Citrus Sinensis ID: 043203

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610---

MDRERAVRAANAMKAIGIVDKQVQTVLVNLLELFNWNWEYIEAEDYRALKDTYFDFKENQGVEDENERVMGQDRLERPSKKLHLGKQKDHVSSAMANSSTTLALIKAEMPMPTSGRGSKKPSQLCLTDIRRGSSSQIPNALKEAEIPMPTSGQGSKKPSQLCLTDIRRGSSSQIPNAQVSCKRKDLTSSHLAFRGRKSTHNGESQAVYLKQPLDKHGFSRSSRNSATSHCSRKSIKKKTMQPISSVTHHAEPISVVCPAGPGSSAGSSTGKHLVKSLASQHERTINEDDASVSNDSASSNNNFSIASTAMGEVKIFLNCNPAFERPNFQSPNFDAVFKYLEFKNLISGKVKPQFSVKKLLEGLCDTFLELGNKSTSGPVAIGSSPEAIINVEDSLSATGLKKQASRVCDSERDLNKKSSNRSNCLNSSNLATVQQQPVTCNEKRSIRITDIAKGLENVRIPLVDETCNEDLPKFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGDCLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT

ccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccHHHHHHHcccEEccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccEEEEEEEEc

ccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccEEccccccccccEEEEEcccccEEEEEEccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHEEEcccccccccccccccHHcccccccccccccccccccHHccccccccccccccccccccccEEEEccccccccccccEEccccccccccccEEEEEcccccccccEEEEcccEEEcccEEEccHHccccccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHcccccccccEEEEcccccccccccccccccccccccHHHHHHHHHcccccccccEEEEccEEEEEEEEEc

MDRERAVRAANAMKAIGIVDKQVQTVLVNLLELFNWNWEYIEAEDYRALKDTYFDfkenqgvedenervmgqdrlerpskklhlgkqkdhvssamanSSTTLALIKaempmptsgrgskkpsqlcltdirrgsssqipnalkeaeipmptsgqgskkpsqlcltdirrgsssqipnaqvsckrkdltsshlafrgrksthngesqAVYLkqpldkhgfsrssrnsatshcsrksikkktmqpissvthhaepisvvcpagpgssagsstGKHLVKSLASQHErtineddasvsndsassnnnfsIASTAMGEVKIFlncnpaferpnfqspnfDAVFKYLEFknlisgkvkpqfSVKKLLEGLCDTFLElgnkstsgpvaigsspeaIINVEDslsatglkkqasrvcdserdlnkkssnrsnclnssnlatvqqqpvtcnekrSIRITDIAKglenvriplvdetcnedlpkftyipqnviYQSAYVHISLarisdedccsncsgdclslsipcactretggefaytqqglLKEEFLSACMsmkkgpceehlvycqdcpiersnneycpekckgHIVRKFIKECWrkcgcsmqcqnrIVQQGITCKLQVRMT

MDRERAVRAANamkaigivdkqvQTVLVNLLELFNWNWEYIEAEDYRALKDTYFDFKenqgvedenervmgqdrlerpskklhlgkqkdhvssamaNSSTTLALIKAEMpmptsgrgskkpsqLCLTDIRRGSSSQIPNALKEaeipmptsgqgskkpSQLCLTDIRRgsssqipnaqvsckrkdltsshlafrgrksthngesqAVYLKQPldkhgfsrssrnsatshcsrksikkktmqpiSSVTHHAEPISVVCPAGPGSSAGSSTGKHLVKSLASQHERTINeddasvsndsasSNNNFSIASTAMGEVKIFLNCNPAFERPNFQSPNFDAVFKYLEFKNLISGKVKPQFSVKKLLEGLCDTFLELGNKSTSGPVAIGSSPEAIINVEDSlsatglkkqasrvcdserdlnkkssnrsnclnssnlatvqqqpvtcnekrsiritdiakglenvriplVDETCNEDLPKFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGDCLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGcsmqcqnrivqqgitcklqvrmt

MDRERAVRAANAMKAIGIVDKQVQTVLVNLLELFNWNWEYIEAEDYRALKDTYFDFKENQGVEDENERVMGQDRLERPSKKLHLGKQKDHVSSAMANSSTTLALIKAEMPMPTSGRGSKKPSQLCLTDIRRGSSSQIPNALKEAEIPMPTSGQGSKKPSQLCLTDIRRGSSSQIPNAQVSCKRKDLTSSHLAFRGRKSTHNGESQAVYLKQPLDKHGFSRSSRNSATSHCSRKSIKKKTMQPISSVTHHAEPISVVCpagpgssagsstgKHLVKSLASQHERTIneddasvsndsassnnnfsiasTAMGEVKIFLNCNPAFERPNFQSPNFDAVFKYLEFKNLISGKVKPQFSVKKLLEGLCDTFLELGNKSTSGPVAIGSSPEAIINVEDSLSATGLKKQASRVCDSERDlnkkssnrsnclnssnlATVQQQPVTCNEKRSIRITDIAKGLENVRIPLVDETCNEDLPKFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGDCLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT

**********NAMKAIGIVDKQVQTVLVNLLELFNWNWEYIEAEDYRALKDTYFDFK********************************************************************************************************************************************************************************************************************************************************ASTAMGEVKIFLNCNPAFERPNFQSPNFDAVFKYLEFKNLISGKVKPQFSVKKLLEGLCDTFLELGN*****************************************************************VTCNEKRSIRITDIAKGLENVRIPLVDETCNEDLPKFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGDCLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQ****

****RAV*AANAMKAIGIVDKQVQTVLVNLLELFNWNWEYIEAEDYRALKDTY***********************************************************************************************************************************************************************************************************************************************************************************************EFKNLISGKVKPQFSVKKLLEGLCDTFLELG******************************************************NSS****************SIRITDIAKGLENVRIPLVDETCNEDLPKFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGDCLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNN*YCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT

*********ANAMKAIGIVDKQVQTVLVNLLELFNWNWEYIEAEDYRALKDTYFDFKENQGVEDENERVMGQDRLERPS*****************NSSTTLALIKAEMP*************LCLTDIRRGSSSQIPNALKEAEIPM************LCLTDIRRGSSSQIPNAQVSCKRKDLTSSHLAFRGRKSTHNGESQAVYLKQPLDK******************************VTHHAEPISVVCPAG*************************************SSNNNFSIASTAMGEVKIFLNCNPAFERPNFQSPNFDAVFKYLEFKNLISGKVKPQFSVKKLLEGLCDTFLELGNKSTSGPVAIGSSPEAIINVEDSLSAT************************NCLNSSNLATVQQQPVTCNEKRSIRITDIAKGLENVRIPLVDETCNEDLPKFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGDCLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT

MDRERAVRAANAMKAIGIVDKQVQTVLVNLLELFNWNWEYIEAEDYRALKDTYFDFK***********************************************************************************************************************************************************LDKH*******************KKKTMQPISSVTHHAEPISVVCPA***************************************SNNNFSIASTAMGEVKIFLNCNPAFERPNFQSPNFDAVFKYLEFKNLISGKVKPQFSVKKLLEGLCDTFLELGNK**************************************************CLNSSNLATVQQQPVTCNEKRSIRITDIAKGLENVRIPLVDETCNEDLPKFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGDCLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		613	2.2.26 [Sep-21-2011]
Q8W595		492	Histone-lysine N-methyltr	yes	no	0.370	0.461	0.544	1e-68
Q9FNC7		717	Histone-lysine N-methyltr	no	no	0.497	0.425	0.386	2e-52
Q946J2		734	Histone-lysine N-methyltr	no	no	0.456	0.381	0.361	6e-41
Q8C267		713	Histone-lysine N-methyltr	yes	no	0.194	0.166	0.252	5e-06
Q9Z148		1263	Histone-lysine N-methyltr	no	no	0.185	0.090	0.263	0.0002
Q9FF80		670	Histone-lysine N-methyltr	no	no	0.221	0.202	0.197	0.0003
Q96KQ7		1210	Histone-lysine N-methyltr	yes	no	0.185	0.094	0.263	0.0003

>sp\|Q8W595\|SUVR4_ARATH Histone-lysine N-methyltransferase SUVR4 OS=Arabidopsis thaliana GN=SUVR4 PE=2 SV=2	Back alignment and function desciption

 Score =  261 bits (667), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 129/237 (54%), Positives = 163/237 (68%), Gaps = 10/237 (4%)

Query: 386 EAIINVEDS-----LSATGLKKQASRVCDSERDLNKKSSNRSNCLNSSNLATVQQQPVTC 440
           +AI +VED       S+ G + +  +V DS   L K    RS    SS +  VQ+QP   
Sbjct: 74  DAIYSVEDENKQSEGSSNGNRGKNLKVIDSPATLKKTYETRSASSGSS-IQVVQKQPQLS 132

Query: 441 N----EKRSIRITDIAKGLENVRIPLVDETCNEDLPKFTYIPQNVIYQSAYVHISLARIS 496
           N     K   RI DI KG E+V+IPLVD+  +E +PKFTYIP N++YQSAY+H+SLARIS
Sbjct: 133 NGDRKRKYKSRIADITKGSESVKIPLVDDVGSEAVPKFTYIPHNIVYQSAYLHVSLARIS 192

Query: 497 DEDCCSNCSGDCLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYC 556
           DEDCC+NC G+CLS   PC C RET GE+AYT++GLLKE+FL  C+ MKK P     VYC
Sbjct: 193 DEDCCANCKGNCLSADFPCTCARETSGEYAYTKEGLLKEKFLDTCLKMKKEPDSFPKVYC 252

Query: 557 QDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613
           +DCP+ER +++    KC GH++RKFIKECWRKCGC MQC NR+VQ+GI C+LQV  T
Sbjct: 253 KDCPLERDHDKGTYGKCDGHLIRKFIKECWRKCGCDMQCGNRVVQRGIRCQLQVYFT 309

Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp\|Q9FNC7\|SUVR2_ARATH Histone-lysine N-methyltransferase SUVR2 OS=Arabidopsis thaliana GN=SUVR2 PE=2 SV=2	Back alignment and function description

>sp\|Q946J2\|SUVR1_ARATH Histone-lysine N-methyltransferase SUVR1 OS=Arabidopsis thaliana GN=SUVR1 PE=2 SV=2	Back alignment and function description

>sp\|Q8C267\|SETB2_MOUSE Histone-lysine N-methyltransferase SETDB2 OS=Mus musculus GN=Setdb2 PE=2 SV=2	Back alignment and function description

>sp\|Q9Z148\|EHMT2_MOUSE Histone-lysine N-methyltransferase EHMT2 OS=Mus musculus GN=Ehmt2 PE=1 SV=2	Back alignment and function description

>sp\|Q9FF80\|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Arabidopsis thaliana GN=SUVH1 PE=2 SV=1	Back alignment and function description

>sp\|Q96KQ7\|EHMT2_HUMAN Histone-lysine N-methyltransferase EHMT2 OS=Homo sapiens GN=EHMT2 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		613
356533657		704	PREDICTED: histone-lysine N-methyltransf	0.849	0.740	0.402	1e-107
356574896		749	PREDICTED: histone-lysine N-methyltransf	0.902	0.738	0.383	1e-103
356504119		677	PREDICTED: histone-lysine N-methyltransf	0.796	0.720	0.387	5e-98
255561971		620	set domain protein, putative [Ricinus co	0.525	0.519	0.563	8e-98
359480051		848	PREDICTED: histone-lysine N-methyltransf	0.973	0.704	0.354	1e-91
225433249		859	PREDICTED: histone-lysine N-methyltransf	0.983	0.701	0.350	1e-85
356536852		794	PREDICTED: histone-lysine N-methyltransf	0.902	0.696	0.342	3e-83
147864337		893	hypothetical protein VITISV_003700 [Viti	0.959	0.658	0.352	1e-82
356545896		857	PREDICTED: histone-lysine N-methyltransf	0.926	0.662	0.338	2e-81
449445812		747	PREDICTED: histone-lysine N-methyltransf	0.893	0.733	0.352	1e-78

>gi\|356533657\|ref\|XP_003535377.1\| PREDICTED: histone-lysine N-methyltransferase SUVR4-like [Glycine max]	Back alignment and taxonomy information

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 247/614 (40%), Positives = 342/614 (55%), Gaps = 93/614 (15%)

Query: 5   RAVRAANAMKAIGIVDKQVQTVLVNLLELFNWNWEYIEAEDYRALKDTYFDFKENQGVED 64
           R ++A NAM+++GI D++V+ VL NLL+L++ NWE IE ++YR L D YF+ KE++  E 
Sbjct: 6   RVIKAYNAMRSLGISDEEVKPVLKNLLQLYDRNWELIEEDNYRTLIDAYFELKEDKQTEG 65

Query: 65  ENERVMGQDRLERPSKKLHLGKQKDHVSSAMANSSTTLALIKAEMPMPTSGRGSKKPSQL 124
           + +  +      +P  KLHL    D  +SA  NSS  L++   E+P              
Sbjct: 66  KRKAPISYLDGRKPKHKLHL-VDGDIQASATDNSSEGLSIEDTEIP-------------- 110

Query: 125 CLTDIRRGSSSQIPNALKEAEIPMPTSGQGSKKPSQLCLTDIRRGSSSQIPNAQVSCKRK 184
                        PN  K+  I          KPSQ  +  +   +SSQ     VS K  
Sbjct: 111 -------------PNVFKQKII----------KPSQTSIGHMEPTTSSQALQT-VSSKVD 146

Query: 185 DLTSSH-LAFRGRKSTHNGESQAVYLKQPLDKHGFSRSSRNSATSHCSRKSIKKKTMQP- 242
            +++   +A R RK      S A + + P+ +    R  R + +S   +K +    M P 
Sbjct: 147 GISTLPCMAARDRKLHRGKASAAGHCEDPIVETSNPRIQRENISSDHHQKEL----MTPR 202

Query: 243 ISSVTHHAEPISVVCPAGPGSSAGSSTGKHLVKSLASQHERTINEDDASVSNDSA-SSNN 301
              +  H  P+S         S+ +S G    KSL++ ++    ED  S  N+S  +   
Sbjct: 203 TEKLKLHLGPVST----SYNVSSNASNGNCRAKSLSALYQNVHKEDATSACNNSKRTQKG 258

Query: 302 NFSIASTAMGEVKIFLNCNPAFERPNFQSPNFDAVFKYLEFKNLISGK-VKPQFSVKKLL 360
           N  IAS+ +GE+KI LNC  A  +PNF+ P+ DAV K +E K L +   V+PQ S+ KLL
Sbjct: 259 NIDIASSPLGEIKISLNCEVALGQPNFRIPDLDAVMKSIEEKYLKAHMIVEPQSSMVKLL 318

Query: 361 EGLCDTFLELGNKSTSGPVAIGSSPEAIINVEDSLSATGLKKQASRVCDSERDLNKKSSN 420
           + LC ++L+LG                      SLS  G                    +
Sbjct: 319 DDLCGSYLKLGL---------------------SLSPNG--------------------S 337

Query: 421 RSNCLNSSNLATVQQQPVTCNEKRSIR-ITDIAKGLENVRIPLVDETCNEDLPKFTYIPQ 479
            S   NS N+  +  Q VT ++K S   + DI KG ENV+I L+DET +ED+P+F YIP 
Sbjct: 338 TSKFANSRNVTCLPLQTVTEDDKNSFHFLDDITKGSENVKISLLDETGSEDVPQFNYIPY 397

Query: 480 NVIYQSAYVHISLARISDEDCCSNCSGDCLSLSIPCACTRETGGEFAYTQQGLLKEEFLS 539
           NVIYQ A V+ISLARI+DE CC++C+GDCLSLS+PCAC++ETGGEFAYT +GLLK++FL 
Sbjct: 398 NVIYQDANVNISLARIADEGCCADCAGDCLSLSLPCACSQETGGEFAYTPRGLLKDDFLK 457

Query: 540 ACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRI 599
           ACMSMK  P + H VYCQ+CP+ERS N+  PE CKGH+VRKFIKECWRKCGC MQC NR+
Sbjct: 458 ACMSMKLEPLDHHFVYCQECPLERSRNDIVPEPCKGHLVRKFIKECWRKCGCDMQCGNRV 517

Query: 600 VQQGITCKLQVRMT 613
           VQ+G+ CKLQV +T
Sbjct: 518 VQRGLRCKLQVFLT 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356574896\|ref\|XP_003555579.1\| PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356504119\|ref\|XP_003520846.1\| PREDICTED: histone-lysine N-methyltransferase SUVR4-like [Glycine max]	Back alignment and taxonomy information

>gi\|255561971\|ref\|XP_002521994.1\| set domain protein, putative [Ricinus communis] gi\|223538798\|gb\|EEF40398.1\| set domain protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359480051\|ref\|XP_002270320.2\| PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225433249\|ref\|XP_002282057.1\| PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356536852\|ref\|XP_003536947.1\| PREDICTED: histone-lysine N-methyltransferase SUVR1-like [Glycine max]	Back alignment and taxonomy information

>gi\|147864337\|emb\|CAN83006.1\| hypothetical protein VITISV_003700 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356545896\|ref\|XP_003541369.1\| PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Glycine max]	Back alignment and taxonomy information

>gi\|449445812\|ref\|XP_004140666.1\| PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		613
TAIR\|locus:2100885		492	SUVR4 [Arabidopsis thaliana (t	0.370	0.461	0.523	2.6e-63
TAIR\|locus:2172502		740	SUVR2 [Arabidopsis thaliana (t	0.489	0.405	0.377	1.7e-62
TAIR\|locus:2024229		734	SUVR1 "homolog of SU(var)3-9 1	0.265	0.222	0.469	1.2e-46
UNIPROTKB\|F1MXG0		700	SETDB2 "Uncharacterized protei	0.122	0.107	0.3	0.00011
ZFIN\|ZDB-GENE-040724-44		1059	ehmt1a "euchromatic histone-ly	0.132	0.076	0.325	0.0003
UNIPROTKB\|Q96T68		719	SETDB2 "Histone-lysine N-methy	0.122	0.104	0.275	0.00082

TAIR\|locus:2100885 SUVR4 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 124/237 (52%), Positives = 157/237 (66%)

Query:   386 EAIINVEDSL-----SATGLKKQASRVCDSERDXXXXXXXXXXXXXXXXXATVQQQPVTC 440
             +AI +VED       S+ G + +  +V DS                      VQ+QP   
Sbjct:    74 DAIYSVEDENKQSEGSSNGNRGKNLKVIDSPA-TLKKTYETRSASSGSSIQVVQKQPQLS 132

Query:   441 N--EKRSI--RITDIAKGLENVRIPLVDETCNEDLPKFTYIPQNVIYQSAYVHISLARIS 496
             N   KR    RI DI KG E+V+IPLVD+  +E +PKFTYIP N++YQSAY+H+SLARIS
Sbjct:   133 NGDRKRKYKSRIADITKGSESVKIPLVDDVGSEAVPKFTYIPHNIVYQSAYLHVSLARIS 192

Query:   497 DEDCCSNCSGDCLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYC 556
             DEDCC+NC G+CLS   PC C RET GE+AYT++GLLKE+FL  C+ MKK P     VYC
Sbjct:   193 DEDCCANCKGNCLSADFPCTCARETSGEYAYTKEGLLKEKFLDTCLKMKKEPDSFPKVYC 252

Query:   557 QDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613
             +DCP+ER +++    KC GH++RKFIKECWRKCGC MQC NR+VQ+GI C+LQV  T
Sbjct:   253 KDCPLERDHDKGTYGKCDGHLIRKFIKECWRKCGCDMQCGNRVVQRGIRCQLQVYFT 309

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA;IDA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR\|locus:2172502 SUVR2 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024229 SUVR1 "homolog of SU(var)3-9 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MXG0 SETDB2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040724-44 ehmt1a "euchromatic histone-lysine N-methyltransferase 1a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96T68 SETDB2 "Histone-lysine N-methyltransferase SETDB2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	OsI_18069	Putative uncharacterized protein (821 aa)
		(Oryza sativa Indica)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		613
pfam05033		103	pfam05033, Pre-SET, Pre-SET motif	1e-14
pfam10440		61	pfam10440, WIYLD, Ubiquitin-binding WIYLD domain	1e-11
smart00468		98	smart00468, PreSET, N-terminal to some SET domains	2e-10

>gnl\|CDD\|218393 pfam05033, Pre-SET, Pre-SET motif	Back alignment and domain information

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 40/150 (26%), Positives = 51/150 (34%), Gaps = 48/150 (32%)

Query: 450 DIAKGLENVRIPLVDETCNEDLPK-FTYIPQNVIYQSAYVHISLARISDEDCCSNCSGDC 508
           DI+ G E+V IP+V+E   E  P  FTYI + +        I    +     CS C   C
Sbjct: 1   DISNGKESVPIPVVNEVDLEGPPPNFTYINEYIPGSGVS-DIPNEFLV---GCS-CKDGC 55

Query: 509 LSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEY 568
              S  CAC +  GG FAY + G L+ E                                
Sbjct: 56  -PDSSNCACLQLNGGGFAYDKNGRLRVE-------------------------------- 82

Query: 569 CPEKCKGHIVRKFIKECWRKCGCSMQCQNR 598
                        I EC  +C C   C NR
Sbjct: 83  ---------PGPPIYECNSRCKCDPSCPNR 103

This protein motif is a zinc binding motif. It contains 9 conserved cysteines that coordinate three zinc ions. It is thought that this region plays a structural role in stabilising SET domains. Length = 103

>gnl\|CDD\|204490 pfam10440, WIYLD, Ubiquitin-binding WIYLD domain	Back alignment and domain information

>gnl\|CDD\|128744 smart00468, PreSET, N-terminal to some SET domains	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		613
PF10440		65	WIYLD: Ubiquitin-binding WIYLD domain; InterPro: I	99.92
PF05033		103	Pre-SET: Pre-SET motif; InterPro: IPR007728 This r	99.88
smart00468		98	PreSET N-terminal to some SET domains. A Cys-rich	99.85
KOG1082		364	consensus Histone H3 (Lys9) methyltransferase SUV3	99.77
KOG1141		1262	consensus Predicted histone methyl transferase [Ch	99.69
KOG1141		1262	consensus Predicted histone methyl transferase [Ch	98.42
smart00466		155	SRA SET and RING finger associated domain. Domain	91.78
smart00570		51	AWS associated with SET domains. subdomain of PRES	85.9
PF07499		47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	84.83
PF02182		155	SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This	83.53

>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices	Back alignment and domain information

Probab=99.92  E-value=3.4e-26  Score=188.76  Aligned_cols=59  Identities=46%  Similarity=0.753  Sum_probs=57.1

Q ss_pred             ChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCccccccchhHHHHHhhhhhcccc
Q 043203            2 DRERAVRAANAMKAIGIVDKQVQTVLVNLLELFNWNWEYIEAEDYRALKDTYFDFKENQ   60 (613)
Q Consensus         2 ~~~r~~~A~~am~~lG~~~~~v~~vlk~Ll~~y~~nW~~iEe~~Yr~l~dai~d~~e~~   60 (613)
                      .++||+||+|||++|||++++|+|||++||++||+||+||||+|||+|+|||||.|+++
T Consensus         7 ~~~R~daA~dam~~lG~~~~~v~~vl~~LL~lY~~nW~lIEed~Y~~L~dai~e~~e~q   65 (65)
T PF10440_consen    7 GNERIDAALDAMRQLGFSKKQVRPVLKNLLKLYDGNWELIEEDNYRVLADAIFEEQEEQ   65 (65)
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhhhcccHHHHHHHHHHHhhcC
Confidence            37999999999999999999999999999999999999999999999999999999875

It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity

>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain	Back alignment and domain information

>smart00468 PreSET N-terminal to some SET domains	Back alignment and domain information

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]	Back alignment and domain information

>smart00466 SRA SET and RING finger associated domain	Back alignment and domain information

>smart00570 AWS associated with SET domains	Back alignment and domain information

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction	Back alignment and domain information

>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		613
3k5k_A		283	Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin		3e-04
2o8j_A		281	Human Euchromatic Histone Methyltransferase 2 Lengt		4e-04

>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283

Back alignment and structure

Iteration: 1

Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 62/168 (36%), Gaps = 51/168 (30%) Query: 450 DIAKGLENVRIPLVDETCNEDLPK-FTYIPQNVIYQSAYVHISLARISDEDCCSNCSGD- 507 D+A+G ENV IP V+ E P+ + YI +N + + ++ + C +CS Sbjct: 15 DVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDCSSSN 74 Query: 508 --CLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSN 565 C LSI C Y + G L +EF Sbjct: 75 CLCGQLSIRCW----------YDKDGRLLQEF---------------------------- 96 Query: 566 NEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613 I I EC + C C C+NR+VQ GI +LQ+ T Sbjct: 97 ---------NKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRT 135

PyMOL of 3k5k

>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		613
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	8e-23
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	4e-22
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	1e-19
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	8e-19
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	5e-13
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	1e-10
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	5e-06
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	1e-04

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287	Back alignment and structure

 Score = 98.1 bits (244), Expect = 8e-23
 Identities = 40/186 (21%), Positives = 62/186 (33%), Gaps = 45/186 (24%)

Query: 429 NLATVQQQPVTCNEKRSIRITDIAKGLENVRIPLVDETCNEDLPK-FTYIPQNVIYQSAY 487
           + A     P   +    I   DIA+G E + IP V+   +E  P  + Y+ QN +     
Sbjct: 13  SKALQDSAPDRPSPVERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMN 72

Query: 488 VHISLARISDEDCCSNCSGDCLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKG 547
           +  ++  +    C  +CS         C C + +     Y + G L  EF          
Sbjct: 73  IDRNITHLQYCVCIDDCSSS------NCMCGQLSM-RCWYDKDGRLLPEF---------- 115

Query: 548 PCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCK 607
                                             I EC   C C   C+NR+VQ G+  +
Sbjct: 116 ---------------------------NMAEPPLIFECNHACSCWRNCRNRVVQNGLRAR 148

Query: 608 LQVRMT 613
           LQ+  T
Sbjct: 149 LQLYRT 154

PyMOL of 3hna

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		613
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	99.93
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	99.88
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	99.87
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	99.83
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	99.8
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	98.69
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	98.49
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	98.18
2pb7_A		239	E3 ubiquitin-protein ligase UHRF1; beta barrel, NE	92.57
3q0b_X		167	Histone-lysine N-methyltransferase, H3 lysine-9 S	92.57
3fde_A		212	E3 ubiquitin-protein ligase UHRF1; SRA domain, bas	92.54
3oln_A		231	E3 ubiquitin-protein ligase UHRF2; DNA-binding, me	89.16

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

Probab=99.93  E-value=2.2e-26  Score=233.40  Aligned_cols=126  Identities=32%  Similarity=0.584  Sum_probs=105.0

Q ss_pred             cceeeccccCCCCCCceEEEeCCCCCC-CCCceEeeccccCCCcccccccccccCCCCCcCCCCCCCCCCCCcccccccC
Q 043203          444 RSIRITDIAKGLENVRIPLVDETCNED-LPKFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGDCLSLSIPCACTRETG  522 (613)
Q Consensus       444 r~~~~~DISkG~E~vPIpvVNeVDde~-PP~F~YI~~ni~~q~a~vnisla~i~~~~gC~dC~g~Cls~s~~CaC~~~ng  522 (613)
                      ..+...|||+|+|++||++||+||++. |+.|+||+++++.++..+.   ..+.+..|| +|.++|.+.  .|.|.+++ 
T Consensus        28 ~~~~~~Dis~G~E~~pi~~~N~vD~~~~p~~f~Y~~~~~~~~~~~~~---~~~~~~~gC-~C~~~C~~~--~C~C~~~~-  100 (287)
T 3hna_A           28 ERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNID---RNITHLQYC-VCIDDCSSS--NCMCGQLS-  100 (287)
T ss_dssp             CEEEESCTTTTCSSSCCCEEESSSSCCCCCSSEECSSCEESSCCCCC---CBGGGCCCC-CCSSSSCST--TCHHHHHT-
T ss_pred             CCEEhHhhCCCCCCCCEEEEeCCCCCCCCCCcEEccccccCCCcccc---ccCCCCCCC-cCcCCCCCC--CCcCcccC-
Confidence            444599999999999999999999987 6699999999877654332   134456799 999999974  79999988 


Q ss_pred             CccccCCCCcchHHHHHhhhhccCCCCccccccccCCCccccCCCCCCccccCCccccceeecCCCCCCCCCCCCceeee
Q 043203          523 GEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQ  602 (613)
Q Consensus       523 g~faYt~~GlL~~~fl~~ciS~~r~P~~~~~~yc~~cpler~kn~~~~epckGhL~r~~IyECn~~CgC~~~C~NRVVQr  602 (613)
                      ++++|+.+|+|..+|..                                     ..+++|||||+.|+|+.+|.|||+|+
T Consensus       101 ~~~~y~~~g~l~~~~~~-------------------------------------~~~~~i~EC~~~C~C~~~C~Nr~~q~  143 (287)
T 3hna_A          101 MRCWYDKDGRLLPEFNM-------------------------------------AEPPLIFECNHACSCWRNCRNRVVQN  143 (287)
T ss_dssp             SSCCBCTTSCBCTTCCS-------------------------------------SSCCCEECCCTTSSSCTTCSSCSGGG
T ss_pred             cccccCCCCcccccccc-------------------------------------cCCceEEecCCCCCCCCCCCCcccCc
Confidence            46899999999753210                                     02478999999999999999999999


Q ss_pred             CCeeeEEEeeC
Q 043203          603 GITCKLQVRMT  613 (613)
Q Consensus       603 GIk~~LEVFkT  613 (613)
                      |++.+|+||+|
T Consensus       144 g~~~~l~v~~t  154 (287)
T 3hna_A          144 GLRARLQLYRT  154 (287)
T ss_dssp             CCCSCEEEEEC
T ss_pred             CCcccEEEEEc
Confidence            99999999997

PyMOL of 3hna

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12	Back alignment and structure

>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*	Back alignment and structure

>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A*	Back alignment and structure

>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		613
d1ml9a_		284	b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T	9e-18
d1mvha_		269	b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S	1e-13

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

 Score = 81.9 bits (201), Expect = 9e-18
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 27/158 (17%)

Query: 457 NVRIPLVDETCNEDLPK-FTYIPQNVIYQSAYVHISLARISDEDCCSNCSGDCLSLSIPC 515
            + I +V+   +  L   F +I  ++I ++  V     R+     C +C+ D   +   C
Sbjct: 1   QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRV----GC-SCASDEECMYSTC 55

Query: 516 ACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKG 575
            C  E   +         +++  +      K       V     PI              
Sbjct: 56  QCLDEMAPDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPI-------------- 101

Query: 576 HIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613
                   EC + C CS  C NR+V++G T  LQ+  T
Sbjct: 102 -------YECHQGCACSKDCPNRVVERGRTVPLQIFRT 132

PyMOL of d1ml9a_

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		613
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	99.84
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	99.83
d2zkda1		209	E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musc	91.17

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=99.84  E-value=1.3e-21  Score=194.23  Aligned_cols=131  Identities=24%  Similarity=0.400  Sum_probs=83.4

Q ss_pred             CCceEEEeCCCCCC-CCCceEeeccccCCCcccccccccccCCCCCcCCCCCCCCCCCCcccccccCCccccCCCCcchH
Q 043203          457 NVRIPLVDETCNED-LPKFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGDCLSLSIPCACTRETGGEFAYTQQGLLKE  535 (613)
Q Consensus       457 ~vPIpvVNeVDde~-PP~F~YI~~ni~~q~a~vnisla~i~~~~gC~dC~g~Cls~s~~CaC~~~ngg~faYt~~GlL~~  535 (613)
                      ++||++||+||++. ||.|+||+++++.++.++.    +..+..|| +|.++|.-.+.+|+|+++++..+.....+....
T Consensus         1 ~~pi~~~N~vd~~~~p~~f~Yi~~~~~~~~~~~~----~~~~~~gC-~C~~~~~c~~~~C~C~~~~~~~~~~~~~~~~~~   75 (284)
T d1ml9a_           1 QLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVA----DQSFRVGC-SCASDEECMYSTCQCLDEMAPDSDEEADPYTRK   75 (284)
T ss_dssp             CCCEEEECSSSSCCCCTTCEECSSCEECTTCCCC----CGGGCCCC-CCSSTTGGGSTTSGGGTTSCCC-----------
T ss_pred             CCCEEEEeCCCCCCCCCCCEECccEEeCCCCccC----CccCCCCC-CCcCCCCcCCCCCcChhhcCccccccccccccc
Confidence            58999999999987 5689999999987765442    34556799 998765422248999998765432221111100


Q ss_pred             HHHHhhhhccCCCCccccccccCCCccccCCCCCCccccCCccccceeecCCCCCCCCCCCCceeeeCCeeeEEEeeC
Q 043203          536 EFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT  613 (613)
Q Consensus       536 ~fl~~ciS~~r~P~~~~~~yc~~cpler~kn~~~~epckGhL~r~~IyECn~~CgC~~~C~NRVVQrGIk~~LEVFkT  613 (613)
                                    ....+++........+.       .......+|||||+.|+|+..|.|||||+|++.+||||+|
T Consensus        76 --------------~~~~~~~~~~~~~~~~~-------~~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~lev~kt  132 (284)
T d1ml9a_          76 --------------KRFAYYSQGAKKGLLRD-------RVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRT  132 (284)
T ss_dssp             --------------CCSSBBCSSTTBTSBCH-------HHHHHCCCEECCCTTCSSCTTCTTCHHHHCCCSCEEEEEC
T ss_pred             --------------ccccccccccccccccc-------ccccCCCceeCCCCCCCcCCCCCCeeccCCCccCEEEEEc
Confidence                          00001111100000000       0001246799999999999999999999999999999998

PyMOL of d1ml9a_

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure