Citrus Sinensis ID: 043224

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
MEDYGNSDDEHQYLDDDEVDIDDNGYGFEAPATENMARASASSMVIPKESLLAAQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGVTVVENDHQVPLSQCSSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIADKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYSNGYIEVSEERPEHGKWRLESYYHCHKLYKAHTESFRLEYEMKEDIQDKIKILGEKDTSSKDFGWIKDGLNKLFRARRILSFSYPFAFYMFADDLLKNEMTREERKIKQNFFEDQQQQFETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPFNSAAVEKASKIPYC
cccccccccccccccccccccccccccccccccHHHHHccccccEEcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEcccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
cccccccccHHccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccccccccccccccccccEccEEEcccccHccccccccccHHHHHHHHHHHHHHccccccEEEcccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccEEcccccccccEEEEccccccEEEEEcccEEEEcccccccccccHHHHHHHHHHcccccccHHHHHHcccccccccccEEccccccEEEEEcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHccccc
medygnsddehqyldddevdiddngygfeapatenmarasassmvipkESLLAAQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGVTvvendhqvplsqcsstfccniccddvspqevttmdcghcfcnncwteHFIVKINDGQSRRIKCMALkcnvvcdeaKIRCLVsardsniaDKFERFLLESyiddnrrvkwcpsvphcgnAIQVEADELCevecacgfqfcfscssvahspcsclmWELWSKKFEVESLSLNWisshtkpcpkcckpieknggcnmvrckcgitfnwisgleysngyievseerpehgkwrleSYYHCHKLYKAHTESFRLEYEMKEDIQDKIKIlgekdtsskdfgwIKDGLNKLFRARRILSFSYPFAFYMFADDLLKNEMTREERKIKQNFFEDQQQQFETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLgslkhsvhkiapfnsaavekaskipyc
medygnsddehqyldddevDIDDNGYGFEAPATENMARASASSMVIPKESLLAAQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGVTVVENDHQVPLSQCSSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRClvsardsniadkFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYSNGYIEVSEERPEHGKWRLESYYHCHKLYKAHTESFRLEYEMKEDIQDKIKIlgekdtsskdfgWIKDGLNKLFRARRILSFSYPFAFYMFADDLLKNEMTREERKIKQNFFEDQQQQFETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPfnsaavekaskipyc
MEDYGNSDDEHQYLDDDEVDIDDNGYGFEAPATENMARASASSMVIPKESLLAAQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGVTVVENDHQVPLSQCSSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIADKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTkpcpkcckpIEKNGGCNMVRCKCGITFNWISGLEYSNGYIEVSEERPEHGKWRLESYYHCHKLYKAHTESFRLEYEMKEDIQDKIKILGEKDTSSKDFGWIKDGLNKLFRARRILSFSYPFAFYMFADDLLKNEMTREERKIKqnffedqqqqfeTNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPFNSAAVEKASKIPYC
*************************************************SLLAAQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGVTVVENDHQVPLSQCSSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIADKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYSNGYIEVSEERPEHGKWRLESYYHCHKLYKAHTESFRLEYEMKEDIQDKIKILGEKDTSSKDFGWIKDGLNKLFRARRILSFSYPFAFYMFADDLLKNE***********FF*****QFETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPFN*************
****GNSDDEHQYLDDDEVDIDDNGYG**************SSMVIPKESLLAAQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGVTV************SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIADKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYSNGYIEVSEERPEHGKWRLESYYHCHKLYKAHTESFRLEYEMKED****************DFGWIKDGLNKLFRARRILSFSYPFAFYMFADDLLKNEMTREERKIKQNFFEDQQQQFETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLGS*************************
*********EHQYLDDDEVDIDDNGYGFEAPATENMARASASSMVIPKESLLAAQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGVTVVENDHQVPLSQCSSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIADKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYSNGYIEVSEERPEHGKWRLESYYHCHKLYKAHTESFRLEYEMKEDIQDKIKILGEKDTSSKDFGWIKDGLNKLFRARRILSFSYPFAFYMFADDLLKNEMTREERKIKQNFFEDQQQQFETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPFNSAAVEKASKIPYC
*************************************RASASSMVIPKESLLAAQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGVTVVEND********SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIADKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYSNGYIEVSEERPEHGKWRLESYYHCHKLYKAHTESFRLEYEMKEDIQDKIKILGEKDTSSKDFGWIKDGLNKLFRARRILSFSYPFAFYMFADDLLKNEMTREERKIKQNFFEDQQQQFETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPFNSAAVEKASKIPYC
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MEDYGNSDDEHQYLDDDEVDIDDNGYGFEAPATENMARASASSMVIPKESLLAAQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGVTVVENDHQVPLSQCSSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIADKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYSNGYIEVSEERPEHGKWRLESYYHCHKLYKAHTESFRLEYEMKEDIQDKIKILGEKDTSSKDFGWIKDGLNKLFRARRILSFSYPFAFYMFADDLLKNEMTREERKIKQNFFEDQQQQFETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPFNSAAVEKASKIPYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query516 2.2.26 [Sep-21-2011]
Q949V6597 Probable E3 ubiquitin-pro yes no 0.990 0.855 0.524 1e-163
Q84RR2593 Probable E3 ubiquitin-pro no no 0.986 0.858 0.542 1e-162
Q9LVW9529 Putative E3 ubiquitin-pro no no 0.951 0.928 0.466 1e-131
Q9LVX0537 Probable E3 ubiquitin-pro no no 0.936 0.899 0.465 1e-129
Q84RR0562 Probable E3 ubiquitin-pro no no 0.905 0.830 0.302 1e-50
Q9SKC4514 Probable E3 ubiquitin-pro no no 0.889 0.892 0.290 6e-50
Q8L829552 Probable E3 ubiquitin-pro no no 0.866 0.809 0.285 5e-49
Q6NW85533 E3 ubiquitin-protein liga yes no 0.819 0.793 0.288 2e-48
Q6PFJ9527 E3 ubiquitin-protein liga no no 0.819 0.802 0.283 4e-48
Q6T486520 Probable E3 ubiquitin-pro no no 0.844 0.838 0.285 4e-48
>sp|Q949V6|ARI1_ARATH Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana GN=ARI1 PE=2 SV=1 Back     alignment and function desciption
 Score =  573 bits (1478), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/526 (52%), Positives = 375/526 (71%), Gaps = 15/526 (2%)

Query: 1   MEDYGNSDDEHQYLDDDEVDIDDNGYGFEAPATENMARASASSMVIPKESLLAAQMGDLL 60
           M+DY ++++E  Y   D+  +D  G   E    + ++   +++ VI +ESLLAAQ  DLL
Sbjct: 1   MDDYFSAEEEACYYSSDQDSLD--GIDNEESELQPLSSKRSNTQVITQESLLAAQREDLL 58

Query: 61  RVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGVTVVENDHQVPLSQCS 120
           RVM+LLS+KE HARTLLIHY+WDVEK+FAV VE+GKD LF+ AGVTV +  +       S
Sbjct: 59  RVMELLSIKEHHARTLLIHYQWDVEKLFAVFVEKGKDSLFSGAGVTVFDYQYGNSSFPQS 118

Query: 121 STFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDE 180
           S   C++C +D+    +T MDCGHCFCNNCWTEHF V+IN+GQS+RI+CMA +CN +CDE
Sbjct: 119 SQMSCDVCMEDLPGDHMTRMDCGHCFCNNCWTEHFTVQINEGQSKRIRCMAHQCNAICDE 178

Query: 181 AKIRCLVSARDSNIADKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELCEVECAC 240
             +R LVS +  ++A KF+R+LLESYI+DNR VKWCPS PHCGNAI+ E D+LCEVEC+C
Sbjct: 179 DIVRSLVSKKRPDLAAKFDRYLLESYIEDNRMVKWCPSTPHCGNAIRAEDDKLCEVECSC 238

Query: 241 GFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKNGGCNM 300
           G QFCFSC   AHSPCSCLMWELW KK   ES ++NWI+ HTK CPKC KP+EKNGGCN+
Sbjct: 239 GLQFCFSCLCQAHSPCSCLMWELWRKKCRDESETINWITVHTKLCPKCYKPVEKNGGCNL 298

Query: 301 VRCKCGITFNWISG------------LEYSNG-YIEVSEERPEHGKWRLESYYHCHKLYK 347
           VRC CG  F W+ G              +S G Y +  E++ E  K  L  Y H H  YK
Sbjct: 299 VRCICGQCFCWLCGGATGSDHTYRSIAGHSCGRYQDDKEKQMERAKRDLNRYTHYHHRYK 358

Query: 348 AHTESFRLEYEMKEDIQDKIKILGEKDTSSKDFGWIKDGLNKLFRARRILSFSYPFAFYM 407
           AHT+S +LE ++++ I +K+    +++   KDF W+ +GL++LFR+RR+LS+SY FA+YM
Sbjct: 359 AHTDSSKLEDKLRDTIHEKVSKSEKRELKLKDFSWVTNGLDRLFRSRRVLSYSYAFAYYM 418

Query: 408 FADDLLKNEMTREERKIKQNFFEDQQQQFETNIERLSLILEENFEKYSEHQLKDFRMRVI 467
           F +++ K+EMT EER+IK+N FEDQQQQ E+N+E+LS  LEE F+++S  ++   R+++I
Sbjct: 419 FGEEMFKDEMTPEEREIKKNLFEDQQQQLESNVEKLSQFLEEPFDEFSNDKVMAIRIQII 478

Query: 468 TQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPFNSAAVEKASKI 513
             SV  D LC+ +YE IE DLLGSL+  +H I+P+ S  +E+A++ 
Sbjct: 479 NLSVAVDTLCKKMYECIENDLLGSLQLGIHNISPYRSKGIEQAAQF 524
Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q84RR2|ARI2_ARATH Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVW9|ARI4_ARATH Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana GN=ARI4 PE=5 SV=2 Back     alignment and function description
>sp|Q9LVX0|ARI3_ARATH Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana GN=ARI3 PE=2 SV=1 Back     alignment and function description
>sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKC4|ARI10_ARATH Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana GN=ARI10 PE=2 SV=1 Back     alignment and function description
>sp|Q8L829|ARI5_ARATH Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana GN=ARI5 PE=2 SV=1 Back     alignment and function description
>sp|Q6NW85|ARI1L_DANRE E3 ubiquitin-protein ligase arih1l OS=Danio rerio GN=arih1l PE=2 SV=1 Back     alignment and function description
>sp|Q6PFJ9|ARI1_DANRE E3 ubiquitin-protein ligase arih1 OS=Danio rerio GN=arih1 PE=2 SV=1 Back     alignment and function description
>sp|Q6T486|RBRA_DICDI Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium discoideum GN=rbrA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
224103473591 predicted protein [Populus trichocarpa] 0.982 0.857 0.581 1e-176
225428572589 PREDICTED: probable E3 ubiquitin-protein 0.988 0.865 0.581 1e-176
302142421555 unnamed protein product [Vitis vinifera] 0.922 0.857 0.617 1e-175
449455196589 PREDICTED: probable E3 ubiquitin-protein 0.986 0.864 0.577 1e-175
225458418564 PREDICTED: probable E3 ubiquitin-protein 0.922 0.843 0.617 1e-174
356545317580 PREDICTED: probable E3 ubiquitin-protein 0.982 0.874 0.546 1e-169
356538827580 PREDICTED: probable E3 ubiquitin-protein 0.976 0.868 0.540 1e-165
356538831595 PREDICTED: probable E3 ubiquitin-protein 0.976 0.847 0.540 1e-165
255556141592 Protein ariadne-1, putative [Ricinus com 0.994 0.866 0.577 1e-165
359475257573 PREDICTED: probable E3 ubiquitin-protein 0.957 0.862 0.558 1e-164
>gi|224103473|ref|XP_002313070.1| predicted protein [Populus trichocarpa] gi|222849478|gb|EEE87025.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 311/535 (58%), Positives = 389/535 (72%), Gaps = 28/535 (5%)

Query: 2   EDYGNSDDEHQYLDDDE------VDIDDNGYGFEAPATENMARASASSMVIPKESLLAAQ 55
           EDYG S++E  Y  DD        D DD+   +  P         +++ VI KESLLAAQ
Sbjct: 5   EDYGFSEEEDYYYADDGDSHDGLADNDDSALQWAPPK-------GSTTKVITKESLLAAQ 57

Query: 56  MGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGVTVVEN-DHQV 114
             DL RVMDLLSLKE HARTLLIHYRWDVEK+ AVLVE+GK  LF +AGVTVVEN D +V
Sbjct: 58  REDLRRVMDLLSLKEHHARTLLIHYRWDVEKLLAVLVEKGKSCLFTEAGVTVVENVDDEV 117

Query: 115 PLSQCSSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKC 174
           P S  SST  C+IC +D +    T M+CGHCFCNNCWTEHFI+KIN+GQSRRI+CMA +C
Sbjct: 118 PPSS-SSTITCDICIEDATADNATRMECGHCFCNNCWTEHFIIKINEGQSRRIQCMAHRC 176

Query: 175 NVVCDEAKIRCLVSARDSNIADKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELC 234
           + +CDEA +R LVS R  N+A+KF+RFLLESYI+DN+ VKWCPS+PHCG AI+VE DE C
Sbjct: 177 SAICDEAIVRNLVSRRHPNLAEKFDRFLLESYIEDNKMVKWCPSIPHCGKAIRVEEDEFC 236

Query: 235 EVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEK 294
           EVEC+CG QFCFSC S AHSPCSCLMWE WSKK   ES ++NWI+ HTKPCPKC KP+EK
Sbjct: 237 EVECSCGLQFCFSCLSEAHSPCSCLMWERWSKKCHDESETVNWITVHTKPCPKCYKPVEK 296

Query: 295 NGGCNMVRCKCGITFNWISG------------LEYSNG-YIEVSEERPEHGKWRLESYYH 341
           NGGCN+V C CG +F W+ G              +S G Y E  E++ E  K  L  Y H
Sbjct: 297 NGGCNLVSCICGQSFCWVCGGATGRDHTWSRIAGHSCGRYKEDREKQTERAKRDLYRYMH 356

Query: 342 CHKLYKAHTESFRLEYEMKEDIQDKIKILGEKDTSSKDFGWIKDGLNKLFRARRILSFSY 401
            H  +KAHT+SF+LE ++KE I DK+ +  E++   KDF W+ +GLN+LFR+RR+LS+SY
Sbjct: 357 YHNRFKAHTDSFKLESKLKESILDKVSVAEERELRLKDFSWVTNGLNRLFRSRRVLSYSY 416

Query: 402 PFAFYMFADDLLKNEMTREERKIKQNFFEDQQQQFETNIERLSLILEENFEKYSEHQLKD 461
           PFAFYMF ++  K+EMT EER+IK+N FEDQQQQ E+N+E+LS+ LEE F+++S+ ++ D
Sbjct: 417 PFAFYMFGEEFFKDEMTDEEREIKKNLFEDQQQQLESNVEKLSMFLEEPFQQFSQDKVMD 476

Query: 462 FRMRVITQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPFNSAAVEKASKIPYC 516
            RMRVI  SVT D LC+ +YE IE+DLLGSL    H IAP+ S  +E+AS++  C
Sbjct: 477 IRMRVINLSVTIDTLCQKMYECIESDLLGSLHLGTHHIAPYKSKGIERASELSSC 531

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225428572|ref|XP_002284665.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1 isoform 1 [Vitis vinifera] gi|297741410|emb|CBI32541.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142421|emb|CBI19624.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449455196|ref|XP_004145339.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Cucumis sativus] gi|449471519|ref|XP_004153333.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Cucumis sativus] gi|449502370|ref|XP_004161621.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225458418|ref|XP_002283665.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356545317|ref|XP_003541090.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Glycine max] Back     alignment and taxonomy information
>gi|356538827|ref|XP_003537902.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356538831|ref|XP_003537904.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|255556141|ref|XP_002519105.1| Protein ariadne-1, putative [Ricinus communis] gi|223541768|gb|EEF43316.1| Protein ariadne-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359475257|ref|XP_003631625.1| PREDICTED: probable E3 ubiquitin-protein ligase ARI1 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
TAIR|locus:2052920593 ARI2 "ARIADNE 2" [Arabidopsis 0.986 0.858 0.516 2.6e-143
TAIR|locus:2116184597 ARI1 "ARIADNE 1" [Arabidopsis 0.988 0.854 0.495 3.7e-142
TAIR|locus:2089104537 ARI3 "ARIADNE 3" [Arabidopsis 0.976 0.938 0.402 1.7e-100
DICTYBASE|DDB_G0286961520 rbrA "IBR zinc finger-containi 0.629 0.625 0.301 4.5e-51
DICTYBASE|DDB_G0278981563 DDB_G0278981 "ariadne-2-like p 0.753 0.690 0.275 1.4e-50
UNIPROTKB|A2VEA3555 ARIH1 "E3 ubiquitin-protein li 0.837 0.778 0.263 4.7e-48
UNIPROTKB|F1PG97554 ARIH1 "Uncharacterized protein 0.835 0.777 0.265 9.8e-48
TAIR|locus:2065954562 ARI7 "ARIADNE 7" [Arabidopsis 0.571 0.524 0.347 3.3e-47
TAIR|locus:2045223514 ARI10 "ARIADNE 10" [Arabidopsi 0.777 0.780 0.292 3.3e-47
MGI|MGI:1344363555 Arih1 "ariadne ubiquitin-conju 0.837 0.778 0.263 4.2e-47
TAIR|locus:2052920 ARI2 "ARIADNE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1401 (498.2 bits), Expect = 2.6e-143, P = 2.6e-143
 Identities = 271/525 (51%), Positives = 355/525 (67%)

Query:     1 MEDYGNSDDEHQYLDDDEVDIDDNGYGFEAPATENMARASASSMVIPKESLLAAQMGDLL 60
             M+D  + ++E  Y   D+  +  NG   +   +  ++  S +  VI KESLLAAQ  DL 
Sbjct:     1 MDDNLSGEEEDYYYSSDQESL--NGIDNDESVSIPVSSRSNTVKVITKESLLAAQREDLR 58

Query:    61 RVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGVTVVENDH-QVPLSQC 119
             RVM+LLS+KE HARTLLIHYRWDVEK+FAVLVE+GKD LF+ AGVT++EN      +S  
Sbjct:    59 RVMELLSVKEHHARTLLIHYRWDVEKLFAVLVEKGKDSLFSGAGVTLLENQSCDSSVSGS 118

Query:   120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179
             SS   C+IC +DV   ++T MDCGH FCNNCWT HF VKIN+GQS+RI CMA KCN +CD
Sbjct:   119 SSMMSCDICVEDVPGYQLTRMDCGHSFCNNCWTGHFTVKINEGQSKRIICMAHKCNAICD 178

Query:   180 EAKIRCLVSARDSNIADKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELCEVECA 239
             E  +R LVS    ++A+KF+RFLLESYI+DN+ VKWCPS PHCGNAI+VE DELCEVEC+
Sbjct:   179 EDVVRALVSKSQPDLAEKFDRFLLESYIEDNKMVKWCPSTPHCGNAIRVEDDELCEVECS 238

Query:   240 CGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTXXXXXXXXXIEKNGGCN 299
             CG QFCFSCSS AHSPCSC+MWELW KK   ES ++NWI+ HT         +EKNGGCN
Sbjct:   239 CGLQFCFSCSSQAHSPCSCVMWELWRKKCFDESETVNWITVHTKPCPKCHKPVEKNGGCN 298

Query:   300 MVRCKCGITFNWISGLE------------YSNG-YIEVSEERPEHGKWRLESYYHCHKLY 346
             +V C C  +F W+ G              +S G + E  E++ E  K  L+ Y H H  Y
Sbjct:   299 LVTCLCRQSFCWLCGEATGRDHTWARISGHSCGRFQEDKEKQMERAKRDLKRYMHYHNRY 358

Query:   347 KAHTESFRLEYEMKEDIQDKIKILGEKDTSSKDFGWIKDGLNKLFRARRILSFSYPFAFY 406
             KAH +S +LE ++  +I  K+ I  +++   KDF W  +GL++LFR+RR+LS+SYPFAFY
Sbjct:   359 KAHIDSSKLEAKLSNNISKKVSISEKRELQLKDFSWATNGLHRLFRSRRVLSYSYPFAFY 418

Query:   407 MFADDLLKNEMTREERKIKXXXXXXXXXXXXTNIERLSLILEENFEKYSEHQLKDFRMRV 466
             MF D+L K+EM+ EER+IK             N+E+LS  LEE F+++++ ++   R++V
Sbjct:   419 MFGDELFKDEMSSEEREIKQNLFEDQQQQLEANVEKLSKFLEEPFDQFADDKVMQIRIQV 478

Query:   467 ITQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPFNSAAVEKAS 511
             I  SV  D LC N+YE IE DLLGSL+  +H I P+ S  +E+AS
Sbjct:   479 INLSVAVDTLCENMYECIENDLLGSLQLGIHNITPYRSNGIERAS 523
GO:0005737 "cytoplasm" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2116184 ARI1 "ARIADNE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089104 ARI3 "ARIADNE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286961 rbrA "IBR zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278981 DDB_G0278981 "ariadne-2-like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|A2VEA3 ARIH1 "E3 ubiquitin-protein ligase ARIH1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PG97 ARIH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TAIR|locus:2065954 ARI7 "ARIADNE 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045223 ARI10 "ARIADNE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1344363 Arih1 "ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q949V6ARI1_ARATH6, ., 3, ., 2, ., -0.52470.99030.8559yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IX0532
hypothetical protein (592 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
smart0064764 smart00647, IBR, In Between Ring fingers 2e-14
pfam0148563 pfam01485, IBR, IBR domain 5e-11
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 6e-04
>gnl|CDD|214763 smart00647, IBR, In Between Ring fingers Back     alignment and domain information 
 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 3/65 (4%)

Query: 196 DKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELC-EVEC-ACGFQFCFSCSSVAH 253
           +K+ER LLESY++ N  +KWCP+ P C  AI V  +E C  V C  CGF FCF C    H
Sbjct: 1   EKYERLLLESYVESNPDLKWCPA-PDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWH 59

Query: 254 SPCSC 258
           SP SC
Sbjct: 60  SPVSC 64

the domains occurs between pairs og RING fingers. Length = 64
>gnl|CDD|216524 pfam01485, IBR, IBR domain Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 516
KOG1815444 consensus Predicted E3 ubiquitin ligase [Posttrans 100.0
KOG1812384 consensus Predicted E3 ubiquitin ligase [Posttrans 100.0
KOG1814445 consensus Predicted E3 ubiquitin ligase [Posttrans 100.0
KOG0006446 consensus E3 ubiquitin-protein ligase (Parkin prot 99.93
smart0064764 IBR In Between Ring fingers. the domains occurs be 99.38
PF0148564 IBR: IBR domain; InterPro: IPR002867 Zinc finger ( 99.26
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 98.3
smart0064764 IBR In Between Ring fingers. the domains occurs be 98.18
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 98.12
PF0148564 IBR: IBR domain; InterPro: IPR002867 Zinc finger ( 98.1
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.07
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.01
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 97.93
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 97.81
cd0016245 RING RING-finger (Really Interesting New Gene) dom 97.77
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 97.72
PF1463444 zf-RING_5: zinc-RING finger domain 97.69
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 97.66
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.48
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 97.4
PHA02926242 zinc finger-like protein; Provisional 97.38
PHA02929238 N1R/p28-like protein; Provisional 97.26
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.18
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.04
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 96.97
KOG2177386 consensus Predicted E3 ubiquitin ligase [Posttrans 96.85
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 96.83
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 96.52
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 96.35
KOG0287442 consensus Postreplication repair protein RAD18 [Re 96.34
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 96.13
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 96.07
KOG1814445 consensus Predicted E3 ubiquitin ligase [Posttrans 96.06
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 95.96
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 95.72
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 95.54
KOG1812384 consensus Predicted E3 ubiquitin ligase [Posttrans 95.18
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 95.13
KOG1002791 consensus Nucleotide excision repair protein RAD16 95.06
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 95.01
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 94.69
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 94.64
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 94.58
PF1057126 UPF0547: Uncharacterised protein family UPF0547; I 93.83
KOG4367 699 consensus Predicted Zn-finger protein [Function un 93.7
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 93.68
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 93.15
KOG2660331 consensus Locus-specific chromosome binding protei 92.46
KOG4185296 consensus Predicted E3 ubiquitin ligase [Posttrans 92.44
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 92.35
KOG0824324 consensus Predicted E3 ubiquitin ligase [Posttrans 92.23
KOG0006446 consensus E3 ubiquitin-protein ligase (Parkin prot 91.89
COG5432391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 91.77
KOG4159398 consensus Predicted E3 ubiquitin ligase [Posttrans 91.72
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 90.88
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 90.71
KOG14283738 consensus Inhibitor of type V adenylyl cyclases/Ne 90.33
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 90.24
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 89.81
COG5152259 Uncharacterized conserved protein, contains RING a 89.56
PRK00420112 hypothetical protein; Validated 88.61
PF05883134 Baculo_RING: Baculovirus U-box/Ring-like domain; I 88.28
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 88.09
KOG0802543 consensus E3 ubiquitin ligase [Posttranslational m 87.89
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 87.54
PHA0062659 hypothetical protein 87.52
KOG0311381 consensus Predicted E3 ubiquitin ligase [Posttrans 87.46
smart0066152 RPOL9 RNA polymerase subunit 9. 87.34
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 87.02
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 86.76
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 86.35
KOG1815444 consensus Predicted E3 ubiquitin ligase [Posttrans 86.03
PRK14559 645 putative protein serine/threonine phosphatase; Pro 85.91
PF1324023 zinc_ribbon_2: zinc-ribbon domain 85.79
PRK0043250 30S ribosomal protein S27ae; Validated 85.73
PF1495244 zf-tcix: Putative treble-clef, zinc-finger, Zn-bin 83.58
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 83.01
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 82.88
PF0929732 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do 82.68
PF1324826 zf-ribbon_3: zinc-ribbon domain 82.3
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 82.03
KOG4739233 consensus Uncharacterized protein involved in syna 82.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 81.08
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-74  Score=614.04  Aligned_cols=421  Identities=33%  Similarity=0.653  Sum_probs=380.2

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhhhChhHHHHHhCcccccCCCCCCCCCCCCcc
Q 043224           44 MVIPKESLLAAQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGVTVVENDHQVPLSQCSSTF  123 (516)
Q Consensus        44 ~vlt~~~i~~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~  123 (516)
                      .|+|.+++...|.++|.+|+++|.++..+|++||.||.|+.+++++.|+ .+++.++..+|+....        ......
T Consensus         1 ~vl~~~~~~~~~~~~i~~~~~~ls~~~~~~~~ll~~~~W~~~kl~~~~~-~~~~~~~~~~g~~~~~--------~~~~~~   71 (444)
T KOG1815|consen    1 EVLTPDDIAALMREDIIEVSDILSLSHAVARILLAHFCWNVEKLLEEWV-EDEETGCFFVGLLLWP--------KKKGDV   71 (444)
T ss_pred             CCCchHhhhHHhHhhHHHHHHhhcCCHHHHHHHHHhcCcchHHHHHHHH-hcCcchhhhccccccC--------CCCccc
Confidence            3789999999999999999999999999999999999999999999999 5678888888876543        123568


Q ss_pred             cccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHHHHHhhCCCChHHHHHHHHHHH
Q 043224          124 CCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIADKFERFLL  203 (516)
Q Consensus       124 ~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~e~~~~y~~~~~  203 (516)
                      .|.||++.++. .+..+.|||.||..||..||..+|.+|....|+||.++|...++.++|..+++.  ++...+|.++++
T Consensus        72 ~c~ic~~~~~~-~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~~~s~--~~~~~ky~~~i~  148 (444)
T KOG1815|consen   72 QCGICVESYDG-EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEKLVSD--KEDKEKYQRYIL  148 (444)
T ss_pred             cCCcccCCCcc-hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeeeecCC--HHHHHHHHHHHH
Confidence            99999999865 788889999999999999999999998755599999999999999999999983  368999999999


Q ss_pred             HHhhhcCCCcccCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcc
Q 043224          204 ESYIDDNRRVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTK  283 (516)
Q Consensus       204 ~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK  283 (516)
                      ++||+.+..++|||+ |+|++++.........|.|.||+.|||+|+.+||.|.+|..+..|+++..+++++.+||..|||
T Consensus       149 ~syve~~~~lkwCP~-~~C~~av~~~~~~~~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk  227 (444)
T KOG1815|consen  149 RSYVEDNVPLKWCPA-PGCGLAVKFGSLESVEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTK  227 (444)
T ss_pred             HHHHhcCCccccCCC-CCCCceeeccCCCccceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCc
Confidence            999999999999995 9999999975555667999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccceecCCCCceee-c--cccccccccccccc---------c-cccCCCCcc-hhhhhhhhhhhhhhHHHHHhh
Q 043224          284 PCPKCCKPIEKNGGCNMVRC-K--CGITFNWISGLEYS---------N-GYIEVSEER-PEHGKWRLESYYHCHKLYKAH  349 (516)
Q Consensus       284 ~CPkC~~~IEKn~GCnhMtC-~--C~~~FCw~C~~~w~---------C-~y~~~~~~~-~~~~~~~l~ry~hy~~r~~~h  349 (516)
                      +||+|.++|||++|||||+| .  |+++|||+|++.|.         | +|+...... ...++..|.||.|||+||++|
T Consensus       228 ~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~~~~~~~c~~~~~~~~~~~~~~a~~~l~r~~~~~~~~~~~  307 (444)
T KOG1815|consen  228 ECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHGSSTGYSCNRYVDGKSKSARSKARRSLKRYTHYYNRWMEH  307 (444)
T ss_pred             cCCCcccchhccCCccccccccCCcCCeeceeeecccccccccceeeeeeeechhhhhHHHHHHHHHHHHHHHHhhHHhh
Confidence            99999999999999999999 4  99999999999986         8 998766544 778888999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHH-HHHhh-ccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhhhhhcHHHHHHHHH
Q 043224          350 TESFRLEYEMKEDIQDK-IKILG-EKDTSSKDFGWIKDGLNKLFRARRILSFSYPFAFYMFADDLLKNEMTREERKIKQN  427 (516)
Q Consensus       350 ~~s~k~e~~l~~~~~~k-~~~~~-~~~~~~~~~~fl~~a~~~l~~~R~~L~~sY~~~yyl~~~~~~~~~~~~~~~~~~~~  427 (516)
                      +.|++++.++...++++ +..+. ...+++++++|+.+|+.+|++||+||+|||+||||+..             +++++
T Consensus       308 q~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~r~~l~~s~~~~~~~~~-------------~~~~~  374 (444)
T KOG1815|consen  308 QVSLKLEGKLLSKVEEVKKPKLSDSLSLSWIDVQFLRDAGDVLVECRRTLKWTYAYAYYLSE-------------NNKRN  374 (444)
T ss_pred             hhhhhhhhhhHHHHHHHhhhhhhcccCeeeeeeeeechhHHHHHhhhhhhhhhhhhhhhhcc-------------cchhh
Confidence            99999998877777543 33333 33467999999999999999999999999999999973             24568


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 043224          428 FFEDQQQQFETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLG  490 (516)
Q Consensus       428 lFe~~Q~~le~~~E~Ls~~le~~~~~~~~~~~~~~r~~~~~~t~~~~~~~~~l~~~~e~~l~~  490 (516)
                      +||++|.+||..+|+||..+++++...+.+++..+|+++.++|.++++++++++..+++||..
T Consensus       375 ~fe~~q~~~~~~~e~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  437 (444)
T KOG1815|consen  375 LFEDNQTDLESAVEPLSSCLEESLKDISSETLAEFKQKLTDLTSYVRNRFENLLKHLEEGLED  437 (444)
T ss_pred             hhHHHHHHHhhhhhhhHHHhccccccCCcccHHHHHhhccccchhhhhHHHHHHHHHHhcccc
Confidence            999999999999999999999987777778899999999999999999999999999999874

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00647 IBR In Between Ring fingers Back     alignment and domain information
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>smart00647 IBR In Between Ring fingers Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>PRK00420 hypothetical protein; Validated Back     alignment and domain information
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>PHA00626 hypothetical protein Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00661 RPOL9 RNA polymerase subunit 9 Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>PF13240 zinc_ribbon_2: zinc-ribbon domain Back     alignment and domain information
>PRK00432 30S ribosomal protein S27ae; Validated Back     alignment and domain information
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains Back     alignment and domain information
>PF13248 zf-ribbon_3: zinc-ribbon domain Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 3e-19
1wd2_A60 Ariadne-1 protein homolog; ring, IBR, triad, zinc 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
2ct7_A86 Ring finger protein 31; IBR, structural genomics, 3e-06
2jmo_A80 Parkin; IBR, E3 ligase, zinc binding domain, RBR; 2e-04
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 3e-04
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94 Back     alignment and structure
 Score = 81.8 bits (202), Expect = 3e-19
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 6/94 (6%)

Query: 120 SSTFCCNICCDDVSPQEVTTM-DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCN--V 176
           S +  C +C  +   +++TT+  C   FC  C  ++  + I +G    I C    C    
Sbjct: 3   SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62

Query: 177 VCDEAKIRCLVSARDSNIADKFERFLLESYIDDN 210
              E +I C+V+A    I  ++++   E     +
Sbjct: 63  HLQENEIECMVAA---EIMQRYKKLQFERSGPSS 93
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 60 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4 Length = 86 Back     alignment and structure
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens} Length = 80 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
1wd2_A60 Ariadne-1 protein homolog; ring, IBR, triad, zinc 99.75
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 99.65
2ct7_A86 Ring finger protein 31; IBR, structural genomics, 99.39
2jmo_A80 Parkin; IBR, E3 ligase, zinc binding domain, RBR; 99.18
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 99.03
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 98.56
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 98.31
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 98.29
2ecw_A85 Tripartite motif-containing protein 30; metal bind 98.26
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 98.21
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 98.18
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 98.16
2ecm_A55 Ring finger and CHY zinc finger domain- containing 98.16
2ysl_A73 Tripartite motif-containing protein 31; ring-type 98.16
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 98.14
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 98.13
2ysj_A63 Tripartite motif-containing protein 31; ring-type 98.12
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 98.09
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 98.08
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 98.04
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 98.02
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 98.02
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 98.02
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 98.01
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 98.01
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 98.01
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 98.01
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 98.01
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 97.99
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 97.99
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 97.96
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 97.95
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 97.94
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 97.94
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 97.93
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 97.93
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 97.9
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 97.82
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 97.77
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 97.77
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 97.76
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 97.76
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 97.75
2ect_A78 Ring finger protein 126; metal binding protein, st 97.75
1z6u_A150 NP95-like ring finger protein isoform B; structura 97.73
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 97.73
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 97.7
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 97.65
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 97.64
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 97.62
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 97.58
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 97.54
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 97.5
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 97.48
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 97.44
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 97.31
2ct7_A86 Ring finger protein 31; IBR, structural genomics, 97.31
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 97.27
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 97.16
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 97.1
2f42_A179 STIP1 homology and U-box containing protein 1; cha 97.09
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 97.01
2jmo_A80 Parkin; IBR, E3 ligase, zinc binding domain, RBR; 97.0
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 96.92
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 96.89
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 96.85
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 96.82
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 96.74
2ea5_A68 Cell growth regulator with ring finger domain prot 96.67
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 95.96
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 95.83
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 95.74
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 95.64
1v92_A46 NSFL1 cofactor P47; 3-helix bundle, recombination; 95.22
1wd2_A60 Ariadne-1 protein homolog; ring, IBR, triad, zinc 94.32
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 93.9
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 93.48
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 92.56
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 92.54
2di0_A71 Activating signal cointegrator 1 complex subunit 2 92.32
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 92.1
1wj7_A104 Hypothetical protein (RSGI RUH-015); UBA domain, u 91.8
2jun_A101 Midline-1; B-BOX, TRIM, ring finger, alternative s 91.32
2cs3_A93 Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s 91.1
3e21_A45 HFAF1, FAS-associated factor 1; UBA, alternative s 90.59
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 90.17
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 90.05
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 89.92
2dzl_A66 Protein FAM100B; UBA-like domain, structural genom 89.42
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 89.38
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 89.03
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 88.61
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 88.5
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 88.49
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 88.25
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 87.92
2ysl_A73 Tripartite motif-containing protein 31; ring-type 87.7
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 87.47
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 85.54
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 85.51
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 85.35
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 84.9
1z6u_A150 NP95-like ring finger protein isoform B; structura 84.32
2ecm_A55 Ring finger and CHY zinc finger domain- containing 84.28
2ecw_A85 Tripartite motif-containing protein 30; metal bind 83.96
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 83.91
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 83.52
2ysj_A63 Tripartite motif-containing protein 31; ring-type 83.3
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 82.72
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 82.52
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 82.43
1pft_A50 TFIIB, PFTFIIBN; N-terminal domain, transcription 82.37
3j20_Y50 30S ribosomal protein S27AE; archaea, archaeal, KI 82.25
2ect_A78 Ring finger protein 126; metal binding protein, st 82.2
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 82.16
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 82.1
2k4x_A55 30S ribosomal protein S27AE; metal-binding, ribonu 81.9
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 81.62
3nw0_A238 Non-structural maintenance of chromosomes element 81.41
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 81.41
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 81.26
1vq8_Z83 50S ribosomal protein L37AE; ribosome 50S, protein 80.65
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
Probab=99.75  E-value=1.4e-19  Score=138.14  Aligned_cols=42  Identities=45%  Similarity=1.085  Sum_probs=40.5

Q ss_pred             HHhcCcccCCCCCccceecCCCCceee-c--cccccccccccccc
Q 043224          277 WISSHTKPCPKCCKPIEKNGGCNMVRC-K--CGITFNWISGLEYS  318 (516)
Q Consensus       277 wi~~ntK~CPkC~~~IEKn~GCnhMtC-~--C~~~FCw~C~~~w~  318 (516)
                      ||.++||+||+|+++|||++|||||+| .  |+++|||+|+++|+
T Consensus         1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~   45 (60)
T 1wd2_A            1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE   45 (60)
T ss_dssp             CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred             CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence            788999999999999999999999999 4  99999999999997
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4 Back     alignment and structure
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4 Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens} Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Back     alignment and structure
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Back     alignment and structure
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3 Back     alignment and structure
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Back     alignment and structure
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8 Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 516
d1wima_94 g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016 1e-13
d2ct7a173 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (H 8e-10
d2ct7a173 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (H 4e-04
d1wd2a_60 g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Ho 1e-09
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 0.001
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 1e-13
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 120 SSTFCCNICCDDVSPQEVTTM-DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKC--NV 176
           S +  C +C  +   +++TT+  C   FC  C  ++  + I +G    I C    C    
Sbjct: 3   SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62

Query: 177 VCDEAKIRCLVSARDSNIADKFERFLLESYI 207
              E +I C+V    + I  ++++   E   
Sbjct: 63  HLQENEIECMV---AAEIMQRYKKLQFERSG 90
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
d1wd2a_60 Ariadne-1 protein homolog {Human (Homo sapiens) [T 99.76
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 99.61
d2ct7a173 Ring finger protein 31 {Human (Homo sapiens) [TaxI 99.26
d2ct7a173 Ring finger protein 31 {Human (Homo sapiens) [TaxI 98.94
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.24
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.15
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.08
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.04
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.03
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.02
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 97.95
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 97.93
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 97.91
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 97.79
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 97.71
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.63
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 97.61
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 96.95
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 96.71
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 96.21
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 96.12
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 94.57
d1wd2a_60 Ariadne-1 protein homolog {Human (Homo sapiens) [T 94.03
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 93.33
d2cs3a180 Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [ 93.2
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 92.55
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 92.45
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 88.29
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 87.57
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 87.22
d2di0a163 Activating signal cointegrator 1 complex subunit 2 86.98
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 86.86
d2c2la280 STIP1 homology and U box-containing protein 1, STU 86.24
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 83.41
d1wffa_85 ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus 82.35
d2k4xa155 Ribosomal protein S27ae {Thermoplasma acidophilum 81.57
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Ariadne-1 protein homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.9e-20  Score=139.25  Aligned_cols=42  Identities=45%  Similarity=1.100  Sum_probs=40.4

Q ss_pred             HHhcCcccCCCCCccceecCCCCceeec---cccccccccccccc
Q 043224          277 WISSHTKPCPKCCKPIEKNGGCNMVRCK---CGITFNWISGLEYS  318 (516)
Q Consensus       277 wi~~ntK~CPkC~~~IEKn~GCnhMtC~---C~~~FCw~C~~~w~  318 (516)
                      ||..|||+||+|+++|||++|||||+|+   ||++|||+|+++|.
T Consensus         1 wi~~ntK~CP~C~~~ieK~~GCnhM~C~~~~C~~~fCw~C~~~~~   45 (60)
T d1wd2a_           1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE   45 (60)
T ss_dssp             CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred             CchhcCcCCCCCCCeEEECCCCCCeEeCCCCCCCeEECCCCCccc
Confidence            7889999999999999999999999994   99999999999996
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure