
             +   V  ++ +  S   + +  G TP+ +AA+ G  ++V  L+++             
Sbjct: 197 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ------------- 243

Query: 133 RVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK 169
             GA+   +   +   +TA   A  + + ++V++  +
Sbjct: 244 --GAS---VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.0 bits (102), Expect = 3e-06
 Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 140 MIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
                + +  T +  A     ++VV  L ++    + + +    T   +A      N+
Sbjct: 213 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE-AVDATDHTARQLAQANNHHNI 269

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.9 bits (94), Expect = 4e-05
 Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 25/107 (23%)

Query: 98  DTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVC 157
           ++P+ +  +   S  +   + R  +                    +      T LH    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNI------------------IDPRHNRTVLHWIAS 42

Query: 158 HQNVDVVELLTKEDPDYQYSA-------NNYGKTPLYMAADYRSSNM 197
           + + +  E L   +     +A       +    TPL +A   R   +
Sbjct: 43  NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 89

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.7 bits (91), Expect = 9e-05
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
             T LH  A    ++    L+       HE +E  +  GA    +   + ++NT L  AV
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIV------HEAKECIAA-GA---DVNAMDCDENTPLMLAV 82

Query: 157 CHQNVD 162
             +   
Sbjct: 83  LARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 56  KTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRV 115
           +   T + +       E      V   L +  + +  V+A   T   +A    H +IV +
Sbjct: 219 EDGKTPIMLAAQEGRIE------VVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 272

Query: 116 LVERAK 121
             +R +
Sbjct: 273 F-DRCR 277

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 16/128 (12%)

Query: 78  FVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELES----- 132
            + + L    + +  VN  G TPLH AA     +I  +L+E    P  ++    +     
Sbjct: 84  EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 143

Query: 133 ----------RVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYG 182
                      +   +    + + E NT LH A   + V+  +LL  +     Y  N   
Sbjct: 144 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEE 202

Query: 183 KTPLYMAA 190
           KTPL +A 
Sbjct: 203 KTPLQVAK 210

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 9e-07
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 16/125 (12%)

Query: 79  VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
           + E +    SL  + +    T LH A   GH++IV  L++       +++   S +  A 
Sbjct: 19  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 78

Query: 139 Q---------------MIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGK 183
                            +   N    T LH A      ++  +L +   +   + ++Y  
Sbjct: 79  SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYEA 137

Query: 184 TPLYM 188
           T ++ 
Sbjct: 138 TAMHR 142

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 79  VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVE 118
            A++L    + +   N +  TPL VA   G   I++ +VE
Sbjct: 184 EAKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 2e-08
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 15/69 (21%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTAL 152
           V   GDT LH+A    H   +  L+                  A  + + + N+   TAL
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGF---------------SAGHEYLDLQNDLGQTAL 49

Query: 153 HEAVCHQNV 161
           H A      
Sbjct: 50  HLAAILGEA 58

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 145 NNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMAADY 192
             + +TALH AV HQ+   ++ L       +Y    N+ G+T L++AA  
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL 55

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 5e-05
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 79  VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVER-AKLPQ 124
           V E+L K  +        G TPL  A    +  + R+L    A  P+
Sbjct: 207 VLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (84), Expect = 7e-04
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 18/69 (26%)

Query: 99  TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCH 158
           TPLH+A +   + ++ +L++                GA             T L  A+  
Sbjct: 194 TPLHLAVEAQAASVLELLLKA---------------GAD---PTARMYGGRTPLGSALLR 235

Query: 159 QNVDVVELL 167
            N  +  LL
Sbjct: 236 PNPILARLL 244

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 31/228 (13%), Positives = 71/228 (31%), Gaps = 40/228 (17%)

Query: 10  EASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMA-----REVIERLLTAKTKNTILHI 64
            +  L +  +I ++   P +        LE F         +E+   L    +       
Sbjct: 11  TSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGG 70

Query: 65  NIISQERENVSTKFVAEILEKCPSLLLQVNAK----GDTPLHVAAKFGHSDIVRVLVERA 120
           +   Q++       + E+ +  P+  L +N      G+TPLH      + ++V+ LV+  
Sbjct: 71  SSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG 130

Query: 121 KLPQHENEELESRVGAA-------------------RQMIRMTNNEKNTALHEAVCHQNV 161
               + +   ES +  A                      + + ++   T LH  +    +
Sbjct: 131 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM 190

Query: 162 D------------VVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
                        ++  + K+      S  N  ++        R  ++
Sbjct: 191 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 238

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 7e-07
 Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 23/142 (16%)

Query: 56  KTKNTILHINIISQERENVS-------TKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFG 108
               TILH  II+      S          +  I++K    +     + ++  +      
Sbjct: 175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 234

Query: 109 HSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLT 168
              I+  L  +  +                 M+   ++  +T L+ A    N+ +V+ L 
Sbjct: 235 KDSILENLDLKWII---------------ANMLNAQDSNGDTCLNIAARLGNISIVDALL 279

Query: 169 KEDPDYQYSANNYGKTPLYMAA 190
               D    AN  G  P+   A
Sbjct: 280 DYGADPF-IANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 26/158 (16%), Positives = 46/158 (29%), Gaps = 28/158 (17%)

Query: 9   EEASLLDNNGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIIS 68
                L     +  S     L        +      A+  ++ L+    K     I   +
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 220

Query: 69  QERENVSTKFVAEILEKCPSLLLQ-------VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
            E+E+       E  +     L         +NA+   GDT L++AA+ G+  IV  L++
Sbjct: 221 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 280

Query: 119 RAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
                           GA      + N      +    
Sbjct: 281 Y---------------GAD---PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 9/171 (5%)

Query: 29  LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS 88
           L    +  NLE  K + +    RL       + L   + S    +  T     +L+    
Sbjct: 111 LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGT--FEALLDYLYP 168

Query: 89  LLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
            L+  ++   T LH                 AK           +       I+   NEK
Sbjct: 169 CLILEDSMNRTILHHIIITSGMTGCSAA---AKYYLDILMGWIVKKQNRP--IQSGTNEK 223

Query: 149 NTALHEAVCHQNVDVVELLTKEDPDYQY--SANNYGKTPLYMAADYRSSNM 197
            +  ++    +   ++E L  +        + ++ G T L +AA   + ++
Sbjct: 224 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 274

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (110), Expect = 3e-07
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 149 NTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
           N  LH+A        V+ L    P      +  G+ PL+ +  +++  +
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEI 49

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 6e-05
 Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 17/64 (26%)

Query: 98  DTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVC 157
           + PLH A        V+ L+                      ++   + +    LH +V 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKP-----------------SLLLQKDQDGRIPLHWSVS 43

Query: 158 HQNV 161
            Q  
Sbjct: 44  FQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 59  NTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGH 109
           N  LH               V E+L   PSLLLQ +  G  PLH +  F  
Sbjct: 1   NYPLHQAC-----MENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 5e-04
 Identities = 9/53 (16%), Positives = 19/53 (35%)

Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
             +   + +  T L  A+   + D   LL ++        +N G     +A +
Sbjct: 163 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 215

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 20/76 (26%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTA 151
             + +G TPL  A   GH D   +LVE+               GA      + +N+   A
Sbjct: 167 WQDKQGWTPLFHALAEGHGDAAVLLVEKY--------------GAE---YDLVDNKGAKA 209

Query: 152 LHEAVCHQNVDVVELL 167
              A+   N  V +  
Sbjct: 210 EDVAL---NEQVKKFF 222

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.3 bits (108), Expect = 6e-07
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 19/130 (14%)

Query: 62  LHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAK 121
           + I    +E E +  +   + L       ++    G T LHVAA  G+++++++L++   
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-- 221

Query: 122 LPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNY 181
                           R  + + + +  T LH A      +   +L +   D + + N  
Sbjct: 222 ----------------RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME-AVNKV 264

Query: 182 GKTPLYMAAD 191
           G+T   +A +
Sbjct: 265 GQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.7 bits (91), Expect = 9e-05
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 24/118 (20%)

Query: 54  TAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIV 113
            AK+  T LH+       E      V ++L +    +   +  G TPLH AA +G  +  
Sbjct: 195 HAKSGGTALHVAAAKGYTE------VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 114 RVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKED 171
           R+LVE                      +   N    TA   A       + EL  K++
Sbjct: 249 RILVEN---------------LCD---MEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.0 bits (84), Expect = 9e-04
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 118 ERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYS 177
              +L +    E +      ++       +       A    + + V  L +   D  Y 
Sbjct: 10  RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINY- 68

Query: 178 ANNYGKTPLYMAADYRSSNM 197
           AN  G T L+ A    + +M
Sbjct: 69  ANVDGLTALHQACIDDNVDM 88

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-06
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 14/64 (21%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           GDTPLH+A   G+   V  LV            L  + G     + + NN + T LH AV
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLV-----------NLFQQGGRE---LDIYNNLRQTPLHLAV 48

Query: 157 CHQN 160
               
Sbjct: 49  ITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-05
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 18/87 (20%)

Query: 78  FVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA 137
            + ++L +  + +      G + LH A+  G   +VR LV                 GA 
Sbjct: 158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS---------------GA- 201

Query: 138 RQMIRMTNNEKNTALHEAVCHQNVDVV 164
                + N   +T L  A   + +D++
Sbjct: 202 --DSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 149 NTALHEAVCHQNVDVVELLTKEDPDYQYSAN---NYGKTPLYMAADYRSSNM 197
           +T LH AV   N+  V  L           +   N  +TPL++A      ++
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 55

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 5e-04
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVR 114
             N   DTPL VA      DI+R
Sbjct: 205 LKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYR 193
             +       ++ALH A     + +V  L +   D     N +  TPL +A   R
Sbjct: 168 ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS-LKNCHNDTPLMVARSRR 221

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.8 bits (96), Expect = 6e-06
 Identities = 14/109 (12%), Positives = 24/109 (22%), Gaps = 14/109 (12%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
            D     A K G  D V+  V + +      E     +  A    ++   E        +
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 157 CH--------------QNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
                           +       L       +      G T L    +
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN 110

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-05
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLVER 119
             N KGDT   +A  +G +++V ++   
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELL 167
             +   N++ +TA   A  +   +VV L+
Sbjct: 124 SNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-05
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 14/64 (21%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
           GD+ LH+A       +   ++ + K                   +   NN + T LH AV
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVK--------------GDLAFLNFQNNLQQTPLHLAV 47

Query: 157 CHQN 160
               
Sbjct: 48  ITNQ 51

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 7e-05
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 11/76 (14%)

Query: 59  NTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVE 118
            T LH+ +  Q  + VS                 V  +G +P  +      + I + L +
Sbjct: 146 RTALHLAVDLQNPDLVSLLLKCGADVNR------VTYQGYSPYQLTWGRPSTRIQQQLGQ 199

Query: 119 R-----AKLPQHENEE 129
                   LP+ E+EE
Sbjct: 200 LTLENLQMLPESEDEE 215

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 149 NTALHEAVCHQNVDVVELLTK---EDPDYQYSANNYGKTPLYMA 189
           ++ LH A+ H+   +   + +    D  +    NN  +TPL++A
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 0.004
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
            +         TALH AV  QN D+V LL K   D        G +P  +     S+ +
Sbjct: 136 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRI 193

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.5 bits (93), Expect = 4e-05
 Identities = 11/42 (26%), Positives = 25/42 (59%)

Query: 75  STKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVL 116
           + + ++++L +   L   ++  G+T LH+AA+F  +D  + L
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVL 116
            +     P  VA++  H DIVR+L
Sbjct: 185 TDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 15/106 (14%)

Query: 77  KFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA 136
           + + E L    + +   +  G T LH AA   +++ V +L+        ++++ E+ +  
Sbjct: 103 EGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFL 162

Query: 137 ARQM---------------IRMTNNEKNTALHEAVCHQNVDVVELL 167
           A +                  +T++        A    + D+V LL
Sbjct: 163 AAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 5e-05
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 77  KFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVL 116
           + V E+L K  + +   +    T   ++   G+ D+  +L
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 99  TPLHVAAKFGHSDIVRVLVER 119
             L  AA+ G  D VR+L+  
Sbjct: 4   KKLLEAARAGQDDEVRILMAN 24

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 141 IRMTNNEKNTALHEAVCHQNVDVVELL 167
           +   +    TA   ++ + N D+ E+L
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 7e-05
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVE 118
           +A+G TPL +A + G  D+V +L  
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQG 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 18/132 (13%)

Query: 56  KTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKF---GHSDI 112
             K   L   + +++   +   +   +       L   +   +T LH+A +        I
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63

Query: 113 VRVLVE---------------RAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVC 157
           V  LV+                      +N E    +   +  I + N    T L  A  
Sbjct: 64  VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 123

Query: 158 HQNVDVVELLTK 169
            ++    ELLT+
Sbjct: 124 LKHEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLVE--RAKLPQHENEELE 131
           N  G+TPL +A +  H     +L +    +   H + E E
Sbjct: 111 NESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYE 150

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 5e-04
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVERA 120
           G  P+ +A + GH D+ R L   A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 12/110 (10%), Positives = 29/110 (26%), Gaps = 14/110 (12%)

Query: 97  GDTPLHVAAKFGHSDIVRVLVE--------------RAKLPQHENEELESRVGAARQMIR 142
               L  AA  G  + VR L+E                ++    +  +   +        
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 143 MTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
             +    T        +      ++           + +G+ P+ +A + 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.89
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.88
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.86
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.86
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.85
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.85
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.84
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.83
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.7

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.1e-31  Score=189.59  Aligned_cols=168  Identities=22%  Similarity=0.133  Sum_probs=128.1

Q ss_pred             cccCCHHHHHHHHcCCcHHHHHHHHHHHH---HhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           22 QSQIDPNLFKAAAAGNLEPFKDMAREVIE---RLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        22 ~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      ++.|.||||.||..|+.+++++|++.|.+   ++.++..|.||||+|+  ..|+.+++++|++.    +++++.++..|.
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~--~~g~~~iv~~Ll~~----ga~i~~~d~~g~   79 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA--ILGEASTVEKLYAA----GAGVLVAERGGH   79 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCSSCCCTTSC
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHH--hhcccccccccccc----cccccccccccc
Confidence            35677899999999999999999998876   4467788899999999  88999998888875    788888888888


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCcc-----------------------------------------------chhhHH
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQH-----------------------------------------------ENEELE  131 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~-----------------------------------------------~~~~~~  131 (197)
                      ||||+|+..++.+++++|++.......                                               ++..+.
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            999998888888888888765432111                                               000011


Q ss_pred             hhHHHH---------HHH-------hhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccC
Q 043188          132 SRVGAA---------RQM-------IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       132 ~~~~~~---------~~~-------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                      +++..+         ..+       ....+..|.||||+|+..++.+++++|+++|++++ .+|..|.||||+|+..++.
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin-~~d~~g~t~L~~A~~~~~~  238 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT-ARMYGGRTPLGSALLRPNP  238 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHTSSCH
T ss_pred             ccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCCH
Confidence            111111         111       12346679999999999999999999999999988 8899999999999998875


Q ss_pred             C
Q 043188          196 N  196 (197)
Q Consensus       196 ~  196 (197)
                      +
T Consensus       239 ~  239 (255)
T d1oy3d_         239 I  239 (255)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.6e-30  Score=181.50  Aligned_cols=164  Identities=23%  Similarity=0.228  Sum_probs=139.9

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..|.||||+|+..|+.+++++++..+......+..+.+++++++  ..++.+++++|++.    +.+++.++..|.|
T Consensus        32 ~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Ll~~----~~d~~~~d~~g~t  105 (223)
T d1uoha_          32 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA--SAGRDEIVKALLGK----GAQVNAVNQNGCT  105 (223)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTCCC
T ss_pred             CcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccc--cccccchhHHHhcc----CceeEeeCCCCCc
Confidence            46677889999999999999999998887766666667888999988  88888888888875    7788889999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------------HHHhhccCCCCchHHHHHHhcCCHHHH
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------------RQMIRMTNNEKNTALHEAVCHQNVDVV  164 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~a~~~~~~~~~  164 (197)
                      |||+|+..++.+++++|++.|.+++..+....+++...               +.+++..+..|.||||.|+..|+.+++
T Consensus       106 pL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v  185 (223)
T d1uoha_         106 PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA  185 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             hhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHH
Confidence            99999999999999999999988877665544443322               334678899999999999999999999


Q ss_pred             HHHhhcCCCcccccccCCCcHHHHHH
Q 043188          165 ELLTKEDPDYQYSANNYGKTPLYMAA  190 (197)
Q Consensus       165 ~~Ll~~g~~~~~~~~~~g~tpl~~A~  190 (197)
                      ++|++.|++++ .+|..|+||||+|.
T Consensus       186 ~~LL~~Gad~~-~~d~~g~tpl~~A~  210 (223)
T d1uoha_         186 KLLVSQGASIY-IENKEEKTPLQVAK  210 (223)
T ss_dssp             HHHHHTTCCSC-CCCTTSCCHHHHCC
T ss_pred             HHHHHCCCCCC-CCCCCCCCHHHHHH
Confidence            99999999998 99999999999984

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.3e-29  Score=168.90  Aligned_cols=145  Identities=27%  Similarity=0.272  Sum_probs=130.9

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHH
Q 043188           26 DPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAA  105 (197)
Q Consensus        26 ~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~  105 (197)
                      .|||+.|++.|+.++|+.|+++|.+++ .+..|.||||+|+  ..++.+.+..+...    ..........+.++++.++
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   75 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAA--QYGHFSTTEVLLRA----GVSRDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHH--HHTCHHHHHHHHTT----TCCTTCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccc--cccccccccccccc----ccccccccccccccccccc
Confidence            489999999999999999999998664 6789999999999  99999988877664    5555556677889999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcH
Q 043188          106 KFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTP  185 (197)
Q Consensus       106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tp  185 (197)
                      ...+.++++++...+.+...                  .+..|.||||+|+..|+.+++++|++.|++++ .+|..|.||
T Consensus        76 ~~~~~~~~~~l~~~~~~~~~------------------~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~-~~d~~g~Tp  136 (153)
T d1awcb_          76 SEGHANIVEVLLKHGADVNA------------------KDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTA  136 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred             ccccceeeecccccCCcccc------------------ccccCchHHHhhhhcchhheeeeccccccCCc-ccCCCCCCH
Confidence            99999999999999988765                  89999999999999999999999999999998 899999999


Q ss_pred             HHHHHhcccCC
Q 043188          186 LYMAADYRSSN  196 (197)
Q Consensus       186 l~~A~~~~~~~  196 (197)
                      |++|+.+|+.+
T Consensus       137 l~~A~~~g~~e  147 (153)
T d1awcb_         137 FDISIDNGNED  147 (153)
T ss_dssp             HHHHHHTTCHH
T ss_pred             HHHHHHcCCHH
Confidence            99999999865

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-29  Score=168.61  Aligned_cols=147  Identities=22%  Similarity=0.162  Sum_probs=133.6

Q ss_pred             cCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHH
Q 043188           24 QIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHV  103 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~  103 (197)
                      || ++||.|+..|++++|+.|+++|++++.+|..|.||||+|+   .++.+++++|++.    +.+++.++..+.++++.
T Consensus         1 ~~-~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~---~~~~ei~~~Ll~~----~a~~~~~~~~~~~~l~~   72 (156)
T d1ihba_           1 WG-NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK---LGNPEIARRLLLR----GANPDLKDRTGFAVIHD   72 (156)
T ss_dssp             CH-HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC---SSCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             Ch-HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc---ccccccccccccc----ccccccccccCcccccc
Confidence            45 7899999999999999999999999999999999999776   4788999998885    88899999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCC
Q 043188          104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGK  183 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  183 (197)
                      ++..+..+++++++..+..+..                  .+..|.+|+|+|+..++.+++++|+++++...+.+|..|+
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~------------------~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~  134 (156)
T d1ihba_          73 AARAGFLDTLQTLLEFQADVNI------------------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD  134 (156)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSC
T ss_pred             cccccccccccccccccccccc------------------cccccccccccccccccccccccccccccccccccCCCCC
Confidence            9999999999999999988765                  8899999999999999999999999998743349999999


Q ss_pred             cHHHHHHhcccCC
Q 043188          184 TPLYMAADYRSSN  196 (197)
Q Consensus       184 tpl~~A~~~~~~~  196 (197)
                      ||||+|+..++.+
T Consensus       135 TpL~~A~~~~~~~  147 (156)
T d1ihba_         135 TACDLARLYGRNE  147 (156)
T ss_dssp             CHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHH
Confidence            9999999998764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=2.4e-29  Score=182.58  Aligned_cols=167  Identities=13%  Similarity=0.087  Sum_probs=134.5

Q ss_pred             ccCCHHHHHHHHcCCcHHHHHHHHH--------HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCC
Q 043188           23 SQIDPNLFKAAAAGNLEPFKDMARE--------VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVN   94 (197)
Q Consensus        23 ~~~~~~l~~a~~~g~~~~v~~Ll~~--------g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~   94 (197)
                      ..|.||||+|+..|+.++|+.|+.+        |.+++.+|..|.||||+|+  +.|+.+++++|++.    +++++.++
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~--~~g~~~iv~~Ll~~----Gad~n~~~  104 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAV--LARRRRLVAYLMKA----GADPTIYN  104 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCSCCCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccc--cccccccccccccc----cccccccc
Confidence            3588999999999999999888765        4467788999999999999  99999999999986    88999999


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCC---CCccchhh------------------------------------------
Q 043188           95 AKGDTPLHVAAKFGHSDIVRVLVERAK---LPQHENEE------------------------------------------  129 (197)
Q Consensus        95 ~~~~t~l~~a~~~~~~~~~~~ll~~~~---~~~~~~~~------------------------------------------  129 (197)
                      ..|.||+++|+..++.+++.++.....   .+......                                          
T Consensus       105 ~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (277)
T d2fo1e1         105 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK  184 (277)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSS
T ss_pred             ccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccc
Confidence            999999999999999998888755321   00000000                                          


Q ss_pred             --HHhhHH----------------HHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHh
Q 043188          130 --LESRVG----------------AARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD  191 (197)
Q Consensus       130 --~~~~~~----------------~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~  191 (197)
                        +...+.                ..+...+..+..|.||||+|+..|+.+++++|++.|++++ .+|..|+||||+|++
T Consensus       185 ~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin-~~d~~G~T~L~~A~~  263 (277)
T d2fo1e1         185 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE-AVDATDHTARQLAQA  263 (277)
T ss_dssp             CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCSSSCCHHHHHHH
T ss_pred             cCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHH
Confidence              000000                0012245578899999999999999999999999999998 899999999999999


Q ss_pred             cccCC
Q 043188          192 YRSSN  196 (197)
Q Consensus       192 ~~~~~  196 (197)
                      .|+.+
T Consensus       264 ~~~~~  268 (277)
T d2fo1e1         264 NNHHN  268 (277)
T ss_dssp             TTCHH
T ss_pred             cCCHH
Confidence            99865

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-28  Score=165.15  Aligned_cols=143  Identities=21%  Similarity=0.266  Sum_probs=129.4

Q ss_pred             HHHHHHHHcCCcHHHHHHHHH-HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHH
Q 043188           27 PNLFKAAAAGNLEPFKDMARE-VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAA  105 (197)
Q Consensus        27 ~~l~~a~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~  105 (197)
                      ..|+.|+..|+++.|+.|+.. +.+++..|..|.||||+|+  . ++.+++++|++.    +.+++..+..+.+|+++++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~--~-~~~~~v~~Ll~~----~~~~~~~~~~~~~~l~~~~   76 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM--F-GSTAIALELLKQ----GASPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC--T-TCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc--c-cccccccccccc----ccccccccccccccccccc
Confidence            359999999999999999986 6788888999999999988  5 677888888775    7788888999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcH
Q 043188          106 KFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTP  185 (197)
Q Consensus       106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tp  185 (197)
                      ..++.++++++++.+.+++.                  .+..|.||||+|+..|+.+++++|+ .|++++ .+|..|+||
T Consensus        77 ~~~~~~~~~~~l~~~~~~n~------------------~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~-~~d~~G~Tp  136 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGADVNV------------------PDGTGALPIHLAVQEGHTAVVSFLA-AESDLH-RRDARGLTP  136 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSCC------------------CCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT-CCCTTSCCH
T ss_pred             cccccccccccccccccccc------------------ccCCCCeeecccccccccccccccc-cccccc-ccCCCCCCH
Confidence            99999999999999998776                  8899999999999999999999887 688887 899999999


Q ss_pred             HHHHHhcccCC
Q 043188          186 LYMAADYRSSN  196 (197)
Q Consensus       186 l~~A~~~~~~~  196 (197)
                      ||+|+..|+.+
T Consensus       137 L~~A~~~g~~~  147 (156)
T d1bd8a_         137 LELALQRGAQD  147 (156)
T ss_dssp             HHHHHHSCCHH
T ss_pred             HHHHHHcCCHH
Confidence            99999999865

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.6e-29  Score=175.44  Aligned_cols=167  Identities=19%  Similarity=0.191  Sum_probs=131.0

Q ss_pred             ccCCHHHHHHHHcCCcHHHHHHHHH----HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           23 SQIDPNLFKAAAAGNLEPFKDMARE----VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        23 ~~~~~~l~~a~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      +.|.||||.||..|+.++++.|++.    |.+++.+|..|.||||+|+  ..|+.+++++|++.    ++..+.....+.
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~--~~~~~~iv~~Ll~~----ga~~~~~~~~~~   74 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV--ITTLPSVVRLLVTA----GASPMALDRHGQ   74 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehh--cccccccccccccc----cccccccccccc
Confidence            3589999999999999999999874    5567788899999999999  99999999999885    777777788888


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccch--------------------------------------hhHHhhHH-----
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHEN--------------------------------------EELESRVG-----  135 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~--------------------------------------~~~~~~~~-----  135 (197)
                      ++++.|....+.++++.+...........                                      ......+.     
T Consensus        75 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~  154 (228)
T d1k1aa_          75 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN  154 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             cccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHh
Confidence            88888888888887776655322211100                                      00000000     


Q ss_pred             ----------HHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          136 ----------AARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       136 ----------~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                                ..+...+..+..|.||||+|+..|+.+++++|++.|++++ .+|..|+||||+|++.|+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n-~~d~~G~TpL~~A~~~~~~d  224 (228)
T d1k1aa_         155 NSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS-LKNCHNDTPLMVARSRRVID  224 (228)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCTTTTCSSHHHHH
T ss_pred             hhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHhCCCcc
Confidence                      1122346678899999999999999999999999999998 99999999999999988754

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=4.8e-29  Score=182.45  Aligned_cols=97  Identities=21%  Similarity=0.182  Sum_probs=88.4

Q ss_pred             ccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHH
Q 043188           23 SQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLH  102 (197)
Q Consensus        23 ~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~  102 (197)
                      ..+.|+|+.||..|+++.|++|+++|++++..|..|.||||+|+  ..|+.+++++|++.    +......+..+.+||+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~--~~g~~eiv~~Ll~~----~~~~~~~~~~~~~~L~  111 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC--IDDNVDMVKFLVEN----GANINQPDNEGWIPLH  111 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSCCHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHH--hcCCceeeeeeccc----cccccccccccccccc
Confidence            34568999999999999999999999999999999999999999  99999999999986    7777778888999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCcc
Q 043188          103 VAAKFGHSDIVRVLVERAKLPQH  125 (197)
Q Consensus       103 ~a~~~~~~~~~~~ll~~~~~~~~  125 (197)
                      .++..++.+++++|++.+.....
T Consensus       112 ~a~~~~~~~~~~~l~~~~~~~~~  134 (291)
T d1s70b_         112 AAASCGYLDIAEYLISQGAHVGA  134 (291)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             ccccccccchhhcccccCccccc
Confidence            99999999999999998876654

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.6e-28  Score=170.55  Aligned_cols=152  Identities=16%  Similarity=0.111  Sum_probs=97.3

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHh---cccccCCcHHHHHHHhhhcccccHHHHHHH---------------
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERL---LTAKTKNTILHINIISQERENVSTKFVAEI---------------   82 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~---~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~---------------   82 (197)
                      .+.+|.||||+|+..|+.+++++|++.|.+++   ..+..|.+|+|+++  ..+..++++.++..               
T Consensus        30 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d1ixva_          30 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC--SVGNLEVVKSLYDRPLKPDLNKITNQGVT  107 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHH--HHTCHHHHHHHHSSSSCCCTTCCCTTSCC
T ss_pred             cCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence            44556666666666666666666666655543   33445566666655  44443333332221               


Q ss_pred             ----------------HHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCC
Q 043188           83 ----------------LEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNN  146 (197)
Q Consensus        83 ----------------l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                                      +...+...+.++..|.||||+|+..++.+++++|++.+..                 .++..+.
T Consensus       108 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----------------~in~~d~  170 (229)
T d1ixva_         108 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS-----------------AVNWQDK  170 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCC-----------------CSCCCCT
T ss_pred             ccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccc-----------------ccccccc
Confidence                            1122333444445556666666666666666666655432                 1335888


Q ss_pred             CCchHHHHHHhcCCHHHHHHHhh-cCCCcccccccCCCcHHHHHHhc
Q 043188          147 EKNTALHEAVCHQNVDVVELLTK-EDPDYQYSANNYGKTPLYMAADY  192 (197)
Q Consensus       147 ~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~tpl~~A~~~  192 (197)
                      .|.||||+|+..++.+++++|++ .|++++ .+|..|+|||++|+..
T Consensus       171 ~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~-~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         171 QGWTPLFHALAEGHGDAAVLLVEKYGAEYD-LVDNKGAKAEDVALNE  216 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHHCCCSC-CCCTTSCCTGGGCSCH
T ss_pred             ccCCchhhhcccccHHHHHHHHHhcCCCCC-CcCCCCCCHHHHHhhH
Confidence            99999999999999999999996 599988 8999999999998754

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1.9e-27  Score=165.91  Aligned_cols=156  Identities=15%  Similarity=0.152  Sum_probs=130.7

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHH---------------------
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFV---------------------   79 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l---------------------   79 (197)
                      .+..|.||||+||..|+.+++++|++.|.+++..+..+.++++.++  ..++.......                     
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV--AADAMGVFQILLRNRATNLNARMHDGTTPLIL   96 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence            3567889999999999999999999999988888888999988887  44333222111                     


Q ss_pred             ---------HHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCch
Q 043188           80 ---------AEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNT  150 (197)
Q Consensus        80 ---------~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  150 (197)
                               .+.+...+.+++.++..|.|||++++..+..++++.++..+.++..                  .|..|.|
T Consensus        97 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~------------------~d~~g~T  158 (209)
T d1ot8a_          97 AARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA------------------QDDKDET  158 (209)
T ss_dssp             HHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTCCC
T ss_pred             cccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccc------------------ccccccc
Confidence                     1113334677788888999999999999999999999999888765                  8999999


Q ss_pred             HHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCCC
Q 043188          151 ALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM  197 (197)
Q Consensus       151 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~i  197 (197)
                      |||+|+..|+.+++++|++.|++++ .+|..|.||||+|++.|+.+|
T Consensus       159 pL~~A~~~g~~~~v~~Ll~~gad~n-~~d~~g~Tpl~~A~~~~~~~i  204 (209)
T d1ot8a_         159 PLFLAAREGSYEASKALLDNFANRE-ITDHMDRLPRDVASERLHHDI  204 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccchhccccHHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999988 999999999999999998653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-28  Score=172.63  Aligned_cols=157  Identities=25%  Similarity=0.200  Sum_probs=126.8

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHh--CCcccccCCCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEK--CPSLLLQVNAKG   97 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~   97 (197)
                      ..+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+++  ..+..++++.++.....  ...........+
T Consensus        34 ~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  111 (221)
T d1iknd_          34 FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC--EQGCLASVGVLTQSCTTPHLHSILKATNYNG  111 (221)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH--HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred             cCCCCCCcccccccccccccccccccccccccccccccccccccccc--ccccccccchhhhhccccccccccccccccc
Confidence            45667888888888888888888888888888888888888888888  88888888877764211  112233344457


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccc
Q 043188           98 DTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYS  177 (197)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  177 (197)
                      .||||.|+..++.+++++++..+.....                 ..+..|.||||+|+..|+.+++++|++.|+|++ .
T Consensus       112 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~-----------------~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~-~  173 (221)
T d1iknd_         112 HTCLHLASIHGYLGIVELLVSLGADVNA-----------------QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-R  173 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTC-----------------CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC-C
T ss_pred             chhhhHHhhcCChhheeeecccCccccc-----------------ccccCCCCccccccccccHHHHHHHHhcCCccc-c
Confidence            8888888888888888888888877655                 255689999999999999999999999999988 9


Q ss_pred             cccCCCcHHHHHHhcccCC
Q 043188          178 ANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       178 ~~~~g~tpl~~A~~~~~~~  196 (197)
                      +|..|+||||+|+..++.+
T Consensus       174 ~~~~G~tpl~~A~~~~~~~  192 (221)
T d1iknd_         174 VTYQGYSPYQLTWGRPSTR  192 (221)
T ss_dssp             CCTTCCCGGGGCTTSSCHH
T ss_pred             cCCCCCCHHHHHHHCCCHH
Confidence            9999999999999887643

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.4e-27  Score=175.73  Aligned_cols=163  Identities=17%  Similarity=0.166  Sum_probs=124.3

Q ss_pred             cccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcc---cccHHHHHHHHHhCCcccccCCCCCC
Q 043188           22 QSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERE---NVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        22 ~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      +..|.||||+||..|+.++|+.|++.|++++.+|..|.||||.||  ..++   ...+..+++.+.   ..+..++..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~--~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV--KSVNNYDSGTFEALLDYLY---PCLILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHH--HSSHHHHTTCHHHHHHHHG---GGGGEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhh--hcccchhhhhHHHHHHHHh---hhhhhcccccC
Confidence            578899999999999999999999999999999999999999999  7764   455566666543   34667788999


Q ss_pred             cHHHHHHHhCCH----H--------HHHHHHHcCCCCccchhhH-------------------HhhHHHHHHHhhccCCC
Q 043188           99 TPLHVAAKFGHS----D--------IVRVLVERAKLPQHENEEL-------------------ESRVGAARQMIRMTNNE  147 (197)
Q Consensus        99 t~l~~a~~~~~~----~--------~~~~ll~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~  147 (197)
                      ||||+++..+..    .        ++.++...+..........                   ..........++.+|..
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            999988765442    2        2344444433322111000                   01111223347889999


Q ss_pred             CchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHH
Q 043188          148 KNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA  190 (197)
Q Consensus       148 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~  190 (197)
                      |+||||+|++.|+.+++++|++.|++++ .+|..|.|||++|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~GAd~~-~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDYGADPF-IANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCCTT-CCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHcC
Confidence            9999999999999999999999999998 99999999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.8e-27  Score=171.51  Aligned_cols=169  Identities=16%  Similarity=0.159  Sum_probs=131.0

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHHHhc-ccccCCcHHHHHHHhhhcccccHHHHHHHHH-------------------
Q 043188           25 IDPNLFKAAAAGNLEPFKDMAREVIERLL-TAKTKNTILHINIISQERENVSTKFVAEILE-------------------   84 (197)
Q Consensus        25 ~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~-------------------   84 (197)
                      ++++|+.|++.|++++|++|+++|++++. .+..|.||||+|+  ..|+.+++++|++...                   
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~--~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV--QMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH--HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHH--HcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            46899999999999999999999999884 4567999999999  9999999999877500                   


Q ss_pred             ----------hCC---------------------------------cc----------cccCCCCCCcHHHHHHHhCCHH
Q 043188           85 ----------KCP---------------------------------SL----------LLQVNAKGDTPLHVAAKFGHSD  111 (197)
Q Consensus        85 ----------~~~---------------------------------~~----------~~~~~~~~~t~l~~a~~~~~~~  111 (197)
                                ...                                 ..          .......|.||||+|+..++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                      000                                 00          0111225899999999999999


Q ss_pred             HHHHHHHc-CCCCccchhhHHhh-------------------HHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhh-c
Q 043188          112 IVRVLVER-AKLPQHENEELESR-------------------VGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK-E  170 (197)
Q Consensus       112 ~~~~ll~~-~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~  170 (197)
                      ++++|++. +.++...+......                   +...+.+++..+..|.||||+|+..++.+++++|++ .
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            99999975 55665543322111                   111233456778899999999999999999999997 5


Q ss_pred             CCCcccccccCCCcHHHHHHhcccCC
Q 043188          171 DPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       171 g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      |++++ .+|..|.||||+|++.|+.+
T Consensus       243 g~din-~~d~~G~TpL~~A~~~~~~e  267 (285)
T d1wdya_         243 HIEIN-DTDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             SCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCCc-CCCCCCCCHHHHHHHcCCHH
Confidence            88988 99999999999999998764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-25  Score=158.03  Aligned_cols=163  Identities=21%  Similarity=0.247  Sum_probs=124.8

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHH-HHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHH
Q 043188           26 DPNLFKAAAAGNLEPFKDMAREV-IERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVA  104 (197)
Q Consensus        26 ~~~l~~a~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a  104 (197)
                      ++.|+.++..|+++.|+.++..+ ..++.+|..|+||||+|+  ..|+.+++++++..    +.........+.++++.+
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa--~~g~~e~~~~l~~~----~~~~~~~~~~~~~~~~~~   77 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWAC--SAGHTEIVEFLLQL----GVPVNDKDDAGWSPLHIA   77 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHH--HHTCHHHHHHHHHH----TCCSCCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHH--Hhhhhccccccccc----cccccccccccccccccc
Confidence            56789999999999998888764 455689999999999999  99999999999886    666667777899999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCccchhhHHhhHHHH---------------HHHhhccCCCCchHHHHHHhcCCHHHHHHHhh
Q 043188          105 AKFGHSDIVRVLVERAKLPQHENEELESRVGAA---------------RQMIRMTNNEKNTALHEAVCHQNVDVVELLTK  169 (197)
Q Consensus       105 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  169 (197)
                      +..++.+++++|++.+.+++..+..+.+++..+               +.+++..+.+|.||||+|+..++.+++++|.+
T Consensus        78 ~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~  157 (223)
T d1uoha_          78 ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY  157 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcc
Confidence            999999999999999998877544433332221               22344556666667777766666666666666


Q ss_pred             cCCCcccccccCCCcHHHHHHhcccC
Q 043188          170 EDPDYQYSANNYGKTPLYMAADYRSS  195 (197)
Q Consensus       170 ~g~~~~~~~~~~g~tpl~~A~~~~~~  195 (197)
                      .+.+++ .+|..|.||||+|+..|+.
T Consensus       158 ~~~~i~-~~d~~g~TpL~~Aa~~g~~  182 (223)
T d1uoha_         158 YKASTN-IQDTEGNTPLHLACDEERV  182 (223)
T ss_dssp             TTCCSC-CCCTTCCCHHHHHHHTTCH
T ss_pred             ccceee-eccCCCCceeccccccCcH
Confidence            666666 6666777777777766653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-27  Score=151.99  Aligned_cols=120  Identities=15%  Similarity=0.047  Sum_probs=109.4

Q ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC-cHHHH
Q 043188           25 IDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD-TPLHV  103 (197)
Q Consensus        25 ~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-t~l~~  103 (197)
                      ..++||.|+..|++++|++|+++|.+++.++..|.||||+|+   .|+.+++++|++.    +.+++.++..+. ||||+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~---~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM---MGSARVAELLLLH----GAEPNCADPATLTRPVHD   75 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC---TTCHHHHHHHHTT----TCCCCCCCTTTCCCHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc---ccccccccccccc----cccccccccccccccccc
Confidence            456899999999999999999999999999999999999665   4889999998885    888998888765 69999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhh
Q 043188          104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK  169 (197)
Q Consensus       104 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  169 (197)
                      |+..|+.+++++|++.|++++.                  .|..|+||||+|+..|+.+++++|+.
T Consensus        76 A~~~g~~~~v~~Ll~~ga~~~~------------------~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          76 AAREGFLDTLVVLHRAGARLDV------------------RDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSC------------------CCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccc------------------ccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999998776                  99999999999999999999999974

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.3e-26  Score=173.55  Aligned_cols=151  Identities=24%  Similarity=0.257  Sum_probs=126.6

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcH
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTP  100 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~  100 (197)
                      .+..+.++|+.|+..++.+.++.++..+...+..+..|.|||+.|+  ..++.+++++|++.    +.+++..+..+.||
T Consensus       227 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~--~~~~~~i~~~Ll~~----g~~~~~~~~~~~t~  300 (408)
T d1n11a_         227 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVA--QEGHVPVADVLIKH----GVMVDATTRMGYTP  300 (408)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH--HHTCHHHHHHHHHH----TCCTTCCCSSCCCH
T ss_pred             cCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhh--hcCcHHHHHHHHHC----CCcccccccccccc
Confidence            3445667788888888888888887777766677777888888888  88888888887775    77777777778888


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccccc
Q 043188          101 LHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANN  180 (197)
Q Consensus       101 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (197)
                      ||.++..++.++++++++.|.+++.                  .|.+|.||||+|++.|+.+++++|+++|++++ .+|.
T Consensus       301 L~~~~~~~~~~~~~~ll~~g~~in~------------------~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n-~~d~  361 (408)
T d1n11a_         301 LHVASHYGNIKLVKFLLQHQADVNA------------------KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSS  361 (408)
T ss_dssp             HHHHHHSSCSHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCS
T ss_pred             chhhcccCcceeeeeeccccccccc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCC
Confidence            8888888888888888888877665                  89999999999999999999999999999998 9999


Q ss_pred             CCCcHHHHHHhcccCC
Q 043188          181 YGKTPLYMAADYRSSN  196 (197)
Q Consensus       181 ~g~tpl~~A~~~~~~~  196 (197)
                      .|+||||+|++.|+.+
T Consensus       362 ~G~t~L~~A~~~~~~~  377 (408)
T d1n11a_         362 DGTTPLAIAKRLGYIS  377 (408)
T ss_dssp             SSCCHHHHHHHTTCHH
T ss_pred             CCCCHHHHHHHcCCHH
Confidence            9999999999998854

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=6.1e-28  Score=154.03  Aligned_cols=107  Identities=20%  Similarity=0.139  Sum_probs=101.3

Q ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHH
Q 043188           26 DPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAA  105 (197)
Q Consensus        26 ~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~  105 (197)
                      +|||++|++.|+.+.|+.|+++|.+++.++..|.||||+|+  ..++.++++++++.    +.+++.++..|.||||+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~--~~~~~~~~~~ll~~----g~din~~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA--DCGQLEILEFLLLK----GADINAPDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHH--HHSTTTHHHHHHHS----SCTTTCCSSSCSCHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccc--cccccccccccccc----cceeeecccccccchhhhh
Confidence            47999999999999999999999999999999999999999  99999999999885    8899999999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHH
Q 043188          106 KFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV  156 (197)
Q Consensus       106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~  156 (197)
                      .+++.+++++|+++|++++.                  .|..|.||||+|.
T Consensus        77 ~~~~~~~v~~Ll~~Gad~~~------------------~d~~G~t~l~~a~  109 (118)
T d1myoa_          77 YEGHVSCVKLLLSKGADKTV------------------KGPDGLTALEATD  109 (118)
T ss_dssp             TTTCCHHHHHHHTTCCCSSS------------------SSSSTCCCCCTCS
T ss_pred             hcCchhhhhhhhccccccee------------------eCCCCCCHHHHHh
Confidence            99999999999999999876                  8999999999984

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=171.20  Aligned_cols=160  Identities=24%  Similarity=0.305  Sum_probs=122.5

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHH
Q 043188           27 PNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAK  106 (197)
Q Consensus        27 ~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~  106 (197)
                      ||||.||..|+.++|++|+++|.+++..|..|.||||+|+  ..|+.+++++|++.    +++++.++..|.||||+|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~--~~g~~~iv~~Ll~~----gadi~~~~~~g~t~L~~A~~   75 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA--RAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAAR   75 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHH--HHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHC----cCCCCCCCCCCCCHHHHHHH
Confidence            7999999999999999999999999999999999999999  99999999999997    88999999999999999999


Q ss_pred             hCCHHHHHHHHHcCCCCccchhhHHhh------------------------------------------------HHHHH
Q 043188          107 FGHSDIVRVLVERAKLPQHENEELESR------------------------------------------------VGAAR  138 (197)
Q Consensus       107 ~~~~~~~~~ll~~~~~~~~~~~~~~~~------------------------------------------------~~~~~  138 (197)
                      .++.+++++|+................                                                +...+
T Consensus        76 ~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~  155 (408)
T d1n11a_          76 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD  155 (408)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999998766543322111000                                                00011


Q ss_pred             HHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcc
Q 043188          139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYR  193 (197)
Q Consensus       139 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~  193 (197)
                      ..++..+..|.+|||.|+..++.+++++|++.|++++ ..+..|.||++++....
T Consensus       156 ~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~t~l~~~~~~~  209 (408)
T d1n11a_         156 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQN  209 (408)
T ss_dssp             CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTT
T ss_pred             CCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCccc-ccCCCCCCcchhhhccc
Confidence            1234455566666777666666666677766666665 66666667766666544

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.5e-26  Score=147.49  Aligned_cols=108  Identities=20%  Similarity=0.201  Sum_probs=101.9

Q ss_pred             CcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHH
Q 043188           59 NTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR  138 (197)
Q Consensus        59 ~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  138 (197)
                      .|||++|+  +.|+.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.|++++.             
T Consensus         3 ~tpL~~A~--~~g~~~~v~~Ll~~----g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~-------------   63 (118)
T d1myoa_           3 DKEFMWAL--KNGDLDEVKDYVAK----GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-------------   63 (118)
T ss_dssp             HHHHHHHH--HTTCHHHHHHHHTT----TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTC-------------
T ss_pred             ChHHHHHH--HCCCHHHHHHHHHh----hhccccccccccccccccccccccccccccccccceeee-------------
Confidence            48999999  99999999999885    889999999999999999999999999999999998776             


Q ss_pred             HHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHh
Q 043188          139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD  191 (197)
Q Consensus       139 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~  191 (197)
                           .+..|.||||+|+..++.+++++|++.|++++ .+|..|.|||++|..
T Consensus        64 -----~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~-~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          64 -----PDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-VKGPDGLTALEATDN  110 (118)
T ss_dssp             -----CSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSS-SSSSSTCCCCCTCSS
T ss_pred             -----cccccccchhhhhhcCchhhhhhhhcccccce-eeCCCCCCHHHHHhH
Confidence                 89999999999999999999999999999998 999999999998843

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.1e-26  Score=148.46  Aligned_cols=121  Identities=21%  Similarity=0.242  Sum_probs=109.1

Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHH
Q 043188           27 PNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAK  106 (197)
Q Consensus        27 ~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~  106 (197)
                      ++|+.|+..|+.++|+.|+++|.+++.+|..|.||||+|+  ..++.++++++++.    +.+++.+|..|+||||+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~--~~~~~~~~~~ll~~----g~~~~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV--CAGHTEIVKFLVQF----GVNVNAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH--HHTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccc--cccccccccccccc----ccccccccccCcccccccch
Confidence            5799999999999999999999999999999999999999  99999999999997    88899999999999999999


Q ss_pred             hCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHH--HhcCCHHHHHHHhhc
Q 043188          107 FGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEA--VCHQNVDVVELLTKE  170 (197)
Q Consensus       107 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a--~~~~~~~~~~~Ll~~  170 (197)
                      +++.+++++|+++|+++..                 .....+.||++++  ...|+.+++++|+..
T Consensus        77 ~g~~~~v~~Ll~~ga~v~~-----------------~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          77 CNNVQVCKFLVESGAAVFA-----------------MTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             TTCHHHHHHHHHTTCCTTC-----------------CCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCccc-----------------ccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999999999999876                 1334678876665  577889999999854

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2e-26  Score=162.28  Aligned_cols=155  Identities=22%  Similarity=0.244  Sum_probs=128.7

Q ss_pred             cCCHHHHHHHHcCCcHHHH----HHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           24 QIDPNLFKAAAAGNLEPFK----DMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        24 ~~~~~l~~a~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      +|.||||+|+..|+.+.+.    .+...+.+++.+|..|.||||+|+  ..++.+++++|++.    +++++.++..|.|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~--~~~~~~iv~~L~~~----g~d~~~~d~~g~t   74 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV--ITNQPEIAEALLGA----GCDPELRDFRGNT   74 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHH--HTTCHHHHHCCCSC----CCCSCCCCTTCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccc--cccccccccccccc----ccccccccccccc
Confidence            4889999999999975544    555567778889999999999999  99999999888775    8889999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccc
Q 043188          100 PLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSAN  179 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  179 (197)
                      ||++++..+..++++.++..+......            .........|.||||.|+..++.+++++|++.|+..+...+
T Consensus        75 ~l~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~  142 (221)
T d1iknd_          75 PLHLACEQGCLASVGVLTQSCTTPHLH------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP  142 (221)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSS------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             ccccccccccccccchhhhhccccccc------------ccccccccccchhhhHHhhcCChhheeeecccCcccccccc
Confidence            999999999999999999987654331            11223556789999999999999999999999999886667


Q ss_pred             cCCCcHHHHHHhcccCC
Q 043188          180 NYGKTPLYMAADYRSSN  196 (197)
Q Consensus       180 ~~g~tpl~~A~~~~~~~  196 (197)
                      ..|.||||+|++.|+.+
T Consensus       143 ~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_         143 CNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             TTCCCHHHHHHHTTCHH
T ss_pred             cCCCCccccccccccHH
Confidence            78999999999998754

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=5.7e-25  Score=157.67  Aligned_cols=140  Identities=24%  Similarity=0.320  Sum_probs=115.6

Q ss_pred             ccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhh
Q 043188           54 TAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESR  133 (197)
Q Consensus        54 ~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~  133 (197)
                      .+++|.||||+||  +.++.+++++|++. ......++.++..|.||||+|+..++.+++++|++.|+++...+..+.++
T Consensus         5 i~~~G~t~Lh~A~--~~~~~~~v~~Ll~~-~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           5 VTEDGDTALHLAV--IHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCTTCCCHHHHHH--HTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCcCCCCHHHHHH--HcCCHHHHHHHHHc-CCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchh
Confidence            4568999999999  99999999999986 11233477788899999999999999999999999999887765443333


Q ss_pred             HHHH--------------------------------------------------------------HHHhhccCCCCchH
Q 043188          134 VGAA--------------------------------------------------------------RQMIRMTNNEKNTA  151 (197)
Q Consensus       134 ~~~~--------------------------------------------------------------~~~~~~~~~~g~t~  151 (197)
                      +..+                                                              +..++..+..|.||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            2211                                                              22246678899999


Q ss_pred             HHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          152 LHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       152 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      ||+|+..++.+++++|++.+++.....+..|.||||+|+..|+.+
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~  206 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS  206 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             ccccccccccccccchhcccccccccccccccccccccccccHHH
Confidence            999999999999999999999988677889999999999988754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.8e-24  Score=143.68  Aligned_cols=124  Identities=17%  Similarity=0.178  Sum_probs=109.9

Q ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHhcc------cccCCcHHHHHHHhhh---cccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           28 NLFKAAAAGNLEPFKDMAREVIERLLT------AKTKNTILHINIISQE---RENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        28 ~l~~a~~~g~~~~v~~Ll~~g~~~~~~------~~~g~t~lh~a~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      .|+.|++.+++..+..++..|.++..+      +..|.||||+|+  +.   +..+++++|++.    +.+++.++..|.
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~--~~~~~~~~~iv~~Ll~~----gadin~~d~~g~   82 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV--RSVDRTSLHIVDFLVQN----SGNLDKQTGKGS   82 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHH--HHCCTTTHHHHHHHHHH----CSCTTCCCTTCC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHH--HhcCCCCHHHHHHHHHc----CCChhhhhhhhc
Confidence            478999999999999999988876632      567999999999  65   456788888886    889999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcc
Q 043188           99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQ  175 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  175 (197)
                      ||||+|+..++.+++++|+++|+++..                  .|..|.||||+|++.|+.+++++|++.+....
T Consensus        83 TpLh~A~~~~~~~~v~~Ll~~gad~~~------------------~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          83 TALHYCCLTDNAECLKLLLRGKASIEI------------------ANESGETPLDIAKRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             cccccccccccccccccccccCccccc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            999999999999999999999999876                  89999999999999999999999998766543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-25  Score=143.83  Aligned_cols=114  Identities=14%  Similarity=0.243  Sum_probs=103.7

Q ss_pred             cCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHH
Q 043188           57 TKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA  136 (197)
Q Consensus        57 ~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  136 (197)
                      .+.++||+|+  ..|+.+++++|++.    +.+++.++..|.||+|+|+ .++.+++++|+++|++++.           
T Consensus         2 p~~~~L~~Aa--~~G~~~~v~~Ll~~----gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~-----------   63 (125)
T d1bi7b_           2 PSADWLATAA--ARGRVEEVRALLEA----GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-----------   63 (125)
T ss_dssp             CSTTHHHHHH--HHTCHHHHHHHHTT----TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-----------
T ss_pred             CChhHHHHHH--HCCCHHHHHHHHHc----CCccccccccccccccccc-ccccccccccccccccccc-----------
Confidence            3578999999  99999999999985    8899999999999999775 7899999999999998776           


Q ss_pred             HHHHhhccCCCCc-hHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          137 ARQMIRMTNNEKN-TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       137 ~~~~~~~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                             .+..+. ||||+|++.|+.+++++|++.|++++ .+|..|+||||+|+++|+.+
T Consensus        64 -------~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~G~T~l~~A~~~g~~~  116 (125)
T d1bi7b_          64 -------ADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRD  116 (125)
T ss_dssp             -------CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHH
T ss_pred             -------ccccccccccccccccccccccccccccccccc-cccCCCCCHHHHHHHcCCHH
Confidence                   666665 69999999999999999999999998 99999999999999999865

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.4e-24  Score=137.75  Aligned_cols=113  Identities=21%  Similarity=0.120  Sum_probs=100.4

Q ss_pred             cHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHH
Q 043188           60 TILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQ  139 (197)
Q Consensus        60 t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  139 (197)
                      ++|+.|+  ..|+.+++++|++.    +.+++.++..|.||||+|+..++.+++++|++.+++++.              
T Consensus         3 ~lL~~A~--~~G~~~~v~~Ll~~----g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~--------------   62 (130)
T d1ycsb1           3 ALLLDSS--LEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA--------------   62 (130)
T ss_dssp             HHHHHHH--HHTCHHHHHHHTST----TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC--------------
T ss_pred             HHHHHHH--HcCCHHHHHHHHHc----CCCcccccccccccccccccccccccccccccccccccc--------------
Confidence            6899999  99999999999886    889999999999999999999999999999999998776              


Q ss_pred             HhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccccccCCCcHHHHH--HhcccCC
Q 043188          140 MIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA--ADYRSSN  196 (197)
Q Consensus       140 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpl~~A--~~~~~~~  196 (197)
                          .|..|+||||+|+..|+.+++++|+++|++++......++||++++  ...|+.+
T Consensus        63 ----~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~e  117 (130)
T d1ycsb1          63 ----ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ  117 (130)
T ss_dssp             ----CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCC
T ss_pred             ----ccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHH
Confidence                8999999999999999999999999999999833345688998776  4555554

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-23  Score=140.27  Aligned_cols=127  Identities=15%  Similarity=0.125  Sum_probs=114.0

Q ss_pred             cccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCC
Q 043188           18 GEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKG   97 (197)
Q Consensus        18 ~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   97 (197)
                      ....+..|.||||.|+ .|+.+.+++|++.+.+++..+..|.+|+++++  ..++.++++++++.    +.+++.++..|
T Consensus        29 ~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~~----~~~~n~~~~~~  101 (156)
T d1bd8a_          29 PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAA--RTGFLDTLKVLVEH----GADVNVPDGTG  101 (156)
T ss_dssp             TTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHT----TCCSCCCCTTS
T ss_pred             CCccCCCCCccccccc-cccccccccccccccccccccccccccccccc--cccccccccccccc----ccccccccCCC
Confidence            3356778999999987 48899999999999999988889999999999  99999999999885    78889999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhc
Q 043188           98 DTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE  170 (197)
Q Consensus        98 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  170 (197)
                      .||||+|+..++.+++++|+ .++++..                  .+..|.||||+|+..|+.+++++|+++
T Consensus       102 ~t~L~~A~~~~~~~i~~~L~-~~~~~~~------------------~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         102 ALPIHLAVQEGHTAVVSFLA-AESDLHR------------------RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHH-TTSCTTC------------------CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             Ceeecccccccccccccccc-ccccccc------------------cCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999999887 5666654                  899999999999999999999999864

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=3e-23  Score=150.09  Aligned_cols=131  Identities=15%  Similarity=0.192  Sum_probs=111.5

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHH-----------------
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI-----------------   82 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~-----------------   82 (197)
                      ..+..|.||||+|+..|+.++|++|+++|++++.++..|.|||++|+  ..++.++.+++...                 
T Consensus        69 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  146 (277)
T d2fo1e1          69 AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAA--ANRDFGMMVYMLNSTKLKGDIEELDRNGMTA  146 (277)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH--HTTCHHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred             ccCCCCCeeeccccccccccccccccccccccccccccccccccchh--hhcchhhhhhhhhcccccccccccccccchh
Confidence            45678999999999999999999999999999988999999999999  66655444433221                 


Q ss_pred             ------------------------------------------------------------HHhCCcccccCCCCCCcHHH
Q 043188           83 ------------------------------------------------------------LEKCPSLLLQVNAKGDTPLH  102 (197)
Q Consensus        83 ------------------------------------------------------------l~~~~~~~~~~~~~~~t~l~  102 (197)
                                                                                  +...+.+.+.++..|.||||
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~  226 (277)
T d2fo1e1         147 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM  226 (277)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred             HHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHH
Confidence                                                                        23344666667778999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhc
Q 043188          103 VAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE  170 (197)
Q Consensus       103 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  170 (197)
                      +|+..++.+++++|++.|++++.                  .|..|.||||+|+..|+.+++++|+++
T Consensus       227 ~A~~~g~~~iv~~Ll~~gadin~------------------~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         227 LAAQEGRIEVVMYLIQQGASVEA------------------VDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSC------------------CCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHCcCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999876                  899999999999999999999999864

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-22  Score=147.24  Aligned_cols=140  Identities=20%  Similarity=0.184  Sum_probs=117.6

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHH-HHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMARE-VIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD   98 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (197)
                      .....+.||||+|++.|+.+++++|+++ |.+++..+..|.++++.+.  ..+.......+++.+.+.+++++.++..|.
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~  220 (285)
T d1wdya_         143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL--LSSDDSDVEAITHLLLDHGADVNVRGERGK  220 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH--HCSCTTTHHHHHHHHHHTTCCSSCCCTTSC
T ss_pred             hhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCccccccc--ccccchHHHHHHHHHHHCCCCCCccCCCCC
Confidence            3455688999999999999999999985 6778888889999988877  555444333344444445888999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHc-CCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcccc
Q 043188           99 TPLHVAAKFGHSDIVRVLVER-AKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYS  177 (197)
Q Consensus        99 t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  177 (197)
                      ||||+|+..++.+++++|+.. +.+++.                  .|.+|.||||+|+..++.+++++|++.||+++ .
T Consensus       221 t~L~~a~~~~~~~~v~~lL~~~g~din~------------------~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n-~  281 (285)
T d1wdya_         221 TPLILAVEKKHLGLVQRLLEQEHIEIND------------------TDSDGKTALLLAVELKLKKIAELLCKRGASTD-C  281 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC-C
T ss_pred             CccchhhhcCcHHHHHHHHHcCCCCCcC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-c
Confidence            999999999999999999975 777665                  89999999999999999999999999999998 7


Q ss_pred             ccc
Q 043188          178 ANN  180 (197)
Q Consensus       178 ~~~  180 (197)
                      +|.
T Consensus       282 ~d~  284 (285)
T d1wdya_         282 GDL  284 (285)
T ss_dssp             SSC
T ss_pred             ccC
Confidence            763

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-22  Score=134.70  Aligned_cols=127  Identities=21%  Similarity=0.169  Sum_probs=115.9

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCc
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDT   99 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t   99 (197)
                      ..+..|.||||.|+ .|+.++++.|++.|.+++..+..|.++++.++  ..+..+.++.++..    +..++..+..+.+
T Consensus        29 ~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~--~~~~~~~~~~l~~~----~~~~~~~~~~~~~  101 (156)
T d1ihba_          29 AQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAA--RAGFLDTLQTLLEF----QADVNIEDNEGNL  101 (156)
T ss_dssp             CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             ccCCcccccccccc-cccccccccccccccccccccccCcccccccc--cccccccccccccc----ccccccccccccc
Confidence            46788999999876 79999999999999999989999999999999  99999999998875    7778889999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCC-CCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcC
Q 043188          100 PLHVAAKFGHSDIVRVLVERAK-LPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKED  171 (197)
Q Consensus       100 ~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  171 (197)
                      |+|+|+..++.+++++|+++++ +..                  ..+..|.||||+|+..++.+++++|+++|
T Consensus       102 ~l~~a~~~~~~~~~~~Ll~~~~~~~~------------------~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         102 PLHLAAKEGHLRVVEFLVKHTASNVG------------------HRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccc------------------ccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999987 433                  38999999999999999999999999886

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=7.2e-22  Score=130.97  Aligned_cols=84  Identities=26%  Similarity=0.378  Sum_probs=77.3

Q ss_pred             CCCCCcHHHHHHHh---CCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhc
Q 043188           94 NAKGDTPLHVAAKF---GHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKE  170 (197)
Q Consensus        94 ~~~~~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  170 (197)
                      +..|.||||+|+..   +..+++++|++.|++++.                  .+..|+||||+|+..|+.+++++|++.
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~------------------~d~~g~TpLh~A~~~~~~~~v~~Ll~~  103 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK------------------QTGKGSTALHYCCLTDNAECLKLLLRG  103 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhh------------------hhhhhcccccccccccccccccccccc
Confidence            56789999999975   567899999999998776                  999999999999999999999999999


Q ss_pred             CCCcccccccCCCcHHHHHHhcccCC
Q 043188          171 DPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       171 g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      |++++ .+|..|.||||+|++.|+.+
T Consensus       104 gad~~-~~d~~g~tpL~~A~~~~~~~  128 (154)
T d1dcqa1         104 KASIE-IANESGETPLDIAKRLKHEH  128 (154)
T ss_dssp             TCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred             Ccccc-ccCCCCCCHHHHHHHcCCHH
Confidence            99998 99999999999999998754

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.86  E-value=3.9e-25  Score=165.49  Aligned_cols=133  Identities=13%  Similarity=0.074  Sum_probs=109.0

Q ss_pred             cccCCHHHHHHHHcCCcHHHHH---HHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCC--CC
Q 043188           22 QSQIDPNLFKAAAAGNLEPFKD---MAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVN--AK   96 (197)
Q Consensus        22 ~~~~~~~l~~a~~~g~~~~v~~---Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~   96 (197)
                      +..+.|+|+.|++.|+.+.++.   |++.|.+++..+..|.||||+||  +.|+.+++++|++.    +++++..+  ..
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa--~~G~~~~v~~Ll~~----g~~~~~~~~~~~  160 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA--ENGHLHVLNRLCEL----APTEIMAMIQAE  160 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH--HTTCHHHHHHHHHS----CTTTHHHHHSHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHH--HCCCHHHHHHHHHc----CCCccccccccC
Confidence            4467899999999999877665   78889988888999999999999  99999999999996    77776654  35


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCcc
Q 043188           97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQ  175 (197)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  175 (197)
                      |.||||+|+.+|+.+++++|++.++....               .+..+..+.||++.|+..|+.+++++|++.|+++.
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~---------------~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEAT---------------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHH---------------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccc---------------cccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            89999999999999999999999876432               22344557788899999999999999999988765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=2.2e-21  Score=134.84  Aligned_cols=152  Identities=21%  Similarity=0.242  Sum_probs=123.7

Q ss_pred             cHHHHHHHHHHHHHhc-ccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHH
Q 043188           38 LEPFKDMAREVIERLL-TAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVL  116 (197)
Q Consensus        38 ~~~v~~Ll~~g~~~~~-~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  116 (197)
                      .++|+.|+++|++++. .|..|.||||+||  ..|+.+++++|+..    +..++.++..+.++++.++...........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~--~~g~~e~v~~Ll~~----g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAA--RFARADAAKRLLDA----GADANSQDNTGRTPLHAAVAADAMGVFQIL   75 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--HTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHH--HcCCHHHHHHHHhh----cccccccccccccccccccccccccccccc
Confidence            4789999999999985 6889999999999  99999999999986    888999999999999999999998876666


Q ss_pred             HHcCCCCccchh-h---------------HHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCCccccccc
Q 043188          117 VERAKLPQHENE-E---------------LESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANN  180 (197)
Q Consensus       117 l~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  180 (197)
                      ............ .               ....+...+..++..+..|.|||+.++..+...+++.+++.+.+++ .+|.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~-~~d~  154 (209)
T d1ot8a_          76 LRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD-AQDD  154 (209)
T ss_dssp             HTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccc-cccc
Confidence            554332222110 0               1111122233456788999999999999999999999999999988 8899


Q ss_pred             CCCcHHHHHHhcccCC
Q 043188          181 YGKTPLYMAADYRSSN  196 (197)
Q Consensus       181 ~g~tpl~~A~~~~~~~  196 (197)
                      .|.||||+|+..|+.+
T Consensus       155 ~g~TpL~~A~~~g~~~  170 (209)
T d1ot8a_         155 KDETPLFLAAREGSYE  170 (209)
T ss_dssp             TCCCHHHHHHHTTCHH
T ss_pred             ccccccchhccccHHH
Confidence            9999999999998754

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=1.3e-23  Score=157.08  Aligned_cols=172  Identities=9%  Similarity=0.047  Sum_probs=122.7

Q ss_pred             cccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhccc--ccCCcHHHHHHHhhhcccccHHHHHHHHHhCCccc---ccCC
Q 043188           20 ISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTA--KTKNTILHINIISQERENVSTKFVAEILEKCPSLL---LQVN   94 (197)
Q Consensus        20 ~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~--~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~   94 (197)
                      ..+..|.||||+|++.|+.++|++|++.|++++..+  ..|.||||+|+  ..|+.+++++|++.    +...   +..+
T Consensus       121 ~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa--~~g~~~iv~~Ll~~----~~~~~~~~~~~  194 (346)
T d2ajaa1         121 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAA--ENGHLHVLNRLCEL----APTEATAMIQA  194 (346)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHH--HTTCHHHHHHHHHS----CGGGHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHH--HHhhHHHHHHHHHc----CCccccccccc
Confidence            456688999999999999999999999998887544  46999999999  99999999999985    4332   3334


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchh--------hHHhhHH-------HHHHHhhccC--------------
Q 043188           95 AKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENE--------ELESRVG-------AARQMIRMTN--------------  145 (197)
Q Consensus        95 ~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--------~~~~~~~-------~~~~~~~~~~--------------  145 (197)
                      ..+.||++.|+.+|+.+++++|++.|+++.....        .......       .....+....              
T Consensus       195 ~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~  274 (346)
T d2ajaa1         195 ENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL  274 (346)
T ss_dssp             HHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHH
T ss_pred             CCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhccccc
Confidence            4567788889999999999999988765432110        0000000       0000011011              


Q ss_pred             --CCCchHHHHHHhcCCHHHHHHHhhcCCCccc----ccccCCCcHHHHHHhcccCCC
Q 043188          146 --NEKNTALHEAVCHQNVDVVELLTKEDPDYQY----SANNYGKTPLYMAADYRSSNM  197 (197)
Q Consensus       146 --~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~----~~~~~g~tpl~~A~~~~~~~i  197 (197)
                        ..+.++++.++..+..+++++|++.+.....    ..+..|+||||+|++.|+.++
T Consensus       275 ~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~  332 (346)
T d2ajaa1         275 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA  332 (346)
T ss_dssp             HHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTH
T ss_pred             ccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHH
Confidence              1234678888889999999999988765331    233468999999999999764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.9e-21  Score=133.04  Aligned_cols=137  Identities=19%  Similarity=0.197  Sum_probs=114.2

Q ss_pred             cCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHH
Q 043188           57 TKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA  136 (197)
Q Consensus        57 ~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  136 (197)
                      +|.||||+||  ..|+.++++.|++.+...+.+++.+|..|.||||+|+..++.+++++|++.++...............
T Consensus         2 dG~TpLh~A~--~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAV--VQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHH--HTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccc
Confidence            6999999999  99999999999998888899999999999999999999999999999999998876644322111110


Q ss_pred             H----------------------------------------------HH-------HhhccCCCCchHHHHHHhcCCHHH
Q 043188          137 A----------------------------------------------RQ-------MIRMTNNEKNTALHEAVCHQNVDV  163 (197)
Q Consensus       137 ~----------------------------------------------~~-------~~~~~~~~g~t~l~~a~~~~~~~~  163 (197)
                      .                                              ..       ........+.++++.|+..+...+
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            0                                              00       012345578899999999999999


Q ss_pred             HHHHhhcCCCcccccccCCCcHHHHHHhcccCC
Q 043188          164 VELLTKEDPDYQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       164 ~~~Ll~~g~~~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                      ++++++.|.+.. .++..|.|||++|+..|+.+
T Consensus       160 ~~~~~~~~~~~~-~~d~~g~t~L~~A~~~g~~~  191 (228)
T d1k1aa_         160 VQLLLQHGANVN-AQMYSGSSALHSASGRGLLP  191 (228)
T ss_dssp             HHHHHHTTCCTT-CBCTTSCBHHHHHHHHTCHH
T ss_pred             hhhhhhhccccc-cccccCcchHHHHHHcCCHH
Confidence            999999999988 89999999999999998754

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.8e-21  Score=128.02  Aligned_cols=123  Identities=20%  Similarity=0.182  Sum_probs=111.7

Q ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcH
Q 043188           21 SQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTP  100 (197)
Q Consensus        21 ~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~  100 (197)
                      .+..|.||||+|+..++.+.++.++.........+..+.++++.++  ...+.+.++++...    +.+.+.++..|.||
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~----~~~~~~~~~~g~T~  103 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA--SEGHANIVEVLLKH----GADVNAKDMLKMTA  103 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH--HHTCHHHHHHHHTT----TCCTTCCCTTSCCH
T ss_pred             cccCCCcccccccccccccccccccccccccccccccccccccccc--ccccceeeeccccc----CCccccccccCchH
Confidence            4678899999999999999999998877666666778889999999  99999999888775    78888899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHH
Q 043188          101 LHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELL  167 (197)
Q Consensus       101 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  167 (197)
                      ||+|+..++.+++++|++.|+++..                  .|..|.||||+|+..|+.+++++|
T Consensus       104 L~~A~~~g~~~iv~~ll~~gad~~~------------------~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         104 LHWATEHNHQEVVELLIKYGADVHT------------------QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHhhhhcchhheeeeccccccCCcc------------------cCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999999999999876                  899999999999999999999976

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=2e-21  Score=136.80  Aligned_cols=131  Identities=18%  Similarity=0.070  Sum_probs=116.7

Q ss_pred             CcccccccCCHHHHHHHHcCCcHHHHHHHHHHHHHhcccccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCC
Q 043188           17 NGEISQSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAK   96 (197)
Q Consensus        17 ~~~~~~~~~~~~l~~a~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   96 (197)
                      .....+..+.++++.++..++.++++.|+..|.+....+..|.||||+|+  ..++.++++.|++.   .+.+++.++..
T Consensus        97 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~Ll~~---~~~~in~~d~~  171 (229)
T d1ixva_          97 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA--SVGSLKLIELLCGL---GKSAVNWQDKQ  171 (229)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH--HHTCHHHHHHHHTT---TCCCSCCCCTT
T ss_pred             cccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhh--hccccccccccccc---ccccccccccc
Confidence            33456667889999999999999999999999888888999999999999  99999999988774   45778899999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHH-cCCCCccchhhHHhhHHHHHHHhhccCCCCchHHHHHHhcCCHHHHHHHhhcCCC
Q 043188           97 GDTPLHVAAKFGHSDIVRVLVE-RAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPD  173 (197)
Q Consensus        97 ~~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  173 (197)
                      |.||||+|+..++.+++++|++ .|+++..                  .|..|+||||+|+.   .+++++|++.|+|
T Consensus       172 g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~------------------~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         172 GWTPLFHALAEGHGDAAVLLVEKYGAEYDL------------------VDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHCCCSCC------------------CCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             cCCchhhhcccccHHHHHHHHHhcCCCCCC------------------cCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            9999999999999999999996 5888776                  89999999999984   5899999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.83  E-value=1.1e-20  Score=137.47  Aligned_cols=64  Identities=19%  Similarity=0.139  Sum_probs=58.4

Q ss_pred             ccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcc
Q 043188           56 KTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQH  125 (197)
Q Consensus        56 ~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~  125 (197)
                      ..+.|+|++||  ..|+.+++++|++.    |++++.++..|.||||+|+..|+.+++++|++++.+...
T Consensus        38 ~~~~t~l~~A~--~~G~~~~v~~Ll~~----Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~  101 (291)
T d1s70b_          38 FDDGAVFLAAC--SSGDTEEVLRLLER----GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ  101 (291)
T ss_dssp             ECHHHHHHHHH--HHTCHHHHHHHHHH----CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCchHHHHHH--HcCCHHHHHHHHHC----CCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccc
Confidence            34569999999  99999999999987    899999999999999999999999999999999887555

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=7.1e-18  Score=123.44  Aligned_cols=114  Identities=18%  Similarity=0.163  Sum_probs=85.5

Q ss_pred             cccCCcHHHHHHHhhhcccccHHHHHHHHHhCCcccccCCCCCCcHHHHHHHhCCH-------HHHHHHHHcCCCCccch
Q 043188           55 AKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHS-------DIVRVLVERAKLPQHEN  127 (197)
Q Consensus        55 ~~~g~t~lh~a~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~-------~~~~~ll~~~~~~~~~~  127 (197)
                      |..|.||||+||  ..|+.+++++|++.    +++++.+|..|+||||.|+..++.       ++++++...        
T Consensus       104 D~~G~T~LH~Aa--~~g~~~~v~~Ll~~----gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~--------  169 (301)
T d1sw6a_         104 DEHGNTPLHWLT--SIANLELVKHLVKH----GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC--------  169 (301)
T ss_dssp             STTCCCHHHHHH--HTTCHHHHHHHHHT----TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG--------
T ss_pred             CCCCCCHHHHHH--HcCCHHHHHHHHHC----CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh--------
Confidence            788999999999  99999999999986    899999999999999999987652       233333221        


Q ss_pred             hhHHhhHHHHHHHhhccCCCCchHHHHHHhcCC----HH--------HHHHHhhcCCC----------------------
Q 043188          128 EELESRVGAARQMIRMTNNEKNTALHEAVCHQN----VD--------VVELLTKEDPD----------------------  173 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~----~~--------~~~~Ll~~g~~----------------------  173 (197)
                                   +...|..|+||||.++..+.    ..        ++.++++.+..                      
T Consensus       170 -------------~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (301)
T d1sw6a_         170 -------------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD  236 (301)
T ss_dssp             -------------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------C
T ss_pred             -------------hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchH
Confidence                         22478889999998875433    22        23344443322                      


Q ss_pred             ---------------cccccccCCCcHHHHHHhcccCC
Q 043188          174 ---------------YQYSANNYGKTPLYMAADYRSSN  196 (197)
Q Consensus       174 ---------------~~~~~~~~g~tpl~~A~~~~~~~  196 (197)
                                     ++ .+|..|+||||+|++.|+.+
T Consensus       237 ~~~~~~~~~~~~~~~in-~~D~~G~TpLh~A~~~g~~~  273 (301)
T d1sw6a_         237 SILENLDLKWIIANMLN-AQDSNGDTCLNIAARLGNIS  273 (301)
T ss_dssp             HHHHHCSHHHHHHHTTT-CCCTTSCCHHHHHHHHCCHH
T ss_pred             HHHHHHhhHHHHhcCcc-CCCCCCCCHHHHHHHcCCHH
Confidence                           23 67889999999999998754