Citrus Sinensis ID: 043251

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
MSTTTTLSEAYREHPLHPHHIIPIDFNSVCSLPESHKWPKFDDLYDNKISVPVIDLRDPRVAQLIGRACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPAGATGYGIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLDISEEQAEEMNWVGSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPTDSTVVPIVKSGQVARYRPVTVKEFISLKAKSPEKALSCIKT
ccccccHHHHHHccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHcccccccEEEEEccccccccccccEEEEEEEccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccEEEEEcccccccccccccccccccccccccEEEEcccccEEEEEccccEEEEccccccEEEEccccHHHHHcccccccccEEEEcccccEEEEEEEEccccccEEEEccccccccccccccHHHHHHHHHcccccccccccc
ccccccccHHHcccccccccccHHHHcccccccHHcccccccccccccccccEEEcccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEEEEcccccccHHHEEEEEEccHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccEEEEEccccccccccEccccccccccEEEEEEccccccEEEEEcccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEccccccEEcccccccccccccccHHHHHHHHHHHccccccHccc
MSTTTTLSEayrehplhphhiipidfnsvcslpeshkwpkfddlydnkisvpvidlrdpRVAQLIGRACEKWGVFQLiyhgiplnvlKDAESEARRLFSLPSRQKLkalrapagatgygiaritpffdkymwhegftIMGTSIHdhakqlwphnhakFCDVMETYQKKMNILADQLTQLIFKSLDISEEQAEEMNWvgsssalqlnsypscpepnravglaphtdtsLITILHENSIAGLQIFKQEVgwvsvkpvdgalvVNVGDLFhilsnarfpnvlhrVSVNQKRQRLSLAyfynpptdstvvpivksgqvaryrpvTVKEFISLKakspekalscikt
msttttlsEAYREHPLHPHHIIPIDFNSVCSLPESHKWPKFDDLYDNKISVPVIDLRDPRVAQLIGRACEKWGVFQLIYHGIPLNVLKDAESEARRLFslpsrqklkalrapagatgygIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLDISEEQAEEMNWVGSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHIlsnarfpnvlhRVSVNQKRQRLSLAYfynpptdstvvpivksgqvaryRPVTVKEfislkakspekalscikt
MSTTTTLSEAYREhplhphhiipiDFNSVCSLPESHKWPKFDDLYDNKISVPVIDLRDPRVAQLIGRACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPAGATGYGIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLDISEEQAEEMNWVGSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPTDSTVVPIVKSGQVARYRPVTVKEFISLKAKSPEKALSCIKT
***************LHPHHIIPIDFNSVCSLPESHKWPKFDDLYDNKISVPVIDLRDPRVAQLIGRACEKWGVFQLIYHGIPLNVLKDAE****RLFS******LKALRAPAGATGYGIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLDIS********W********************AVGLAPHTDTSLITILHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPTDSTVVPIVKSGQVARYRPVTVKEFISL**************
******************************SLPESHKWPKFDD*YDNKISVPVIDLRDPRVAQLIGRACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKL***RAPAGATGYGIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLDISEEQAEEMNWVGSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPTDSTVVPIVKSGQVARYRPVTVKEFISLKAKSPEKALSCI**
********EAYREHPLHPHHIIPIDFNSVCSLPESHKWPKFDDLYDNKISVPVIDLRDPRVAQLIGRACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPAGATGYGIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLDISEEQAEEMNWVGSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPTDSTVVPIVKSGQVARYRPVTVKEFISLK*************
******************HHIIPIDFNSVCSLPESHKWPKFDDLYDNKISVPVIDLRDPRVAQLIGRACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPAGATGYGIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLDISEEQAEEMNWVGSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPTDSTVVPIVKSGQVARYRPVTVKEFISLKAKSPE********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTTTTLSEAYREHPLHPHHIIPIDFNSVCSLPESHKWPKFDDLYDNKISVPVIDLRDPRVAQLIGRACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPAGATGYGIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLDISEEQAEEMNWVGSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPTDSTVVPIVKSGQVARYRPVTVKEFISLKAKSPEKALSCIKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query342 2.2.26 [Sep-21-2011]
Q39103358 Gibberellin 3-beta-dioxyg yes no 0.970 0.927 0.468 2e-88
Q9ZT84347 Gibberellin 3-beta-dioxyg no no 0.976 0.962 0.452 3e-80
Q9C971355 Gibberellin 3-beta-dioxyg no no 0.918 0.884 0.428 4e-77
Q9SVS8349 Gibberellin 3-beta-dioxyg no no 0.973 0.954 0.413 7e-77
Q3I409369 Gibberellin 3-beta-dioxyg N/A no 0.938 0.869 0.381 2e-67
Q3I411370 Gibberellin 3-beta-dioxyg N/A no 0.915 0.845 0.380 2e-63
Q3I410370 Gibberellin 3-beta-dioxyg N/A no 0.929 0.859 0.379 3e-63
Q39224358 Protein SRG1 OS=Arabidops no no 0.824 0.787 0.336 4e-43
Q9SQ80327 Gibberellin 2-beta-dioxyg N/A no 0.798 0.834 0.342 2e-39
O04706365 Gibberellin 20 oxidase 1- N/A no 0.801 0.750 0.324 2e-39
>sp|Q39103|G3OX1_ARATH Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2 Back     alignment and function desciption
 Score =  326 bits (835), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 166/354 (46%), Positives = 231/354 (65%), Gaps = 22/354 (6%)

Query: 7   LSEAYREHPLH-PHHIIPIDFNSVCSLPESHKWPKFDDLYDNKI--------SVPVIDLR 57
           L++ +R HP+H PH  IP DF S+  LP+S+KW   DDL  +          ++P+IDL 
Sbjct: 5   LTDVFRGHPIHLPHSHIP-DFTSLRELPDSYKWTPKDDLLFSAAPSPPATGENIPLIDLD 63

Query: 58  DPRVAQLIGRACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPAGATG 117
            P     IG AC  WG FQ+  HG+PL +L+D E     LF LP ++KLK+ R+  G +G
Sbjct: 64  HPDATNQIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETGVSG 123

Query: 118 YGIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLT 177
           YG+ARI  FF+K MW EGFTI G+ ++D  ++LWP +H  +CD++E Y++ M  LA +L 
Sbjct: 124 YGVARIASFFNKQMWSEGFTITGSPLNDF-RKLWPQHHLNYCDIVEEYEEHMKKLASKLM 182

Query: 178 QLIFKSLDISEEQAE------EMNWVGSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITI 231
            L   SL +SEE  E      ++NW  + +ALQLN YP CPEP+RA+GLA HTD++L+TI
Sbjct: 183 WLALNSLGVSEEDIEWASLSSDLNW--AQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTI 240

Query: 232 LHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRL 291
           L++N+ AGLQ+F+ ++GWV+V P  G+LVVNVGDLFHILSN  F +VLHR  VNQ R RL
Sbjct: 241 LYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARL 300

Query: 292 SLAYFYNPPTDSTVVPI---VKSGQVARYRPVTVKEFISLKAKSPEKALSCIKT 342
           S+A+ + P +D  + P+   V   +   Y+ VT KE++  KA    KALS I+ 
Sbjct: 301 SVAFLWGPQSDIKISPVPKLVSPVESPLYQSVTWKEYLRTKATHFNKALSMIRN 354
Converts the inactive gibbberellin precursors GA9 and GA20 in the bioactives gibberellins GA4 and GA1.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 5
>sp|Q9ZT84|G3OX2_ARATH Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2 Back     alignment and function description
>sp|Q9C971|G3OX4_ARATH Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVS8|G3OX3_ARATH Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1 Back     alignment and function description
>sp|Q3I409|G3O23_WHEAT Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q3I411|G3O21_WHEAT Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q3I410|G3O22_WHEAT Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQ80|G2OX1_PEA Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
224141841341 gibberellin 3-oxidase [Populus trichocar 0.976 0.979 0.614 1e-122
356507772341 PREDICTED: gibberellin 3-beta-dioxygenas 0.970 0.973 0.606 1e-115
356518262347 PREDICTED: gibberellin 3-beta-dioxygenas 0.973 0.959 0.588 1e-115
255549086345 gibberellin 3-beta hydroxylase, putative 0.973 0.965 0.593 1e-115
225430186355 PREDICTED: gibberellin 3-beta-dioxygenas 0.985 0.949 0.562 1e-113
384368295350 Gibberellin 3-oxidase [Cucurbita maxima] 0.979 0.957 0.58 1e-112
114329242349 gibberellin 3-oxidase [Pisum sativum] 0.976 0.957 0.568 1e-111
50428333344 gibberellin 3beta-hydroxylase3 [Daucus c 0.976 0.970 0.576 1e-110
357436835359 Gibberellin 3-beta-dioxygenase [Medicago 0.976 0.930 0.554 1e-109
304636275355 gibberellin 3-oxidase 3 [Marah macrocarp 0.982 0.946 0.556 1e-109
>gi|224141841|ref|XP_002324270.1| gibberellin 3-oxidase [Populus trichocarpa] gi|222865704|gb|EEF02835.1| gibberellin 3-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/342 (61%), Positives = 277/342 (80%), Gaps = 8/342 (2%)

Query: 5   TTLSEAYREHPLHPHHIIPIDFNSVCSLPESHKWPK---FDDLYDNKISVPVIDLRDPRV 61
           + LSEAYR+HPLH HHIIP+DF+SV ++P+SH WP    F+   D+++S+P +DL DP  
Sbjct: 2   SALSEAYRDHPLHLHHIIPLDFDSVRTVPDSHVWPTSHAFES--DDQLSIPTVDLMDPDA 59

Query: 62  AQLIGRACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPAGATGYGIA 121
            +L+G ACE WGVFQ+I HGIPL+++ + ESEARRLFSLP+  KLKALR+P GATGYG+A
Sbjct: 60  VKLVGHACETWGVFQVINHGIPLDIIDEVESEARRLFSLPTGHKLKALRSPGGATGYGLA 119

Query: 122 RITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIF 181
           RI+PFF K MWHEGFT+MG+ + DHA++LWP+++ +FCDVME YQKKM  LA  L  LI 
Sbjct: 120 RISPFFSKKMWHEGFTVMGSPV-DHARELWPNDYQRFCDVMEDYQKKMKELAITLMHLIL 178

Query: 182 KSLDISEEQ-AEEMNWVGSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGL 240
           KSLD+SEE+ ++ ++  G+S+ALQLNSYP CP+P+R +GLAPHTDTSL+TIL++++I GL
Sbjct: 179 KSLDLSEEEISKVVSPGGASTALQLNSYPFCPDPSRVMGLAPHTDTSLLTILYQSTINGL 238

Query: 241 QIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPP 300
           +IFK  VGWV V P +G+LVVNVGDL HILSNA+FP+VLHRV + +K+QRLSLAYFY+PP
Sbjct: 239 EIFKDGVGWVLVSPTNGSLVVNVGDLLHILSNAQFPSVLHRVVLKEKQQRLSLAYFYSPP 298

Query: 301 TDSTVVPI-VKSGQVARYRPVTVKEFISLKAKSPEKALSCIK 341
           TD  V P+ +   Q+  YR V+V+E+I +KAK+ EKALS I+
Sbjct: 299 TDFDVSPLALNPAQIPLYRSVSVREYIHIKAKNVEKALSLIR 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356507772|ref|XP_003522638.1| PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356518262|ref|XP_003527798.1| PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|255549086|ref|XP_002515599.1| gibberellin 3-beta hydroxylase, putative [Ricinus communis] gi|223545543|gb|EEF47048.1| gibberellin 3-beta hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225430186|ref|XP_002282411.1| PREDICTED: gibberellin 3-beta-dioxygenase 1 [Vitis vinifera] gi|296081987|emb|CBI20992.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|384368295|emb|CBL59327.1| Gibberellin 3-oxidase [Cucurbita maxima] Back     alignment and taxonomy information
>gi|114329242|gb|ABI64150.1| gibberellin 3-oxidase [Pisum sativum] Back     alignment and taxonomy information
>gi|50428333|dbj|BAD30037.1| gibberellin 3beta-hydroxylase3 [Daucus carota] Back     alignment and taxonomy information
>gi|357436835|ref|XP_003588693.1| Gibberellin 3-beta-dioxygenase [Medicago truncatula] gi|355477741|gb|AES58944.1| Gibberellin 3-beta-dioxygenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|304636275|gb|ADM47339.1| gibberellin 3-oxidase 3 [Marah macrocarpus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
TAIR|locus:2196623358 GA3OX1 "gibberellin 3-oxidase 0.918 0.877 0.479 1.8e-78
TAIR|locus:2034205347 GA3OX2 "gibberellin 3-oxidase 0.976 0.962 0.444 1.9e-76
TAIR|locus:2034195355 GA3OX4 "gibberellin 3-oxidase 0.926 0.892 0.437 4.8e-71
TAIR|locus:2119068349 GA3OX3 "gibberellin 3-oxidase 0.915 0.896 0.425 3e-69
UNIPROTKB|Q9FU53373 P0013F10.29 "GA 3beta-hydroxyl 0.926 0.849 0.401 9.7e-64
UNIPROTKB|Q6AT12384 OSJNBa0029B02.17 "Putative gib 0.836 0.744 0.375 8e-53
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.862 0.835 0.347 6.4e-44
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.824 0.787 0.336 1.4e-41
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.809 0.760 0.354 1.2e-40
TAIR|locus:2086789361 AT3G13610 [Arabidopsis thalian 0.885 0.839 0.316 9.9e-39
TAIR|locus:2196623 GA3OX1 "gibberellin 3-oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 160/334 (47%), Positives = 218/334 (65%)

Query:    25 DFNSVCSLPESHKW-PKFDDLYDNKIS-------VPVIDLRDPRVAQLIGRACEKWGVFQ 76
             DF S+  LP+S+KW PK D L+    S       +P+IDL  P     IG AC  WG FQ
Sbjct:    23 DFTSLRELPDSYKWTPKDDLLFSAAPSPPATGENIPLIDLDHPDATNQIGHACRTWGAFQ 82

Query:    77 LIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPAGATGYGIARITPFFDKYMWHEGF 136
             +  HG+PL +L+D E     LF LP ++KLK+ R+  G +GYG+ARI  FF+K MW EGF
Sbjct:    83 ISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETGVSGYGVARIASFFNKQMWSEGF 142

Query:   137 TIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLDISEEQAE---- 192
             TI G+ ++D  K LWP +H  +CD++E Y++ M  LA +L  L   SL +SEE  E    
Sbjct:   143 TITGSPLNDFRK-LWPQHHLNYCDIVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASL 201

Query:   193 --EMNWVGSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGLQIFKQEVGWV 250
               ++NW  + +ALQLN YP CPEP+RA+GLA HTD++L+TIL++N+ AGLQ+F+ ++GWV
Sbjct:   202 SSDLNW--AQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTILYQNNTAGLQVFRDDLGWV 259

Query:   251 SVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPTDSTVVPI-- 308
             +V P  G+LVVNVGDLFHILSN  F +VLHR  VNQ R RLS+A+ + P +D  + P+  
Sbjct:   260 TVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARLSVAFLWGPQSDIKISPVPK 319

Query:   309 -VKSGQVARYRPVTVKEFISLKAKSPEKALSCIK 341
              V   +   Y+ VT KE++  KA    KALS I+
Sbjct:   320 LVSPVESPLYQSVTWKEYLRTKATHFNKALSMIR 353
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;TAS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009686 "gibberellin biosynthetic process" evidence=IMP;TAS
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0009639 "response to red or far red light" evidence=IEP
GO:0008134 "transcription factor binding" evidence=IPI
GO:0010114 "response to red light" evidence=IEP
GO:0016707 "gibberellin 3-beta-dioxygenase activity" evidence=IDA;IMP;TAS
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS
TAIR|locus:2034205 GA3OX2 "gibberellin 3-oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034195 GA3OX4 "gibberellin 3-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119068 GA3OX3 "gibberellin 3-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FU53 P0013F10.29 "GA 3beta-hydroxylase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6AT12 OSJNBa0029B02.17 "Putative gibberellin 3 beta-hydroxylase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086789 AT3G13610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39103G3OX1_ARATH1, ., 1, 4, ., 1, 1, ., 1, 50.46890.97070.9273yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.14.11.150.914
3rd Layer1.14.110.921
4th Layer1.14.11.9LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GA3ox4
gibberellin 3-oxidase (EC-1.14.11.15) (341 aa)
(Populus trichocarpa)
Predicted Functional Partners:
CPS2
copalyl diphosphate synthase (EC-5.5.1.13) (807 aa)
      • 0.686
CPS1
copalyl diphosphate synthase (EC-5.5.1.13) (795 aa)
      • 0.685

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 0.0
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 4e-55
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 8e-54
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-52
PLN02216357 PLN02216, PLN02216, protein SRG1 4e-52
PLN02704335 PLN02704, PLN02704, flavonol synthase 5e-48
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 4e-47
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 7e-45
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 8e-45
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-44
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-44
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-44
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-42
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 3e-41
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-40
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-39
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 5e-36
PLN02485329 PLN02485, PLN02485, oxidoreductase 4e-34
PLN02997325 PLN02997, PLN02997, flavonol synthase 6e-34
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 4e-32
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 4e-32
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 2e-29
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 1e-28
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-28
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-24
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 1e-23
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 2e-19
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 1e-06
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information 
 Score =  514 bits (1325), Expect = 0.0
 Identities = 198/355 (55%), Positives = 260/355 (73%), Gaps = 22/355 (6%)

Query: 5   TTLSEAYREHPLHPHHIIPIDFNSVCSLPESHKWPKFDDLYDN--------KISVPVIDL 56
           +TLS+A+R HPLH +HIIP+DF S+ +LP+SH W   DDL  +          S+PVIDL
Sbjct: 3   STLSDAFRSHPLHLNHIIPLDFTSLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDL 62

Query: 57  RDPRVAQLIGRACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPAGAT 116
            DP    LIG ACE WGVFQ+  HGIPL++L D ES+ RRLFSLP+++KLKA R+P G +
Sbjct: 63  SDPNALTLIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVS 122

Query: 117 GYGIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQL 176
           GYG+ARI+ FF+K MW EGFTIMG+ + +HA+QLWP +H KFCDVME YQK+M  LA++L
Sbjct: 123 GYGVARISSFFNKKMWSEGFTIMGSPL-EHARQLWPQDHTKFCDVMEEYQKEMKKLAERL 181

Query: 177 TQLIFKSLDISEEQAEEMNWVG-------SSSALQLNSYPSCPEPNRAVGLAPHTDTSLI 229
             L+  SL I+EE   ++ W G       + +ALQLNSYP CP+P+RA+GLAPHTD+SL+
Sbjct: 182 MWLMLGSLGITEE---DIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLL 238

Query: 230 TILHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQ 289
           TIL++++ +GLQ+F++ VGWV+V PV G+LVVNVGDL HILSN RFP+VLHR  VN+ R 
Sbjct: 239 TILYQSNTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLHILSNGRFPSVLHRAVVNKTRH 298

Query: 290 RLSLAYFYNPPTDSTVVPI---VKSGQVARYRPVTVKEFISLKAKSPEKALSCIK 341
           R+S+AYFY PP+D  + P+   V       YR VT KE+++ KAK   KALS I+
Sbjct: 299 RISVAYFYGPPSDVQISPLPKLVDPNHPPLYRSVTWKEYLATKAKHFNKALSLIR 353

Length = 358
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 342
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.9
PLN03176120 flavanone-3-hydroxylase; Provisional 99.81
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.45
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.11
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.37
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 92.6
PRK08130213 putative aldolase; Validated 83.13
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information 
Probab=100.00  E-value=4.4e-82  Score=605.11  Aligned_cols=335  Identities=59%  Similarity=1.032  Sum_probs=301.1

Q ss_pred             cchhHhhhcCCCCCCcccccccCCCCCCCCCCcCCCCCC--CC------CCCCCCceeeCCChHHHHHHHHHHHhccEEE
Q 043251            5 TTLSEAYREHPLHPHHIIPIDFNSVCSLPESHKWPKFDD--LY------DNKISVPVIDLRDPRVAQLIGRACEKWGVFQ   76 (342)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~------~~~~~iPvIDls~~~~~~~l~~A~~~~GFF~   76 (342)
                      .|++.+.+.+|.|-++|+.+..+.+.+||++|++|..++  +.      ....+||||||++.+++++|.+||++|||||
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~~~~~~~l~~Ac~~~GFF~   82 (358)
T PLN02254          3 STLSDAFRSHPLHLNHIIPLDFTSLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSDPNALTLIGHACETWGVFQ   82 (358)
T ss_pred             cchhhhhccCCcccccccccchhhhccCChhhcCChhhccCccccccccCcCCCCCeEeCCCHHHHHHHHHHHHHCCEEE
Confidence            578889999999999998777777779999999999887  31      1235799999999889999999999999999


Q ss_pred             EEcCCCChHHHHHHHHHHHHhcCCCHHHHhhhccCCCCccccccccccCCCCCCcccccceeccCCccccccCCCCCCch
Q 043251           77 LIYHGIPLNVLKDAESEARRLFSLPSRQKLKALRAPAGATGYGIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHA  156 (342)
Q Consensus        77 l~nhGi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~wP~~~~  156 (342)
                      |+||||+.++++++++++++||+||.|+|+++......++||+.........+.||+|.|.+.. .|.....|.||+.++
T Consensus        83 vvnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~-~p~~~~~~~wP~~~~  161 (358)
T PLN02254         83 VTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSGYGVARISSFFNKKMWSEGFTIMG-SPLEHARQLWPQDHT  161 (358)
T ss_pred             EEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCcccccccccccccCCCCceeeEEeec-CccccchhhCCCCch
Confidence            9999999999999999999999999999999986666788998766555556789999999865 454446789999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhc-----cCCccceeccccCCCCCccCCccccCCCCCCceEE
Q 043251          157 KFCDVMETYQKKMNILADQLTQLIFKSLDISEEQAEEMNW-----VGSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITI  231 (342)
Q Consensus       157 ~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~-----~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTl  231 (342)
                      +||+++++|+++|.+|+.+||++|+++||+++++|.. .+     .+..+.||++|||+|+.++..+|+++|||+|+|||
T Consensus       162 ~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~-~~~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTi  240 (358)
T PLN02254        162 KFCDVMEEYQKEMKKLAERLMWLMLGSLGITEEDIKW-AGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLTI  240 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-HhhcccccCcceeEEEecCCCCCCcccccCcCCccCCCcEEE
Confidence            9999999999999999999999999999999888753 22     12367899999999999888999999999999999


Q ss_pred             EeeCCCCceeEEecCCceEEecCCCCcEEEEccchhhhhhCCccCCcccccccCCCCCeeEEEEeeCCCCCCeEecCCCC
Q 043251          232 LHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPTDSTVVPIVKS  311 (342)
Q Consensus       232 L~qd~~~GLqV~~~~g~W~~V~p~~g~~vVniGd~L~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~P~~d~~i~pl~~~  311 (342)
                      |+||+++||||++++|+|++|+|+||++||||||+||+||||+|||++|||+.+..++||||+||++|+.|++|+|++++
T Consensus       241 L~Qd~v~GLQV~~~~~~Wi~V~p~pgalVVNiGD~lq~~SNg~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~l  320 (358)
T PLN02254        241 LYQSNTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLHILSNGRFPSVLHRAVVNKTRHRISVAYFYGPPSDVQISPLPKL  320 (358)
T ss_pred             EecCCCCCceEECCCCEEEEcccCCCCEEEEhHHHHHHHhCCeeccccceeecCCCCCEEEEEEEecCCCCcEEeCcHHh
Confidence            99999999999988778999999999999999999999999999999999999888899999999999999999999988


Q ss_pred             ---CCCCCcCCccHHHHHHHHHhChhhhhcccc
Q 043251          312 ---GQVARYRPVTVKEFISLKAKSPEKALSCIK  341 (342)
Q Consensus       312 ---~~p~~y~~~t~~e~~~~~~~~~~~~~~~~~  341 (342)
                         ++|++|++++++||+..+.+.+.+.++.+|
T Consensus       321 v~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~  353 (358)
T PLN02254        321 VDPNHPPLYRSVTWKEYLATKAKHFNKALSLIR  353 (358)
T ss_pred             cCCCCCcccCCcCHHHHHHHHHHhhhhhhhhhh
Confidence               578999999999999999988888777765

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK08130 putative aldolase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-32
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-32
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 5e-31
1w9y_A319 The Structure Of Acc Oxidase Length = 319 7e-28
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 2e-15
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 2e-08
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 7e-08
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 8e-08
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (337), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 158/332 (47%), Gaps = 32/332 (9%)
Query: 27  NSVCSLPESHKWPK-----FDDLY-----DNKISVPVIDLRD---------PRVAQLIGR 67
           + + S+P+ +  PK      +D++     ++   VP IDL++             + + +
Sbjct: 12  SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 71
Query: 68  ACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLKAL--RAPAGATGYGIARITP 125
           A   WGV  LI HGIP ++++  +      FSL   +K K    +A     GYG      
Sbjct: 72  ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 131
Query: 126 FFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLD 185
              +  W + F  +          +WP   + + +    Y K + +LA ++ + +   L 
Sbjct: 132 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 191
Query: 186 ISEEQAEEMNWVGSSSAL----QLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGLQ 241
           +  ++ E+   VG    L    ++N YP CP+P  A+G+  HTD S +T +  N + GLQ
Sbjct: 192 LEPDRLEKE--VGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQ 249
Query: 242 IFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPT 301
           +F  E  WV+ K V  ++V+++GD   ILSN ++ ++LHR  VN+++ R+S A F  PP 
Sbjct: 250 LF-YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPK 308
Query: 302 DSTVV----PIVKSGQVARYRPVTVKEFISLK 329
           D  V+     +V     A++ P T  + I  K
Sbjct: 309 DKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 340
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 3e-99
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 5e-99
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-70
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-68
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-65
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 6e-65
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  296 bits (760), Expect = 3e-99
 Identities = 90/341 (26%), Positives = 160/341 (46%), Gaps = 30/341 (8%)

Query: 27  NSVCSLPESHKWPK----------FDDLYDNKISVPVIDLRD---------PRVAQLIGR 67
           + + S+P+ +  PK           ++  ++   VP IDL++             + + +
Sbjct: 13  SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72

Query: 68  ACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSRQKLK--ALRAPAGATGYGIARITP 125
           A   WGV  LI HGIP ++++  +      FSL   +K K    +A     GYG      
Sbjct: 73  ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132

Query: 126 FFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVMETYQKKMNILADQLTQLIFKSLD 185
              +  W + F  +          +WP   + + +    Y K + +LA ++ + +   L 
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192

Query: 186 ISEEQAEEM--NWVGSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITILHENSIAGLQIF 243
           +  ++ E+           +++N YP CP+P  A+G+  HTD S +T +  N + GLQ+F
Sbjct: 193 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF 252

Query: 244 KQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPTDS 303
            +   WV+ K V  ++V+++GD   ILSN ++ ++LHR  VN+++ R+S A F  PP D 
Sbjct: 253 YEG-KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDK 311

Query: 304 TVV-PI---VKSGQVARYRPVTVKEFISLK--AKSPEKALS 338
            V+ P+   V     A++ P T  + I  K   K  E+ +S
Sbjct: 312 IVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELVS 352
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 94.65
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 92.85
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 91.25
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 83.69
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 82.91
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-76  Score=568.09  Aligned_cols=308  Identities=28%  Similarity=0.512  Sum_probs=272.7

Q ss_pred             cccccCCCCCCCCCCcCCCCCCCC-CC---------CCCCceeeCCC-----h----HHHHHHHHHHHhccEEEEEcCCC
Q 043251           22 IPIDFNSVCSLPESHKWPKFDDLY-DN---------KISVPVIDLRD-----P----RVAQLIGRACEKWGVFQLIYHGI   82 (342)
Q Consensus        22 ~~~~~~~~~~~p~~~~~~~~~~~~-~~---------~~~iPvIDls~-----~----~~~~~l~~A~~~~GFF~l~nhGi   82 (342)
                      +.|..+++++||++|++|+++++. ..         ..+||||||+.     +    +++++|.+||++||||||+||||
T Consensus         8 ~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi   87 (356)
T 1gp6_A            8 ESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGI   87 (356)
T ss_dssp             HHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSC
T ss_pred             HHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCC
Confidence            445556788999999999887763 12         24699999985     2    26789999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhcCCCHHHHhhhccCC--CCccccccccccCCCCCCcccccceeccCCcc-ccccCCCCCCchhhH
Q 043251           83 PLNVLKDAESEARRLFSLPSRQKLKALRAP--AGATGYGIARITPFFDKYMWHEGFTIMGTSIH-DHAKQLWPHNHAKFC  159 (342)
Q Consensus        83 ~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~-~~~~~~wP~~~~~fr  159 (342)
                      +.++++++++.+++||+||.|+|+++....  ..++||+........++.||+|.|.+.. .|. ....|.||+.+++||
T Consensus        88 ~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~-~p~~~~~~~~wP~~~~~fr  166 (356)
T 1gp6_A           88 PADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLA-YPEEKRDLSIWPKTPSDYI  166 (356)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEE-ESGGGCCGGGSCCSSTTHH
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeec-CCccccccccCCCcchhhh
Confidence            999999999999999999999999998653  3689998766544556789999999976 333 245789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhcc---CCccceeccccCCCCCccCCccccCCCCCCceEEEeeCC
Q 043251          160 DVMETYQKKMNILADQLTQLIFKSLDISEEQAEEMNWV---GSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITILHENS  236 (342)
Q Consensus       160 ~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~---~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~  236 (342)
                      +.+++|+++|.+|+.+|+++|+++||+++++|.+ .+.   ...+.||++|||+|+.++..+|+++|||+|+||||+||+
T Consensus       167 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~-~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~  245 (356)
T 1gp6_A          167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEK-EVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM  245 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHH-HTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-HhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEEEcC
Confidence            9999999999999999999999999999988874 333   247889999999999988889999999999999999999


Q ss_pred             CCceeEEecCCceEEecCCCCcEEEEccchhhhhhCCccCCcccccccCCCCCeeEEEEeeCCCCCC-eEecCCCC---C
Q 043251          237 IAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPTDS-TVVPIVKS---G  312 (342)
Q Consensus       237 ~~GLqV~~~~g~W~~V~p~~g~~vVniGd~L~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~P~~d~-~i~pl~~~---~  312 (342)
                      ++||||++ +|+|++|+|+||++||||||+||+||||+|||++|||+.+++.+|||++||++|+.|+ +|.|++++   +
T Consensus       246 v~GLQV~~-~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~~~~  324 (356)
T 1gp6_A          246 VPGLQLFY-EGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVE  324 (356)
T ss_dssp             CCCEEEEE-TTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSS
T ss_pred             CCCeEEec-CCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhcCCC
Confidence            99999996 5699999999999999999999999999999999999998888999999999999999 99999998   5


Q ss_pred             CCCCcCCccHHHHHHHHHhC
Q 043251          313 QVARYRPVTVKEFISLKAKS  332 (342)
Q Consensus       313 ~p~~y~~~t~~e~~~~~~~~  332 (342)
                      +|++|+++|++||+..+++.
T Consensus       325 ~p~~y~~~t~~eyl~~~~~~  344 (356)
T 1gp6_A          325 SPAKFPPRTFAQHIEHKLFG  344 (356)
T ss_dssp             SCCSSCCEEHHHHHHHHHHH
T ss_pred             CCccCCCccHHHHHHHHHHh
Confidence            79999999999999987654
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 342
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 6e-53
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-51
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-51
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 7e-38
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  174 bits (442), Expect = 6e-53
 Identities = 72/296 (24%), Positives = 132/296 (44%), Gaps = 21/296 (7%)

Query: 50  SVPVIDLRD------PRVAQLIGRACEKWGVFQLIYHGIPLNVLKDAESEARRLFSLPSR 103
           + P+I L            ++I  ACE WG F+L+ HGIP  V+   E   +  +     
Sbjct: 2   NFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCME 61

Query: 104 QKLKALRAPAGATGYGIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKFCDVME 163
           Q+ K L A     G         ++   + +   I   S         P    ++ +VM 
Sbjct: 62  QRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISE-------VPDLDEEYREVMR 114

Query: 164 TYQKKMNILADQLTQLIFKSLDISEEQAEEM--NWVGSSSALQLNSYPSCPEPNRAVGLA 221
            + K++  LA++L  L+ ++L + +   +       G +   ++++YP CP+P+   GL 
Sbjct: 115 DFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLR 174

Query: 222 PHTDTSLITILHENSIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHR 281
            HTD   I +L ++         ++  W+ V P+  ++VVN+GD   +++N ++ +V+HR
Sbjct: 175 AHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHR 234

Query: 282 VSVNQKRQRLSLAYFYNPPTDSTVVPI------VKSGQVARYRPVTVKEFISLKAK 331
           V   +   R+SLA FYNP +D+ + P               Y      +++ L A 
Sbjct: 235 VIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAG 290
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 88.3
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.9e-73  Score=543.05  Aligned_cols=309  Identities=28%  Similarity=0.516  Sum_probs=266.6

Q ss_pred             cccccccCCCCCCCCCCcCCCCCCCC----------CCCCCCceeeCCCh---------HHHHHHHHHHHhccEEEEEcC
Q 043251           20 HIIPIDFNSVCSLPESHKWPKFDDLY----------DNKISVPVIDLRDP---------RVAQLIGRACEKWGVFQLIYH   80 (342)
Q Consensus        20 ~~~~~~~~~~~~~p~~~~~~~~~~~~----------~~~~~iPvIDls~~---------~~~~~l~~A~~~~GFF~l~nh   80 (342)
                      .++.|..||+++||++|++|+.+++.          ....+||||||+..         .++++|++||+++|||||+||
T Consensus         5 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nH   84 (349)
T d1gp6a_           5 RVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINH   84 (349)
T ss_dssp             CHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred             chHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence            45667889999999999999998771          35678999999842         467899999999999999999


Q ss_pred             CCChHHHHHHHHHHHHhcCCCHHHHhhhccC--CCCccccccccccCCCCCCcccccceeccCCccccccCCCCCCchhh
Q 043251           81 GIPLNVLKDAESEARRLFSLPSRQKLKALRA--PAGATGYGIARITPFFDKYMWHEGFTIMGTSIHDHAKQLWPHNHAKF  158 (342)
Q Consensus        81 Gi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~--~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~wP~~~~~f  158 (342)
                      ||+.++++++++++++||+||.|+|+++...  .+.+.||+........+..++.+.+............|.||+..+.|
T Consensus        85 GI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f  164 (349)
T d1gp6a_          85 GIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY  164 (349)
T ss_dssp             SCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccchH
Confidence            9999999999999999999999999999753  23455665544444445556666543322012235678999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhcc---CCccceeccccCCCCCccCCccccCCCCCCceEEEeeC
Q 043251          159 CDVMETYQKKMNILADQLTQLIFKSLDISEEQAEEMNWV---GSSSALQLNSYPSCPEPNRAVGLAPHTDTSLITILHEN  235 (342)
Q Consensus       159 r~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~---~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd  235 (342)
                      ++.+++|+++|.+++.+|+++++++||++++++.. .+.   ...+.||++|||+++.+...+|+++|||+|+||||+|+
T Consensus       165 ~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~-~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~  243 (349)
T d1gp6a_         165 IEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEK-EVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN  243 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHH-HTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHH-HhccccccceeeeecccccccchhhccccccCCCCcceEEEecc
Confidence            99999999999999999999999999999988863 222   13678999999999988889999999999999999999


Q ss_pred             CCCceeEEecCCceEEecCCCCcEEEEccchhhhhhCCccCCcccccccCCCCCeeEEEEeeCCCCCCeE-ecCCCC---
Q 043251          236 SIAGLQIFKQEVGWVSVKPVDGALVVNVGDLFHILSNARFPNVLHRVSVNQKRQRLSLAYFYNPPTDSTV-VPIVKS---  311 (342)
Q Consensus       236 ~~~GLqV~~~~g~W~~V~p~~g~~vVniGd~L~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~P~~d~~i-~pl~~~---  311 (342)
                      .++||||+.+ |+|++|+|.+|++|||+||+||+||||+||||+|||+.+++++||||+||++|+.|++| +|++++   
T Consensus       244 ~~~GLqv~~~-g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~  322 (349)
T d1gp6a_         244 MVPGLQLFYE-GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSV  322 (349)
T ss_dssp             SCCCEEEEET-TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCS
T ss_pred             CCcceeeecC-CceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcCC
Confidence            9999999765 69999999999999999999999999999999999999988999999999999999865 899998   


Q ss_pred             CCCCCcCCccHHHHHHHHH
Q 043251          312 GQVARYRPVTVKEFISLKA  330 (342)
Q Consensus       312 ~~p~~y~~~t~~e~~~~~~  330 (342)
                      ++|++|+++|++||++.|+
T Consensus       323 ~~p~~y~~~t~~e~~~~rl  341 (349)
T d1gp6a_         323 ESPAKFPPRTFAQHIEHKL  341 (349)
T ss_dssp             SSCCSSCCEEHHHHHHHHH
T ss_pred             CCCCCCCCccHHHHHHHHH
Confidence            7889999999999999887
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure