Citrus Sinensis ID: 043260

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MNCYFHISFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGIKTKS
Secondary Structure (PSIPRED)
cccEEEEccccEEEEEEEEEEccccccEEEEEEEccccccEEEEEEEEEEcccccHHHHcccccccccEEccccccEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccEEEccEEEEEEEcccccccEEEEEccEEEEEccccccccEEEEcccccccHHHEEcccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHccccEEccccccccccHHHHHHHHcccccccEEEEccccHHHHHHHHHHcccccEEEEEEccccccccccccccEEEccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEccHHHHHHHHccccccccEEccccEEEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccccccccccccccccEEEccEEEEccccccccEcEEEEEHHHEEEccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHccccEEEcHHHcccccHHHHHEEccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEEcccccEcccccEEEcccEEEEEEcccccccc
Coil and Loop (DISEMBL)
MNCYFHISFLKIYYAAAVVCwgegepwkveeiqveppkatEVRFKMLYASIChtdvlsskgfplplfprvlghegvgmVESIGDEvkelkegdiviptfigecrecencTSEMANLClkypftfhglmpdgssrmsirgqkLYHIFTCSTMTEYMVVDAnyvvkvdpsidlslagflscgyssgfgAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIigidknpcrkdkgeafgmtdfinpddepnkSISELVKEMThgtgvdygfeCTGVASLISEALEATKLGKGKVMAIGAaneakvplnfpaialgrnlkgtifggiktks
Flexible Loop (DISEMBL)
MNCYFHISFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAakiigidknpcrKDKGEAFgmtdfinpddepNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKvplnfpaialgrnlkgtifggiktks
Low Complexity Region (SEG)
MNCYFHISFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKgssvavfglgavglgvMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGIKTKS
Disordered region (IsUnstruct)
**CYFHISFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRK***EAFGMTDF*************LVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGI****
Disordered Region (DISOPRED)
*******SFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGIKT**
Disordered Region (DISEMBL)
MNCYFHISFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGIKTKS
Disordered Region (DISPRO)
*NCYFHISFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGIK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNCYFHISFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGIKTKS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q9SK87	386	Alcohol dehydrogenase-lik	yes	no	0.933	0.803	0.464	4e-76
Q9SK86	388	Alcohol dehydrogenase-lik	no	no	0.933	0.798	0.467	7e-74
A1L4Y2	394	Alcohol dehydrogenase-lik	no	no	0.960	0.809	0.451	3e-73
Q0V7W6	389	Alcohol dehydrogenase-lik	no	no	0.936	0.799	0.466	4e-73
Q9FH04	390	Alcohol dehydrogenase-lik	no	no	0.948	0.807	0.450	5e-73
P25141	382	Alcohol dehydrogenase 1 O	N/A	no	0.963	0.837	0.443	3e-70
Q0ITW7	379	Alcohol dehydrogenase 2 O	no	no	0.951	0.833	0.424	3e-69
Q4R1E8	379	Alcohol dehydrogenase 2 O	N/A	no	0.951	0.833	0.424	3e-69
P00333	379	Alcohol dehydrogenase 1 O	N/A	no	0.951	0.833	0.442	3e-69
P06525	379	Alcohol dehydrogenase cla	no	no	0.951	0.833	0.439	6e-69

>sp|Q9SK87|ADHL2_ARATH Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1

 Score =  285 bits (728), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 151/325 (46%), Positives = 212/325 (65%), Gaps = 15/325 (4%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSK--GFPLPLFPRVLGHE 74
           A +    GEP  +EEIQV+PP+A EVR K+L  S+CHTDV   K    PL  FPR+LGHE
Sbjct: 16  AAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSGPLARFPRILGHE 75

Query: 75  GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF------HGLM 128
            VG+VESIG++V   K+GD+V+P F  +C EC+ C S  +N C KY   +      +G+ 
Sbjct: 76  AVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDYLSNTRRYGMT 135

Query: 129 PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAA 188
              S     RG+ ++H    S+ TEY VVD  ++VK+ P I + +A  LSC  ++G GAA
Sbjct: 136 ---SRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVATGLGAA 192

Query: 189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP 248
           WK   VE+GS+V +FGLGAVGL V +  R++GAAKIIG+D NP + + G+ FG+TDF+NP
Sbjct: 193 WKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGITDFVNP 252

Query: 249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVP 308
                K+ISE+++EMT   G DY FEC G+ASL+ EA ++T+ G GK + +G   +A +P
Sbjct: 253 ALCGEKTISEVIREMTD-VGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQKA-LP 310

Query: 309 LNFPAIAL--GRNLKGTIFGGIKTK 331
           ++  +  L  GR + GT+FGG+K K
Sbjct: 311 ISLGSYDLLRGRTVCGTLFGGLKPK 335

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q9SK86|ADHL1_ARATH Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1

 Score =  277 bits (709), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 152/325 (46%), Positives = 209/325 (64%), Gaps = 15/325 (4%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSK-GF-PLPLFPRVLGHE 74
           A +C   GE   +E+I V+PP+A EVR K+L  S+CHTD+   K  F P+  FPR+LGHE
Sbjct: 18  AAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFWKLSFGPISRFPRILGHE 77

Query: 75  GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF------HGLM 128
            VG+VESIG+ V   K+GD+V+P F   C EC++C S   N C +Y   F      +G+ 
Sbjct: 78  AVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFISNTRRYGM- 136

Query: 129 PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAA 188
              S      G+ ++H    S+ +EY VVD  ++VK+ P I +  A  LSCG S+G GAA
Sbjct: 137 --ASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTGIGAA 194

Query: 189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP 248
           WK   VE+GS++A+FGLGAVGL V + AR++GAAKIIGID N  + + G+ FG TDFINP
Sbjct: 195 WKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTDFINP 254

Query: 249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVP 308
                K ISE++KEMT G GVDY FEC G+ASL++EA  +T+ G GK + +G    A  P
Sbjct: 255 TLCGEKKISEVIKEMTEG-GVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHA-AP 312

Query: 309 LNFPAIAL--GRNLKGTIFGGIKTK 331
           ++  +  L  GR + G++FGG+K+K
Sbjct: 313 ISLGSFDLLRGRVICGSLFGGLKSK 337

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|A1L4Y2|ADHL3_ARATH Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1

 Score =  275 bits (703), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 152/337 (45%), Positives = 210/337 (62%), Gaps = 18/337 (5%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFP 68
           K+    A V WG   P  ++EI V+PP+  EVR K+LY+SICHTD+    G       FP
Sbjct: 7   KVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAERAFP 66

Query: 69  RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY---PFTFH 125
           R+LGHE VG+VES+G+ VK++KEGD VIPTF GEC EC+ C  E +NLC +Y   P    
Sbjct: 67  RILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVDPMK-R 125

Query: 126 GLMPDGSSRMSI---------RGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF 176
            ++ DG +R S          + Q +YH    ST TEY V+D+  VVK+DP+  L     
Sbjct: 126 VMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQMSL 185

Query: 177 LSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDK 236
           LSCG S+G GAAW    V++G S AVFGLG+VGL V + AR +GA++IIG+D N  + +K
Sbjct: 186 LSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARGASRIIGVDANASKFEK 245

Query: 237 GEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKV 296
           G+  G+TDFINP D   K + ++++E+T G GVDY FECTG   ++ EA  +T +G G  
Sbjct: 246 GKLMGVTDFINPKDL-TKPVHQMIREITGG-GVDYSFECTGNVDVLREAFLSTHVGWGST 303

Query: 297 MAIGAANEAK-VPLNFPAIALGRNLKGTIFGGIKTKS 332
           + +G     + +PL+   +  GR + G++FGG K KS
Sbjct: 304 VLVGIYPTPRTLPLHPMELFDGRRITGSVFGGFKPKS 340

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0V7W6|ADHL5_ARATH Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1

 Score =  275 bits (703), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 151/324 (46%), Positives = 206/324 (63%), Gaps = 13/324 (4%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSK--GFPLPLFPRVLGHE 74
           A V    GE   +EEI V+PP+A EVR K++  S+CHTDV  SK    PL  FPR+LGHE
Sbjct: 19  AAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARFPRILGHE 78

Query: 75  GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSR 134
            VG++ESIG+ V   ++GD+V+P F   C EC +C S  +N C ++   F  L       
Sbjct: 79  AVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDF--LSNTRRYG 136

Query: 135 MSIR-----GQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           M+ R     G+ +YH    S+ +EY VVD  ++VK+ P I +  A  LSCG S+G GAAW
Sbjct: 137 MTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTGIGAAW 196

Query: 190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
           K   VEKGS+VAVFGLGAVGL V + AR++GA KIIG+D NP + + G+ FG TDFIN  
Sbjct: 197 KVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTDFINST 256

Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPL 309
                 ISE++KEMT G GVDY FEC G+ SL++EA  +T+ G GK + +G  ++   P+
Sbjct: 257 LCGENKISEVIKEMT-GGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLG-IDKHLTPV 314

Query: 310 NFPAIAL--GRNLKGTIFGGIKTK 331
           +  +  L  GR++ G++FGG+K K
Sbjct: 315 SLGSFDLLRGRHVCGSLFGGLKPK 338

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9FH04|ADHL7_ARATH Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1

 Score =  275 bits (702), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 145/322 (45%), Positives = 208/322 (64%), Gaps = 7/322 (2%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSK-GFPLPLFPRVLGHEG 75
           A V    GEP  +EEI V PP+  EVR +++  ++CH+DV   K   P   FPR+LGHE 
Sbjct: 21  AAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPPACFPRILGHEA 80

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMP--DGSS 133
           +G+VES+G+ VKE+ EGD V+PTF+ +C +C +C S  +NLC K+PF     MP  D SS
Sbjct: 81  IGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKVSPWMPRYDNSS 140

Query: 134 RMS-IRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
           R + + G+ L+H    S+ +EY V+D   VVK+D SI  S A  LSCG S+G GAAW+  
Sbjct: 141 RFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGVSTGVGAAWETA 200

Query: 193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP 252
           KVEKGS+V +FGLG++GL V + AR+ GA++IIG+D NP +   G+ FG+T+F+N     
Sbjct: 201 KVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFGVTEFVNSMTCE 260

Query: 253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLN- 310
              +SE++ EMT G G DY FEC G +SL+ EA    + G GK + +G     +++ L+ 
Sbjct: 261 KNRVSEVINEMTDG-GADYCFECVGSSSLVQEAYACCRQGWGKTITLGVDKPGSQICLDS 319

Query: 311 FPAIALGRNLKGTIFGGIKTKS 332
           F  +  G+ L G++FGG+K K+
Sbjct: 320 FDVLHHGKILMGSLFGGLKAKT 341

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P25141|ADH1_PETHY Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1

 Score =  265 bits (677), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 145/327 (44%), Positives = 196/327 (59%), Gaps = 7/327 (2%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL--SSKGFPLPLFP 68
           ++    A V W  G+P  +EE++V PP+  EVR K+L+ S+CHTDV    +KG   PLFP
Sbjct: 8   QVIRCKAAVAWEAGKPLVIEEVEVAPPQKMEVRLKILFTSLCHTDVYFWEAKG-QTPLFP 66

Query: 69  RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-LKYPFTFHGL 127
           R+ GHE  G+VES+G+ V +LK GD V+P F GEC++C +C SE +N+C L    T  G+
Sbjct: 67  RIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECQQCRHCKSEESNMCDLLRINTDRGV 126

Query: 128 M-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFG 186
           M  DG +R S  G+ +YH    ST +EY V  +  V K+DP   L     LSCG S+G G
Sbjct: 127 MIHDGQTRFSKDGKPIYHFVGTSTFSEYTVCHSGCVTKIDPQAPLDKVCVLSCGISTGLG 186

Query: 187 AAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI 246
           A     K  KGS+VA+FGLGAVGL   + ARI GA++IIG+D NP R +  + FG+T+F+
Sbjct: 187 ATLNVAKPTKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFNDAKKFGVTEFV 246

Query: 247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK 306
           NP D  +K + +++ EMT G GVD   ECTG  + +  A E    G G  + +G  N+  
Sbjct: 247 NPKDHGDKPVQQVIAEMTDG-GVDRSVECTGNVNAMISAFECVHDGWGVAVLVGVPNKDD 305

Query: 307 VPLNFPAIALG-RNLKGTIFGGIKTKS 332
                P   L  R LKGT FG  K KS
Sbjct: 306 AFKTHPMNLLNERTLKGTFFGNYKPKS 332

This protein is responsible for the conversion of alcohols to aldehydes in plants and is important for NAD metabolism during anaerobic respiration.

Petunia hybrida (taxid: 4102)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0ITW7|ADH2_ORYSJ Alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=ADH2 PE=2 SV=2

 Score =  262 bits (670), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 140/330 (42%), Positives = 204/330 (61%), Gaps = 14/330 (4%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL--SSKGFPLPLFP 68
           K+    A V W  G+P  +EE++V PP+A EVR K+LY ++CHTDV    +KG   P+FP
Sbjct: 6   KVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKG-QTPVFP 64

Query: 69  RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC--LKYPFTFHG 126
           R+LGHE  G+VES+G+ V EL  GD V+P F GEC+EC++C SE +N+C  L+       
Sbjct: 65  RILGHEAGGIVESVGEGVTELAPGDHVLPVFTGECKECDHCKSEESNMCDLLRINVDRGV 124

Query: 127 LMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFG 186
           ++ DG SR +I+G+ ++H    ST +EY V+    + K++P   L     LSCG+S+GFG
Sbjct: 125 MIGDGKSRFTIKGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCILSCGFSTGFG 184

Query: 187 AAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI 246
           A     K +KG +VA+FGLGAVGL  M+ AR+ GA++IIG+D NP + ++ + FG TDF+
Sbjct: 185 ATVNVAKPKKGQTVAIFGLGAVGLAAMEGARLSGASRIIGVDLNPAKFEQAKKFGCTDFV 244

Query: 247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK 306
           NP D  +K + E++ EMT+G G+D   ECTG  + +    E    G G  + +G   +  
Sbjct: 245 NPKDH-SKPVHEVLIEMTNG-GLDRAVECTGNINAMISCFECVHDGWGVAVLVGVPTKDD 302

Query: 307 V----PLNFPAIALGRNLKGTIFGGIKTKS 332
           V    P+NF      + LKGT FG  K ++
Sbjct: 303 VFKTHPMNFLN---EKTLKGTFFGNYKPRT 329

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q4R1E8|ADH2_ORYSI Alcohol dehydrogenase 2 OS=Oryza sativa subsp. indica GN=ADH2 PE=2 SV=1

 Score =  262 bits (670), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 140/330 (42%), Positives = 204/330 (61%), Gaps = 14/330 (4%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL--SSKGFPLPLFP 68
           K+    A V W  G+P  +EE++V PP+A EVR K+LY ++CHTDV    +KG   P+FP
Sbjct: 6   KVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKG-QTPVFP 64

Query: 69  RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC--LKYPFTFHG 126
           R+LGHE  G+VES+G+ V EL  GD V+P F GEC+EC++C SE +N+C  L+       
Sbjct: 65  RILGHEAGGIVESVGEGVTELAPGDHVLPVFTGECKECDHCKSEESNMCDLLRINVDRGV 124

Query: 127 LMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFG 186
           ++ DG SR +I+G+ ++H    ST +EY V+    + K++P   L     LSCG+S+GFG
Sbjct: 125 MIGDGKSRFTIKGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCILSCGFSTGFG 184

Query: 187 AAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI 246
           A     K +KG +VA+FGLGAVGL  M+ AR+ GA++IIG+D NP + ++ + FG TDF+
Sbjct: 185 ATVNVAKPKKGQTVAIFGLGAVGLAAMEGARLSGASRIIGVDLNPAKFEQAKKFGCTDFV 244

Query: 247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK 306
           NP D  +K + E++ EMT+G G+D   ECTG  + +    E    G G  + +G   +  
Sbjct: 245 NPKDH-SKPVHEVLIEMTNG-GLDRAVECTGNINAMISCFECVHDGWGVAVLVGVPTKDD 302

Query: 307 V----PLNFPAIALGRNLKGTIFGGIKTKS 332
           V    P+NF      + LKGT FG  K ++
Sbjct: 303 VFKTHPMNFLN---EKTLKGTFFGNYKPRT 329

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P00333|ADH1_MAIZE Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1

 Score =  262 bits (669), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 146/330 (44%), Positives = 201/330 (60%), Gaps = 14/330 (4%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL--SSKGFPLPLFP 68
           K+    A V W  G+P  +EE++V PP+A EVR K+L+ S+CHTDV    +KG   P+FP
Sbjct: 6   KVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKG-QTPVFP 64

Query: 69  RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-LKYPFTFHGL 127
           R+ GHE  G++ES+G+ V ++  GD V+P F GEC+EC +C S  +N+C L    T  G+
Sbjct: 65  RIFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGV 124

Query: 128 M-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFG 186
           M  DG SR SI G+ +YH    ST +EY V+    V K++P   L     LSCGYS+G G
Sbjct: 125 MIADGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGYSTGLG 184

Query: 187 AAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI 246
           A+    K  KGS+VAVFGLGAVGL   + ARI GA++IIG+D NP R ++   FG T+F+
Sbjct: 185 ASINVAKPPKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEARKFGCTEFV 244

Query: 247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-- 304
           NP D  NK + E++ EMT+G GVD   ECTG  + + +A E    G G  + +G  ++  
Sbjct: 245 NPKDH-NKPVQEVLAEMTNG-GVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDA 302

Query: 305 --AKVPLNFPAIALGRNLKGTIFGGIKTKS 332
                P+NF      R LKGT FG  K ++
Sbjct: 303 EFKTHPMNF---LNERTLKGTFFGNYKPRT 329

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P06525|ADH1_ARATH Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2

 Score =  261 bits (667), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 145/330 (43%), Positives = 199/330 (60%), Gaps = 14/330 (4%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL--SSKGFPLPLFP 68
           +I    A V W  G+P  +EE++V PP+  EVR K+L+ S+CHTDV    +KG   PLFP
Sbjct: 6   QIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKG-QTPLFP 64

Query: 69  RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC--LKYPFTFHG 126
           R+ GHE  G+VES+G+ V +L+ GD V+P F GEC EC +C SE +N+C  L+      G
Sbjct: 65  RIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTERGG 124

Query: 127 LMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFG 186
           ++ DG SR SI G+ +YH    ST +EY VV +  V K++P   L     +SCG S+G G
Sbjct: 125 MIHDGESRFSINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLSTGLG 184

Query: 187 AAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI 246
           A     K +KG SVA+FGLGAVGLG  + ARI GA++IIG+D N  R D+ + FG+T+ +
Sbjct: 185 ATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGVTECV 244

Query: 247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK 306
           NP D  +K I +++ EMT G GVD   ECTG    + +A E    G G  + +G  ++  
Sbjct: 245 NPKDH-DKPIQQVIAEMTDG-GVDRSVECTGSVQAMIQAFECVHDGWGVAVLVGVPSKDD 302

Query: 307 V----PLNFPAIALGRNLKGTIFGGIKTKS 332
                P+NF      R LKGT FG  K K+
Sbjct: 303 AFKTHPMNF---LNERTLKGTFFGNYKPKT 329

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
224142703	377	predicted protein [Populus trichocarpa]	0.969	0.854	0.667	1e-124
359478643	410	PREDICTED: LOW QUALITY PROTEIN: alcohol	0.966	0.782	0.664	1e-122
297746116	527	unnamed protein product [Vitis vinifera]	0.981	0.618	0.666	1e-122
225435026	392	PREDICTED: alcohol dehydrogenase-like 1-	0.966	0.818	0.667	1e-122
359478647	411	PREDICTED: LOW QUALITY PROTEIN: alcohol	0.966	0.781	0.656	1e-121
367460047	375	alcohol dehydrogenase-like [Glycine max]	0.966	0.856	0.645	1e-120
356543227	375	PREDICTED: alcohol dehydrogenase-like 2-	0.966	0.856	0.642	1e-120
356543237	375	PREDICTED: LOW QUALITY PROTEIN: alcohol	0.966	0.856	0.636	1e-119
224144873	378	predicted protein [Populus trichocarpa]	0.966	0.849	0.651	1e-118
388507902	374	unknown [Lotus japonicus]	0.963	0.855	0.633	1e-118

>gi|224142703|ref|XP_002324694.1| predicted protein [Populus trichocarpa] gi|222866128|gb|EEF03259.1| predicted protein [Populus trichocarpa]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/322 (66%), Positives = 261/322 (81%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           ++    A VCWG GEP KVEEIQVEPPK +E+R K+L AS+CHTD L +KG  +PLFPRV
Sbjct: 8   QVITCKAAVCWGVGEPLKVEEIQVEPPKFSEIRVKVLCASLCHTDTLYAKGSLIPLFPRV 67

Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
           LGHEGVG+VESIG+ V++LKEGD+VIP ++GEC+ECENCTS   NLCLKYP   +GLMPD
Sbjct: 68  LGHEGVGVVESIGEGVRDLKEGDLVIPAYLGECQECENCTSGKTNLCLKYPLILNGLMPD 127

Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
           G+SRMSI GQKLYH+ TCST +EYMV+D NYVVK+DPSIDL  A FLSCG+S+GFG+AW+
Sbjct: 128 GTSRMSINGQKLYHLITCSTWSEYMVIDTNYVVKIDPSIDLPHASFLSCGFSTGFGSAWR 187

Query: 191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
           E  VEKGSSVAV GLGAVGLG ++ AR+QGAAKIIGIDKN  +++KG+AFGMTDFINPD+
Sbjct: 188 EANVEKGSSVAVIGLGAVGLGAIEGARMQGAAKIIGIDKNEKKREKGQAFGMTDFINPDE 247

Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN 310
             NK ISEL+K++T G GVDY FECTGV  LI+EAL ATK GKG+   +GA  +  V +N
Sbjct: 248 YFNKPISELIKDITGGLGVDYCFECTGVGPLINEALLATKPGKGETFVVGAGTDLTVSIN 307

Query: 311 FPAIALGRNLKGTIFGGIKTKS 332
           F  +  G  LKG++FGG+K KS
Sbjct: 308 FLPLLCGGTLKGSLFGGLKIKS 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478643|ref|XP_002281275.2| PREDICTED: LOW QUALITY PROTEIN: alcohol dehydrogenase-like 1-like [Vitis vinifera]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/322 (66%), Positives = 257/322 (79%), Gaps = 1/322 (0%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           ++    A VCWG GE  KVEEIQVEPPK++EVR KMLYASICHTD+L   GFPLPLFPRV
Sbjct: 42  QVITCKAAVCWGAGEAVKVEEIQVEPPKSSEVRVKMLYASICHTDILYCSGFPLPLFPRV 101

Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
            GHEGVGMVES+G+ V  LKEGD+VIPT++GEC ECENC S   NLCL++P T +GLM D
Sbjct: 102 PGHEGVGMVESVGENVIALKEGDLVIPTYLGECGECENCRSGKTNLCLEHPLTLNGLMLD 161

Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
           G+SRMSIRGQ+LYH+F+CST   YMVV+ANY+VK+D  I LS A FLSCG+S+G+GAAWK
Sbjct: 162 GTSRMSIRGQRLYHLFSCSTWAGYMVVNANYLVKIDSRIALSEASFLSCGFSTGYGAAWK 221

Query: 191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
           E KVEKGSSVAV GLGAVGLGV++ AR QGAA+IIGIDKN  +++ G+ FGMTDFINP  
Sbjct: 222 EAKVEKGSSVAVLGLGAVGLGVLEGARNQGAARIIGIDKNERKREMGKTFGMTDFINP-S 280

Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN 310
           + NK ISELV E+T   GVDY FEC G+ SLI+E L+ TK+GKG ++ IGA N+A V +N
Sbjct: 281 KSNKPISELVHELTGXEGVDYSFECIGIQSLINEVLQTTKVGKGMLIVIGAGNKASVDIN 340

Query: 311 FPAIALGRNLKGTIFGGIKTKS 332
           F  + LGR + G IFGGIK +S
Sbjct: 341 FLTLLLGRTINGCIFGGIKVQS 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746116|emb|CBI16172.3| unnamed protein product [Vitis vinifera]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/330 (66%), Positives = 264/330 (80%), Gaps = 4/330 (1%)

Query: 4   YF-HISFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF 62
           YF +I F++   AA  VCWG GE  KVEEIQVEPPK++EVR KMLYASICHTD+      
Sbjct: 149 YFNYILFVRCLTAA--VCWGLGEAMKVEEIQVEPPKSSEVRVKMLYASICHTDIFYCSEL 206

Query: 63  PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF 122
            LP+FP+V GHEGVG+VES+G+ V  LKEGD+VIPT++GEC ECENC S   N+CLK+P 
Sbjct: 207 SLPMFPKVPGHEGVGVVESVGENVTGLKEGDVVIPTYLGECGECENCRSPKTNVCLKHPV 266

Query: 123 TFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYS 182
           TF GLMPDG+SRMSIRGQ+L+HIF+CST TEYMVV+ANY+VK+DP I  S A FLSCG+S
Sbjct: 267 TFTGLMPDGTSRMSIRGQRLHHIFSCSTWTEYMVVNANYLVKIDPRIAPSDASFLSCGFS 326

Query: 183 SGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM 242
           +G+GAAWK+ KVEKGSSVAV GLGAVGLGV+  AR QGAA+IIGIDKN  R++ GEAFGM
Sbjct: 327 TGYGAAWKDAKVEKGSSVAVLGLGAVGLGVLQGARNQGAARIIGIDKNERRREVGEAFGM 386

Query: 243 TDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAA 302
           TDFINP +E NKSISELV E+T G GVDY FECTG+ SL++EAL+ATK+GKG  M +G A
Sbjct: 387 TDFINP-NESNKSISELVNELTGGQGVDYSFECTGIPSLVNEALQATKVGKGMSMVLGIA 445

Query: 303 NEAKVPLNFPAIALGRNLKGTIFGGIKTKS 332
           N   V ++  A+  G+ LKG  FGGIK +S
Sbjct: 446 NVPTVDISLMALLSGKTLKGCFFGGIKVQS 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435026|ref|XP_002281265.1| PREDICTED: alcohol dehydrogenase-like 1-like [Vitis vinifera]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/322 (66%), Positives = 258/322 (80%), Gaps = 1/322 (0%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           ++    A VCWG GE  KVEEIQVEPPK++EVR KMLYASICHTD+       LP+FP+V
Sbjct: 24  EVITCKAAVCWGLGEAMKVEEIQVEPPKSSEVRVKMLYASICHTDIFYCSELSLPMFPKV 83

Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
            GHEGVG+VES+G+ V  LKEGD+VIPT++GEC ECENC S   N+CLK+P TF GLMPD
Sbjct: 84  PGHEGVGVVESVGENVTGLKEGDVVIPTYLGECGECENCRSPKTNVCLKHPVTFTGLMPD 143

Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
           G+SRMSIRGQ+L+HIF+CST TEYMVV+ANY+VK+DP I  S A FLSCG+S+G+GAAWK
Sbjct: 144 GTSRMSIRGQRLHHIFSCSTWTEYMVVNANYLVKIDPRIAPSDASFLSCGFSTGYGAAWK 203

Query: 191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
           + KVEKGSSVAV GLGAVGLGV+  AR QGAA+IIGIDKN  R++ GEAFGMTDFINP +
Sbjct: 204 DAKVEKGSSVAVLGLGAVGLGVLQGARNQGAARIIGIDKNERRREVGEAFGMTDFINP-N 262

Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN 310
           E NKSISELV E+T G GVDY FECTG+ SL++EAL+ATK+GKG  M +G AN   V ++
Sbjct: 263 ESNKSISELVNELTGGQGVDYSFECTGIPSLVNEALQATKVGKGMSMVLGIANVPTVDIS 322

Query: 311 FPAIALGRNLKGTIFGGIKTKS 332
             A+  G+ LKG  FGGIK +S
Sbjct: 323 LMALLSGKTLKGCFFGGIKVQS 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478647|ref|XP_003632151.1| PREDICTED: LOW QUALITY PROTEIN: alcohol dehydrogenase-like 1-like [Vitis vinifera]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/323 (65%), Positives = 258/323 (79%), Gaps = 2/323 (0%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           ++    A VCWG GE  KVEEIQVEPPK++EVR KM+YASICHTD+L   GFPLPLFP+V
Sbjct: 42  QVITCKAAVCWGAGEAVKVEEIQVEPPKSSEVRVKMMYASICHTDILCCSGFPLPLFPKV 101

Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
            GHEGVGM+ES+G+ V  LKEGD+VIPT++GEC ECENC S   NLCL++P T +GLM D
Sbjct: 102 PGHEGVGMMESVGENVIALKEGDLVIPTYLGECGECENCKSGKTNLCLEHPLTLNGLMLD 161

Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
           G+SRMSIRGQ+LYH+F+CST  EYMVV+ANY+VK+D  I LS A FLSCG+S+G+GAAWK
Sbjct: 162 GTSRMSIRGQRLYHLFSCSTWAEYMVVNANYLVKIDSRIALSEASFLSCGFSTGYGAAWK 221

Query: 191 EFKVEKGSSVAVFGLGAVGLG-VMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
             KVEKGSSVAV GLGAVG G V++ AR QGAA+IIGIDKN  R + G+ FGMTDFINP 
Sbjct: 222 AAKVEKGSSVAVLGLGAVGXGYVLEGARNQGAARIIGIDKNERRCEMGKNFGMTDFINP- 280

Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPL 309
            + NK ISELV+E+T G GVDY FEC+G+ SLI+E L+ TK+GKG ++ IGA N A + +
Sbjct: 281 SKSNKPISELVRELTRGEGVDYSFECSGIQSLINEVLQPTKVGKGMLIVIGAGNNASMDI 340

Query: 310 NFPAIALGRNLKGTIFGGIKTKS 332
           NF  + LGR +KG IFGGIK +S
Sbjct: 341 NFLTLLLGRTIKGCIFGGIKVQS 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|367460047|ref|NP_001238395.2| alcohol dehydrogenase-like [Glycine max]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/322 (64%), Positives = 259/322 (80%), Gaps = 1/322 (0%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           +I    A +CWG G+P  VEEIQV+PPKATEVR KML ASIC TD+ S+KGFP   FP  
Sbjct: 6   EIITCKAAICWGIGKPVTVEEIQVDPPKATEVRVKMLCASICSTDISSTKGFPHTNFPIA 65

Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
           LGHEGVG++ES+GD+V  LKEGD+VIPT+IGEC+ECENC SE  NLC+ YP  + GLMPD
Sbjct: 66  LGHEGVGIIESVGDQVANLKEGDVVIPTYIGECQECENCVSEKTNLCMTYPVRWTGLMPD 125

Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
            +SRMSIRG+++YHIF+C+T +EYMV DANYV+KVDP+ID + A F+SCG+S+GFGAAWK
Sbjct: 126 NTSRMSIRGERIYHIFSCATWSEYMVSDANYVLKVDPTIDRAHASFISCGFSTGFGAAWK 185

Query: 191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
           E KVE GS+VAVFGLGAVGLG +  +++QGA++IIGID N  ++ KGEAFG+TDFINP D
Sbjct: 186 EAKVESGSTVAVFGLGAVGLGAVIGSKMQGASRIIGIDTNENKRAKGEAFGITDFINPGD 245

Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN 310
             NKS SELVKE++ G GVDY FECTGV++L+SE+LEATK+G GK + IG   E  +PL 
Sbjct: 246 S-NKSASELVKELSGGMGVDYSFECTGVSTLLSESLEATKIGTGKAIVIGVGIEITLPLG 304

Query: 311 FPAIALGRNLKGTIFGGIKTKS 332
             AI LGR LKG++FGG++  S
Sbjct: 305 LFAILLGRTLKGSVFGGLRAIS 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543227|ref|XP_003540064.1| PREDICTED: alcohol dehydrogenase-like 2-like isoform 1 [Glycine max]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/322 (64%), Positives = 258/322 (80%), Gaps = 1/322 (0%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           +I    A +CWG G+P  VEEIQV+PPKATEVR KML ASIC TD+ S+KGFP   FP  
Sbjct: 6   EIITCKAAICWGIGKPVTVEEIQVDPPKATEVRVKMLCASICSTDISSTKGFPHTNFPIA 65

Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
           LGHEGVG++ES+GD+V  LKEGD+VIPT+IGEC+ECENC SE  NLC+ YP  + GLMPD
Sbjct: 66  LGHEGVGIIESVGDQVTNLKEGDVVIPTYIGECQECENCVSEKTNLCMTYPVRWTGLMPD 125

Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
            +SRMSIRG+++YHIF+C+T +EYMV DANYV+KVDP+ID + A F+SCG+S+GFGAAWK
Sbjct: 126 NTSRMSIRGERIYHIFSCATWSEYMVSDANYVLKVDPTIDRAHASFISCGFSTGFGAAWK 185

Query: 191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
           E KVE GS+VAVFGLGAVGLG +  +++QGA++IIGID N  ++ KGEAFG+TDFINP D
Sbjct: 186 EAKVESGSTVAVFGLGAVGLGAVIGSKMQGASRIIGIDTNENKRAKGEAFGITDFINPGD 245

Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN 310
             NKS SELVKE++ G G DY FECTGV++L+SE+LEATK+G GK + IG   E  +PL 
Sbjct: 246 S-NKSASELVKELSGGMGADYSFECTGVSTLLSESLEATKIGTGKAIVIGVGIEITLPLG 304

Query: 311 FPAIALGRNLKGTIFGGIKTKS 332
             AI LGR LKG++FGG++  S
Sbjct: 305 LFAILLGRTLKGSVFGGLRAIS 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543237|ref|XP_003540069.1| PREDICTED: LOW QUALITY PROTEIN: alcohol dehydrogenase-like 2-like [Glycine max]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/322 (63%), Positives = 257/322 (79%), Gaps = 1/322 (0%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A +CWG G+P  VEEIQV+PPKATEVR KML ASICHTD+ S++GFP   FP  
Sbjct: 6   KVITCKATICWGIGKPITVEEIQVDPPKATEVRVKMLCASICHTDISSTEGFPHGKFPLA 65

Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
           LGHEGVG++ES+GD+VK LKEGD+VIPTF+G+C ECENC SE  NLCLKYP  + GLMPD
Sbjct: 66  LGHEGVGVIESVGDQVKNLKEGDVVIPTFLGQCXECENCVSEKTNLCLKYPVMWTGLMPD 125

Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
            +SRMSIRG+++YHI +C+T +EYMV DANY++KVDP+ID + A F+SCG+S+GFGAAWK
Sbjct: 126 NTSRMSIRGERIYHITSCATWSEYMVSDANYILKVDPTIDRAHASFISCGFSTGFGAAWK 185

Query: 191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
           E  VE GS+VAVFGLGAVGLG +  A++QGA++IIGID N  +++KGEAFG+TDFINP D
Sbjct: 186 EANVESGSTVAVFGLGAVGLGAVIGAKLQGASRIIGIDTNENKREKGEAFGITDFINPGD 245

Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN 310
             N S SELVKE+T G GVDY FECTGV+++++E+LEATK+G GK + I    E  +P+ 
Sbjct: 246 SDN-SASELVKELTGGMGVDYSFECTGVSTVLTESLEATKIGTGKTIVISVGAEPILPVG 304

Query: 311 FPAIALGRNLKGTIFGGIKTKS 332
             AI  GR LKGT+FGG+K  S
Sbjct: 305 LFAILHGRTLKGTLFGGLKAVS 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144873|ref|XP_002325446.1| predicted protein [Populus trichocarpa] gi|222862321|gb|EEE99827.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/324 (65%), Positives = 255/324 (78%), Gaps = 3/324 (0%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSS--KGFPLPLFP 68
           +I    A V WG GEP KVEEIQ+EPPK+TEVR +MLYAS+CHTDVL +  KG P+PLFP
Sbjct: 8   QIITCKAAVIWGSGEPLKVEEIQIEPPKSTEVRVRMLYASVCHTDVLRARRKGDPVPLFP 67

Query: 69  RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM 128
           RVLGHEGVGMVES GDEV  L+EGD VIPT I EC  CENCTS   NLCL YP +  GLM
Sbjct: 68  RVLGHEGVGMVESFGDEVNGLEEGDYVIPTMIAECEACENCTSANTNLCLTYPLSRSGLM 127

Query: 129 PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAA 188
            DG+SRMSI GQKLYH+FTCST +EYMV+D+NYV K+DPSI L  A  LSCG+S+GFGAA
Sbjct: 128 LDGTSRMSINGQKLYHMFTCSTWSEYMVIDSNYVNKIDPSIPLPHASVLSCGFSTGFGAA 187

Query: 189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP 248
           WKE +V+ GS+VAV GLGAVGLGV + AR+ GAAKIIG+DKN  +KDKG AFGMTDFINP
Sbjct: 188 WKEAQVKMGSTVAVLGLGAVGLGVTEGARMLGAAKIIGVDKNSMKKDKGLAFGMTDFINP 247

Query: 249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVP 308
           D+  +KSIS+++K++T G GVDY FEC G  SLI++A++ATK GKGK + IG    + V 
Sbjct: 248 DECSDKSISQMIKDLTGGMGVDYCFECVGAESLINQAIQATKEGKGKTIVIGGGISS-VK 306

Query: 309 LNFPAIALGRNLKGTIFGGIKTKS 332
           +++  +  GR LKG++FGG+K KS
Sbjct: 307 IDYLPLLSGRTLKGSLFGGLKVKS 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507902|gb|AFK42017.1| unknown [Lotus japonicus]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/322 (63%), Positives = 254/322 (78%), Gaps = 2/322 (0%)

Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           ++    A +CWG G+P  VEEIQV+PPKATEVR KML AS+CHTD+ S++GFP  ++P V
Sbjct: 7   EVITCKAAICWGVGKPVTVEEIQVDPPKATEVRVKMLCASVCHTDITSTQGFP-GVYPVV 65

Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
           LGHEGVG+VES+GD+VK LKEGD+VIPT+IGEC+ECENC S   NLCL YP    GLMPD
Sbjct: 66  LGHEGVGVVESVGDQVKSLKEGDVVIPTYIGECQECENCVSGKTNLCLTYPIRLTGLMPD 125

Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
            +SRMSIRGQ+L+H+ +C+T +EYMV D NYV+KVDPSID + A F+SCG+S+GFGAAWK
Sbjct: 126 NTSRMSIRGQRLHHVLSCATWSEYMVADVNYVLKVDPSIDPAHASFISCGFSTGFGAAWK 185

Query: 191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
           + KVE GSSVAV GLGAVGLG +  A++ GA KIIGIDKN  +++KGEAFGMT FINP D
Sbjct: 186 QAKVESGSSVAVIGLGAVGLGAISGAKMLGATKIIGIDKNEMKREKGEAFGMTHFINPGD 245

Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN 310
              KS+SELVKE++ G  VDY FECTGV  L++E+LEATK+G G+ +AIG   E  VP  
Sbjct: 246 S-TKSVSELVKELSGGRSVDYSFECTGVPPLLTESLEATKVGTGETIAIGVGTEPIVPFG 304

Query: 311 FPAIALGRNLKGTIFGGIKTKS 332
             +I  GR L+G++FGG+KT S
Sbjct: 305 IGSILYGRTLRGSVFGGLKTIS 326

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
TAIR|locus:2009512	386	AT1G22440 [Arabidopsis thalian	0.921	0.792	0.441	4.5e-66
TAIR|locus:2009522	388	AT1G22430 [Arabidopsis thalian	0.942	0.806	0.437	2.3e-64
TAIR|locus:2157627	390	AT5G42250 [Arabidopsis thalian	0.948	0.807	0.419	2e-63
TAIR|locus:2035619	394	AT1G32780 [Arabidopsis thalian	0.960	0.809	0.415	2.6e-63
TAIR|locus:2120663	389	AT4G22110 [Arabidopsis thalian	0.942	0.804	0.425	6.9e-63
MGI|MGI:87929	374	Adh5 "alcohol dehydrogenase 5	0.939	0.834	0.425	5e-60
RGD|2292706	374	Adh5 "alcohol dehydrogenase 5	0.939	0.834	0.422	2.2e-59
UNIPROTKB|P12711	374	Adh5 "Alcohol dehydrogenase cl	0.939	0.834	0.422	2.2e-59
TAIR|locus:2025237	379	ADH1 "alcohol dehydrogenase 1"	0.960	0.841	0.400	4.5e-59
ZFIN|ZDB-GENE-011003-1	376	adh5 "alcohol dehydrogenase 5"	0.957	0.845	0.408	1.2e-58

TAIR|locus:2009512 AT1G22440 [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 139/315 (44%), Positives = 196/315 (62%)

Query:    24 GEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSK--GFPLPLFPRVLGHEGVGMVES 81
             GEP  +EEIQV+PP+A EVR K+L  S+CHTDV   K    PL  FPR+LGHE VG+VES
Sbjct:    23 GEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSGPLARFPRILGHEAVGVVES 82

Query:    82 IGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDG-SSRMS-IR 138
             IG++V   K+GD+V+P F  +C EC+ C S  +N C KY   +       G +SR    R
Sbjct:    83 IGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDYLSNTRRYGMTSRFKDSR 142

Query:   139 GQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKXX 198
             G+ ++H    S+ TEY VVD  ++VK+ P I + +A  LSC  ++G GAAWK   VE+  
Sbjct:   143 GEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVATGLGAAWKVADVEEGS 202

Query:   199 XXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISE 258
                            +  R++GAAKIIG+D NP + + G+ FG+TDF+NP     K+ISE
Sbjct:   203 TVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGITDFVNPALCGEKTISE 262

Query:   259 LVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-- 316
             +++EMT   G DY FEC G+ASL+ EA ++T+ G GK + +G   +A +P++  +  L  
Sbjct:   263 VIREMTD-VGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQKA-LPISLGSYDLLR 320

Query:   317 GRNLKGTIFGGIKTK 331
             GR + GT+FGG+K K
Sbjct:   321 GRTVCGTLFGGLKPK 335

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2009522 AT1G22430 [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 141/322 (43%), Positives = 194/322 (60%)

Query:    17 AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSK-GF-PLPLFPRVLGHE 74
             A +C   GE   +E+I V+PP+A EVR K+L  S+CHTD+   K  F P+  FPR+LGHE
Sbjct:    18 AAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFWKLSFGPISRFPRILGHE 77

Query:    75 GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDG-S 132
              VG+VESIG+ V   K+GD+V+P F   C EC++C S   N C +Y   F       G +
Sbjct:    78 AVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFISNTRRYGMA 137

Query:   133 SRMS-IRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKE 191
             SR     G+ ++H    S+ +EY VVD  ++VK+ P I +  A  LSCG S+G GAAWK 
Sbjct:   138 SRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTGIGAAWKV 197

Query:   192 FKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE 251
               VE+                 + AR++GAAKIIGID N  + + G+ FG TDFINP   
Sbjct:   198 ANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTDFINPTLC 257

Query:   252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNF 311
               K ISE++KEMT G GVDY FEC G+ASL++EA  +T+ G GK + +G    A  P++ 
Sbjct:   258 GEKKISEVIKEMTEG-GVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHA-APISL 315

Query:   312 PAIAL--GRNLKGTIFGGIKTK 331
              +  L  GR + G++FGG+K+K
Sbjct:   316 GSFDLLRGRVICGSLFGGLKSK 337

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2157627 AT5G42250 [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 135/322 (41%), Positives = 194/322 (60%)

Query:    17 AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSK-GFPLPLFPRVLGHEG 75
             A V    GEP  +EEI V PP+  EVR +++  ++CH+DV   K   P   FPR+LGHE 
Sbjct:    21 AAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPPACFPRILGHEA 80

Query:    76 VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMP--DGSS 133
             +G+VES+G+ VKE+ EGD V+PTF+ +C +C +C S  +NLC K+PF     MP  D SS
Sbjct:    81 IGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKVSPWMPRYDNSS 140

Query:   134 RMS-IRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
             R + + G+ L+H    S+ +EY V+D   VVK+D SI  S A  LSCG S+G GAAW+  
Sbjct:   141 RFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGVSTGVGAAWETA 200

Query:   193 KVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP 252
             KVEK                 + AR+ GA++IIG+D NP +   G+ FG+T+F+N     
Sbjct:   201 KVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFGVTEFVNSMTCE 260

Query:   253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLN- 310
                +SE++ EMT G G DY FEC G +SL+ EA    + G GK + +G     +++ L+ 
Sbjct:   261 KNRVSEVINEMTDG-GADYCFECVGSSSLVQEAYACCRQGWGKTITLGVDKPGSQICLDS 319

Query:   311 FPAIALGRNLKGTIFGGIKTKS 332
             F  +  G+ L G++FGG+K K+
Sbjct:   320 FDVLHHGKILMGSLFGGLKAKT 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2035619 AT1G32780 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 140/337 (41%), Positives = 197/337 (58%)

Query:    11 KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLP--LFP 68
             K+    A V WG   P  ++EI V+PP+  EVR K+LY+SICHTD+    G       FP
Sbjct:     7 KVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAERAFP 66

Query:    69 RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY---PFTFH 125
             R+LGHE VG+VES+G+ VK++KEGD VIPTF GEC EC+ C  E +NLC +Y   P    
Sbjct:    67 RILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVDPMK-R 125

Query:   126 GLMPDGSSRMSI---------RGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF 176
              ++ DG +R S          + Q +YH    ST TEY V+D+  VVK+DP+  L     
Sbjct:   126 VMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQMSL 185

Query:   177 LSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDK 236
             LSCG S+G GAAW    V++                 + AR +GA++IIG+D N  + +K
Sbjct:   186 LSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARGASRIIGVDANASKFEK 245

Query:   237 GEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKV 296
             G+  G+TDFINP D   K + ++++E+T G GVDY FECTG   ++ EA  +T +G G  
Sbjct:   246 GKLMGVTDFINPKDL-TKPVHQMIREITGG-GVDYSFECTGNVDVLREAFLSTHVGWGST 303

Query:   297 MAIGAANEAK-VPLNFPAIALGRNLKGTIFGGIKTKS 332
             + +G     + +PL+   +  GR + G++FGG K KS
Sbjct:   304 VLVGIYPTPRTLPLHPMELFDGRRITGSVFGGFKPKS 340

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2120663 AT4G22110 [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 137/322 (42%), Positives = 191/322 (59%)

Query:    17 AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSK--GFPLPLFPRVLGHE 74
             A V    GE   +EEI V+PP+A EVR K++  S+CHTDV  SK    PL  FPR+LGHE
Sbjct:    19 AAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARFPRILGHE 78

Query:    75 GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDG-S 132
              VG++ESIG+ V   ++GD+V+P F   C EC +C S  +N C ++   F       G +
Sbjct:    79 AVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSNTRRYGMT 138

Query:   133 SRMSIR-GQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKE 191
             SR     G+ +YH    S+ +EY VVD  ++VK+ P I +  A  LSCG S+G GAAWK 
Sbjct:   139 SRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTGIGAAWKV 198

Query:   192 FKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE 251
               VEK                 + AR++GA KIIG+D NP + + G+ FG TDFIN    
Sbjct:   199 ANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTDFINSTLC 258

Query:   252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNF 311
                 ISE++KEMT G GVDY FEC G+ SL++EA  +T+ G GK + +G  ++   P++ 
Sbjct:   259 GENKISEVIKEMTGG-GVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGI-DKHLTPVSL 316

Query:   312 PAIAL--GRNLKGTIFGGIKTK 331
              +  L  GR++ G++FGG+K K
Sbjct:   317 GSFDLLRGRHVCGSLFGGLKPK 338

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

MGI|MGI:87929 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Mus musculus (taxid:10090)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 135/317 (42%), Positives = 181/317 (57%)

Query:    17 AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPRVLGHEG 75
             A V W  G+P  +EEI+V PPKA EVR K+L  ++CHTD  +  G  P   FP +LGHEG
Sbjct:    10 AAVAWEAGKPLSIEEIEVAPPKAHEVRIKILATAVCHTDAYTLSGADPEGCFPVILGHEG 69

Query:    76 VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSR 134
              G+VES+G+ V +LK GD VIP +I +C EC+ C +   NLC K   T   GLMPDG+SR
Sbjct:    70 AGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSR 129

Query:   135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
              + +G+ ++H    ST +EY VV    V K+DPS  L     L CG S+G+GAA    KV
Sbjct:   130 FTCKGKSVFHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAAVNTAKV 189

Query:   195 EKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
             E                 +   ++ GA++IIGID N  +  K + FG ++ I+P D  +K
Sbjct:   190 EPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGASECISPQDF-SK 248

Query:   255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP-A 313
             SI E++ EMT G GVDY FEC G   ++  ALEA   G G  + +G A   +     P  
Sbjct:   249 SIQEVLVEMTDG-GVDYSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEEISTRPFQ 307

Query:   314 IALGRNLKGTIFGGIKT 330
             +  GR  KGT FGG K+
Sbjct:   308 LVTGRTWKGTAFGGWKS 324

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IMP

GO:0003016 "respiratory system process" evidence=IMP

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISO;IDA

GO:0005504 "fatty acid binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006068 "ethanol catabolic process" evidence=ISO

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IMP

GO:0018467 "formaldehyde dehydrogenase activity" evidence=ISO

GO:0032496 "response to lipopolysaccharide" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045777 "positive regulation of blood pressure" evidence=IMP

GO:0046294 "formaldehyde catabolic process" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IMP

GO:0051775 "response to redox state" evidence=ISO

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=ISO;IMP;IDA

RGD|2292706 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 134/317 (42%), Positives = 180/317 (56%)

Query:    17 AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPRVLGHEG 75
             A V W  G+P  +EEI+V PP+A EVR K++  ++CHTD  +  G  P   FP +LGHEG
Sbjct:    10 AAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEG 69

Query:    76 VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSR 134
              G+VES+G+ V +LK GD VIP +I +C EC+ C +   NLC K   T   GLMPDG+SR
Sbjct:    70 AGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSR 129

Query:   135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
              + +G+ + H    ST +EY VV    V K+DPS  L     L CG S+G+GAA    KV
Sbjct:   130 FTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAAVNTAKV 189

Query:   195 EKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
             E                 +   ++ GA++IIGID N  +  K + FG T+ INP D  +K
Sbjct:   190 EPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGATECINPQDF-SK 248

Query:   255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP-A 313
             SI E++ EMT G GVD+ FEC G   ++  ALEA   G G  + +G A   +     P  
Sbjct:   249 SIQEVLIEMTDG-GVDFSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEEISTRPFQ 307

Query:   314 IALGRNLKGTIFGGIKT 330
             +  GR  KGT FGG K+
Sbjct:   308 LVTGRTWKGTAFGGWKS 324

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA;ISO

GO:0003016 "respiratory system process" evidence=IEA;ISO

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA;ISO;IDA

GO:0005504 "fatty acid binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006068 "ethanol catabolic process" evidence=IDA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0007568 "aging" evidence=IEP

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA;ISO

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA;ISO

GO:0032496 "response to lipopolysaccharide" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0045777 "positive regulation of blood pressure" evidence=IEA;ISO

GO:0046294 "formaldehyde catabolic process" evidence=IEA;ISO

GO:0051409 "response to nitrosative stress" evidence=IEA;ISO

GO:0051775 "response to redox state" evidence=IEA;ISO

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|P12711 Adh5 "Alcohol dehydrogenase class-3" [Rattus norvegicus (taxid:10116)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 134/317 (42%), Positives = 180/317 (56%)

Query:    17 AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPRVLGHEG 75
             A V W  G+P  +EEI+V PP+A EVR K++  ++CHTD  +  G  P   FP +LGHEG
Sbjct:    10 AAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEG 69

Query:    76 VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSR 134
              G+VES+G+ V +LK GD VIP +I +C EC+ C +   NLC K   T   GLMPDG+SR
Sbjct:    70 AGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSR 129

Query:   135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
              + +G+ + H    ST +EY VV    V K+DPS  L     L CG S+G+GAA    KV
Sbjct:   130 FTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAAVNTAKV 189

Query:   195 EKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
             E                 +   ++ GA++IIGID N  +  K + FG T+ INP D  +K
Sbjct:   190 EPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGATECINPQDF-SK 248

Query:   255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP-A 313
             SI E++ EMT G GVD+ FEC G   ++  ALEA   G G  + +G A   +     P  
Sbjct:   249 SIQEVLIEMTDG-GVDFSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEEISTRPFQ 307

Query:   314 IALGRNLKGTIFGGIKT 330
             +  GR  KGT FGG K+
Sbjct:   308 LVTGRTWKGTAFGGWKS 324

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA

GO:0003016 "respiratory system process" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045777 "positive regulation of blood pressure" evidence=IEA

GO:0046294 "formaldehyde catabolic process" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IEA

GO:0051775 "response to redox state" evidence=IEA

TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 131/327 (40%), Positives = 183/327 (55%)

Query:    11 KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL--SSKGFPLPLFP 68
             +I    A V W  G+P  +EE++V PP+  EVR K+L+ S+CHTDV    +KG   PLFP
Sbjct:     6 QIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKG-QTPLFP 64

Query:    69 RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC--LKYPFTFHG 126
             R+ GHE  G+VES+G+ V +L+ GD V+P F GEC EC +C SE +N+C  L+      G
Sbjct:    65 RIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTERGG 124

Query:   127 LMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFG 186
             ++ DG SR SI G+ +YH    ST +EY VV +  V K++P   L     +SCG S+G G
Sbjct:   125 MIHDGESRFSINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLSTGLG 184

Query:   187 AAWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI 246
             A     K +K                 + ARI GA++IIG+D N  R D+ + FG+T+ +
Sbjct:   185 ATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGVTECV 244

Query:   247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK 306
             NP D  +K I +++ EMT G GVD   ECTG    + +A E    G G  + +G  ++  
Sbjct:   245 NPKDH-DKPIQQVIAEMTDG-GVDRSVECTGSVQAMIQAFECVHDGWGVAVLVGVPSKDD 302

Query:   307 VPLNFPAIALG-RNLKGTIFGGIKTKS 332
                  P   L  R LKGT FG  K K+
Sbjct:   303 AFKTHPMNFLNERTLKGTFFGNYKPKT 329

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045333 "cellular respiration" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0001666 "response to hypoxia" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS;IMP

ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 132/323 (40%), Positives = 177/323 (54%)

Query:    11 KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPR 69
             K+    A V W  G+P  +EE++V PPKA EVR K+    +CHTD  +  G  P  LFP 
Sbjct:     6 KVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDAYTLSGSDPEGLFPV 65

Query:    70 VLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLM 128
             +LGHEG G VES+G+ V + K GD VIP ++ +C EC+ C +   NLC K   T   GLM
Sbjct:    66 ILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQGQGLM 125

Query:   129 PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAA 188
             PD +SR + +G++L+H    ST +EY VV    + KVD    L     L CG S+G+GAA
Sbjct:   126 PDNTSRFTCKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGISTGYGAA 185

Query:   189 WKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP 248
                 KVE                 +   +  GA +IIGID NP + +  + FG T+F+NP
Sbjct:   186 INTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFEIAKKFGATEFVNP 245

Query:   249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVP 308
              D  +K I E++ E+T G GVDY FEC G   ++  ALEA   G G  + IG A   +  
Sbjct:   246 KDH-SKPIQEVLVELTDG-GVDYSFECIGNVGIMRAALEACHKGWGTSVIIGVAGAGQEI 303

Query:   309 LNFP-AIALGRNLKGTIFGGIKT 330
                P  +  GR  KGT FGG K+
Sbjct:   304 STRPFQLVTGRTWKGTAFGGWKS 326

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O19053	ADHX_RABIT	1, ., 1, ., 1, ., 2, 8, 4	0.4365	0.9578	0.8502	yes	no
P19854	ADHX_HORSE	1, ., 1, ., 1, ., 2, 8, 4	0.4479	0.9397	0.8342	yes	no
P12711	ADHX_RAT	1, ., 1, ., 1, ., 2, 8, 4	0.4520	0.9578	0.8502	yes	no
P11766	ADHX_HUMAN	1, ., 1, ., 1, ., 2, 8, 4	0.4511	0.9397	0.8342	yes	no
Q9SK87	ADHL2_ARATH	1, ., 1, ., 1, ., 1	0.4646	0.9337	0.8031	yes	no
Q17335	ADHX_CAEEL	1, ., 1, ., 1, ., 2, 8, 4	0.4325	0.9608	0.8307	yes	no
P46415	ADHX_DROME	1, ., 1, ., 1, ., 2, 8, 4	0.4386	0.9668	0.8469	yes	no
Q3ZC42	ADHX_BOVIN	1, ., 1, ., 1, ., 2, 8, 4	0.4396	0.9578	0.8502	yes	no
P32771	FADH_YEAST	1, ., 1, ., 1, ., -	0.4534	0.9487	0.8160	yes	no
P28474	ADHX_MOUSE	1, ., 1, ., 1, ., 2, 8, 4	0.4551	0.9578	0.8502	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVIII1194 hypothetical protein (377 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	332
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-159
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	1e-129
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-111
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-104
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	6e-99
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	2e-95
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	7e-95
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	2e-94
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	5e-93
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	6e-88
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	5e-84
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	1e-65
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	4e-62
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	2e-47
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	2e-45
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	5e-45
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	2e-43
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	3e-42
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	1e-41
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	4e-38
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	4e-38
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	8e-38
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	2e-37
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	2e-37
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	3e-36
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	4e-36
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	1e-34
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	1e-34
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	3e-34
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	6e-34
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	2e-32
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	4e-32
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	3e-31
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	1e-30
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	2e-30
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	4e-30
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	2e-29
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	4e-29
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	3e-28
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	3e-28
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	2e-26
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	4e-26
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	9e-26
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	2e-25
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-24
cd05281	341	cd05281, TDH, Threonine dehydrogenase	3e-24
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	7e-24
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	1e-22
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	1e-22
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	2e-22
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	3e-22
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	5e-22
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	1e-21
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	3e-20
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	4e-20
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	1e-19
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	2e-19
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	3e-19
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	7e-19
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	8e-19
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	9e-19
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	7e-17
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	2e-16
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	4e-16
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	8e-16
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	1e-13
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-13
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	2e-13
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	3e-13
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	5e-13
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	7e-13
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	1e-12
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	3e-12
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	7e-11
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	1e-10
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	1e-10
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	2e-10
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	1e-09
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	8e-09
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	1e-08
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	6e-08
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	2e-07
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	3e-07
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	6e-07
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	1e-06
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	3e-06
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	5e-06
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	3e-05
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	8e-05
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	1e-04
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	2e-04
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	9e-04
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	0.001
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	0.002
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	0.003

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  447 bits (1153), Expect = e-159
 Identities = 170/316 (53%), Positives = 219/316 (69%), Gaps = 2/316 (0%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A V W  G+P  +EEI+V PPKA EVR KML  S+CHTD+L+ +GF   LFP +LGHEG 
Sbjct: 5   AAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKATLFPVILGHEGA 64

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMS 136
           G+VES+G+ V  LK GD VIP FIG+C EC NC S   NLC KY     GLMPDG+SR +
Sbjct: 65  GIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFT 124

Query: 137 IRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEK 196
            +G+K+YH    ST ++Y VVD NYV K+DP+  L     L CG+S+G+GAAW   KVE 
Sbjct: 125 CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEP 184

Query: 197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSI 256
           GS+VAVFGLGAVGL  +  A+I GA++IIG+D N  + +K + FG TDFINP D   K +
Sbjct: 185 GSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSD-KPV 243

Query: 257 SELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL 316
           SE+++EMT G GVDY FECTG A L++EALE+TKLG G  + +G    A++ +    + L
Sbjct: 244 SEVIREMTGG-GVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL 302

Query: 317 GRNLKGTIFGGIKTKS 332
           GR  KG+ FGG K++S
Sbjct: 303 GRTWKGSFFGGFKSRS 318

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  372 bits (956), Expect = e-129
 Identities = 152/320 (47%), Positives = 205/320 (64%), Gaps = 6/320 (1%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEG 75
           A V W  G+P  +EE++V PP+A EVR K+L+ S+CHTDV   +     PLFPR+LGHE 
Sbjct: 5   AAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEA 64

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMP-DGSS 133
            G+VES+G+ V +LK GD V+P F GEC+EC +C SE +N+C      T  G+M  DG S
Sbjct: 65  AGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKS 124

Query: 134 RMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFK 193
           R SI G+ +YH    ST +EY VV    V K++P   L     LSCG S+G GAAW   K
Sbjct: 125 RFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAK 184

Query: 194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN 253
           V+KGS+VA+FGLGAVGL V + ARI+GA++IIG+D NP + ++ + FG+T+F+NP D  +
Sbjct: 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDH-D 243

Query: 254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEAKVPLNFP 312
           K + E++ EMT G GVDY FECTG    +  A E    G G  + +G    +A    +  
Sbjct: 244 KPVQEVIAEMTGG-GVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPM 302

Query: 313 AIALGRNLKGTIFGGIKTKS 332
            +  GR LKGT+FGG K K+
Sbjct: 303 NLLNGRTLKGTLFGGYKPKT 322

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  326 bits (839), Expect = e-111
 Identities = 149/319 (46%), Positives = 192/319 (60%), Gaps = 5/319 (1%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPRVLGHEG 75
           A V W  G+P  +EE++V PPKA EVR K+L   +CHTD  +  G  P  LFP +LGHEG
Sbjct: 5   AAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEG 64

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-PFTFHGLMPDGSSR 134
            G+VES+G+ V  +K GD VIP +  EC EC+ C S   NLC K       GLMPDG+SR
Sbjct: 65  AGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSR 124

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
            S +G+ +YH    ST +EY VV    V K++P   L     L CG ++G+GA     KV
Sbjct: 125 FSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKV 184

Query: 195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
           E GS+VAVFGLGAVGL V+  A+  GA++IIGID NP + +  + FG TD +NP D   K
Sbjct: 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHD-K 243

Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP-A 313
            I +++ EMT G GVDY FEC G   ++  ALEA   G G  + IG A   +     P  
Sbjct: 244 PIQQVLVEMTDG-GVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQ 302

Query: 314 IALGRNLKGTIFGGIKTKS 332
           +  GR  KGT FGG K++S
Sbjct: 303 LVTGRVWKGTAFGGWKSRS 321

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  310 bits (797), Expect = e-104
 Identities = 156/324 (48%), Positives = 208/324 (64%), Gaps = 11/324 (3%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLGHE 74
           A V WG GEP  +EEI+V+PP+  EVR K+LY SICHTD+ + KG       +PR+LGHE
Sbjct: 13  AAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHE 72

Query: 75  GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY---PFTFHGLMPDG 131
             G+VES+G+ V++LK GD VIP F GEC +C  C  +  NLC  Y   PF    ++ DG
Sbjct: 73  AAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFK-SVMVNDG 131

Query: 132 SSRMSIR--GQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
            +R S +  GQ +YH    ST TEY V+D+  VVK+DP+  L     LSCG S+G GAAW
Sbjct: 132 KTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAW 191

Query: 190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
               V+ GSSVA+FGLGAVGL V + AR +GA+KIIG+D NP + +KG+  G+TDFINP 
Sbjct: 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPK 251

Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D  +K + E ++EMT G GVDY FEC G   ++ EA  +T  G G  + +G     K +P
Sbjct: 252 DS-DKPVHERIREMTGG-GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLP 309

Query: 309 LNFPAIALGRNLKGTIFGGIKTKS 332
           L+   +  GR++ G++FG  K KS
Sbjct: 310 LHPMELFDGRSITGSVFGDFKGKS 333

Length = 381

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  296 bits (759), Expect = 6e-99
 Identities = 127/315 (40%), Positives = 176/315 (55%), Gaps = 6/315 (1%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A V    G+P ++EE+ ++PP+A EV  ++    +CHTD  +  G     FP VLGHEG 
Sbjct: 5   AAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEGFPAVLGHEGA 64

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLK-YPFTFHGLMPDGSSRM 135
           G+VE++G+ V  +K GD VI  F  EC +C+ C S   NLC         G MPDG++R+
Sbjct: 65  GIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRL 124

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
           S  G  +YH   CST  EY VV    +VK+DP   L  A  L CG ++G GA     KVE
Sbjct: 125 SGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVE 184

Query: 196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS 255
            G +VAVFGLG VGL  +  A+  GA +II +D NP + +  + FG T F+NP +  +  
Sbjct: 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDD-- 242

Query: 256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VPLNFPAI 314
           + E + E+T   G DY FEC G   ++ +ALEAT  G G  + IG A   + +      +
Sbjct: 243 VVEAIVELT-DGGADYAFECVGNVEVMRQALEATHRG-GTSVIIGVAGAGQEISTRPFQL 300

Query: 315 ALGRNLKGTIFGGIK 329
             GR  KG+ FGG +
Sbjct: 301 VTGRVWKGSAFGGAR 315

Length = 366

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  287 bits (737), Expect = 2e-95
 Identities = 128/317 (40%), Positives = 181/317 (57%), Gaps = 4/317 (1%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A V W   +P+ +EEI+V PPKA EVR K++   IC +D     G  +  FP +LGHE  
Sbjct: 10  AAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLVTPFPVILGHEAA 69

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYP-FTFHGLMPDGSSRM 135
           G+VES+G+ V  +K GD VIP F+ +C +C  C +  +NLCLK       GLM DG+SR 
Sbjct: 70  GIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRF 129

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
           + +G+ ++H    ST +EY VVD   V K+D +  L     + CG+S+G+GAA    KV 
Sbjct: 130 TCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVT 189

Query: 196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS 255
            GS+ AVFGLG VGL  +   +  GA++II +D N  +  K +  G T+ INP D   K 
Sbjct: 190 PGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDY-KKP 248

Query: 256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAA-NEAKVPLNFPAI 314
           I E++ EMT G GVD+ FE  G    +  AL +   G G  + +G   +   + +N   +
Sbjct: 249 IQEVLTEMTDG-GVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPMLL 307

Query: 315 ALGRNLKGTIFGGIKTK 331
             GR  KG +FGG K+K
Sbjct: 308 LTGRTWKGAVFGGWKSK 324

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  285 bits (732), Expect = 7e-95
 Identities = 137/317 (43%), Positives = 187/317 (58%), Gaps = 4/317 (1%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A V W +G+P  +EEI+V PPKA EVR K++   +CHTD+    G      P +LGHEG 
Sbjct: 3   AAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPTPLPVILGHEGA 62

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-PFTFHGLMPDGSSRM 135
           G+VESIG  V  LK GD VIP F  +C +C+ C +   NLC K       GLM DG+SR 
Sbjct: 63  GIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRF 122

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
           + +G+ ++H    ST  EY VV    + K+DP   L     + CG+S+G+GAA    KV 
Sbjct: 123 TCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVT 182

Query: 196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS 255
            GS+ AVFGLG VGL V+   +  GA++II +D N  + +K +  G T+ INP D  +K 
Sbjct: 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRD-QDKP 241

Query: 256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VPLNFPAI 314
           I E++ EMT G GVDY FE  G A  + +AL+AT+LG G  + +G         L+   +
Sbjct: 242 IVEVLTEMTDG-GVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL 300

Query: 315 ALGRNLKGTIFGGIKTK 331
             GR +KGT+FGG K+K
Sbjct: 301 LTGRTIKGTVFGGWKSK 317

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  284 bits (729), Expect = 2e-94
 Identities = 111/315 (35%), Positives = 166/315 (52%), Gaps = 10/315 (3%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEG 75
           A V    G+P ++EE++++ P   EV  ++  A +CH+D+    G  P PL P VLGHEG
Sbjct: 3   AAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPAPL-PAVLGHEG 61

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRM 135
            G+VE +G  V  +K GD V+ ++I  C  C  C+    NLC        G +PDG+ R 
Sbjct: 62  AGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRF 121

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
           +  G+ +  +    T  EY VV    VVK+D  I L  A  L CG ++G GA     +V 
Sbjct: 122 TADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVR 181

Query: 196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS 255
            G +VAV G G VGL  +  ARI GA++II +D  P + +    FG T  +N  ++    
Sbjct: 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASED---D 238

Query: 256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIA 315
             E V+++T G G DY FE  G A+ I +AL  T+ G G  + +G        ++ PA+ 
Sbjct: 239 AVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMG-PPGETVSLPALE 296

Query: 316 L---GRNLKGTIFGG 327
           L    + L+G+++G 
Sbjct: 297 LFLSEKRLQGSLYGS 311

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  281 bits (720), Expect = 5e-93
 Identities = 136/318 (42%), Positives = 194/318 (61%), Gaps = 6/318 (1%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A V WG GE   +EE++V PP+  E+R K++  S+C +D+  S      LFPR+ GHE  
Sbjct: 15  AAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDL--SAWESQALFPRIFGHEAS 72

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM-PDGSSRM 135
           G+VESIG+ V E ++GD V+  F GEC  C +C S  +N+C        G+M  D  +R 
Sbjct: 73  GIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRF 132

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
           SI+G+ +YH    S+ +EY VV +   VKVDP   L     LSCG ++G GAAW    V 
Sbjct: 133 SIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVS 192

Query: 196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS 255
           KGSSV +FGLG VGL V   A+++GA++IIG+D NP + +K + FG+TDFINP+D  ++ 
Sbjct: 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPND-LSEP 251

Query: 256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN-EAKVPLNFPAI 314
           I +++K MT G G DY FEC G   + + AL++   G G  + +G    + +V  ++   
Sbjct: 252 IQQVIKRMTGG-GADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLF 310

Query: 315 ALGRNLKGTIFGGIKTKS 332
             GR LKG++FGG K KS
Sbjct: 311 LSGRTLKGSLFGGWKPKS 328

Length = 378

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  268 bits (686), Expect = 6e-88
 Identities = 135/319 (42%), Positives = 191/319 (59%), Gaps = 5/319 (1%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPRVLGHEG 75
           A V W  G+P K+EE+ VE P+  EV  +++   +CHTD  +  G  P  +FP +LGHEG
Sbjct: 4   AAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEG 63

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSR 134
            G+VE++G+ V  +K GD VIP +  EC EC+ C S   NLC+    T   GLMPDG+SR
Sbjct: 64  AGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSR 123

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
            S  GQ +YH   CST +EY VV    + K++P+  L     L CG ++G GA     KV
Sbjct: 124 FSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKV 183

Query: 195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
           E+G +VAVFGLG +GL V+  AR+  A++II ID NP + +  +  G TD +NP+D  +K
Sbjct: 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDY-DK 242

Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP-A 313
            I E++ E+T G GVDY FEC G  +++  ALE    G G+ + IG A   +     P  
Sbjct: 243 PIQEVIVEITDG-GVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQ 301

Query: 314 IALGRNLKGTIFGGIKTKS 332
           +  GR  +G+ FGG+K ++
Sbjct: 302 LVTGRVWRGSAFGGVKGRT 320

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  257 bits (660), Expect = 5e-84
 Identities = 115/315 (36%), Positives = 165/315 (52%), Gaps = 11/315 (3%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A V    G P+ +E+++++ P+  EV  +++   ICHTD++   G      P VLGHEG 
Sbjct: 5   AAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLPTPLPAVLGHEGA 64

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-PFTFHGLMPDGSSRM 135
           G+VE++G  V  LK GD V+ +F   C EC NC S     C  + P  F G  PDGS+ +
Sbjct: 65  GVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPL 123

Query: 136 SIRGQK--LYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFK 193
           S+        H F  S+   Y VV    VVKVD  + L L   L CG  +G GA     K
Sbjct: 124 SLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLK 183

Query: 194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN 253
              GSS+AVFG GAVGL  +  A+I G   II +D    R +  +  G T  INP +E  
Sbjct: 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEE-- 241

Query: 254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGA-ANEAKVPLN-F 311
             +   ++E+T G GVDY  + TGV ++I +A++A     G +  +GA    A+V L+  
Sbjct: 242 -DLVAAIREIT-GGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEVTLDVN 298

Query: 312 PAIALGRNLKGTIFG 326
             +  G+ ++G I G
Sbjct: 299 DLLVSGKTIRGVIEG 313

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  210 bits (537), Expect = 1e-65
 Identities = 112/317 (35%), Positives = 168/317 (52%), Gaps = 10/317 (3%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDV-LSSKGFPLPLFPRVLGHEG 75
           A V WG G+PW+VEEI+++ PKA EV  K++ + +CH+D  L +   P+P +P + GHEG
Sbjct: 4   AAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSDEHLVTGDLPMPRYPILGGHEG 63

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMP-DGSSR 134
            G+V  +G  V  +K GD V+ +FI  C  C  C++ + NLC        G    DG+ R
Sbjct: 64  AGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISDGTYR 123

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
               GQ +  +    T +EY VV    VVK+D  I L  A  + CG  +G+G+A     V
Sbjct: 124 FHADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNIADV 183

Query: 195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
             G +V V G+G VG+  +  A + GA K+I +D    ++++   FG T      +E   
Sbjct: 184 RPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATHAFASMEEA-- 241

Query: 255 SISELVKEMTHGTGVDYGFECTGVA--SLISEALEAT-KLGKGKVMAIGAANEAKVPLNF 311
              +LV+E+T+G G D      G      I+EAL AT K G+  V  +G   +  V +N 
Sbjct: 242 --VQLVRELTNGQGADKTIITVGEVDGEHIAEALSATRKGGRVVVTGLGPMADVDVKVNL 299

Query: 312 PAIAL-GRNLKGTIFGG 327
             + L  + L+GT+FGG
Sbjct: 300 FELTLLQKELQGTLFGG 316

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  201 bits (514), Expect = 4e-62
 Identities = 103/314 (32%), Positives = 151/314 (48%), Gaps = 16/314 (5%)

Query: 21  WGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLS----SKGFPLPLFPRVLGHEGV 76
           + +  P  +EE++++PP   EV  K+  A +CH+D LS     +  PLP+    LGHE  
Sbjct: 15  YADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSD-LSVINGDRPRPLPM---ALGHEAA 70

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLK-YPFTFHGLMPDGSSRM 135
           G+V  +G+ V +L+ GD V+  F+  C  C  C      LC         G +  G  R+
Sbjct: 71  GVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRL 130

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
            +RG ++ H    S   EY VV    VVK+D  + L +A    C   +G GA      V 
Sbjct: 131 RLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVR 190

Query: 196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS 255
            G SVAV GLG VGL  +  A   GA++++ +D N  +       G T  +N  D    +
Sbjct: 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDP---N 247

Query: 256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN-EAKVPLN-FPA 313
             E V+E+T G GVDY FE  G    +  A E T+ G G  +  G  + EA++ +     
Sbjct: 248 AVEQVRELTGG-GVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARLSVPALSL 305

Query: 314 IALGRNLKGTIFGG 327
           +A  R LKG+  G 
Sbjct: 306 VAEERTLKGSYMGS 319

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  160 bits (407), Expect = 2e-47
 Identities = 68/290 (23%), Positives = 115/290 (39%), Gaps = 33/290 (11%)

Query: 41  EVRFKMLYASICHTDVLSSKGFPL--PLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPT 98
           EV  ++  A +C TD+   +G     P  P +LGHEG G+V  +G  V  +K GD V+  
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 99  FIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVD 158
               C  CE C                G   DG                     EY+VV 
Sbjct: 61  PNLGCGTCELCRELCPGGG------ILGEGLDG------------------GFAEYVVVP 96

Query: 159 ANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARI 218
           A+ +V +   + L  A  L    ++ + A  +   ++ G +V V G G VGL     A+ 
Sbjct: 97  ADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA 156

Query: 219 QGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGV 278
            G A++I  D++  + +  +  G    I+  +E      E    +T G G D   +  G 
Sbjct: 157 AG-ARVIVTDRSDEKLELAKELGADHVIDYKEED----LEEELRLTGGGGADVVIDAVGG 211

Query: 279 ASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG 327
              +++AL   + G G+++ +G  +      +   +      + G+  G 
Sbjct: 212 PETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGT 260

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  156 bits (398), Expect = 2e-45
 Identities = 95/318 (29%), Positives = 143/318 (44%), Gaps = 38/318 (11%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEG 75
           A V    G+P ++EE+ V  P   EV  K+    +CHTD+  +KG +P+P  P + GHE 
Sbjct: 6   AAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEI 65

Query: 76  VGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSR 134
           VG V  +G+ V  LK GD V +   +  C ECE C S   NLC     T  G   DG   
Sbjct: 66  VGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKIT--GYTTDGG-- 121

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
                             EY+VV A YVVK+   +DL+ A  L C   + + A  K+  V
Sbjct: 122 ----------------YAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL-KKANV 164

Query: 195 EKGSSVAVFGLGAVG-LGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN 253
           + G  VAV G G +G + V   A+  G A++I I ++  + +  +  G    IN  D   
Sbjct: 165 KPGKWVAVVGAGGLGHMAVQ-YAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDS-- 220

Query: 254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGA-ANEAKVPLNFP 312
               E VKE+      D   +  G  + +  +L+A + G G ++ +G         L   
Sbjct: 221 -DALEAVKEI-----ADAIIDTVG-PATLEPSLKALRRG-GTLVLVGLPGGGPIPLLPAF 272

Query: 313 AIAL-GRNLKGTIFGGIK 329
            + L   ++ G++ G   
Sbjct: 273 LLILKEISIVGSLVGTRA 290

Length = 339

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  157 bits (398), Expect = 5e-45
 Identities = 92/306 (30%), Positives = 143/306 (46%), Gaps = 20/306 (6%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG---FPLPLFPRVLGH 73
           A V  G   P  +EEI V  PK  E+  ++    +CH+D+   KG   FP P    VLGH
Sbjct: 3   AAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPFPPPF---VLGH 59

Query: 74  EGVGMVESIGDEVK---ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFH---GL 127
           E  G V  +G  V+    L  GD V+ +FI  C +C  C     NLC +  F ++   G 
Sbjct: 60  EISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLC-EDFFAYNRLKGT 118

Query: 128 MPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGA 187
           + DG++R+        ++++   + EY VV A  +  +  S+D + +  L C   + +GA
Sbjct: 119 LYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGA 178

Query: 188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
                 V  G +VAV G+G VG   +  A+  GA+ II +D    +  K +  G T  +N
Sbjct: 179 LKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVN 238

Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN---E 304
              E        ++E+T G GVD   E  G       AL+  + G G+ + +G A     
Sbjct: 239 AAKE---DAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGAT 294

Query: 305 AKVPLN 310
           A++P+ 
Sbjct: 295 AEIPIT 300

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  152 bits (386), Expect = 2e-43
 Identities = 81/314 (25%), Positives = 128/314 (40%), Gaps = 47/314 (14%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTD--------VLSSKGFPLPL----FPRVLGHEG 75
           +VEE+   P K  EV+ K+ +  IC +D        +         L     P  LGHE 
Sbjct: 13  RVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEF 72

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM-PDGSSR 134
            G+V  +G  V   K GD V+     +C  C  C   + NLC      F GL    G   
Sbjct: 73  SGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSL--GFIGLGGGGGG-- 128

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---LSCGYSSGFGAAWKE 191
                             EY+VV A +V K+  ++ L  A     L+  +      A + 
Sbjct: 129 ----------------FAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWH-----AVRR 167

Query: 192 FKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE 251
              + G +  V G G +GL  +   +  GA+KII  + +  R++  E  G T  ++P + 
Sbjct: 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEV 227

Query: 252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNF 311
               +   V+++T G GVD  F+C GV + +  A++A +          A  E  +  N 
Sbjct: 228 ---DVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALR--PRGTAVNVAIWEKPISFNP 282

Query: 312 PAIALG-RNLKGTI 324
             + L  + L G+I
Sbjct: 283 NDLVLKEKTLTGSI 296

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  149 bits (378), Expect = 3e-42
 Identities = 79/315 (25%), Positives = 132/315 (41%), Gaps = 26/315 (8%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDV--LSSKGFPLPLFPRVLGHE 74
           A V +  G   ++EE     P   +V  ++    IC +D+         +P    +LGHE
Sbjct: 3   AAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHE 62

Query: 75  GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSR 134
            VG V  +G  V+  K GD V+      C  C  C +   NLC    F  +  +  G   
Sbjct: 63  FVGEVVEVGV-VRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGG--- 118

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSL-AGFLSCGYSSGFGAAWKEFK 193
             I G             EY+ V A++ +   P   +   A  L+   ++ +    +   
Sbjct: 119 --IDG----------GFAEYVRVPADFNLAKLPD-GIDEEAAALTEPLATAYHGHAERAA 165

Query: 194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN 253
           V  G +V V G G +GL  +  A++ GA+ +I +D++P R +  +  G  D +    E +
Sbjct: 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDD 225

Query: 254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPA 313
                 + E+T G G D   E  G    + +ALEA + G G V+ +G      +PL    
Sbjct: 226 --AGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGVYGGEDIPLPAGL 282

Query: 314 IALGRNLKGTIFGGI 328
           + + + L  T+ G +
Sbjct: 283 V-VSKEL--TLRGSL 294

Length = 350

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  147 bits (373), Expect = 1e-41
 Identities = 94/315 (29%), Positives = 145/315 (46%), Gaps = 19/315 (6%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
            V+   +G P ++E I V  P   EV   +    +CHTD+   +G     FP +LGHE  
Sbjct: 4   GVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGINDEFPFLLGHEAA 63

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMS 136
           G+VE++G+ V ++  GD V+  +   C +C  C          Y F  H    + + +M+
Sbjct: 64  GVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRP----WYCFDTH----NATQKMT 115

Query: 137 IR-GQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
           +  G +L          E  +V A    KVDP+ D + AG L CG  +G GAA     V+
Sbjct: 116 LTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVK 175

Query: 196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP-DDEPNK 254
           +G SVAV G G VG   +  A + GA+KII +D +  + +    FG T  +N    +P  
Sbjct: 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDP-- 233

Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI 314
              E ++ +T G G D   +  G      +A  A  L  G V+ +G      + L  P +
Sbjct: 234 --VEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPT-PDMTLELPLL 289

Query: 315 AL---GRNLKGTIFG 326
            +   G  LK + +G
Sbjct: 290 DVFGRGGALKSSWYG 304

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  138 bits (350), Expect = 4e-38
 Identities = 85/319 (26%), Positives = 137/319 (42%), Gaps = 37/319 (11%)

Query: 16  AAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLGH 73
           AAVV     +P++V+++ V  P   EV  K+  + +CHTD+ ++ G     P  P + GH
Sbjct: 3   AAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGH 62

Query: 74  EGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
           EG G+V ++G  V  LK GD V +      C +CE C +    LC     +  G   DG 
Sbjct: 63  EGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNS--GYTVDG- 119

Query: 133 SRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
                            T  EY + DA YV  +   +    A  L C   + + A  K+ 
Sbjct: 120 -----------------TFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKAL-KKA 161

Query: 193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAA----KIIGIDKNPCRKDKGEAFGMTDFINP 248
            ++ G  V + G G  GLG +    +Q A     ++I ID    + +  +  G   F++ 
Sbjct: 162 GLKPGDWVVISGAGG-GLGHLG---VQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDF 217

Query: 249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVP 308
                    E VKE+T G G          A+   +AL+  + G G ++ +G      +P
Sbjct: 218 KKS---DDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPPGGFIP 273

Query: 309 LNFPAIAL-GRNLKGTIFG 326
           L+   + L G  + G++ G
Sbjct: 274 LDPFDLVLRGITIVGSLVG 292

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  138 bits (351), Expect = 4e-38
 Identities = 81/307 (26%), Positives = 133/307 (43%), Gaps = 29/307 (9%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEG 75
           A V  G G+P ++ E+ +   +   V  ++  A +C +DV +  G  P    P +LGHEG
Sbjct: 3   AAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEG 62

Query: 76  VGMVESIGDEV------KELKEGDIVIPTFIGECRECENCTSEMANLCL---KYPFTFHG 126
           VG V ++G  V      + LK GD V  +    C  C  C       C    KY      
Sbjct: 63  VGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKY------ 116

Query: 127 LMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN-YVVKVDPSIDLSLAGFLSCGYSSGF 185
               G            H+       E++ +     +V+V  ++   +A   +C  ++  
Sbjct: 117 ----GHEASCDDP----HLSGG--YAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVL 166

Query: 186 GAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF 245
            A  +   V  G +V V G G +GL  +  A++ GA ++I ID +P R +    FG    
Sbjct: 167 AALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADAT 226

Query: 246 INPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANE 304
           I+ D+ P+     +V+++T G G D   E +G  + + E LE  + G G  + +G  A  
Sbjct: 227 IDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPA 285

Query: 305 AKVPLNF 311
             VPL+ 
Sbjct: 286 GTVPLDP 292

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  137 bits (347), Expect = 8e-38
 Identities = 78/278 (28%), Positives = 113/278 (40%), Gaps = 38/278 (13%)

Query: 29  VEEIQVEPPKATEVRFKMLYASICHTDVLSSK-GFPLPLFPRVLGHEGVGMVESIGDEVK 87
           +EE+ V  P   EV  K+    IC TDV   + G      PR+LGHE  G +  +GD V 
Sbjct: 14  LEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVT 73

Query: 88  ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFT 147
             K GD V       C EC  C     N+C  Y    +    DG                
Sbjct: 74  GFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLY--DGG--------------- 116

Query: 148 CSTMTEYMVVDANYVV-----KVDPSIDLSLAGF---LSCGYSSGFGAAWKEFKVEKGSS 199
                EY+ V A  V      K+  ++    A     L+C        A ++  ++ G +
Sbjct: 117 ---FAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCI-----NAQRKAGIKPGDT 168

Query: 200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISEL 259
           V V G G +GL     A+  GA K+I  D N  R +  +  G    I+  +E    + E 
Sbjct: 169 VLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEE---DLVEK 225

Query: 260 VKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVM 297
           V+E+T G G D     TG     ++ALE  + G G+++
Sbjct: 226 VRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRIL 262

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  136 bits (344), Expect = 2e-37
 Identities = 71/264 (26%), Positives = 107/264 (40%), Gaps = 26/264 (9%)

Query: 29  VEEIQVEPPKATEVRFKMLYASICHTDV-LSSKGFPLPLFPRVL-GHEGVGMVESIGDEV 86
           + E  V  P   EV  ++  + +C +D+     G   P +  V+ GHE  G+V ++G  V
Sbjct: 14  LREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGV 73

Query: 87  KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIF 146
              + GD V+      C  C NC      LC      +      G               
Sbjct: 74  THFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGG--------------- 118

Query: 147 TCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLG 206
                 EYM+V    ++ +   +  +    L CG  + + A  +   V    +V V G G
Sbjct: 119 ----HAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAG 173

Query: 207 AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHG 266
            VGLG +  AR  GA  +IG+D +P R +  +A G    IN   +  + I EL    T G
Sbjct: 174 PVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIREL----TSG 229

Query: 267 TGVDYGFECTGVASLISEALEATK 290
            G D   EC+G  +    ALEA +
Sbjct: 230 AGADVAIECSGNTAARRLALEAVR 253

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  136 bits (344), Expect = 2e-37
 Identities = 94/310 (30%), Positives = 132/310 (42%), Gaps = 33/310 (10%)

Query: 25  EPWKVEEIQVEPPK---ATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVE 80
            P K+   +V  PK     +   ++   SIC +D+   +G  P      +LGHE VG V 
Sbjct: 8   GPGKIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVV 67

Query: 81  SIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFH-GLMPDGSSRMSIRG 139
            +G +VK LK GD V    I  C  C  C       C    + +  G   DG        
Sbjct: 68  EVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDG-------- 119

Query: 140 QKLYHIFTCSTMTEYMVV-DANY-VVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKG 197
                        EY+ V  A+  + K+   +    A  LS    +GF  A +   ++ G
Sbjct: 120 ----------GQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPG 168

Query: 198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSIS 257
           S+VAV G G VGL  +  AR+ GAA+II +D NP R D  +  G TD INP +     I 
Sbjct: 169 STVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGD---IV 225

Query: 258 ELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALG 317
           E + E+T G GVD   E  G      +A++  + G G +  +G       PL       G
Sbjct: 226 EQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVG-VYGKPDPLPLLGEWFG 283

Query: 318 RNLKGTIFGG 327
           +NL  T   G
Sbjct: 284 KNL--TFKTG 291

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  133 bits (336), Expect = 3e-36
 Identities = 82/315 (26%), Positives = 133/315 (42%), Gaps = 45/315 (14%)

Query: 25  EPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIG 83
           EP+  E   + P    +V  K+ Y  +CH+D+ + +  +    +P V GHE VG+V ++G
Sbjct: 13  EPFTFERRPLGP---DDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVG 69

Query: 84  DEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKL 142
            +V + K GD V +   +  C  CE C S     C K   T++G  PDG+          
Sbjct: 70  SKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGT---------- 119

Query: 143 YHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCG----YSSGFGAAWKEFKVEKGS 198
               T     +++VVD  +V K+   +D + A  L C     YS       K   V  G 
Sbjct: 120 ---ITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYS-----PLKRNGVGPGK 171

Query: 199 SVAVFGLGAVGLGVMDRARIQGA----AKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
            V V G+G  GLG +  A ++ A    A++    ++P +K+     G  +FI   D    
Sbjct: 172 RVGVVGIG--GLGHL--A-VKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPE-- 224

Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI 314
                         +D   +    +  +   L   K G G ++ +GA  E      FP I
Sbjct: 225 ------AMKKAAGSLDLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEEPLPVPPFPLI 277

Query: 315 ALGRNLKGTIFGGIK 329
              +++ G++ GG K
Sbjct: 278 FGRKSVAGSLIGGRK 292

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  132 bits (335), Expect = 4e-36
 Identities = 77/279 (27%), Positives = 112/279 (40%), Gaps = 39/279 (13%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLS-SKGFPLPLFPRVLGHEGVGMVESIGDEV 86
           + E+I    P   EV  K+    IC +D+            P VLGHE  G VE +G  V
Sbjct: 13  RYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAYH-PPLVLGHEFSGTVEEVGSGV 71

Query: 87  KELKEGDIV--IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYH 144
            +L  GD V   P     C +CE C     +LC  Y   + G   DG+            
Sbjct: 72  DDLAVGDRVAVNPLL--PCGKCEYCKKGEYSLCSNY--DYIGSRRDGA------------ 115

Query: 145 IFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---LSCGYSSGFGAAWKEFKVEKGSSVA 201
                   EY+ V A  ++K+   +D   A      +        A      +  G +V 
Sbjct: 116 ------FAEYVSVPARNLIKIPDHVDYEEAAMIEPAAVA----LHAVRL-AGITLGDTVV 164

Query: 202 VFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVK 261
           V G G +GL  +   +I GA ++I +D +  +       G  D INP +E      E V+
Sbjct: 165 VIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEED----VEKVR 220

Query: 262 EMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG 300
           E+T G G D   E  G  + I +AL   +   GKV+ +G
Sbjct: 221 ELTEGRGADLVIEAAGSPATIEQALALAR-PGGKVVLVG 258

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  128 bits (324), Expect = 1e-34
 Identities = 85/309 (27%), Positives = 127/309 (41%), Gaps = 31/309 (10%)

Query: 22  GEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDV--LSSKGFPLPLFPRVLGHEGVGMV 79
           G      +EE+ V  P   EV  K+  A +CH+D+  L      L   P  LGHE  G V
Sbjct: 9   GSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTV 68

Query: 80  ESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRG 139
             +G  V   K GD V    +  C  C  C     NLCL       GL  DG        
Sbjct: 69  VEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQ--GMPGLGIDG-------- 118

Query: 140 QKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSS 199
                        EY+VV A  +V V   +  + A   +    + + A  +  +V+ G +
Sbjct: 119 ----------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGET 168

Query: 200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISEL 259
           V V GLG +GL  +  A+  G A +I +D    + +  +  G  + +N  D+  K     
Sbjct: 169 VLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDK--- 224

Query: 260 VKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEAKVPLNFPAIALGR 318
            K    G G D  F+  G      +A +A K G G+++ +G   ++  V L+   IA   
Sbjct: 225 -KAAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRDKLTVDLSD-LIAREL 281

Query: 319 NLKGTIFGG 327
            + G+ FGG
Sbjct: 282 RIIGS-FGG 289

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  128 bits (324), Expect = 1e-34
 Identities = 88/299 (29%), Positives = 131/299 (43%), Gaps = 37/299 (12%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEG 75
           A+VC   G   +V +I    P A EV  ++    IC +D+    G  P   +PR+LGHE 
Sbjct: 3   ALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHEL 61

Query: 76  VGMVESIGDEVKELKEGDIV--IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSS 133
            G V  +G+ V  LK GD V   P     C EC  C     N C        G+  DG  
Sbjct: 62  SGEVVEVGEGVAGLKVGDRVVVDPYI--SCGECYACRKGRPNCCENLQVL--GVHRDG-- 115

Query: 134 RMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFK 193
                              EY+VV A+ ++  +  + L  A  +    + G  A  +   
Sbjct: 116 ----------------GFAEYIVVPADALLVPE-GLSLDQAALVEP-LAIGAHAVRRA-G 156

Query: 194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN 253
           V  G +V V G G +GLGV+  A+ +G A++I +D +  R +     G  D IN  DE  
Sbjct: 157 VTAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFARELGADDTINVGDEDV 215

Query: 254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP 312
                 ++E+T G G D   + TG  + + EA+E    G G+V+ +G +     P+ FP
Sbjct: 216 A---ARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSKG---PVTFP 267

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  127 bits (322), Expect = 3e-34
 Identities = 87/311 (27%), Positives = 130/311 (41%), Gaps = 52/311 (16%)

Query: 27  WKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEV 86
            +VEE+ V  P   EV  K+    IC TD+   +G      P V GHE  G+V ++G +V
Sbjct: 12  LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAAPPLVPGHEFAGVVVAVGSKV 71

Query: 87  KELKEGDIV-----IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQK 141
              K GD V     I      C EC  C     NLC     T  G+  +G          
Sbjct: 72  TGFKVGDRVAVDPNIY-----CGECFYCRRGRPNLCEN--LTAVGVTRNGG--------- 115

Query: 142 LYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---LSCGYSSGFGAAW--KEFKVEK 196
               F      EY+VV A  V K+  ++    A     LSC       A        ++ 
Sbjct: 116 ----FA-----EYVVVPAKQVYKIPDNLSFEEAALAEPLSC-------AVHGLDLLGIKP 159

Query: 197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSI 256
           G SV VFG G +GL +    ++ GA+++   + N  + +  +  G T+ ++P  E  ++ 
Sbjct: 160 GDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQ 219

Query: 257 SELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEAKVPLNFPAIA 315
            E         G D   E TGV   + +A+E  + G G V+  G  A +A+V ++ P   
Sbjct: 220 KEDNPY-----GFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSIS-PFEI 272

Query: 316 LGRNLKGTIFG 326
             + L  TI G
Sbjct: 273 FQKEL--TIIG 281

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score =  126 bits (320), Expect = 6e-34
 Identities = 75/244 (30%), Positives = 109/244 (44%), Gaps = 25/244 (10%)

Query: 38  KATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVI 96
           + T+   KML  +IC TD+   KG  P     R+LGHEGVG+VE +G  V   K GD V+
Sbjct: 24  EPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVGDRVL 83

Query: 97  PTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYM- 155
            + I  C  C  C   + + C    +   G + DG                  T  EY+ 
Sbjct: 84  ISCISSCGTCGYCRKGLYSHCESGGWIL-GNLIDG------------------TQAEYVR 124

Query: 156 VVDA-NYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMD 214
           +  A N + K+   +D   A  LS    +G+       KV+ G +VA+ G G VGL  + 
Sbjct: 125 IPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALL 184

Query: 215 RARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE 274
            A++   +KII +D +  R +  +  G T  +N          E V E+T G GVD   E
Sbjct: 185 TAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKG---DAIEQVLELTDGRGVDVVIE 241

Query: 275 CTGV 278
             G+
Sbjct: 242 AVGI 245

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  122 bits (309), Expect = 2e-32
 Identities = 86/316 (27%), Positives = 136/316 (43%), Gaps = 34/316 (10%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEG 75
           A V    G P + EE+ V  P   EV  K+    +CHTD+ +++G +    +P V GHE 
Sbjct: 2   AAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEI 61

Query: 76  VGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSR 134
           VG V  +G  V+  K GD V +   +G C  CE C   + NLC K   T  G    G   
Sbjct: 62  VGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNT--GYTTQGG-- 117

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
                             EYMV DA Y V +   + L+ A  L C   + + +A ++   
Sbjct: 118 ----------------YAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVY-SALRDAGP 160

Query: 195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
             G  VAV G+G +G   +  AR  G  + + I ++P +++     G  + ++       
Sbjct: 161 RPGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARKLGADEVVD------- 212

Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGA-ANEAKVPLNFPA 313
           S +EL ++   G G D         +    AL   + G G+++ +G   +    P  FP 
Sbjct: 213 SGAELDEQAAAG-GADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESPPFSPDIFPL 270

Query: 314 IALGRNLKGTIFGGIK 329
           I   +++ G+  GG  
Sbjct: 271 IMKRQSIAGSTHGGRA 286

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  122 bits (308), Expect = 4e-32
 Identities = 89/299 (29%), Positives = 124/299 (41%), Gaps = 51/299 (17%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLF----PRVLGHEGVGMVESIG 83
           ++EE  +  P   EV  ++    IC +DV   K   +  F    P VLGHE  G V ++G
Sbjct: 11  RLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVG 70

Query: 84  DEVKELKEGDIV-----IPTFIGECRECENCTSEMANLCLKYPF--T--FHGLMPDGSSR 134
             V  LK GD V     +P     CR CE C S   NLC    F  T    G        
Sbjct: 71  SGVTHLKVGDRVAIEPGVP-----CRTCEFCKSGRYNLCPDMRFAATPPVDG-------- 117

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---LSCGYSSGFGAAWKE 191
                          T+  Y+   A++  K+  ++ L        LS G       A + 
Sbjct: 118 ---------------TLCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGV-----HACRR 157

Query: 192 FKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE 251
             V  G +V VFG G +GL     A+  GA K++  D +P R +  +  G T  +N   E
Sbjct: 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTE 217

Query: 252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEAKVPL 309
                +E + E+  G G D   ECTG  S I  A+ AT+ G G V+ +G    E  +PL
Sbjct: 218 DTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKPEVTLPL 275

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score =  118 bits (299), Expect = 3e-31
 Identities = 85/308 (27%), Positives = 133/308 (43%), Gaps = 38/308 (12%)

Query: 15  AAAVVCWGEGEPWKVEEIQVEPPKAT--EVRFKMLYASICHTDVLSSKGFPLPL-FPRVL 71
             A+V  G G P  VE  +V  P+    EV  K+  A IC +D+   KG   P+  P VL
Sbjct: 1   MKALVKTGPG-PGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVL 59

Query: 72  GHEGVGMVESIGDEVKELKEGD-IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
           GHE  G +  +G +V+  K GD +V  T    C  C  C     NLC  +     G   D
Sbjct: 60  GHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLC-PHRKGI-GTQAD 117

Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---LSCGYSSGFGA 187
           G                     EY++V    + ++  ++ L  A     L+    +    
Sbjct: 118 GG------------------FAEYVLVPEESLHELPENLSLEAAALTEPLAVAVHAVAER 159

Query: 188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKII-GIDKNPCRKDKGEAFGMTDFI 246
           +     +  G +V VFG G +GL     A++QGA  ++ G +K+  R D  +  G    +
Sbjct: 160 S----GIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADA-V 214

Query: 247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK 306
           N  +E    ++ELV E+T G G D   EC+G    + +ALE  + G G+++ +G      
Sbjct: 215 NGGEE---DLAELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVGIFGPLA 270

Query: 307 VPLNFPAI 314
             ++   I
Sbjct: 271 ASIDVERI 278

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score =  119 bits (299), Expect = 1e-30
 Identities = 84/319 (26%), Positives = 129/319 (40%), Gaps = 49/319 (15%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDV----LSSKG---FP-LPLFPRVLGHEGVGMV 79
           +VE++ V   K  E+  ++    IC +D+        G   +P L  FP V+GHE  G+V
Sbjct: 40  RVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVV 99

Query: 80  ESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRG 139
           E  G  VK  ++GD V    +  C  C  C S   N C        G   DG+       
Sbjct: 100 EKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKN--LKELGFSADGA------- 150

Query: 140 QKLYHIFTCSTMTEYMVVDANYVVKVDPSID------LSLAGFL----SCGYSSGF--GA 187
                        EY+ V+A Y  +++   +         AG L    S  Y+  F  G 
Sbjct: 151 -----------FAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIRGG 199

Query: 188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
            ++      G+ V V+G G +GL  +  A+  GA+K+I  + +  R++  +  G     N
Sbjct: 200 GFR-----PGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFN 254

Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKV 307
           P    +    E V E+T G G D   E  G        +E +    GK++ IG A    V
Sbjct: 255 PTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRA-ATTV 313

Query: 308 PLNFPAIALGRNLKGTIFG 326
           PL+   + + R     I G
Sbjct: 314 PLHLEVLQVRRA---QIVG 329

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score =  118 bits (299), Expect = 2e-30
 Identities = 86/309 (27%), Positives = 133/309 (43%), Gaps = 65/309 (21%)

Query: 19  VCWGEGEPWKVEEIQVEPPK---ATEVRFKMLYASICHTDVLSSKGFPLPLF-------- 67
           + W  G    V   +V  PK    T+   ++   +IC +D        L L+        
Sbjct: 4   LVW-HG-KGDVRVEEVPDPKIEDPTDAIVRVTATAICGSD--------LHLYHGYIPGMK 53

Query: 68  -PRVLGHEGVGMVESIGDEVKELKEGD-IVIPTFIGECRECENCTSEMANLCLKYPFTFH 125
              +LGHE +G+VE +G EV+ LK GD +V+P  I  C EC  C   + + C        
Sbjct: 54  KGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIA-CGECFYCKRGLYSQC-------- 104

Query: 126 GLMPDGSSRMSIRGQKLYH-----IFTCSTMT--------EYM-VVDANY-VVKVDPSID 170
               D ++  S    KLY      IF  S +T        EY+ V  A+    K+   + 
Sbjct: 105 ----DNTNP-SAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDDLS 159

Query: 171 LSLAGFLSCGYSSGFGAAWKEF-KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK 229
              A FLS    +G+ AA  E  +V+ G +VAV+G G VGL     A++ GA ++I ID+
Sbjct: 160 DEKALFLSDILPTGYHAA--ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDR 217

Query: 230 NPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEAT 289
            P R +   +    + IN ++  +  + E ++E+T G G D   +  G+        EA 
Sbjct: 218 VPERLEMARSHLGAETINFEEVDD--VVEALRELTGGRGPDVCIDAVGM--------EAH 267

Query: 290 KLGKGKVMA 298
                K   
Sbjct: 268 GSPLHKAEQ 276

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score =  116 bits (294), Expect = 4e-30
 Identities = 79/303 (26%), Positives = 118/303 (38%), Gaps = 38/303 (12%)

Query: 25  EPWKVEEIQVEPPKA--TEVRFKMLYASICHTDVLSSKGFPLPLFP-RVLGHEGVGMVES 81
              KV  I+   P     +   +    + C +DV +  G         +LGHE VG+VE 
Sbjct: 8   GIGKVGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEE 67

Query: 82  IGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLK----YPFTFHGLMPDGSSRMSI 137
           +G EVK+ K GD VI   I              +        + F       DG      
Sbjct: 68  VGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKF---SNFKDG------ 118

Query: 138 RGQKLYHIFTCSTMTEYMVV---DANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
                          EY  V   DAN +  +   +    A  L    S+GF  A +   +
Sbjct: 119 ------------VFAEYFHVNDADAN-LAPLPDGLTDEQAVMLPDMMSTGFHGA-ELANI 164

Query: 195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
           + G +VAVFG+G VGL  +  AR++GA +II +   P R +  + +G TD ++     N 
Sbjct: 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYK---NG 221

Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI 314
            + E + ++T G GVD      G      +AL+  K G G +  +    E    L  P  
Sbjct: 222 DVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGE-DDYLPIPRE 279

Query: 315 ALG 317
             G
Sbjct: 280 EWG 282

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  114 bits (288), Expect = 2e-29
 Identities = 85/307 (27%), Positives = 136/307 (44%), Gaps = 35/307 (11%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEG 75
           A +     +P ++EE+    P   EV  K+  A +C+ D+L  KG FP   +P +LGHE 
Sbjct: 3   AAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEI 62

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRM 135
           VG VE +G+ V+  K GD VI  +   C +CE C S   NLC +     +G   DG    
Sbjct: 63  VGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLC-RNR-AEYGEEVDGGFA- 119

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
                            EY+ V    +VK+  ++    A   +C   +   A  K   V+
Sbjct: 120 -----------------EYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KRAGVK 161

Query: 196 KGSSVAV-FGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
           KG +V V    G VG+  +  A+  G A++I + ++P +    +  G    I+       
Sbjct: 162 KGDTVLVTGAGGGVGIHAIQLAKALG-ARVIAVTRSPEKLKILKELGADYVID-----GS 215

Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI 314
             SE VK++    G D   E  G +  I E+L +   G G+++ IG       PL  P +
Sbjct: 216 KFSEDVKKL---GGADVVIELVG-SPTIEESLRSLNKG-GRLVLIGNVTPDPAPLR-PGL 269

Query: 315 ALGRNLK 321
            + + ++
Sbjct: 270 LILKEIR 276

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  113 bits (286), Expect = 4e-29
 Identities = 79/317 (24%), Positives = 130/317 (41%), Gaps = 35/317 (11%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFP----LPLFPRVLG 72
           A   +  G+P ++E++ V  P   +V  ++  A +CH+D+    G          P  LG
Sbjct: 3   AARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLG 62

Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
           HE  G VE +G  V  LKEGD V+      C  C  C     N C      F G+  DG 
Sbjct: 63  HENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCE--NARFPGIGTDGG 120

Query: 133 SRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
                               EY++V +  +VK+   +D   A  L+    + + A  K  
Sbjct: 121 ------------------FAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKAL 162

Query: 193 KV-EKGSSVAVFGLGAVGLGVM--DRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
              + GS+V V G+G  GLG +     R    A +I +D++       E  G    +N  
Sbjct: 163 PYLDPGSTVVVIGVG--GLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNAS 220

Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPL 309
           D+      E V+E+T G G D   +  G    ++ A +    G G+ + +G     ++P 
Sbjct: 221 DDV----VEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGHGRLPT 275

Query: 310 NFPAIALGRNLKGTIFG 326
               +    ++ G+++G
Sbjct: 276 -SDLVPTEISVIGSLWG 291

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score =  111 bits (280), Expect = 3e-28
 Identities = 94/311 (30%), Positives = 140/311 (45%), Gaps = 35/311 (11%)

Query: 17  AVVCWGEGEPWKVEEIQV-EPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEG 75
           AVV  G G+  +VEE+ + +    T+   K+  A+IC +D+   +G        VLGHE 
Sbjct: 3   AVVFKGPGDV-RVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPSTPGFVLGHEF 61

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMP--DGSS 133
           VG V  +G EV+ LK GD V+  F   C EC  C    +  C K     +   P  DG  
Sbjct: 62  VGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDG-- 119

Query: 134 RMSIRGQKLYHIFTCSTMTEYMVV---DANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
                 Q            EY+ V   D   ++K+   +    A  L     +G+  A K
Sbjct: 120 -----AQ-----------AEYVRVPFADGT-LLKLPDGLSDEAALLLGDILPTGYFGA-K 161

Query: 191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
             +V  G +VAV G G VGL  +  A++ GAA++  +D  P R ++  A G  + IN +D
Sbjct: 162 RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALG-AEPINFED 220

Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN 310
                  E V+E T G G D   E  G A+ +  A +  + G G + ++G     + P  
Sbjct: 221 AEPV---ERVREATEGRGADVVLEAVGGAAALDLAFDLVRPG-GVISSVGVHTAEEFP-- 274

Query: 311 FPAI-ALGRNL 320
           FP + A  +NL
Sbjct: 275 FPGLDAYNKNL 285

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  111 bits (280), Expect = 3e-28
 Identities = 74/306 (24%), Positives = 127/306 (41%), Gaps = 36/306 (11%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEG 75
           A V    GEP ++ E+    P    V  ++    +C +D    +G  P    P V GHE 
Sbjct: 3   AAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEF 62

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC--LKYPFTFHGLMPDGSS 133
            G+V  +G++V   + GD V   F+  C  C  C +  +N+C     P    G    GS 
Sbjct: 63  AGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQP----GFTHPGS- 117

Query: 134 RMSIRGQKLYHIFTCSTMTEYMVV---DANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
                              EY+ V   D N +V++   +D   A  L C +++ F A   
Sbjct: 118 -----------------FAEYVAVPRADVN-LVRLPDDVDFVTAAGLGCRFATAFRALVH 159

Query: 191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
           + +V+ G  VAV G G VGL  +  A   G A++I +D +  + +     G    +N  +
Sbjct: 160 QARVKPGEWVAVHGCGGVGLSAVMIASALG-ARVIAVDIDDDKLELARELGAVATVNASE 218

Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG--AANEAKVP 308
             +  ++  V+++T G G     +  G+      ++ + +   G+ + +G     EA V 
Sbjct: 219 VED--VAAAVRDLTGG-GAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVA 274

Query: 309 LNFPAI 314
           L    +
Sbjct: 275 LPMDRV 280

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  106 bits (268), Expect = 2e-26
 Identities = 91/334 (27%), Positives = 141/334 (42%), Gaps = 54/334 (16%)

Query: 15  AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF------------ 62
           AAAVV  G+  P +  EI    P  TEV  K+    +CH+D+    G             
Sbjct: 3   AAAVVEPGK--PLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLD 60

Query: 63  -PLPLFPRVLGHEGVGMVESIGDEVKELKEGD--IVIPTFIGECRECENCTSEMANLCLK 119
                 P VLGHE VG V ++G +  ++K GD  +V P +IG C EC  C +   NLC K
Sbjct: 61  DRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYP-WIG-CGECPVCLAGDENLCAK 118

Query: 120 YPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSC 179
                 G+  DG                     EY++V  +  +     +D +LA  L+C
Sbjct: 119 G--RALGIFQDGGY------------------AEYVIVPHSRYLVDPGGLDPALAATLAC 158

Query: 180 GYSSG---FGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDK 236
              SG   + A  K   +     V + G G +GL  +   +  G A II +D +  + + 
Sbjct: 159 ---SGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEA 215

Query: 237 GEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKV 296
            +A G    +N  D    +   ++K    G GVD   +    ++  S A +    G GK+
Sbjct: 216 AKAAGADVVVNGSDP--DAAKRIIKAA--GGGVDAVIDFVNNSATASLAFDILAKG-GKL 270

Query: 297 MAIGA-ANEAKVPLNFPAIALG-RNLKGTIFGGI 328
           + +G    EA +PL  P + L    ++G+  G +
Sbjct: 271 VLVGLFGGEATLPL--PLLPLRALTIQGSYVGSL 302

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score =  105 bits (265), Expect = 4e-26
 Identities = 76/280 (27%), Positives = 118/280 (42%), Gaps = 38/280 (13%)

Query: 25  EPWKVEEIQVEPP---KATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVES 81
            P  +   +V  P   + T+   +++   +C +D+   +G      P  +GHE VG+VE 
Sbjct: 8   GPGDIRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPTRAPAPIGHEFVGVVEE 67

Query: 82  IGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQK 141
           +G EV  +K GD VI  F      C  C +     C+     F G   DG      +G+ 
Sbjct: 68  VGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHG--GFWGAFVDGG-----QGEY 120

Query: 142 LYHIFTCSTMTEYMVVDANYVVKV--DPSID-------LSLAGFLSCGYSSGFGAAWKEF 192
           +       T           +VKV   PS D       L+L+  +  G+ +   A     
Sbjct: 121 VRVPLADGT-----------LVKVPGSPSDDEDLLPSLLALSDVMGTGHHAAVSA----- 164

Query: 193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP 252
            V  GS+V V G GAVGL  +  A+  GA +II + ++  R+     FG TD +    E 
Sbjct: 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIV---AER 221

Query: 253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLG 292
            +     V+E+T G G D   EC G    + +A+   + G
Sbjct: 222 GEEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG 261

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score =  105 bits (264), Expect = 9e-26
 Identities = 77/277 (27%), Positives = 109/277 (39%), Gaps = 41/277 (14%)

Query: 16  AAVVCWGEGEPWKVEEIQVEPPK---ATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLG 72
            AVV    G P  V    V  PK    T+   ++   +IC +D+   +G        VLG
Sbjct: 2   KAVV---YGGPGNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGAEPGLVLG 58

Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
           HE +G VE +G  V+ LK GD V+  F   C  C NC   +  +CL       G      
Sbjct: 59  HEAMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYV 118

Query: 133 SRMSIRGQKLYHIFTCSTMTEYMVV---DANYVVKVDPSID-------LSLAGFLSCGYS 182
                 G             EY+ V   D N ++K+            L L+     G+ 
Sbjct: 119 DMGPYGG----------GQAEYLRVPYADFN-LLKLPDRDGAKEKDDYLMLSDIFPTGW- 166

Query: 183 SGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM 242
              G      +   G +VAVFG G VGL     A ++GA+++  +D  P R D  E+ G 
Sbjct: 167 --HGLELAGVQP--GDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA 222

Query: 243 T--DFINPDDEPNKSISELVKEMTHGTGVDYGFECTG 277
              DF + D        E +  +  G GVD   +C G
Sbjct: 223 IPIDFSDGDP------VEQILGLEPG-GVDRAVDCVG 252

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 98.1 bits (245), Expect = 2e-25
 Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 21/128 (16%)

Query: 39  ATEVRFKMLYASICHTDVLSSKGFPLPL-FPRVLGHEGVGMVESIGDEVKELKEGDIVIP 97
             EV  ++  A IC +D+   +G P P+  P +LGHEG G+VE +G  V  LK GD V+ 
Sbjct: 1   PGEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVV 60

Query: 98  TFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVV 157
             +  C +C  C     NLC      F G+  DG                     EY+VV
Sbjct: 61  YPLIPCGKCAACREGRENLCPNG--KFLGVHLDG------------------GFAEYVVV 100

Query: 158 DANYVVKV 165
            A  +V +
Sbjct: 101 PARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  101 bits (253), Expect = 1e-24
 Identities = 83/287 (28%), Positives = 127/287 (44%), Gaps = 37/287 (12%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPRVLGHEG 75
           AV+  G  + +++EE+    P   EV  K+ YA +C+ D+L  +GF P   +P +LGHE 
Sbjct: 3   AVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEV 62

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRM 135
           VG VE +G+ VK  K GD V          CE C S     C               +R+
Sbjct: 63  VGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC--------------KNRL 108

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
              G++L   F      EY  V    +VKV P++    A  + C     +    +   V+
Sbjct: 109 GY-GEELDGFF-----AEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL-RRAGVK 161

Query: 196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG-MTDFINPDDEPN 253
           KG +V V G  G VG+  +  A+  G AK+I +  +     K +      D++       
Sbjct: 162 KGETVLVTGAGGGVGIHAIQVAKALG-AKVIAVTSSE---SKAKIVSKYADYV----IVG 213

Query: 254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG 300
              SE VK++    G D   E  G  +L  E+L +  +G GK++ IG
Sbjct: 214 SKFSEEVKKI---GGADIVIETVGTPTL-EESLRSLNMG-GKIIQIG 255

Length = 334

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score =  100 bits (251), Expect = 3e-24
 Identities = 88/312 (28%), Positives = 127/312 (40%), Gaps = 45/312 (14%)

Query: 24  GEPWKVEEIQVEPPKATEVRFKMLYASICHTDV------LSSKGFPLPLFPRVLGHEGVG 77
           G   ++ E+ V  P   EV  K+L ASIC TDV        ++    P  P + GHE  G
Sbjct: 10  GPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKP--PLIFGHEFAG 67

Query: 78  MVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMS 136
            V  +G+ V  +K GD V   T I  C +C  C +   ++C                   
Sbjct: 68  EVVEVGEGVTRVKVGDYVSAETHIV-CGKCYQCRTGNYHVCQN---------------TK 111

Query: 137 IRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE- 195
           I G     + T     EY+VV    + K D  I   +A           G A        
Sbjct: 112 ILG-----VDTDGCFAEYVVVPEENLWKNDKDIPPEIASIQE-----PLGNAVHTVLAGD 161

Query: 196 -KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
             G SV + G G +GL  +  A+  GA+ +I  D NP R +  +  G    INP +E   
Sbjct: 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVV 221

Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI 314
                VK +T GTGVD   E +G    I + L+A   G G+V  +G      V ++   +
Sbjct: 222 ----EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPPG-PVDIDLNNL 275

Query: 315 ALGRNLKGTIFG 326
            + + L  T+ G
Sbjct: 276 VIFKGL--TVQG 285

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 99.3 bits (248), Expect = 7e-24
 Identities = 75/309 (24%), Positives = 115/309 (37%), Gaps = 61/309 (19%)

Query: 22  GEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL--SSKGFPLPLFPRVLGHEGVGMV 79
           G  E  KV E+    P   EV  ++  A +   DVL       P+   P + G E  G+V
Sbjct: 10  GGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVV 69

Query: 80  ESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRG 139
            ++G  V   K GD V                              G+  DG        
Sbjct: 70  VAVGSGVTGFKVGDRVAALG--------------------------GVGRDGG------- 96

Query: 140 QKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSS 199
                        EY+VV A+++V +   +    A  L     + + A +    ++ G +
Sbjct: 97  -----------YAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGET 145

Query: 200 VAVFG-LGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE---AFGMTDFINPDDEPNKS 255
           V V G  G VG   +  A+  GA  +  +       +K E     G    IN  +E    
Sbjct: 146 VLVHGAAGGVGSAAIQLAKALGATVVAVV----SSSEKLELLKELGADHVINYREE---D 198

Query: 256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAI 314
             E V+E+T G GVD   +  G     + +L A   G G++++IGA +    VPLN   +
Sbjct: 199 FVEQVRELTGGKGVDVVLDTVG-GDTFAASLAALAPG-GRLVSIGALSGGPPVPLNLLPL 256

Query: 315 ALGRNLKGT 323
            LG+ L   
Sbjct: 257 -LGKRLTLR 264

Length = 326

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 96.3 bits (240), Expect = 1e-22
 Identities = 88/298 (29%), Positives = 136/298 (45%), Gaps = 46/298 (15%)

Query: 29  VEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVKE 88
           V E  + P K  E   KM Y  +CHTD+  + G       R+LGHEG+G+V+ +G  V  
Sbjct: 15  VVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTGRILGHEGIGIVKEVGPGVTS 74

Query: 89  LKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFT 147
           LK GD V I  F   C  CE CT+    LC        G   DG                
Sbjct: 75  LKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNA--GYTVDGG--------------- 117

Query: 148 CSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGA 207
              M E  +V A+Y VKV   +D + A  ++C   + + A  K   ++ G  +A++G G 
Sbjct: 118 ---MAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAG- 172

Query: 208 VGLGVMDRARIQGA-----AKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKE 262
            GLG +    +Q A     AK+I +D N  +    +  G    IN     +  ++++++E
Sbjct: 173 -GLGNL---ALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVED--VAKIIQE 226

Query: 263 MT---HGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL 316
            T   H   V      T VA +  ++A++A + G G+V+A+G   E  + L+ P + L
Sbjct: 227 KTGGAHAAVV------TAVAKAAFNQAVDAVRAG-GRVVAVGLPPE-SMDLSIPRLVL 276

Length = 338

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 91.2 bits (227), Expect = 1e-22
 Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 207 AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHG 266
            VGL  +  A+  GAA++I +D++  + +  +  G    IN  DE      E V+E+T G
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDE---DFVERVRELTGG 57

Query: 267 TGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF 325
            GVD   +C G  + + +ALE  + G G+V+ +G    A VP     + L    + G++ 
Sbjct: 58  RGVDVVIDCVGAPATLEQALELLRPG-GRVVVVGLPGGAPVPFPLRDLLLKELTILGSLG 116

Query: 326 GGIKT 330
           GG + 
Sbjct: 117 GGREE 121

Length = 131

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 95.3 bits (238), Expect = 2e-22
 Identities = 62/201 (30%), Positives = 82/201 (40%), Gaps = 23/201 (11%)

Query: 23  EGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVES 81
           E  P ++ E+ V  P   EV  K+    +C TD+   +G  P P  P + GHE VG VE+
Sbjct: 13  EENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEA 72

Query: 82  IGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQ 140
           +G  V     GD V +P     C EC  C S   NLC      F G   DG         
Sbjct: 73  VGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDN--ARFTGYTVDGG-------- 122

Query: 141 KLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSV 200
             Y         EYMV D  +   +    D   A  L C    G+  A K   ++ G  +
Sbjct: 123 --Y--------AEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYR-ALKLAGLKPGQRL 171

Query: 201 AVFGLGAVGLGVMDRARIQGA 221
            ++G GA     +  AR QGA
Sbjct: 172 GLYGFGASAHLALQIARYQGA 192

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 94.6 bits (236), Expect = 3e-22
 Identities = 84/318 (26%), Positives = 130/318 (40%), Gaps = 60/318 (18%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEG 75
           AV     G P ++ E  V  P   EV  K+    +CH+D    +G  P   +PRV GHE 
Sbjct: 3   AVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEV 62

Query: 76  VGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSR 134
           VG ++++G+ V   K GD V +    G C  C+ C       C     T  G+  DG   
Sbjct: 63  VGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVT--GVTRDGG-- 118

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
                   Y         EYM+  A  + ++   +D + A  L C   + F A  +    
Sbjct: 119 --------Y--------AEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNAL-RNSGA 161

Query: 195 EKGSSVAVFGLGAVGLGVMDRARIQGAAK----IIGIDKNPCRKDKGEAFGMTDFINPDD 250
           + G  VAV G+G  GLG +    +Q AAK     + I +   + D     G   +I+   
Sbjct: 162 KPGDLVAVQGIG--GLGHLA---VQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSK 216

Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLI------SEALEATKLG---KGKVMAIGA 301
           E    ++E ++E+             G A LI      ++A+ A   G   +GK++ +GA
Sbjct: 217 E---DVAEALQEL-------------GGAKLILATAPNAKAISALVGGLAPRGKLLILGA 260

Query: 302 ANEAKVPLNFPAIALGRN 319
           A E   P+    + L   
Sbjct: 261 AGE---PVAVSPLQLIMG 275

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 94.6 bits (236), Expect = 5e-22
 Identities = 74/304 (24%), Positives = 125/304 (41%), Gaps = 39/304 (12%)

Query: 17  AVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPL--FPRVLG 72
           AVV  G G P   +  ++    P   EV  ++  A++ H D+   +G P      P +LG
Sbjct: 3   AVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILG 62

Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
            +G G+VE++G  V  +K G  V+      C  CE C +   NLC +Y     G   DG 
Sbjct: 63  SDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQY--GILGEHVDG- 119

Query: 133 SRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
                               EY+ V A  ++ +  ++    A          F  AW   
Sbjct: 120 -----------------GYAEYVAVPARNLLPIPDNLSFEEAA----AAPLTFLTAWHML 158

Query: 193 ----KVEKGSSVAVFGLGA-VGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
               ++  G +V V G G+ VG   +  A++ G A +I    +  + ++ +  G    I+
Sbjct: 159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKLFG-ATVIATAGSEDKLERAKELGADYVID 217

Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKV 307
              E        V+E+T   GVD   E  G A+   ++L++   G G+++  GA    + 
Sbjct: 218 YRKED---FVREVRELTGKRGVDVVVEHVG-AATWEKSLKSLARG-GRLVTCGATTGYEA 272

Query: 308 PLNF 311
           P++ 
Sbjct: 273 PIDL 276

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 92.8 bits (231), Expect = 1e-21
 Identities = 68/299 (22%), Positives = 108/299 (36%), Gaps = 73/299 (24%)

Query: 25  EPWKVEEIQVEPPKAT--EVRFKMLYASICHTDVLS-SKGFPL---PLFPRVLGHEGVGM 78
            P + E  +   P     +V  ++    +C +D+ + ++G P    P  P   GHEG G 
Sbjct: 3   GPGRFEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGR 62

Query: 79  VESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIR 138
           V ++G  V+ L  GD V                      L                    
Sbjct: 63  VVALGPGVRGLAVGDRV--------------------AGLSGG----------------- 85

Query: 139 GQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF------LSCGYSSGFGAAWKEF 192
                         EY + DA++ V +   +D    G       L C  +      ++  
Sbjct: 86  -----------AFAEYDLADADHAVPLPSLLD----GQAFPGEPLGCALN-----VFRRG 125

Query: 193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP 252
            +  G +VAV G G +GL  +  A   GA ++I ID+ P R       G T+ +  D E 
Sbjct: 126 WIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSE- 184

Query: 253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNF 311
             +I E V+E+T G G D   E  G    +  A E      G+++  G   +   P+ F
Sbjct: 185 --AIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQDGPRPVPF 240

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 89.5 bits (222), Expect = 3e-20
 Identities = 81/282 (28%), Positives = 113/282 (40%), Gaps = 47/282 (16%)

Query: 31  EIQVEPPKATEVRFKMLYASICHTDV-------LSSKGFPLPLFPRVLGHEGVGMVESIG 83
           E+ V  P   EV  K+L  SIC TDV        +      P    V+GHE  G V  IG
Sbjct: 15  EVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQ---VVGHEVAGEVVGIG 71

Query: 84  DEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKL 142
             V+ +K GD V + T I  C +C  C     ++C                    +  K+
Sbjct: 72  PGVEGIKVGDYVSVETHI-VCGKCYACRRGQYHVC--------------------QNTKI 110

Query: 143 YHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK---EFKVEKGSS 199
           + + T     EY VV A  + K   SI    A           G A        +  G S
Sbjct: 111 FGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYATI-----QEPLGNAVHTVLAGPI-SGKS 164

Query: 200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE-PNKSISE 258
           V V G G +GL  +  A+  GA  +I  D N  R +  +  G T  +NP  E   K +++
Sbjct: 165 VLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVAD 224

Query: 259 LVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG 300
           L    T G GVD   E +G    + + L+A   G G+V  +G
Sbjct: 225 L----TDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLG 261

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 89.1 bits (222), Expect = 4e-20
 Identities = 75/282 (26%), Positives = 111/282 (39%), Gaps = 53/282 (18%)

Query: 30  EEIQVEPPKATEVRFKMLYASICHTDV-------LSSKGFPLPLFPRVLGHEGVGMVESI 82
            ++ V  P   +V  K+   +IC TDV        + K  P+P+   V+GHE VG V  +
Sbjct: 16  TDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPM---VVGHEFVGEVVEV 72

Query: 83  GDEVKELKEGDIVIPTFIGE----CRECENCTSEMANLCLKYPFTFH-GLMPDGSSRMSI 137
           G EV   K GD V     GE    C  C NC +   +LC     T   G+   G+     
Sbjct: 73  GSEVTGFKVGDRVS----GEGHIVCGHCRNCRAGRRHLC---RNTKGVGVNRPGA----- 120

Query: 138 RGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK---EFKV 194
                          EY+V+ A  V K+   I   LA          FG A      F +
Sbjct: 121 -------------FAEYLVIPAFNVWKIPDDIPDDLAAIFD-----PFGNAVHTALSFDL 162

Query: 195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
             G  V + G G +G+     A+  GA  ++  D N  R +     G T  +N   E   
Sbjct: 163 -VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKE--- 218

Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKV 296
            + +++ E+    G D G E +G  S   + L+    G G++
Sbjct: 219 DLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRI 259

Length = 341

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 88.1 bits (219), Expect = 1e-19
 Identities = 78/305 (25%), Positives = 108/305 (35%), Gaps = 65/305 (21%)

Query: 29  VEEIQVEPPKATEVRFKMLYASICHTD------------VLSSKGFPLPLFPRVLGHEGV 76
           VEE     P   EVR ++    IC +D             L          P VLGHE  
Sbjct: 11  VEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLRE--------PMVLGHEVS 62

Query: 77  GMVESIGDEVKELKEGDIVI-----PTFIGECRECENCTSEMANLCLKYPFTFHGLMPDG 131
           G+VE++G  V  L  G  V      P     C  C+ C +   NLCL             
Sbjct: 63  GVVEAVGPGVTGLAPGQRVAVNPSRP-----CGTCDYCRAGRPNLCL------------- 104

Query: 132 SSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKE 191
              M   G  +          EY+VVDA+  V +   + L  A       +     A   
Sbjct: 105 --NMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-----AEPLAVALH- 156

Query: 192 FKVEK-----GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI 246
             V +     G  V V G G +G  V+  AR  GAA+I+  D          A G  + +
Sbjct: 157 -AVNRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETV 215

Query: 247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEA 305
           N   +P      L          D  FE +G  + ++ AL   + G G V+ +G      
Sbjct: 216 NLARDP------LAAYAADKGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLGGPV 268

Query: 306 KVPLN 310
            +PLN
Sbjct: 269 PLPLN 273

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 87.2 bits (216), Expect = 2e-19
 Identities = 88/305 (28%), Positives = 129/305 (42%), Gaps = 48/305 (15%)

Query: 39  ATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-I 96
             +V  K++Y  ICHTD+   K    +  +P V GHE VG V  +G +V +   GDIV +
Sbjct: 34  PEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGV 93

Query: 97  PTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMV 156
              +G C EC  C S++   C K  ++++ +  DG               T       MV
Sbjct: 94  GVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKP-------------TQGGFASAMV 140

Query: 157 VDANYVVKVDPSIDLSLAGFLSCG----YS--SGFGAAWKEFKVEKGSSVAVFGLGAVG- 209
           VD  +VVK+   +    A  L C     YS  S FG        + G    + GLG VG 
Sbjct: 141 VDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFG------LKQSGLRGGILGLGGVGH 194

Query: 210 LGV-MDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTH-GT 267
           +GV + +A       I   DK   R++  E  G  D++         +S    EM     
Sbjct: 195 MGVKIAKAMGHHVTVISSSDKK--REEALEHLGADDYL---------VSSDAAEMQEAAD 243

Query: 268 GVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNF--PAIALGR-NLKGTI 324
            +DY  +   V   +   L   KL  GK++ +G  N    PL F  P + LGR  + G+ 
Sbjct: 244 SLDYIIDTVPVFHPLEPYLSLLKL-DGKLILMGVINT---PLQFVTPMLMLGRKVITGSF 299

Query: 325 FGGIK 329
            G +K
Sbjct: 300 IGSMK 304

Length = 357

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 87.1 bits (216), Expect = 3e-19
 Identities = 83/297 (27%), Positives = 119/297 (40%), Gaps = 50/297 (16%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLF--------- 67
           AVVC G  + +++EE+ V  P   E+  K+    IC  D+    G   P F         
Sbjct: 3   AVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHG--APSFWGDENQPPY 59

Query: 68  ---PRVLGHEGVGMVESIGDEVKE--LKEGDIVIPTFIGECRECENCTSEMANLCLKYP- 121
              P + GHE VG V  +G+  +E  +K GD VI   I  C  C  C      +C K+  
Sbjct: 60  VKPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL 119

Query: 122 FTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVV-KVDPSIDLSLAGF---L 177
           + F   +  G                   M EYM      +V KV   I    A     L
Sbjct: 120 YGFQNNVNGG-------------------MAEYMRFPKEAIVHKVPDDIPPEDAILIEPL 160

Query: 178 SCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG 237
           +C        A     ++    V + G G +GLG++  AR++   K+I +D    R    
Sbjct: 161 ACALH-----AVDRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALA 215

Query: 238 EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEAT-KLGK 293
             FG    +NP   P   + E +KE+T G G D   E TG  S + + L    KLG+
Sbjct: 216 RKFGADVVLNP---PEVDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGR 269

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 85.7 bits (212), Expect = 7e-19
 Identities = 80/295 (27%), Positives = 134/295 (45%), Gaps = 32/295 (10%)

Query: 41  EVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPT 98
           +V  K+LY  +CH+D+ + K  +    +P V GHE VG+V  +G  VK+ KEGD V +  
Sbjct: 39  DVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGV 98

Query: 99  FIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVD 158
            +G C+ CE+C  ++ N C K  FT++ +  DG+                   ++ +VVD
Sbjct: 99  IVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTK-------------NYGGYSDMIVVD 145

Query: 159 ANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARI 218
            ++V++   ++ L     L C   + +         E G  + V GLG +G   +   + 
Sbjct: 146 QHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKA 205

Query: 219 QGAAKIIGIDKNPCRKDKG-EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG 277
            G  K+  I  +  ++D+     G   F+   D P K  + +      GT +DY  +   
Sbjct: 206 FG-LKVTVISSSSNKEDEAINRLGADSFLVSTD-PEKMKAAI------GT-MDYIIDTVS 256

Query: 278 VASLISEALEATKLGKGKVMAIGAANEAKVPLNFP--AIALGRNL-KGTIFGGIK 329
               +   L   K+  GK++ +G   +   PL  P   + LGR L  G+  GGIK
Sbjct: 257 AVHALGPLLGLLKV-NGKLITLGLPEK---PLELPIFPLVLGRKLVGGSDIGGIK 307

Length = 360

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 84.2 bits (209), Expect = 8e-19
 Identities = 57/240 (23%), Positives = 84/240 (35%), Gaps = 66/240 (27%)

Query: 62  FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYP 121
             LPL P   G+  VG V  +G  V   K GD V                          
Sbjct: 16  EKLPL-PLPPGYSSVGRVVEVGSGVTGFKPGDRV-------------------------- 48

Query: 122 FTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGY 181
           F F                   H        E +VV AN +V +   +    A   +   
Sbjct: 49  FCFGP-----------------H-------AERVVVPANLLVPLPDGLPPERAALTALA- 83

Query: 182 SSGFGAAWK-EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF 240
           ++        E ++  G  VAV GLG VGL     A+  GA +++G+D +  R++  EA 
Sbjct: 84  ATALNGVRDAEPRL--GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL 141

Query: 241 GMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG 300
           G  D +  D            +   G G D   E +G  S +  AL   +   G+V+ +G
Sbjct: 142 GPADPVAADTA----------DEIGGRGADVVIEASGSPSALETALRLLRDR-GRVVLVG 190

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 85.6 bits (212), Expect = 9e-19
 Identities = 86/299 (28%), Positives = 126/299 (42%), Gaps = 39/299 (13%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLF----PRVLGHEGVGMVESIG 83
           K++  ++ P    +VR +M    IC +DV   K      F    P V+GHE  G++E +G
Sbjct: 30  KIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVG 89

Query: 84  DEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLY 143
            EVK L  GD V       C  C  C     NLC           P+    M        
Sbjct: 90  SEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLC-----------PE----MKFFATPPV 134

Query: 144 HIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---LSCGYSSGFGAAWKEFKVEKGSSV 200
           H     ++   +V  A+   K+  ++ L        LS G       A +   +   ++V
Sbjct: 135 H----GSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVH-----ACRRANIGPETNV 185

Query: 201 AVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI---NPDDEPNKSIS 257
            V G G +GL  M  AR  GA +I+ +D +  R    +  G  + +      ++    + 
Sbjct: 186 LVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVE 245

Query: 258 ELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAA-NEAKVPLNFPAIA 315
           E+ K M  G G+D  F+C G    +S ALEAT+ G GKV  +G   NE  VPL  PA A
Sbjct: 246 EIQKAM--GGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHNEMTVPLT-PAAA 300

Length = 364

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 80.0 bits (198), Expect = 7e-17
 Identities = 83/289 (28%), Positives = 106/289 (36%), Gaps = 45/289 (15%)

Query: 16  AAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTD---VLSSKGFPLPLFPR-VL 71
           A  V  G+    +V +I    P   EV  + L   +C TD   V    G   P     VL
Sbjct: 3   AIAVKPGKPGV-RVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVL 61

Query: 72  GHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDG 131
           GHE +G+VE +GD    L  GD+V+PT      +C NC     + C             G
Sbjct: 62  GHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFC-----------ETG 109

Query: 132 SSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSI-DLS-LAGFLSC---GYSSGFG 186
                 RG K  H F    M EY V D  Y+VKV PS+ D+  L   LS           
Sbjct: 110 EYTE--RGIKGLHGF----MREYFVDDPEYLVKVPPSLADVGVLLEPLSVVEKAIEQAE- 162

Query: 187 AAWKEFKVEKGSSVAVFGLGAVGL-----GVMDRARIQGAAKIIGIDKNPCRKDKGEAFG 241
           A  K           V G G +GL       +    +    +    D    + D  E  G
Sbjct: 163 AVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR---RDPPDPKADIVEELG 219

Query: 242 MTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATK 290
            T ++N    P     +LV E       D   E TGV  L  EAL A  
Sbjct: 220 AT-YVNSSKTPVAE-VKLVGEF------DLIIEATGVPPLAFEALPALA 260

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 68/300 (22%), Positives = 113/300 (37%), Gaps = 70/300 (23%)

Query: 22  GEGEPWKVEEIQVEPPKAT--EVRFKMLYASICHTDVLSSKG-FP-LPLFPRVLGHEGVG 77
           GE  P  +E + +  P     EV  +ML A I  +D+++  G +   P  P V G+EGVG
Sbjct: 7   GEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVG 66

Query: 78  MVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSI 137
           +V  +G  V  L  G  V+P                                        
Sbjct: 67  VVVEVGSGVSGLLVGQRVLP---------------------------------------- 86

Query: 138 RGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW---KEF-K 193
                  +    T  EY+V  A+ ++ V  SI    A   +  Y +    AW    E+ K
Sbjct: 87  -------LGGEGTWQEYVVAPADDLIPVPDSISDEQA---AMLYINPL-TAWLMLTEYLK 135

Query: 194 VEKGSSVAVFGLG-AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP 252
           +  G  V       AVG  ++  A++ G  K I + +   + ++ +A G  + I+   E 
Sbjct: 136 LPPGDWVIQNAANSAVGRMLIQLAKLLG-FKTINVVRRDEQVEELKALGADEVIDSSPE- 193

Query: 253 NKSISELVKEMTHGTGVDYGFECTG--VASLISEALEATKLGKGKVMAIGAANEAKVPLN 310
              +++ VKE T G G     +  G   A+ ++ +L       G ++  G  +   VP  
Sbjct: 194 --DLAQRVKEATGGAGARLALDAVGGESATRLARSLRPG----GTLVNYGLLSGEPVPFP 247

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 78.1 bits (192), Expect = 4e-16
 Identities = 75/295 (25%), Positives = 131/295 (44%), Gaps = 31/295 (10%)

Query: 41  EVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPT 98
           +V  K+L+  +CH+D+ + K  +    +P + GHE VG+   +G  V + KEGD V +  
Sbjct: 33  DVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGV 92

Query: 99  FIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVD 158
            IG C+ CE+C  ++ N C K  FT++    DG+     R Q  Y        ++ +VVD
Sbjct: 93  IIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGT-----RNQGGY--------SDVIVVD 139

Query: 159 ANYVVKVDPSIDLSLAGFLSC-GYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRAR 217
             +V+ +   +       L C G +      +     E G  + V GLG +G   +   +
Sbjct: 140 HRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGK 199

Query: 218 IQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG 277
             G    +    +   ++  +  G   F+   D      S+ +KE   GT +D+  +   
Sbjct: 200 AFGLRVTVISRSSEKEREAIDRLGADSFLVTTD------SQKMKEAV-GT-MDFIIDTVS 251

Query: 278 VASLISEALEATKLGKGKVMAIGAANEAKVPLNFP--AIALGRNL-KGTIFGGIK 329
               +       K+  GK++A+G   +   PL+ P   + LGR +  G+  GG+K
Sbjct: 252 AEHALLPLFSLLKV-SGKLVALGLPEK---PLDLPIFPLVLGRKMVGGSQIGGMK 302

Length = 375

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 76.8 bits (190), Expect = 8e-16
 Identities = 72/306 (23%), Positives = 125/306 (40%), Gaps = 40/306 (13%)

Query: 25  EPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPL-FPRVLGHEGVGMVESI 82
           +  K+ E  V  P   EV  ++   S+ + D+L   G +P P+  P +   +G G V ++
Sbjct: 13  DNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAV 72

Query: 83  GDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKL 142
           G+ V   K GD V+PTF                     P    G         ++ G   
Sbjct: 73  GEGVTRFKVGDRVVPTFF--------------------PNWLDGPPTAEDEASALGGPID 112

Query: 143 YHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAV 202
                   + EY+V+    +V+    +    A  L C   + + A +    ++ G +V V
Sbjct: 113 G------VLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLV 166

Query: 203 FGLGAVGLGVMDRARIQGAAKII--GIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELV 260
            G G V L  +  A+  GA  I     D+   + ++ +A G    IN    P+    E V
Sbjct: 167 QGTGGVSLFALQFAKAAGARVIATSSSDE---KLERAKALGADHVINYRTTPD--WGEEV 221

Query: 261 KEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNL 320
            ++T G GVD+  E  G  +L +++++A   G G +  IG  +  + P+    + L +  
Sbjct: 222 LKLTGGRGVDHVVEVGGPGTL-AQSIKAVAPG-GVISLIGFLSGFEAPVLLLPL-LTKGA 278

Query: 321 KGTIFG 326
             T+ G
Sbjct: 279 --TLRG 282

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 57/253 (22%), Positives = 92/253 (36%), Gaps = 36/253 (14%)

Query: 70  VLGHEGVGMVESIGDEV------KELKEGDIVIPTFIGECRECENCTSEMANLCL---KY 120
           VLGHE VG V ++            L+ G  V+ +    C  C  C   +   C    KY
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY 60

Query: 121 ---PFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFL 177
                     +  G +          H    +            +V V   +  ++A   
Sbjct: 61  GHEALDSGWPLSGGYAE---------HCHLPAGTA---------IVPVPDDLPDAVAAPA 102

Query: 178 SCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG 237
            C  ++   A      + KG  V V G G +GL     A   GAA+++  D +P R++  
Sbjct: 103 GCATATVMAALEAAGDL-KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA 161

Query: 238 EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVM 297
            +FG T    P+       +E    + +G GVD   E +G  + +   LE+  +G   V+
Sbjct: 162 LSFGATALAEPEVL-----AERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVL 216

Query: 298 AIGAANEAKVPLN 310
           A        V L+
Sbjct: 217 AGSVFPGGPVALD 229

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 69.8 bits (172), Expect = 2e-13
 Identities = 77/302 (25%), Positives = 119/302 (39%), Gaps = 62/302 (20%)

Query: 17  AVVC--WGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG---FPLPLFPRVL 71
           AVVC   G  E   +EE+  EP    EVR ++  A +   D+L  +G      PL P V 
Sbjct: 3   AVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPL-PFVP 61

Query: 72  GHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDG 131
           G E  G+VE++G+ V   K GD V+                              L   G
Sbjct: 62  GSEVAGVVEAVGEGVTGFKVGDRVV-----------------------------ALTGQG 92

Query: 132 SSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKE 191
                                E +VV A  V  +   +    A  L   Y + + A  + 
Sbjct: 93  G------------------FAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRR 134

Query: 192 FKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
            +++ G +V V G  G VGL  +  A+  G A++I    +  +     A G    I+  D
Sbjct: 135 ARLQPGETVLVLGAAGGVGLAAVQLAKALG-ARVIAAASSEEKLALARALGADHVIDYRD 193

Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANE-AKVP 308
                + E VK +T G GVD  ++  G   +   +L +   G G+++ IG A+ E  ++P
Sbjct: 194 PD---LRERVKALTGGRGVDVVYDPVG-GDVFEASLRSLAWG-GRLLVIGFASGEIPQIP 248

Query: 309 LN 310
            N
Sbjct: 249 AN 250

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 85/307 (27%), Positives = 126/307 (41%), Gaps = 46/307 (14%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATE---------VRFKMLYASICHTDVLSSKGFPLPLF 67
            VV  G G   KVE   ++ PK            V  K++  +IC +D    +G      
Sbjct: 5   GVVYLGPG---KVEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTAPT 61

Query: 68  PRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY----PFT 123
             VLGHE  G V   G +V+ +K GDIV   F   C  C NC      +CL         
Sbjct: 62  GLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGA 121

Query: 124 FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF-----LS 178
            +G +  G     + GQ  Y           MV  A++ +   P  D +L        LS
Sbjct: 122 AYGYVDMGG---WVGGQSEY----------VMVPYADFNLLKFPDRDQALEKIRDLTMLS 168

Query: 179 CGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE 238
             + +G+  A     V  GS+V + G G VGL     A++ GAA +I  D NP R  +  
Sbjct: 169 DIFPTGYHGAVTA-GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQAR 227

Query: 239 AFGM-TDFINPDDEPNKSISELVKEMTHGTGVD-YGFECTG---------VASLISEALE 287
           +FG  T  ++ D    + I +++ E      VD  GFE  G          A++++  +E
Sbjct: 228 SFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLME 287

Query: 288 ATKLGKG 294
            T++G  
Sbjct: 288 VTRVGGA 294

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 69.5 bits (170), Expect = 3e-13
 Identities = 64/276 (23%), Positives = 105/276 (38%), Gaps = 33/276 (11%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKA-TEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEG 75
           +VV   +G   +V E  +   K   +V  K+  + +C +D+          +P  LGHE 
Sbjct: 3   SVVNDTDGIV-RVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGAHYYPITLGHEF 61

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRM 135
            G VE++G  V +L  GD V    +  C  C  C     +LC KY F        GS R 
Sbjct: 62  SGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFI-------GSRRD 114

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
                            EY+VV    +  +   + +    F+    + G  A    F + 
Sbjct: 115 -------------GGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHA----FHLA 156

Query: 196 ---KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP 252
              +G +V + G G +GL  +  A   GA  +  ID N  +    ++ G     N  +  
Sbjct: 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMS 216

Query: 253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEA 288
              I  +++E+     +    E  GV   +  A+E 
Sbjct: 217 APQIQSVLRELRFDQLI---LETAGVPQTVELAIEI 249

Length = 347

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 68.8 bits (168), Expect = 5e-13
 Identities = 78/318 (24%), Positives = 128/318 (40%), Gaps = 51/318 (16%)

Query: 22  GEGEPWKVEEIQVEPPKATEVRFKMLYASICHTD-------VLSSKGFPLPLFPRVLGHE 74
             G+P     +++    A +V  K+    +CHTD       V ++   PL      LGHE
Sbjct: 6   EPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPL-----ALGHE 60

Query: 75  GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSR 134
             G V   G          +++P  I  C ECE C +    +C          MP     
Sbjct: 61  ISGRVIQAGAGAASWIGKAVIVPAVI-PCGECELCKTGRGTICRAQ------KMPGND-- 111

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS------IDLSLAGFLSCGYSSGFGAA 188
             ++G    HI          VV A  +  VD +      + L     ++   ++ + AA
Sbjct: 112 --MQGGFASHI----------VVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAA 159

Query: 189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP 248
            +   ++KG  V V G G VG  ++  A+  GAA ++ ID +P + +  + FG    +NP
Sbjct: 160 VQA-GLKKGDLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGFGADLTLNP 217

Query: 249 DDEPNKSISELVKEMTHGTGVDYG----FECTGVASLISEALEATKLGKGKVMAIG-AAN 303
            D+  + + +L+K      G+       FEC+G       AL     G G ++ +G    
Sbjct: 218 KDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMA 276

Query: 304 EAKVPLN----FPAIALG 317
           + +  L+    F A ALG
Sbjct: 277 KTEYRLSNLMAFHARALG 294

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 70/288 (24%), Positives = 114/288 (39%), Gaps = 44/288 (15%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVK 87
           KVE+++   P   EV  ++  A +   D        +   P + G E  G+VE +GD VK
Sbjct: 15  KVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVKPMPHIPGAEFAGVVEEVGDHVK 74

Query: 88  ELKEGDIVI---PTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYH 144
            +K+GD V+     F G C     C S    LC                 + +     Y 
Sbjct: 75  GVKKGDRVVVYNRVFDGTCDM---CLSGNEMLC------------RNGGIIGVVSNGGY- 118

Query: 145 IFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFG 204
                   EY+VV    + K+  SI   LA  L     + + A  K   +  G +V VFG
Sbjct: 119 -------AEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL-KTAGLGPGETVVVFG 170

Query: 205 L-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEM 263
             G  G+  +  A++ G A++I +     RKD  + FG  + ++ D        E+ +++
Sbjct: 171 ASGNTGIFAVQLAKMMG-AEVIAVS----RKDWLKEFGADEVVDYD--------EVEEKV 217

Query: 264 THGTG-VDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN 310
              T   D      G +S    +L     G G+++  G     +V L+
Sbjct: 218 KEITKMADVVINSLG-SSFWDLSLSVLGRG-GRLVTFGTLTGGEVKLD 263

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 58/297 (19%), Positives = 100/297 (33%), Gaps = 88/297 (29%)

Query: 22  GEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDV-----LSSKGFPLPLFPRVLGHEGV 76
           G  E  ++ ++    P   EV  K+  A +   D+     L    FPL   P + GH+  
Sbjct: 10  GGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLT-LPLIPGHDVA 68

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMS 136
           G+V ++G  V   K GD V                                   G +  +
Sbjct: 69  GVVVAVGPGVTGFKVGDEVF----------------------------------GMTPFT 94

Query: 137 IRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID------LSLAGFLSCGYSSGFGAAW- 189
             G             EY+VV A+ +     ++       L LAG            AW 
Sbjct: 95  RGG----------AYAEYVVVPADELALKPANLSFEEAAALPLAG----------LTAWQ 134

Query: 190 ---KEFKVEKGSSVAVFG-LGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE---AFGM 242
              +   ++ G +V + G  G VG   +  A+ +G A++I            +   + G 
Sbjct: 135 ALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARG-ARVIAT----ASAANADFLRSLGA 189

Query: 243 TDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAI 299
            + I+             +      GVD   +  G  +L + +L   K G G++++I
Sbjct: 190 DEVIDYTK-------GDFERAAAPGGVDAVLDTVGGETL-ARSLALVKPG-GRLVSI 237

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 61/295 (20%), Positives = 98/295 (33%), Gaps = 59/295 (20%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSK----GFPLPLFPR--- 69
           A V      P  V ++    P   +V  K+L   IC +D+ ++            P    
Sbjct: 3   AAVF--RDGPLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMD 60

Query: 70  -----VLGHEGVGMVESIG-DEVKELKEGDIV--IP-TFIGECRECENCTSEMANLCLKY 120
                VLGHE  G V   G    ++LK G  V  +P    G+   C              
Sbjct: 61  LGADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASC-------------- 106

Query: 121 PFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---L 177
                   P G +                   EYM++    +++V   + +  A     L
Sbjct: 107 GIGLSPEAPGGYA-------------------EYMLLSEALLLRVPDGLSMEDAALTEPL 147

Query: 178 SCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG 237
           + G       A +  ++  G    V G G +GL V+   + +G   I+  D +P R+   
Sbjct: 148 AVGLH-----AVRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALA 202

Query: 238 EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLG 292
            A G    ++P  +   +          G      FEC G   LI + +E    G
Sbjct: 203 LAMGADIVVDPAADSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG 257

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 49/208 (23%), Positives = 76/208 (36%), Gaps = 51/208 (24%)

Query: 22  GEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLGHEGVGMV 79
           G  E  KV E  +  P A EV  K+  + +   DV   +G     P  P   G++ VG V
Sbjct: 10  GGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRV 69

Query: 80  ESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRG 139
           +++G  V   + GD V                               L   G +      
Sbjct: 70  DALGSGVTGFEVGDRVA-----------------------------ALTRVGGN------ 94

Query: 140 QKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSS 199
                        EY+ +DA Y+V V   +D + A  L   Y + +    +  KV  G  
Sbjct: 95  ------------AEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQR 142

Query: 200 VAVFGL-GAVGLGVMDRARIQGAAKIIG 226
           V + G  G VG  +++ A + G A++ G
Sbjct: 143 VLIHGASGGVGQALLELALLAG-AEVYG 169

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 87/337 (25%), Positives = 124/337 (36%), Gaps = 84/337 (24%)

Query: 15  AAAVVCWGEGEPWKV---EEIQVEPPKAT-EVRFKMLYASICHTDVLSSKG-FPL----- 64
           A A+V    GEP +V   E  ++ PP    EV  KML A I   D+   +G +P+     
Sbjct: 1   AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTT 60

Query: 65  PLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF 124
           P  P V G+EGVG V  +G  VK LK GD VIP                           
Sbjct: 61  PEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIP--------------------------- 93

Query: 125 HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSG 184
                         G          T   + VV A+ ++KV   +D   A  LS    + 
Sbjct: 94  ---------LRPGLG----------TWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCT- 133

Query: 185 FGAAW---KEF-KVEKGSSVAVFG-LGAVGLGVMDRARIQGAAKIIGI--DKNPCRKDKG 237
              A+   ++F K++ G  V   G   AVG  V+  A++ G  K I +  D+    + K 
Sbjct: 134 ---AYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLG-IKTINVVRDRPDLEELKE 189

Query: 238 E--AFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGK 295
              A G    +  ++  +   +EL+K    G        C G  S  +  L A  L  G 
Sbjct: 190 RLKALGADHVLTEEELRSLLATELLKSAP-GGRPKLALNCVGGKS--ATEL-ARLLSPGG 245

Query: 296 VMAI-GAANEAKVPLNFPAIALGRNLKGTIFGGIKTK 331
            M   G    +  P+  P   L       IF  I  +
Sbjct: 246 TMVTYGGM--SGQPVTVPTSLL-------IFKDITLR 273

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 29  VEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPRVLGHEGVGMVESIGDEVK 87
           +EE  +  P A EVR K+  A IC +D    +G  P   +PRV+GHE  G+++++G+ V 
Sbjct: 14  IEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVD 73

Query: 88  ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDG--SSRMSIRGQKLYHI 145
             + G+ V    +  C  C  C+    N+C        G+  DG  S    +  +  + I
Sbjct: 74  AARIGERVAVDPVISCGHCYPCSIGKPNVCTS--LVVLGVHRDGGFSEYAVVPAKNAHRI 131

Query: 146 -----FTCSTMTEYMVVDANYVVKVDP 167
                   + M E   + AN   +  P
Sbjct: 132 PDAIADQYAVMVEPFTIAANVTGRTGP 158

Length = 339

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 73/299 (24%), Positives = 112/299 (37%), Gaps = 58/299 (19%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG--FPLPLFPRVLGHEGVGMVESIGDE 85
           ++EE+ V  P A EV  ++    +   D +  +G     P  P  LG+E  G+VE++G  
Sbjct: 16  RIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAG 75

Query: 86  VKELKEGD--IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLY 143
           V     GD   VIP                     +Y                       
Sbjct: 76  VTGFAVGDRVSVIPAA-------------DLG---QYG---------------------- 97

Query: 144 HIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVF 203
                 T  EY +V A  VVK+   +    A  L   Y + +GA  +   +  G SV + 
Sbjct: 98  ------TYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLIT 151

Query: 204 GL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKE 262
               +VGL  +  A   G A +I   +   ++D   A G    I  D+E    +   V  
Sbjct: 152 AASSSVGLAAIQIANAAG-ATVIATTRTSEKRDALLALGAAHVIVTDEED---LVAEVLR 207

Query: 263 MTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPA-IALGRNL 320
           +T G GVD  F+  G     ++  +A   G G ++  GA +    P  FP   AL ++L
Sbjct: 208 ITGGKGVDVVFDPVG-GPQFAKLADALAPG-GTLVVYGALSGEPTP--FPLKAALKKSL 262

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 58.2 bits (142), Expect = 1e-09
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 28 KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIGDEV 86
          + E++ V  P   EV  +     +   D     G +PLPL P VLG EG G+VE++G  V
Sbjct: 15 EYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPLPL-PFVLGVEGAGVVEAVGPGV 73

Query: 87 KELKEGDIV 95
             K GD V
Sbjct: 74 TGFKVGDRV 82

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 75/301 (24%), Positives = 104/301 (34%), Gaps = 65/301 (21%)

Query: 17  AVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG--FPLPLFPRVLG 72
           AV   G G     K+ E     PK  +V  K+  A +   D L  +G   P P    +LG
Sbjct: 4   AVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILG 63

Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
            E  G VE +G +VK  KEGD V+                              L+P G 
Sbjct: 64  LEVAGYVEDVGSDVKRFKEGDRVM-----------------------------ALLPGG- 93

Query: 133 SRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
                               EY V    +V+ +        A  +   + + +    K  
Sbjct: 94  -----------------GYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHG 136

Query: 193 KVEKGSSVAVF-GLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE---AFGMTDFINP 248
            V+KG SV +  G   VG      A   GAA II        ++K +          I  
Sbjct: 137 DVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT----SSEEKVDFCKKLAAIILIRY 192

Query: 249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGK-GKVMAIGAANEAKV 307
            DE   +    VK++T   GV+   +C G  S +SE  E   L   GK +  G    AKV
Sbjct: 193 PDEEGFAPK--VKKLTGEKGVNLVLDCVG-GSYLSETAEV--LAVDGKWIVYGFMGGAKV 247

Query: 308 P 308
            
Sbjct: 248 E 248

Length = 334

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 66/266 (24%), Positives = 100/266 (37%), Gaps = 67/266 (25%)

Query: 22  GEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSK-GFPLPLFPRVLGHEGVGMVE 80
           G      +EEI++  P A EV  K+  A +   D      G P   +P V G +G G+V 
Sbjct: 10  GAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVV 69

Query: 81  SIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHG-LMPDGSSRMSIRG 139
           ++G +V   K GD V                            +H  L   GS       
Sbjct: 70  AVGAKVTGWKVGDRVA---------------------------YHASLARGGS------- 95

Query: 140 QKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW----KEFKVE 195
                        EY VVDA  V+ +  S+    A  L C   +G   A+    K+ ++E
Sbjct: 96  -----------FAEYTVVDARAVLPLPDSLSFEEAAALPC---AGL-TAYQALFKKLRIE 140

Query: 196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK---DKGEAFGMTDFINPDDE 251
            G ++ + G  G VG   +  A+  G   I       C K   +  ++ G    I   D 
Sbjct: 141 AGRTILITGGAGGVGSFAVQLAKRAGLRVIT-----TCSKRNFEYVKSLGADHVI---DY 192

Query: 252 PNKSISELVKEMTHGTGVDYGFECTG 277
            ++ + E +KE+T G GVD   +  G
Sbjct: 193 NDEDVCERIKEITGGRGVDAVLDTVG 218

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 64/262 (24%), Positives = 93/262 (35%), Gaps = 38/262 (14%)

Query: 68  PRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGL 127
           P VLGHE +G +         LKEG  V       C  C+ C S   N C          
Sbjct: 60  PMVLGHEVIGKIVHSDS--SGLKEGQTVAINPSKPCGHCKYCLSHNENQC---------- 107

Query: 128 MPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGA 187
                + M   G  +Y        T Y VVD    +      D  +  F     +     
Sbjct: 108 -----TTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMAF-----AEPLAV 157

Query: 188 AWKEFKVE---KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD 244
           A          +G  V V G+G +G  ++   +  GAA+I+  D +P         G   
Sbjct: 158 AIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK 217

Query: 245 FINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE 304
            +NP ++      +L          D  FE +G  S I+  LE T+  KG ++ +G    
Sbjct: 218 LVNPQND------DLDHYKAEKGYFDVSFEVSGHPSSINTCLEVTR-AKGVMVQVGM--- 267

Query: 305 AKVPLNFPA---IALGRNLKGT 323
              P  FP    I    +LKG+
Sbjct: 268 GGAPPEFPMMTLIVKEISLKGS 289

Length = 343

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 24 GEPWKVEEIQVEP---PKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLGHEGVGM 78
          G+P  V EI   P   P A EV  +   + I + D+ + +G     P  P + G E VG+
Sbjct: 10 GDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGV 69

Query: 79 VESIGDEVKELKEG 92
          V+++G+ VK L+ G
Sbjct: 70 VDAVGEGVKGLQVG 83

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 19  VCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPRVLGHEGVG 77
           +    G   +VE++    P   E   ++L A IC+TD+   KG+ P   FP V GHE VG
Sbjct: 4   LVLDGGLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVG 60

Query: 78  MVESIGDE--VKELKEGDIVIPTFIGECRECENCTSEMANLC 117
           +VE   +   V +   G+I I      C  CE C   +   C
Sbjct: 61  IVEEGPEAELVGKRVVGEINIA-----CGRCEYCRRGLYTHC 97

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 66/313 (21%), Positives = 109/313 (34%), Gaps = 66/313 (21%)

Query: 15  AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTD--VLSSKGFPLPLFPRVLG 72
           A  +  +G  E +++ E+    P   +V  ++  + +   D  +        P  P +LG
Sbjct: 3   ALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILG 62

Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
            +  G+VE++G+ V   + GD V             C   +  L         G      
Sbjct: 63  CDVAGVVEAVGEGVTRFRVGDEVY-----------GCAGGLGGL--------QG------ 97

Query: 133 SRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
                            ++ EY VVDA  +     ++ +  A  L          AW+  
Sbjct: 98  -----------------SLAEYAVVDARLLALKPANLSMREAAALPL----VGITAWEGL 136

Query: 193 ----KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGID-KNPCRKDKG---EAFGMTD 244
                V+ G +V + G GA G+G +    +Q  AK  G         +K     + G   
Sbjct: 137 VDRAAVQAGQTVLIHG-GAGGVGHV---AVQ-LAKAAGARVYATASSEKAAFARSLGADP 191

Query: 245 FINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE 304
            I       +++ E V E T G G D  F+  G  +L   + EA  L    V  +G A  
Sbjct: 192 IIYYR----ETVVEYVAEHTGGRGFDVVFDTVGGETL-DASFEAVALYGRVVSILGGATH 246

Query: 305 AKVPLNFPAIALG 317
              PL+F      
Sbjct: 247 DLAPLSFRNATYS 259

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 61/290 (21%), Positives = 106/290 (36%), Gaps = 58/290 (20%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGH-EGVGMVESIGDE 85
           ++ ++ V  P   EV  ++  + +   D     G +P       +   +G G+VE++G+ 
Sbjct: 16  RLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEG 75

Query: 86  VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHI 145
           V  LK GD V  T +G  R                     G                   
Sbjct: 76  VDGLKVGDRVWLTNLGWGRR-------------------QG------------------- 97

Query: 146 FTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFG- 204
               T  EY+VV A+ +V +   +       L     + + A +     + G +V V G 
Sbjct: 98  ----TAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGG 153

Query: 205 LGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE---AFGMTDFINPDDEPNKSISELVK 261
            GAVG   +  AR  G A++I    +    +  E     G     N   E    +++ + 
Sbjct: 154 SGAVGHAAVQLARWAG-ARVIATASSA---EGAELVRQAGADAVFNYRAE---DLADRIL 206

Query: 262 EMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN-EAKVPLN 310
             T G GVD   E     +L ++ L+    G G+++  G+      +P+N
Sbjct: 207 AATAGQGVDVIIEVLANVNL-AKDLDVLAPG-GRIVVYGSGGLRGTIPIN 254

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 19/69 (27%), Positives = 29/69 (42%)

Query: 28 KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVK 87
           V ++ V  P   EV  K+   ++   D        +P +P +LG +  G V  +G  V 
Sbjct: 15 VVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFIPSYPAILGCDFAGTVVEVGSGVT 74

Query: 88 ELKEGDIVI 96
            K GD V 
Sbjct: 75 RFKVGDRVA 83

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 18 VVCW----GEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPL----FPR 69
          VV       E       E+ +  PK  EV  K+  AS+   D    +G P  L    FP 
Sbjct: 1  VVYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPP 60

Query: 70 VLGHEGVGMVESIGDEVKELKEGDIV 95
          + G +  G V ++G  V   K GD V
Sbjct: 61 IPGMDFAGEVVAVGSGVTRFKVGDEV 86

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 28 KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLGHEGVGMVESIGDE 85
          KVE+  +  P + EVR ++    +   D+++ +G     P  P V G E  G VE++G+ 
Sbjct: 15 KVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEG 74

Query: 86 VKELKEGDIVI 96
          VK+ K GD V+
Sbjct: 75 VKDFKVGDRVM 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 56/256 (21%), Positives = 93/256 (36%), Gaps = 52/256 (20%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIGDEV 86
           K+ EI +  PK   V  ++    +  +++ + +G  P   FPRVLG E VG VE      
Sbjct: 16  KLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEE--APG 73

Query: 87  KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIF 146
                G  V  T +G           M         TF     DGS          Y   
Sbjct: 74  GTFTPGQRVA-TAMG----------GMG-------RTF-----DGS----------Y--- 97

Query: 147 TCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFG-L 205
                 EY +V    V  +D  +  +    L   Y + +G+ ++   ++ G ++ + G  
Sbjct: 98  -----AEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGT 152

Query: 206 GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTH 265
            +VGL  +  A+  G A +    ++P R    +  G  + +  D    + +         
Sbjct: 153 SSVGLAALKLAKALG-ATVTATTRSPERAALLKELGADEVVIDDGAIAEQL------RAA 205

Query: 266 GTGVDYGFECTGVASL 281
             G D   E  G A+L
Sbjct: 206 PGGFDKVLELVGTATL 221

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 33  QVEPPKATEVRFKMLYASICHTDVLSSKG-FP-LPLFPRVLGHEGVGMVESIGDEVKELK 90
           +V PP   EVR ++   S+   D+L  +G +P +P +P   G E  G+V ++G  V  L 
Sbjct: 1   EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLA 60

Query: 91  EGDIVIPTFIGE 102
            GD VI    GE
Sbjct: 61  VGDEVI-AGTGE 71

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 29 VEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFP--LPLFPRVLGHEGVGMVESIGDEV 86
          +  + ++     +V  ++ Y+S+ + D L++ G       +P   G +  G V S   + 
Sbjct: 17 LRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVS--SDD 74

Query: 87 KELKEGDIVIPT 98
             +EGD V+ T
Sbjct: 75 PRFREGDEVLVT 86

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 28 KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG--FPLPLFPRVLGHEGVGMVESIGDE 85
           + ++ V  P   EV  K  +  I  +D+  + G   P    P   G EGVG V ++G+ 
Sbjct: 19 SIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEG 78

Query: 86 VKELKEGDIV 95
          V + K GD V
Sbjct: 79 VTDFKVGDAV 88

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 41 EVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD 93
          EV  ++  A +   DVL + G  LP     LG E  G+V  +G  V  LK GD
Sbjct: 2  EVEVEVKAAGLNFRDVLVALG-LLPGDETPLGLECSGIVTRVGSGVTGLKVGD 53

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 25 EPWKVEEIQVEPPKATE----VRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVE 80
          +P  + +I++  P        VR + +  +   T V +         P++LG +  G+VE
Sbjct: 14 DPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQ-PKILGWDASGVVE 72

Query: 81 SIGDEVKELKEGDIV 95
          ++G EV   K GD V
Sbjct: 73 AVGSEVTLFKVGDEV 87

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 17 AVVCWGEGEPWKVEEIQVEP-----PKATEVRFKMLYASICHTDVLSSKG-FPLP-LFPR 69
          A++    G+P +V+E+ +       P   EV  K+  A I  +D+   KG +      P 
Sbjct: 3  ALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPV 62

Query: 70 VLGHEGVGMVESIGDEV 86
            G EG G V + G   
Sbjct: 63 PPGFEGSGTVVAAGGGP 79

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	100.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	100.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	100.0
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	100.0
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	100.0
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
PTZ00354	334	alcohol dehydrogenase; Provisional	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	100.0
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	100.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	100.0
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	100.0
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	100.0
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	100.0
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	100.0
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	100.0
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	100.0
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	100.0
cd08252	336	AL_MDR Arginate lyase and other MDR family members	100.0
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	100.0
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	100.0
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.98
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.98
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.97
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.97
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.97
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.97
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.97
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.97
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.97
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.97
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.97
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.97
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.96
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.96
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.96
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.96
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.95
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.92
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.9
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.89
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.87
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.75
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.27
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.1
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.61
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.51
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.43
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.4
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.3
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.27
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.26
PLN02494	477	adenosylhomocysteinase	98.24
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.07
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.94
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.94
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.9
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.89
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.88
PRK08324	681	short chain dehydrogenase; Validated	97.82
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.8
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.74
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.73
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.72
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.65
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	97.6
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	97.58
PRK05993	277	short chain dehydrogenase; Provisional	97.46
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.43
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.41
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.4
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.39
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.34
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.34
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	97.31
PRK05693	274	short chain dehydrogenase; Provisional	97.28
TIGR00438	188	rrmJ cell division protein FtsJ.	97.27
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.25
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.22
PRK06182	273	short chain dehydrogenase; Validated	97.17
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.11
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.06
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.05
PRK05872	296	short chain dehydrogenase; Provisional	97.05
PLN03209	576	translocon at the inner envelope of chloroplast su	97.04
PRK12742	237	oxidoreductase; Provisional	97.03
PRK08177	225	short chain dehydrogenase; Provisional	97.02
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	96.97
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.96
PRK04148	134	hypothetical protein; Provisional	96.96
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.95
PRK07326	237	short chain dehydrogenase; Provisional	96.93
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.92
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.92
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.92
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.89
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.88
PRK12939	250	short chain dehydrogenase; Provisional	96.88
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.87
PRK14967	223	putative methyltransferase; Provisional	96.86
PRK07109	334	short chain dehydrogenase; Provisional	96.83
PRK07806	248	short chain dehydrogenase; Provisional	96.83
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.82
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.82
PRK08265	261	short chain dehydrogenase; Provisional	96.81
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.8
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.77
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.77
PRK06139	330	short chain dehydrogenase; Provisional	96.77
PRK06500	249	short chain dehydrogenase; Provisional	96.76
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.75
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.74
PRK07576	264	short chain dehydrogenase; Provisional	96.73
PRK07060	245	short chain dehydrogenase; Provisional	96.72
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.71
PRK08267	260	short chain dehydrogenase; Provisional	96.69
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.68
PRK08618	325	ornithine cyclodeaminase; Validated	96.68
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.67
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.66
PRK08017	256	oxidoreductase; Provisional	96.66
PRK07825	273	short chain dehydrogenase; Provisional	96.66
PRK06057	255	short chain dehydrogenase; Provisional	96.65
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.64
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.63
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.63
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	96.6
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	96.59
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.58
PLN00203	519	glutamyl-tRNA reductase	96.55
PRK12828	239	short chain dehydrogenase; Provisional	96.55
PRK08589	272	short chain dehydrogenase; Validated	96.55
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.54
PRK08339	263	short chain dehydrogenase; Provisional	96.54
PRK12829	264	short chain dehydrogenase; Provisional	96.54
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.53
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.52
PRK08628	258	short chain dehydrogenase; Provisional	96.52
PRK07340	304	ornithine cyclodeaminase; Validated	96.51
PRK06949	258	short chain dehydrogenase; Provisional	96.48
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.47
PRK07904	253	short chain dehydrogenase; Provisional	96.46
PRK09186	256	flagellin modification protein A; Provisional	96.46
PRK06398	258	aldose dehydrogenase; Validated	96.45
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.45
PRK06484	520	short chain dehydrogenase; Validated	96.44
PRK07831	262	short chain dehydrogenase; Provisional	96.44
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.43
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.43
PRK06128	300	oxidoreductase; Provisional	96.43
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.42
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.42
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	96.41
PRK06196	315	oxidoreductase; Provisional	96.39
PRK06101	240	short chain dehydrogenase; Provisional	96.39
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.38
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.37
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.37
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.36
PRK07402	196	precorrin-6B methylase; Provisional	96.36
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.35
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	96.35
PRK06180	277	short chain dehydrogenase; Provisional	96.35
PRK07832	272	short chain dehydrogenase; Provisional	96.35
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.34
PRK06841	255	short chain dehydrogenase; Provisional	96.34
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.34
PRK07814	263	short chain dehydrogenase; Provisional	96.33
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.32
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.32
PRK09072	263	short chain dehydrogenase; Provisional	96.31
PRK05867	253	short chain dehydrogenase; Provisional	96.31
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.3
PRK06953	222	short chain dehydrogenase; Provisional	96.29
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.29
PRK05866	293	short chain dehydrogenase; Provisional	96.29
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.29
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.29
PRK08862	227	short chain dehydrogenase; Provisional	96.25
PLN02780	320	ketoreductase/ oxidoreductase	96.25
PRK09242	257	tropinone reductase; Provisional	96.22
PRK06484	520	short chain dehydrogenase; Validated	96.21
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.21
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.21
PRK07677	252	short chain dehydrogenase; Provisional	96.19
COG2910	211	Putative NADH-flavin reductase [General function p	96.19
PRK06701	290	short chain dehydrogenase; Provisional	96.18
PRK06940	275	short chain dehydrogenase; Provisional	96.17
PRK11207	197	tellurite resistance protein TehB; Provisional	96.17
CHL00194	317	ycf39 Ycf39; Provisional	96.16
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.15
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.15
PRK08263	275	short chain dehydrogenase; Provisional	96.14
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.14
PRK07024	257	short chain dehydrogenase; Provisional	96.14
PRK06483	236	dihydromonapterin reductase; Provisional	96.12
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.11
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.1
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	96.1
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.1
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.09
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.09
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.09
PRK00811	283	spermidine synthase; Provisional	96.09
PRK07062	265	short chain dehydrogenase; Provisional	96.08
PRK05717	255	oxidoreductase; Validated	96.08
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.07
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	96.04
PRK07478	254	short chain dehydrogenase; Provisional	96.04
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.04
PRK09291	257	short chain dehydrogenase; Provisional	96.03
PRK10538	248	malonic semialdehyde reductase; Provisional	96.02
PLN02366	308	spermidine synthase	96.02
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	96.01
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.01
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.0
PRK06153	393	hypothetical protein; Provisional	96.0
PRK08340	259	glucose-1-dehydrogenase; Provisional	95.99
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.98
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.97
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.96
PRK07985	294	oxidoreductase; Provisional	95.96
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.96
PRK06194	287	hypothetical protein; Provisional	95.94
PRK12747	252	short chain dehydrogenase; Provisional	95.93
PRK08223	287	hypothetical protein; Validated	95.93
KOG0725	270	consensus Reductases with broad range of substrate	95.93
PRK07574	385	formate dehydrogenase; Provisional	95.92
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	95.91
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.91
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.9
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.9
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	95.89
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	95.89
PRK05884	223	short chain dehydrogenase; Provisional	95.89
PRK07063	260	short chain dehydrogenase; Provisional	95.87
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	95.87
PRK07890	258	short chain dehydrogenase; Provisional	95.87
PRK05854	313	short chain dehydrogenase; Provisional	95.86
PLN03139	386	formate dehydrogenase; Provisional	95.86
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	95.85
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.85
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.84
PRK06125	259	short chain dehydrogenase; Provisional	95.82
PRK12367	245	short chain dehydrogenase; Provisional	95.81
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	95.81
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	95.81
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.79
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	95.79
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	95.78
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.78
PRK06198	260	short chain dehydrogenase; Provisional	95.77
PRK07774	250	short chain dehydrogenase; Provisional	95.77
PRK08264	238	short chain dehydrogenase; Validated	95.77
PRK06138	252	short chain dehydrogenase; Provisional	95.76
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.76
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.76
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	95.76
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	95.75
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	95.75
PRK08219	227	short chain dehydrogenase; Provisional	95.74
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.74
PRK07454	241	short chain dehydrogenase; Provisional	95.72
PRK08703	239	short chain dehydrogenase; Provisional	95.72
PRK08317	241	hypothetical protein; Provisional	95.71
PRK06197	306	short chain dehydrogenase; Provisional	95.71
PRK12746	254	short chain dehydrogenase; Provisional	95.7
PRK07035	252	short chain dehydrogenase; Provisional	95.7
PRK06172	253	short chain dehydrogenase; Provisional	95.69
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.69
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	95.68
PRK07417	279	arogenate dehydrogenase; Reviewed	95.68
PRK12937	245	short chain dehydrogenase; Provisional	95.67
PRK06141	314	ornithine cyclodeaminase; Validated	95.66
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	95.66
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	95.66
PRK08643	256	acetoin reductase; Validated	95.64
PRK01581	374	speE spermidine synthase; Validated	95.63
PRK07577	234	short chain dehydrogenase; Provisional	95.62
PRK04457	262	spermidine synthase; Provisional	95.61
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.6
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.6
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.59
PLN02253	280	xanthoxin dehydrogenase	95.58
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.58
PRK06720	169	hypothetical protein; Provisional	95.56
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.56
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.55
PRK05876	275	short chain dehydrogenase; Provisional	95.55
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.53
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	95.53
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.52
PRK07074	257	short chain dehydrogenase; Provisional	95.52
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	95.52
PRK07791	286	short chain dehydrogenase; Provisional	95.51
PRK06114	254	short chain dehydrogenase; Provisional	95.49
PRK08328	231	hypothetical protein; Provisional	95.48
PRK05875	276	short chain dehydrogenase; Provisional	95.47
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.46
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.43
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	95.43
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.42
PRK06179	270	short chain dehydrogenase; Provisional	95.41
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	95.41
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	95.41
PRK08251	248	short chain dehydrogenase; Provisional	95.4
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	95.4
PLN02256	304	arogenate dehydrogenase	95.38
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	95.37
PRK07856	252	short chain dehydrogenase; Provisional	95.37
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.37
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.36
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	95.36
PRK07411	390	hypothetical protein; Validated	95.34
PRK08303	305	short chain dehydrogenase; Provisional	95.34
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.33
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.33
PRK06181	263	short chain dehydrogenase; Provisional	95.33
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	95.31
PRK07067	257	sorbitol dehydrogenase; Provisional	95.31
PLN02244	340	tocopherol O-methyltransferase	95.31
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	95.3
COG4122	219	Predicted O-methyltransferase [General function pr	95.3
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.3
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.28
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.25
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.25
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	95.24
PRK08226	263	short chain dehydrogenase; Provisional	95.24
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.24
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.24
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	95.23
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.23
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	95.23
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.23
PRK06482	276	short chain dehydrogenase; Provisional	95.22
PRK08291	330	ectoine utilization protein EutC; Validated	95.22
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.21
PRK06914	280	short chain dehydrogenase; Provisional	95.21
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.18
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.17
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.15
PRK04266	226	fibrillarin; Provisional	95.13
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.13
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	95.13
PRK14982	340	acyl-ACP reductase; Provisional	95.1
PRK07102	243	short chain dehydrogenase; Provisional	95.09
PRK08278	273	short chain dehydrogenase; Provisional	95.08
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	95.08
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.06
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.05
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.05
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.04
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.0
PRK12743	256	oxidoreductase; Provisional	94.99
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	94.98
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.96
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	94.96
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	94.94
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	94.93
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.91
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.9
PRK13243	333	glyoxylate reductase; Reviewed	94.89
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	94.87
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.86
PRK10669	558	putative cation:proton antiport protein; Provision	94.86
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	94.85
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.84
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	94.84
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	94.83
PLN02928	347	oxidoreductase family protein	94.83
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.81
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	94.81
PRK06523	260	short chain dehydrogenase; Provisional	94.8
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	94.79
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	94.78
PRK10258	251	biotin biosynthesis protein BioC; Provisional	94.78
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	94.77
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	94.77
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.76
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	94.76
PLN03075	296	nicotianamine synthase; Provisional	94.75
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	94.74
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.73
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	94.72
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.72
TIGR00452	314	methyltransferase, putative. Known examples to dat	94.71
PRK08655	437	prephenate dehydrogenase; Provisional	94.69
PRK05650	270	short chain dehydrogenase; Provisional	94.68
PRK06849	389	hypothetical protein; Provisional	94.68
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	94.63
PRK07578	199	short chain dehydrogenase; Provisional	94.63
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.62
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.62
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	94.6
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.6
PRK00536	262	speE spermidine synthase; Provisional	94.59
PLN02476	278	O-methyltransferase	94.58
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	94.57
PRK13303	265	L-aspartate dehydrogenase; Provisional	94.57
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.54
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.54
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.53
PRK13255	218	thiopurine S-methyltransferase; Reviewed	94.52
PLN02233	261	ubiquinone biosynthesis methyltransferase	94.51
PLN02823	336	spermine synthase	94.5
PLN00016	378	RNA-binding protein; Provisional	94.5
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.49
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	94.48
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.48
PRK03612	521	spermidine synthase; Provisional	94.47
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	94.46
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.44
PRK05855	582	short chain dehydrogenase; Validated	94.4
PRK07775	274	short chain dehydrogenase; Provisional	94.39

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=2.7e-61  Score=440.20  Aligned_cols=286  Identities=32%  Similarity=0.500  Sum_probs=268.1

Q ss_pred             cceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           12 IYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      +++|||++++++++++++++++.|+|+++||+|+|+|+|+|++|++ +.|.++...+|+++|||.+|+|+++|++|++|+
T Consensus         1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k   80 (339)
T COG1064           1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK   80 (339)
T ss_pred             CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence            5799999999999999999999999999999999999999999999 999999988999999999999999999999999


Q ss_pred             CCCEEEe-ecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCC
Q 043260           91 EGDIVIP-TFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSI  169 (332)
Q Consensus        91 vGdrV~~-~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~  169 (332)
                      +||||.+ ++..+|++|.+|++|+|++|++....  |++.+|+                  ||||+++++++++++|+++
T Consensus        81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~--gy~~~GG------------------yaeyv~v~~~~~~~iP~~~  140 (339)
T COG1064          81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKIT--GYTTDGG------------------YAEYVVVPARYVVKIPEGL  140 (339)
T ss_pred             CCCEEEecCccCCCCCCccccCcccccCCCcccc--ceeecCc------------------ceeEEEEchHHeEECCCCC
Confidence            9999988 89999999999999999999998877  8888886                  9999999999999999999


Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      ++++||.+.|+..|+|+++ +..+++||++|+|+|.|++|++++|+|+++|+ +|++++++++|+++++++|+|++++..
T Consensus       141 d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~~~  218 (339)
T COG1064         141 DLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINSS  218 (339)
T ss_pred             ChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEEcC
Confidence            9999999999999999999 56899999999999999999999999999997 999999999999999999999999987


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC-CCcccCChHhHhc-CcEEEEeeccc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN-EAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~-~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      +   .+..+.+++.     +|++||+++ +.++++.++.|+++ |+++.+|.+. .....++...++. +++|.||..++
T Consensus       219 ~---~~~~~~~~~~-----~d~ii~tv~-~~~~~~~l~~l~~~-G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~  288 (339)
T COG1064         219 D---SDALEAVKEI-----ADAIIDTVG-PATLEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT  288 (339)
T ss_pred             C---chhhHHhHhh-----CcEEEECCC-hhhHHHHHHHHhcC-CEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCC
Confidence            6   6676777653     999999999 78999999999998 9999999995 4556677777776 99999999998


Q ss_pred             cc
Q 043260          328 IK  329 (332)
Q Consensus       328 ~~  329 (332)
                      +.
T Consensus       289 ~~  290 (339)
T COG1064         289 RA  290 (339)
T ss_pred             HH
Confidence            64

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=3e-58  Score=412.20  Aligned_cols=314  Identities=42%  Similarity=0.738  Sum_probs=300.0

Q ss_pred             ceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           13 YYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        13 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      |++||++..++++||+++++++++|++||||||+.++|+|++|.. +.|..|.. +|.++|||.+|+|++||++|+.++|
T Consensus         1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp   79 (366)
T COG1062           1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP   79 (366)
T ss_pred             CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence            578999999999999999999999999999999999999999999 99998876 9999999999999999999999999


Q ss_pred             CCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           92 GDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        92 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      ||+|+..+..+||+|.+|++|.+|.|+....+. .|...+|+.+++-++.+.+|.++.++|+||.+++..+++|++++.+
T Consensus        80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p  159 (366)
T COG1062          80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAP  159 (366)
T ss_pred             CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCC
Confidence            999999999999999999999999999886554 7889999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      ++.++++.|...|.+.++.+.+++++|++|.|.|.|++|++++|-|+..|+.+||++|.+++|+++++++|+++++|.++
T Consensus       160 ~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~  239 (366)
T COG1062         160 LEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKE  239 (366)
T ss_pred             ccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchh
Confidence            99999999999999999989999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCc-hHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeecccc
Q 043260          251 EPNK-SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIFGGI  328 (332)
Q Consensus       251 ~~~~-~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~~  328 (332)
                         . +..+.+.++|++ |+|.+||++|+...+.++++++.++ |+.+++|.... +.+++++..|....+++|+.+|+.
T Consensus       240 ---~~~vv~~i~~~T~g-G~d~~~e~~G~~~~~~~al~~~~~~-G~~v~iGv~~~~~~i~~~~~~lv~gr~~~Gs~~G~~  314 (366)
T COG1062         240 ---VDDVVEAIVELTDG-GADYAFECVGNVEVMRQALEATHRG-GTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGA  314 (366)
T ss_pred             ---hhhHHHHHHHhcCC-CCCEEEEccCCHHHHHHHHHHHhcC-CeEEEEecCCCCceeecChHHeeccceEEEEeecCC
Confidence               5 699999999998 9999999999999999999999998 99999999887 778888888888999999999988


Q ss_pred             ccCC
Q 043260          329 KTKS  332 (332)
Q Consensus       329 ~~~~  332 (332)
                      ++++
T Consensus       315 ~p~~  318 (366)
T COG1062         315 RPRS  318 (366)
T ss_pred             cccc
Confidence            8763

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.2e-56  Score=391.74  Aligned_cols=320  Identities=48%  Similarity=0.805  Sum_probs=304.1

Q ss_pred             cccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCC
Q 043260           10 LKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        10 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      ..+.++||+++.++++||.++++.+++|+..||+||+.++++|++|.. +.|..+...+|.++|||++|+|+++|++|++
T Consensus         3 gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~   82 (375)
T KOG0022|consen    3 GKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTT   82 (375)
T ss_pred             CCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCccc
Confidence            457899999999999999999999999999999999999999999999 9998888899999999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCcccc--ccccCCCCCcccccccceecccccCCceeeEEecCCceEEcC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF--HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD  166 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~--~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP  166 (332)
                      +++||+|.......|+.|.+|+++..|.|+......  .++..||..++.-.|+++||+.+..+|+||.+++...+++++
T Consensus        83 vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId  162 (375)
T KOG0022|consen   83 VKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKID  162 (375)
T ss_pred             cCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecC
Confidence            999999999999999999999999999999997665  555679999999999999999999999999999999999999


Q ss_pred             CCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          167 PSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       167 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      +..+++.++++.|..+|.|.|..+.+++++|+++.|+|.|++|+++++-|++.|+.+||.+|.+++|.+.++++|+++++
T Consensus       163 ~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~i  242 (375)
T KOG0022|consen  163 PSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFI  242 (375)
T ss_pred             CCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeec
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIF  325 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~  325 (332)
                      |+.+ ....+.+.+.++|++ |+|+-|||+|+.+++.+++.+..++-|.-+++|.... +.+++++.+++.++++.|+.+
T Consensus       243 Np~d-~~~~i~evi~EmTdg-GvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~F  320 (375)
T KOG0022|consen  243 NPKD-LKKPIQEVIIEMTDG-GVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAF  320 (375)
T ss_pred             Chhh-ccccHHHHHHHHhcC-CceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEec
Confidence            9984 334688899999998 9999999999999999999999986699999999888 889999999999999999999


Q ss_pred             cccccC
Q 043260          326 GGIKTK  331 (332)
Q Consensus       326 ~~~~~~  331 (332)
                      |+++++
T Consensus       321 GG~K~~  326 (375)
T KOG0022|consen  321 GGFKSK  326 (375)
T ss_pred             ccccch
Confidence            999876

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.5e-54  Score=381.21  Aligned_cols=300  Identities=26%  Similarity=0.435  Sum_probs=272.1

Q ss_pred             cccccceeeeEEEecCCC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCC
Q 043260            8 SFLKIYYAAAVVCWGEGE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGD   84 (332)
Q Consensus         8 ~~~~~~~~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~   84 (332)
                      +...|.++++|.+..++.  ++++.+++.|+|+++||+|+|+|+|||++|++ +.+.++...+|.++|||.+|+|+++|+
T Consensus         3 ~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs   82 (360)
T KOG0023|consen    3 SMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGS   82 (360)
T ss_pred             cccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECC
Confidence            345689999999999988  46669999999999999999999999999999 999999999999999999999999999


Q ss_pred             CCCCCCCCCEE-EeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceE
Q 043260           85 EVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVV  163 (332)
Q Consensus        85 ~v~~~~vGdrV-~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~  163 (332)
                      +|++|++|||| +-....+|+.|.+|.+|+|+.|++...+..|+.+||+             .+.|+|++|+++++.+++
T Consensus        83 ~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt-------------~~~ggf~~~~~v~~~~a~  149 (360)
T KOG0023|consen   83 NVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGT-------------ITQGGFQEYAVVDEVFAI  149 (360)
T ss_pred             CcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCC-------------CccCccceeEEEeeeeEE
Confidence            99999999999 5577799999999999999999988777789999996             334789999999999999


Q ss_pred             EcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc-chHHHHHHcCC
Q 043260          164 KVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP-CRKDKGEAFGM  242 (332)
Q Consensus       164 ~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~-~~~~~~~~lga  242 (332)
                      ++|+++++++||.+.|+..|+|.+| +..++.||+++.|.|+|++|++++|+|+++|. +|++++++. +|.+..+.|||
T Consensus       150 kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~LGA  227 (360)
T KOG0023|consen  150 KIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSLGA  227 (360)
T ss_pred             ECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhcCc
Confidence            9999999999999999999999998 67789999999999997799999999999999 999999998 66677788999


Q ss_pred             CeeeCCC-CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEE
Q 043260          243 TDFINPD-DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNL  320 (332)
Q Consensus       243 ~~v~~~~-~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i  320 (332)
                      |..++.. +   .+..+++.+.+++ ++|.|.+.  ....+..++++++++ |++|++|.+. .++.++...++. .++|
T Consensus       228 d~fv~~~~d---~d~~~~~~~~~dg-~~~~v~~~--a~~~~~~~~~~lk~~-Gt~V~vg~p~-~~~~~~~~~lil~~~~I  299 (360)
T KOG0023|consen  228 DVFVDSTED---PDIMKAIMKTTDG-GIDTVSNL--AEHALEPLLGLLKVN-GTLVLVGLPE-KPLKLDTFPLILGRKSI  299 (360)
T ss_pred             ceeEEecCC---HHHHHHHHHhhcC-cceeeeec--cccchHHHHHHhhcC-CEEEEEeCcC-CcccccchhhhcccEEE
Confidence            9988877 5   8888888888777 77777766  335789999999998 9999999999 488888888888 8899


Q ss_pred             EEeecccccc
Q 043260          321 KGTIFGGIKT  330 (332)
Q Consensus       321 ~g~~~~~~~~  330 (332)
                      .||.+|++++
T Consensus       300 ~GS~vG~~ke  309 (360)
T KOG0023|consen  300 KGSIVGSRKE  309 (360)
T ss_pred             EeeccccHHH
Confidence            9999998764

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.2e-52  Score=372.96  Aligned_cols=293  Identities=29%  Similarity=0.425  Sum_probs=262.1

Q ss_pred             cceeeeEEEecCCCCeEEEEEecCCC-CCCeEEEEEeeeecCccccc-ccCCCCC---CCCCcccccceeEEEEEeCCCC
Q 043260           12 IYYAAAVVCWGEGEPWKVEEIQVEPP-KATEVRFKMLYASICHTDVL-SSKGFPL---PLFPRVLGHEGVGMVESIGDEV   86 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~-~~g~~~~---~~~p~v~G~e~~G~Vv~vG~~v   86 (332)
                      ..+|+|+++.+.++ +++++.|.|++ .|+||+|++.++|||++|++ +......   .+.|.++|||.+|+|.++|+.|
T Consensus         2 ~~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~V   80 (354)
T KOG0024|consen    2 AADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEV   80 (354)
T ss_pred             CcccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcccc
Confidence            35799999999998 99999999987 89999999999999999999 7765544   3589999999999999999999


Q ss_pred             CCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcC
Q 043260           87 KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD  166 (332)
Q Consensus        87 ~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP  166 (332)
                      +++++||||++-|..+|+.|++|++|+.|+|++..+.+.+ ..+                  |++++|++.+++.++|||
T Consensus        81 k~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atp-p~~------------------G~la~y~~~~~dfc~KLP  141 (354)
T KOG0024|consen   81 KHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATP-PVD------------------GTLAEYYVHPADFCYKLP  141 (354)
T ss_pred             cccccCCeEEecCCCccccchhhhCcccccCCccccccCC-CcC------------------CceEEEEEechHheeeCC
Confidence            9999999999999999999999999999999999887433 122                  459999999999999999


Q ss_pred             CCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          167 PSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       167 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      |++|++++|++. ++++++||. +++.+++|++|||+|+|++|+.+...|+++|+.+|++++..+.|+++++++|++.+.
T Consensus       142 d~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~  219 (354)
T KOG0024|consen  142 DNVSFEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTD  219 (354)
T ss_pred             CCCchhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEe
Confidence            999999999887 899999998 789999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCC-CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEee
Q 043260          247 NPDDEP-NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       247 ~~~~~~-~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~  324 (332)
                      +..... .+.+.+.+....+...+|+.|||+|....++.++..++++ |++++.|+-. ...+|++.+... ++++.|++
T Consensus       220 ~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~g-Gt~vlvg~g~-~~~~fpi~~v~~kE~~~~g~f  297 (354)
T KOG0024|consen  220 PSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSG-GTVVLVGMGA-EEIQFPIIDVALKEVDLRGSF  297 (354)
T ss_pred             eccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccC-CEEEEeccCC-CccccChhhhhhheeeeeeee
Confidence            665532 3555566666666567999999999988999999999998 9999999877 678888888777 99999998


Q ss_pred             cccc
Q 043260          325 FGGI  328 (332)
Q Consensus       325 ~~~~  328 (332)
                      -+..
T Consensus       298 ry~~  301 (354)
T KOG0024|consen  298 RYCN  301 (354)
T ss_pred             eecc
Confidence            7654

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=1.7e-48  Score=370.35  Aligned_cols=308  Identities=33%  Similarity=0.578  Sum_probs=262.2

Q ss_pred             eeeEEEecCC--------CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCC
Q 043260           15 AAAVVCWGEG--------EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus        15 ~~a~~~~~~~--------~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      |||+++.+++        +.+++++++.|+|+++||+|||.+++||++|+. +.|.++ ..+|.++|||++|+|+++|++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~   79 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP-RPLPMALGHEAAGVVVEVGEG   79 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC-CCCCccCCccceeEEEEeCCC
Confidence            7899998765        348999999999999999999999999999999 877654 357899999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCCceEE
Q 043260           86 VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVK  164 (332)
Q Consensus        86 v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~  164 (332)
                      ++++++||||++.+..+|+.|.+|++|.+++|.+..... .|...+|+.++..++...++..+.|+|+||+.++++.+++
T Consensus        80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~~  159 (371)
T cd08281          80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVK  159 (371)
T ss_pred             CCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceEE
Confidence            999999999998888899999999999999998864321 2333333222222222122222236899999999999999


Q ss_pred             cCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe
Q 043260          165 VDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD  244 (332)
Q Consensus       165 lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~  244 (332)
                      +|+++++++|+.+++++.|||+++.+..++++|++|||.|+|++|++++|+++..|+.+|++++.+++|+++++++|+++
T Consensus       160 lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~  239 (371)
T cd08281         160 IDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA  239 (371)
T ss_pred             CCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce
Confidence            99999999999999999999998877788999999999999999999999999999867999999999999999999999


Q ss_pred             eeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEE
Q 043260          245 FINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKG  322 (332)
Q Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g  322 (332)
                      ++++.+   +++.+.+++++++ ++|+|||++|....+..++++++++ |+++.+|.... ...+++...++. +++|.|
T Consensus       240 ~i~~~~---~~~~~~i~~~~~~-g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g  314 (371)
T cd08281         240 TVNAGD---PNAVEQVRELTGG-GVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARLSVPALSLVAEERTLKG  314 (371)
T ss_pred             EeCCCc---hhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHHhcC-CEEEEEccCCCCceeeecHHHHhhcCCEEEE
Confidence            999877   7788888888877 8999999999877899999999998 99999998754 456778777776 999999


Q ss_pred             eecccc
Q 043260          323 TIFGGI  328 (332)
Q Consensus       323 ~~~~~~  328 (332)
                      ++.+++
T Consensus       315 ~~~~~~  320 (371)
T cd08281         315 SYMGSC  320 (371)
T ss_pred             EecCCC
Confidence            987754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.5e-48  Score=372.06  Aligned_cols=318  Identities=47%  Similarity=0.844  Sum_probs=264.1

Q ss_pred             cccccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC-CCCCCcccccceeEEEEEeCCC
Q 043260            8 SFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP-LPLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus         8 ~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~-~~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      +.+.+++|||++++++++++.+++++.|+|+++||+|||+++|||++|+. +.|..+ ...+|.++|||++|+|+++|++
T Consensus         4 ~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~   83 (381)
T PLN02740          4 TQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEG   83 (381)
T ss_pred             ccccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCC
Confidence            45678999999999998779999999999999999999999999999999 877653 2467999999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCcccccCCcccCCCCcccccccc----CCCCCcccc--cccceecccccCCceeeEEecC
Q 043260           86 VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM----PDGSSRMSI--RGQKLYHIFTCSTMTEYMVVDA  159 (332)
Q Consensus        86 v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~----~~g~~~~~~--~~~~~~~~~~~G~~a~~~~v~~  159 (332)
                      +++|++||||++.+..+|+.|.+|++|.++.|++....  ++.    .+|...+..  .+...++....|+|+||+.++.
T Consensus        84 v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~  161 (381)
T PLN02740         84 VEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVD--PFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDS  161 (381)
T ss_pred             CCcCCCCCEEEecCCCCCCCChhhcCCCcccccCcccc--ccccccccCCCcccccccCCCcccccccCccceeEEEEeh
Confidence            99999999999999999999999999999999986532  110    011100000  0001112223478999999999


Q ss_pred             CceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH
Q 043260          160 NYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA  239 (332)
Q Consensus       160 ~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~  239 (332)
                      +.++++|+++++++++.+++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|++++++
T Consensus       162 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~  241 (381)
T PLN02740        162 ACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE  241 (381)
T ss_pred             HHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence            99999999999999999999999999988777899999999999999999999999999998679999999999999999


Q ss_pred             cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCc
Q 043260          240 FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGR  318 (332)
Q Consensus       240 lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~  318 (332)
                      +|++.+++..+ ...++.+.+++++++ ++|+|||++|++..+..+++++++++|+++.+|.... ..++++...++.++
T Consensus       242 ~Ga~~~i~~~~-~~~~~~~~v~~~~~~-g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~~~~~  319 (381)
T PLN02740        242 MGITDFINPKD-SDKPVHERIREMTGG-GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELFDGR  319 (381)
T ss_pred             cCCcEEEeccc-ccchHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHHhcCC
Confidence            99999998764 112477778888877 8999999999988899999999883399999998764 33556665555689


Q ss_pred             EEEEeeccccc
Q 043260          319 NLKGTIFGGIK  329 (332)
Q Consensus       319 ~i~g~~~~~~~  329 (332)
                      +|.|++.+++.
T Consensus       320 ~i~g~~~~~~~  330 (381)
T PLN02740        320 SITGSVFGDFK  330 (381)
T ss_pred             eEEEEecCCCC
Confidence            99999887653

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=3e-48  Score=368.25  Aligned_cols=311  Identities=43%  Similarity=0.782  Sum_probs=259.8

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||+++..++++++++++|.|+|+++||+|||+++|+|++|+. +.|.++...+|.++|||++|+|+++|+++++|++||
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd   81 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD   81 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence            8999999888779999999999999999999999999999999 877765556899999999999999999999999999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      ||++.+..+|+.|++|+.|++++|++..... .|+..+|...+..+|...++....|+|+||+.++.+.++++|++++++
T Consensus        82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~~  161 (368)
T TIGR02818        82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLE  161 (368)
T ss_pred             EEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCCCCHH
Confidence            9999999999999999999999999854221 244333322222222222333334789999999999999999999999


Q ss_pred             hhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP  252 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  252 (332)
                      +++.+++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|++.++++|++.+++..+ .
T Consensus       162 ~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~-~  240 (368)
T TIGR02818       162 EVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPND-Y  240 (368)
T ss_pred             HhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccc-c
Confidence            999999999999999877889999999999999999999999999999867999999999999999999999998763 1


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeeccc
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIFGG  327 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~  327 (332)
                      ..++.+.+++++++ ++|++||++|++..+.++++++++++|+++.+|.... ...+++...++.+..+.|+..+.
T Consensus       241 ~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~  315 (368)
T TIGR02818       241 DKPIQEVIVEITDG-GVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVTGRVWRGSAFGG  315 (368)
T ss_pred             chhHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhccceEEEeeccC
Confidence            13466778888876 8999999999877889999999874499999998653 34555666555566678876543

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=1.9e-47  Score=362.86  Aligned_cols=315  Identities=48%  Similarity=0.858  Sum_probs=264.4

Q ss_pred             ceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           13 YYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        13 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      |+|||+++.++++++++++++.|+|+++||+|||.+++||++|+. +.|..+...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (369)
T cd08301           1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP   80 (369)
T ss_pred             CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence            489999999888789999999999999999999999999999999 8777655678999999999999999999999999


Q ss_pred             CCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccC-CCCCcccccccceecccccCCceeeEEecCCceEEcCCCC
Q 043260           92 GDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMP-DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSI  169 (332)
Q Consensus        92 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~-~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~  169 (332)
                      ||||+..+..+|++|.+|++|.+++|.+..... .|... ++...+...|...++....|+|+||+.++...++++|+++
T Consensus        81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~  160 (369)
T cd08301          81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEA  160 (369)
T ss_pred             CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCC
Confidence            999999999999999999999999999864321 12211 1111111122223333345789999999999999999999


Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      ++++++++++++.|+|+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|++.++++.
T Consensus       161 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~  240 (369)
T cd08301         161 PLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPK  240 (369)
T ss_pred             CHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEccc
Confidence            99999999999999999887788999999999999999999999999999986799999999999999999999999876


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeecccc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIFGGI  328 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~~  328 (332)
                      + ..+++.+.+++++++ ++|++||++|....+..+++++++++|+++.+|.... ...++++..++.+++|.|+..+++
T Consensus       241 ~-~~~~~~~~v~~~~~~-~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  318 (369)
T cd08301         241 D-HDKPVQEVIAEMTGG-GVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLLNGRTLKGTLFGGY  318 (369)
T ss_pred             c-cchhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHhcCCeEEEEecCCC
Confidence            4 113466677777776 8999999999877889999999993299999998764 456677665666999999988765


Q ss_pred             c
Q 043260          329 K  329 (332)
Q Consensus       329 ~  329 (332)
                      .
T Consensus       319 ~  319 (369)
T cd08301         319 K  319 (369)
T ss_pred             C
Confidence            3

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=2.5e-47  Score=361.94  Aligned_cols=314  Identities=47%  Similarity=0.801  Sum_probs=261.9

Q ss_pred             ceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           13 YYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        13 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      .+|||+++..++++++++++|.|+|+++||+|||+++++|++|+. +.+.++...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~v   80 (368)
T cd08300           1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKP   80 (368)
T ss_pred             CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCC
Confidence            368999998887779999999999999999999999999999999 8777665678999999999999999999999999


Q ss_pred             CCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           92 GDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        92 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      ||||+..+..+|+.|.+|++|+++.|.+..... .|...+|...+..+|...++....|+|+||+.++.+.++++|++++
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~  160 (368)
T cd08300          81 GDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAP  160 (368)
T ss_pred             CCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCCCCC
Confidence            999999999999999999999999998864211 2333333211111222223333357899999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      +++++++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++.++++|+++++++++
T Consensus       161 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~  240 (368)
T cd08300         161 LDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKD  240 (368)
T ss_pred             hhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccc
Confidence            99999999999999998877788999999999999999999999999999867999999999999999999999998865


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeecccc
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIFGGI  328 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~~  328 (332)
                       ..+++.+.+.+++++ ++|+|||++|+...+.++++++++++|+++.+|.... ....++...+..+..+.|+..+++
T Consensus       241 -~~~~~~~~v~~~~~~-g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  317 (368)
T cd08300         241 -HDKPIQQVLVEMTDG-GVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLVTGRVWKGTAFGGW  317 (368)
T ss_pred             -cchHHHHHHHHHhCC-CCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHhhcCeEEEEEeccc
Confidence             112577788888877 8999999999877899999999874399999998743 334555555555667788776654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=2.8e-47  Score=361.30  Aligned_cols=314  Identities=53%  Similarity=0.928  Sum_probs=266.5

Q ss_pred             ceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           13 YYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        13 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      +.|||+++.+.+++++++++|.|+++++||+|||+++++|++|+. +.|..+ ..+|.++|||++|+|+++|++++++++
T Consensus         1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08277           1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP   79 (365)
T ss_pred             CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence            478999999887779999999999999999999999999999999 777654 467899999999999999999999999


Q ss_pred             CCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           92 GDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        92 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      ||||+..+..+|+.|.+|++|.+++|++..+...|+..++.......|...++....|+|+||+.++++.++++|+++++
T Consensus        80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~~  159 (365)
T cd08277          80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPL  159 (365)
T ss_pred             CCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCCCCCH
Confidence            99999999999999999999999999997655445555443222222333333333578999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      ++++++++++.|||+++.+..++++|++|||+|+|++|++++|+++.+|+.+|++++++++|++.++++|++++++..+ 
T Consensus       160 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~-  238 (365)
T cd08277         160 EHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKD-  238 (365)
T ss_pred             HHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEecccc-
Confidence            9999999999999998877889999999999999999999999999999867999999999999999999999998764 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhcCcEEEEeeccccc
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGIK  329 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  329 (332)
                      ...++.+.++++++ .++|+|||++|+...+..+++++++++|+++.+|...+...++++..++.+++|.|++.+++.
T Consensus       239 ~~~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  315 (365)
T cd08277         239 SDKPVSEVIREMTG-GGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLILGRTWKGSFFGGFK  315 (365)
T ss_pred             ccchHHHHHHHHhC-CCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhhCCEEEeeecCCCC
Confidence            11235667777777 489999999998778899999998733999999987543456777677679999999887653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=3.9e-47  Score=359.39  Aligned_cols=300  Identities=30%  Similarity=0.516  Sum_probs=258.1

Q ss_pred             eeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           14 YAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        14 ~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      ||||+++++++++++++++|.|+|+++||+|||.++++|++|+. +.|..+ ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN-DEFPFLLGHEAAGVVEAVGEGVTDVAPG   79 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc-ccCCcccccceEEEEEEeCCCCcccCCC
Confidence            69999999998889999999999999999999999999999999 777543 3578999999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCcccccccc-CCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      |||++.+..+|+.|.+|++|++++|........... .+|.        ........|+|+||+.++++.++++|+++++
T Consensus        80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~--------~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~  151 (358)
T TIGR03451        80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGT--------ELSPALGIGAFAEKTLVHAGQCTKVDPAADP  151 (358)
T ss_pred             CEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCc--------ccccccccccccceEEEehhheEECCCCCCh
Confidence            999999999999999999999999986432110000 0110        0000112367999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      ++++.+++++.++|+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++++.+ 
T Consensus       152 ~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~-  230 (358)
T TIGR03451       152 AAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSG-  230 (358)
T ss_pred             hHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCC-
Confidence            9999999999999988777788999999999999999999999999999856999999999999999999999999876 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEEeecc
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                        +++.+.+.+.+++.++|+|||++|+++.+..++++++++ |+++.+|.... ...++++..++. +++|.+++.+
T Consensus       231 --~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~  304 (358)
T TIGR03451       231 --TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYG  304 (358)
T ss_pred             --cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCceeeccHHHHhhcCCEEEEeecC
Confidence              778888888888878999999999877899999999998 99999998754 346677766666 8999998754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=5.8e-47  Score=355.27  Aligned_cols=285  Identities=27%  Similarity=0.463  Sum_probs=248.7

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||+++++++. +++++++.|+|+++||+||+.++++|++|+. +.+.+.. ..+|.++|||++|+|+++|++|+++++|
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (339)
T cd08239           1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG   79 (339)
T ss_pred             CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence            79999998765 9999999999999999999999999999999 7665432 3358899999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      |||+..+..+|+.|.+|++|++++|.+... ..|...+|                  +|+||+.++.+.++++|++++++
T Consensus        80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~-~~g~~~~G------------------~~ae~~~v~~~~~~~~P~~~~~~  140 (339)
T cd08239          80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA-AYGWNRDG------------------GHAEYMLVPEKTLIPLPDDLSFA  140 (339)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCcCccc-ccccCCCC------------------cceeEEEechHHeEECCCCCCHH
Confidence            999999999999999999999999987653 12444444                  59999999999999999999999


Q ss_pred             hhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP  252 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  252 (332)
                      +|+++++++.|||+++ ....+++|++|||+|+|++|++++|+++.+|+++|++++++++|++.++++|++.++++++  
T Consensus       141 ~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~--  217 (339)
T cd08239         141 DGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ--  217 (339)
T ss_pred             HhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc--
Confidence            9999999999999998 5678899999999999999999999999999944999999999999999999999999876  


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCCh-HhHh-cCcEEEEeeccc
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNF-PAIA-LGRNLKGTIFGG  327 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~-~~~~-~~~~i~g~~~~~  327 (332)
                       .+ .+.+.+++++.++|+|||++|+...+..++++++++ |+++.+|.....  +++. ..++ ++++|.|++.++
T Consensus       218 -~~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~i~g~~~~~  289 (339)
T cd08239         218 -DD-VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPW-GRLVLVGEGGEL--TIEVSNDLIRKQRTLIGSWYFS  289 (339)
T ss_pred             -ch-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcCCCCc--ccCcHHHHHhCCCEEEEEecCC
Confidence             55 667777787778999999999977778999999998 999999986542  3333 2344 499999998764

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.3e-46  Score=358.24  Aligned_cols=317  Identities=42%  Similarity=0.787  Sum_probs=257.3

Q ss_pred             eecccccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCC
Q 043260            6 HISFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGD   84 (332)
Q Consensus         6 ~~~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~   84 (332)
                      +++.|....|||++++++.+.+++++++.|+|+++||+|||.++|+|++|+. +.+..   .+|.++|||++|+|+++|+
T Consensus         4 ~~~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~   80 (378)
T PLN02827          4 SISQPNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGE   80 (378)
T ss_pred             cccCcccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCC
Confidence            4566666789999999988779999999999999999999999999999999 76542   4688999999999999999


Q ss_pred             CCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCC-CCCcccccccceecccccCCceeeEEecCCceE
Q 043260           85 EVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD-GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVV  163 (332)
Q Consensus        85 ~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~-g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~  163 (332)
                      ++++|++||||+..+..+|++|.+|++|++++|++......|.... ....+...|...++....|+|+||+.++++.++
T Consensus        81 ~v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~  160 (378)
T PLN02827         81 GVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAV  160 (378)
T ss_pred             CCcccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheE
Confidence            9999999999999999999999999999999998853221122110 000000000000111123689999999999999


Q ss_pred             EcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC
Q 043260          164 KVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT  243 (332)
Q Consensus       164 ~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~  243 (332)
                      ++|+++++++++.+.+++.++|+++.+..++++|++|||+|+|++|++++|+++.+|++.|++++++++|+++++++|++
T Consensus       161 ~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~  240 (378)
T PLN02827        161 KVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT  240 (378)
T ss_pred             ECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc
Confidence            99999999999999889899998877778899999999999999999999999999986688899899999999999999


Q ss_pred             eeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCCh-HhHh-cCcEEE
Q 043260          244 DFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNF-PAIA-LGRNLK  321 (332)
Q Consensus       244 ~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~-~~~~-~~~~i~  321 (332)
                      +++++++ ..+++.+.+++++++ ++|+|||++|....+..+++.+++++|+++.+|.+.. ...++. ..++ ++++|.
T Consensus       241 ~~i~~~~-~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~  317 (378)
T PLN02827        241 DFINPND-LSEPIQQVIKRMTGG-GADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKA-KPEVSAHYGLFLSGRTLK  317 (378)
T ss_pred             EEEcccc-cchHHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCC-CccccccHHHHhcCceEE
Confidence            9998764 113567778888876 8999999999977889999999985499999998763 234443 2344 499999


Q ss_pred             Eeecccc
Q 043260          322 GTIFGGI  328 (332)
Q Consensus       322 g~~~~~~  328 (332)
                      |+..+.+
T Consensus       318 g~~~~~~  324 (378)
T PLN02827        318 GSLFGGW  324 (378)
T ss_pred             eeecCCC
Confidence            9987654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=1.9e-46  Score=352.80  Aligned_cols=290  Identities=27%  Similarity=0.402  Sum_probs=239.5

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCc-ccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPR-VLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~-v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |++++++.+++...+++.+.|.+.++||+|||.++|||+||++ +.+..+....|. ++|||++|+|+++| .++.+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G   79 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG   79 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence            6778888777645577777777889999999999999999999 988877766666 99999999999999 77889999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCC-ceEEcCCCCCh
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN-YVVKVDPSIDL  171 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~-~v~~lP~~~~~  171 (332)
                      |||++.|..+|++|++|++|.+++|++..+.  |....+.             ...|+|+||+.+|.+ .+.++|+++ .
T Consensus        80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~--g~~~~~~-------------~~~G~~aEyv~vp~~~~~~~~pd~~-~  143 (350)
T COG1063          80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFY--GYAGLGG-------------GIDGGFAEYVRVPADFNLAKLPDGI-D  143 (350)
T ss_pred             CEEEECCCcCCCCChhHhCcCcccCCCcccc--ccccccC-------------CCCCceEEEEEeccccCeecCCCCC-C
Confidence            9999999999999999999999999976533  2221110             012459999999965 555558888 4


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCCeeeCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMTDFINPDD  250 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~  250 (332)
                      .+++++..++++++++........++++|+|+|+|++|++++++++.+|+.+||++|.+++|++++++ .|++.+++...
T Consensus       144 ~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~  223 (350)
T COG1063         144 EEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE  223 (350)
T ss_pred             hhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc
Confidence            55555666999998764455556667799999999999999999999999999999999999999999 66676766655


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                         ++....+.+++++.|+|++|||+|...++.++++.++++ |+++++|........++...+.. +++|.|++.
T Consensus       224 ---~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~g-G~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~  295 (350)
T COG1063         224 ---DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLR  295 (350)
T ss_pred             ---ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCC-CEEEEEeccCCccCccCHHHHHhcccEEEeccC
Confidence               466777888898899999999999998999999999998 99999999985222677777666 999999954

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-45  Score=346.10  Aligned_cols=285  Identities=24%  Similarity=0.328  Sum_probs=237.9

Q ss_pred             ceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-cc-CCCC--CCCCCcccccceeEEEEEeCCCCCC
Q 043260           13 YYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SS-KGFP--LPLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        13 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~-g~~~--~~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      ..+|+++++++++ +++++.+.| +.++||||||.++|||++|++ +. +..+  ...+|.++|||++|+|+++  ++++
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~   78 (343)
T PRK09880          3 VKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSG   78 (343)
T ss_pred             ccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCcc
Confidence            4689999998887 999999997 688999999999999999998 65 3322  2467999999999999999  7889


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      |++||||++.+..+|+.|.+|++|++++|++..+.  |.....             ....|+|+||+.++++.++++|++
T Consensus        79 ~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~--g~~~~~-------------~~~~G~~aey~~v~~~~~~~~P~~  143 (343)
T PRK09880         79 LKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFF--GSAMYF-------------PHVDGGFTRYKVVDTAQCIPYPEK  143 (343)
T ss_pred             CCCCCEEEECCCCCCcCChhhcCCChhhCCCccee--eccccc-------------CCCCCceeeeEEechHHeEECCCC
Confidence            99999999999999999999999999999986543  321000             001256999999999999999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      +++++++.. .++.+||+++. .....+|++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++|+++++++
T Consensus       144 l~~~~aa~~-~~~~~a~~al~-~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~  221 (343)
T PRK09880        144 ADEKVMAFA-EPLAVAIHAAH-QAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNP  221 (343)
T ss_pred             CCHHHHHhh-cHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecC
Confidence            999876644 58889999884 4566789999999999999999999999999779999999999999999999999998


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      .+   +++.+.. +. .+ ++|+|||++|++..+..++++++++ |+++.+|... ...++++..++. ++++.|+...
T Consensus       222 ~~---~~~~~~~-~~-~g-~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~k~~~i~g~~~~  292 (343)
T PRK09880        222 QN---DDLDHYK-AE-KG-YFDVSFEVSGHPSSINTCLEVTRAK-GVMVQVGMGG-APPEFPMMTLIVKEISLKGSFRF  292 (343)
T ss_pred             Cc---ccHHHHh-cc-CC-CCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCC-CCCccCHHHHHhCCcEEEEEeec
Confidence            76   5544322 22 22 6999999999977889999999998 9999999865 445777777766 9999998643

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=5.4e-45  Score=344.94  Aligned_cols=295  Identities=24%  Similarity=0.408  Sum_probs=244.4

Q ss_pred             ccccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCC
Q 043260            9 FLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus         9 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      ..-||+++++.+++..+.+++.+++.|+|+++||+|||.++|||++|++ +.+.++...+|.++|||++|+|+++|++|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~   86 (360)
T PLN02586          7 EEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVK   86 (360)
T ss_pred             hhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCC
Confidence            3457888899998887779999999999999999999999999999999 777655456799999999999999999999


Q ss_pred             CCCCCCEEEeecc-cCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcC
Q 043260           88 ELKEGDIVIPTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD  166 (332)
Q Consensus        88 ~~~vGdrV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP  166 (332)
                      +|++||||++.+. .+|+.|.+|++|+++.|++..+...++..+|.             ...|+|+||+.++.+.++++|
T Consensus        87 ~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~-------------~~~G~~aey~~v~~~~~~~lP  153 (360)
T PLN02586         87 KFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGT-------------KNYGGYSDMIVVDQHFVLRFP  153 (360)
T ss_pred             ccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCC-------------cCCCccceEEEEchHHeeeCC
Confidence            9999999986554 58999999999999999986533111100111             012469999999999999999


Q ss_pred             CCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHHcCCCee
Q 043260          167 PSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR-KDKGEAFGMTDF  245 (332)
Q Consensus       167 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~-~~~~~~lga~~v  245 (332)
                      +++++++++.+++++.|+|+++.+...+++|++|||.|+|++|++++|+|+.+|+ +|++++.++++ .+.++++|++.+
T Consensus       154 ~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~v  232 (360)
T PLN02586        154 DNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGADSF  232 (360)
T ss_pred             CCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcEE
Confidence            9999999999999999999988666667899999999999999999999999999 78887776665 456789999999


Q ss_pred             eCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEee
Q 043260          246 INPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~  324 (332)
                      ++..+   .   +.+++.++  ++|+|||++|+...+.+++++++++ |+++.+|... ....+++..++. ++.+.|+.
T Consensus       233 i~~~~---~---~~~~~~~~--~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~vG~~~-~~~~~~~~~~~~~~~~i~g~~  302 (360)
T PLN02586        233 LVSTD---P---EKMKAAIG--TMDYIIDTVSAVHALGPLLGLLKVN-GKLITLGLPE-KPLELPIFPLVLGRKLVGGSD  302 (360)
T ss_pred             EcCCC---H---HHHHhhcC--CCCEEEECCCCHHHHHHHHHHhcCC-cEEEEeCCCC-CCCccCHHHHHhCCeEEEEcC
Confidence            98754   2   24555553  6999999999877889999999998 9999999765 346677776666 77888887


Q ss_pred             ccc
Q 043260          325 FGG  327 (332)
Q Consensus       325 ~~~  327 (332)
                      .++
T Consensus       303 ~~~  305 (360)
T PLN02586        303 IGG  305 (360)
T ss_pred             cCC
Confidence            654

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=5e-45  Score=339.29  Aligned_cols=264  Identities=28%  Similarity=0.400  Sum_probs=234.8

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCC-CCCCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~-~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      ||+++++..+.+  ++++++|.|+|++|||||||++++||+.|.. +.|. .+..++|.++|.|++|+|+++|++|+.|+
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~   80 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK   80 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence            788999877755  8899999999999999999999999999999 8875 44467999999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||||+..+ ..                       +  .                  .|+|+||+.+|++.++++|++++
T Consensus        81 ~GdrV~~~~-~~-----------------------~--~------------------~G~~AEy~~v~a~~~~~~P~~ls  116 (326)
T COG0604          81 VGDRVAALG-GV-----------------------G--R------------------DGGYAEYVVVPADWLVPLPDGLS  116 (326)
T ss_pred             CCCEEEEcc-CC-----------------------C--C------------------CCcceeEEEecHHHceeCCCCCC
Confidence            999998542 00                       0  1                  35699999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +++||++++++.|||+++.+..++++|++|||+|+ |++|.+++|+|+.+|+ .++++..++++.++++++|+|++++++
T Consensus       117 ~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~  195 (326)
T COG0604         117 FEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYR  195 (326)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCC
Confidence            99999999999999999988899999999999987 9999999999999998 677777777777799999999999999


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC-CCcccCChHhHhc-CcEEEEeeccc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN-EAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~-~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      +   .++.+.++++++++++|+|+|++|+ +.+..++++|+++ |+++.+|... ....+++...++. .+++.|+....
T Consensus       196 ~---~~~~~~v~~~t~g~gvDvv~D~vG~-~~~~~~l~~l~~~-G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~  270 (326)
T COG0604         196 E---EDFVEQVRELTGGKGVDVVLDTVGG-DTFAASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGS  270 (326)
T ss_pred             c---ccHHHHHHHHcCCCCceEEEECCCH-HHHHHHHHHhccC-CEEEEEecCCCCCccccCHHHHhhccEEEEEeccee
Confidence            8   8899999999999999999999999 5888999999999 9999999988 4667777666665 88888887664


Q ss_pred             c
Q 043260          328 I  328 (332)
Q Consensus       328 ~  328 (332)
                      .
T Consensus       271 ~  271 (326)
T COG0604         271 R  271 (326)
T ss_pred             c
Confidence            4

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=6.2e-45  Score=347.85  Aligned_cols=269  Identities=27%  Similarity=0.387  Sum_probs=225.8

Q ss_pred             eeeeEEEecCCCCeEEEEEecCCCC-------CCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCC
Q 043260           14 YAAAVVCWGEGEPWKVEEIQVEPPK-------ATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus        14 ~~~a~~~~~~~~~l~~~~~~~p~~~-------~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      -|||++++++++ ++++++|.|+|+       +|||||||+++|||++|++ +.|..+ ..+|.++|||++|+|+++|++
T Consensus         2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~   79 (393)
T TIGR02819         2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKGRD   79 (393)
T ss_pred             CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEcCc
Confidence            389999999886 999999999874       6899999999999999999 877543 357899999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccc----cccccCCCCCcccccccceecccccCCceeeEEecCC-
Q 043260           86 VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT----FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN-  160 (332)
Q Consensus        86 v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~----~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~-  160 (332)
                      |++|++||||++.+..+|+.|++|++|++++|++....    ..|+...|              ...|+|+||+.++.. 
T Consensus        80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~--------------~~~G~~aey~~v~~~~  145 (393)
T TIGR02819        80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG--------------GWVGGQSEYVMVPYAD  145 (393)
T ss_pred             cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC--------------CCCCceEEEEEechhh
Confidence            99999999999999999999999999999999975321    01221100              013569999999963 


Q ss_pred             -ceEEcCCCCCh----hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 043260          161 -YVVKVDPSIDL----SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD  235 (332)
Q Consensus       161 -~v~~lP~~~~~----~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~  235 (332)
                       .++++|++++.    .+++.+.+++.++|+++ +..++++|++|||.|+|++|++++|+|+.+|++.|++++++++|++
T Consensus       146 ~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~  224 (393)
T TIGR02819       146 FNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLA  224 (393)
T ss_pred             CceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence             79999998754    35677778899999987 4678999999999989999999999999999956777788889999


Q ss_pred             HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCCh--------------HHHHHHHHHhccCCcEEEEEcC
Q 043260          236 KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVA--------------SLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       236 ~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~--------------~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      +++++|++.+....+   .++.+.+.+++++.++|++||++|.+              .++.+++++++++ |+++.+|.
T Consensus       225 ~a~~~Ga~~v~~~~~---~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~i~~~G~  300 (393)
T TIGR02819       225 QARSFGCETVDLSKD---ATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVG-GAIGIPGL  300 (393)
T ss_pred             HHHHcCCeEEecCCc---ccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCC-CEEEEeee
Confidence            999999975443333   45677788888877899999999985              4799999999998 99999998


Q ss_pred             CC
Q 043260          302 AN  303 (332)
Q Consensus       302 ~~  303 (332)
                      +.
T Consensus       301 ~~  302 (393)
T TIGR02819       301 YV  302 (393)
T ss_pred             cC
Confidence            63

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=8e-44  Score=335.60  Aligned_cols=285  Identities=25%  Similarity=0.373  Sum_probs=246.7

Q ss_pred             EEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCC-CCCCCCCcccccceeEEEEEeCCCCCCCCCCCEE
Q 043260           18 VVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV   95 (332)
Q Consensus        18 ~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~-~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV   95 (332)
                      +++++++++++++++|.|+|+++||+|||.++++|++|++ +.+. .+...+|.++|||++|+|+++|++++.+ +||||
T Consensus         2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV   80 (349)
T TIGR03201         2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV   80 (349)
T ss_pred             ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence            4677777668999999999999999999999999999998 5443 3334678999999999999999999887 99999


Q ss_pred             EeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC------CC
Q 043260           96 IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP------SI  169 (332)
Q Consensus        96 ~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~------~~  169 (332)
                      ++.+..+|+.|.+|++|.+++|.+..+.  |...+|                  +|+||+.++.+.++++|+      ++
T Consensus        81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~~--g~~~~G------------------~~ae~~~v~~~~~~~ip~~~~~~~~~  140 (349)
T TIGR03201        81 IVPAVIPCGECELCKTGRGTICRAQKMP--GNDMQG------------------GFASHIVVPAKGLCVVDEARLAAAGL  140 (349)
T ss_pred             EECCCCCCCCChhhhCcCcccCCCCCcc--CcCCCC------------------cccceEEechHHeEECCcccccccCC
Confidence            9999999999999999999999876543  443344                  599999999999999999      89


Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      ++++++.+++++.++|+++. ...+++|++|+|+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++.++++.
T Consensus       141 ~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~~~  218 (349)
T TIGR03201       141 PLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLTLNPK  218 (349)
T ss_pred             CHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceEecCc
Confidence            99999999999999999884 5789999999999999999999999999999 899999999999999999999999876


Q ss_pred             CCCCchHHHHHHHhcCCCCcc----EEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEee
Q 043260          250 DEPNKSISELVKEMTHGTGVD----YGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d----~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~  324 (332)
                      +...+++.+.++++++++|+|    +||||+|+...+..++++++++ |+++.+|... ...++++..++. ++++.|++
T Consensus       219 ~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~~~g~~  296 (349)
T TIGR03201       219 DKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTM-AKTEYRLSNLMAFHARALGNW  296 (349)
T ss_pred             cccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcC-CeEEEECcCC-CCcccCHHHHhhcccEEEEEe
Confidence            522236777788888888887    8999999987888999999998 9999999876 345677777666 88999987


Q ss_pred             ccc
Q 043260          325 FGG  327 (332)
Q Consensus       325 ~~~  327 (332)
                      .++
T Consensus       297 ~~~  299 (349)
T TIGR03201       297 GCP  299 (349)
T ss_pred             cCC
Confidence            543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.6e-43  Score=336.29  Aligned_cols=292  Identities=22%  Similarity=0.395  Sum_probs=237.4

Q ss_pred             ceeeeE--EEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCC
Q 043260           13 YYAAAV--VCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKEL   89 (332)
Q Consensus        13 ~~~~a~--~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~   89 (332)
                      .+.||+  ++++..+.+++.+++.|+|+++||+|||.++|||++|++ +.|.++...+|.++|||++|+|+++|+++++|
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~   82 (375)
T PLN02178          3 DQNKAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKF   82 (375)
T ss_pred             ccceeEEEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCcc
Confidence            344554  445554568889999999999999999999999999999 87765444578999999999999999999999


Q ss_pred             CCCCEEEeeccc-CCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCC
Q 043260           90 KEGDIVIPTFIG-ECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        90 ~vGdrV~~~~~~-~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      ++||||++.+.. +|+.|++|++|++++|++..+...+....|.             ...|+|+||+.++++.++++|++
T Consensus        83 ~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~-------------~~~G~~aey~~v~~~~~~~lP~~  149 (375)
T PLN02178         83 KEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGT-------------RNQGGYSDVIVVDHRFVLSIPDG  149 (375)
T ss_pred             CCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCC-------------cCCCccccEEEEchHHeEECCCC
Confidence            999999876665 6999999999999999986532110000010             01256999999999999999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhC-CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHHcCCCeee
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFK-VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR-KDKGEAFGMTDFI  246 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~-~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~-~~~~~~lga~~v~  246 (332)
                      ++++++++++++..|+|+++..... .++|++|+|.|+|++|++++|+|+.+|+ +|++++.++++ +++++++|+++++
T Consensus       150 ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i  228 (375)
T PLN02178        150 LPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFL  228 (375)
T ss_pred             CCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEE
Confidence            9999999999999999998744332 3689999999999999999999999999 78888876554 6788999999999


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      ++.+   .   +.+.+.++  ++|+|||++|....+..++++++++ |+++.+|... ...++++..++. +++|.|+..
T Consensus       229 ~~~~---~---~~v~~~~~--~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~vG~~~-~~~~~~~~~~~~~~~~i~g~~~  298 (375)
T PLN02178        229 VTTD---S---QKMKEAVG--TMDFIIDTVSAEHALLPLFSLLKVS-GKLVALGLPE-KPLDLPIFPLVLGRKMVGGSQI  298 (375)
T ss_pred             cCcC---H---HHHHHhhC--CCcEEEECCCcHHHHHHHHHhhcCC-CEEEEEccCC-CCCccCHHHHHhCCeEEEEeCc
Confidence            8754   2   34555553  6999999999877889999999998 9999999875 446677777766 999999887


Q ss_pred             ccc
Q 043260          326 GGI  328 (332)
Q Consensus       326 ~~~  328 (332)
                      ++.
T Consensus       299 ~~~  301 (375)
T PLN02178        299 GGM  301 (375)
T ss_pred             cCH
Confidence            653

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=1.9e-43  Score=333.76  Aligned_cols=283  Identities=27%  Similarity=0.372  Sum_probs=228.5

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC---CCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL---PLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~---~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||++++.++.+++++++|.|+|+++||||||+++|||++|++ +.|.++.   ..+|.++|||++|+|+++|++ +.|+
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~   79 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS   79 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence            6899998654449999999999999999999999999999999 8776432   246889999999999999999 9999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||||++.+..+|+.|.+|++|++++|++..+...|...                 ..|+|+||+.++++.++++|++++
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~-----------------~~G~~aey~~~~~~~~~~~P~~~~  142 (355)
T cd08230          80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKG-----------------LHGFMREYFVDDPEYLVKVPPSLA  142 (355)
T ss_pred             CCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCC-----------------CCccceeEEEeccccEEECCCCCC
Confidence            999999999999999999999999999886543223210                 124699999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHH------hhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcC---CcchHHHHHHcC
Q 043260          171 LSLAGFLSCGYSSGFGAAWK------EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK---NPCRKDKGEAFG  241 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~------~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~---~~~~~~~~~~lg  241 (332)
                       ++ +.+..++.++++++..      ....++|++|+|+|+|++|++++|+|+.+|+ +|+++++   +++|+++++++|
T Consensus       143 -~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~G  219 (355)
T cd08230         143 -DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELG  219 (355)
T ss_pred             -cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcC
Confidence             44 4444576666655422      2235789999999999999999999999999 8999987   678999999999


Q ss_pred             CCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCC----hHhHhc
Q 043260          242 MTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLN----FPAIAL  316 (332)
Q Consensus       242 a~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~----~~~~~~  316 (332)
                      ++. +++.+   +++.+ . +.  ..++|+|||++|++..+..+++.++++ |+++.+|...+ ...+++    ...++.
T Consensus       220 a~~-v~~~~---~~~~~-~-~~--~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~  290 (355)
T cd08230         220 ATY-VNSSK---TPVAE-V-KL--VGEFDLIIEATGVPPLAFEALPALAPN-GVVILFGVPGGGREFEVDGGELNRDLVL  290 (355)
T ss_pred             CEE-ecCCc---cchhh-h-hh--cCCCCEEEECcCCHHHHHHHHHHccCC-cEEEEEecCCCCCccccChhhhhhhHhh
Confidence            987 45554   33333 2 12  237999999999877889999999998 99999998765 355666    234444


Q ss_pred             -CcEEEEeeccc
Q 043260          317 -GRNLKGTIFGG  327 (332)
Q Consensus       317 -~~~i~g~~~~~  327 (332)
                       +++|.|+..++
T Consensus       291 k~~~i~g~~~~~  302 (355)
T cd08230         291 GNKALVGSVNAN  302 (355)
T ss_pred             cCcEEEEecCCc
Confidence             99999987654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-43  Score=331.02  Aligned_cols=282  Identities=24%  Similarity=0.376  Sum_probs=239.5

Q ss_pred             eeeEEEecCCCCeEEEEEecCCC-CCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPP-KATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||+++++++. ++++++|.|+| +++||+|||.++++|++|+. +.... ...+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~~vG   78 (347)
T PRK10309          1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG-AHYYPITLGHEFSGYVEAVGSGVDDLHPG   78 (347)
T ss_pred             CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC-CCCCCcccccceEEEEEEeCCCCCCCCCC
Confidence            78999998875 99999999997 58999999999999999997 43211 12468899999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      |||++.+..+|+.|.+|+.|++++|.+..+.  |...+|                  +|+||+.++.+.++++|++++++
T Consensus        79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~--g~~~~G------------------~~aey~~v~~~~~~~lP~~~s~~  138 (347)
T PRK10309         79 DAVACVPLLPCFTCPECLRGFYSLCAKYDFI--GSRRDG------------------GNAEYIVVKRKNLFALPTDMPIE  138 (347)
T ss_pred             CEEEECCCcCCCCCcchhCcCcccCCCccee--ccCCCC------------------ccceeEEeehHHeEECcCCCCHH
Confidence            9999999999999999999999999875433  443344                  59999999999999999999999


Q ss_pred             hhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP  252 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  252 (332)
                      +++.+. ++.++++++ +...+++|++|||+|+|++|++++|+|+.+|++.|+++++++++++.++++|++++++++.  
T Consensus       139 ~aa~~~-~~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~--  214 (347)
T PRK10309        139 DGAFIE-PITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE--  214 (347)
T ss_pred             Hhhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc--
Confidence            999874 566788875 6678899999999999999999999999999955889999999999999999999998775  


Q ss_pred             CchHHHHHHHhcCCCCcc-EEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCC---hHhHhc-CcEEEEeecc
Q 043260          253 NKSISELVKEMTHGTGVD-YGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN---FPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d-~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~---~~~~~~-~~~i~g~~~~  326 (332)
                       .+ .+.+.+++.+.++| +||||+|+...+.+++++++++ |+++.+|.... ..+++   +..+++ +++|.|++.+
T Consensus       215 -~~-~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~i~g~~~~  289 (347)
T PRK10309        215 -MS-APQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPR-AQLALVGTLHH-DLHLTSATFGKILRKELTVIGSWMN  289 (347)
T ss_pred             -cC-HHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-CcccChhhhhHHhhcCcEEEEEecc
Confidence             44 45567777766898 9999999977899999999998 99999998763 23333   234454 8999998875

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=1.1e-42  Score=330.84  Aligned_cols=315  Identities=40%  Similarity=0.699  Sum_probs=257.2

Q ss_pred             ccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCC
Q 043260           11 KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKEL   89 (332)
Q Consensus        11 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~   89 (332)
                      +..+||++++..++.+++++++|.|++.++||+|||+++++|++|+. +.|.++ ..+|.++|||++|+|+++|++++.+
T Consensus         4 ~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~   82 (373)
T cd08299           4 KVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTV   82 (373)
T ss_pred             ccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccC
Confidence            34569999998887779999999999999999999999999999999 777653 4578899999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCC
Q 043260           90 KEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        90 ~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      ++||+|+..+..+|+.|.+|+++.++.|++..... .|+..++..+....|.+..+....|+|+||+.++.+.++++|++
T Consensus        83 ~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~  162 (373)
T cd08299          83 KPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAA  162 (373)
T ss_pred             CCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCCC
Confidence            99999999999999999999999999998764321 12222111111111111122223478999999999999999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      +++++++++++++.+||+++.+..++++|++|+|+|+|++|++++++++.+|+.+|++++++++|++.++++|++++++.
T Consensus       163 l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~  242 (373)
T cd08299         163 APLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINP  242 (373)
T ss_pred             CChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecc
Confidence            99999999999999999988788899999999999889999999999999998679999999999999999999999987


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhc-cCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeecc
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATK-LGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIFG  326 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~-~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~  326 (332)
                      .+ ...++.+.+.++++ .++|++||++|++..+..++..+. ++ |+++.+|.... ...++++..+..+.++.|++.+
T Consensus       243 ~~-~~~~~~~~v~~~~~-~~~d~vld~~g~~~~~~~~~~~~~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~  319 (373)
T cd08299         243 QD-YKKPIQEVLTEMTD-GGVDFSFEVIGRLDTMKAALASCHEGY-GVSVIVGVPPSSQNLSINPMLLLTGRTWKGAVFG  319 (373)
T ss_pred             cc-cchhHHHHHHHHhC-CCCeEEEECCCCcHHHHHHHHhhccCC-CEEEEEccCCCCceeecCHHHHhcCCeEEEEEec
Confidence            64 11236677777776 489999999998677888777664 56 99999998754 3456666545558899998877


Q ss_pred             ccc
Q 043260          327 GIK  329 (332)
Q Consensus       327 ~~~  329 (332)
                      .+.
T Consensus       320 ~~~  322 (373)
T cd08299         320 GWK  322 (373)
T ss_pred             CCc
Confidence            654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=3.6e-43  Score=328.63  Aligned_cols=274  Identities=23%  Similarity=0.328  Sum_probs=235.5

Q ss_pred             EEEecCC----CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           18 VVCWGEG----EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        18 ~~~~~~~----~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      +.+..++    ..++++++|.|+|+++||+|||+++|+|++|+. +.|.++...+|.++|||++|+|+++|++++++++|
T Consensus         2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   81 (329)
T TIGR02822         2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG   81 (329)
T ss_pred             eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence            4555554    248999999999999999999999999999999 87766544457899999999999999999999999


Q ss_pred             CEEEeecc-cCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           93 DIVIPTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        93 drV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      |||++.+. .+|+.|.+|++|++++|++..+.  |+..+|                  +|+||+.++.+.++++|+++++
T Consensus        82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~--g~~~~G------------------~~aey~~v~~~~~~~lP~~~~~  141 (329)
T TIGR02822        82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRYT--GWDTDG------------------GYAEYTTVPAAFAYRLPTGYDD  141 (329)
T ss_pred             CEEEEcCccCcCCCChHHhCcCcccCCCcccC--CcccCC------------------cceeEEEeccccEEECCCCCCH
Confidence            99987664 57999999999999999987654  554444                  5999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      ++++.+++++.|||+++ ...++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|++++++..+ 
T Consensus       142 ~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~~-  218 (329)
T TIGR02822       142 VELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAYD-  218 (329)
T ss_pred             HHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceeccccc-
Confidence            99999999999999988 46889999999999999999999999999999 7999999999999999999999987543 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeeccc
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                        ..          ..++|+++++.+..+.+..++++++++ |+++.+|.......++++..++. +++|.|++...
T Consensus       219 --~~----------~~~~d~~i~~~~~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~  282 (329)
T TIGR02822       219 --TP----------PEPLDAAILFAPAGGLVPPALEALDRG-GVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNT  282 (329)
T ss_pred             --cC----------cccceEEEECCCcHHHHHHHHHhhCCC-cEEEEEeccCccCCCCCHHHHhhCCcEEEEeecCC
Confidence              10          126899999998888999999999998 99999998643334577666555 88999987543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=2.6e-42  Score=326.55  Aligned_cols=299  Identities=26%  Similarity=0.397  Sum_probs=253.0

Q ss_pred             eeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCC------
Q 043260           16 AAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKE------   88 (332)
Q Consensus        16 ~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~------   88 (332)
                      ||++++++++.+++++++.|+|+++||+|||.++++|++|+. +.|.++...+|.++|||++|+|+++|++++.      
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~   81 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP   81 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence            789999988779999999999999999999999999999999 7776653567889999999999999999986      


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCC-ceEEcCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN-YVVKVDP  167 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~-~v~~lP~  167 (332)
                      |++||+|+..+..+|+.|.+|+.+.++.|++..+.  |...+-+           .....|+|+||+.++++ .++++|+
T Consensus        82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~--~~~~~~~-----------~~~~~g~~a~~~~v~~~~~~~~lP~  148 (361)
T cd08231          82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKY--GHEASCD-----------DPHLSGGYAEHIYLPPGTAIVRVPD  148 (361)
T ss_pred             cCCCCEEEEcccCCCCCChhHhCcCccccccchhc--ccccccc-----------CCCCCcccceEEEecCCCceEECCC
Confidence            99999999999999999999999999999987654  3322100           00113579999999986 7999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeC
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN  247 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~  247 (332)
                      ++++++++++++++.|||+++.+....++|++|||+|+|++|++++++|+.+|+++|+++++++++.++++++|++.+++
T Consensus       149 ~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~  228 (361)
T cd08231         149 NVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATID  228 (361)
T ss_pred             CCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEc
Confidence            99999999998999999999876666679999999999999999999999999878999999999999999999999988


Q ss_pred             CCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEEeec
Q 043260          248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      .+.....++.+.+.++++++++|++||++|+...+..++++++++ |+++.+|.... ...+++...++. ++++.+++.
T Consensus       229 ~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (361)
T cd08231         229 IDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHN  307 (361)
T ss_pred             CcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccC-CEEEEEcCCCCCCccccCHHHHhhcccEEEEccc
Confidence            765112223356788888889999999999867889999999998 99999997653 345666655555 999999876


Q ss_pred             ccc
Q 043260          326 GGI  328 (332)
Q Consensus       326 ~~~  328 (332)
                      ++.
T Consensus       308 ~~~  310 (361)
T cd08231         308 YDP  310 (361)
T ss_pred             CCc
Confidence            543

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=2.7e-42  Score=326.25  Aligned_cols=292  Identities=25%  Similarity=0.413  Sum_probs=243.0

Q ss_pred             ceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           13 YYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        13 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      ..++|+++++++.++++++++.|+|+++||+|||.++++|++|+. +.+.++...+|.++|||++|+|+++|+++++|++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~~   87 (357)
T PLN02514          8 KKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTV   87 (357)
T ss_pred             ceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcccccC
Confidence            459999999999999999999999999999999999999999999 7776544567899999999999999999999999


Q ss_pred             CCEEEeecc-cCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           92 GDIVIPTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        92 GdrV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      ||+|++.+. .+|+.|.+|++|.+++|++..+...+....|.             ...|+|+||+.++.+.++++|++++
T Consensus        88 Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~-------------~~~G~~aey~~v~~~~~~~iP~~~~  154 (357)
T PLN02514         88 GDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGK-------------PTQGGFASAMVVDQKFVVKIPEGMA  154 (357)
T ss_pred             CCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCc-------------cCCCccccEEEEchHHeEECCCCCC
Confidence            999986554 47999999999999999886322100001110             1135699999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~v~~~~  249 (332)
                      +++++.+++++.|||+++.+....++|++|+|+|+|++|++++|+|+.+|+ +|++++.++++++. ++++|++.+++..
T Consensus       155 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~~~  233 (357)
T PLN02514        155 PEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLVSS  233 (357)
T ss_pred             HHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEecCC
Confidence            999999999999999988665566899999999999999999999999999 78888877776654 4679999888764


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecccc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGGI  328 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~~  328 (332)
                      +   .   +.+.+.+.  ++|++||++|....+..++++++++ |+++.+|... ...+++...++. ++++.|++.++.
T Consensus       234 ~---~---~~~~~~~~--~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~~~~  303 (357)
T PLN02514        234 D---A---AEMQEAAD--SLDYIIDTVPVFHPLEPYLSLLKLD-GKLILMGVIN-TPLQFVTPMLMLGRKVITGSFIGSM  303 (357)
T ss_pred             C---h---HHHHHhcC--CCcEEEECCCchHHHHHHHHHhccC-CEEEEECCCC-CCCcccHHHHhhCCcEEEEEecCCH
Confidence            4   2   23445443  6999999999877889999999998 9999999875 345677777666 999999987653

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=6.9e-42  Score=322.47  Aligned_cols=286  Identities=28%  Similarity=0.462  Sum_probs=249.9

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCC---C--------CCCCCcccccceeEEEEEe
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGF---P--------LPLFPRVLGHEGVGMVESI   82 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~---~--------~~~~p~v~G~e~~G~Vv~v   82 (332)
                      |||+++++++. +++++++.|+|+++||+||+.++++|++|+. +.+..   +        ...+|.++|||++|+|+++
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   79 (351)
T cd08233           1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV   79 (351)
T ss_pred             CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence            78999998775 9999999999999999999999999999987 55321   1        1236889999999999999


Q ss_pred             CCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCce
Q 043260           83 GDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYV  162 (332)
Q Consensus        83 G~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v  162 (332)
                      |++++.+++||+|+..+..+|+.|.+|++|.++.|.+..+.  |+..                 ..|+|+||+.++...+
T Consensus        80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------------~~g~~a~~~~~~~~~~  140 (351)
T cd08233          80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFI--GLGG-----------------GGGGFAEYVVVPAYHV  140 (351)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCcee--ccCC-----------------CCCceeeEEEechHHe
Confidence            99999999999999999999999999999999999865432  2211                 0246999999999999


Q ss_pred             EEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC
Q 043260          163 VKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       163 ~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      +++|+++++++++.+ .++.|||+++ +..++++|++|+|+|+|.+|++++|+++.+|+++|+++++++++.++++++|+
T Consensus       141 ~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga  218 (351)
T cd08233         141 HKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA  218 (351)
T ss_pred             EECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence            999999999999876 5888999988 77889999999999999999999999999998789999999999999999999


Q ss_pred             CeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEE
Q 043260          243 TDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLK  321 (332)
Q Consensus       243 ~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~  321 (332)
                      +.++++++   .++.+.++++++++++|+|||++|....+..++++++++ |+++.+|... ...++++..++. +++|.
T Consensus       219 ~~~i~~~~---~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~i~  293 (351)
T cd08233         219 TIVLDPTE---VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWE-KPISFNPNDLVLKEKTLT  293 (351)
T ss_pred             CEEECCCc---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-CEEEEEccCC-CCCccCHHHHHhhCcEEE
Confidence            99999887   778888888888778999999999877889999999998 9999999876 556778777666 89999


Q ss_pred             Eeeccc
Q 043260          322 GTIFGG  327 (332)
Q Consensus       322 g~~~~~  327 (332)
                      |++.+.
T Consensus       294 g~~~~~  299 (351)
T cd08233         294 GSICYT  299 (351)
T ss_pred             EEeccC
Confidence            987653

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=2e-41  Score=321.25  Aligned_cols=308  Identities=43%  Similarity=0.757  Sum_probs=265.0

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      +||+++.+.+.++++++++.|+++++||+||+.++++|++|+. +.+..+ ..+|.++|||++|+|+++|++++.+++||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd   79 (365)
T cd05279           1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD   79 (365)
T ss_pred             CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence            4788999887779999999999999999999999999999999 777654 45678999999999999999999999999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCccc-cccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      +|+..+..+|+.|++|+.|.+++|....+. ..|...+|+.++.-.|....|....|+|++|+.++++.++++|++++++
T Consensus        80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~~  159 (365)
T cd05279          80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLE  159 (365)
T ss_pred             EEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCCCCHH
Confidence            999999999999999999999999887644 2455555655554455555555556789999999999999999999999


Q ss_pred             hhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP  252 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  252 (332)
                      +++.+++++.+||+++.+.+++++|++|||+|+|++|++++++++.+|+..|+++++++++++.++++|++++++..+  
T Consensus       160 ~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--  237 (365)
T cd05279         160 KVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRD--  237 (365)
T ss_pred             HhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeeccccc--
Confidence            999999999999998878889999999999988999999999999999856888888999999999999999998765  


Q ss_pred             Cc--hHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhc-cCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeecccc
Q 043260          253 NK--SISELVKEMTHGTGVDYGFECTGVASLISEALEATK-LGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIFGGI  328 (332)
Q Consensus       253 ~~--~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~-~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~~  328 (332)
                       .  ++.+.+.++++ .++|+|||++|....+..++++++ ++ |+++.+|.... ....++...+..+.++.|++.+++
T Consensus       238 -~~~~~~~~l~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  314 (365)
T cd05279         238 -QDKPIVEVLTEMTD-GGVDYAFEVIGSADTLKQALDATRLGG-GTSVVVGVPPSGTEATLDPNDLLTGRTIKGTVFGGW  314 (365)
T ss_pred             -ccchHHHHHHHHhC-CCCcEEEECCCCHHHHHHHHHHhccCC-CEEEEEecCCCCCceeeCHHHHhcCCeEEEEeccCC
Confidence             4  67777888775 589999999997678899999999 88 99999997642 456777777744888999876654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=2.6e-41  Score=320.45  Aligned_cols=307  Identities=37%  Similarity=0.674  Sum_probs=257.2

Q ss_pred             ceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           13 YYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        13 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      |+|||++++++++++++++.+.|++.++||+|||.++++|++|+. ..+.++ ..+|.++|||++|+|+++|+++..+++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP   79 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence            689999999877679999999999999999999999999999999 777654 356889999999999999999999999


Q ss_pred             CCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCccccc-ccce-ecccccCCceeeEEecCCceEEcCCC
Q 043260           92 GDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIR-GQKL-YHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        92 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~-~~~~-~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      ||+|++.+. +|+.|.+|+.+..++|.+..... .|..++|......+ +.+. -+.+..|+|++|+.++.+.++++|++
T Consensus        80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~  158 (365)
T cd08278          80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKD  158 (365)
T ss_pred             CCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCCC
Confidence            999998775 89999999999999998764321 23333332111000 0000 01223478999999999999999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      +++++++.+++++.||+.++.+...+++|++|||+|+|++|++++++|+.+|+..|++++++++|.+.++++|++.++++
T Consensus       159 ~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~  238 (365)
T cd08278         159 VPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINP  238 (365)
T ss_pred             CCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecC
Confidence            99999999999999999988788889999999999889999999999999999679999999999999999999999988


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEEeecc
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      +.   .++.+.+.+.+ +.++|+|+|++|++..+..++++++++ |+++.+|.... ....++...++. ++++.++...
T Consensus       239 ~~---~~~~~~v~~~~-~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (365)
T cd08278         239 KE---EDLVAAIREIT-GGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEG  313 (365)
T ss_pred             CC---cCHHHHHHHHh-CCCCcEEEECCCCcHHHHHHHHHhccC-CEEEEeCcCCCCCccccCHHHHhhcCceEEEeecC
Confidence            76   67778888877 668999999999877889999999998 99999997643 446777777634 8999887654

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=8.1e-42  Score=321.02  Aligned_cols=271  Identities=22%  Similarity=0.231  Sum_probs=221.3

Q ss_pred             ceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC----CCCCcccccceeEEEEEeCCCCC
Q 043260           13 YYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL----PLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        13 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~----~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      |..|+++++++++ +++++++.|+ +++||||||+++|||++|++ +.|.++.    ..+|.++|||++|+|+++|.+  
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--   76 (341)
T cd08237           1 MINQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--   76 (341)
T ss_pred             CcccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence            4568999999986 9999999995 99999999999999999999 8776532    357999999999999998764  


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      +|++||||++.+..+|+ |.+|  +..+.|.+..+.  |...+|                  +|+||+.+|+++++++|+
T Consensus        77 ~~~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~~--g~~~~G------------------~~aey~~v~~~~~~~vP~  133 (341)
T cd08237          77 TYKVGTKVVMVPNTPVE-KDEI--IPENYLPSSRFR--SSGYDG------------------FMQDYVFLPPDRLVKLPD  133 (341)
T ss_pred             ccCCCCEEEECCCCCch-hccc--chhccCCCccee--EecCCC------------------ceEEEEEEchHHeEECCC
Confidence            79999999998888887 5456  466788776543  443444                  599999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHh--hCCCCCCEEEEECCChHHHHHHHHHHH-cCCCeEEEEcCCcchHHHHHHcCCCe
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKE--FKVEKGSSVAVFGLGAVGLGVMDRARI-QGAAKIIGIDKNPCRKDKGEAFGMTD  244 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~--~~~~~g~~vlV~G~g~vG~~~~~la~~-~G~~~Vi~~~~~~~~~~~~~~lga~~  244 (332)
                      ++++++||++. +++++|+++...  ..+++|++|||+|+|++|++++|+++. +|..+|++++++++|++++++++++.
T Consensus       134 ~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~  212 (341)
T cd08237         134 NVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY  212 (341)
T ss_pred             CCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee
Confidence            99999888654 888999988543  356889999999999999999999986 66558999999999999998876653


Q ss_pred             eeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC---ChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEE
Q 043260          245 FINPDDEPNKSISELVKEMTHGTGVDYGFECTG---VASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNL  320 (332)
Q Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i  320 (332)
                      .++       ++       ....++|+|||++|   .+..+.+++++++++ |+++.+|... ...++++..++. +++|
T Consensus       213 ~~~-------~~-------~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~k~~~i  276 (341)
T cd08237         213 LID-------DI-------PEDLAVDHAFECVGGRGSQSAINQIIDYIRPQ-GTIGLMGVSE-YPVPINTRMVLEKGLTL  276 (341)
T ss_pred             ehh-------hh-------hhccCCcEEEECCCCCccHHHHHHHHHhCcCC-cEEEEEeecC-CCcccCHHHHhhCceEE
Confidence            321       11       11236999999999   456789999999998 9999999765 446777776665 9999


Q ss_pred             EEeeccc
Q 043260          321 KGTIFGG  327 (332)
Q Consensus       321 ~g~~~~~  327 (332)
                      .|+..++
T Consensus       277 ~g~~~~~  283 (341)
T cd08237         277 VGSSRST  283 (341)
T ss_pred             EEecccC
Confidence            9987653

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=9e-41  Score=312.76  Aligned_cols=282  Identities=26%  Similarity=0.421  Sum_probs=247.6

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||+++++++.++++++++.|++.++||+||+.++++|++|+. +.|..+...+|.++|||++|+|+++|++++++++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd   80 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD   80 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence            7999999986569999999999999999999999999999999 877655456788999999999999999999999999


Q ss_pred             EEEeec-ccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           94 IVIPTF-IGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        94 rV~~~~-~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      +|++.+ ...|++|.+|+.|.++.|....+.  |+..+|                  +|++|+.++...++++|++++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~--~~~~~g------------------~~a~~~~v~~~~~~~lp~~~~~~  140 (333)
T cd08296          81 RVGVGWHGGHCGTCDACRRGDFVHCENGKVT--GVTRDG------------------GYAEYMLAPAEALARIPDDLDAA  140 (333)
T ss_pred             EEEeccccCCCCCChhhhCcCcccCCCCCcc--CcccCC------------------cceeEEEEchhheEeCCCCCCHH
Confidence            998754 578999999999999999987644  443334                  59999999999999999999999


Q ss_pred             hhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP  252 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  252 (332)
                      +++.+++++.+||+++. ...++++++|||+|+|++|++++++|+.+|+ +|+++++++++++.++++|+++++++..  
T Consensus       141 ~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~--  216 (333)
T cd08296         141 EAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSK--  216 (333)
T ss_pred             HhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCC--
Confidence            99999999999999884 4589999999999999999999999999999 8999999999999999999999998876  


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                       .++.+.+.++   .++|++||++|....+..++++++++ |+++.+|... ...+++...++. +++|.|+..+
T Consensus       217 -~~~~~~~~~~---~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~  285 (333)
T cd08296         217 -EDVAEALQEL---GGAKLILATAPNAKAISALVGGLAPR-GKLLILGAAG-EPVAVSPLQLIMGRKSIHGWPSG  285 (333)
T ss_pred             -ccHHHHHHhc---CCCCEEEECCCchHHHHHHHHHcccC-CEEEEEecCC-CCCCcCHHHHhhcccEEEEeCcC
Confidence             6677667665   26999999998667889999999998 9999999876 456677666556 9999998754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=2.6e-40  Score=313.25  Aligned_cols=308  Identities=35%  Similarity=0.638  Sum_probs=259.0

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||++++.++.++++++++.|+++++||+||+.++++|++|+. +.+.++ ..+|.++|||++|+|+++|++++.+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD   79 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence            7999999987779999999999999999999999999999999 777654 45678999999999999999999999999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhh
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSL  173 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~  173 (332)
                      +|+..+..+|++|++|+++++++|++....-+|..+++...+...|...+.....|+|++|+.++.+.++++|+++++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~  159 (363)
T cd08279          80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDR  159 (363)
T ss_pred             EEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCCChHH
Confidence            99999999999999999999999998753222322222211111111111122347899999999999999999999999


Q ss_pred             hhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          174 AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       174 aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      ++.+++++.+||.++....+++++++|||+|+|++|++++++++..|+.+|+++++++++.+.++++|++++++.+.   
T Consensus       160 aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~---  236 (363)
T cd08279         160 AALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASE---  236 (363)
T ss_pred             eehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCC---
Confidence            99999999999998878888999999999988999999999999999955999999999999999999999998876   


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEEeeccc
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      .++...+.+++.++++|++||++++...+..++++++++ |+++.+|.... ....++...+.. +.++.++.++.
T Consensus       237 ~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (363)
T cd08279         237 DDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGS  311 (363)
T ss_pred             ccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcC-CeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecC
Confidence            677788888877778999999999767889999999998 99999997653 456677777665 77888876543

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=7.3e-40  Score=306.92  Aligned_cols=281  Identities=21%  Similarity=0.319  Sum_probs=237.9

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||+++++++. +++++++.|+|+++|++||+.++++|++|+. +.+..+...+|.++|||++|+|+++|++++.+++||
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   79 (339)
T PRK10083          1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE   79 (339)
T ss_pred             CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence            68999998875 9999999999999999999999999999999 777665456789999999999999999999999999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhh
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSL  173 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~  173 (332)
                      +|++.+..+|+.|.+|.+|.+++|.+..+.  ++..+                  |+|+||+.++.+.++++|+++++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------g~~~~~~~~~~~~~~~ip~~~~~~~  139 (339)
T PRK10083         80 RVAVDPVISCGHCYPCSIGKPNVCTSLVVL--GVHRD------------------GGFSEYAVVPAKNAHRIPDAIADQY  139 (339)
T ss_pred             EEEEccccCCCCCccccCcCcccCCCCceE--EEccC------------------CcceeeEEechHHeEECcCCCCHHH
Confidence            999999999999999999999999765432  33333                  3599999999999999999999988


Q ss_pred             hhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHH-cCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCC
Q 043260          174 AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARI-QGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP  252 (332)
Q Consensus       174 aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~-~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  252 (332)
                      ++ +..++.++++ +.+..++++|++|+|+|+|++|++++|+++. +|+..|++++++++|+++++++|+++++++++  
T Consensus       140 a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~--  215 (339)
T PRK10083        140 AV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ--  215 (339)
T ss_pred             Hh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc--
Confidence            77 4467888886 4477899999999999999999999999996 69866888999999999999999999998876  


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                       .++.+.+...  +.++|++||++|++..+..++++++++ |+++.+|.... ...++...+.. ++++.++..
T Consensus       216 -~~~~~~~~~~--g~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~  284 (339)
T PRK10083        216 -EPLGEALEEK--GIKPTLIIDAACHPSILEEAVTLASPA-ARIVLMGFSSE-PSEIVQQGITGKELSIFSSRL  284 (339)
T ss_pred             -ccHHHHHhcC--CCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-CceecHHHHhhcceEEEEEec
Confidence             5566655432  335689999999767899999999998 99999998653 34445544444 777777654

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=5.9e-41  Score=288.19  Aligned_cols=253  Identities=24%  Similarity=0.297  Sum_probs=231.1

Q ss_pred             ccccceeeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCC
Q 043260            9 FLKIYYAAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus         9 ~~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      ...|+..|-+++++.+..  +++++.|.|+|.++|++||..|+|+|+.|.. ..|-+...++|+++|.|++|+|+++|++
T Consensus         3 ~~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~g   82 (336)
T KOG1197|consen    3 AASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEG   82 (336)
T ss_pred             CCCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCC
Confidence            356788899999877654  9999999999999999999999999999999 8888877899999999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEc
Q 043260           86 VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKV  165 (332)
Q Consensus        86 v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~l  165 (332)
                      |+++++||||+...                                               ..|.|+|+..+|...++++
T Consensus        83 vtdrkvGDrVayl~-----------------------------------------------~~g~yaee~~vP~~kv~~v  115 (336)
T KOG1197|consen   83 VTDRKVGDRVAYLN-----------------------------------------------PFGAYAEEVTVPSVKVFKV  115 (336)
T ss_pred             ccccccccEEEEec-----------------------------------------------cchhhheeccccceeeccC
Confidence            99999999997321                                               1356999999999999999


Q ss_pred             CCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe
Q 043260          166 DPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD  244 (332)
Q Consensus       166 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~  244 (332)
                      |+.+++.+||++.....|||.-+++...+++|++|||+.+ |++|+++.|+++..|. ++|.+.++++|.+.+++.|+.+
T Consensus       116 pe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~h  194 (336)
T KOG1197|consen  116 PEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAEH  194 (336)
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCcc
Confidence            9999999999999999999998888899999999999976 9999999999999999 9999999999999999999999


Q ss_pred             eeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhH
Q 043260          245 FINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI  314 (332)
Q Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~  314 (332)
                      .|+++.   +++.+.+.+.++++|+|+++|++|. +++...+.+|++. |.+|.+|+.++..-+++...+
T Consensus       195 ~I~y~~---eD~v~~V~kiTngKGVd~vyDsvG~-dt~~~sl~~Lk~~-G~mVSfG~asgl~~p~~l~~l  259 (336)
T KOG1197|consen  195 PIDYST---EDYVDEVKKITNGKGVDAVYDSVGK-DTFAKSLAALKPM-GKMVSFGNASGLIDPIPLNQL  259 (336)
T ss_pred             eeeccc---hhHHHHHHhccCCCCceeeeccccc-hhhHHHHHHhccC-ceEEEeccccCCCCCeehhhc
Confidence            999998   9999999999999999999999999 6999999999998 999999998884444444443

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1e-39  Score=307.52  Aligned_cols=287  Identities=27%  Similarity=0.416  Sum_probs=243.8

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC---------CCCCCcccccceeEEEEEeCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP---------LPLFPRVLGHEGVGMVESIGD   84 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~---------~~~~p~v~G~e~~G~Vv~vG~   84 (332)
                      |||++++++++ +++++.+.|++.+++|+||+.++++|+.|+. ..|...         ...+|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~   79 (350)
T cd08256           1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE   79 (350)
T ss_pred             CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence            68999998876 9999999999999999999999999999998 666421         114678899999999999999


Q ss_pred             CCC--CCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCC-c
Q 043260           85 EVK--ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN-Y  161 (332)
Q Consensus        85 ~v~--~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~-~  161 (332)
                      +++  .|++||+|+..+..+|+.|.+|++|++++|+....  .|+...                ..|+|++|+.++++ .
T Consensus        80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~----------------~~g~~~~~~~~~~~~~  141 (350)
T cd08256          80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL--YGFQNN----------------VNGGMAEYMRFPKEAI  141 (350)
T ss_pred             CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc--eeeccC----------------CCCcceeeEEcccccc
Confidence            999  89999999999999999999999999999986432  244211                12469999999987 6


Q ss_pred             eEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC
Q 043260          162 VVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG  241 (332)
Q Consensus       162 v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg  241 (332)
                      ++++|+++++++++.+ .++.++|+++ +..++++|++|+|.|+|.+|++++++|+.+|+..|+++++++++.++++++|
T Consensus       142 ~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g  219 (350)
T cd08256         142 VHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFG  219 (350)
T ss_pred             eEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcC
Confidence            7899999999999988 7999999987 7789999999999777999999999999999867888999999999999999


Q ss_pred             CCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhH--hcCcE
Q 043260          242 MTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI--ALGRN  319 (332)
Q Consensus       242 a~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~--~~~~~  319 (332)
                      ++.+++...   .++.+.+.+++++.++|++||++|+...+..++++++++ |+++.+|.... ...++...+  ..+++
T Consensus       220 ~~~v~~~~~---~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~  294 (350)
T cd08256         220 ADVVLNPPE---VDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKL-GRFVEFSVFGD-PVTVDWSIIGDRKELD  294 (350)
T ss_pred             CcEEecCCC---cCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEccCCC-CCccChhHhhcccccE
Confidence            999998876   778888888888888999999999766888999999998 99999997653 333444443  23777


Q ss_pred             EEEeeccc
Q 043260          320 LKGTIFGG  327 (332)
Q Consensus       320 i~g~~~~~  327 (332)
                      +.|+....
T Consensus       295 i~~~~~~~  302 (350)
T cd08256         295 VLGSHLGP  302 (350)
T ss_pred             EEEeccCc
Confidence            88776543

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=1e-39  Score=307.71  Aligned_cols=288  Identities=26%  Similarity=0.362  Sum_probs=245.0

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||+++++++. +++++.+.|.+.++||+|||.++++|++|+. +.+.++...+|.++|||++|+|+++|++++++++||
T Consensus         1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd   79 (351)
T cd08285           1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD   79 (351)
T ss_pred             CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence            79999999886 8999999999999999999999999999998 777655456789999999999999999999999999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCC--ceEEcCCCCCh
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN--YVVKVDPSIDL  171 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~--~v~~lP~~~~~  171 (332)
                      +|+..+..+|+.|..|+.|..+.|.+..   .|....              ....|+|+||+.++.+  .++++|+++++
T Consensus        80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~---~~~~~~--------------~~~~g~~~~y~~v~~~~~~~~~lP~~~~~  142 (351)
T cd08285          80 RVIVPAITPDWRSVAAQRGYPSQSGGML---GGWKFS--------------NFKDGVFAEYFHVNDADANLAPLPDGLTD  142 (351)
T ss_pred             EEEEcCcCCCCCCHHHHCcCcccCcCCC---CCcccc--------------CCCCcceeEEEEcchhhCceEECCCCCCH
Confidence            9999888899999999999999998753   121110              0112569999999874  89999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      ++++.++.++.||++++ +...+++|++|||+|+|++|++++|+++.+|+..|+++++++++.++++++|+++++++.. 
T Consensus       143 ~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~-  220 (351)
T cd08285         143 EQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKN-  220 (351)
T ss_pred             HHhhhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCC-
Confidence            99999988999999986 6788999999999988999999999999999966999999999999999999999999876 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhH--hc-CcEEEEeec
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAI--AL-GRNLKGTIF  325 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~--~~-~~~i~g~~~  325 (332)
                        .++.+.+.+++.+.++|++||++|+.+.+..++++++++ |+++.+|.... ...+++...+  .. ..++.+++.
T Consensus       221 --~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  295 (351)
T cd08285         221 --GDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLC  295 (351)
T ss_pred             --CCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCCCceeecChhhhhhhccccEEEEeec
Confidence              677788888877778999999999877889999999998 99999998764 3344443222  22 556666543

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=2.3e-39  Score=303.55  Aligned_cols=285  Identities=27%  Similarity=0.425  Sum_probs=249.7

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC---CCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP---LPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||+++++++.++++.+.+.|++.++||+||+.++++|++|+. ..+.++   ...+|.++|||++|+|+++|+++..++
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~   80 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK   80 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence            6899999887779999999999999999999999999999998 776553   245688999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+..+...|+.|.+|+.|.+++|++..+.  |+..+|                  +|++|+.++.+.++++|++++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g------------------~~~~~~~v~~~~~~~~P~~ls  140 (340)
T cd05284          81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARFP--GIGTDG------------------GFAEYLLVPSRRLVKLPRGLD  140 (340)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCCCCccc--CccCCC------------------cceeeEEecHHHeEECCCCCC
Confidence            999999999899999999999999999998876  664444                  499999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHh-hCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKE-FKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~-~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +++++.++..+.|||+++.+. ..+.++++|||+|+|.+|++++++++..|..+|+++++++++.+.++++|++++++++
T Consensus       141 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~  220 (340)
T cd05284         141 PVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNAS  220 (340)
T ss_pred             HHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCC
Confidence            999999999999999998665 4688999999999988999999999999933899999999999999999999999887


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHh-HhcCcEEEEeecc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPA-IALGRNLKGTIFG  326 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~-~~~~~~i~g~~~~  326 (332)
                      .   . +.+.+.+++++.++|+++|++|+...+..++++++++ |+++.+|....  .+++... +.+++++.++...
T Consensus       221 ~---~-~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~~  291 (340)
T cd05284         221 D---D-VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGH--GRLPTSDLVPTEISVIGSLWG  291 (340)
T ss_pred             c---c-HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEEcCCCC--CccCHHHhhhcceEEEEEecc
Confidence            6   5 7778888887778999999999867889999999998 99999997652  4555554 3348888887643

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=3.9e-39  Score=307.75  Aligned_cols=299  Identities=29%  Similarity=0.381  Sum_probs=247.2

Q ss_pred             eeeEEEecCCCCeEEEEEecCCC-CCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPP-KATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||+++++++. +++++++.|+| ++++|+||+.++++|++|+. +.|.++..++|.++|||++|+|+++|++++++++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   79 (386)
T cd08283           1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG   79 (386)
T ss_pred             CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence            78999998765 99999999998 49999999999999999999 88877666678999999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCcccc-----ccccCCCCCcccccccceecccccCCceeeEEecCC--ceEEc
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTF-----HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN--YVVKV  165 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-----~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~--~v~~l  165 (332)
                      |+|+..+..+||+|++|..+.+++|++.....     .|....+.....    .++ ....|+|+||+.++.+  .++++
T Consensus        80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~g~~~~~~~v~~~~~~~~~l  154 (386)
T cd08283          80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYS----HLT-GGYAGGQAEYVRVPFADVGPFKI  154 (386)
T ss_pred             CEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccc----ccc-CCCCCeeEEEEEcccccCeEEEC
Confidence            99999998899999999999999999876431     011110100000    000 0113679999999987  89999


Q ss_pred             CCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee
Q 043260          166 DPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF  245 (332)
Q Consensus       166 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v  245 (332)
                      |+++++++++.++.++.|||+++ +..++++|++|||+|+|++|++++++|+..|..+|+++++++++++.+++++...+
T Consensus       155 p~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~v  233 (386)
T cd08283         155 PDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAET  233 (386)
T ss_pred             CCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEE
Confidence            99999999999999999999998 78899999999999889999999999999998569999999999999999855577


Q ss_pred             eCCCCCCCc-hHHHHHHHhcCCCCccEEEEcCCC---------------------hHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          246 INPDDEPNK-SISELVKEMTHGTGVDYGFECTGV---------------------ASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       246 ~~~~~~~~~-~~~~~~~~~~~~~g~d~vid~~g~---------------------~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +++..   . ++.+.+.++++++++|+|||++|+                     ...+..++++++++ |+++.+|...
T Consensus       234 i~~~~---~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~g~~~  309 (386)
T cd08283         234 INFEE---VDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKG-GTVSIIGVYG  309 (386)
T ss_pred             EcCCc---chHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccC-CEEEEEcCCC
Confidence            77765   4 477888888887789999999975                     24678999999998 9999999876


Q ss_pred             CCcccCChHhHhc-CcEEEEee
Q 043260          304 EAKVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       304 ~~~~~~~~~~~~~-~~~i~g~~  324 (332)
                      .....++...++. ++++.++.
T Consensus       310 ~~~~~~~~~~~~~~~~~i~~~~  331 (386)
T cd08283         310 GTVNKFPIGAAMNKGLTLRMGQ  331 (386)
T ss_pred             CCcCccCHHHHHhCCcEEEecc
Confidence            4345566644444 88888874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=4.3e-39  Score=302.37  Aligned_cols=287  Identities=31%  Similarity=0.435  Sum_probs=245.8

Q ss_pred             eeeEEEecCCCCeEEEEEecCCC-CCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPP-KATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||+++.+++. +++.++|.|.| .++||+||+.++++|++|+. +.+.++..++|.++|||++|+|+++|++++.+++|
T Consensus         1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (347)
T cd05278           1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG   79 (347)
T ss_pred             CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence            68999998876 89999999999 89999999999999999999 88777656778999999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccc-cccCCCCCcccccccceecccccCCceeeEEecCC--ceEEcCCCC
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFH-GLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN--YVVKVDPSI  169 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~-g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~--~v~~lP~~~  169 (332)
                      |+|+..+..+||.|.+|++|++++|++.....+ +...                  .|+|++|+.++.+  .++++|+++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~g~~~~~~~v~~~~~~~~~lP~~~  141 (347)
T cd05278          80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRI------------------DGGQAEYVRVPYADMNLAKIPDGL  141 (347)
T ss_pred             CEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCC------------------CCeeeEEEEecchhCeEEECCCCC
Confidence            999999999999999999999999998764421 1112                  2469999999987  999999999


Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      ++++++.++.++.|||+++ ...++++|++|||.|+|++|++++|+|+.+|...|+++++++++.+.++++|++.+++++
T Consensus       142 ~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~  220 (347)
T cd05278         142 PDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPK  220 (347)
T ss_pred             CHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCC
Confidence            9999999999999999987 678899999999988899999999999999965788888888899999999999999887


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCc-ccCChHhHhcCcEEEEeec
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VPLNFPAIALGRNLKGTIF  325 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~-~~~~~~~~~~~~~i~g~~~  325 (332)
                      .   .++.+.+.+++++.++|++||++++...+..++++++++ |+++.+|...... .......+..++++.++..
T Consensus       221 ~---~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (347)
T cd05278         221 N---GDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLV  293 (347)
T ss_pred             c---chHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcC-CEEEEEcCCCCCcccCccchhhhceeEEEeecc
Confidence            7   678888888887778999999999866889999999998 9999999665321 1122222233777777643

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=4.1e-39  Score=308.18  Aligned_cols=295  Identities=16%  Similarity=0.173  Sum_probs=245.6

Q ss_pred             ccceeeeEEEec--CC---CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC----------CCCCCcccccc
Q 043260           11 KIYYAAAVVCWG--EG---EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP----------LPLFPRVLGHE   74 (332)
Q Consensus        11 ~~~~~~a~~~~~--~~---~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~----------~~~~p~v~G~e   74 (332)
                      +|.+|||++++.  .+   +.+++++++.|.++++||+||+.++++|++|+. +.+...          ....+.++|||
T Consensus         9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e   88 (393)
T cd08246           9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD   88 (393)
T ss_pred             CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence            678899998863  22   238899999999999999999999999999998 655411          11123588999


Q ss_pred             eeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceee
Q 043260           75 GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEY  154 (332)
Q Consensus        75 ~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~  154 (332)
                      ++|+|+++|++++.+++||+|+..+...|+.|.+|+.+.+++|+...+.  |+...                 .|+|++|
T Consensus        89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~--g~~~~-----------------~g~~a~y  149 (393)
T cd08246          89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIW--GYETN-----------------YGSFAQF  149 (393)
T ss_pred             eEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccc--cccCC-----------------CCcceeE
Confidence            9999999999999999999999999999999999999999999876444  54311                 2459999


Q ss_pred             EEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHh--hCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          155 MVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKE--FKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       155 ~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~--~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      +.++...++++|+++++++++.+++++.|||+++...  +++++|++|+|+|+ |++|++++++++.+|+ +++++++++
T Consensus       150 ~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~s~  228 (393)
T cd08246         150 ALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVSSE  228 (393)
T ss_pred             EEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeCCH
Confidence            9999999999999999999999999999999988654  67899999999998 9999999999999999 788889999


Q ss_pred             chHHHHHHcCCCeeeCCCCCC-------------------CchHHHHHHHhcCCC-CccEEEEcCCChHHHHHHHHHhcc
Q 043260          232 CRKDKGEAFGMTDFINPDDEP-------------------NKSISELVKEMTHGT-GVDYGFECTGVASLISEALEATKL  291 (332)
Q Consensus       232 ~~~~~~~~lga~~v~~~~~~~-------------------~~~~~~~~~~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~  291 (332)
                      ++++.++++|++.+++.+...                   ...+.+.+.+++++. ++|+|||++|+ ..+..+++++++
T Consensus       229 ~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~  307 (393)
T cd08246         229 EKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDR  307 (393)
T ss_pred             HHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhcc
Confidence            999999999999999864310                   013567788888887 89999999998 578999999999


Q ss_pred             CCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeeccc
Q 043260          292 GKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       292 ~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      + |+++.+|........++...++. +.++.|+..++
T Consensus       308 ~-G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~~  343 (393)
T cd08246         308 G-GMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFAN  343 (393)
T ss_pred             C-CEEEEEcccCCCCCCCcHHHHhhheeEEEecccCc
Confidence            8 99999997654334566666555 88888876544

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=1.4e-38  Score=299.12  Aligned_cols=286  Identities=28%  Similarity=0.432  Sum_probs=248.9

Q ss_pred             eeeEEEecCCCCeEEEEEecCCC-CCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPP-KATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||+++++++. +++++.+.|+| .++||+||++++++|++|+. +.|.++...+|.++|||++|+|+++|++++.+++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G   79 (345)
T cd08286           1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG   79 (345)
T ss_pred             CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence            68999998886 99999999996 79999999999999999999 87776555568899999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCC--ceEEcCCCCC
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN--YVVKVDPSID  170 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~--~v~~lP~~~~  170 (332)
                      |+|+..+...|+.|.+|..+.+++|...... .|...+                  |+|++|+.++.+  .++++|++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------------g~~~~~~~v~~~~~~~~~lp~~~~  140 (345)
T cd08286          80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI-LGNLID------------------GTQAEYVRIPHADNSLYKLPEGVD  140 (345)
T ss_pred             CEEEECCcCCCCCChHHHCcCcccCCCcccc-cccccC------------------CeeeeEEEcccccCceEECCCCCC
Confidence            9999999999999999999999999876432 232223                  459999999987  9999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      +.+++.++.++.+||+++....++++|+++||.|+|++|++++|+++.+|..+|++++++++|.+.++++|++.++++..
T Consensus       141 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~  220 (345)
T cd08286         141 EEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK  220 (345)
T ss_pred             HHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceecccc
Confidence            99999999999999987767788999999999988999999999999999448999999999999999999999998876


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                         .++.+.+.+++++.++|++||+++....+..+++.++++ |+++.+|... ...++++..++. ++++.+...
T Consensus       221 ---~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~  291 (345)
T cd08286         221 ---GDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHG-KPVDLHLEKLWIKNITITTGLV  291 (345)
T ss_pred             ---ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-cEEEEecccC-CCCCcCHHHHhhcCcEEEeecC
Confidence               667777888877778999999999877889999999998 9999999765 346677766444 888887544

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=1.3e-38  Score=306.31  Aligned_cols=279  Identities=19%  Similarity=0.292  Sum_probs=224.9

Q ss_pred             ceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-c-cCCCCC------CCCCcccccceeEEEEEeCC
Q 043260           13 YYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-S-SKGFPL------PLFPRVLGHEGVGMVESIGD   84 (332)
Q Consensus        13 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~-~g~~~~------~~~p~v~G~e~~G~Vv~vG~   84 (332)
                      |+||++++++++. ++++++|.|+|+++||+|||.++|||++|++ + .+....      ..+|.++|||++|+|+++|+
T Consensus         1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            6799999999886 9999999999999999999999999999998 5 343211      24788999999999999999


Q ss_pred             CCC-CCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCC---
Q 043260           85 EVK-ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN---  160 (332)
Q Consensus        85 ~v~-~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~---  160 (332)
                      +|+ .|++||||++.+...|+.|.+|. +            .|+..+|                  +|+||+.++.+   
T Consensus        80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~------------~g~~~~G------------------~~aey~~v~~~~~~  128 (410)
T cd08238          80 KWQGKYKPGQRFVIQPALILPDGPSCP-G------------YSYTYPG------------------GLATYHIIPNEVME  128 (410)
T ss_pred             CccCCCCCCCEEEEcCCcCCCCCCCCC-C------------ccccCCC------------------cceEEEEecHHhcc
Confidence            998 59999999999999999888772 1            1332333                  59999999986   


Q ss_pred             -ceEEcCCCCChhhhhhcccchh---hhHHHH--------HHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcC--CCeEE
Q 043260          161 -YVVKVDPSIDLSLAGFLSCGYS---SGFGAA--------WKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQG--AAKII  225 (332)
Q Consensus       161 -~v~~lP~~~~~~~aa~l~~~~~---ta~~al--------~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G--~~~Vi  225 (332)
                       .++++|+++++++++.+. +++   +++.++        .+.+++++|++|+|+|+ |++|++++|+|+.+|  +.+|+
T Consensus       129 ~~~~~lP~~l~~~~aal~e-pl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi  207 (410)
T cd08238         129 QDCLLIYEGDGYAEASLVE-PLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLV  207 (410)
T ss_pred             CCeEECCCCCCHHHHhhcc-hHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEE
Confidence             689999999999998652 221   233332        24568899999999985 999999999999975  45799


Q ss_pred             EEcCCcchHHHHHHc--------CCC-eeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEE
Q 043260          226 GIDKNPCRKDKGEAF--------GMT-DFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKV  296 (332)
Q Consensus       226 ~~~~~~~~~~~~~~l--------ga~-~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~  296 (332)
                      +++++++|++.++++        |++ .++++.+  .+++.+.+++++++.++|++||++|.++.+..++++++++ |++
T Consensus       208 ~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~--~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~-G~~  284 (410)
T cd08238         208 VTDVNDERLARAQRLFPPEAASRGIELLYVNPAT--IDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPD-GCL  284 (410)
T ss_pred             EEcCCHHHHHHHHHhccccccccCceEEEECCCc--cccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccC-CeE
Confidence            999999999999997        776 5676643  1457778888888889999999999888999999999998 887


Q ss_pred             EEEcCC-CC-CcccCChHhHhc-CcEEEEeeccc
Q 043260          297 MAIGAA-NE-AKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       297 v~~G~~-~~-~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      +.++.. .. ...++++..++. +++|.|+..++
T Consensus       285 v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  318 (410)
T cd08238         285 NFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGN  318 (410)
T ss_pred             EEEEccCCCCccccccHHHhhhcCcEEEEeCCCC
Confidence            776443 21 235677777766 99999987654

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=4.1e-39  Score=294.67  Aligned_cols=238  Identities=24%  Similarity=0.347  Sum_probs=202.9

Q ss_pred             ccccceeEEEEEeCCCCC------CCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCccccccccee
Q 043260           70 VLGHEGVGMVESIGDEVK------ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLY  143 (332)
Q Consensus        70 v~G~e~~G~Vv~vG~~v~------~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~  143 (332)
                      ++|||++|+|+++|++|+      ++++||||++.+..+|+.|++|+.|++++|++....  |+...+.           
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~--g~~~~~~-----------   67 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY--GHEALDS-----------   67 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhc--CcccccC-----------
Confidence            579999999999999999      899999999999999999999999999999986544  4322100           


Q ss_pred             cccccCCceeeEEecCC-ceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCC
Q 043260          144 HIFTCSTMTEYMVVDAN-YVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAA  222 (332)
Q Consensus       144 ~~~~~G~~a~~~~v~~~-~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~  222 (332)
                      .....|+|+||+.+++. .++++|+++++++++.+++++.|+|+++ +.....+|++|||+|+|++|++++|+|+.+|++
T Consensus        68 ~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~  146 (280)
T TIGR03366        68 GWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAA  146 (280)
T ss_pred             CccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            00113569999999987 7999999999999999999999999987 445667999999999999999999999999995


Q ss_pred             eEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          223 KIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       223 ~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +|++++++++|+++++++|++.+++..+     ..+.+.+++++.++|+|||++|.+..+.+++++++++ |+++.+|..
T Consensus       147 ~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~-----~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~  220 (280)
T TIGR03366       147 RVVAADPSPDRRELALSFGATALAEPEV-----LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAGSV  220 (280)
T ss_pred             EEEEECCCHHHHHHHHHcCCcEecCchh-----hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEeccC
Confidence            5999999999999999999999988643     2455677777778999999999888899999999998 999999976


Q ss_pred             CC-CcccCChHhHhc-CcEEEEeeccc
Q 043260          303 NE-AKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       303 ~~-~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      .. ...++++..+++ +++|.|+..++
T Consensus       221 ~~~~~~~i~~~~~~~~~~~i~g~~~~~  247 (280)
T TIGR03366       221 FPGGPVALDPEQVVRRWLTIRGVHNYE  247 (280)
T ss_pred             CCCCceeeCHHHHHhCCcEEEecCCCC
Confidence            43 456788888777 99999987654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3e-38  Score=296.79  Aligned_cols=286  Identities=24%  Similarity=0.417  Sum_probs=249.8

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||+++..++.++++++.+.|.+.++||+||+.++++|++|+. +.+..+...+|.++|||++|.|+++|++++.+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd   80 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD   80 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence            7999999887779999999999999999999999999999998 777665556788999999999999999999999999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCC--ceEEcCCCCCh
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN--YVVKVDPSIDL  171 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~--~v~~lP~~~~~  171 (332)
                      +|+..++.+|++|.+|+.|.+++|+++.+.  |+..+|                  +|++|+.++..  .++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g------------------~~~~~~~v~~~~~~~~~iP~~~~~  140 (345)
T cd08260          81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQP--GFTHPG------------------SFAEYVAVPRADVNLVRLPDDVDF  140 (345)
T ss_pred             EEEECCCCCCCCCccccCcCcccCCCCccc--ccCCCC------------------cceeEEEcccccCceEECCCCCCH
Confidence            998878889999999999999999997543  443334                  59999999974  99999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      ++++.++.++.|||+++.+..++.++++|+|+|+|++|++++++++..|+ +|+++++++++++.++++|++++++.+. 
T Consensus       141 ~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~-  218 (345)
T cd08260         141 VTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASE-  218 (345)
T ss_pred             HHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEcccc-
Confidence            99999999999999998777889999999999999999999999999999 8999999999999999999999998753 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-Cc-ccCChHhHhc-CcEEEEeec
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AK-VPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~-~~~~~~~~~~-~~~i~g~~~  325 (332)
                       ..++.+.+.++..+ ++|++||++|+...+...+++++++ |+++.+|.... .. .++++..++. ++++.++..
T Consensus       219 -~~~~~~~~~~~~~~-~~d~vi~~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (345)
T cd08260         219 -VEDVAAAVRDLTGG-GAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHG  292 (345)
T ss_pred             -chhHHHHHHHHhCC-CCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCc
Confidence             24566777777777 8999999999767888999999998 99999998764 22 5667666644 888888754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=2.1e-38  Score=298.49  Aligned_cols=287  Identities=26%  Similarity=0.418  Sum_probs=246.8

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC------------CCCCCcccccceeEEEEE
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP------------LPLFPRVLGHEGVGMVES   81 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~------------~~~~p~v~G~e~~G~Vv~   81 (332)
                      |||+++..++.+++++++|.|++.++||+||+.++++|++|+. +.+.++            ...+|.++|||++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~   80 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA   80 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence            7999998888779999999999999999999999999999998 766543            234578899999999999


Q ss_pred             eCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCc
Q 043260           82 IGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANY  161 (332)
Q Consensus        82 vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~  161 (332)
                      +|++++.+++||+|+..|...|+.|.+|.++.+++|....+.  |....                  |+|++|+.++.+.
T Consensus        81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------g~~~~~~~~~~~~  140 (350)
T cd08240          81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRAL--GIFQD------------------GGYAEYVIVPHSR  140 (350)
T ss_pred             eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCce--eeecc------------------CcceeeEEecHHH
Confidence            999999999999999999999999999999999999876544  33333                  3599999999999


Q ss_pred             eEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC
Q 043260          162 VVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG  241 (332)
Q Consensus       162 v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg  241 (332)
                      ++++|+++++.+++.+.+.+.|||+++.+...+.++++|+|+|+|++|++++|+|+..|+++|+++++++++++.++++|
T Consensus       141 ~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g  220 (350)
T cd08240         141 YLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAG  220 (350)
T ss_pred             eeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC
Confidence            99999999999999999999999999876666678999999988999999999999999978999999999999999999


Q ss_pred             CCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHh-cCcEE
Q 043260          242 MTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIA-LGRNL  320 (332)
Q Consensus       242 a~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~-~~~~i  320 (332)
                      ++.+++.++   .++.+.+.+..++ ++|++||++|....+..++++++++ |+++.+|.... ...++...+. .++++
T Consensus       221 ~~~~~~~~~---~~~~~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~i  294 (350)
T cd08240         221 ADVVVNGSD---PDAAKRIIKAAGG-GVDAVIDFVNNSATASLAFDILAKG-GKLVLVGLFGG-EATLPLPLLPLRALTI  294 (350)
T ss_pred             CcEEecCCC---ccHHHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHhhcC-CeEEEECCCCC-CCcccHHHHhhcCcEE
Confidence            999988876   6677778777776 8999999999767889999999998 99999998764 2223333333 38888


Q ss_pred             EEeeccc
Q 043260          321 KGTIFGG  327 (332)
Q Consensus       321 ~g~~~~~  327 (332)
                      .++....
T Consensus       295 ~~~~~~~  301 (350)
T cd08240         295 QGSYVGS  301 (350)
T ss_pred             EEcccCC
Confidence            8876543

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=7.4e-38  Score=296.87  Aligned_cols=305  Identities=29%  Similarity=0.487  Sum_probs=252.5

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCC---CC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKE---LK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~---~~   90 (332)
                      |||+++..++.++.+++++.|.++++||+||+.++++|++|+. +.+.++. .+|.++|||++|+|+++|+++++   ++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~   79 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS   79 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence            6899999887779999999999999999999999999999999 7776543 67889999999999999999988   99


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccc-c-ccccCCCCCcccc-cccceecccccCCceeeEEecCCceEEcCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFT-F-HGLMPDGSSRMSI-RGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~-~g~~~~g~~~~~~-~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      +||+|+..+..+|+.|.+|..+.+++|+...++ + .|-..+|...+-. .+.+. .....|+|++|+.++.+.++++|+
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~P~  158 (367)
T cd08263          80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPV-YMYSMGGLAEYAVVPATALAPLPE  158 (367)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCcc-ccccCCcceeEEEechhhEEECCC
Confidence            999999989999999999999999999986521 1 0000111000000 00000 001236799999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeC
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN  247 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~  247 (332)
                      ++++.+++.++.++.|||+++.+...+.++++|||+|+|++|++++++|+..|+..|++++.++++.+.++++|++.+++
T Consensus       159 ~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~  238 (367)
T cd08263         159 SLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVN  238 (367)
T ss_pred             CCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEec
Confidence            99999999999999999999877778899999999988999999999999999844999999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEEeec
Q 043260          248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      .+.   .++.+.+.+++++.++|+|||++++.+.+..++++++++ |+++.+|.... ....++...++. ++++.++..
T Consensus       239 ~~~---~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (367)
T cd08263         239 AAK---EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYG  314 (367)
T ss_pred             CCc---ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcC-CEEEEEccCCCCCccccCHHHHhhCCeEEEecCC
Confidence            876   778888888877778999999999855788999999998 99999997654 355677777644 888888643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=7.3e-38  Score=293.82  Aligned_cols=282  Identities=26%  Similarity=0.386  Sum_probs=239.5

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCC---CCCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGF---PLPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~---~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      ||++++.++++.+++.++|.|+|+++||+||++++++|++|+. +.+..   ....+|.++|||++|+|+++|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~   80 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK   80 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence            6899999888789999999999999999999999999999998 55431   1234678899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+..+..+|+.|++|+.+++++|+...+.  +...+|                  +|++|+.++.+.++++|++++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g------------------~~~~~~~v~~~~~~~iP~~l~  140 (341)
T PRK05396         81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGV--GVNRPG------------------AFAEYLVIPAFNVWKIPDDIP  140 (341)
T ss_pred             CCCEEEECCCCCCCCChhhhCcChhhCCCccee--eecCCC------------------cceeeEEechHHeEECcCCCC
Confidence            999999999999999999999999999876433  333333                  599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      +++++.+ .++.++++++..  ...+|++|+|.|+|++|++++|+++.+|+++|+++++++++.++++++|+++++++++
T Consensus       141 ~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~  217 (341)
T PRK05396        141 DDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAK  217 (341)
T ss_pred             HHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc
Confidence            9888855 466677665532  3468999999988999999999999999866888888999999999999999998876


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEee
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~  324 (332)
                         .++.+.+.+++++.++|+|||+.|....++.++++++++ |+++.+|.... ..+++...+.. ++++.++.
T Consensus       218 ---~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~l~~~~  287 (341)
T PRK05396        218 ---EDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPPG-DMAIDWNKVIFKGLTIKGIY  287 (341)
T ss_pred             ---ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC-CCcccHHHHhhcceEEEEEE
Confidence               678888888887779999999999877889999999998 99999997653 33444455555 78888875

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.1e-37  Score=292.40  Aligned_cols=287  Identities=25%  Similarity=0.448  Sum_probs=243.2

Q ss_pred             eeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCE
Q 043260           16 AAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDI   94 (332)
Q Consensus        16 ~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdr   94 (332)
                      |+++.+..+..+++++++.|++.++||+||+.++++|++|+. +.+.+...++|.++|||++|+|+++|++++.|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~   80 (337)
T cd05283           1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR   80 (337)
T ss_pred             CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence            578899998889999999999999999999999999999999 8776655667899999999999999999999999999


Q ss_pred             EE-eecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhh
Q 043260           95 VI-PTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSL  173 (332)
Q Consensus        95 V~-~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~  173 (332)
                      |+ .....+|++|.+|+++.+++|+.....+.|....+             ....|+|+||+.++.+.++++|+++++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~~v~~~~~~~lp~~~~~~~  147 (337)
T cd05283          81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDG-------------TITQGGYADHIVVDERFVFKIPEGLDSAA  147 (337)
T ss_pred             EEEecCCCCCCCCccccCCchhcCcchhhcccccccCC-------------CcCCCcceeEEEechhheEECCCCCCHHH
Confidence            97 44557999999999999999988765432221111             12246799999999999999999999999


Q ss_pred             hhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          174 AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       174 aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      ++.+.+...+||+++. ...+++|++++|.|+|.+|++++++++.+|+ +|+++++++++++.++++|++.+++...   
T Consensus       148 aa~l~~~~~ta~~~~~-~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~---  222 (337)
T cd05283         148 AAPLLCAGITVYSPLK-RNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKD---  222 (337)
T ss_pred             hhhhhhHHHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCcc---
Confidence            9999999999999874 4568999999998889999999999999999 8999999999999999999999988765   


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeeccc
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      .+..+   ..  +.++|++||+++....+.+++++++++ |+++.+|.... ..++++..++. ++++.++..+.
T Consensus       223 ~~~~~---~~--~~~~d~v~~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~  290 (337)
T cd05283         223 PEAMK---KA--AGSLDLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEE-PLPVPPFPLIFGRKSVAGSLIGG  290 (337)
T ss_pred             hhhhh---hc--cCCceEEEECCCCcchHHHHHHHhcCC-CEEEEEeccCC-CCccCHHHHhcCceEEEEecccC
Confidence            33322   11  347999999999865689999999998 99999998763 33677776555 99999987654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=2e-37  Score=290.80  Aligned_cols=285  Identities=31%  Similarity=0.408  Sum_probs=239.7

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCC-CCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPK-ATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||+++.++. .+++++++.|+|. ++||+||+.++++|++|+. +.+.++ ..+|.++|||++|+|+++|++++.+++|
T Consensus         1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (344)
T cd08284           1 MKAVVFKGPG-DVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG   78 (344)
T ss_pred             CeeEEEecCC-CceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence            6899998875 4999999999985 9999999999999999998 777654 3457899999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCC--ceEEcCCCCC
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN--YVVKVDPSID  170 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~--~v~~lP~~~~  170 (332)
                      |+|+..+..+|+.|.+|+.+.+++|++....  |..  +.            ....|+|++|+.++.+  .++++|++++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~------------~~~~g~~~~~~~v~~~~~~~~~~p~~l~  142 (344)
T cd08284          79 DRVVSPFTIACGECFYCRRGQSGRCAKGGLF--GYA--GS------------PNLDGAQAEYVRVPFADGTLLKLPDGLS  142 (344)
T ss_pred             CEEEEcccCCCCCChHHhCcCcccCCCCccc--ccc--cc------------CCCCCceeEEEEcccccCceEECCCCCC
Confidence            9999988899999999999999999876432  210  00            0012569999999864  9999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      +++++.+++++.|||+++. ..++.+|++|||+|+|.+|++++++++.+|+.+|+++++++++.+.++++|++ .++.+.
T Consensus       143 ~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~  220 (344)
T cd08284         143 DEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINFED  220 (344)
T ss_pred             HHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEecCC
Confidence            9999999999999999884 57889999999998899999999999999975799998888999999999986 455554


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEe
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGT  323 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~  323 (332)
                         .++.+.+.+++++.++|++||++++...+..++++++++ |+++.+|........++....+. ++++.+.
T Consensus       221 ---~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  290 (344)
T cd08284         221 ---AEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPG-GVISSVGVHTAEEFPFPGLDAYNKNLTLRFG  290 (344)
T ss_pred             ---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEECcCCCCCccccHHHHhhcCcEEEEe
Confidence               567778888888779999999999877889999999998 99999998764333444444444 7777654

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=2.8e-37  Score=290.10  Aligned_cols=282  Identities=30%  Similarity=0.436  Sum_probs=240.0

Q ss_pred             eeeEEEecCCCCeEEEEEecCCC-CCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPP-KATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      ||++++++++. +++++.|.|+| +++||+||+.++++|++|+. +.|.++ ...|.++|||++|+|+++|+++..+++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (345)
T cd08287           1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSP-TRAPAPIGHEFVGVVEEVGSEVTSVKPG   78 (345)
T ss_pred             CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCC-CCCCcccccceEEEEEEeCCCCCccCCC
Confidence            78999998876 99999999996 89999999999999999998 777654 2457899999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCC--ceEEcCCCCC
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN--YVVKVDPSID  170 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~--~v~~lP~~~~  170 (332)
                      |+|+..+..+|+.|.+|+.|+.++|.+..+.  |...+|                  +|+||+.++.+  .++++|++++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g------------------~~~~~~~v~~~~~~~~~lP~~l~  138 (345)
T cd08287          79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGFW--GAFVDG------------------GQGEYVRVPLADGTLVKVPGSPS  138 (345)
T ss_pred             CEEEeccccCCCCChhhhCcCcccCCCCCcc--cCCCCC------------------ceEEEEEcchhhCceEECCCCCC
Confidence            9998867788999999999999999986654  444444                  49999999875  9999999998


Q ss_pred             hhhhh-----hcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee
Q 043260          171 LSLAG-----FLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF  245 (332)
Q Consensus       171 ~~~aa-----~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v  245 (332)
                      ++.+.     ++...+.+|++++ ..+++++|++|+|.|+|++|++++++|+..|+..++++++++++.++++++|++.+
T Consensus       139 ~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v  217 (345)
T cd08287         139 DDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDI  217 (345)
T ss_pred             hhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceE
Confidence            82221     2225678899987 56789999999999889999999999999999568889888889999999999999


Q ss_pred             eCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHh-HhcCcEEEEee
Q 043260          246 INPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPA-IALGRNLKGTI  324 (332)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~-~~~~~~i~g~~  324 (332)
                      +++..   .++.+.+.+++++.++|+++|++|++..+..++++++++ |+++.+|... ....+++.. +..++++.++.
T Consensus       218 ~~~~~---~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~  292 (345)
T cd08287         218 VAERG---EEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVPH-GGVELDVRELFFRNVGLAGGP  292 (345)
T ss_pred             ecCCc---ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccC-CEEEEecccC-CCCccCHHHHHhcceEEEEec
Confidence            99987   778888888888789999999999877899999999998 9999999776 345566633 44488888754

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3.4e-37  Score=288.73  Aligned_cols=279  Identities=30%  Similarity=0.498  Sum_probs=242.6

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||++++.++. +++.+++.|++.++||+|||.++++|+.|+. ..+..+...+|.++|+|++|+|+++|++++.+++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (337)
T cd08261           1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD   79 (337)
T ss_pred             CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence            68999998765 9999999999999999999999999999998 777665556688999999999999999999999999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhh
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSL  173 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~  173 (332)
                      +|+..++.+|+.|..|+.+.++.|++....  ++...                  |+|++|+.++.+ ++++|+++++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------g~~~~~v~v~~~-~~~~p~~~~~~~  138 (337)
T cd08261          80 RVVVDPYISCGECYACRKGRPNCCENLQVL--GVHRD------------------GGFAEYIVVPAD-ALLVPEGLSLDQ  138 (337)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCCCee--eecCC------------------CcceeEEEechh-eEECCCCCCHHH
Confidence            999989999999999999999999755332  32222                  459999999999 999999999999


Q ss_pred             hhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          174 AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       174 aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      ++++ ..+.++++++ +..++++|++|||+|+|.+|++++|+|+.+|+ +|+++.+++++.+.++++|+++++++..   
T Consensus       139 aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~---  212 (337)
T cd08261         139 AALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD---  212 (337)
T ss_pred             hhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCcc---
Confidence            9887 4778888877 77899999999999889999999999999999 8999989999999999999999998887   


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEe
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGT  323 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~  323 (332)
                      .++.+.+.+++++.++|++||++++...+..++++++++ |+++.+|... ....++...+.. ++++.++
T Consensus       213 ~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~i~~g~~~-~~~~~~~~~~~~~~~~~~~~  281 (337)
T cd08261         213 EDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSK-GPVTFPDPEFHKKELTILGS  281 (337)
T ss_pred             cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEcCCC-CCCccCHHHHHhCCCEEEEe
Confidence            678888888887778999999998877889999999998 9999999776 345556555554 7777765

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3.9e-37  Score=285.00  Aligned_cols=288  Identities=27%  Similarity=0.434  Sum_probs=245.1

Q ss_pred             eeeEEEecCC-CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEG-EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      ||++++++.+ ..+++++++.|++.++||+||+.++++|++|.. ..+.+.....|.++|+|++|+|+++|++++.+++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   80 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG   80 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence            5789988755 359999999999999999999999999999998 77765334567899999999999999999999999


Q ss_pred             CEEEeecc-cCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           93 DIVIPTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        93 drV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      |+|+..+. .+|+.|++|.++..+.|+.....  |...+                  |+|++|+.++.+.++++|+++++
T Consensus        81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------g~~~~~~~v~~~~~~~lp~~~~~  140 (306)
T cd08258          81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKGI--GTQAD------------------GGFAEYVLVPEESLHELPENLSL  140 (306)
T ss_pred             CEEEEccCcCCCCCCcchhCcCcccCCCCcee--eecCC------------------CceEEEEEcchHHeEECcCCCCH
Confidence            99987664 78999999999999999875322  32222                  45999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEc--CCcchHHHHHHcCCCeeeCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGID--KNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~--~~~~~~~~~~~lga~~v~~~~  249 (332)
                      ++++ +..++.++|+++....+++++++|||.|+|.+|++++++++.+|. +|+.+.  .++++.+.++++|++++ ++.
T Consensus       141 ~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~~~  217 (306)
T cd08258         141 EAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-NGG  217 (306)
T ss_pred             HHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-CCC
Confidence            9887 556888999998888899999999998889999999999999999 787763  34557788899999888 776


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecccc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGGI  328 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~~  328 (332)
                      .   .++.+.+.+++.+.++|++||++|....+...+++++++ |+++.+|........++...+++ +++|.|++++..
T Consensus       218 ~---~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  293 (306)
T cd08258         218 E---EDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVGIFGPLAASIDVERIIQKELSVIGSRSSTP  293 (306)
T ss_pred             c---CCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccCCCCcccCHHHHhhcCcEEEEEecCch
Confidence            6   778888888887778999999998767889999999998 99999998764346777777776 999999998764


Q ss_pred             c
Q 043260          329 K  329 (332)
Q Consensus       329 ~  329 (332)
                      .
T Consensus       294 ~  294 (306)
T cd08258         294 A  294 (306)
T ss_pred             H
Confidence            3

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=2.1e-37  Score=296.96  Aligned_cols=295  Identities=17%  Similarity=0.227  Sum_probs=243.1

Q ss_pred             ccceeeeEEEec--CCC---CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCC----------CCCCCC-ccccc
Q 043260           11 KIYYAAAVVCWG--EGE---PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGF----------PLPLFP-RVLGH   73 (332)
Q Consensus        11 ~~~~~~a~~~~~--~~~---~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~----------~~~~~p-~v~G~   73 (332)
                      ++.+|||+++..  .++   .+++.+++.|.|+++||+||+.++++|++|.. ..+..          +....| .++||
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            467899999954  443   48999999999999999999999999999876 54421          111223 37999


Q ss_pred             ceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCcee
Q 043260           74 EGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTE  153 (332)
Q Consensus        74 e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~  153 (332)
                      |++|+|+++|++++.+++||+|+..+..+|++|.+|++|.+++|......  |+..                 ..|+|+|
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~-----------------~~g~~ae  144 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIW--GYET-----------------NFGSFAE  144 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccc--cccC-----------------CCccceE
Confidence            99999999999999999999999999999999999999999999765322  3211                 1246999


Q ss_pred             eEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHH--hhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          154 YMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK--EFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       154 ~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~--~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      |+.++.+.++++|+++++++++.+.+++.|||+++..  ..++.+|++|+|+|+ |++|++++++++.+|+ ++++++++
T Consensus       145 ~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~~~  223 (398)
T TIGR01751       145 FALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVVSS  223 (398)
T ss_pred             EEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEcCC
Confidence            9999999999999999999999999999999998754  467899999999998 9999999999999999 78888888


Q ss_pred             cchHHHHHHcCCCeeeCCCCCC-------------------CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhcc
Q 043260          231 PCRKDKGEAFGMTDFINPDDEP-------------------NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKL  291 (332)
Q Consensus       231 ~~~~~~~~~lga~~v~~~~~~~-------------------~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~  291 (332)
                      +++++.++++|++.++|..+..                   ...+.+.+.+++++.++|++|||+|. ..+..+++++++
T Consensus       224 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~-~~~~~~~~~l~~  302 (398)
T TIGR01751       224 PEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGR-ATFPTSVFVCRR  302 (398)
T ss_pred             HHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcH-HHHHHHHHhhcc
Confidence            9999999999999999875410                   01355667788887789999999997 578999999999


Q ss_pred             CCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeeccc
Q 043260          292 GKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       292 ~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      + |+++.+|........++...+.. +.++.++.++.
T Consensus       303 ~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (398)
T TIGR01751       303 G-GMVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFAN  338 (398)
T ss_pred             C-CEEEEEccccCCCCCcCHHHHhhcccEEEccccCc
Confidence            8 99999998765335566665555 77888876543

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=3.6e-37  Score=288.43  Aligned_cols=283  Identities=29%  Similarity=0.481  Sum_probs=239.1

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      ||+++++++++...++++|.|.+.++||+|||.++++|++|+. +.+..+. ..|.++|||++|+|+++|++++.|++||
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD   79 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence            7899999887744489999999999999999999999999998 7776543 3477899999999999999999999999


Q ss_pred             EEEeec-ccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           94 IVIPTF-IGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        94 rV~~~~-~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      +|+..| ..+|+.|..|..+.++.|.+....  |+..+|                  +|+||+.++.+.++++|++++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g------------------~~~~~~~v~~~~~~~~p~~~~~~  139 (338)
T PRK09422         80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKNA--GYTVDG------------------GMAEQCIVTADYAVKVPEGLDPA  139 (338)
T ss_pred             EEEEccCCCCCCCChhhcCCCcccCCCcccc--CccccC------------------cceeEEEEchHHeEeCCCCCCHH
Confidence            998654 578999999999999999887543  554445                  49999999999999999999999


Q ss_pred             hhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHH-cCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARI-QGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~-~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      +++.++.++.|||+++ +.+++++|++|||+|+|++|++++++++. .|. +|+++++++++++.++++|++.+++++. 
T Consensus       140 ~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~-  216 (338)
T PRK09422        140 QASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSKR-  216 (338)
T ss_pred             HeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEecccc-
Confidence            9999999999999988 77889999999999999999999999998 498 8999999999999999999999988742 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                       ..++.+.+++.++  ++|+++.+.++...+..++++++++ |+++.+|... ....++...+.. +..+.|+.+.
T Consensus       217 -~~~~~~~v~~~~~--~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~  287 (338)
T PRK09422        217 -VEDVAKIIQEKTG--GAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGLPP-ESMDLSIPRLVLDGIEVVGSLVG  287 (338)
T ss_pred             -cccHHHHHHHhcC--CCcEEEEeCCCHHHHHHHHHhccCC-CEEEEEeeCC-CCceecHHHHhhcCcEEEEecCC
Confidence             1445667777765  6896655556667899999999998 9999999765 334556555555 7788876643

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.8e-37  Score=294.77  Aligned_cols=288  Identities=27%  Similarity=0.443  Sum_probs=238.5

Q ss_pred             ceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCC------C-CCCCCcccccceeEEEEEeCC
Q 043260           13 YYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGF------P-LPLFPRVLGHEGVGMVESIGD   84 (332)
Q Consensus        13 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~------~-~~~~p~v~G~e~~G~Vv~vG~   84 (332)
                      .++.+.++...  .++++++|.|+++++||+||++++++|++|+. +.+..      + ...+|.++|||++|+|+++|+
T Consensus        27 ~~~~~~~~~~~--~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~  104 (384)
T cd08265          27 TNLGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGK  104 (384)
T ss_pred             ccceeEEEeCC--CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECC
Confidence            44566666643  49999999999999999999999999999998 65321      1 135688999999999999999


Q ss_pred             CCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEE
Q 043260           85 EVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVK  164 (332)
Q Consensus        85 ~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~  164 (332)
                      +++.|++||+|+..+..+|+.|.+|+.|.+++|++....  |+..+|                  +|++|+.++.+.+++
T Consensus       105 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~--g~~~~g------------------~~~~~v~v~~~~~~~  164 (384)
T cd08265         105 NVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKEL--GFSADG------------------AFAEYIAVNARYAWE  164 (384)
T ss_pred             CCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCccee--eecCCC------------------cceeeEEechHHeEE
Confidence            999999999999999999999999999999999976543  554444                  499999999999999


Q ss_pred             cCCC-------CChhhhhhcccchhhhHHHHHHh-hCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHH
Q 043260          165 VDPS-------IDLSLAGFLSCGYSSGFGAAWKE-FKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDK  236 (332)
Q Consensus       165 lP~~-------~~~~~aa~l~~~~~ta~~al~~~-~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~  236 (332)
                      +|++       ++++ ++++..++.+||+++... .++++|++|||+|+|++|++++++|+.+|+.+|++++++++|.++
T Consensus       165 lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~  243 (384)
T cd08265         165 INELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNL  243 (384)
T ss_pred             CCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence            9986       3455 555666889999998655 689999999999889999999999999998679999999999999


Q ss_pred             HHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHh
Q 043260          237 GEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIA  315 (332)
Q Consensus       237 ~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~  315 (332)
                      ++++|+++++++++....++.+.+.++++++++|+|+|++|+. ..+.+++++++++ |+++.+|.... ..++++..+.
T Consensus       244 ~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~  321 (384)
T cd08265         244 AKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN-GKIVYIGRAAT-TVPLHLEVLQ  321 (384)
T ss_pred             HHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcC-CEEEEECCCCC-CCcccHHHHh
Confidence            9999999999876411236778888888888999999999973 4778999999998 99999997653 3455555555


Q ss_pred             c-CcEEEEeec
Q 043260          316 L-GRNLKGTIF  325 (332)
Q Consensus       316 ~-~~~i~g~~~  325 (332)
                      . ..++.++..
T Consensus       322 ~~~~~l~~~~~  332 (384)
T cd08265         322 VRRAQIVGAQG  332 (384)
T ss_pred             hCceEEEEeec
Confidence            5 667877653

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=4.8e-37  Score=287.02  Aligned_cols=284  Identities=28%  Similarity=0.445  Sum_probs=247.4

Q ss_pred             eeeEEEecCCCC-eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC-CCCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           15 AAAVVCWGEGEP-WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP-LPLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        15 ~~a~~~~~~~~~-l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~-~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      ||+++++.++++ +.+.+.+.|.+.+++|+||+.++++|+.|.. +.+.++ ...+|.++|+|++|+|+++|++++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~   80 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV   80 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence            799999999887 6888888888999999999999999999998 777654 3456789999999999999999999999


Q ss_pred             CCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           92 GDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        92 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      ||+|+..|..+|+.|.+|+.++.+.|....+.  |+..+|                  +|++|+.++.+.++++|+++++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g------------------~~~~~~~~~~~~~~~lp~~~~~  140 (338)
T cd08254          81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGMP--GLGIDG------------------GFAEYIVVPARALVPVPDGVPF  140 (338)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCcc--ccccCC------------------cceeeEEechHHeEECCCCCCH
Confidence            99999999999999999999999999776544  554444                  5999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      ++++.++.++.|||+++.+...++++++|||.|+|.+|++++++|+..|+ +|++++.++++.+.++++|.+.+++..+ 
T Consensus       141 ~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~-  218 (338)
T cd08254         141 AQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLD-  218 (338)
T ss_pred             HHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCC-
Confidence            99999999999999998777889999999998889999999999999998 7999999999999999999999888776 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                        ....+.+ +.+.+.++|+++|+++....+..++++|+++ |+++.+|... ....++...++. +.++.+++.
T Consensus       219 --~~~~~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~  288 (338)
T cd08254         219 --DSPKDKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGR-DKLTVDLSDLIARELRIIGSFG  288 (338)
T ss_pred             --cCHHHHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcC-CEEEEECCCC-CCCccCHHHHhhCccEEEEecc
Confidence              5555556 5566668999999999877889999999998 9999999765 334566666655 778887653

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=9.5e-38  Score=272.89  Aligned_cols=275  Identities=24%  Similarity=0.316  Sum_probs=231.2

Q ss_pred             eeecccccceeeeEEEecCCCC---eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEE
Q 043260            5 FHISFLKIYYAAAVVCWGEGEP---WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMV   79 (332)
Q Consensus         5 ~~~~~~~~~~~~a~~~~~~~~~---l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~V   79 (332)
                      +|.+.-++...|+++|.+.++|   +++++.++|+....+|+||.+|+.|||+|++ ++|.||. +++|.+-|.|++|+|
T Consensus        10 ~ssa~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eV   89 (354)
T KOG0025|consen   10 SSSASQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEV   89 (354)
T ss_pred             cccccccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEE
Confidence            4444556677899999998887   7788899998888889999999999999999 9999987 678999999999999


Q ss_pred             EEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecC
Q 043260           80 ESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDA  159 (332)
Q Consensus        80 v~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~  159 (332)
                      +++|+++++|++||+|....                                              .+.|+|++|.+.++
T Consensus        90 v~vGs~vkgfk~Gd~VIp~~----------------------------------------------a~lGtW~t~~v~~e  123 (354)
T KOG0025|consen   90 VAVGSNVKGFKPGDWVIPLS----------------------------------------------ANLGTWRTEAVFSE  123 (354)
T ss_pred             EEecCCcCccCCCCeEeecC----------------------------------------------CCCccceeeEeecc
Confidence            99999999999999998432                                              12368999999999


Q ss_pred             CceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH----
Q 043260          160 NYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK----  234 (332)
Q Consensus       160 ~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~----  234 (332)
                      +.++++++.++.+.||++..+.+|||++|.+.-++.+||+|+-.|+ +++|++.+|+|+++|++.|-++ |+....    
T Consensus       124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvV-RdR~~ieel~  202 (354)
T KOG0025|consen  124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVV-RDRPNIEELK  202 (354)
T ss_pred             cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEe-ecCccHHHHH
Confidence            9999999999999999999999999999999999999999888898 9999999999999999555555 444333    


Q ss_pred             HHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhH
Q 043260          235 DKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI  314 (332)
Q Consensus       235 ~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~  314 (332)
                      +.++.+||++|+...+   -.-.+.....-....+.+.|||+|+. ...+..+.|.++ |+++.+|....++..++...+
T Consensus       203 ~~Lk~lGA~~ViTeee---l~~~~~~k~~~~~~~prLalNcVGGk-sa~~iar~L~~G-gtmvTYGGMSkqPv~~~ts~l  277 (354)
T KOG0025|consen  203 KQLKSLGATEVITEEE---LRDRKMKKFKGDNPRPRLALNCVGGK-SATEIARYLERG-GTMVTYGGMSKQPVTVPTSLL  277 (354)
T ss_pred             HHHHHcCCceEecHHH---hcchhhhhhhccCCCceEEEeccCch-hHHHHHHHHhcC-ceEEEecCccCCCcccccchh
Confidence            3567799999986543   11111111112344689999999996 557889999998 999999998888889988888


Q ss_pred             hc-CcEEEEeeccccccC
Q 043260          315 AL-GRNLKGTIFGGIKTK  331 (332)
Q Consensus       315 ~~-~~~i~g~~~~~~~~~  331 (332)
                      ++ +++++|+++..|..+
T Consensus       278 IFKdl~~rGfWvt~W~~~  295 (354)
T KOG0025|consen  278 IFKDLKLRGFWVTRWKKE  295 (354)
T ss_pred             eeccceeeeeeeeehhhc
Confidence            88 999999999998754

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=1.1e-36  Score=285.87  Aligned_cols=284  Identities=29%  Similarity=0.417  Sum_probs=245.1

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||+++++++. +.+++.+.|++.+++|+||+.++++|+.|+. ..+.++....|.++|+|++|+|+++|++++.+++||
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd   79 (343)
T cd08235           1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD   79 (343)
T ss_pred             CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence            68999998875 9999999999999999999999999999999 777654344577899999999999999999999999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCc-----eEEcCCC
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANY-----VVKVDPS  168 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~-----v~~lP~~  168 (332)
                      +|+..++.+|+.|++|.+|.++.|+...+.  |...+                  |+|++|+.++.+.     ++++|++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------g~~~~~v~v~~~~~~~~~~~~lP~~  139 (343)
T cd08235          80 RVFVAPHVPCGECHYCLRGNENMCPNYKKF--GNLYD------------------GGFAEYVRVPAWAVKRGGVLKLPDN  139 (343)
T ss_pred             EEEEccCCCCCCChHHHCcCcccCCCccee--ccCCC------------------CcceeeEEecccccccccEEECCCC
Confidence            999999999999999999999999887544  43333                  3599999999988     9999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      +++.+++.+ .++.+||+++. ..++++|++|+|+|+|.+|++++++|+..|.+.|+++++++++.+.++++|.++++++
T Consensus       140 ~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~  217 (343)
T cd08235         140 VSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDA  217 (343)
T ss_pred             CCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecC
Confidence            999999876 68889999884 4589999999999889999999999999999339999999999998889999999988


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEEeec
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      ++   .++.+.+.++++++++|+|||++++...+..++++++++ |+++.+|.... ....++...+.. ++.+.++..
T Consensus       218 ~~---~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  292 (343)
T cd08235         218 AE---EDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVNIDPNLIHYREITITGSYA  292 (343)
T ss_pred             Cc---cCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEeccCCCCCcccCHHHHhhCceEEEEEec
Confidence            87   778888888888878999999999867889999999998 99999997654 345666555555 777777654

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=8.9e-37  Score=289.17  Aligned_cols=289  Identities=27%  Similarity=0.405  Sum_probs=233.7

Q ss_pred             cceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC---CCCCCcccccceeEEEEEeCCCCC
Q 043260           12 IYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP---LPLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      -.+++++++.++.. +++++.+.|.+.++||+||++++++|++|+. +.+...   ...+|.++|||++|+|+++|++++
T Consensus        15 ~~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   93 (364)
T PLN02702         15 EEENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVK   93 (364)
T ss_pred             ccccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCC
Confidence            35666677776654 9999999999999999999999999999998 655221   123578899999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      .|++||+|+..+..+|+.|.+|++|.++.|.+..+.  +...                 ..|+|+||+.++.+.++++|+
T Consensus        94 ~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~--~~~~-----------------~~g~~~~y~~v~~~~~~~~P~  154 (364)
T PLN02702         94 HLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFF--ATPP-----------------VHGSLANQVVHPADLCFKLPE  154 (364)
T ss_pred             CCCCCCEEEEcCCCCCCCCcchhCcCcccCCCcccc--CCCC-----------------CCCcccceEEcchHHeEECCC
Confidence            999999999999999999999999999999874322  2110                 124699999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeC
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN  247 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~  247 (332)
                      +++++++++. .++.++++++ ...++.+|++|+|+|+|++|++++++++.+|+..|++++++++|.++++++|++.+++
T Consensus       155 ~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~  232 (364)
T PLN02702        155 NVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVL  232 (364)
T ss_pred             CCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEe
Confidence            9999998863 2555688877 7788999999999988999999999999999966888998999999999999998876


Q ss_pred             CCCCCCchHHHHHHHh--cCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEee
Q 043260          248 PDDEPNKSISELVKEM--THGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~--~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~  324 (332)
                      +.. ...++.+.+.++  ..+.++|+|||++|+...+..++++++++ |+++.+|.... ...+....+.. ++++.+++
T Consensus       233 ~~~-~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~  309 (364)
T PLN02702        233 VST-NIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHN-EMTVPLTPAAAREVDVVGVF  309 (364)
T ss_pred             cCc-ccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC-CCcccHHHHHhCccEEEEec
Confidence            532 114455555544  23447999999999767899999999998 99999997643 24445555555 88898876


Q ss_pred             c
Q 043260          325 F  325 (332)
Q Consensus       325 ~  325 (332)
                      .
T Consensus       310 ~  310 (364)
T PLN02702        310 R  310 (364)
T ss_pred             c
Confidence            4

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.1e-37  Score=285.89  Aligned_cols=276  Identities=28%  Similarity=0.407  Sum_probs=233.6

Q ss_pred             eeeEEEecCC-CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEG-EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      ||++++.+++ +.+++++.+.|+++++||+||+.++++|++|+. +.+ .....+|.++|||++|+|+++|++++.+++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~-~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (325)
T cd08264           1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINA-VKVKPMPHIPGAEFAGVVEEVGDHVKGVKKG   79 (325)
T ss_pred             CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhC-CCCCCCCeecccceeEEEEEECCCCCCCCCC
Confidence            6899997665 458888888888999999999999999999998 654 2223457899999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      |+|+..+..+|+.|.+|+.|.+++|++..+.  |+...|                  +|++|+.++.+.++++|++++++
T Consensus        80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~--~~~~~g------------------~~~~~~~v~~~~~~~~p~~~~~~  139 (325)
T cd08264          80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGII--GVVSNG------------------GYAEYIVVPEKNLFKIPDSISDE  139 (325)
T ss_pred             CEEEECCCcCCCCChhhcCCCccccCcccee--eccCCC------------------ceeeEEEcCHHHceeCCCCCCHH
Confidence            9999999999999999999999999987543  443333                  59999999999999999999999


Q ss_pred             hhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      +++.+++++.+||+++. ..++++|++|+|+|+ |++|++++++|+.+|. +|++++    +.+.++++|++++++.++ 
T Consensus       140 ~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~----~~~~~~~~g~~~~~~~~~-  212 (325)
T cd08264         140 LAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVS----RKDWLKEFGADEVVDYDE-  212 (325)
T ss_pred             HhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEe----HHHHHHHhCCCeeecchH-
Confidence            99999999999999885 488999999999998 9999999999999998 788875    347778899999887643 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                          ..+.+.+++  .++|+|+|++|+ ..+..++++++++ |+++.+|........++...++. +.++.++..+
T Consensus       213 ----~~~~l~~~~--~~~d~vl~~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (325)
T cd08264         213 ----VEEKVKEIT--KMADVVINSLGS-SFWDLSLSVLGRG-GRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGG  280 (325)
T ss_pred             ----HHHHHHHHh--CCCCEEEECCCH-HHHHHHHHhhccC-CEEEEEecCCCCCCccCHHHHhhcCcEEEEccCC
Confidence                345566666  489999999998 5889999999998 99999997533346777777665 7788887544

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=2e-36  Score=283.89  Aligned_cols=285  Identities=28%  Similarity=0.474  Sum_probs=248.2

Q ss_pred             eeeEEEecCC-CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           15 AAAVVCWGEG-EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        15 ~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      |||+++.+++ ..+++++++.|.+.++|++||+.++++|++|.. +.+.++. ...|.++|||++|+|+++|++++.+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~   80 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV   80 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence            7899998776 349999999999999999999999999999998 7765532 345778999999999999999999999


Q ss_pred             CCEEEeec-ccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           92 GDIVIPTF-IGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        92 GdrV~~~~-~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      ||+|+..| ..+|+.|.+|+.+.+++|++..+.  |+...|                  +|++|+.++.+.++++|++++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g------------------~~~s~~~~~~~~~~~lp~~~~  140 (341)
T cd08297          81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKNS--GYTVDG------------------TFAEYAIADARYVTPIPDGLS  140 (341)
T ss_pred             CCEEEEecCCCCCCCCccccCCCcccCCCcccc--ccccCC------------------cceeEEEeccccEEECCCCCC
Confidence            99998765 588999999999999999887544  554444                  499999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +++++.++..+.|||+++.. .++++++++||+|+ +.+|++++++++..|+ +|+++++++++.+.++++|++.+++++
T Consensus       141 ~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~  218 (341)
T cd08297         141 FEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVDFK  218 (341)
T ss_pred             HHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEcCC
Confidence            99999999999999998855 58999999999998 7799999999999999 999999999999999999999999887


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      .   .++.+.+.++++++++|++||+.++...+..++++++++ |+++.+|.......+++...++. ++++.++..
T Consensus       219 ~---~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (341)
T cd08297         219 K---SDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLV  291 (341)
T ss_pred             C---ccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcC-CEEEEecCCCCCCCCCCHHHHHhcccEEEEecc
Confidence            6   678888888887779999999888777889999999998 99999997764344666666555 888888654

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=6.3e-37  Score=286.34  Aligned_cols=278  Identities=30%  Similarity=0.463  Sum_probs=238.0

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||++++++++++++++.|.|++.++|++||++++++|++|+. ..+..+...+|.++|||++|+|+++|++++.+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~   80 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD   80 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence            7899999998889999999999999999999999999999998 777665556788999999999999999998899999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhh
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSL  173 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~  173 (332)
                      +|++.+..+|+.|.+|..|.++.|....+.  |...+|                  +|++|+.++.+.++++|+++++.+
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g------------------~~~~~~~~~~~~~~~lp~~~~~~~  140 (334)
T PRK13771         81 RVASLLYAPDGTCEYCRSGEEAYCKNRLGY--GEELDG------------------FFAEYAKVKVTSLVKVPPNVSDEG  140 (334)
T ss_pred             EEEECCCCCCcCChhhcCCCcccCcccccc--ccccCc------------------eeeeeeecchhceEECCCCCCHHH
Confidence            999988899999999999999999887543  433333                  599999999999999999999999


Q ss_pred             hhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCC
Q 043260          174 AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP  252 (332)
Q Consensus       174 aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  252 (332)
                      ++.+++++.+||+++.+. .++++++|+|+|+ |.+|++++++++..|+ +|+++++++++++.++++ ++++++.+   
T Consensus       141 ~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~---  214 (334)
T PRK13771        141 AVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVGS---  214 (334)
T ss_pred             hhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCch---
Confidence            999999999999988555 8999999999998 9999999999999999 899999999999988888 77776553   


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEEeec
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                        ++.+.++++  + ++|++||++|+. .+.+++++++++ |+++.+|.... ...+++...++. ++++.+++.
T Consensus       215 --~~~~~v~~~--~-~~d~~ld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (334)
T PRK13771        215 --KFSEEVKKI--G-GADIVIETVGTP-TLEESLRSLNMG-GKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHIS  282 (334)
T ss_pred             --hHHHHHHhc--C-CCcEEEEcCChH-HHHHHHHHHhcC-CEEEEEeccCCCCCcccCHHHHHhcccEEEEecC
Confidence              345556654  3 699999999984 788999999998 99999998654 222344333333 888888753

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=5.1e-37  Score=286.20  Aligned_cols=260  Identities=20%  Similarity=0.214  Sum_probs=219.4

Q ss_pred             eeeEEEecCCC-----CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCC
Q 043260           15 AAAVVCWGEGE-----PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        15 ~~a~~~~~~~~-----~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      |||+++++++.     .++++++|.|+|+++||+||+.++++|++|+. +.|.++. ..+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            78999998874     37888999999999999999999999999999 7776543 45789999999999999999999


Q ss_pred             C-CCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcC
Q 043260           88 E-LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD  166 (332)
Q Consensus        88 ~-~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP  166 (332)
                      + |++||+|+..+.                            .+                  |+|+||+.++++.++++|
T Consensus        81 ~~~~vGd~V~~~~~----------------------------~~------------------g~~a~~~~v~~~~~~~iP  114 (324)
T cd08291          81 AQSLIGKRVAFLAG----------------------------SY------------------GTYAEYAVADAQQCLPLP  114 (324)
T ss_pred             ccCCCCCEEEecCC----------------------------CC------------------CcchheeeecHHHeEECC
Confidence            6 999999984210                            01                  359999999999999999


Q ss_pred             CCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEE-CC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe
Q 043260          167 PSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVF-GL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD  244 (332)
Q Consensus       167 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~-G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~  244 (332)
                      +++++++++.+++.+.|||..+ +.... ++++++|+ |+ |++|++++|+|+.+|+ +|+++++++++++.++++|+++
T Consensus       115 ~~~~~~~aa~~~~~~~ta~~~~-~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~  191 (324)
T cd08291         115 DGVSFEQGASSFVNPLTALGML-ETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGAEY  191 (324)
T ss_pred             CCCCHHHHhhhcccHHHHHHHH-Hhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcE
Confidence            9999999998888888998544 55555 56666665 54 9999999999999999 8999999999999999999999


Q ss_pred             eeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcc-cCChHhHhc-CcEEEE
Q 043260          245 FINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKV-PLNFPAIAL-GRNLKG  322 (332)
Q Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~-~~~~~~~~~-~~~i~g  322 (332)
                      +++++.   .++.+.++++++++++|++||++|+. .....+++++++ |+++.+|....... .++...++. ++++.|
T Consensus       192 ~i~~~~---~~~~~~v~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  266 (324)
T cd08291         192 VLNSSD---PDFLEDLKELIAKLNATIFFDAVGGG-LTGQILLAMPYG-STLYVYGYLSGKLDEPIDPVDLIFKNKSIEG  266 (324)
T ss_pred             EEECCC---ccHHHHHHHHhCCCCCcEEEECCCcH-HHHHHHHhhCCC-CEEEEEEecCCCCcccCCHHHHhhcCcEEEE
Confidence            999877   78888898888888999999999985 667889999998 99999997654222 366666555 999999


Q ss_pred             eecccc
Q 043260          323 TIFGGI  328 (332)
Q Consensus       323 ~~~~~~  328 (332)
                      +....+
T Consensus       267 ~~~~~~  272 (324)
T cd08291         267 FWLTTW  272 (324)
T ss_pred             EEHHHh
Confidence            987664

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=3.9e-37  Score=285.32  Aligned_cols=252  Identities=20%  Similarity=0.295  Sum_probs=200.7

Q ss_pred             eeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecC-ccccc-ccCCCCC---CCCCcccccceeEEEEEeCCCCCC
Q 043260           14 YAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASIC-HTDVL-SSKGFPL---PLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        14 ~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~-~~D~~-~~g~~~~---~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      +|||+++++++. +++++.+.|+|+++||||||++++|| ++|+. +.|.++.   ..+|.++|||++|+|+++|+++ +
T Consensus         1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~   78 (308)
T TIGR01202         1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G   78 (308)
T ss_pred             CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence            589999998875 99999999999999999999999996 79998 7776543   3579999999999999999998 5


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      |++||||++.    |..|..|..              |  .                  .|+|+||+.++++.++++|++
T Consensus        79 ~~vGdrV~~~----~~~c~~~~~--------------~--~------------------~G~~aey~~v~~~~~~~ip~~  120 (308)
T TIGR01202        79 FRPGDRVFVP----GSNCYEDVR--------------G--L------------------FGGASKRLVTPASRVCRLDPA  120 (308)
T ss_pred             CCCCCEEEEe----Ccccccccc--------------c--c------------------CCcccceEEcCHHHceeCCCC
Confidence            9999999863    223332210              0  0                  246999999999999999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      ++++. +.++ ++.|||+++.+ . ..+++++||+|+|++|++++|+|+.+|++.|++++.+++|++.++++   .++++
T Consensus       121 ~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i~~  193 (308)
T TIGR01202       121 LGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVLDP  193 (308)
T ss_pred             CCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cccCh
Confidence            99864 5554 67899998844 3 34688999999999999999999999996677788887777766543   45554


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeeccc
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      .+   .          .+.++|+|||++|+...++.++++++++ |+++.+|... ...++++..++. ++++.|+...+
T Consensus       194 ~~---~----------~~~g~Dvvid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~i~~~~~~~  258 (308)
T TIGR01202       194 EK---D----------PRRDYRAIYDASGDPSLIDTLVRRLAKG-GEIVLAGFYT-EPVNFDFVPAFMKEARLRIAAEWQ  258 (308)
T ss_pred             hh---c----------cCCCCCEEEECCCCHHHHHHHHHhhhcC-cEEEEEeecC-CCcccccchhhhcceEEEEecccc
Confidence            32   1          2347999999999977889999999998 9999999876 345666555555 88999876543

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=3.2e-36  Score=286.58  Aligned_cols=287  Identities=26%  Similarity=0.374  Sum_probs=236.5

Q ss_pred             eeeEEEecCCCCeEEEEEecCCC-CCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPP-KATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      ||++++.+++ +++++++|.|.+ +++||+|||+++++|++|+. ..|..+ ..+|.++|||++|+|+++|++++.+++|
T Consensus         1 m~~~~~~~~~-~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G   78 (375)
T cd08282           1 MKAVVYGGPG-NVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG   78 (375)
T ss_pred             CceEEEecCC-ceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence            6899998887 499999999996 79999999999999999999 777655 3568899999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCcccc----ccccCCCCCcccccccceecccccCCceeeEEecCC--ceEEcC
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTF----HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN--YVVKVD  166 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~----~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~--~v~~lP  166 (332)
                      |+|+..+..+|+.|.+|++|..++|.+.....    .|+..  .            ....|+|+||+.++.+  .++++|
T Consensus        79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~--~------------~~~~g~~a~y~~v~~~~~~~~~lP  144 (375)
T cd08282          79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVD--M------------GPYGGGQAEYLRVPYADFNLLKLP  144 (375)
T ss_pred             CEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccc--c------------CCCCCeeeeEEEeecccCcEEECC
Confidence            99999999999999999999999998743221    11100  0            0013579999999975  899999


Q ss_pred             CCCChh---hhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC
Q 043260          167 PSIDLS---LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT  243 (332)
Q Consensus       167 ~~~~~~---~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~  243 (332)
                      ++++++   +++.+..++.|||+++ ..+++++|++|+|.|+|++|++++|+++.+|..+|++++++++|+++++++|++
T Consensus       145 ~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~  223 (375)
T cd08282         145 DRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI  223 (375)
T ss_pred             CCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe
Confidence            999998   5677888899999998 788999999999998899999999999999976799999999999999999984


Q ss_pred             eeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChH-----------HHHHHHHHhccCCcEEEEEcCCCC-C------
Q 043260          244 DFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVAS-----------LISEALEATKLGKGKVMAIGAANE-A------  305 (332)
Q Consensus       244 ~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~-----------~~~~~~~~l~~~~G~~v~~G~~~~-~------  305 (332)
                       .+++.+   .++.+.+.++++ .++|++||++|...           .+..++++++++ |+++.+|.... .      
T Consensus       224 -~v~~~~---~~~~~~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~g~~~~~~~~~~~~  297 (375)
T cd08282         224 -PIDFSD---GDPVEQILGLEP-GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPG-GGIGIVGVYVAEDPGAGDA  297 (375)
T ss_pred             -EeccCc---ccHHHHHHHhhC-CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcC-cEEEEEeccCCcccccccc
Confidence             566665   667778888777 58999999999752           588999999998 99998887542 1      


Q ss_pred             -----cccCChHhHhc-CcEEEEee
Q 043260          306 -----KVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       306 -----~~~~~~~~~~~-~~~i~g~~  324 (332)
                           ...++...+.. +..+.++.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~  322 (375)
T cd08282         298 AAKQGELSFDFGLLWAKGLSFGTGQ  322 (375)
T ss_pred             cccCccccccHHHHHhcCcEEEEec
Confidence                 13455555544 66665553

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=3.7e-36  Score=279.58  Aligned_cols=267  Identities=23%  Similarity=0.367  Sum_probs=227.8

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||+++.+++ ++++++++.|+++++||+||+.++++|++|.. ..+.++   +|.++|||++|+|+++|++   +++||
T Consensus         1 ~~a~~~~~~~-~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~   73 (319)
T cd08242           1 MKALVLDGGL-DLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK   73 (319)
T ss_pred             CeeEEEeCCC-cEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence            6899999876 49999999999999999999999999999998 777543   5788999999999999998   68999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCcccccccc-CCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      ||...+..+|+.|.+|..|..+.|......  ++. .+|                  +|++|+.++.++++++|++++++
T Consensus        74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g------------------~~~~~~~v~~~~~~~lP~~~~~~  133 (319)
T cd08242          74 RVVGEINIACGRCEYCRRGLYTHCPNRTVL--GIVDRDG------------------AFAEYLTLPLENLHVVPDLVPDE  133 (319)
T ss_pred             eEEECCCcCCCCChhhhCcCcccCCCCccc--CccCCCC------------------ceEEEEEechHHeEECcCCCCHH
Confidence            999999999999999999999999886544  331 233                  59999999999999999999998


Q ss_pred             hhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP  252 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  252 (332)
                      +++.+ .++.+++..+ +..++++|++|||+|+|.+|++++|+++.+|+ +|++++.++++++.++++|++.+++...  
T Consensus       134 ~aa~~-~~~~~~~~~~-~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~--  208 (319)
T cd08242         134 QAVFA-EPLAAALEIL-EQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPDEA--  208 (319)
T ss_pred             Hhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCccc--
Confidence            88864 3555666644 77889999999999889999999999999999 7999999999999999999998887653  


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                       .         +++.++|++||++|+...+..++++++++ |+++..+... ....++...+.. +.++.++..
T Consensus       209 -~---------~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~~~~~-~~~~~~~~~~~~~~~~i~~~~~  270 (319)
T cd08242         209 -E---------SEGGGFDVVVEATGSPSGLELALRLVRPR-GTVVLKSTYA-GPASFDLTKAVVNEITLVGSRC  270 (319)
T ss_pred             -c---------ccCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccC-CCCccCHHHheecceEEEEEec
Confidence             1         34568999999999877889999999998 9999987655 445666666555 888888754

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=4.5e-36  Score=282.02  Aligned_cols=280  Identities=32%  Similarity=0.486  Sum_probs=235.8

Q ss_pred             eEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCC-CCC--CCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           17 AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKG-FPL--PLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        17 a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~-~~~--~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |++++++. .+++++++.|.+.++||+|||.++++|+.|+. +.+. .+.  ..+|.++|+|++|+|+++|++++.+++|
T Consensus         1 ~~~~~~~~-~~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (343)
T cd05285           1 AAVLHGPG-DLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG   79 (343)
T ss_pred             CceEecCC-ceeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence            46788885 49999999999999999999999999999987 5322 111  2457789999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccc-cCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGL-MPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      |+|+..+..+|+.|.+|+.|.+++|++..+.  +. ..+                  |+|++|+.++.+.++++|+++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------------g~~~~~~~v~~~~~~~lP~~~~~  139 (343)
T cd05285          80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA--ATPPVD------------------GTLCRYVNHPADFCHKLPDNVSL  139 (343)
T ss_pred             CEEEEccccCCCCChhHhCcCcccCcCcccc--ccccCC------------------CceeeeEEecHHHcEECcCCCCH
Confidence            9999999999999999999999999875432  11 112                  45999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      ++++.+ .++.+|++++ +.+++++|++++|.|+|++|++++|+|+.+|.+.|+++++++++.+.++++|++.+++.+. 
T Consensus       140 ~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~-  216 (343)
T cd05285         140 EEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT-  216 (343)
T ss_pred             HHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc-
Confidence            999877 5888999987 7889999999999988999999999999999844999999999999999999999998876 


Q ss_pred             CCch---HHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEee
Q 043260          252 PNKS---ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       252 ~~~~---~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~  324 (332)
                        .+   +.+.+.+.++++++|+|||+.|+...+...+++++++ |+++.+|.... ...+++..+.. ++++.++.
T Consensus       217 --~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~  289 (343)
T cd05285         217 --EDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKP-EVTLPLSAASLREIDIRGVF  289 (343)
T ss_pred             --ccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-CCccCHHHHhhCCcEEEEec
Confidence              44   3677777787778999999999866889999999998 99999997653 34555554454 77777764

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05281 TDH Threonine dehydrogenase

Probab=100.00  E-value=5.1e-36  Score=281.43  Aligned_cols=281  Identities=30%  Similarity=0.412  Sum_probs=233.8

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCC---CCCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGF---PLPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~---~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      ||+++++.++..+++.+.+.|+|.++|++||++++++|++|+. +.+..   .....|.++|||++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   80 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK   80 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence            6899999887679999999999999999999999999999987 54321   1234577899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+..+..+|+.|++|+.+.+++|+...  ..|...+                  |+|++|+.++.++++++|++++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~~~~~v~v~~~~~~~lP~~~~  140 (341)
T cd05281          81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTK--ILGVDTD------------------GCFAEYVVVPEENLWKNDKDIP  140 (341)
T ss_pred             CCCEEEECCccCCCCChHHHCcCcccCcccc--eEeccCC------------------CcceEEEEechHHcEECcCCCC
Confidence            9999999899999999999999999998643  2343333                  3599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      ++.+ ++..++.++++++.  ....+|++|||.|+|.+|++++++++.+|.++|++++++++|.+.++++|++++++.+.
T Consensus       141 ~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~  217 (341)
T cd05281         141 PEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPRE  217 (341)
T ss_pred             HHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCccc
Confidence            8555 45567888888763  45679999999988999999999999999866888888889999999999999988766


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChH--hHhcCcEEEEee
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP--AIALGRNLKGTI  324 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~--~~~~~~~i~g~~  324 (332)
                         .++. .+.+++++.++|++||++|+...+..++++|+++ |+++.+|.... ...+++.  .++.++.+.++.
T Consensus       218 ---~~~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~  287 (341)
T cd05281         218 ---EDVV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPPG-PVDIDLNNLVIFKGLTVQGIT  287 (341)
T ss_pred             ---ccHH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCCC-CcccccchhhhccceEEEEEe
Confidence               6677 7888888779999999999877889999999998 99999997653 2333322  233377777765

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=6e-36  Score=278.15  Aligned_cols=259  Identities=22%  Similarity=0.297  Sum_probs=225.0

Q ss_pred             eeeEEEecCCCC---eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC-CCCCCcccccceeEEEEEeCCCCCCC
Q 043260           15 AAAVVCWGEGEP---WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP-LPLFPRVLGHEGVGMVESIGDEVKEL   89 (332)
Q Consensus        15 ~~a~~~~~~~~~---l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~-~~~~p~v~G~e~~G~Vv~vG~~v~~~   89 (332)
                      |||+++.+++.+   ++++++|.|.+.++||+|||.++++|++|+. +.|.++ ...+|.++|||++|+|+++|++++.+
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            689999887643   7889999999999999999999999999998 777654 24568899999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCC
Q 043260           90 KEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSI  169 (332)
Q Consensus        90 ~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~  169 (332)
                      ++||+|+..+                             .                  .|+|++|+.++...++++|+++
T Consensus        81 ~~Gd~V~~~~-----------------------------~------------------~g~~~~~~~~~~~~~~~ip~~~  113 (324)
T cd08292          81 QVGQRVAVAP-----------------------------V------------------HGTWAEYFVAPADGLVPLPDGI  113 (324)
T ss_pred             CCCCEEEecc-----------------------------C------------------CCcceeEEEEchHHeEECCCCC
Confidence            9999998431                             1                  1459999999999999999999


Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      ++++++.+++.+.+||+++ ...++++|++|||+|+ |.+|++++|+|+.+|+ +++++..++++++.++++|++.+++.
T Consensus       114 ~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~  191 (324)
T cd08292         114 SDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVVST  191 (324)
T ss_pred             CHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEEcC
Confidence            9999999988889999987 5688999999999987 9999999999999999 88988888888888888999999988


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeeccc
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      .+   .++.+.+.++++++++|+|||++|+. .+..++++++++ |+++.+|.......++++..++. ++++.++....
T Consensus       192 ~~---~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (324)
T cd08292         192 EQ---PGWQDKVREAAGGAPISVALDSVGGK-LAGELLSLLGEG-GTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGGR  266 (324)
T ss_pred             CC---chHHHHHHHHhCCCCCcEEEECCCCh-hHHHHHHhhcCC-cEEEEEecCCCCCCcCCHHHHhhCCCEEEEEEcHH
Confidence            76   78888899999888999999999984 778999999998 99999997643445566655555 89999987654

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.4e-35  Score=276.20  Aligned_cols=278  Identities=31%  Similarity=0.471  Sum_probs=235.8

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||+++..+.+++.+++.|.|.+.++||+|+++++++|++|+. ..+..+....|.++|||++|+|+++|++++.+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd   80 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD   80 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence            6899998755669999999999999999999999999999999 777666566788999999999999999999999999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhh
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSL  173 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~  173 (332)
                      +|+..++..|++|.+|+.+.+++|++...  .|...+                  |+|++|+.++...++++|+++++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------------g~~~~~~~v~~~~~~~ip~~~~~~~  140 (332)
T cd08259          81 RVILYYYIPCGKCEYCLSGEENLCRNRAE--YGEEVD------------------GGFAEYVKVPERSLVKLPDNVSDES  140 (332)
T ss_pred             EEEECCCCCCcCChhhhCCCcccCCCccc--cccccC------------------CeeeeEEEechhheEECCCCCCHHH
Confidence            99999989999999999999999998632  243333                  4599999999999999999999999


Q ss_pred             hhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCC
Q 043260          174 AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP  252 (332)
Q Consensus       174 aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  252 (332)
                      ++.+++++.+||+++.. ..+++++++||+|+ |.+|++++++++..|. +|+++.+++++.+.++++|.+.+++..   
T Consensus       141 ~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~---  215 (332)
T cd08259         141 AALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGS---  215 (332)
T ss_pred             HhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecH---
Confidence            99999999999999865 88999999999998 9999999999999999 899998888888888889988877553   


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEee
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~  324 (332)
                       . +.+.+.+..   ++|++++++|.. ....++++++++ |+++.+|........++...... +..+.++.
T Consensus       216 -~-~~~~~~~~~---~~d~v~~~~g~~-~~~~~~~~~~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  281 (332)
T cd08259         216 -K-FSEDVKKLG---GADVVIELVGSP-TIEESLRSLNKG-GRLVLIGNVTPDPAPLRPGLLILKEIRIIGSI  281 (332)
T ss_pred             -H-HHHHHHhcc---CCCEEEECCChH-HHHHHHHHhhcC-CEEEEEcCCCCCCcCCCHHHHHhCCcEEEEec
Confidence             2 555565543   699999999985 688999999998 99999997654222234333333 77777664

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.3e-35  Score=276.80  Aligned_cols=286  Identities=23%  Similarity=0.391  Sum_probs=242.2

Q ss_pred             eeeEEEecCCC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||+++...+.  .+++.+.+.|.+.+++|+||+.++++|++|+. +.|..+. ..+|.++|||++|+|+.+|++++.++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK   80 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence            68999884332  37788888888899999999999999999998 7765432 35688999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|++.+..+|+.|.+|.++.+++|+...+.  |...+                  |+|++|+.++.+.++++|++++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~------------------g~~~~~~~~~~~~~~~~p~~~~  140 (342)
T cd08266          81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGIL--GEHVD------------------GGYAEYVAVPARNLLPIPDNLS  140 (342)
T ss_pred             CCCEEEEccccccccchhhcccccccccccccc--ccccC------------------cceeEEEEechHHceeCCCCCC
Confidence            999999999999999999999999999875332  43333                  3599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +++++.+++++.+|++++.+...+.++++++|+|+ +.+|++++++++..|+ +|+++++++++++.+++++.+.+++..
T Consensus       141 ~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~  219 (342)
T cd08266         141 FEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVIDYR  219 (342)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEecC
Confidence            99999999899999999878888999999999998 7999999999999999 899999999999988888988888776


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHh-cCcEEEEeecc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIA-LGRNLKGTIFG  326 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~-~~~~i~g~~~~  326 (332)
                      +   .++.+.+.+.+.+.++|++++++|. ..+..++++++++ |+++.+|........++....+ .++++.++...
T Consensus       220 ~---~~~~~~~~~~~~~~~~d~~i~~~g~-~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (342)
T cd08266         220 K---EDFVREVRELTGKRGVDVVVEHVGA-ATWEKSLKSLARG-GRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMG  292 (342)
T ss_pred             C---hHHHHHHHHHhCCCCCcEEEECCcH-HHHHHHHHHhhcC-CEEEEEecCCCCCCCcCHHHHhhcceEEEEEecC
Confidence            5   6777777777766689999999998 4788999999998 9999999776533455553333 38888887644

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=100.00  E-value=2.2e-35  Score=277.08  Aligned_cols=284  Identities=29%  Similarity=0.440  Sum_probs=241.3

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||+++++.+. +.+++.+.|+++++||+||+.++++|++|+. +.+.+ ....|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~-~~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd   78 (343)
T cd08236           1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTG-AYHPPLVLGHEFSGTVEEVGSGVDDLAVGD   78 (343)
T ss_pred             CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCC-CCCCCcccCcceEEEEEEECCCCCcCCCCC
Confidence            68999998865 9999999999999999999999999999998 76654 234578899999999999999999999999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhh
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSL  173 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~  173 (332)
                      +|+..+...|+.|.+|..|.+..|......  |...+                  |+|++|+.++.+.++++|+++++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------g~~~~~~~~~~~~~~~lP~~~~~~~  138 (343)
T cd08236          79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDYI--GSRRD------------------GAFAEYVSVPARNLIKIPDHVDYEE  138 (343)
T ss_pred             EEEEcCCCCCCCChhHHCcChhhCCCcceE--ecccC------------------CcccceEEechHHeEECcCCCCHHH
Confidence            999999999999999999999999886433  33233                  4599999999999999999999999


Q ss_pred             hhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          174 AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       174 aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      ++++ .++.+||+++. ..+++++++|+|+|+|.+|++++|+|+.+|+..|+++++++++.++++++|++.+++.+.   
T Consensus       139 aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~---  213 (343)
T cd08236         139 AAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE---  213 (343)
T ss_pred             HHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc---
Confidence            9888 57889999884 778999999999988999999999999999944999999999999999999999998876   


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-Cc-ccCChHhHhc-CcEEEEeeccc
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AK-VPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~-~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      .. .+.+.+..+++++|++||+++....+..++++++++ |+++.+|.... .. ...++..++. +.++.++....
T Consensus       214 ~~-~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (343)
T cd08236         214 ED-VEKVRELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSY  288 (343)
T ss_pred             cc-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeecc
Confidence            55 667777777778999999998877889999999998 99999997653 11 2223333344 88888887643

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.4e-35  Score=276.62  Aligned_cols=275  Identities=28%  Similarity=0.431  Sum_probs=235.0

Q ss_pred             eeeEEEecCCC----CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCC
Q 043260           15 AAAVVCWGEGE----PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKEL   89 (332)
Q Consensus        15 ~~a~~~~~~~~----~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~   89 (332)
                      ||++++.++++    ++++.+.+.|.+.++||+||+.++++|++|+. +.|..+...+|.++|||++|+|+++|++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF   80 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence            68999988873    58888888888999999999999999999999 87776655678899999999999999999999


Q ss_pred             CCCCEEEeecc-cCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCC
Q 043260           90 KEGDIVIPTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        90 ~vGdrV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      ++||+|+..+. .+|+.|.+|..+.+++|....+.  |+..+|                  +|++|+.++.+.++++|++
T Consensus        81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g------------------~~~~~~~~~~~~~~~lp~~  140 (329)
T cd08298          81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFT--GYTVDG------------------GYAEYMVADERFAYPIPED  140 (329)
T ss_pred             cCCCEEEEeccCCCCCCChhHhCcChhhCCCcccc--ccccCC------------------ceEEEEEecchhEEECCCC
Confidence            99999976544 68999999999999999987655  554444                  4999999999999999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      +++.+++.+++++.|||+++ +.++++++++++|+|+|++|++++++++..|. +|++++.++++++.++++|++.+++.
T Consensus       141 ~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~  218 (329)
T cd08298         141 YDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAGDS  218 (329)
T ss_pred             CCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEecc
Confidence            99999999999999999998 88999999999999999999999999999998 99999999999999999999888876


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhcCcEEEEeec
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIF  325 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~~~~i~g~~~  325 (332)
                      ..   .          .++++|+++++.+....+..++++++++ |+++.+|........+++..+..+..|.++..
T Consensus       219 ~~---~----------~~~~vD~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~  281 (329)
T cd08298         219 DD---L----------PPEPLDAAIIFAPVGALVPAALRAVKKG-GRVVLAGIHMSDIPAFDYELLWGEKTIRSVAN  281 (329)
T ss_pred             Cc---c----------CCCcccEEEEcCCcHHHHHHHHHHhhcC-CEEEEEcCCCCCCCccchhhhhCceEEEEecC
Confidence            54   1          2347999999987777899999999998 99999986432223344444334667766543

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=100.00  E-value=1.7e-35  Score=276.32  Aligned_cols=280  Identities=27%  Similarity=0.454  Sum_probs=237.4

Q ss_pred             eeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCE
Q 043260           16 AAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDI   94 (332)
Q Consensus        16 ~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdr   94 (332)
                      ||+++++++..+++++.+.|.+.+++++|++.++++|++|+. +.+..+...+|.++|||++|+|+++|++++++++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~   80 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR   80 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence            688999886669999999999999999999999999999998 7776555567889999999999999999999999999


Q ss_pred             EEeecc-cCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhh
Q 043260           95 VIPTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSL  173 (332)
Q Consensus        95 V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~  173 (332)
                      |++.++ .+|++|.+|++++.+.|++..+.  ++..+|                  +|++|+.++...++++|+++++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g------------------~~~~~~~v~~~~~~~~p~~~~~~~  140 (330)
T cd08245          81 VGVGWLVGSCGRCEYCRRGLENLCQKAVNT--GYTTQG------------------GYAEYMVADAEYTVLLPDGLPLAQ  140 (330)
T ss_pred             EEEccccCCCCCChhhhCcCcccCcCcccc--CcccCC------------------ccccEEEEcHHHeEECCCCCCHHH
Confidence            988665 78999999999999999997655  433333                  599999999999999999999999


Q ss_pred             hhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          174 AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       174 aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      ++.+.+.+.+||+++.. ..++++++|||+|+|.+|++++++++..|. +|+++++++++.+.++++|++.+++...   
T Consensus       141 ~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---  215 (330)
T cd08245         141 AAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGA---  215 (330)
T ss_pred             hhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCC---
Confidence            99999999999998844 789999999999988899999999999999 8999999999999999999998887654   


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      ......    .. .++|++|+++++...+..++++++++ |+++.+|........++...++. +.++.++..+
T Consensus       216 ~~~~~~----~~-~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (330)
T cd08245         216 ELDEQA----AA-GGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHG  283 (330)
T ss_pred             cchHHh----cc-CCCCEEEECCCcHHHHHHHHHhcccC-CEEEEECCCCCCccccchHHHHhCCCEEEEeccC
Confidence            333222    22 37999999988777889999999998 99999997653323333444544 7788887654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=100.00  E-value=6.7e-35  Score=272.54  Aligned_cols=281  Identities=28%  Similarity=0.427  Sum_probs=239.2

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||+++.+++. +++.+.+.|++.++||+||+.++++|+.|+. ..|.++. .+|.++|+|++|+|+.+|++++.+++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd   78 (334)
T cd08234           1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD   78 (334)
T ss_pred             CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence            68999998875 9999999999999999999999999999999 7776543 3788999999999999999999999999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhh
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSL  173 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~  173 (332)
                      +|+..+...|+.|.+|..+.++.|+.....  |...+|                  +|++|+.++.++++++|+++++.+
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g------------------~~~~~~~v~~~~~~~lP~~~~~~~  138 (334)
T cd08234          79 RVAVDPNIYCGECFYCRRGRPNLCENLTAV--GVTRNG------------------GFAEYVVVPAKQVYKIPDNLSFEE  138 (334)
T ss_pred             EEEEcCCcCCCCCccccCcChhhCCCccee--ccCCCC------------------cceeEEEecHHHcEECcCCCCHHH
Confidence            999999999999999999999999887532  332333                  599999999999999999999999


Q ss_pred             hhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          174 AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       174 aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      ++.+ .++.++++++ +.+++++|+++||+|+|.+|.+++++++..|++.|+++++++++.+.++++|++.+++...   
T Consensus       139 aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---  213 (334)
T cd08234         139 AALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR---  213 (334)
T ss_pred             Hhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC---
Confidence            9876 6888999987 7889999999999988999999999999999944899999999999999999988888765   


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEEeec
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      .++...  +.+.+.++|++||+++....+..++++++++ |+++.+|.... ....++...+.. ++++.++..
T Consensus       214 ~~~~~~--~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (334)
T cd08234         214 EDPEAQ--KEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPFEIFQKELTIIGSFI  284 (334)
T ss_pred             CCHHHH--HHhcCCCCcEEEECCCChHHHHHHHHHHhcC-CEEEEEecCCCCCCcccCHHHHHhCCcEEEEecc
Confidence            444444  4455568999999998767889999999998 99999997653 345555555553 778877653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=6.3e-35  Score=273.71  Aligned_cols=273  Identities=23%  Similarity=0.354  Sum_probs=221.3

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC-----------CCCCCcccccceeEEEEEe
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP-----------LPLFPRVLGHEGVGMVESI   82 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~-----------~~~~p~v~G~e~~G~Vv~v   82 (332)
                      |||+++.++  .+++++.+.|+++++||+||+.++++|++|+. ..+...           ...+|.++|+|++|+|+++
T Consensus         1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v   78 (341)
T cd08262           1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY   78 (341)
T ss_pred             CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence            689999876  59999999999999999999999999999998 665221           2335788999999999999


Q ss_pred             CCCCCC-CCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCc
Q 043260           83 GDEVKE-LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANY  161 (332)
Q Consensus        83 G~~v~~-~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~  161 (332)
                      |++++. +++||+|+..+..+|+.|.+|..|              +...                ..|+|+||+.++.+.
T Consensus        79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~--------------~~~~----------------~~g~~~~~~~v~~~~  128 (341)
T cd08262          79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIG--------------LSPE----------------APGGYAEYMLLSEAL  128 (341)
T ss_pred             CCCCcCCCCCCCEEEecCCcCCCCChhhhCC--------------CCcC----------------CCCceeeeEEechHH
Confidence            999987 999999999999999999999322              1110                124699999999999


Q ss_pred             eEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC
Q 043260          162 VVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG  241 (332)
Q Consensus       162 v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg  241 (332)
                      ++++|+++++++++ ++.++.+||+++ ..+++++|++|||+|+|++|.+++|+++.+|++.++++++++++.+.++++|
T Consensus       129 ~~~lP~~~s~~~a~-~~~~~~~a~~~~-~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g  206 (341)
T cd08262         129 LLRVPDGLSMEDAA-LTEPLAVGLHAV-RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMG  206 (341)
T ss_pred             eEECCCCCCHHHhh-hhhhHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcC
Confidence            99999999999887 556888999985 7889999999999988999999999999999966888888999999999999


Q ss_pred             CCeeeCCCCCCCc-hHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHh-HhcCcE
Q 043260          242 MTDFINPDDEPNK-SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPA-IALGRN  319 (332)
Q Consensus       242 a~~v~~~~~~~~~-~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~-~~~~~~  319 (332)
                      ++++++++..... .+. .+.+.+.+.++|++||++|+...+..++++++++ |+++.+|.... ...+.+.. +..+++
T Consensus       207 ~~~~i~~~~~~~~~~~~-~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~  283 (341)
T cd08262         207 ADIVVDPAADSPFAAWA-AELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGVCME-SDNIEPALAIRKELT  283 (341)
T ss_pred             CcEEEcCCCcCHHHHHH-HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCC-CCccCHHHHhhcceE
Confidence            9999987651100 222 3445556668999999999855788999999998 99999997753 22233332 233777


Q ss_pred             EEEee
Q 043260          320 LKGTI  324 (332)
Q Consensus       320 i~g~~  324 (332)
                      +.++.
T Consensus       284 ~~~~~  288 (341)
T cd08262         284 LQFSL  288 (341)
T ss_pred             EEEEe
Confidence            77654

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=100.00  E-value=7.8e-35  Score=273.25  Aligned_cols=276  Identities=30%  Similarity=0.406  Sum_probs=231.4

Q ss_pred             ecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCC---CCCCCCcccccceeEEEEEeCCCCCCCCCCCEEE
Q 043260           21 WGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGF---PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVI   96 (332)
Q Consensus        21 ~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~---~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV~   96 (332)
                      +++++++++++.|.|.|.++||+||+.++++|++|+. +.+..   ....+|.++|||++|+|+++|++++.+++||+|+
T Consensus         5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   84 (340)
T TIGR00692         5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS   84 (340)
T ss_pred             ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence            4677779999999999999999999999999999988 54431   1234577899999999999999999999999999


Q ss_pred             eecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhhhhh
Q 043260           97 PTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF  176 (332)
Q Consensus        97 ~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa~  176 (332)
                      ..++..|+.|.+|..+.++.|.+..++  |+...|                  +|++|+.++.+.++++|+++++++++ 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g------------------~~~~~~~~~~~~~~~lp~~~~~~~a~-  143 (340)
T TIGR00692        85 VETHIVCGKCYACRRGQYHVCQNTKIF--GVDTDG------------------CFAEYAVVPAQNIWKNPKSIPPEYAT-  143 (340)
T ss_pred             ECCcCCCCCChhhhCcChhhCcCcceE--eecCCC------------------cceeEEEeehHHcEECcCCCChHhhh-
Confidence            999999999999999999999997544  443333                  59999999999999999999986554 


Q ss_pred             cccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchH
Q 043260          177 LSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSI  256 (332)
Q Consensus       177 l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~  256 (332)
                      ++.++.+|++++  .....+|++++|.|+|++|++++|+++.+|.+.|+++++++++.+.++++|++.+++...   .++
T Consensus       144 ~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~  218 (340)
T TIGR00692       144 IQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK---EDV  218 (340)
T ss_pred             hcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc---cCH
Confidence            566888998876  345789999999888999999999999999844888888888999999999999998876   778


Q ss_pred             HHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChH-hHhc-CcEEEEee
Q 043260          257 SELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP-AIAL-GRNLKGTI  324 (332)
Q Consensus       257 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~-~~~~-~~~i~g~~  324 (332)
                      .+.+.++++++++|++||++++...+...+++++++ |+++.+|.... ..++++. .+++ ++++.+..
T Consensus       219 ~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~  286 (340)
T TIGR00692       219 VKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPG-KVTIDFTNKVIFKGLTIYGIT  286 (340)
T ss_pred             HHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCC-CEEEEEccCCC-CcccchhhhhhhcceEEEEEe
Confidence            888888888779999999999877889999999998 99999997643 2333333 3444 77777654

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=100.00  E-value=1.2e-34  Score=271.62  Aligned_cols=280  Identities=29%  Similarity=0.438  Sum_probs=226.4

Q ss_pred             EEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-cc-CCCCC--CCCCcccccceeEEEEEeCCCCCCCCCCCE
Q 043260           19 VCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SS-KGFPL--PLFPRVLGHEGVGMVESIGDEVKELKEGDI   94 (332)
Q Consensus        19 ~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~-g~~~~--~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdr   94 (332)
                      ++++.+. +++++.+.|+++++||+||+.++++|++|+. +. +..+.  ..+|.++|||++|+|+++|++++.|++||+
T Consensus         2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~   80 (339)
T cd08232           2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR   80 (339)
T ss_pred             eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence            5677765 9999999999999999999999999999987 53 32211  245778999999999999999999999999


Q ss_pred             EEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhhh
Q 043260           95 VIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLA  174 (332)
Q Consensus        95 V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~a  174 (332)
                      |+..+..+|+.|.+|..|+.+.|++..+.  +... +.            ....|+|++|+.++.+.++++|+++++++|
T Consensus        81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~-~~------------~~~~g~~~~~v~v~~~~~~~iP~~~~~~~a  145 (339)
T cd08232          81 VAVNPSRPCGTCDYCRAGRPNLCLNMRFL--GSAM-RF------------PHVQGGFREYLVVDASQCVPLPDGLSLRRA  145 (339)
T ss_pred             EEEccCCcCCCChHHhCcCcccCccccce--eecc-cc------------CCCCCceeeEEEechHHeEECcCCCCHHHh
Confidence            99999999999999999999999986543  2110 00            001246999999999999999999999998


Q ss_pred             hhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCc
Q 043260          175 GFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK  254 (332)
Q Consensus       175 a~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~  254 (332)
                      +. ..++.+||+++.+...+ ++++|||.|+|.+|++++|+++.+|..+|+++++++++.++++++|+++++++++   .
T Consensus       146 a~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~---~  220 (339)
T cd08232         146 AL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR---D  220 (339)
T ss_pred             hh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc---h
Confidence            76 46888999988655555 9999999888999999999999999867999999999999999999999998765   3


Q ss_pred             hHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEee
Q 043260          255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       255 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~  324 (332)
                      ++.+ +  .....++|++||+.+....+...+++|+++ |+++.+|... ....+++..++. ++++.++.
T Consensus       221 ~~~~-~--~~~~~~vd~vld~~g~~~~~~~~~~~L~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~  286 (339)
T cd08232         221 PLAA-Y--AADKGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLG-GPVPLPLNALVAKELDLRGSF  286 (339)
T ss_pred             hhhh-h--hccCCCccEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC-CCccCcHHHHhhcceEEEEEe
Confidence            3221 1  122346999999999766889999999998 9999998655 334455554444 77877764

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2.6e-34  Score=270.29  Aligned_cols=274  Identities=23%  Similarity=0.336  Sum_probs=221.8

Q ss_pred             eeeEEEecCCCC--eEEEE-EecCCCCCCeEEEEEeeeecCccccc-ccCCCC--------------------CCCCCcc
Q 043260           15 AAAVVCWGEGEP--WKVEE-IQVEPPKATEVRFKMLYASICHTDVL-SSKGFP--------------------LPLFPRV   70 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~-~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~--------------------~~~~p~v   70 (332)
                      ||++++++++.+  +.+.+ .+.|.+.+++|+|||.++++|++|+. ..|.++                    ...+|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            688888876542  55543 47777899999999999999999998 766432                    2457889


Q ss_pred             cccceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCC
Q 043260           71 LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCST  150 (332)
Q Consensus        71 ~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~  150 (332)
                      +|||++|+|+++|+++++|++||+|+..+..+|+.|..|        ......  |...+                  |+
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~--------~~~~~~--~~~~~------------------g~  132 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDP--------ADIDYI--GSERD------------------GG  132 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccc--------cccccc--CCCCC------------------cc
Confidence            999999999999999999999999999888888877653        111111  22222                  35


Q ss_pred             ceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          151 MTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       151 ~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      |++|+.++.+.++++|+++++.+++.+.+++.|||+++ ...++++|++|||+|+ |++|++++++++.+|+ +|++++.
T Consensus       133 ~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~~  210 (350)
T cd08274         133 FAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVAG  210 (350)
T ss_pred             ceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeC
Confidence            99999999999999999999999999999999999987 7788999999999998 9999999999999999 7888876


Q ss_pred             CcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccC
Q 043260          230 NPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPL  309 (332)
Q Consensus       230 ~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~  309 (332)
                      ++ +++.++++|++.+++...   ....+  .+.+.+.++|++||++|+ ..+..++++++++ |+++.+|.......++
T Consensus       211 ~~-~~~~~~~~g~~~~~~~~~---~~~~~--~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~  282 (350)
T cd08274         211 AA-KEEAVRALGADTVILRDA---PLLAD--AKALGGEPVDVVADVVGG-PLFPDLLRLLRPG-GRYVTAGAIAGPVVEL  282 (350)
T ss_pred             ch-hhHHHHhcCCeEEEeCCC---ccHHH--HHhhCCCCCcEEEecCCH-HHHHHHHHHhccC-CEEEEecccCCccccC
Confidence            65 788889999986665543   33333  456667789999999998 5889999999998 9999999764333677


Q ss_pred             ChHhHhc-CcEEEEeecc
Q 043260          310 NFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       310 ~~~~~~~-~~~i~g~~~~  326 (332)
                      +...++. ++++.++...
T Consensus       283 ~~~~~~~~~~~~~~~~~~  300 (350)
T cd08274         283 DLRTLYLKDLTLFGSTLG  300 (350)
T ss_pred             CHHHhhhcceEEEEeecC
Confidence            7777555 8899887764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=3.9e-34  Score=268.80  Aligned_cols=221  Identities=19%  Similarity=0.228  Sum_probs=188.8

Q ss_pred             eEEEEEecCCCC-CCeEEEEEeeeecCccccc-cc---CCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEeeccc
Q 043260           27 WKVEEIQVEPPK-ATEVRFKMLYASICHTDVL-SS---KGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIG  101 (332)
Q Consensus        27 l~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~-~~---g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~  101 (332)
                      +++++.+.|+|. ++||||||+++|||+.|.. ..   +......+|.++|||++|+|+++|+++++|++||||+...  
T Consensus        23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~--  100 (345)
T cd08293          23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN--  100 (345)
T ss_pred             eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence            888999999874 9999999999999999864 32   2111235678999999999999999999999999998310  


Q ss_pred             CCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhh----hhhc
Q 043260          102 ECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSL----AGFL  177 (332)
Q Consensus       102 ~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~----aa~l  177 (332)
                                                                     ++|+||+.++++.++++|+++++.+    ++++
T Consensus       101 -----------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~  133 (345)
T cd08293         101 -----------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAV  133 (345)
T ss_pred             -----------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhhhc
Confidence                                                           2499999999999999999864432    4456


Q ss_pred             ccchhhhHHHHHHhhCCCCC--CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCCeeeCCCCCCC
Q 043260          178 SCGYSSGFGAAWKEFKVEKG--SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMTDFINPDDEPN  253 (332)
Q Consensus       178 ~~~~~ta~~al~~~~~~~~g--~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~  253 (332)
                      +.++.|||+++.+..++++|  ++|||+|+ |++|++++|+|+.+|+++|+++++++++++.+++ +|+++++++.+   
T Consensus       134 ~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~---  210 (345)
T cd08293         134 GLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT---  210 (345)
T ss_pred             CcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC---
Confidence            67899999998777788877  99999998 9999999999999998679999999999998876 99999999887   


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      .++.+.++++++ .++|+|||++|+. .+..++++++++ |+++.+|..
T Consensus       211 ~~~~~~i~~~~~-~gvd~vid~~g~~-~~~~~~~~l~~~-G~iv~~G~~  256 (345)
T cd08293         211 DNVAERLRELCP-EGVDVYFDNVGGE-ISDTVISQMNEN-SHIILCGQI  256 (345)
T ss_pred             CCHHHHHHHHCC-CCceEEEECCCcH-HHHHHHHHhccC-CEEEEEeee
Confidence            778888888876 5899999999985 679999999998 999999954

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=5e-34  Score=267.49  Aligned_cols=263  Identities=29%  Similarity=0.387  Sum_probs=220.5

Q ss_pred             eeeEEEecCCCC---eEEEEEecCCCCC-CeEEEEEeeeecCccccc-ccCCCCC-CC----CCcccccceeEEEEEeCC
Q 043260           15 AAAVVCWGEGEP---WKVEEIQVEPPKA-TEVRFKMLYASICHTDVL-SSKGFPL-PL----FPRVLGHEGVGMVESIGD   84 (332)
Q Consensus        15 ~~a~~~~~~~~~---l~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~-~~g~~~~-~~----~p~v~G~e~~G~Vv~vG~   84 (332)
                      |||+++++.+.+   +.+++.|.|+|.+ +||+||+.++++|++|+. +.+..+. ..    .|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            799999988764   8999999999887 999999999999999998 7776542 12    677999999999999999


Q ss_pred             CCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEE
Q 043260           85 EVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVK  164 (332)
Q Consensus        85 ~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~  164 (332)
                      +++.+++||+|+....                                              ..|+|++|+.++.+.+++
T Consensus        81 ~v~~~~~Gd~V~~~~~----------------------------------------------~~g~~~~~~~v~~~~~~~  114 (341)
T cd08290          81 GVKSLKPGDWVIPLRP----------------------------------------------GLGTWRTHAVVPADDLIK  114 (341)
T ss_pred             CCCCCCCCCEEEecCC----------------------------------------------CCccchheEeccHHHeEe
Confidence            9999999999984311                                              124699999999999999


Q ss_pred             cCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc----chHHHHHH
Q 043260          165 VDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP----CRKDKGEA  239 (332)
Q Consensus       165 lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~----~~~~~~~~  239 (332)
                      +|+++++++++.+++++.|||+++.....+++|++|||+|+ |++|++++++|+..|. +++++..++    ++++.+++
T Consensus       115 lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~  193 (341)
T cd08290         115 VPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERLKA  193 (341)
T ss_pred             CCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHHHh
Confidence            99999999999999999999999877778999999999987 9999999999999998 788877665    66788889


Q ss_pred             cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-Cc
Q 043260          240 FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GR  318 (332)
Q Consensus       240 lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~  318 (332)
                      +|++++++++.....++.+.+.++.++ ++|+|||++|+. .+...+++++++ |+++.+|........++...++. ++
T Consensus       194 ~g~~~~~~~~~~~~~~~~~~i~~~~~~-~~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~  270 (341)
T cd08290         194 LGADHVLTEEELRSLLATELLKSAPGG-RPKLALNCVGGK-SATELARLLSPG-GTMVTYGGMSGQPVTVPTSLLIFKDI  270 (341)
T ss_pred             cCCCEEEeCcccccccHHHHHHHHcCC-CceEEEECcCcH-hHHHHHHHhCCC-CEEEEEeccCCCCcccCHHHHhhCCc
Confidence            999999987651011677778887777 899999999985 677899999998 99999986543334566644444 89


Q ss_pred             EEEEeeccc
Q 043260          319 NLKGTIFGG  327 (332)
Q Consensus       319 ~i~g~~~~~  327 (332)
                      ++.++....
T Consensus       271 ~~~~~~~~~  279 (341)
T cd08290         271 TLRGFWLTR  279 (341)
T ss_pred             eEEEEecHH
Confidence            999987654

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=7.6e-34  Score=256.37  Aligned_cols=259  Identities=27%  Similarity=0.447  Sum_probs=219.3

Q ss_pred             eEEEEEeeeecCccccc-ccCCCC-CCCCCcccccceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCC
Q 043260           41 EVRFKMLYASICHTDVL-SSKGFP-LPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCL  118 (332)
Q Consensus        41 eVlVkv~~~~i~~~D~~-~~g~~~-~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~  118 (332)
                      ||+|||.++++|+.|+. +.+..+ ...+|.++|||++|+|+++|++++.|++||+|+..+..+|+.|.+|+.    .|.
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~   76 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP   76 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence            68999999999999999 777654 345688999999999999999999999999999999999999999997    676


Q ss_pred             CCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCC
Q 043260          119 KYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGS  198 (332)
Q Consensus       119 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~  198 (332)
                      +....  +....|                  +|++|+.++.+.++++|+++++++++.+++++.+||+++.+...+++++
T Consensus        77 ~~~~~--~~~~~g------------------~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~  136 (271)
T cd05188          77 GGGIL--GEGLDG------------------GFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGD  136 (271)
T ss_pred             CCCEe--ccccCC------------------cceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCC
Confidence            66543  443444                  5999999999999999999999999999999999999987777779999


Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~  278 (332)
                      +|||+|+|++|++++++++..|. +|+++++++++.+.++++|++.+++..+   .+..+.+. ...+.++|++|++++.
T Consensus       137 ~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~-~~~~~~~d~vi~~~~~  211 (271)
T cd05188         137 TVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE---EDLEEELR-LTGGGGADVVIDAVGG  211 (271)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc---CCHHHHHH-HhcCCCCCEEEECCCC
Confidence            99999995599999999999997 9999999999999999999998888776   55666665 5556689999999998


Q ss_pred             hHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeeccccc
Q 043260          279 ASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIFGGIK  329 (332)
Q Consensus       279 ~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~  329 (332)
                      ...+..++++++++ |+++.+|.... .........+.+++++.++..+.+.
T Consensus       212 ~~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (271)
T cd05188         212 PETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTRE  262 (271)
T ss_pred             HHHHHHHHHhcccC-CEEEEEccCCCCCCcccHHHHHhcceEEEEeecCCHH
Confidence            55788999999998 99999998765 2222233333349999999887653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=7e-34  Score=266.67  Aligned_cols=258  Identities=22%  Similarity=0.261  Sum_probs=210.2

Q ss_pred             eeeeEEEecCCC-CeEEEEEec----CCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccce--eEEEEEeCC
Q 043260           14 YAAAVVCWGEGE-PWKVEEIQV----EPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEG--VGMVESIGD   84 (332)
Q Consensus        14 ~~~a~~~~~~~~-~l~~~~~~~----p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~--~G~Vv~vG~   84 (332)
                      .+|++...++.. .+++.+.+.    |+|++|||||||++++||+.|++ +.|..+. ...|.++|++.  .|.+..+|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~   86 (338)
T cd08295           7 ILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS   86 (338)
T ss_pred             EEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence            456666544432 489999887    88999999999999999999999 7764332 35678899865  455556788


Q ss_pred             CCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecC-CceE
Q 043260           85 EVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDA-NYVV  163 (332)
Q Consensus        85 ~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~-~~v~  163 (332)
                      ++++|++||+|+..                                                  |+|+||+.++. ..++
T Consensus        87 ~v~~~~vGd~V~~~--------------------------------------------------g~~aey~~v~~~~~~~  116 (338)
T cd08295          87 GNPDFKVGDLVWGF--------------------------------------------------TGWEEYSLIPRGQDLR  116 (338)
T ss_pred             CCCCCCCCCEEEec--------------------------------------------------CCceeEEEecchhcee
Confidence            89899999999821                                                  24999999999 7999


Q ss_pred             EcC-CCCChh-hhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-
Q 043260          164 KVD-PSIDLS-LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-  239 (332)
Q Consensus       164 ~lP-~~~~~~-~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-  239 (332)
                      ++| ++++++ +++.+++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++++++ 
T Consensus       117 ~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~  195 (338)
T cd08295         117 KIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK  195 (338)
T ss_pred             ecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh
Confidence            995 678886 788899999999999877889999999999998 9999999999999999 89999999999999988 


Q ss_pred             cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcc-----cCChHhH
Q 043260          240 FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKV-----PLNFPAI  314 (332)
Q Consensus       240 lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~-----~~~~~~~  314 (332)
                      +|+++++++.+  ..++.+.+++.++ .++|+|||++|+ ..+..++++++++ |+++.+|.......     .+++..+
T Consensus       196 lGa~~vi~~~~--~~~~~~~i~~~~~-~gvd~v~d~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~  270 (338)
T cd08295         196 LGFDDAFNYKE--EPDLDAALKRYFP-NGIDIYFDNVGG-KMLDAVLLNMNLH-GRIAACGMISQYNLEWPEGVRNLLNI  270 (338)
T ss_pred             cCCceeEEcCC--cccHHHHHHHhCC-CCcEEEEECCCH-HHHHHHHHHhccC-cEEEEecccccCCCCCCCCccCHHHH
Confidence            99999998654  1467777877776 589999999998 6889999999998 99999997653111     1344444


Q ss_pred             hc-CcEEEEeeccc
Q 043260          315 AL-GRNLKGTIFGG  327 (332)
Q Consensus       315 ~~-~~~i~g~~~~~  327 (332)
                      +. ++++.|++...
T Consensus       271 ~~~~~~i~g~~~~~  284 (338)
T cd08295         271 IYKRVKIQGFLVGD  284 (338)
T ss_pred             hhccceeeEEEehh
Confidence            44 78888876544

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-33  Score=265.78  Aligned_cols=260  Identities=20%  Similarity=0.258  Sum_probs=209.4

Q ss_pred             cceeeeEEEecCC------CCeEEEE---EecCC-CCCCeEEEEEeeeecCccccc-ccCCCCCCCCCccccc--ceeEE
Q 043260           12 IYYAAAVVCWGEG------EPWKVEE---IQVEP-PKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGH--EGVGM   78 (332)
Q Consensus        12 ~~~~~a~~~~~~~------~~l~~~~---~~~p~-~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~--e~~G~   78 (332)
                      ..++|.|++...-      +.+++.+   .+.|. +++|||||||.++++|+.|+. +.+..+....|.++|+  |++|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~G~   85 (348)
T PLN03154          6 VVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGFGV   85 (348)
T ss_pred             cccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEeeEE
Confidence            3456888884322      1277766   35663 479999999999999999987 5432322346889998  88999


Q ss_pred             EEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEec
Q 043260           79 VESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVD  158 (332)
Q Consensus        79 Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~  158 (332)
                      |..+|+++++|++||+|+..                                                  |+|+||..++
T Consensus        86 v~~vg~~v~~~~~Gd~V~~~--------------------------------------------------~~~aey~~v~  115 (348)
T PLN03154         86 SKVVDSDDPNFKPGDLISGI--------------------------------------------------TGWEEYSLIR  115 (348)
T ss_pred             EEEEecCCCCCCCCCEEEec--------------------------------------------------CCcEEEEEEe
Confidence            99999999999999999821                                                  3599999998


Q ss_pred             CC--ceEE--cCCCCChh-hhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          159 AN--YVVK--VDPSIDLS-LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       159 ~~--~v~~--lP~~~~~~-~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      ..  ++++  +|++++++ ++|.+++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++
T Consensus       116 ~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~  194 (348)
T PLN03154        116 SSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQ  194 (348)
T ss_pred             ccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHH
Confidence            74  3544  48999986 688899999999999877788999999999998 9999999999999999 8999999999


Q ss_pred             hHHHHH-HcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcc----
Q 043260          233 RKDKGE-AFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKV----  307 (332)
Q Consensus       233 ~~~~~~-~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~----  307 (332)
                      ++++++ ++|++.++++++  ..++.+.+++.+++ ++|++||++|+ ..+..++++++++ |+++.+|.......    
T Consensus       195 k~~~~~~~lGa~~vi~~~~--~~~~~~~i~~~~~~-gvD~v~d~vG~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~  269 (348)
T PLN03154        195 KVDLLKNKLGFDEAFNYKE--EPDLDAALKRYFPE-GIDIYFDNVGG-DMLDAALLNMKIH-GRIAVCGMVSLNSLSASQ  269 (348)
T ss_pred             HHHHHHHhcCCCEEEECCC--cccHHHHHHHHCCC-CcEEEEECCCH-HHHHHHHHHhccC-CEEEEECccccCCCCCCC
Confidence            999887 799999998864  13677778777764 89999999998 5889999999998 99999997653221    


Q ss_pred             -cCChHhHhc-CcEEEEeeccc
Q 043260          308 -PLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       308 -~~~~~~~~~-~~~i~g~~~~~  327 (332)
                       .++...++. ++++.|++.+.
T Consensus       270 ~~~~~~~~~~k~~~i~g~~~~~  291 (348)
T PLN03154        270 GIHNLYNLISKRIRMQGFLQSD  291 (348)
T ss_pred             CcccHHHHhhccceEEEEEHHH
Confidence             135555555 89999987654

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=3.2e-33  Score=260.48  Aligned_cols=252  Identities=24%  Similarity=0.251  Sum_probs=207.3

Q ss_pred             eeeeEEEecC--CC----CeEEEEEecCCCCCCeEEEEEeeeecCcccccccCCCCCCCCCcccccceeEEEEEeCCCCC
Q 043260           14 YAAAVVCWGE--GE----PWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        14 ~~~a~~~~~~--~~----~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      +||+|++...  +.    .+++++.+.|+|++|||||||++++||+.|..+...  ...+|.++|+|++|+|++   .++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~~~~p~v~G~e~~G~V~~---~~~   76 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--LNEGDTMIGTQVAKVIES---KNS   76 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc--CCCCCcEecceEEEEEec---CCC
Confidence            6899999873  22    388999999999999999999999999887652211  124688999999999995   446


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCC---ceEE
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN---YVVK  164 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~---~v~~  164 (332)
                      .|++||||+..                                                  ++|++|+.++.+   .+++
T Consensus        77 ~~~~Gd~V~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~  106 (329)
T cd08294          77 KFPVGTIVVAS--------------------------------------------------FGWRTHTVSDGKDQPDLYK  106 (329)
T ss_pred             CCCCCCEEEee--------------------------------------------------CCeeeEEEECCccccceEE
Confidence            79999999821                                                  138999999999   9999


Q ss_pred             cCCCCC--h---hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 043260          165 VDPSID--L---SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE  238 (332)
Q Consensus       165 lP~~~~--~---~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~  238 (332)
                      +|++++  +   ..++++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++.++
T Consensus       107 iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~  185 (329)
T cd08294         107 LPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLK  185 (329)
T ss_pred             CCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            999998  2   2334677899999999888889999999999997 9999999999999999 8999999999999999


Q ss_pred             HcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-Cc-----ccCChH
Q 043260          239 AFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AK-----VPLNFP  312 (332)
Q Consensus       239 ~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~-----~~~~~~  312 (332)
                      ++|+++++++.+   .++.+.++++++ .++|+|||++|+ ..+..++++++++ |+++.+|.... ..     ......
T Consensus       186 ~~Ga~~vi~~~~---~~~~~~v~~~~~-~gvd~vld~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~  259 (329)
T cd08294         186 ELGFDAVFNYKT---VSLEEALKEAAP-DGIDCYFDNVGG-EFSSTVLSHMNDF-GRVAVCGSISTYNDKEPKKGPYVQE  259 (329)
T ss_pred             HcCCCEEEeCCC---ccHHHHHHHHCC-CCcEEEEECCCH-HHHHHHHHhhccC-CEEEEEcchhccCCCCCCcCcccHH
Confidence            999999999887   778888888776 589999999998 6889999999998 99999986432 11     122233


Q ss_pred             hHhc-CcEEEEeeccc
Q 043260          313 AIAL-GRNLKGTIFGG  327 (332)
Q Consensus       313 ~~~~-~~~i~g~~~~~  327 (332)
                      .++. ++++.++....
T Consensus       260 ~~~~~~~~l~~~~~~~  275 (329)
T cd08294         260 TIIFKQLKMEGFIVYR  275 (329)
T ss_pred             HHhhhcceEEEEEhhh
Confidence            3444 88888876554

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=100.00  E-value=5.2e-33  Score=259.14  Aligned_cols=261  Identities=26%  Similarity=0.344  Sum_probs=222.0

Q ss_pred             eeeeEEEecCCC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCC
Q 043260           14 YAAAVVCWGEGE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKEL   89 (332)
Q Consensus        14 ~~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~   89 (332)
                      ||||+++.+.+.  .+.+.+.+.|++.++||+|||.++++|+.|.. ..+..+. ...|.++|||++|+|+++|++++.+
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            699999998775  36677778888899999999999999999988 7665432 3456789999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCC
Q 043260           90 KEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSI  169 (332)
Q Consensus        90 ~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~  169 (332)
                      ++||+|+.                             +..+                  |+|++|+.++.++++++|+++
T Consensus        81 ~~Gd~V~~-----------------------------~~~~------------------g~~~~~~~v~~~~~~~ip~~~  113 (334)
T PTZ00354         81 KEGDRVMA-----------------------------LLPG------------------GGYAEYAVAHKGHVMHIPQGY  113 (334)
T ss_pred             CCCCEEEE-----------------------------ecCC------------------CceeeEEEecHHHcEeCCCCC
Confidence            99999982                             2222                  359999999999999999999


Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      ++++++.++.++.+||+++.+...+++|++|+|+|+ |++|++++++++..|+ +++++.+++++++.++++|++.+++.
T Consensus       114 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~  192 (334)
T PTZ00354        114 TFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILIRY  192 (334)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEec
Confidence            999999999999999999877788999999999997 9999999999999999 77788889999999999999988887


Q ss_pred             CCCCCch-HHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCccc-CChHhHhc-CcEEEEeec
Q 043260          249 DDEPNKS-ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVP-LNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       249 ~~~~~~~-~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~-~~~~~~~~-~~~i~g~~~  325 (332)
                      ..   .+ +.+.+.++++++++|++||++++ ..+..++++++++ |+++.+|........ +++..++. +.++.++..
T Consensus       193 ~~---~~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~l~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (334)
T PTZ00354        193 PD---EEGFAPKVKKLTGEKGVNLVLDCVGG-SYLSETAEVLAVD-GKWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTL  267 (334)
T ss_pred             CC---hhHHHHHHHHHhCCCCceEEEECCch-HHHHHHHHHhccC-CeEEEEecCCCCcccccCHHHHHhhCCEEEeeec
Confidence            65   44 77788888877799999999987 5889999999998 999999976543333 77766665 668888776


Q ss_pred             cc
Q 043260          326 GG  327 (332)
Q Consensus       326 ~~  327 (332)
                      ..
T Consensus       268 ~~  269 (334)
T PTZ00354        268 RS  269 (334)
T ss_pred             cc
Confidence            54

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=2.4e-33  Score=262.29  Aligned_cols=254  Identities=19%  Similarity=0.240  Sum_probs=210.5

Q ss_pred             eeEEEecC---CC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCC
Q 043260           16 AAVVCWGE---GE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKEL   89 (332)
Q Consensus        16 ~a~~~~~~---~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~   89 (332)
                      ||+++..+   ++  .+++.++|.|+|+++||+|||+++++|++|.. +.+..+...+|.++|||++|+|+++|++++.|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF   80 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            57888875   33  38888899999999999999999999999998 76765545678899999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCC
Q 043260           90 KEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSI  169 (332)
Q Consensus        90 ~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~  169 (332)
                      ++||+|+...                          +...                  .|+|++|+.++.+.++++|+++
T Consensus        81 ~~Gd~V~~~~--------------------------~~~~------------------~g~~~~~~~v~~~~~~~ip~~~  116 (336)
T TIGR02817        81 KPGDEVWYAG--------------------------DIDR------------------PGSNAEFHLVDERIVGHKPKSL  116 (336)
T ss_pred             CCCCEEEEcC--------------------------CCCC------------------CCcccceEEEcHHHcccCCCCC
Confidence            9999998321                          0011                  2469999999999999999999


Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCC-----CCEEEEECC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHHcCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEK-----GSSVAVFGL-GAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~-----g~~vlV~G~-g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      ++++++.+++++.|||+++....++++     |++|||+|+ |++|++++|+|+.+ |+ +|++++.++++.+.++++|+
T Consensus       117 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~g~  195 (336)
T TIGR02817       117 SFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLELGA  195 (336)
T ss_pred             CHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHcCC
Confidence            999999999999999999877788877     999999997 99999999999998 98 89999999999999999999


Q ss_pred             CeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEE
Q 043260          243 TDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLK  321 (332)
Q Consensus       243 ~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~  321 (332)
                      ++++++.    .++.+.+.+. .+.++|+|+|++++...+...+++++++ |+++.++..    ..++...+.. ++++.
T Consensus       196 ~~~~~~~----~~~~~~i~~~-~~~~vd~vl~~~~~~~~~~~~~~~l~~~-G~~v~~~~~----~~~~~~~~~~~~~~~~  265 (336)
T TIGR02817       196 HHVIDHS----KPLKAQLEKL-GLEAVSYVFSLTHTDQHFKEIVELLAPQ-GRFALIDDP----AELDISPFKRKSISLH  265 (336)
T ss_pred             CEEEECC----CCHHHHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHhccC-CEEEEEccc----ccccchhhhhcceEEE
Confidence            9998754    3466667664 4458999999987767889999999998 999988533    2344444443 46666


Q ss_pred             Eee
Q 043260          322 GTI  324 (332)
Q Consensus       322 g~~  324 (332)
                      +..
T Consensus       266 ~~~  268 (336)
T TIGR02817       266 WEF  268 (336)
T ss_pred             EEE
Confidence            543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.4e-32  Score=256.33  Aligned_cols=281  Identities=25%  Similarity=0.346  Sum_probs=230.7

Q ss_pred             eeeEEEecCC--CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEG--EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~--~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||++++..+  +.+++++.+.|.+.++|++||+.++++|++|+. ..+.++. ...|.++|||++|+|+++|++++.++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK   80 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence            7899998654  348888888888899999999999999999998 7665543 34688999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+......|+.+.      ...|....+.  |...+                  |+|++|+.++.+.++++|++++
T Consensus        81 ~Gd~V~~~~~~~~~~~~------~~~~~~~~~~--~~~~~------------------g~~~~~~~~~~~~~~~lp~~~~  134 (336)
T cd08276          81 VGDRVVPTFFPNWLDGP------PTAEDEASAL--GGPID------------------GVLAEYVVLPEEGLVRAPDHLS  134 (336)
T ss_pred             CCCEEEEeccccccccc------cccccccccc--ccccC------------------ceeeeEEEecHHHeEECCCCCC
Confidence            99999987766654433      3333221111  22222                  4599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      +.+++.+.+++.+||+++.+...+++|++|+|+|+|++|++++++++..|+ +|++++.++++++.++++|++.+++.+.
T Consensus       135 ~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~  213 (336)
T cd08276         135 FEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRT  213 (336)
T ss_pred             HHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcCCc
Confidence            999999999999999998777889999999999889999999999999999 8999999999999998899999887653


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                        ..++.+.+.+.++++++|++||+++. ..+..++++++++ |+++.+|........++...++. ++++.++..+
T Consensus       214 --~~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (336)
T cd08276         214 --TPDWGEEVLKLTGGRGVDHVVEVGGP-GTLAQSIKAVAPG-GVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVG  286 (336)
T ss_pred             --ccCHHHHHHHHcCCCCCcEEEECCCh-HHHHHHHHhhcCC-CEEEEEccCCCCccCcCHHHHhhcceEEEEEecC
Confidence              14567778888887899999999986 5788999999998 99999997664323455555555 8999988754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=7.9e-33  Score=258.11  Aligned_cols=239  Identities=22%  Similarity=0.276  Sum_probs=196.9

Q ss_pred             eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEeecccCCCC
Q 043260           27 WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRE  105 (332)
Q Consensus        27 l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~  105 (332)
                      +++.+.+.|+|++|||||||.++++|+.|+. ..   +....|.++|+|++|+|+++|+   +|++||||+..       
T Consensus        19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~g~~---~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~-------   85 (325)
T TIGR02825        19 FELKTVELPPLNNGEVLLEALFLSVDPYMRVAAK---RLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS-------   85 (325)
T ss_pred             eEEEeccCCCCCCCcEEEEEEEEecCHHHhcccC---cCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence            8889999999999999999999999997765 32   2233478999999999999874   59999999821       


Q ss_pred             CcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEc----CCCCChhhh-hhcccc
Q 043260          106 CENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKV----DPSIDLSLA-GFLSCG  180 (332)
Q Consensus       106 c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~l----P~~~~~~~a-a~l~~~  180 (332)
                                                                 ++|++|+.++.+.+.++    |++++++++ ++++++
T Consensus        86 -------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~  122 (325)
T TIGR02825        86 -------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMP  122 (325)
T ss_pred             -------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcccH
Confidence                                                       13999999999888888    899999987 678889


Q ss_pred             hhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHH
Q 043260          181 YSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISEL  259 (332)
Q Consensus       181 ~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~  259 (332)
                      +.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++|++.++++++  .+.+.+.
T Consensus       123 ~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~--~~~~~~~  199 (325)
T TIGR02825       123 GLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKT--VKSLEET  199 (325)
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccc--cccHHHH
Confidence            9999999888899999999999997 9999999999999999 8999999999999999999999998875  1245555


Q ss_pred             HHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-C---ccc--CChHhHhc-CcEEEEeeccc
Q 043260          260 VKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-A---KVP--LNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       260 ~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~---~~~--~~~~~~~~-~~~i~g~~~~~  327 (332)
                      +.+.++ .++|+|||++|+. .+..++++++++ |+++.+|.... .   ..+  .....+.+ ++++.++....
T Consensus       200 ~~~~~~-~gvdvv~d~~G~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  271 (325)
T TIGR02825       200 LKKASP-DGYDCYFDNVGGE-FSNTVIGQMKKF-GRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNR  271 (325)
T ss_pred             HHHhCC-CCeEEEEECCCHH-HHHHHHHHhCcC-cEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehh
Confidence            555554 4899999999984 779999999998 99999997542 1   111  12333444 88888876543

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=100.00  E-value=8.4e-33  Score=257.75  Aligned_cols=239  Identities=23%  Similarity=0.304  Sum_probs=212.2

Q ss_pred             eeeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           14 YAAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        14 ~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      +||++++.+++.+  +++++++.|+++++||+||+.++++|++|+. ..+.++...+|.++|||++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK   80 (327)
T ss_pred             CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence            5899999877653  8889999999999999999999999999999 777665555788999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+...                            .                  ..|+|++|+.++.+.++++|++++
T Consensus        81 ~Gd~V~~~~----------------------------~------------------~~g~~~~~v~v~~~~~~~lp~~~~  114 (327)
T PRK10754         81 VGDRVVYAQ----------------------------S------------------ALGAYSSVHNVPADKAAILPDAIS  114 (327)
T ss_pred             CCCEEEECC----------------------------C------------------CCcceeeEEEcCHHHceeCCCCCC
Confidence            999997210                            0                  124599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +++++.++..+.+||.++.+...+++|++|+|+|+ |.+|++++++++.+|+ +|+.++.++++++.++++|++.+++.+
T Consensus       115 ~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~  193 (327)
T PRK10754        115 FEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVINYR  193 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEcCC
Confidence            99999988899999998877788999999999976 9999999999999999 899999999999999999999999887


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .   .++.+.+++.++++++|++||++++ ..+...+++++++ |+++.+|....
T Consensus       194 ~---~~~~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~  243 (327)
T PRK10754        194 E---ENIVERVKEITGGKKVRVVYDSVGK-DTWEASLDCLQRR-GLMVSFGNASG  243 (327)
T ss_pred             C---CcHHHHHHHHcCCCCeEEEEECCcH-HHHHHHHHHhccC-CEEEEEccCCC
Confidence            6   7788888888888899999999998 5788999999998 99999997653

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=100.00  E-value=1.8e-32  Score=254.76  Aligned_cols=262  Identities=19%  Similarity=0.233  Sum_probs=213.4

Q ss_pred             eeeEEEecCCC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||++++++++  +++++++|.|.++++||+||+.++++|++|+. +.|..+. ..+|.++|||++|+|+++  +++.++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~   78 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR   78 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence            79999998885  69999999999999999999999999999998 7776532 346789999999999999  456899


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+..+..                       .|+..+                  |+|++|+.++.+.++++|++++
T Consensus        79 ~Gd~V~~~~~~-----------------------~g~~~~------------------g~~~~~~~v~~~~~~~lp~~~~  117 (325)
T cd05280          79 EGDEVLVTGYD-----------------------LGMNTD------------------GGFAEYVRVPADWVVPLPEGLS  117 (325)
T ss_pred             CCCEEEEcccc-----------------------cCCCCC------------------ceeEEEEEEchhhEEECCCCCC
Confidence            99999853210                       033223                  3599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCC--C-CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKV--E-KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~--~-~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      +++++.+++.+.+||.++....+.  . .+++|+|+|+ |.+|++++++|+.+|+ +|+++++++++++.++++|++.++
T Consensus       118 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  196 (325)
T cd05280         118 LREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASEVL  196 (325)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEE
Confidence            999999999999999987554333  5 3579999998 9999999999999999 799999999999999999999998


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHh-cCcEEEEeec
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIA-LGRNLKGTIF  325 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~-~~~~i~g~~~  325 (332)
                      +...   .  ...+.+...+.++|+|||++++ ..+..++++++++ |+++.+|........+++..++ +++++.++..
T Consensus       197 ~~~~---~--~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (325)
T cd05280         197 DRED---L--LDESKKPLLKARWAGAIDTVGG-DVLANLLKQTKYG-GVVASCGNAAGPELTTTVLPFILRGVSLLGIDS  269 (325)
T ss_pred             cchh---H--HHHHHHHhcCCCccEEEECCch-HHHHHHHHhhcCC-CEEEEEecCCCCccccccchheeeeeEEEEEEe
Confidence            7654   2  2223344444579999999998 5889999999998 9999999875422356666654 4889888765


Q ss_pred             cc
Q 043260          326 GG  327 (332)
Q Consensus       326 ~~  327 (332)
                      ..
T Consensus       270 ~~  271 (325)
T cd05280         270 VN  271 (325)
T ss_pred             ec
Confidence            43

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=100.00  E-value=2.2e-32  Score=253.98  Aligned_cols=261  Identities=22%  Similarity=0.238  Sum_probs=219.6

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC---CCCCCcccccceeEEEEEeCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP---LPLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      |||+++++++.+  +++.+.+.|.+.++||+||+.++++|++|+. ..|..+   ....|.++|||++|+|+++|++++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            689999876543  6677777777889999999999999999998 766543   2456788999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      +++||+|+....                           ..                  .|+|++|+.++.+.++++|++
T Consensus        81 ~~~Gd~V~~~~~---------------------------~~------------------~g~~~~~~~v~~~~~~~lp~~  115 (324)
T cd08244          81 AWLGRRVVAHTG---------------------------RA------------------GGGYAELAVADVDSLHPVPDG  115 (324)
T ss_pred             CCCCCEEEEccC---------------------------CC------------------CceeeEEEEEchHHeEeCCCC
Confidence            999999984321                           01                  246999999999999999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN  247 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~  247 (332)
                      +++++++.+++++.||| ++.+..+++++++|+|+|+ |.+|++++++|+..|+ +|+++++++++.+.++++|++.+++
T Consensus       116 ~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  193 (324)
T cd08244         116 LDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVAVD  193 (324)
T ss_pred             CCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEe
Confidence            99999999999999996 4557788999999999996 9999999999999999 8999999999999999999999888


Q ss_pred             CCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      ..+   .++.+.+.++++++++|+++|++|+. ....++++++++ |+++.+|.......+++...++. ++++.++...
T Consensus       194 ~~~---~~~~~~~~~~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (324)
T cd08244         194 YTR---PDWPDQVREALGGGGVTVVLDGVGGA-IGRAALALLAPG-GRFLTYGWASGEWTALDEDDARRRGVTVVGLLGV  268 (324)
T ss_pred             cCC---ccHHHHHHHHcCCCCceEEEECCChH-hHHHHHHHhccC-cEEEEEecCCCCCCccCHHHHhhCCcEEEEeecc
Confidence            776   67778888888878999999999985 668999999998 99999998765334666544444 8888887654


Q ss_pred             c
Q 043260          327 G  327 (332)
Q Consensus       327 ~  327 (332)
                      .
T Consensus       269 ~  269 (324)
T cd08244         269 Q  269 (324)
T ss_pred             c
Confidence            3

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=100.00  E-value=5.3e-32  Score=251.98  Aligned_cols=260  Identities=21%  Similarity=0.214  Sum_probs=209.9

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCC-CCCCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~-~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||+++.+++++  +++++++.|.+.++||+||+.++++|++|.. ..+. .....+|.++|||++|+|++.|  +++++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~   78 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK   78 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence            789999988763  7889999999999999999999999999987 5432 1123468899999999999954  57799


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+..+..                       .|...+                  |+|+||+.++.+.++++|++++
T Consensus        79 ~Gd~V~~~~~~-----------------------~~~~~~------------------g~~~~~~~v~~~~~~~~p~~~~  117 (326)
T cd08289          79 PGDEVIVTSYD-----------------------LGVSHH------------------GGYSEYARVPAEWVVPLPKGLT  117 (326)
T ss_pred             CCCEEEEcccc-----------------------cCCCCC------------------CcceeEEEEcHHHeEECCCCCC
Confidence            99999854210                       022222                  4599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhh--C-CCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEF--K-VEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~--~-~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      +++++.+++++.||+.++....  . ...+++|||+|+ |.+|++++++|+.+|+ +|+++++++++++.++++|++.++
T Consensus       118 ~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~  196 (326)
T cd08289         118 LKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKEVI  196 (326)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCEEE
Confidence            9999999999999998775432  2 345789999998 9999999999999999 899999999999999999999998


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      +.++   . ..+.+.++. +.++|+|||++|+ ..+..++++++++ |+++.+|.......++++..++. ++++.++..
T Consensus       197 ~~~~---~-~~~~~~~~~-~~~~d~vld~~g~-~~~~~~~~~l~~~-G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (326)
T cd08289         197 PREE---L-QEESIKPLE-KQRWAGAVDPVGG-KTLAYLLSTLQYG-GSVAVSGLTGGGEVETTVFPFILRGVNLLGIDS  269 (326)
T ss_pred             cchh---H-HHHHHHhhc-cCCcCEEEECCcH-HHHHHHHHHhhcC-CEEEEEeecCCCCCCcchhhhhhccceEEEEEe
Confidence            8764   3 244555554 4589999999998 5889999999998 99999998754334445555644 889988753

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=100.00  E-value=1.3e-31  Score=249.85  Aligned_cols=256  Identities=22%  Similarity=0.261  Sum_probs=215.5

Q ss_pred             eeeeEEEecCCC----CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCC
Q 043260           14 YAAAVVCWGEGE----PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        14 ~~~a~~~~~~~~----~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      .|||+++.+++.    ++++++.+.|.+.++|++|||.++++|++|+. ..+.++. ..+|.++|||++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~   80 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT   80 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence            489999987664    58899999999999999999999999999998 7765542 46788999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      .+++||+|+..                                                ..|+|++|+.++.+.++++|+
T Consensus        81 ~~~~Gd~V~~~------------------------------------------------~~g~~~s~~~v~~~~~~~ip~  112 (329)
T cd08250          81 DFKVGDAVATM------------------------------------------------SFGAFAEYQVVPARHAVPVPE  112 (329)
T ss_pred             CCCCCCEEEEe------------------------------------------------cCcceeEEEEechHHeEECCC
Confidence            99999999832                                                124599999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      +  +.+++.++.++.+||+++.+..++++|++++|+|+ |.+|++++++++..|. +|+++++++++.+.++++|++.++
T Consensus       113 ~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~  189 (329)
T cd08250         113 L--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDRPI  189 (329)
T ss_pred             C--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCceEE
Confidence            7  35677788899999999877788999999999997 9999999999999999 899999999999999999999888


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCC----------cccCChHhHhc
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEA----------KVPLNFPAIAL  316 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~----------~~~~~~~~~~~  316 (332)
                      +...   .++.+.+.+..+ .++|+|||++|+ ..+..++++++++ |+++.+|.....          ...++...+..
T Consensus       190 ~~~~---~~~~~~~~~~~~-~~vd~v~~~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (329)
T cd08250         190 NYKT---EDLGEVLKKEYP-KGVDVVYESVGG-EMFDTCVDNLALK-GRLIVIGFISGYQSGTGPSPVKGATLPPKLLAK  263 (329)
T ss_pred             eCCC---ccHHHHHHHhcC-CCCeEEEECCcH-HHHHHHHHHhccC-CeEEEEecccCCcccCcccccccccccHHHhhc
Confidence            7765   666667766655 589999999997 5889999999998 999999976531          12333333444


Q ss_pred             CcEEEEeecc
Q 043260          317 GRNLKGTIFG  326 (332)
Q Consensus       317 ~~~i~g~~~~  326 (332)
                      ++++.++...
T Consensus       264 ~~~~~~~~~~  273 (329)
T cd08250         264 SASVRGFFLP  273 (329)
T ss_pred             CceEEEEEhH
Confidence            8888887654

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=100.00  E-value=5.4e-32  Score=254.06  Aligned_cols=243  Identities=25%  Similarity=0.368  Sum_probs=206.8

Q ss_pred             eeeEEEecCC-CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEG-EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||+++++++ ..+++++.+.|+|+++||+||++++++|++|+. ..+.. ....|.++|||++|+|+++|++++.+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG   79 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence            7899999884 348899999999999999999999999999998 64543 12357789999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      |+|+......|+                     +...                  .|+|++|+.++.+.++++|++++++
T Consensus        80 d~V~~~~~~~~~---------------------~~~~------------------~g~~~~~~~v~~~~~~~ip~~~~~~  120 (339)
T cd08249          80 DRVAGFVHGGNP---------------------NDPR------------------NGAFQEYVVADADLTAKIPDNISFE  120 (339)
T ss_pred             CEEEEEeccccC---------------------CCCC------------------CCcccceEEechhheEECCCCCCHH
Confidence            999865432111                     1111                  2469999999999999999999999


Q ss_pred             hhhhcccchhhhHHHHHHhhCC----------CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKV----------EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG  241 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~----------~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg  241 (332)
                      +++.+++++.|||+++.+..++          .++++|+|+|+ |.+|++++++++.+|+ +|+.+. ++++++.++++|
T Consensus       121 ~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~~g  198 (339)
T cd08249         121 EAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKSLG  198 (339)
T ss_pred             HceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHhcC
Confidence            9999999999999988665544          78999999998 9999999999999999 888877 568888889999


Q ss_pred             CCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhcc--CCcEEEEEcCCCC
Q 043260          242 MTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKL--GKGKVMAIGAANE  304 (332)
Q Consensus       242 a~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~--~~G~~v~~G~~~~  304 (332)
                      ++++++...   .++.+.++++++ .++|+|||++|++..+..+++++++  + |+++.+|....
T Consensus       199 ~~~v~~~~~---~~~~~~l~~~~~-~~~d~vl~~~g~~~~~~~~~~~l~~~~~-g~~v~~g~~~~  258 (339)
T cd08249         199 ADAVFDYHD---PDVVEDIRAATG-GKLRYALDCISTPESAQLCAEALGRSGG-GKLVSLLPVPE  258 (339)
T ss_pred             CCEEEECCC---chHHHHHHHhcC-CCeeEEEEeeccchHHHHHHHHHhccCC-CEEEEecCCCc
Confidence            999998876   778888888776 4899999999986688999999999  8 99999997653

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=100.00  E-value=3.3e-31  Score=246.50  Aligned_cols=259  Identities=23%  Similarity=0.242  Sum_probs=209.5

Q ss_pred             eeEEEecCCC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           16 AAVVCWGEGE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        16 ~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      ||+++...+.  .++++++|.|.+.++||+||++++++|++|+. +.|.++. ..+|.++|||++|+|++  ++++.|++
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~   78 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE   78 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence            6788887766  36899999999999999999999999999998 7776532 35688999999999998  56778999


Q ss_pred             CCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           92 GDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        92 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      ||+|+..+...                       |...+                  |+|++|+.++.+.++++|+++++
T Consensus        79 Gd~V~~~~~~~-----------------------~~~~~------------------g~~~~~~~~~~~~~~~iP~~~~~  117 (323)
T TIGR02823        79 GDEVIVTGYGL-----------------------GVSHD------------------GGYSQYARVPADWLVPLPEGLSL  117 (323)
T ss_pred             CCEEEEccCCC-----------------------CCCCC------------------ccceEEEEEchhheEECCCCCCH
Confidence            99998542100                       11122                  45999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHh--hCCCCCC-EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeC
Q 043260          172 SLAGFLSCGYSSGFGAAWKE--FKVEKGS-SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN  247 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~--~~~~~g~-~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~  247 (332)
                      ++++.+++.+.+|+.++...  .++.+|+ +|+|+|+ |.+|++++++|+.+|+ ++++++.++++++.++++|++.+++
T Consensus       118 ~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~  196 (323)
T TIGR02823       118 REAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEVID  196 (323)
T ss_pred             HHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEEEc
Confidence            99999998999998776433  3478898 9999998 9999999999999999 7888888888889999999999888


Q ss_pred             CCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhH-hcCcEEEEeecc
Q 043260          248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI-ALGRNLKGTIFG  326 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~-~~~~~i~g~~~~  326 (332)
                      .++   .+.  .++.+..+ ++|+++|++|+. .+..++++++++ |+++.+|........++...+ ..++++.++...
T Consensus       197 ~~~---~~~--~~~~~~~~-~~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (323)
T TIGR02823       197 RED---LSP--PGKPLEKE-RWAGAVDTVGGH-TLANVLAQLKYG-GAVAACGLAGGPDLPTTVLPFILRGVSLLGIDSV  268 (323)
T ss_pred             ccc---HHH--HHHHhcCC-CceEEEECccHH-HHHHHHHHhCCC-CEEEEEcccCCCCccccHHHHhhcceEEEEEecc
Confidence            754   332  45555555 599999999985 788999999998 999999987543445555555 448899887543

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=100.00  E-value=2.7e-31  Score=246.62  Aligned_cols=249  Identities=24%  Similarity=0.342  Sum_probs=216.1

Q ss_pred             eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCCCCCEEEeecccCCC
Q 043260           27 WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECR  104 (332)
Q Consensus        27 l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~  104 (332)
                      +++++.+.|++.++||+||++++++|+.|.. +.+..+. ..+|.++|||++|+|+++|++++.+++||+|+..+.    
T Consensus        14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----   89 (323)
T cd05282          14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG----   89 (323)
T ss_pred             EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence            6677888888999999999999999999998 6665432 346789999999999999999999999999984320    


Q ss_pred             CCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhhhhhcccchhhh
Q 043260          105 ECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSG  184 (332)
Q Consensus       105 ~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta  184 (332)
                                                                 .|+|++|+.++.+.++++|+++++.+++.+++.+.+|
T Consensus        90 -------------------------------------------~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta  126 (323)
T cd05282          90 -------------------------------------------EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTA  126 (323)
T ss_pred             -------------------------------------------CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHH
Confidence                                                       1359999999999999999999999999998899999


Q ss_pred             HHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHh
Q 043260          185 FGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       185 ~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~  263 (332)
                      |+++.+...+.+|++|||+|+ |.+|++++++|+.+|+ +++++..++++++.++++|++++++++.   .++.+.+.++
T Consensus       127 ~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~  202 (323)
T cd05282         127 WLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP---EDLAQRVKEA  202 (323)
T ss_pred             HHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc---hhHHHHHHHH
Confidence            999877778899999999988 9999999999999999 8999999999999999999999998876   6788888888


Q ss_pred             cCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHh-cCcEEEEeecccc
Q 043260          264 THGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIA-LGRNLKGTIFGGI  328 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~-~~~~i~g~~~~~~  328 (332)
                      ++++++|+|||++|+. .....+++++++ |+++.+|........++...+. .++++.++....+
T Consensus       203 ~~~~~~d~vl~~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (323)
T cd05282         203 TGGAGARLALDAVGGE-SATRLARSLRPG-GTLVNYGLLSGEPVPFPRSVFIFKDITVRGFWLRQW  266 (323)
T ss_pred             hcCCCceEEEECCCCH-HHHHHHHhhCCC-CEEEEEccCCCCCCCCCHHHHhhcCceEEEEEehHh
Confidence            8888999999999995 667889999998 9999999775434567777666 5899999877654

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.7e-31  Score=243.25  Aligned_cols=251  Identities=26%  Similarity=0.368  Sum_probs=208.5

Q ss_pred             ecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-c-cCCCCC--CCCCcccccceeEEEEEeCCCCCCCCCCCEEE
Q 043260           21 WGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-S-SKGFPL--PLFPRVLGHEGVGMVESIGDEVKELKEGDIVI   96 (332)
Q Consensus        21 ~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~-~g~~~~--~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV~   96 (332)
                      ++.+. +++++++.|++.++||+||+.++++|++|+. + .+..+.  ...|.++|||++|+|+++|++++.+++||+|+
T Consensus         2 ~~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   80 (312)
T cd08269           2 TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA   80 (312)
T ss_pred             CCCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence            34444 9999999999999999999999999999998 6 664322  22478999999999999999999999999998


Q ss_pred             eecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhhhhh
Q 043260           97 PTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF  176 (332)
Q Consensus        97 ~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa~  176 (332)
                      ..+                                                .|+|++|+.++.+.++++|+++  ..++.
T Consensus        81 ~~~------------------------------------------------~g~~~~~~~v~~~~~~~lP~~~--~~~~~  110 (312)
T cd08269          81 GLS------------------------------------------------GGAFAEYDLADADHAVPLPSLL--DGQAF  110 (312)
T ss_pred             Eec------------------------------------------------CCcceeeEEEchhheEECCCch--hhhHH
Confidence            431                                                2459999999999999999998  23333


Q ss_pred             cccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchH
Q 043260          177 LSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSI  256 (332)
Q Consensus       177 l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~  256 (332)
                      +..++.++++++. ..+++++++++|+|+|.+|++++++|+..|+..|+++.+++++.++++++|++.+++.+.   .++
T Consensus       111 ~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~  186 (312)
T cd08269         111 PGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS---EAI  186 (312)
T ss_pred             hhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC---cCH
Confidence            3367889999874 788999999999988999999999999999933999999999999999999999988766   778


Q ss_pred             HHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeeccc
Q 043260          257 SELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       257 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      .+.+.+++++.++|++||+.|....+..++++++++ |+++.+|.......++++..+.+ ++.+.++...+
T Consensus       187 ~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (312)
T cd08269         187 VERVRELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVERD  257 (312)
T ss_pred             HHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCCCCCcccCHHHHhhcCCEEEEecccC
Confidence            888888888889999999998877889999999998 99999997644445666555454 77887775444

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=100.00  E-value=5.2e-31  Score=243.10  Aligned_cols=260  Identities=26%  Similarity=0.364  Sum_probs=222.0

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      ||++++.+.+.+  +++.+.+.|.+.++||+||+.++++|++|+. ..+.++. ..+|.++|||++|+|+++|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK   80 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence            799999875543  7777888888889999999999999999998 7665432 45678999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+.                             +..+                  |+|++|+.++.+.++++|++++
T Consensus        81 ~Gd~V~~-----------------------------~~~~------------------g~~~~~~~~~~~~~~~~p~~~~  113 (323)
T cd05276          81 VGDRVCA-----------------------------LLAG------------------GGYAEYVVVPAGQLLPVPEGLS  113 (323)
T ss_pred             CCCEEEE-----------------------------ecCC------------------CceeEEEEcCHHHhccCCCCCC
Confidence            9999983                             2222                  3599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +.+++.++.++.++|+++.+...+.++++++|+|+ |++|++++++++..|+ +|+++++++++++.++++|++.+++..
T Consensus       114 ~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~  192 (323)
T cd05276         114 LVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAINYR  192 (323)
T ss_pred             HHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCC
Confidence            99999999999999999877788999999999997 9999999999999999 899999999999988999998888877


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHh-cCcEEEEeeccc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIA-LGRNLKGTIFGG  327 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~-~~~~i~g~~~~~  327 (332)
                      .   .++.+.+.+.+.+.++|++|+++|+. .+...++++.++ |+++.+|..+.....+++..++ +++++.++....
T Consensus       193 ~---~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (323)
T cd05276         193 T---EDFAEEVKEATGGRGVDVILDMVGGD-YLARNLRALAPD-GRLVLIGLLGGAKAELDLAPLLRKRLTLTGSTLRS  266 (323)
T ss_pred             c---hhHHHHHHHHhCCCCeEEEEECCchH-HHHHHHHhhccC-CEEEEEecCCCCCCCCchHHHHHhCCeEEEeeccc
Confidence            6   67777787777777899999999985 578899999998 9999999766533466666664 489999887655

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=100.00  E-value=5.8e-31  Score=246.00  Aligned_cols=258  Identities=20%  Similarity=0.243  Sum_probs=214.5

Q ss_pred             eeeEEEecCCCC-----eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCC
Q 043260           15 AAAVVCWGEGEP-----WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        15 ~~a~~~~~~~~~-----l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      |||++++++++.     +..++.+.|++.++||+||+.++++|++|+. +.+..+...+|.++|||++|+|+++|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~   80 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL   80 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence            689999988763     5566778888899999999999999999998 7776554456778999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      +++||+|+....                          ...+                  |+|++|+.++.+.++++|++
T Consensus        81 ~~~Gd~V~~~~~--------------------------~~~~------------------g~~~~~~~v~~~~~~~ip~~  116 (336)
T cd08252          81 FKVGDEVYYAGD--------------------------ITRP------------------GSNAEYQLVDERIVGHKPKS  116 (336)
T ss_pred             CCCCCEEEEcCC--------------------------CCCC------------------ccceEEEEEchHHeeeCCCC
Confidence            999999984210                          0112                  45999999999999999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCC-----CCEEEEECC-ChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHHcC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEK-----GSSVAVFGL-GAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEAFG  241 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~-----g~~vlV~G~-g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~lg  241 (332)
                      +++++++.+++.+.+||+++.+...+++     |++|+|+|+ |++|++++++++.+| . +|++++.++++++.++++|
T Consensus       117 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~~g  195 (336)
T cd08252         117 LSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKELG  195 (336)
T ss_pred             CCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHhcC
Confidence            9999999999999999998877788877     999999986 999999999999999 7 9999999999999999999


Q ss_pred             CCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHh-cCcEE
Q 043260          242 MTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIA-LGRNL  320 (332)
Q Consensus       242 a~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~-~~~~i  320 (332)
                      ++.+++...    ++.+.+... .+.++|++||++++...+..++++++++ |+++.+|...   ..++...+. .+.++
T Consensus       196 ~~~~~~~~~----~~~~~i~~~-~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~---~~~~~~~~~~~~~~~  266 (336)
T cd08252         196 ADHVINHHQ----DLAEQLEAL-GIEPVDYIFCLTDTDQHWDAMAELIAPQ-GHICLIVDPQ---EPLDLGPLKSKSASF  266 (336)
T ss_pred             CcEEEeCCc----cHHHHHHhh-CCCCCCEEEEccCcHHHHHHHHHHhcCC-CEEEEecCCC---CcccchhhhcccceE
Confidence            999987652    455556544 3458999999999767889999999998 9999998753   344555553 47888


Q ss_pred             EEeecc
Q 043260          321 KGTIFG  326 (332)
Q Consensus       321 ~g~~~~  326 (332)
                      .++.+.
T Consensus       267 ~~~~~~  272 (336)
T cd08252         267 HWEFMF  272 (336)
T ss_pred             EEEEee
Confidence            876654

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=1.1e-30  Score=241.80  Aligned_cols=259  Identities=23%  Similarity=0.329  Sum_probs=211.2

Q ss_pred             eeeEEEecCCC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           15 AAAVVCWGEGE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        15 ~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      ||++++.+.+.  .+++.+.+.|.++++||+||+.++++|++|+. ..+..+....|.++|||++|+|+++|+  ..+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~   78 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP   78 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence            68888887653  36677788888899999999999999999999 777655556688999999999999995  57999


Q ss_pred             CCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           92 GDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        92 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      ||+|+......                       +...                  .|+|++|+.++...++++|+++++
T Consensus        79 Gd~V~~~~~~~-----------------------~~~~------------------~g~~~~~~~~~~~~~~~ip~~~~~  117 (320)
T cd08243          79 GQRVATAMGGM-----------------------GRTF------------------DGSYAEYTLVPNEQVYAIDSDLSW  117 (320)
T ss_pred             CCEEEEecCCC-----------------------CCCC------------------CcccceEEEcCHHHcEeCCCCCCH
Confidence            99998542100                       1111                  246999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      ++++.+++++.+||+++.+...+++|++|||+|+ |.+|++++++|+..|+ +|+.++.++++.+.++++|++.+++. .
T Consensus       118 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~-~  195 (320)
T cd08243         118 AELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID-D  195 (320)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec-C
Confidence            9999999999999999877778999999999998 9999999999999999 89999999999999999999888754 3


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC--CcccCChHhHh---cCcEEEEeec
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE--AKVPLNFPAIA---LGRNLKGTIF  325 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~--~~~~~~~~~~~---~~~~i~g~~~  325 (332)
                         .++.+.+.++  ++++|+++|++++ ..+..++++++++ |+++.+|....  ...+.....++   .++++.++..
T Consensus       196 ---~~~~~~i~~~--~~~~d~vl~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (320)
T cd08243         196 ---GAIAEQLRAA--PGGFDKVLELVGT-ATLKDSLRHLRPG-GIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSS  268 (320)
T ss_pred             ---ccHHHHHHHh--CCCceEEEECCCh-HHHHHHHHHhccC-CEEEEEccCCCCcccCCcchhhhhhhccceEEEecch
Confidence               4666777777  5589999999998 5889999999998 99999997543  11122222222   3777777654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=100.00  E-value=2e-30  Score=239.58  Aligned_cols=263  Identities=24%  Similarity=0.379  Sum_probs=220.9

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC-CCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP-LPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~-~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      ||+++++.++.+  +.+.+++.|++.+++|+|++.++++|++|+. +.+..+ ....|.++|||++|+|+++|+++..|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   80 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK   80 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence            688888876543  7888999999999999999999999999998 766543 245788999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+..+.                         |..                 ...|++++|+.++.+.++++|++++
T Consensus        81 ~Gd~v~~~~~-------------------------~~~-----------------~~~g~~~~~~~~~~~~~~~ip~~~~  118 (325)
T cd08253          81 VGDRVWLTNL-------------------------GWG-----------------RRQGTAAEYVVVPADQLVPLPDGVS  118 (325)
T ss_pred             CCCEEEEecc-------------------------ccC-----------------CCCcceeeEEEecHHHcEeCCCCCC
Confidence            9999985431                         100                 0124599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +++++.+++++.+||+++....++.+|++++|+|+ |++|++++++++..|. +|+++++++++.+.++++|++.+++..
T Consensus       119 ~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~  197 (325)
T cd08253         119 FEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFNYR  197 (325)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCC
Confidence            99999999999999999877789999999999997 9999999999999998 899999999999999999999888876


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      .   .++.+.+.+++.++++|++++++++. .+...+++++++ |+++.+|... ...++++..++. +.++.+....
T Consensus       198 ~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~-g~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  269 (325)
T cd08253         198 A---EDLADRILAATAGQGVDVIIEVLANV-NLAKDLDVLAPG-GRIVVYGSGG-LRGTIPINPLMAKEASIRGVLLY  269 (325)
T ss_pred             C---cCHHHHHHHHcCCCceEEEEECCchH-HHHHHHHhhCCC-CEEEEEeecC-CcCCCChhHHHhcCceEEeeehh
Confidence            6   67777788777777899999999984 678889999998 9999999765 334555555334 7778776544

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=3e-30  Score=237.86  Aligned_cols=246  Identities=20%  Similarity=0.256  Sum_probs=204.4

Q ss_pred             eeeEEEecCC-CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEG-EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      ||++++++.+ ..+++++.+.|.+.++||+||+.++++|+.|.. ..+.    ..|.++|||++|+|+++|+++..|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~G   76 (305)
T cd08270           1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAVG   76 (305)
T ss_pred             CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCCC
Confidence            6899998754 226677888888999999999999999999998 5421    235789999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      |+|+.                             +..+                  |+|++|+.++.++++++|++++++
T Consensus        77 d~V~~-----------------------------~~~~------------------g~~~~~~~v~~~~~~~ip~~~~~~  109 (305)
T cd08270          77 ARVVG-----------------------------LGAM------------------GAWAELVAVPTGWLAVLPDGVSFA  109 (305)
T ss_pred             CEEEE-----------------------------ecCC------------------cceeeEEEEchHHeEECCCCCCHH
Confidence            99983                             2212                  359999999999999999999999


Q ss_pred             hhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      +++.+++.+.|||+++.+.... +|++|+|+|+ |++|++++++++..|+ +|+.+++++++++.++++|++.+++... 
T Consensus       110 ~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~-  186 (305)
T cd08270         110 QAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVVGGS-  186 (305)
T ss_pred             HHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEeccc-
Confidence            9999999999999988655544 6999999998 9999999999999998 8999999999999999999876654321 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc---CcEEEEeeccc
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL---GRNLKGTIFGG  327 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~---~~~i~g~~~~~  327 (332)
                                ++.+ .++|+++|++|+. .+..++++++++ |+++.+|........++...+..   +.++.++....
T Consensus       187 ----------~~~~-~~~d~vl~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (305)
T cd08270         187 ----------ELSG-APVDLVVDSVGGP-QLARALELLAPG-GTVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTFFLYD  252 (305)
T ss_pred             ----------cccC-CCceEEEECCCcH-HHHHHHHHhcCC-CEEEEEeccCCCcccccHHHHhcccccceEEEEEccC
Confidence                      1222 3799999999985 789999999998 99999997654445667666655   88888887653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.98  E-value=7.3e-30  Score=235.14  Aligned_cols=256  Identities=28%  Similarity=0.373  Sum_probs=215.4

Q ss_pred             eeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           16 AAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        16 ~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      ||+.+...+..  +.+.+.+.|.+.++||+|||.++++|++|+. ..+..+. .+|.++|||++|+|+.+|++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G   79 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG   79 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence            46666655442  6667777777889999999999999999998 7665443 567789999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      |+|+...                             .                  .|+|++|+.++.+.++++|+++++.
T Consensus        80 ~~V~~~~-----------------------------~------------------~g~~~~~~~~~~~~~~~~p~~~~~~  112 (320)
T cd05286          80 DRVAYAG-----------------------------P------------------PGAYAEYRVVPASRLVKLPDGISDE  112 (320)
T ss_pred             CEEEEec-----------------------------C------------------CCceeEEEEecHHHceeCCCCCCHH
Confidence            9998321                             0                  2359999999999999999999999


Q ss_pred             hhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      +++.++..+.++++++.+..++.+|++|+|+|+ |++|++++++++.+|+ +|++++.++++.+.++++|++.+++... 
T Consensus       113 ~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~-  190 (320)
T cd05286         113 TAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYRD-  190 (320)
T ss_pred             HHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCCc-
Confidence            999998999999999878888999999999996 9999999999999999 8999999999999999999999988766 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhH-hcCcEEEEeec
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI-ALGRNLKGTIF  325 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~-~~~~~i~g~~~  325 (332)
                        .++.+.+.+++.+.++|++|+++++ ..+..++++++++ |+++.+|........++...+ .+++++.++..
T Consensus       191 --~~~~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (320)
T cd05286         191 --EDFVERVREITGGRGVDVVYDGVGK-DTFEGSLDSLRPR-GTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSL  261 (320)
T ss_pred             --hhHHHHHHHHcCCCCeeEEEECCCc-HhHHHHHHhhccC-cEEEEEecCCCCCCccCHHHHHhcCcEEEEEeh
Confidence              6777888888877789999999998 5888999999998 999999976543344555555 33777776543

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.97  E-value=3e-30  Score=242.64  Aligned_cols=235  Identities=24%  Similarity=0.211  Sum_probs=198.3

Q ss_pred             eeeEEEecCCCC---eEEEEEecCCC-CCCeEEEEEeeeecCccccc-ccCCCC---------------CCCCCcccccc
Q 043260           15 AAAVVCWGEGEP---WKVEEIQVEPP-KATEVRFKMLYASICHTDVL-SSKGFP---------------LPLFPRVLGHE   74 (332)
Q Consensus        15 ~~a~~~~~~~~~---l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~-~~g~~~---------------~~~~p~v~G~e   74 (332)
                      |||+++++++++   +++++.+.|+| .++||+|||+++++|++|+. +.+...               ...+|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            789999887765   88999999999 49999999999999999998 666311               23568899999


Q ss_pred             eeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceee
Q 043260           75 GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEY  154 (332)
Q Consensus        75 ~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~  154 (332)
                      ++|+|+++|++++++++||+|+..+.                          +.                  ..|+|++|
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~--------------------------~~------------------~~g~~~~~  116 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVP--------------------------PW------------------SQGTHAEY  116 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecC--------------------------CC------------------CCccceeE
Confidence            99999999999999999999984321                          00                  12469999


Q ss_pred             EEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCC----CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          155 MVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEK----GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       155 ~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~----g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      +.++.+.++++|+++++++++.+++++.+||+++.+...+.+    |++|+|+|+ |++|++++++++.+|+ +|+++.+
T Consensus       117 ~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~  195 (350)
T cd08248         117 VVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTTCS  195 (350)
T ss_pred             EEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence            999999999999999999999999999999998877666654    999999996 9999999999999999 7888775


Q ss_pred             CcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          230 NPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       230 ~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      + ++.+.++++|.+.+++...   .++.+.+..   ..++|++||++|.. .+..++++++++ |+++.+|...
T Consensus       196 ~-~~~~~~~~~g~~~~~~~~~---~~~~~~l~~---~~~vd~vi~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~  260 (350)
T cd08248         196 T-DAIPLVKSLGADDVIDYNN---EDFEEELTE---RGKFDVILDTVGGD-TEKWALKLLKKG-GTYVTLVSPL  260 (350)
T ss_pred             c-chHHHHHHhCCceEEECCC---hhHHHHHHh---cCCCCEEEECCChH-HHHHHHHHhccC-CEEEEecCCc
Confidence            4 6778889999988888765   455554443   35799999999985 889999999998 9999998653

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.97  E-value=1.3e-29  Score=235.74  Aligned_cols=259  Identities=20%  Similarity=0.219  Sum_probs=207.4

Q ss_pred             eeeEEEecCCC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||+++++++.  .+++++.|.|+|+++||+||+.++++|++|.. +.+..+. ..+|.++|||++|+|++  +++++++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   78 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK   78 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence            78999998774  48899999999999999999999999999998 7665432 34678899999999999  7778899


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+......                       |...                  .|+|++|+.++.+.++++|++++
T Consensus        79 ~Gd~V~~~~~~~-----------------------~~~~------------------~g~~~~~~~v~~~~~~~lp~~~~  117 (324)
T cd08288          79 PGDRVVLTGWGV-----------------------GERH------------------WGGYAQRARVKADWLVPLPEGLS  117 (324)
T ss_pred             CCCEEEECCccC-----------------------CCCC------------------CCcceeEEEEchHHeeeCCCCCC
Confidence            999998531100                       0001                  24699999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHH--HhhCCC-CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          171 LSLAGFLSCGYSSGFGAAW--KEFKVE-KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~--~~~~~~-~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      +++++.++.++.+++.++.  +..... ++++|+|+|+ |++|++++|+|+.+|+ +|++++.++++++.++++|+++++
T Consensus       118 ~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~  196 (324)
T cd08288         118 ARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASEII  196 (324)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCEEE
Confidence            9999999989888887653  123445 6789999998 9999999999999999 899998999999999999999998


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhH-hcCcEEEEeec
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI-ALGRNLKGTIF  325 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~-~~~~~i~g~~~  325 (332)
                      ++++   .+  ..+.+++.+ ++|.++|++++ ..+...+..++.+ |+++.+|.......++++..+ ..++++.|+..
T Consensus       197 ~~~~---~~--~~~~~~~~~-~~~~~~d~~~~-~~~~~~~~~~~~~-g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (324)
T cd08288         197 DRAE---LS--EPGRPLQKE-RWAGAVDTVGG-HTLANVLAQTRYG-GAVAACGLAGGADLPTTVMPFILRGVTLLGIDS  268 (324)
T ss_pred             Ecch---hh--HhhhhhccC-cccEEEECCcH-HHHHHHHHHhcCC-CEEEEEEecCCCCCCcchhhhhccccEEEEEEe
Confidence            8754   22  245555554 58999999998 4677888899987 999999976432334555555 34889998753

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=2.1e-29  Score=233.29  Aligned_cols=259  Identities=24%  Similarity=0.320  Sum_probs=214.9

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC-CCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP-LPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~-~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||+++++.+.+  +++++.+.|.+.++||+|++.++++|++|+. ..+... ....|.++|||++|+|+.+|+++..++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR   80 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence            689999887754  7788888888899999999999999999998 666543 233578899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+....                         |+.  +               ..|+|++|+.++.+.++++|++++
T Consensus        81 ~Gd~V~~~~~-------------------------~~~--~---------------~~g~~~~~~~v~~~~~~~~p~~~~  118 (326)
T cd08272          81 VGDEVYGCAG-------------------------GLG--G---------------LQGSLAEYAVVDARLLALKPANLS  118 (326)
T ss_pred             CCCEEEEccC-------------------------CcC--C---------------CCCceeEEEEecHHHcccCCCCCC
Confidence            9999984321                         110  0               124699999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +.+++.++..+.+||+++.+..++++|++++|+|+ |.+|++++++++..|+ +|+.++++ ++.+.++++|++.+++..
T Consensus       119 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~  196 (326)
T cd08272         119 MREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIYYR  196 (326)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEecc
Confidence            99999999999999998878889999999999986 9999999999999999 89998888 888888999998888876


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhcCcEEEEeecc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFG  326 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~~~~i~g~~~~  326 (332)
                      .   . +.+.+.+++++.++|+++|++++ ..+..++++++++ |+++.+|...  ..++... ...++++.++...
T Consensus       197 ~---~-~~~~~~~~~~~~~~d~v~~~~~~-~~~~~~~~~l~~~-g~~v~~~~~~--~~~~~~~-~~~~~~~~~~~~~  264 (326)
T cd08272         197 E---T-VVEYVAEHTGGRGFDVVFDTVGG-ETLDASFEAVALY-GRVVSILGGA--THDLAPL-SFRNATYSGVFTL  264 (326)
T ss_pred             h---h-HHHHHHHhcCCCCCcEEEECCCh-HHHHHHHHHhccC-CEEEEEecCC--ccchhhH-hhhcceEEEEEcc
Confidence            5   5 77788888888899999999998 4788899999998 9999998663  1222222 1337777776643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.97  E-value=3.4e-29  Score=231.66  Aligned_cols=260  Identities=24%  Similarity=0.356  Sum_probs=219.4

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||+.+...+.+  +.+++.+.|.+++++++||+.++++|++|+. ..+.++. ..+|.++|||++|+|+.+|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK   80 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence            678888765544  6667777777889999999999999999998 7665432 34578999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+..                             ..+                  |+|++|+.++...++++|++++
T Consensus        81 ~Gd~V~~~-----------------------------~~~------------------~~~~~~~~~~~~~~~~ip~~~~  113 (325)
T TIGR02824        81 VGDRVCAL-----------------------------VAG------------------GGYAEYVAVPAGQVLPVPEGLS  113 (325)
T ss_pred             CCCEEEEc-----------------------------cCC------------------CcceeEEEecHHHcEeCCCCCC
Confidence            99999832                             111                  3599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +.+++.++.++.++|+++.+...++++++++|+|+ |++|++++++++..|+ +|+++.+++++.+.++++|++.+++..
T Consensus       114 ~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~  192 (325)
T TIGR02824       114 LVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAINYR  192 (325)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecC
Confidence            99999999999999998878889999999999997 9999999999999999 899999999888888899998888776


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeeccc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      .   .++.+.+.+..++.++|++++++++. .+..++++++++ |+++.+|........+++..++. ++++.++....
T Consensus       193 ~---~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (325)
T TIGR02824       193 E---EDFVEVVKAETGGKGVDVILDIVGGS-YLNRNIKALALD-GRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLRA  266 (325)
T ss_pred             c---hhHHHHHHHHcCCCCeEEEEECCchH-HHHHHHHhhccC-cEEEEEecCCCCcCCCChHHHHhcCCEEEEEehhh
Confidence            5   67777788877777899999999984 788999999998 99999997654223667766634 99999987654

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.97  E-value=1.5e-29  Score=238.43  Aligned_cols=239  Identities=21%  Similarity=0.233  Sum_probs=193.6

Q ss_pred             eeeEEEecCCCCeEEEEEecCCC---CCCeEEEEEeeeecCccccc-ccCCCCCCC-CCcccccceeEEEEEeCCCCC-C
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPP---KATEVRFKMLYASICHTDVL-SSKGFPLPL-FPRVLGHEGVGMVESIGDEVK-E   88 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~---~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~-~p~v~G~e~~G~Vv~vG~~v~-~   88 (332)
                      .|+++++++++++++++++.|.|   +++||+||+.++++|++|+. +.+...... .|.++|||++|+|+++|++++ .
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (352)
T cd08247           1 YKALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASE   80 (352)
T ss_pred             CceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccC
Confidence            37899999988888888888877   89999999999999999998 543221112 477899999999999999998 8


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCC----ceEE
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN----YVVK  164 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~----~v~~  164 (332)
                      |++||+|+......|+                                          ..|+|++|+.++..    .+++
T Consensus        81 ~~~Gd~V~~~~~~~~~------------------------------------------~~g~~~~~~~v~~~~~~~~~~~  118 (352)
T cd08247          81 WKVGDEVCGIYPHPYG------------------------------------------GQGTLSQYLLVDPKKDKKSITR  118 (352)
T ss_pred             CCCCCEEEEeecCCCC------------------------------------------CCceeeEEEEEccccccceeEE
Confidence            9999999854221110                                          12469999999987    7999


Q ss_pred             cCCCCChhhhhhcccchhhhHHHHHHhh-CCCCCCEEEEECC-ChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHcC
Q 043260          165 VDPSIDLSLAGFLSCGYSSGFGAAWKEF-KVEKGSSVAVFGL-GAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAFG  241 (332)
Q Consensus       165 lP~~~~~~~aa~l~~~~~ta~~al~~~~-~~~~g~~vlV~G~-g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~lg  241 (332)
                      +|+++++++++.++.++.|||+++.+.. .+++|++|+|+|+ |.+|++++++|+.+|. +.|+.+. ++++.+.++++|
T Consensus       119 lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g  197 (352)
T cd08247         119 KPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLG  197 (352)
T ss_pred             CCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhC
Confidence            9999999999999999999999986666 7999999999998 8999999999999854 3566665 455566778999


Q ss_pred             CCeeeCCCCCCCch---HHHHHHH-hcCCCCccEEEEcCCChHHHHHHHHHhc---cCCcEEEEEc
Q 043260          242 MTDFINPDDEPNKS---ISELVKE-MTHGTGVDYGFECTGVASLISEALEATK---LGKGKVMAIG  300 (332)
Q Consensus       242 a~~v~~~~~~~~~~---~~~~~~~-~~~~~g~d~vid~~g~~~~~~~~~~~l~---~~~G~~v~~G  300 (332)
                      ++.+++.++   .+   +...+.+ .+++.++|++||++|+...+..++++++   ++ |+++.++
T Consensus       198 ~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~-G~~v~~~  259 (352)
T cd08247         198 ADHFIDYDA---HSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKN-GHYVTIV  259 (352)
T ss_pred             CCEEEecCC---CcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCC-CEEEEEe
Confidence            999988765   33   4444444 4435689999999998667889999999   98 9999875

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=2.1e-29  Score=233.62  Aligned_cols=238  Identities=27%  Similarity=0.366  Sum_probs=206.3

Q ss_pred             eeeEEEecCC--CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           15 AAAVVCWGEG--EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        15 ~~a~~~~~~~--~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      |||+++.+++  +.+++++++.|++.+++|+||+.++++|++|+. +.+.......|.++|||++|+|+.+|++++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~   80 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV   80 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence            7999999988  359999999999999999999999999999998 7665433334778999999999999999999999


Q ss_pred             CCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           92 GDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        92 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      ||+|+..+.                          +..                  .|+|++|+.++.+.++++|+++++
T Consensus        81 Gd~V~~~~~--------------------------~~~------------------~~~~~s~~~~~~~~~~~ip~~~~~  116 (325)
T cd08271          81 GDRVAYHAS--------------------------LAR------------------GGSFAEYTVVDARAVLPLPDSLSF  116 (325)
T ss_pred             CCEEEeccC--------------------------CCC------------------CccceeEEEeCHHHeEECCCCCCH
Confidence            999985321                          111                  235999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      .+++.+.+++.+|++++.+...+++|++++|+|+ |++|++++++++..|+ +|+++. ++++.+.+.++|++.+++...
T Consensus       117 ~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~~~  194 (325)
T cd08271         117 EEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDYND  194 (325)
T ss_pred             HHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecCCC
Confidence            9999999999999999878888999999999998 8999999999999998 788776 667788888899999988776


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                         .++.+.+.+++.++++|++++++++. .....++++++. |+++.+|...
T Consensus       195 ---~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~-G~~v~~~~~~  242 (325)
T cd08271         195 ---EDVCERIKEITGGRGVDAVLDTVGGE-TAAALAPTLAFN-GHLVCIQGRP  242 (325)
T ss_pred             ---ccHHHHHHHHcCCCCCcEEEECCCcH-hHHHHHHhhccC-CEEEEEcCCC
Confidence               66777888888777899999999985 567789999998 9999997554

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.97  E-value=5.4e-30  Score=239.02  Aligned_cols=224  Identities=27%  Similarity=0.451  Sum_probs=185.7

Q ss_pred             eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-C---CCCcccccceeEEEEE---eC-CCCCCCCCCCEEEe
Q 043260           27 WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-P---LFPRVLGHEGVGMVES---IG-DEVKELKEGDIVIP   97 (332)
Q Consensus        27 l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~---~~p~v~G~e~~G~Vv~---vG-~~v~~~~vGdrV~~   97 (332)
                      ...++.++|.|.++|++|++.++++|+.|+. ..+.+.. .   .+|.+++.++.|++..   .| ..+..+..||++. 
T Consensus        20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~-   98 (347)
T KOG1198|consen   20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVV-   98 (347)
T ss_pred             EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEe-
Confidence            5567899999999999999999999999999 7776544 2   4776666666555433   34 2233455565554 


Q ss_pred             ecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhhhhhc
Q 043260           98 TFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFL  177 (332)
Q Consensus        98 ~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa~l  177 (332)
                                                  +...                  .|+|+||+.+|...++++|+++++++||++
T Consensus        99 ----------------------------~~~~------------------~g~~aey~v~p~~~~~~~P~~l~~~~aa~~  132 (347)
T KOG1198|consen   99 ----------------------------AFLS------------------SGGLAEYVVVPEKLLVKIPESLSFEEAAAL  132 (347)
T ss_pred             ----------------------------eccC------------------CCceeeEEEcchhhccCCCCccChhhhhcC
Confidence                                        1222                  246999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHhh------CCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          178 SCGYSSGFGAAWKEF------KVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       178 ~~~~~ta~~al~~~~------~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      +.++.|||.++....      ++++|++|||+|+ |++|++++|+|+..|+ ..+++.++++++++++++|+|+++|+++
T Consensus       133 p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy~~  211 (347)
T KOG1198|consen  133 PLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDYKD  211 (347)
T ss_pred             chHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecCCC
Confidence            999999999999888      8999999999987 9999999999999995 6777778999999999999999999999


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                         .++.+.+.+.+ +.+||+||||+|+. .+...+.++..+ |+...++..++
T Consensus       212 ---~~~~e~~kk~~-~~~~DvVlD~vg~~-~~~~~~~~l~~~-g~~~~i~~~~~  259 (347)
T KOG1198|consen  212 ---ENVVELIKKYT-GKGVDVVLDCVGGS-TLTKSLSCLLKG-GGGAYIGLVGD  259 (347)
T ss_pred             ---HHHHHHHHhhc-CCCccEEEECCCCC-ccccchhhhccC-CceEEEEeccc
Confidence               99999999988 66999999999995 777888888887 76555555544

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=1.6e-28  Score=227.48  Aligned_cols=264  Identities=26%  Similarity=0.366  Sum_probs=218.6

Q ss_pred             eeeEEEecCCC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      ||+++++..+.  .+.+.+.+.|.+.+++++|++.++++|++|.. ..+.... ..+|.++|||++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA   80 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence            68888886553  37777888888899999999999999999988 6665432 34578899999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+..+..                        +...                  .|+|++|+.++.+.++++|++++
T Consensus        81 ~Gd~V~~~~~~------------------------~~~~------------------~g~~~~~~~~~~~~~~~~p~~~~  118 (328)
T cd08268          81 VGDRVSVIPAA------------------------DLGQ------------------YGTYAEYALVPAAAVVKLPDGLS  118 (328)
T ss_pred             CCCEEEecccc------------------------ccCC------------------CccceEEEEechHhcEeCCCCCC
Confidence            99999854321                        0001                  24699999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +++++.+++++.++|.++.+...+.++++++|+|+ |.+|++++++++..|+ +++.++.++++++.++++|.+.+++..
T Consensus       119 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~  197 (328)
T cd08268         119 FVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIVTD  197 (328)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEecC
Confidence            99999999999999999877788999999999998 9999999999999998 899999999999888889998888876


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHh-HhcCcEEEEeecc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPA-IALGRNLKGTIFG  326 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~-~~~~~~i~g~~~~  326 (332)
                      .   .++.+.+.+++.+.++|++++++++ .....++++++++ |+++.+|........++... +.+++++.+....
T Consensus       198 ~---~~~~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (328)
T cd08268         198 E---EDLVAEVLRITGGKGVDVVFDPVGG-PQFAKLADALAPG-GTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLD  270 (328)
T ss_pred             C---ccHHHHHHHHhCCCCceEEEECCch-HhHHHHHHhhccC-CEEEEEEeCCCCCCCCchHHHhhcCCEEEEEecc
Confidence            6   6777778777777789999999998 5788999999998 99999987653223445443 3448888887654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.97  E-value=9.3e-29  Score=230.42  Aligned_cols=254  Identities=26%  Similarity=0.275  Sum_probs=205.2

Q ss_pred             eeeEEEecCC------CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC---CCCCCcccccceeEEEEEeCC
Q 043260           15 AAAVVCWGEG------EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP---LPLFPRVLGHEGVGMVESIGD   84 (332)
Q Consensus        15 ~~a~~~~~~~------~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~---~~~~p~v~G~e~~G~Vv~vG~   84 (332)
                      .|+|++++..      +.+++++.+.|++.+++|+||+.++++|+.|.. ..+...   ....+.++|+|++|+|+++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~   81 (329)
T cd05288           2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS   81 (329)
T ss_pred             CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence            4677776433      238899999999999999999999999998766 443211   112345789999999999996


Q ss_pred             CCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecC-CceE
Q 043260           85 EVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDA-NYVV  163 (332)
Q Consensus        85 ~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~-~~v~  163 (332)
                      +  ++++||+|+..                                                  ++|++|+.++. +.++
T Consensus        82 ~--~~~~Gd~V~~~--------------------------------------------------~~~~~~~~v~~~~~~~  109 (329)
T cd05288          82 P--DFKVGDLVSGF--------------------------------------------------LGWQEYAVVDGASGLR  109 (329)
T ss_pred             C--CCCCCCEEecc--------------------------------------------------cceEEEEEecchhhcE
Confidence            4  79999999821                                                  14999999999 9999


Q ss_pred             EcCCCCC--hhhhhh-cccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH
Q 043260          164 KVDPSID--LSLAGF-LSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA  239 (332)
Q Consensus       164 ~lP~~~~--~~~aa~-l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~  239 (332)
                      ++|++++  +.+++. +++++.|||+++.+...+.++++|||+|+ |++|++++++++..|+ +|+++++++++.+.+++
T Consensus       110 ~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~  188 (329)
T cd05288         110 KLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVE  188 (329)
T ss_pred             ECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            9999995  545555 88899999999877788999999999996 9999999999999999 89999999999999988


Q ss_pred             -cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCC-cc----cCChHh
Q 043260          240 -FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEA-KV----PLNFPA  313 (332)
Q Consensus       240 -lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~-~~----~~~~~~  313 (332)
                       +|++.++++++   .++.+.+.++++ .++|++||++|+ ..+..++++++++ |+++.+|..... ..    .++...
T Consensus       189 ~~g~~~~~~~~~---~~~~~~v~~~~~-~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~  262 (329)
T cd05288         189 ELGFDAAINYKT---PDLAEALKEAAP-DGIDVYFDNVGG-EILDAALTLLNKG-GRIALCGAISQYNATEPPGPKNLGN  262 (329)
T ss_pred             hcCCceEEecCC---hhHHHHHHHhcc-CCceEEEEcchH-HHHHHHHHhcCCC-ceEEEEeeccCcccccccccccHHH
Confidence             99999998876   677777887775 589999999998 5889999999998 999999976542 11    123333


Q ss_pred             Hhc-CcEEEEeeccc
Q 043260          314 IAL-GRNLKGTIFGG  327 (332)
Q Consensus       314 ~~~-~~~i~g~~~~~  327 (332)
                      ++. ++++.++....
T Consensus       263 ~~~~~~~~~~~~~~~  277 (329)
T cd05288         263 IITKRLTMQGFIVSD  277 (329)
T ss_pred             HhhCcceEEeecchh
Confidence            344 88888876544

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08251 polyketide_synthase polyketide synthase

Probab=99.97  E-value=1.1e-28  Score=226.21  Aligned_cols=237  Identities=23%  Similarity=0.334  Sum_probs=201.4

Q ss_pred             cCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCccccc
Q 043260           34 VEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTS  111 (332)
Q Consensus        34 ~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~  111 (332)
                      +|++.+++|+||+.++++|++|+. +.+.++. ..+|.++|||++|+|+++|++++++++||+|+.....          
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~----------   71 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE----------   71 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence            578899999999999999999998 7665443 3568899999999999999999999999999843210          


Q ss_pred             CCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHh
Q 043260          112 EMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKE  191 (332)
Q Consensus       112 g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~  191 (332)
                                                         ..|+|++|+.++.+.++++|+++++++++.++.++.+||+++ +.
T Consensus        72 -----------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~~  115 (303)
T cd08251          72 -----------------------------------SMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-AR  115 (303)
T ss_pred             -----------------------------------CCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-Hh
Confidence                                               124599999999999999999999999999999999999987 57


Q ss_pred             hCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          192 FKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       192 ~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      .++++|++++|+|+ |.+|++++++++.+|+ +|+++++++++++.++++|++.+++...   .++.+.+.+++++.++|
T Consensus       116 ~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d  191 (303)
T cd08251         116 AGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE---EDFEEEIMRLTGGRGVD  191 (303)
T ss_pred             cCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHcCCCCce
Confidence            89999999999976 9999999999999999 8999999999999999999999998876   67888888888888999


Q ss_pred             EEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEE
Q 043260          271 YGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKG  322 (332)
Q Consensus       271 ~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g  322 (332)
                      +++|++++ ..+...+++++++ |+++.+|..+. ....++...+..+..+..
T Consensus       192 ~v~~~~~~-~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (303)
T cd08251         192 VVINTLSG-EAIQKGLNCLAPG-GRYVEIAMTALKSAPSVDLSVLSNNQSFHS  242 (303)
T ss_pred             EEEECCcH-HHHHHHHHHhccC-cEEEEEeccCCCccCccChhHhhcCceEEE
Confidence            99999976 5888999999998 99999987653 233455544444554443

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.97  E-value=4.5e-29  Score=220.59  Aligned_cols=243  Identities=24%  Similarity=0.317  Sum_probs=203.6

Q ss_pred             CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeC--CCCCCCCCCCEEEeecccC
Q 043260           26 PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIG--DEVKELKEGDIVIPTFIGE  102 (332)
Q Consensus        26 ~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG--~~v~~~~vGdrV~~~~~~~  102 (332)
                      +++++++++|+|++||||+|+.|.+++| .++ ++...+..-.|.-+|-..+|.+++..  |+..+|++||.|+..    
T Consensus        26 ~F~lee~~vp~p~~GqvLl~~~ylS~DP-ymRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~----  100 (340)
T COG2130          26 DFRLEEVDVPEPGEGQVLLRTLYLSLDP-YMRGRMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV----  100 (340)
T ss_pred             CceeEeccCCCCCcCceEEEEEEeccCH-HHeecccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec----
Confidence            3999999999999999999999999998 444 66665555567778887776665543  567789999999832    


Q ss_pred             CCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh--hhhhhcccc
Q 043260          103 CRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL--SLAGFLSCG  180 (332)
Q Consensus       103 c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~--~~aa~l~~~  180 (332)
                                                                    .+|+||..++.+.+.|+++..-+  .....+..+
T Consensus       101 ----------------------------------------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmp  134 (340)
T COG2130         101 ----------------------------------------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMP  134 (340)
T ss_pred             ----------------------------------------------ccceEEEeechhhceecCCCCCCcchHHhhcCCc
Confidence                                                          14999999999999999865322  222335669


Q ss_pred             hhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCCeeeCCCCCCCchHHH
Q 043260          181 YSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMTDFINPDDEPNKSISE  258 (332)
Q Consensus       181 ~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~  258 (332)
                      ..|||.+|.+.++.++|++|+|.+| |++|..+.|+||..|+ +||.+..++||.+++++ +|.|.++|+++   +++.+
T Consensus       135 G~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~---~d~~~  210 (340)
T COG2130         135 GLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA---EDFAQ  210 (340)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc---ccHHH
Confidence            9999999999999999999999988 9999999999999999 99999999999999987 99999999999   89999


Q ss_pred             HHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC--Cc-ccCC---hHhHhc-CcEEEEeecc
Q 043260          259 LVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE--AK-VPLN---FPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       259 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~--~~-~~~~---~~~~~~-~~~i~g~~~~  326 (332)
                      ++.+.++. |.|+.||++|+ ..+...+..|+.. +|+.++|..+.  .+ .+.-   ...++. .+++.|+...
T Consensus       211 ~L~~a~P~-GIDvyfeNVGg-~v~DAv~~~ln~~-aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~  282 (340)
T COG2130         211 ALKEACPK-GIDVYFENVGG-EVLDAVLPLLNLF-ARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVA  282 (340)
T ss_pred             HHHHHCCC-CeEEEEEcCCc-hHHHHHHHhhccc-cceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEec
Confidence            99999986 99999999999 5999999999998 99999998665  22 2222   233444 8899999883

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=2.2e-28  Score=227.97  Aligned_cols=232  Identities=28%  Similarity=0.377  Sum_probs=196.4

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      .||++++..+.+  +++++.+.|.|.++||+||+.++++|++|+. +.+..+. ..+|.++|||++|+|+.+|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (331)
T cd08273           1 NREVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFE   80 (331)
T ss_pred             CeeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCC
Confidence            378888876643  8888889999999999999999999999998 7665432 35688999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|+..+                             ..                  |+|++|+.++.+.++++|++++
T Consensus        81 ~Gd~V~~~~-----------------------------~~------------------g~~~~~~~~~~~~~~~~p~~~~  113 (331)
T cd08273          81 VGDRVAALT-----------------------------RV------------------GGNAEYINLDAKYLVPVPEGVD  113 (331)
T ss_pred             CCCEEEEeC-----------------------------CC------------------cceeeEEEechHHeEECCCCCC
Confidence            999998431                             11                  3599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +++++.+++++.+||+++.+...+.+|++|+|+|+ |++|++++++++..|+ +|+.++. +++.+.++++|++. ++..
T Consensus       114 ~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~~  190 (331)
T cd08273         114 AAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-IDYR  190 (331)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-EcCC
Confidence            99999999999999999877788999999999997 9999999999999999 8998887 88888889999764 3443


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .   .++.+.  +... .++|++++++++. .+..++++++++ |+++.+|....
T Consensus       191 ~---~~~~~~--~~~~-~~~d~vl~~~~~~-~~~~~~~~l~~~-g~~v~~g~~~~  237 (331)
T cd08273         191 T---KDWLPA--MLTP-GGVDVVFDGVGGE-SYEESYAALAPG-GTLVCYGGNSS  237 (331)
T ss_pred             C---cchhhh--hccC-CCceEEEECCchH-HHHHHHHHhcCC-CEEEEEccCCC
Confidence            3   344333  3333 4899999999986 588999999998 99999997764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.96  E-value=1.1e-27  Score=221.24  Aligned_cols=259  Identities=27%  Similarity=0.423  Sum_probs=214.2

Q ss_pred             eeeEEEecCCC--CeEEEEEecCCCC-CCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCC
Q 043260           15 AAAVVCWGEGE--PWKVEEIQVEPPK-ATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKEL   89 (332)
Q Consensus        15 ~~a~~~~~~~~--~l~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~   89 (332)
                      |+|+++..++.  .+++.+.+ |.+. +++++||+.++++|++|+. +.+.+.. ...|.++|||++|+|+.+|++++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF   79 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence            68888875433  26777777 6665 5999999999999999998 6665432 3346689999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCC
Q 043260           90 KEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSI  169 (332)
Q Consensus        90 ~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~  169 (332)
                      ++||+|+..+                             .                  .|++++|+.++.+.++++|+++
T Consensus        80 ~~G~~V~~~~-----------------------------~------------------~~~~~~~~~~~~~~~~~ip~~~  112 (323)
T cd08241          80 KVGDRVVALT-----------------------------G------------------QGGFAEEVVVPAAAVFPLPDGL  112 (323)
T ss_pred             CCCCEEEEec-----------------------------C------------------CceeEEEEEcCHHHceeCCCCC
Confidence            9999998431                             1                  1359999999999999999999


Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      ++.+++.+..++.+|+.++.+...++++++++|+|+ |++|++++++++..|+ +|++++.++++.+.++++|++.+++.
T Consensus       113 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~  191 (323)
T cd08241         113 SFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDY  191 (323)
T ss_pred             CHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceeeec
Confidence            999998888899999998877788999999999998 9999999999999999 89999999999999999999888877


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhH-hcCcEEEEeeccc
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI-ALGRNLKGTIFGG  327 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~-~~~~~i~g~~~~~  327 (332)
                      ..   .++.+.+.+.+++.++|.+++++|+ ..+..++++++++ |+++.+|........+++... ..++++.++....
T Consensus       192 ~~---~~~~~~i~~~~~~~~~d~v~~~~g~-~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (323)
T cd08241         192 RD---PDLRERVKALTGGRGVDVVYDPVGG-DVFEASLRSLAWG-GRLLVIGFASGEIPQIPANLLLLKNISVVGVYWGA  266 (323)
T ss_pred             CC---ccHHHHHHHHcCCCCcEEEEECccH-HHHHHHHHhhccC-CEEEEEccCCCCcCcCCHHHHhhcCcEEEEEeccc
Confidence            66   6788888888887789999999998 5788999999998 999999976532122444233 3388888876554

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.96  E-value=1e-27  Score=217.64  Aligned_cols=229  Identities=23%  Similarity=0.293  Sum_probs=195.1

Q ss_pred             CeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCC
Q 043260           40 TEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCL  118 (332)
Q Consensus        40 ~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~  118 (332)
                      +||+||+.++++|++|+. ..+..  ..+|.++|||++|+|+++|++++.+++||+|+...                   
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~--~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~-------------------   59 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLL--PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA-------------------   59 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCC--CCCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence            589999999999999999 76654  34678999999999999999999999999998431                   


Q ss_pred             CCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCC
Q 043260          119 KYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGS  198 (332)
Q Consensus       119 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~  198 (332)
                                                   .|+|+||+.++.+.++++|+++++.+++.+++++.++|.++.+...+++|+
T Consensus        60 -----------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~  110 (293)
T cd05195          60 -----------------------------PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGE  110 (293)
T ss_pred             -----------------------------cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCC
Confidence                                         245999999999999999999999999999899999999987778999999


Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC--CCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG--MTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg--a~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      +|+|+|+ |.+|++++++++.+|+ +|++++.++++.+.++++|  ++.+++...   .++.+.+.+.+.++++|+++++
T Consensus       111 ~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~  186 (293)
T cd05195         111 SVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD---LSFADGILRATGGRGVDVVLNS  186 (293)
T ss_pred             EEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc---hhHHHHHHHHhCCCCceEEEeC
Confidence            9999986 9999999999999999 8999999989999998888  778887765   6777888888877789999999


Q ss_pred             CCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEee
Q 043260          276 TGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTI  324 (332)
Q Consensus       276 ~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~  324 (332)
                      +++. .+..++++++++ |+++.+|.... ....++...+..++++.+..
T Consensus       187 ~~~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  234 (293)
T cd05195         187 LSGE-LLRASWRCLAPF-GRFVEIGKRDILSNSKLGMRPFLRNVSFSSVD  234 (293)
T ss_pred             CCch-HHHHHHHhcccC-ceEEEeeccccccCCccchhhhccCCeEEEEe
Confidence            9996 889999999998 99999997654 22334444433456665544

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.96  E-value=1.1e-27  Score=219.85  Aligned_cols=234  Identities=22%  Similarity=0.297  Sum_probs=196.5

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC---CCCCCcccccceeEEEEEeCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP---LPLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      |||++++.++..  +.+++.+.|.++++||+||+.++++|+.|+. +.+...   ...+|..+|||++|+|+.+|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            688888876642  5667778888899999999999999999998 766542   3455889999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      +++||+|+..+..                          ..                  .|+|++|+.++...++++|++
T Consensus        81 ~~~G~~V~~~~~~--------------------------~~------------------~g~~~~~~~~~~~~~~~~p~~  116 (309)
T cd05289          81 FKVGDEVFGMTPF--------------------------TR------------------GGAYAEYVVVPADELALKPAN  116 (309)
T ss_pred             CCCCCEEEEccCC--------------------------CC------------------CCcceeEEEecHHHhccCCCC
Confidence            9999999844210                          00                  245999999999999999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN  247 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~  247 (332)
                      +++..++.+++.+.++++++.+...+.+|++++|+|+ |.+|++++++++..|+ +|++++.++ +.+.++++|++.+++
T Consensus       117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~~~  194 (309)
T cd05289         117 LSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEVID  194 (309)
T ss_pred             CCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEEEe
Confidence            9999999999899999998877667999999999997 9999999999999999 888888777 888888999888887


Q ss_pred             CCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ...   .++.+    .+.+.++|++++++++. ....++++++++ |+++.+|...
T Consensus       195 ~~~---~~~~~----~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~-g~~v~~g~~~  241 (309)
T cd05289         195 YTK---GDFER----AAAPGGVDAVLDTVGGE-TLARSLALVKPG-GRLVSIAGPP  241 (309)
T ss_pred             CCC---Cchhh----ccCCCCceEEEECCchH-HHHHHHHHHhcC-cEEEEEcCCC
Confidence            665   44433    34455899999999985 888999999998 9999999765

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=8.9e-27  Score=217.07  Aligned_cols=256  Identities=24%  Similarity=0.311  Sum_probs=205.6

Q ss_pred             eeEEEecCCC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           16 AAVVCWGEGE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        16 ~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      ||+++...+.  .+.+.+.+.|++.+++|+||+.++++|++|+. +.+.++. ...|.++|||++|+|+.+|+++.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   80 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV   80 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence            4666665443  37777888888899999999999999999998 7665432 345778999999999999999999999


Q ss_pred             CCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           92 GDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        92 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      ||+|+...                             .+                  |+|++|+.++.+.++++|+++++
T Consensus        81 G~~V~~~~-----------------------------~~------------------~~~~~~~~~~~~~~~~ip~~~~~  113 (337)
T cd08275          81 GDRVMGLT-----------------------------RF------------------GGYAEVVNVPADQVFPLPDGMSF  113 (337)
T ss_pred             CCEEEEec-----------------------------CC------------------CeeeeEEEecHHHeEECCCCCCH
Confidence            99998431                             11                  35999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHHHHcCCCeeeCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGID-KNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~-~~~~~~~~~~~lga~~v~~~~  249 (332)
                      ++++.+++++.++|+++.+...+++|++|+|+|+ |.+|++++++++.. . .+++++ .++++.+.++++|++.+++..
T Consensus       114 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~-~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~  191 (337)
T cd08275         114 EEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV-P-NVTVVGTASASKHEALKENGVTHVIDYR  191 (337)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc-c-CcEEEEeCCHHHHHHHHHcCCcEEeeCC
Confidence            9999999999999999878889999999999998 99999999999998 2 233333 234577888889998888877


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-Ccc---------------cCChHh
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKV---------------PLNFPA  313 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~---------------~~~~~~  313 (332)
                      .   .++.+.+.+.++ .++|+++|++|+. .+..++++++++ |+++.+|.... ...               .++...
T Consensus       192 ~---~~~~~~~~~~~~-~~~d~v~~~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (337)
T cd08275         192 T---QDYVEEVKKISP-EGVDIVLDALGGE-DTRKSYDLLKPM-GRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMK  265 (337)
T ss_pred             C---CcHHHHHHHHhC-CCceEEEECCcHH-HHHHHHHhhccC-cEEEEEeecCCcCcccccccccccccccccccCHHH
Confidence            6   677777877775 5899999999984 778999999998 99999997653 111               222233


Q ss_pred             Hhc-CcEEEEeecc
Q 043260          314 IAL-GRNLKGTIFG  326 (332)
Q Consensus       314 ~~~-~~~i~g~~~~  326 (332)
                      ++. ++++.++...
T Consensus       266 ~~~~~~~~~~~~~~  279 (337)
T cd08275         266 LISENKSVLGFNLG  279 (337)
T ss_pred             HhhcCceEEEeech
Confidence            344 8888887654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>smart00829 PKS_ER Enoylreductase

Probab=99.95  E-value=8e-27  Score=211.68  Aligned_cols=225  Identities=22%  Similarity=0.323  Sum_probs=191.2

Q ss_pred             EEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCcc
Q 043260           44 FKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF  122 (332)
Q Consensus        44 Vkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~  122 (332)
                      ||+.++++|++|+. +.+.++   .|.++|||++|+|+++|++++.+++||+|+...                       
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~-----------------------   55 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA-----------------------   55 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-----------------------
Confidence            89999999999999 766543   367899999999999999999999999998321                       


Q ss_pred             ccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEE
Q 043260          123 TFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAV  202 (332)
Q Consensus       123 ~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV  202 (332)
                                               .|+|++|+.++.+.++++|+++++++++.+++++.++|.++.+...+.+|++|+|
T Consensus        56 -------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv  110 (288)
T smart00829       56 -------------------------PGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLI  110 (288)
T ss_pred             -------------------------CCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEE
Confidence                                     1459999999999999999999999999999999999998877788999999999


Q ss_pred             ECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC--CeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCCh
Q 043260          203 FGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM--TDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVA  279 (332)
Q Consensus       203 ~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga--~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~  279 (332)
                      +|+ |.+|++++++++..|+ +|+++++++++++.++++|+  +.+++...   .++.+.+.+.++++++|+++|++++ 
T Consensus       111 ~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~-  185 (288)
T smart00829      111 HAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD---LSFADEILRATGGRGVDVVLNSLAG-  185 (288)
T ss_pred             ecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC---ccHHHHHHHHhCCCCcEEEEeCCCH-
Confidence            986 9999999999999999 89999999999999999998  77887766   6677788888877789999999996 


Q ss_pred             HHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeec
Q 043260          280 SLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIF  325 (332)
Q Consensus       280 ~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~  325 (332)
                      ..+..++++++++ |+++.+|.... ....++...+..++++.+...
T Consensus       186 ~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (288)
T smart00829      186 EFLDASLRCLAPG-GRFVEIGKRDIRDNSQLGMAPFRRNVSYHAVDL  231 (288)
T ss_pred             HHHHHHHHhccCC-cEEEEEcCcCCccccccchhhhcCCceEEEEEH
Confidence            6888999999998 99999997643 223444444334666666543

Enoylreductase in Polyketide synthases.

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=1.2e-26  Score=214.67  Aligned_cols=224  Identities=23%  Similarity=0.266  Sum_probs=185.6

Q ss_pred             EEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC---CCCCCcccccceeEEEEEeCCCCCCCCCCCEEEeecccCC
Q 043260           28 KVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP---LPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGEC  103 (332)
Q Consensus        28 ~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c  103 (332)
                      ++++.+.|++.++||+|+++++++|++|+. +.+..+   ....|..+|||++|.|+++|+++.++++||+|+..+..  
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~--   92 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP--   92 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence            778889999999999999999999999998 766542   13356789999999999999999999999999843210  


Q ss_pred             CCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhhhhhcccchhh
Q 043260          104 RECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSS  183 (332)
Q Consensus       104 ~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~t  183 (332)
                                              ..                  .|+|++|+.++.+.++++|+++++++++.+++++.+
T Consensus        93 ------------------------~~------------------~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~  130 (319)
T cd08267          93 ------------------------KG------------------GGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLT  130 (319)
T ss_pred             ------------------------CC------------------CceeeEEEEechhheEECCCCCCHHHHHhhhhHHHH
Confidence                                    00                  145999999999999999999999999999999999


Q ss_pred             hHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHH
Q 043260          184 GFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKE  262 (332)
Q Consensus       184 a~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~  262 (332)
                      ||+++.+...+++|++|+|+|+ |++|++++++++..|+ +|++++.+ ++.+.++++|++++++...   .++.   ..
T Consensus       131 a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~~---~~  202 (319)
T cd08267         131 ALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT---EDFV---AL  202 (319)
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC---CCcc---hh
Confidence            9999877777999999999998 9999999999999999 89888765 7888889999988887765   3333   34


Q ss_pred             hcCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          263 MTHGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .+.+.++|++++++++. ......+..++++ |+++.+|....
T Consensus       203 ~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~-g~~i~~g~~~~  244 (319)
T cd08267         203 TAGGEKYDVIFDAVGNSPFSLYRASLALKPG-GRYVSVGGGPS  244 (319)
T ss_pred             ccCCCCCcEEEECCCchHHHHHHhhhccCCC-CEEEEeccccc
Confidence            55566899999999852 2334444458998 99999997654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.92  E-value=2.3e-23  Score=189.65  Aligned_cols=201  Identities=24%  Similarity=0.311  Sum_probs=163.9

Q ss_pred             CCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccc
Q 043260           60 KGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRG  139 (332)
Q Consensus        60 g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~  139 (332)
                      |.+| .++|.++|||++|+|+++|++++++++||+|+..                                         
T Consensus        14 ~~~~-~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~-----------------------------------------   51 (277)
T cd08255          14 GTEK-LPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF-----------------------------------------   51 (277)
T ss_pred             cCcc-CcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-----------------------------------------
Confidence            4344 3588999999999999999999999999999832                                         


Q ss_pred             cceecccccCCceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHc
Q 043260          140 QKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQ  219 (332)
Q Consensus       140 ~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~  219 (332)
                               +.|++|+.++.+.++++|+++++++++.+ +++.+||+++ ...++++|++++|+|+|.+|++++++|+.+
T Consensus        52 ---------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~  120 (277)
T cd08255          52 ---------GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAKAA  120 (277)
T ss_pred             ---------CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHc
Confidence                     13899999999999999999999999988 7899999987 578999999999998899999999999999


Q ss_pred             CCCeEEEEcCCcchHHHHHHcC-CCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEE
Q 043260          220 GAAKIIGIDKNPCRKDKGEAFG-MTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMA  298 (332)
Q Consensus       220 G~~~Vi~~~~~~~~~~~~~~lg-a~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~  298 (332)
                      |+++|+++++++++.+.++++| ++.+++...           ..+.+.++|++||+++....+...+++++++ |+++.
T Consensus       121 g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~~~  188 (277)
T cd08255         121 GAREVVGVDPDAARRELAEALGPADPVAADTA-----------DEIGGRGADVVIEASGSPSALETALRLLRDR-GRVVL  188 (277)
T ss_pred             CCCcEEEECCCHHHHHHHHHcCCCccccccch-----------hhhcCCCCCEEEEccCChHHHHHHHHHhcCC-cEEEE
Confidence            9933999999999999999999 555554321           1234558999999999777889999999998 99999


Q ss_pred             EcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          299 IGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       299 ~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      +|..... .......+.. .+++.++...
T Consensus       189 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~~  216 (277)
T cd08255         189 VGWYGLK-PLLLGEEFHFKRLPIRSSQVY  216 (277)
T ss_pred             EeccCCC-ccccHHHHHhccCeEEeeccc
Confidence            9987643 2112223333 5577776554

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.90  E-value=5.7e-24  Score=167.12  Aligned_cols=107  Identities=42%  Similarity=0.646  Sum_probs=95.0

Q ss_pred             CCeEEEEEeeeecCccccc-ccC-CCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCccc
Q 043260           39 ATEVRFKMLYASICHTDVL-SSK-GFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANL  116 (332)
Q Consensus        39 ~~eVlVkv~~~~i~~~D~~-~~g-~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~  116 (332)
                      |+||||||+++|||++|++ +.+ ......+|.++|||++|+|+++|+++++|++||||++.+...|+.|.+|+.+.+++
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            6899999999999999999 877 34557899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEc
Q 043260          117 CLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKV  165 (332)
Q Consensus       117 c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~l  165 (332)
                      |++....  |+..+|+                  |+||+.+++++++|+
T Consensus        81 c~~~~~~--g~~~~G~------------------~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEVL--GLGLDGG------------------FAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEET--TTSSTCS------------------SBSEEEEEGGGEEEE
T ss_pred             CCCCCEe--EcCCCCc------------------ccCeEEEehHHEEEC
Confidence            9888776  6666665                  999999999999985

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.89  E-value=5.5e-21  Score=168.89  Aligned_cols=244  Identities=24%  Similarity=0.315  Sum_probs=183.6

Q ss_pred             EEEEecC-CCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCccccc----ceeEEEEEeCCCCCCCCCCCEEEeeccc
Q 043260           29 VEEIQVE-PPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGH----EGVGMVESIGDEVKELKEGDIVIPTFIG  101 (332)
Q Consensus        29 ~~~~~~p-~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~----e~~G~Vv~vG~~v~~~~vGdrV~~~~~~  101 (332)
                      ..+.+.+ ++++++||||.+|-+..|--.. +....+. .-.|..+|-    .++|+|++.  +.+++++||.|+     
T Consensus        26 ~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~-----   98 (343)
T KOG1196|consen   26 TTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVW-----   98 (343)
T ss_pred             eeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEE-----
Confidence            3444444 4588999999999999876655 3222222 112222222    678999994  557899999998     


Q ss_pred             CCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCC--ceEEcCC--CCChhhh-hh
Q 043260          102 ECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN--YVVKVDP--SIDLSLA-GF  176 (332)
Q Consensus       102 ~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~--~v~~lP~--~~~~~~a-a~  176 (332)
                                              |+.                     +|.||.+++++  ..+++|.  ++++.-. .+
T Consensus        99 ------------------------g~~---------------------gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~  133 (343)
T KOG1196|consen   99 ------------------------GIV---------------------GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGL  133 (343)
T ss_pred             ------------------------Eec---------------------cceEEEEecCcchhcccCCCCCccCHhhhhhc
Confidence                                    222                     39999999764  4555543  3333222 23


Q ss_pred             cccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCeeeCCCCCCCc
Q 043260          177 LSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTDFINPDDEPNK  254 (332)
Q Consensus       177 l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~v~~~~~~~~~  254 (332)
                      +..+..|||-.+++....++|++|+|-|| |++|+++.|+|+.+|+ .|+.+..++||.++++ ++|.|..+|+++  +.
T Consensus       134 lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~--e~  210 (343)
T KOG1196|consen  134 LGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE--ES  210 (343)
T ss_pred             cCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccC--cc
Confidence            56688999999999999999999999988 9999999999999999 9999999999999886 579999999998  33


Q ss_pred             hHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC--CcccCC---hHhHhc-CcEEEEeecccc
Q 043260          255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE--AKVPLN---FPAIAL-GRNLKGTIFGGI  328 (332)
Q Consensus       255 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~--~~~~~~---~~~~~~-~~~i~g~~~~~~  328 (332)
                      +..+++++..+. |.|+-||++|+ ..+...+..++.. ||++.+|..+-  ...+..   ...++. ++.|.|+.....
T Consensus       211 ~~~~aL~r~~P~-GIDiYfeNVGG-~~lDavl~nM~~~-gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~  287 (343)
T KOG1196|consen  211 DLSAALKRCFPE-GIDIYFENVGG-KMLDAVLLNMNLH-GRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDY  287 (343)
T ss_pred             CHHHHHHHhCCC-cceEEEeccCc-HHHHHHHHhhhhc-cceEeeeeehhccccCCccccchhhheeeeEEeeeEEeech
Confidence            788888887766 99999999999 5999999999998 99999998763  111211   223333 888999877665


Q ss_pred             cc
Q 043260          329 KT  330 (332)
Q Consensus       329 ~~  330 (332)
                      .+
T Consensus       288 ~d  289 (343)
T KOG1196|consen  288 LD  289 (343)
T ss_pred             hh
Confidence            44

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.87  E-value=1.2e-21  Score=196.00  Aligned_cols=240  Identities=19%  Similarity=0.265  Sum_probs=205.3

Q ss_pred             eEEEEEecC--C-CCCCeEEEEEeeeecCccccc-ccCCCCCCCC-------CcccccceeEEEEEeCCCCCCCCCCCEE
Q 043260           27 WKVEEIQVE--P-PKATEVRFKMLYASICHTDVL-SSKGFPLPLF-------PRVLGHEGVGMVESIGDEVKELKEGDIV   95 (332)
Q Consensus        27 l~~~~~~~p--~-~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~-------p~v~G~e~~G~Vv~vG~~v~~~~vGdrV   95 (332)
                      +++.+-|..  . ..++.=+.-|-|+.||.+|+. ..|+.+....       ..++|-||+|+          .+-|.||
T Consensus      1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred             eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence            555555544  2 356777889999999999998 7887665333       35899999997          5669999


Q ss_pred             EeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhhhh
Q 043260           96 IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAG  175 (332)
Q Consensus        96 ~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa  175 (332)
                      +                             |+.+-.+                  +++.+.++.+.+|.+|.....++|+
T Consensus      1499 M-----------------------------~mvpAks------------------LATt~l~~rd~lWevP~~WTleeAs 1531 (2376)
T KOG1202|consen 1499 M-----------------------------GMVPAKS------------------LATTVLASRDFLWEVPSKWTLEEAS 1531 (2376)
T ss_pred             E-----------------------------Eeeehhh------------------hhhhhhcchhhhhhCCcccchhhcc
Confidence            8                             4444333                  8999999999999999999999999


Q ss_pred             hcccchhhhHHHHHHhhCCCCCCEEEEEC-CChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc----CCCeeeCCCC
Q 043260          176 FLSCGYSSGFGAAWKEFKVEKGSSVAVFG-LGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF----GMTDFINPDD  250 (332)
Q Consensus       176 ~l~~~~~ta~~al~~~~~~~~g~~vlV~G-~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~  250 (332)
                      +.|+.++|||+|+..+.++++|+++||++ +|++|++++.+|.++|+ +|+.+..++||++++.++    -...+-|.++
T Consensus      1532 tVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRd 1610 (2376)
T KOG1202|consen 1532 TVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANSRD 1610 (2376)
T ss_pred             cCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhhhhhccccccc
Confidence            99999999999999999999999999995 59999999999999999 999999999999987653    3566778888


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeeccccc
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIFGGIK  329 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~  329 (332)
                         .+|..-+...|+|+|+|+|+++... +-++..++||+.. |||..+|--.. +..++...-+++|.+++|...-+..
T Consensus      1611 ---tsFEq~vl~~T~GrGVdlVLNSLae-EkLQASiRCLa~~-GRFLEIGKfDLSqNspLGMavfLkNvsfHGiLLDsvm 1685 (2376)
T KOG1202|consen 1611 ---TSFEQHVLWHTKGRGVDLVLNSLAE-EKLQASIRCLALH-GRFLEIGKFDLSQNSPLGMAVFLKNVSFHGILLDSVM 1685 (2376)
T ss_pred             ---ccHHHHHHHHhcCCCeeeehhhhhH-HHHHHHHHHHHhc-CeeeeecceecccCCcchhhhhhcccceeeeehhhhh
Confidence               8999999999999999999999988 5899999999998 99999997665 7788888888889999999876654

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.75  E-value=1.4e-17  Score=134.58  Aligned_cols=117  Identities=25%  Similarity=0.490  Sum_probs=109.9

Q ss_pred             hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHH
Q 043260          207 AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEAL  286 (332)
Q Consensus       207 ~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~  286 (332)
                      ++|++++|+|+.+|+ +|++++++++|+++++++|+++++++++   .++.+.+++++++.++|+||||+|++..++.++
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~---~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~   76 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD---DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI   76 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT---SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc---cccccccccccccccceEEEEecCcHHHHHHHH
Confidence            589999999999996 9999999999999999999999999988   889999999999889999999999888999999


Q ss_pred             HHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecccc
Q 043260          287 EATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGGI  328 (332)
Q Consensus       287 ~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~~  328 (332)
                      ++++++ |+++.+|.......+++...+++ ++++.|+..++.
T Consensus        77 ~~l~~~-G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  118 (130)
T PF00107_consen   77 KLLRPG-GRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSP  118 (130)
T ss_dssp             HHEEEE-EEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGH
T ss_pred             HHhccC-CEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCH
Confidence            999998 99999999987778899998888 999999998874

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.27  E-value=6.5e-11  Score=115.52  Aligned_cols=130  Identities=18%  Similarity=0.250  Sum_probs=97.5

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee-eCCCCC----------CCchHHHHHHH
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF-INPDDE----------PNKSISELVKE  262 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~----------~~~~~~~~~~~  262 (332)
                      ..++++|+|+|+|++|+++++.|+.+|+ +|+++|.+++|++.++++|++.+ ++..++          ...++.+..++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            4689999999999999999999999999 89999999999999999999854 555331          01233333333


Q ss_pred             h-cCC-CCccEEEEcCCCh-----HH-HHHHHHHhccCCcEEEEEcCCCCC--cccCChHhHh--cCcEEEEeec
Q 043260          263 M-THG-TGVDYGFECTGVA-----SL-ISEALEATKLGKGKVMAIGAANEA--KVPLNFPAIA--LGRNLKGTIF  325 (332)
Q Consensus       263 ~-~~~-~g~d~vid~~g~~-----~~-~~~~~~~l~~~~G~~v~~G~~~~~--~~~~~~~~~~--~~~~i~g~~~  325 (332)
                      . ... +++|+||+|++.+     .. .+++++.++++ |+++++|...+.  ..+++...+.  .++++.|+..
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG-gvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n  314 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG-SVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTD  314 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC-CEEEEEccCCCCCcccccCccceEeECCEEEEEeCC
Confidence            2 221 4799999999963     35 49999999998 999999986432  2444434444  3889999753

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.10  E-value=1e-09  Score=104.73  Aligned_cols=124  Identities=23%  Similarity=0.228  Sum_probs=99.8

Q ss_pred             hHHHHHHhhCC-CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHH
Q 043260          184 GFGAAWKEFKV-EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKE  262 (332)
Q Consensus       184 a~~al~~~~~~-~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~  262 (332)
                      .+.++.+..++ .+|++|+|+|+|.+|+.+++.++.+|+ +|++++.++.|++.++++|++.+ +        ..+.+  
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~-~--------~~e~v--  255 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVM-T--------MEEAV--  255 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEc-c--------HHHHH--
Confidence            34455454443 689999999999999999999999999 89999999999999999998433 1        11222  


Q ss_pred             hcCCCCccEEEEcCCChHHHHHH-HHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeeccc
Q 043260          263 MTHGTGVDYGFECTGVASLISEA-LEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~~~~~~~-~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                          .++|+||+++|+...+... ++.++++ |+++.+|..   ..+++...+.. ++++.|+..+.
T Consensus       256 ----~~aDVVI~atG~~~~i~~~~l~~mk~G-gilvnvG~~---~~eId~~~L~~~el~i~g~~~~~  314 (413)
T cd00401         256 ----KEGDIFVTTTGNKDIITGEHFEQMKDG-AIVCNIGHF---DVEIDVKGLKENAVEVVNIKPQV  314 (413)
T ss_pred             ----cCCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEeCCC---CCccCHHHHHhhccEEEEccCCc
Confidence                2589999999998888765 9999998 999999964   36788888777 88999887763

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.61  E-value=3.5e-07  Score=89.40  Aligned_cols=108  Identities=20%  Similarity=0.266  Sum_probs=82.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC-----------CCchHHHHHHHh
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE-----------PNKSISELVKEM  263 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~-----------~~~~~~~~~~~~  263 (332)
                      .++++|+|+|+|.+|++++++++.+|+ .|++++.+.++++.++++|++.+.....+           ..+++.+..+++
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            467899999999999999999999999 79999999999999999999764322210           112344433443


Q ss_pred             cC--CCCccEEEEcC---CChH---HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          264 TH--GTGVDYGFECT---GVAS---LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       264 ~~--~~g~d~vid~~---g~~~---~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ..  .+++|+||+++   |.+.   ...+.++.++++ +.+++++...+
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIVDlA~d~G  288 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIVDLAAEQG  288 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEEEeeeCCC
Confidence            33  34699999999   5433   457889999998 99999987665

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.51  E-value=2e-06  Score=82.46  Aligned_cols=103  Identities=27%  Similarity=0.319  Sum_probs=80.2

Q ss_pred             hHHHHHHhhCCC-CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHH
Q 043260          184 GFGAAWKEFKVE-KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKE  262 (332)
Q Consensus       184 a~~al~~~~~~~-~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~  262 (332)
                      +|.++.+..++. .|++|+|+|.|.+|..+++.++.+|+ +|+++++++.|...+...|++ +.+        +.+.+  
T Consensus       198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~~--------l~eal--  265 (425)
T PRK05476        198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VMT--------MEEAA--  265 (425)
T ss_pred             hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ecC--------HHHHH--
Confidence            455554443544 89999999999999999999999999 899999998887766666764 221        11222  


Q ss_pred             hcCCCCccEEEEcCCChHHHH-HHHHHhccCCcEEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGVASLIS-EALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~~~~~-~~~~~l~~~~G~~v~~G~~~  303 (332)
                          .++|+||+++|+...+. ..++.++++ +.++.+|...
T Consensus       266 ----~~aDVVI~aTG~~~vI~~~~~~~mK~G-ailiNvG~~d  302 (425)
T PRK05476        266 ----ELGDIFVTATGNKDVITAEHMEAMKDG-AILANIGHFD  302 (425)
T ss_pred             ----hCCCEEEECCCCHHHHHHHHHhcCCCC-CEEEEcCCCC
Confidence                16899999999977776 688889987 8999998765

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.43  E-value=3.7e-08  Score=95.08  Aligned_cols=180  Identities=16%  Similarity=0.184  Sum_probs=114.8

Q ss_pred             ccccceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccC
Q 043260           70 VLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCS  149 (332)
Q Consensus        70 v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G  149 (332)
                      .-|.|+++.+.+|++++++     +|++-+.. ||.|.+|    .+.|......  |...++                  
T Consensus        89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~~--g~~l~~------------------  138 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKTV--GKVLER------------------  138 (417)
T ss_pred             cCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCCc--hHHHHH------------------
Confidence            4589999999999999876     55555555 7877777    4445544433  333333                  


Q ss_pred             CceeeEEecCCceEE---c-CCCCChhhhhhcccchhhhHHHH---HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCC
Q 043260          150 TMTEYMVVDANYVVK---V-DPSIDLSLAGFLSCGYSSGFGAA---WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAA  222 (332)
Q Consensus       150 ~~a~~~~v~~~~v~~---l-P~~~~~~~aa~l~~~~~ta~~al---~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~  222 (332)
                      .|++++.++. .+..   + +..++            .++.++   .+..+..++++|+|+|+|.+|..+++.++..|+.
T Consensus       139 lf~~a~~~~k-~vr~~t~i~~~~vS------------v~~~Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~  205 (417)
T TIGR01035       139 LFQKAFSVGK-RVRTETDISAGAVS------------ISSAAVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVG  205 (417)
T ss_pred             HHHHHHHHhh-hhhhhcCCCCCCcC------------HHHHHHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCC
Confidence            4888887765 3332   2 22222            222222   1333446789999999999999999999999966


Q ss_pred             eEEEEcCCcchHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHH--HHHHHHhcc---CCcEE
Q 043260          223 KIIGIDKNPCRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLI--SEALEATKL---GKGKV  296 (332)
Q Consensus       223 ~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~--~~~~~~l~~---~~G~~  296 (332)
                      +|++++++.++.+ +++++|.. .+..     .+..+.+      .++|+||+|++++..+  ...++....   ..-.+
T Consensus       206 ~V~v~~rs~~ra~~la~~~g~~-~i~~-----~~l~~~l------~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~v  273 (417)
T TIGR01035       206 KILIANRTYERAEDLAKELGGE-AVKF-----EDLEEYL------AEADIVISSTGAPHPIVSKEDVERALRERTRPLFI  273 (417)
T ss_pred             EEEEEeCCHHHHHHHHHHcCCe-EeeH-----HHHHHHH------hhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEE
Confidence            9999999988754 67777764 2222     2222222      2589999999876443  122333222   10267


Q ss_pred             EEEcCCCC
Q 043260          297 MAIGAANE  304 (332)
Q Consensus       297 v~~G~~~~  304 (332)
                      +.++.+.+
T Consensus       274 iDla~Prd  281 (417)
T TIGR01035       274 IDIAVPRD  281 (417)
T ss_pred             EEeCCCCC
Confidence            78887654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.40  E-value=6.7e-06  Score=78.51  Aligned_cols=111  Identities=27%  Similarity=0.354  Sum_probs=82.9

Q ss_pred             hHHHHHHhhC-CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHH
Q 043260          184 GFGAAWKEFK-VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKE  262 (332)
Q Consensus       184 a~~al~~~~~-~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~  262 (332)
                      ++.++.+..+ ...|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.|...+...|+. +.+        ..+.+  
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~-v~~--------leeal--  248 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR-VMT--------MEEAA--  248 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE-eCC--------HHHHH--
Confidence            3444444433 3689999999999999999999999999 899999988887777777763 321        11222  


Q ss_pred             hcCCCCccEEEEcCCChHHHH-HHHHHhccCCcEEEEEcCCCCCcccCChHhH
Q 043260          263 MTHGTGVDYGFECTGVASLIS-EALEATKLGKGKVMAIGAANEAKVPLNFPAI  314 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~~~~~-~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~  314 (332)
                          .+.|+||+++|+...+. ..+..++++ +.++.+|...   ..++...+
T Consensus       249 ----~~aDVVItaTG~~~vI~~~~~~~mK~G-ailiN~G~~~---~eId~~aL  293 (406)
T TIGR00936       249 ----KIGDIFITATGNKDVIRGEHFENMKDG-AIVANIGHFD---VEIDVKAL  293 (406)
T ss_pred             ----hcCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEECCCC---ceeCHHHH
Confidence                25799999999987776 488888987 8999988764   34555544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.30  E-value=3.5e-06  Score=78.32  Aligned_cols=131  Identities=17%  Similarity=0.173  Sum_probs=91.5

Q ss_pred             CceEEcCCCCChhhhhhcccchhhhHHHHHHhhCC----CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchH-
Q 043260          160 NYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV----EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRK-  234 (332)
Q Consensus       160 ~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~----~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~-  234 (332)
                      ...+++|+.+..+.++... +.+++++++. .+..    .++++|+|+|+|.+|..+++.++..|..+|++++++.++. 
T Consensus       139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~-~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~  216 (311)
T cd05213         139 QKAIKVGKRVRTETGISRG-AVSISSAAVE-LAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE  216 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCC-CcCHHHHHHH-HHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence            4677788999888887765 7778888763 3332    4789999999999999999999988877899999998775 


Q ss_pred             HHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHH---HHHHHHHhccCCcEEEEEcCCCC
Q 043260          235 DKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASL---ISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       235 ~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~---~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ++++++|+. +++.     +++.+.+      ..+|+||.+++.+..   +...++.....+-.++.++.+..
T Consensus       217 ~la~~~g~~-~~~~-----~~~~~~l------~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrd  277 (311)
T cd05213         217 ELAKELGGN-AVPL-----DELLELL------NEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRD  277 (311)
T ss_pred             HHHHHcCCe-EEeH-----HHHHHHH------hcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCC
Confidence            677888873 3322     2222222      148999999998654   23333332212135667887654

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.27  E-value=1.8e-05  Score=72.97  Aligned_cols=95  Identities=18%  Similarity=0.290  Sum_probs=75.8

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .+++++|+|.|.+|+.+++.++.+|+ +|++++++.++++.++++|+..+ ..     .+    +.+...  ++|+||++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~-----~~----l~~~l~--~aDiVI~t  217 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL-----SE----LAEEVG--KIDIIFNT  217 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH-----HH----HHHHhC--CCCEEEEC
Confidence            68999999999999999999999998 99999999988888888887533 11     12    223322  59999999


Q ss_pred             CCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          276 TGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       276 ~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ++..-.....++.++++ +.++.++...+
T Consensus       218 ~p~~~i~~~~l~~~~~g-~vIIDla~~pg  245 (296)
T PRK08306        218 IPALVLTKEVLSKMPPE-ALIIDLASKPG  245 (296)
T ss_pred             CChhhhhHHHHHcCCCC-cEEEEEccCCC
Confidence            88743346777889998 99999988764

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.26  E-value=1.7e-05  Score=71.40  Aligned_cols=132  Identities=17%  Similarity=0.190  Sum_probs=86.6

Q ss_pred             ceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          151 MTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       151 ~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      |.+|.. +...++++++++++..+.- +.+. .....+.  ....++++||-+|+|. |.+++.+++ .|..+|+++|.+
T Consensus        79 ~~~~~~-~~~~~i~i~p~~afgtg~h-~tt~-~~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis  151 (250)
T PRK00517         79 WEDPPD-PDEINIELDPGMAFGTGTH-PTTR-LCLEALE--KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDID  151 (250)
T ss_pred             CcCCCC-CCeEEEEECCCCccCCCCC-HHHH-HHHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECC
Confidence            666644 6778899999998876642 2111 1222221  1357899999999987 887776544 677579999999


Q ss_pred             cchHHHHHHc----CCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCCh---HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          231 PCRKDKGEAF----GMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVA---SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       231 ~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +...+.+++.    +....+...              .+...||+|+.+....   ..+.++.+.|+++ |++++.|...
T Consensus       152 ~~~l~~A~~n~~~~~~~~~~~~~--------------~~~~~fD~Vvani~~~~~~~l~~~~~~~Lkpg-G~lilsgi~~  216 (250)
T PRK00517        152 PQAVEAARENAELNGVELNVYLP--------------QGDLKADVIVANILANPLLELAPDLARLLKPG-GRLILSGILE  216 (250)
T ss_pred             HHHHHHHHHHHHHcCCCceEEEc--------------cCCCCcCEEEEcCcHHHHHHHHHHHHHhcCCC-cEEEEEECcH
Confidence            9888776553    221101000              0111599999876543   2456888899998 9999998765


Q ss_pred             C
Q 043260          304 E  304 (332)
Q Consensus       304 ~  304 (332)
                      .
T Consensus       217 ~  217 (250)
T PRK00517        217 E  217 (250)
T ss_pred             h
Confidence            3

>PLN02494 adenosylhomocysteinase

Probab=98.24  E-value=1.4e-05  Score=77.09  Aligned_cols=102  Identities=21%  Similarity=0.281  Sum_probs=80.2

Q ss_pred             HHHHHHhhCC-CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHh
Q 043260          185 FGAAWKEFKV-EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       185 ~~al~~~~~~-~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~  263 (332)
                      +.++.+..++ -.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+..+ +        ..+.+.  
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~vv-~--------leEal~--  308 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQVL-T--------LEDVVS--  308 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCeec-c--------HHHHHh--
Confidence            4445454444 679999999999999999999999999 89999999888777777777522 1        222221  


Q ss_pred             cCCCCccEEEEcCCChHHH-HHHHHHhccCCcEEEEEcCCC
Q 043260          264 THGTGVDYGFECTGVASLI-SEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~~~~-~~~~~~l~~~~G~~v~~G~~~  303 (332)
                          .+|+||+++|+...+ ...++.++++ +.++.+|...
T Consensus       309 ----~ADVVI~tTGt~~vI~~e~L~~MK~G-AiLiNvGr~~  344 (477)
T PLN02494        309 ----EADIFVTTTGNKDIIMVDHMRKMKNN-AIVCNIGHFD  344 (477)
T ss_pred             ----hCCEEEECCCCccchHHHHHhcCCCC-CEEEEcCCCC
Confidence                479999999987654 7899999998 9999999854

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.07  E-value=1.4e-05  Score=72.81  Aligned_cols=103  Identities=23%  Similarity=0.297  Sum_probs=72.9

Q ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHc----CCCeeeCCCCCCCchHHHHHHHhc-
Q 043260          191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAF----GMTDFINPDDEPNKSISELVKEMT-  264 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~~~~~~-  264 (332)
                      .+.+++|++||.+|+|. |..+.++++..|. .+|+++|.+++.++.+++.    |.+.+....    .+    +.++. 
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~----~d----~~~l~~  142 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRL----GE----IEALPV  142 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE----cc----hhhCCC
Confidence            35788999999999988 8888888888775 3799999999998887763    332221110    11    22221 


Q ss_pred             CCCCccEEEEcC------CChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          265 HGTGVDYGFECT------GVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       265 ~~~g~d~vid~~------g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ....||+|+...      .....+.++.+.|+++ |++++.+...
T Consensus       143 ~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~~~  186 (272)
T PRK11873        143 ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPG-GRFAISDVVL  186 (272)
T ss_pred             CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCC-cEEEEEEeec
Confidence            223799999654      2235789999999998 9999977543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.94  E-value=0.0001  Score=67.63  Aligned_cols=94  Identities=16%  Similarity=0.277  Sum_probs=71.4

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .|++++|+|.|.+|.+++..++.+|+ +|++++++.++.+.+.++|...+ ..     .+    +.+...  .+|+||++
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~~-~~-----~~----l~~~l~--~aDiVint  216 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIPF-PL-----NK----LEEKVA--EIDIVINT  216 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeee-cH-----HH----HHHHhc--cCCEEEEC
Confidence            57899999999999999999999998 99999999888777777775322 11     22    223322  58999999


Q ss_pred             CCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          276 TGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       276 ~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ++..-.-...++.++++ ..++.++...
T Consensus       217 ~P~~ii~~~~l~~~k~~-aliIDlas~P  243 (287)
T TIGR02853       217 IPALVLTADVLSKLPKH-AVIIDLASKP  243 (287)
T ss_pred             CChHHhCHHHHhcCCCC-eEEEEeCcCC
Confidence            97642224677888887 8899998765

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.94  E-value=8.4e-06  Score=81.95  Aligned_cols=80  Identities=19%  Similarity=0.232  Sum_probs=59.0

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC---------------------cchHHHHHHcCCCeeeCCCCC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN---------------------PCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~---------------------~~~~~~~~~lga~~v~~~~~~  251 (332)
                      ..++|++|+|+|+|+.|+++++.++..|+ +|++++..                     +.+++.++++|++..++....
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            36789999999999999999999999999 89999853                     345677888998877664320


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCCh
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVA  279 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~  279 (332)
                      ..... +.+.     .++|+||+++|..
T Consensus       212 ~~~~~-~~~~-----~~~D~Vi~AtG~~  233 (564)
T PRK12771        212 EDITL-EQLE-----GEFDAVFVAIGAQ  233 (564)
T ss_pred             CcCCH-HHHH-----hhCCEEEEeeCCC
Confidence            00111 1111     2699999999975

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.90  E-value=0.00014  Score=70.56  Aligned_cols=93  Identities=25%  Similarity=0.334  Sum_probs=73.9

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      .-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+..+         ++.+.+      ..+|+|+
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~~---------~leell------~~ADIVI  314 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQVV---------TLEDVV------ETADIFV  314 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCceec---------cHHHHH------hcCCEEE
Confidence            4579999999999999999999999999 89999888777655555665321         122222      2589999


Q ss_pred             EcCCChHHHH-HHHHHhccCCcEEEEEcCCC
Q 043260          274 ECTGVASLIS-EALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       274 d~~g~~~~~~-~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .++|+...+. ..++.++++ +.++.+|-..
T Consensus       315 ~atGt~~iI~~e~~~~MKpG-AiLINvGr~d  344 (476)
T PTZ00075        315 TATGNKDIITLEHMRRMKNN-AIVGNIGHFD  344 (476)
T ss_pred             ECCCcccccCHHHHhccCCC-cEEEEcCCCc
Confidence            9999877774 899999998 9999998764

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.89  E-value=4.1e-05  Score=74.18  Aligned_cols=184  Identities=17%  Similarity=0.148  Sum_probs=107.8

Q ss_pred             ccccceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccC
Q 043260           70 VLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCS  149 (332)
Q Consensus        70 v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G  149 (332)
                      .-|||+++.+.+|++++++.-+|+.-+      ||   +|+..+ +.|......  |...+                  +
T Consensus        91 ~~g~ea~~hl~~V~~GldS~V~GE~qI------lg---Qvk~a~-~~a~~~g~~--g~~l~------------------~  140 (423)
T PRK00045         91 HEGEEAVRHLFRVASGLDSMVLGEPQI------LG---QVKDAY-ALAQEAGTV--GTILN------------------R  140 (423)
T ss_pred             cCCHHHHHHHHHHHhhhhhhhcCChHH------HH---HHHHHH-HHHHHcCCc--hHHHH------------------H
Confidence            459999999999999988755555432      22   333211 112221111  11111                  1


Q ss_pred             CceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhC---CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEE
Q 043260          150 TMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFK---VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIG  226 (332)
Q Consensus       150 ~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~---~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~  226 (332)
                      .|++.+        ++|+.+..+.+. ...+.+++++++.....   -.++++|+|+|+|.+|.++++.++..|+.+|++
T Consensus       141 lf~~a~--------~~~k~v~~~t~i-~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v  211 (423)
T PRK00045        141 LFQKAF--------SVAKRVRTETGI-GAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITV  211 (423)
T ss_pred             HHHHHH--------HHHhhHhhhcCC-CCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEE
Confidence            244433        334444333222 22356677777633222   257899999999999999999999999878999


Q ss_pred             EcCCcchHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHH--HHHHHH-hcc--C-CcEEEEE
Q 043260          227 IDKNPCRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLI--SEALEA-TKL--G-KGKVMAI  299 (332)
Q Consensus       227 ~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~--~~~~~~-l~~--~-~G~~v~~  299 (332)
                      ++++.++.+ +++++|.+ +++.     .+.    .+..  .++|+||+|++++..+  ...++. +..  + .-.++.+
T Consensus       212 ~~r~~~ra~~la~~~g~~-~~~~-----~~~----~~~l--~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDl  279 (423)
T PRK00045        212 ANRTLERAEELAEEFGGE-AIPL-----DEL----PEAL--AEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDL  279 (423)
T ss_pred             EeCCHHHHHHHHHHcCCc-EeeH-----HHH----HHHh--ccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEe
Confidence            999988855 77788864 3322     222    2222  2589999999986433  122222 211  1 1357777


Q ss_pred             cCCCC
Q 043260          300 GAANE  304 (332)
Q Consensus       300 G~~~~  304 (332)
                      +.+.+
T Consensus       280 a~Prd  284 (423)
T PRK00045        280 AVPRD  284 (423)
T ss_pred             CCCCC
Confidence            77654

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.88  E-value=0.00012  Score=69.54  Aligned_cols=99  Identities=16%  Similarity=0.184  Sum_probs=70.5

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|++++++.++++.+. .++........+  .++    +.+...  .+|+||+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~--~~~----l~~~l~--~aDvVI~  236 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSN--AYE----IEDAVK--RADLLIG  236 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCC--HHH----HHHHHc--cCCEEEE
Confidence            34569999999999999999999999 8999999988877664 455432222221  122    333322  5899999


Q ss_pred             cCC---C--hH-HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          275 CTG---V--AS-LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       275 ~~g---~--~~-~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      +++   .  +. ...+.++.++++ +.++.++...+
T Consensus       237 a~~~~g~~~p~lit~~~l~~mk~g-~vIvDva~d~G  271 (370)
T TIGR00518       237 AVLIPGAKAPKLVSNSLVAQMKPG-AVIVDVAIDQG  271 (370)
T ss_pred             ccccCCCCCCcCcCHHHHhcCCCC-CEEEEEecCCC
Confidence            973   2  21 136788889998 99999987655

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08324 short chain dehydrogenase; Validated

Probab=97.82  E-value=0.0002  Score=73.64  Aligned_cols=140  Identities=20%  Similarity=0.234  Sum_probs=88.0

Q ss_pred             CceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEc
Q 043260          150 TMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGID  228 (332)
Q Consensus       150 ~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~  228 (332)
                      ++++|..++...++.+ +..+.+++..-..+          .....+|+++||+|+ |++|..+++.+...|+ +|++++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~  453 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD  453 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence            3667777776666666 55666666421100          122346899999997 9999999999999999 899999


Q ss_pred             CCcchHHHH-HHcCC--C-ee--eCCCCCCCchHHHHHHHhcC-CCCccEEEEcCCCh----------------------
Q 043260          229 KNPCRKDKG-EAFGM--T-DF--INPDDEPNKSISELVKEMTH-GTGVDYGFECTGVA----------------------  279 (332)
Q Consensus       229 ~~~~~~~~~-~~lga--~-~v--~~~~~~~~~~~~~~~~~~~~-~~g~d~vid~~g~~----------------------  279 (332)
                      ++.++.+.+ ++++.  . ..  .|..+  .+++.+.+.+... ..++|+||+++|..                      
T Consensus       454 r~~~~~~~~~~~l~~~~~v~~v~~Dvtd--~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~  531 (681)
T PRK08324        454 LDEEAAEAAAAELGGPDRALGVACDVTD--EAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNAT  531 (681)
T ss_pred             CCHHHHHHHHHHHhccCcEEEEEecCCC--HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhH
Confidence            998876644 33443  1 11  23333  2333333333211 12699999999821                      


Q ss_pred             ---HHHHHHHHHhcc---CCcEEEEEcCCCC
Q 043260          280 ---SLISEALEATKL---GKGKVMAIGAANE  304 (332)
Q Consensus       280 ---~~~~~~~~~l~~---~~G~~v~~G~~~~  304 (332)
                         ..++.+++.+++   + |+++++++...
T Consensus       532 g~~~l~~~~~~~l~~~~~~-g~iV~vsS~~~  561 (681)
T PRK08324        532 GHFLVAREAVRIMKAQGLG-GSIVFIASKNA  561 (681)
T ss_pred             HHHHHHHHHHHHHHhcCCC-cEEEEECCccc
Confidence               123455666666   5 89999987654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.80  E-value=0.00017  Score=66.30  Aligned_cols=99  Identities=19%  Similarity=0.194  Sum_probs=66.9

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc----CCC-eeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF----GMT-DFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l----ga~-~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ..++++||-+|+|. |.+++.+++ .|..+|+++|.++...+.+++.    +.. .+....    .+    ..... ..+
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~----~~----~~~~~-~~~  225 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL----IY----LEQPI-EGK  225 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe----cc----ccccc-CCC
Confidence            46789999999988 877776665 5766999999999887766552    221 111111    00    11112 237


Q ss_pred             ccEEEEcCCCh---HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          269 VDYGFECTGVA---SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       269 ~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ||+|+.+....   ..+..+.+.|+++ |.+++.|....
T Consensus       226 fDlVvan~~~~~l~~ll~~~~~~Lkpg-G~li~sgi~~~  263 (288)
T TIGR00406       226 ADVIVANILAEVIKELYPQFSRLVKPG-GWLILSGILET  263 (288)
T ss_pred             ceEEEEecCHHHHHHHHHHHHHHcCCC-cEEEEEeCcHh
Confidence            99999876543   3466788999998 99999887653

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.74  E-value=0.00012  Score=59.54  Aligned_cols=100  Identities=22%  Similarity=0.284  Sum_probs=65.5

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCC--eeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMT--DFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~--~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      --.+.+++|+|+|++|.+++..+...|+++|+++.|+.+|.+. +++++..  .++...     ++.+.+      ..+|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~-----~~~~~~------~~~D   77 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLE-----DLEEAL------QEAD   77 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGG-----GHCHHH------HTES
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHH-----HHHHHH------hhCC
Confidence            3468999999999999999999999999889999999988764 4566433  233332     222222      1589


Q ss_pred             EEEEcCCChHH--HHHHHHHhccCCcEEEEEcCCCC
Q 043260          271 YGFECTGVASL--ISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       271 ~vid~~g~~~~--~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      +||++++.+..  ....++...+..+.++.++.+..
T Consensus        78 ivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~  113 (135)
T PF01488_consen   78 IVINATPSGMPIITEEMLKKASKKLRLVIDLAVPRD  113 (135)
T ss_dssp             EEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-S
T ss_pred             eEEEecCCCCcccCHHHHHHHHhhhhceeccccCCC
Confidence            99999987522  12333322221147888887654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00024  Score=61.33  Aligned_cols=118  Identities=16%  Similarity=0.225  Sum_probs=82.2

Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch----HHHHHHcCCCee
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR----KDKGEAFGMTDF  245 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~----~~~~~~lga~~v  245 (332)
                      +....-++..+...|.  +.....+++|++||=+|+|. |..++-+++..|  +|+.+++.++=    ++.++.+|.+.|
T Consensus        48 pi~~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV  122 (209)
T COG2518          48 PIGCGQTISAPHMVAR--MLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENV  122 (209)
T ss_pred             cCCCCceecCcHHHHH--HHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCce
Confidence            3334444444545554  34778999999999999987 999999999887  89999988762    334567887544


Q ss_pred             eCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEE-c
Q 043260          246 INPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAI-G  300 (332)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~-G  300 (332)
                      .....   +.    -..+.....||.|+-+.+.+..-...++.|+++ |+++.- |
T Consensus       123 ~v~~g---DG----~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~g-Grlv~PvG  170 (209)
T COG2518         123 TVRHG---DG----SKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPG-GRLVIPVG  170 (209)
T ss_pred             EEEEC---Cc----ccCCCCCCCcCEEEEeeccCCCCHHHHHhcccC-CEEEEEEc
Confidence            32222   11    112223346999999888876668999999998 887754 5

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.72  E-value=0.00018  Score=63.41  Aligned_cols=80  Identities=16%  Similarity=0.290  Sum_probs=59.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCC----eeeCCCCCCCchHHHHHHHhcCCCC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMT----DFINPDDEPNKSISELVKEMTHGTG-  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~----~v~~~~~~~~~~~~~~~~~~~~~~g-  268 (332)
                      +++.++|+|+ +++|.+.++.+...|+ +|+++.|+.+|++. +.+++..    ..+|..+  .++..+.+..+....+ 
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD--~~~~~~~i~~~~~~~g~   81 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD--RAAVEAAIEALPEEFGR   81 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC--HHHHHHHHHHHHHhhCc
Confidence            4578899999 9999999999999999 99999999999975 4667732    2344444  3344445554444433 


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|+++++.|.
T Consensus        82 iDiLvNNAGl   91 (246)
T COG4221          82 IDILVNNAGL   91 (246)
T ss_pred             ccEEEecCCC
Confidence            8999999885

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.65  E-value=0.00094  Score=60.16  Aligned_cols=81  Identities=15%  Similarity=0.293  Sum_probs=57.3

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcC----CC-eee--CCCCCCCchHHHHHHH-hc
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFG----MT-DFI--NPDDEPNKSISELVKE-MT  264 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lg----a~-~v~--~~~~~~~~~~~~~~~~-~~  264 (332)
                      ..+.++||+|| +++|...+..+...|. +++.+.|+++|++.+ +++.    .. +++  |..+  +++ .+.+.+ +.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~--~~~-~~~l~~~l~   79 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSD--PEA-LERLEDELK   79 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCC--hhH-HHHHHHHHH
Confidence            46789999999 9999999999999999 999999999998754 3332    22 233  3333  233 333333 22


Q ss_pred             -CCCCccEEEEcCCCh
Q 043260          265 -HGTGVDYGFECTGVA  279 (332)
Q Consensus       265 -~~~g~d~vid~~g~~  279 (332)
                       .+..+|+.++++|-.
T Consensus        80 ~~~~~IdvLVNNAG~g   95 (265)
T COG0300          80 ERGGPIDVLVNNAGFG   95 (265)
T ss_pred             hcCCcccEEEECCCcC
Confidence             223689999999953

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=97.60  E-value=0.0032  Score=57.99  Aligned_cols=139  Identities=14%  Similarity=0.126  Sum_probs=88.0

Q ss_pred             ceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhC---CCCCCEEEEECC-ChHHHHHHHHHH-HcCCCeEE
Q 043260          151 MTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFK---VEKGSSVAVFGL-GAVGLGVMDRAR-IQGAAKII  225 (332)
Q Consensus       151 ~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~---~~~g~~vlV~G~-g~vG~~~~~la~-~~G~~~Vi  225 (332)
                      |-+|.++..+..+  .+.....++.+-+ -+.|.|- |.+...   .-..+.|+|.+| +-.++.++..++ ..+..++|
T Consensus        91 YN~Y~r~~~d~~y--~~~~e~~~~LlrP-Lf~Tsfl-l~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~v  166 (314)
T PF11017_consen   91 YNQYLRVSADPAY--DPEREDWQMLLRP-LFITSFL-LDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVV  166 (314)
T ss_pred             hhceeecCCCccc--CcchhHHHHHHHH-HHHHHHH-HHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEE
Confidence            6677777655443  1112222222222 3445553 433222   223356777777 888888888888 45555888


Q ss_pred             EEcCCcchHHHHHHcCC-CeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          226 GIDKNPCRKDKGEAFGM-TDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       226 ~~~~~~~~~~~~~~lga-~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .+++ +...+..+.+|+ |+|+.|++         +..+... ..-+++|..|+...+..+.+.++..--..+.+|...-
T Consensus       167 glTS-~~N~~Fve~lg~Yd~V~~Yd~---------i~~l~~~-~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th~  235 (314)
T PF11017_consen  167 GLTS-ARNVAFVESLGCYDEVLTYDD---------IDSLDAP-QPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATHW  235 (314)
T ss_pred             EEec-CcchhhhhccCCceEEeehhh---------hhhccCC-CCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccCc
Confidence            8864 556678899996 78888865         4444333 5689999999988888888888876234667776543

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.58  E-value=0.00078  Score=61.18  Aligned_cols=111  Identities=21%  Similarity=0.355  Sum_probs=75.8

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee----CCCCCCCchHHHHH---H
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI----NPDDEPNKSISELV---K  261 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~----~~~~~~~~~~~~~~---~  261 (332)
                      -.+++|+|+|| +++|.+++.-....|+ +++.+.+..++++..    ++.+... ++    |..+  .++..+.+   .
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~--~~~~~~~~~~~~   86 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD--EESVKKFVEWAI   86 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCC--HHHHHHHHHHHH
Confidence            46788999999 9999998888888999 888888888877655    4445433 32    2222  23333333   2


Q ss_pred             HhcCCCCccEEEEcCCCh-------------------------HHHHHHHHHhccCC-cEEEEEcCCCC-CcccCC
Q 043260          262 EMTHGTGVDYGFECTGVA-------------------------SLISEALEATKLGK-GKVMAIGAANE-AKVPLN  310 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~-G~~v~~G~~~~-~~~~~~  310 (332)
                      ... + ++|+.+++.|-.                         .....++..+++.+ |+++.+++..+ ...++.
T Consensus        87 ~~f-g-~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~  160 (282)
T KOG1205|consen   87 RHF-G-RVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFR  160 (282)
T ss_pred             Hhc-C-CCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcc
Confidence            222 2 699999998853                         12345666777765 99999999887 555554

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.0019  Score=58.74  Aligned_cols=105  Identities=16%  Similarity=0.247  Sum_probs=70.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHHHHHHh---cCCCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISELVKEM---THGTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~---~~~~g~d  270 (332)
                      .++++||+|+ |++|..+++.+...|. +|++++++.++++.+.+.+...+ .|..+  .+++.+.+.+.   .++ ..|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~~g-~id   78 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDYAE--PESIAALVAQVLELSGG-RLD   78 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccCCC--HHHHHHHHHHHHHHcCC-Ccc
Confidence            4678999998 9999999999988999 99999999888877766665433 24333  23333333322   223 689


Q ss_pred             EEEEcCCChH-------------------------HHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          271 YGFECTGVAS-------------------------LISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       271 ~vid~~g~~~-------------------------~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      ++|++.|...                         ....++..+.+. .|+++.+++..+
T Consensus        79 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~  138 (277)
T PRK05993         79 ALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILG  138 (277)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhh
Confidence            9999876310                         023455555443 278999887543

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.43  E-value=0.00091  Score=57.33  Aligned_cols=80  Identities=19%  Similarity=0.283  Sum_probs=58.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC---CeeeCCCCC-CCchHHHHHHHhcCCCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM---TDFINPDDE-PNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga---~~v~~~~~~-~~~~~~~~~~~~~~~~g~d  270 (332)
                      .|-+|||.|+ +++|+..++-...+|- +||++.|++++++.++..-.   ..+.|..+. .-..+.+++.+..+  ..+
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P--~lN   80 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYP--NLN   80 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCC--chh
Confidence            5789999976 9999999999999998 99999999999998877542   345555540 11124455544443  479


Q ss_pred             EEEEcCCC
Q 043260          271 YGFECTGV  278 (332)
Q Consensus       271 ~vid~~g~  278 (332)
                      ++++++|-
T Consensus        81 vliNNAGI   88 (245)
T COG3967          81 VLINNAGI   88 (245)
T ss_pred             eeeecccc
Confidence            99999884

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.41  E-value=0.0028  Score=55.88  Aligned_cols=107  Identities=18%  Similarity=0.259  Sum_probs=68.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc---CCCeeeCCCCCCCchHHHHHHHhcC-CCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF---GMTDFINPDDEPNKSISELVKEMTH-GTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l---ga~~v~~~~~~~~~~~~~~~~~~~~-~~g~  269 (332)
                      ++++++|+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +++   +....+..+-...++..+.+.+... -.++
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   82 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI   82 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4689999998 9999999999999999 999999988877554 222   2222332221112333333332211 1258


Q ss_pred             cEEEEcCCCh-----------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          270 DYGFECTGVA-----------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       270 d~vid~~g~~-----------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      |.++.+.+..                       ..++..+..++++ |+++.+++..+
T Consensus        83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~~~  139 (238)
T PRK05786         83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEG-SSIVLVSSMSG  139 (238)
T ss_pred             CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CEEEEEecchh
Confidence            9999988742                       1134555666777 89999987643

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.40  E-value=0.003  Score=52.53  Aligned_cols=111  Identities=23%  Similarity=0.329  Sum_probs=70.4

Q ss_pred             HHHHHhhC-CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhc
Q 043260          186 GAAWKEFK-VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       186 ~al~~~~~-~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      .++.+..+ +-.|++++|+|-|-+|...++.++.+|+ +|++++.++.+.-.+..-|.+ +.        .+.    +..
T Consensus        11 d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~-v~--------~~~----~a~   76 (162)
T PF00670_consen   11 DGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE-VM--------TLE----EAL   76 (162)
T ss_dssp             HHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E-EE---------HH----HHT
T ss_pred             HHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE-ec--------CHH----HHH
Confidence            33444434 4688999999999999999999999999 999999998776666556653 22        122    222


Q ss_pred             CCCCccEEEEcCCChHHH-HHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc
Q 043260          265 HGTGVDYGFECTGVASLI-SEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL  316 (332)
Q Consensus       265 ~~~g~d~vid~~g~~~~~-~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~  316 (332)
                        ..+|++|.++|..+.+ .+-++.++++ ..+..+|..   ..+++...+..
T Consensus        77 --~~adi~vtaTG~~~vi~~e~~~~mkdg-ail~n~Gh~---d~Eid~~~L~~  123 (162)
T PF00670_consen   77 --RDADIFVTATGNKDVITGEHFRQMKDG-AILANAGHF---DVEIDVDALEA  123 (162)
T ss_dssp             --TT-SEEEE-SSSSSSB-HHHHHHS-TT-EEEEESSSS---TTSBTHHHHHT
T ss_pred             --hhCCEEEECCCCccccCHHHHHHhcCC-eEEeccCcC---ceeEeeccccc
Confidence              2479999999987654 5778889886 555555653   36677666554

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.39  E-value=0.0024  Score=55.27  Aligned_cols=103  Identities=20%  Similarity=0.363  Sum_probs=71.1

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHH----HcC-CCeeeCCCCCCCchHHHHHHHh
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGE----AFG-MTDFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~----~lg-a~~v~~~~~~~~~~~~~~~~~~  263 (332)
                      ....+.++++||.+|+|. |.+++.+++..+. .+|+.+|.+++..+.++    ++| .+.+....    .+..+.+...
T Consensus        34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~----~d~~~~l~~~  108 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK----GEAPEILFTI  108 (198)
T ss_pred             HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE----echhhhHhhc
Confidence            456788999999999988 8888899887652 48999999998877654    456 33322111    1222223332


Q ss_pred             cCCCCccEEEEcCCC---hHHHHHHHHHhccCCcEEEEEc
Q 043260          264 THGTGVDYGFECTGV---ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       264 ~~~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      .  ..+|.||...+.   ...+..+.+.|+++ |+++..-
T Consensus       109 ~--~~~D~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~  145 (198)
T PRK00377        109 N--EKFDRIFIGGGSEKLKEIISASWEIIKKG-GRIVIDA  145 (198)
T ss_pred             C--CCCCEEEECCCcccHHHHHHHHHHHcCCC-cEEEEEe
Confidence            2  269999986553   34678888999998 9988633

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.34  E-value=0.0019  Score=59.04  Aligned_cols=139  Identities=18%  Similarity=0.274  Sum_probs=84.1

Q ss_pred             ceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHH-hhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          151 MTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK-EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       151 ~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~-~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      |.+|..-.....+++.+++.|-.    .....|++- +.. ....++|++||=+|+|. |.+++..++ +|+.+|+++|.
T Consensus       121 w~~~~~~~~~~~i~lDPGlAFGT----G~HpTT~lc-L~~Le~~~~~g~~vlDvGcGS-GILaIAa~k-LGA~~v~g~Di  193 (300)
T COG2264         121 WREYPEPSDELNIELDPGLAFGT----GTHPTTSLC-LEALEKLLKKGKTVLDVGCGS-GILAIAAAK-LGAKKVVGVDI  193 (300)
T ss_pred             CccCCCCCCceEEEEccccccCC----CCChhHHHH-HHHHHHhhcCCCEEEEecCCh-hHHHHHHHH-cCCceEEEecC
Confidence            55543332467778877775532    223334432 221 22457999999999976 776665555 78878999999


Q ss_pred             CcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCCh---HHHHHHHHHhccCCcEEEEEcCC
Q 043260          230 NPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVA---SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       230 ~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ++-..+.+++    -+.........   ...   ..... +..||+|+-+.=..   ....+....++++ |++++.|..
T Consensus       194 Dp~AV~aa~eNa~~N~v~~~~~~~~---~~~---~~~~~-~~~~DvIVANILA~vl~~La~~~~~~lkpg-g~lIlSGIl  265 (300)
T COG2264         194 DPQAVEAARENARLNGVELLVQAKG---FLL---LEVPE-NGPFDVIVANILAEVLVELAPDIKRLLKPG-GRLILSGIL  265 (300)
T ss_pred             CHHHHHHHHHHHHHcCCchhhhccc---ccc---hhhcc-cCcccEEEehhhHHHHHHHHHHHHHHcCCC-ceEEEEeeh
Confidence            9876665543    23321100000   000   11111 23799999877442   2346788899998 999999987


Q ss_pred             CC
Q 043260          303 NE  304 (332)
Q Consensus       303 ~~  304 (332)
                      ..
T Consensus       266 ~~  267 (300)
T COG2264         266 ED  267 (300)
T ss_pred             Hh
Confidence            65

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.34  E-value=0.0014  Score=62.69  Aligned_cols=109  Identities=12%  Similarity=0.122  Sum_probs=74.8

Q ss_pred             chhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHH
Q 043260          180 GYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISEL  259 (332)
Q Consensus       180 ~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~  259 (332)
                      +-...+..+.+..++++|++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++.....-+....   .++   
T Consensus       151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~-G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~---~D~---  222 (383)
T PRK11705        151 AQEAKLDLICRKLQLKPGMRVLDIGCGW-GGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRL---QDY---  222 (383)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCCc-cHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEE---Cch---
Confidence            3334455565777889999999999964 7778888888888 9999999999999887653221111111   111   


Q ss_pred             HHHhcCCCCccEEEEc-----CCC---hHHHHHHHHHhccCCcEEEEEc
Q 043260          260 VKEMTHGTGVDYGFEC-----TGV---ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       260 ~~~~~~~~g~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                       .++ .+ .||.|+..     ++.   ...+..+.+.|+|+ |.+++..
T Consensus       223 -~~l-~~-~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG-G~lvl~~  267 (383)
T PRK11705        223 -RDL-NG-QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD-GLFLLHT  267 (383)
T ss_pred             -hhc-CC-CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence             122 23 69999753     333   24678899999998 9988753

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.31  E-value=0.003  Score=54.47  Aligned_cols=111  Identities=14%  Similarity=0.250  Sum_probs=74.0

Q ss_pred             CCCEEEEECC--ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCC-eeeCCCCC-CCchHHHHHHHhcCCCCcc
Q 043260          196 KGSSVAVFGL--GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMT-DFINPDDE-PNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~--g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~-~v~~~~~~-~~~~~~~~~~~~~~~~g~d  270 (332)
                      ..+.|||+|+  |++|.+++.-...-|+ .|+++.++-++.+.+. ++|.. +-+|..++ ....+...+++.++| ..|
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~G-kld   83 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDG-KLD   83 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCC-ceE
Confidence            4567999975  9999999998889999 9999999988877554 77743 33444431 222333455555555 789


Q ss_pred             EEEEcCCCh----------HHHHHH----------------HHHhccCCcEEEEEcCCCC-CcccC
Q 043260          271 YGFECTGVA----------SLISEA----------------LEATKLGKGKVMAIGAANE-AKVPL  309 (332)
Q Consensus       271 ~vid~~g~~----------~~~~~~----------------~~~l~~~~G~~v~~G~~~~-~~~~~  309 (332)
                      +.++++|-+          +..+++                ...++.. |++|.+|+..+ .+++|
T Consensus        84 ~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaK-GtIVnvgSl~~~vpfpf  148 (289)
T KOG1209|consen   84 LLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAK-GTIVNVGSLAGVVPFPF  148 (289)
T ss_pred             EEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHcc-ceEEEecceeEEeccch
Confidence            999988853          111111                2244555 99999998875 33433

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.005  Score=55.71  Aligned_cols=78  Identities=18%  Similarity=0.316  Sum_probs=54.3

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHHHHHHhc-CCCCccEEEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISELVKEMT-HGTGVDYGFE  274 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~-~~~g~d~vid  274 (332)
                      +++||+|+ |++|..+++.+...|+ +|++++++.++.+.+.+.+...+ .|..+  .+++.+.+.... ...++|++|+
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~vi~   78 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVND--GAALARLAEELEAEHGGLDVLIN   78 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEEEE
Confidence            47899998 9999999999999998 99999998887776666555433 34433  233333333321 1126899999


Q ss_pred             cCCC
Q 043260          275 CTGV  278 (332)
Q Consensus       275 ~~g~  278 (332)
                      +.|.
T Consensus        79 ~ag~   82 (274)
T PRK05693         79 NAGY   82 (274)
T ss_pred             CCCC
Confidence            9983

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.27  E-value=0.0052  Score=52.62  Aligned_cols=103  Identities=17%  Similarity=0.149  Sum_probs=65.3

Q ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHHHHHHhcCCCC
Q 043260          191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ...+++|++||.+|+|.-+. +..+++.. +..+|+++|.++.+    ...+...+ .+..+   ....+.+.+..+..+
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~-~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~---~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGW-SQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTD---EEVLNKIRERVGDDK   98 (188)
T ss_pred             hcccCCCCEEEEecCCCCHH-HHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCC---hhHHHHHHHHhCCCC
Confidence            44578999999999977444 44444443 44489999998864    11233322 12222   333344555555558


Q ss_pred             ccEEEEcC-----CC------------hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          269 VDYGFECT-----GV------------ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       269 ~d~vid~~-----g~------------~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +|+|+...     |.            ...+..+.+.|+++ |++++....
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~~~  148 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKVFQ  148 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEEcc
Confidence            99999632     21            34678899999998 999986544

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.25  E-value=0.0034  Score=53.24  Aligned_cols=105  Identities=18%  Similarity=0.269  Sum_probs=73.8

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCeeeCCCCCCCchHHHHHHHhcC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      ...++++|+.++=+|+|. |...++++...-..+|+++++++++.+..    +++|.+-+....    .+..+.+.++  
T Consensus        28 s~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~----g~Ap~~L~~~--  100 (187)
T COG2242          28 SKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE----GDAPEALPDL--  100 (187)
T ss_pred             HhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe----ccchHhhcCC--
Confidence            455889999888889866 66777888555556999999999988765    558876332222    1122333332  


Q ss_pred             CCCccEEEEcCCC--hHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          266 GTGVDYGFECTGV--ASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       266 ~~g~d~vid~~g~--~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                       ..+|.+|---|.  +..++.+++.|+++ |++|.--..-
T Consensus       101 -~~~daiFIGGg~~i~~ile~~~~~l~~g-grlV~naitl  138 (187)
T COG2242         101 -PSPDAIFIGGGGNIEEILEAAWERLKPG-GRLVANAITL  138 (187)
T ss_pred             -CCCCEEEECCCCCHHHHHHHHHHHcCcC-CeEEEEeecH
Confidence             258999975553  35688999999998 9999887665

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.22  E-value=0.0038  Score=58.17  Aligned_cols=101  Identities=19%  Similarity=0.195  Sum_probs=71.6

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHH----HcCCCeeeCCCCCCCchHHHHHHHhc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGE----AFGMTDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~----~lga~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      +..+++++++||.+|+|. |..++.+++..+. ..|+.++.+++..+.++    +.|.+.+....    .+..+..   .
T Consensus        74 ~~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~----gD~~~~~---~  145 (322)
T PRK13943         74 EWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC----GDGYYGV---P  145 (322)
T ss_pred             HhcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe----CChhhcc---c
Confidence            556788999999999984 9999999988763 36999999988766554    46765433222    1221111   1


Q ss_pred             CCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEE
Q 043260          265 HGTGVDYGFECTGVASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       265 ~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      ....||+|+.+.+........++.|+++ |+++..
T Consensus       146 ~~~~fD~Ii~~~g~~~ip~~~~~~Lkpg-G~Lvv~  179 (322)
T PRK13943        146 EFAPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP  179 (322)
T ss_pred             ccCCccEEEECCchHHhHHHHHHhcCCC-CEEEEE
Confidence            1236999999988766667889999998 987763

>PRK06182 short chain dehydrogenase; Validated

Probab=97.17  E-value=0.004  Score=56.35  Aligned_cols=80  Identities=18%  Similarity=0.267  Sum_probs=55.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHHHHHHhcC-CCCccEE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISELVKEMTH-GTGVDYG  272 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~-~~g~d~v  272 (332)
                      ++++++|+|+ |++|..+++.+...|. +|+++++++++++.+.+.+...+ .|..+  .+++.+.+.+... ..++|++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~~~id~l   78 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTD--EASIKAAVDTIIAEEGRIDVL   78 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEE
Confidence            3678999998 9999999999988999 99999998887765555454332 23333  2333333333211 1268999


Q ss_pred             EEcCCC
Q 043260          273 FECTGV  278 (332)
Q Consensus       273 id~~g~  278 (332)
                      |++.|.
T Consensus        79 i~~ag~   84 (273)
T PRK06182         79 VNNAGY   84 (273)
T ss_pred             EECCCc
Confidence            999884

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.11  E-value=0.0038  Score=60.24  Aligned_cols=99  Identities=11%  Similarity=0.074  Sum_probs=66.5

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      --.+.+++|+|+|.+|.+++..+...|+.+|+++.++.+|.+ ++.+++...++..     +    .+.+...  .+|+|
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~-----~----~l~~~l~--~aDiV  246 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYL-----S----ELPQLIK--KADII  246 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecH-----H----HHHHHhc--cCCEE
Confidence            346789999999999999999999999879999999987755 4555652223222     1    2233222  48999


Q ss_pred             EEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          273 FECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       273 id~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      |.|++.+..+-. .+.+....=.++.++.|.+
T Consensus       247 I~aT~a~~~vi~-~~~~~~~~~~~iDLavPRd  277 (414)
T PRK13940        247 IAAVNVLEYIVT-CKYVGDKPRVFIDISIPQA  277 (414)
T ss_pred             EECcCCCCeeEC-HHHhCCCCeEEEEeCCCCC
Confidence            999998744321 1222221035788888865

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.06  E-value=0.0096  Score=52.13  Aligned_cols=101  Identities=20%  Similarity=0.277  Sum_probs=69.5

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHH----cCCCe--eeCCCCCCCchHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEA----FGMTD--FINPDDEPNKSISELV  260 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~~  260 (332)
                      +....++++|++||-+|+|. |..+..+++..+. .+|+.++.+++-.+.+++    .|.+.  ++..+.   .      
T Consensus        68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~---~------  137 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG---T------  137 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc---c------
Confidence            34667889999999999876 7777788877653 389999999887765543    45432  222211   0      


Q ss_pred             HHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEE
Q 043260          261 KEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      ........||+|+-............+.|+++ |+++..
T Consensus       138 ~~~~~~~~fD~I~~~~~~~~~~~~l~~~Lkpg-G~lvi~  175 (212)
T PRK13942        138 LGYEENAPYDRIYVTAAGPDIPKPLIEQLKDG-GIMVIP  175 (212)
T ss_pred             cCCCcCCCcCEEEECCCcccchHHHHHhhCCC-cEEEEE
Confidence            01112336999987666555667889999998 998764

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.05  E-value=0.0046  Score=56.84  Aligned_cols=134  Identities=20%  Similarity=0.290  Sum_probs=76.3

Q ss_pred             ceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHH-hhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          151 MTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK-EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       151 ~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~-~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      |.+|-.-+...++.+++++.|-.+.    ...|.. ++.. ..-..+|++||=+|+|. |.+++..++ +|+++|+++|.
T Consensus       120 w~~~~~~~~~~~I~idPg~AFGTG~----H~TT~l-cl~~l~~~~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~Di  192 (295)
T PF06325_consen  120 WEEYPEPPDEIVIEIDPGMAFGTGH----HPTTRL-CLELLEKYVKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAIDI  192 (295)
T ss_dssp             T----SSTTSEEEEESTTSSS-SSH----CHHHHH-HHHHHHHHSSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEES
T ss_pred             CcccCCCCCcEEEEECCCCcccCCC----CHHHHH-HHHHHHHhccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEecC
Confidence            5555222445677777777554332    222222 1211 12267899999999865 665555554 68889999999


Q ss_pred             CcchHHHHHH----cCCC-ee-eCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChH---HHHHHHHHhccCCcEEEEEc
Q 043260          230 NPCRKDKGEA----FGMT-DF-INPDDEPNKSISELVKEMTHGTGVDYGFECTGVAS---LISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       230 ~~~~~~~~~~----lga~-~v-~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~---~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ++...+.+++    -|.. .+ +....    +.       . ...||+|+-+.-...   ......+.++++ |.+++.|
T Consensus       193 Dp~Av~~a~~N~~~N~~~~~~~v~~~~----~~-------~-~~~~dlvvANI~~~vL~~l~~~~~~~l~~~-G~lIlSG  259 (295)
T PF06325_consen  193 DPLAVEAARENAELNGVEDRIEVSLSE----DL-------V-EGKFDLVVANILADVLLELAPDIASLLKPG-GYLILSG  259 (295)
T ss_dssp             SCHHHHHHHHHHHHTT-TTCEEESCTS----CT-------C-CS-EEEEEEES-HHHHHHHHHHCHHHEEEE-EEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCeeEEEEEec----cc-------c-cccCCEEEECCCHHHHHHHHHHHHHhhCCC-CEEEEcc
Confidence            9987665543    2322 22 21111    11       1 147999998887642   234566788998 9999999


Q ss_pred             CCCC
Q 043260          301 AANE  304 (332)
Q Consensus       301 ~~~~  304 (332)
                      ....
T Consensus       260 Il~~  263 (295)
T PF06325_consen  260 ILEE  263 (295)
T ss_dssp             EEGG
T ss_pred             ccHH
Confidence            8775

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.0043  Score=57.05  Aligned_cols=80  Identities=20%  Similarity=0.302  Sum_probs=54.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCC-ee----eCCCCCCCchHHHHHHHhcCC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMT-DF----INPDDEPNKSISELVKEMTHG-T  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~-~v----~~~~~~~~~~~~~~~~~~~~~-~  267 (332)
                      +|+++||+|+ |++|..+++.+...|+ +|++++++.++++. .++++.. .+    .|..+  .++..+.+.+.... .
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTD--LAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCC--HHHHHHHHHHHHHHcC
Confidence            5789999998 9999999999999999 89999998887654 3455421 11    23332  23333333322111 2


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      .+|++|++.|.
T Consensus        85 ~id~vI~nAG~   95 (296)
T PRK05872         85 GIDVVVANAGI   95 (296)
T ss_pred             CCCEEEECCCc
Confidence            58999999984

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.04  E-value=0.0067  Score=60.45  Aligned_cols=105  Identities=12%  Similarity=0.188  Sum_probs=68.1

Q ss_pred             HhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH---------cCCC-----eee--CCCCCC
Q 043260          190 KEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA---------FGMT-----DFI--NPDDEP  252 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~---------lga~-----~v~--~~~~~~  252 (332)
                      +..+.+.|+++||+|+ |.+|..+++.+...|. +|++++++.++.+.+.+         .|..     .++  |..+  
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD--  149 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK--  149 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC--
Confidence            4556788999999998 9999999999998998 99999998887653321         1211     122  2222  


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCCChH---------------HHHHHHHHhccC-CcEEEEEcCCC
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTGVAS---------------LISEALEATKLG-KGKVMAIGAAN  303 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g~~~---------------~~~~~~~~l~~~-~G~~v~~G~~~  303 (332)
                       .   +.+.+..+  ++|+||+++|...               ....+++.+... .++||+++..+
T Consensus       150 -~---esI~~aLg--giDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig  210 (576)
T PLN03209        150 -P---DQIGPALG--NASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG  210 (576)
T ss_pred             -H---HHHHHHhc--CCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence             1   22333333  5899999987531               122334444333 26899998765

>PRK12742 oxidoreductase; Provisional

Probab=97.03  E-value=0.015  Score=51.15  Aligned_cols=102  Identities=22%  Similarity=0.322  Sum_probs=64.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHH-HHHHcCCCee-eCCCCCCCchHHHHHHHhcCCCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK-NPCRKD-KGEAFGMTDF-INPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~-~~~~~~-~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      +++++||+|+ |++|..+++.+...|+ +|+.+.+ ++++.+ +..+++...+ .|..+  .+++.+.+.+.   .++|+
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~--~~~~~~~~~~~---~~id~   78 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSAD--RDAVIDVVRKS---GALDI   78 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCC--HHHHHHHHHHh---CCCcE
Confidence            4789999998 9999999999999999 7877654 344443 3355565433 23322  22333333321   25899


Q ss_pred             EEEcCCChH-------------------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          272 GFECTGVAS-------------------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       272 vid~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      +|+++|...                         ....++..++++ |+++.+++...
T Consensus        79 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-g~iv~isS~~~  135 (237)
T PRK12742         79 LVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEG-GRIIIIGSVNG  135 (237)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcC-CeEEEEecccc
Confidence            999987420                         012334455666 89999887553

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.0046  Score=54.19  Aligned_cols=77  Identities=19%  Similarity=0.349  Sum_probs=53.7

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee--CCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI--NPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~--~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      ++++|+|+ |++|...++.+...|. +|+++++++++.+.+++++...++  |..+  .+++.+.+.++.. .++|+||.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~-~~id~vi~   77 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMND--PASLDQLLQRLQG-QRFDLLFV   77 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCC--HHHHHHHHHHhhc-CCCCEEEE
Confidence            46899998 9999999999888999 999999988877666555432222  3322  2334444444433 37999999


Q ss_pred             cCCC
Q 043260          275 CTGV  278 (332)
Q Consensus       275 ~~g~  278 (332)
                      ++|.
T Consensus        78 ~ag~   81 (225)
T PRK08177         78 NAGI   81 (225)
T ss_pred             cCcc
Confidence            8764

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=96.97  E-value=0.00017  Score=57.49  Aligned_cols=50  Identities=28%  Similarity=0.474  Sum_probs=36.5

Q ss_pred             cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC--ChHHHHHHHHHhccCCcEEEEEcC
Q 043260          240 FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG--VASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       240 lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g--~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      |||++++++++   .++       +...++|+|||++|  ....+..++++| ++ |+++.++.
T Consensus         1 LGAd~vidy~~---~~~-------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~-G~~v~i~~   52 (127)
T PF13602_consen    1 LGADEVIDYRD---TDF-------AGPGGVDVVIDTVGQTGESLLDASRKLL-PG-GRVVSIGG   52 (127)
T ss_dssp             CT-SEEEETTC---SHH-------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EE-EEEEEE-S
T ss_pred             CCcCEEecCCC---ccc-------cCCCCceEEEECCCCccHHHHHHHHHHC-CC-CEEEEECC
Confidence            69999999987   655       33558999999999  654447777888 98 99999984

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.96  E-value=0.005  Score=47.55  Aligned_cols=92  Identities=21%  Similarity=0.304  Sum_probs=62.8

Q ss_pred             CCCEEEEECCChHHHHHHHHHHH-cCCCeEEEEcCCcchHHHHHHc----CC-Cee-eCCCCCCCchHHHHHHHhcCCCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARI-QGAAKIIGIDKNPCRKDKGEAF----GM-TDF-INPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~-~G~~~Vi~~~~~~~~~~~~~~l----ga-~~v-~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      |+++||-+|+|. |..+..+++. .+. +|+++|.+++-++.+++.    +. +.+ +...+     + .  ........
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d-----~-~--~~~~~~~~   70 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQGD-----A-E--FDPDFLEP   70 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESC-----C-H--GGTTTSSC
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECc-----c-c--cCcccCCC
Confidence            688999999977 7888888884 566 999999999888776542    22 222 22221     1 1  11222336


Q ss_pred             ccEEEEcC-CCh---------HHHHHHHHHhccCCcEEEE
Q 043260          269 VDYGFECT-GVA---------SLISEALEATKLGKGKVMA  298 (332)
Q Consensus       269 ~d~vid~~-g~~---------~~~~~~~~~l~~~~G~~v~  298 (332)
                      ||+|+... ...         ..++.+.+.|+|+ |++++
T Consensus        71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~lvi  109 (112)
T PF12847_consen   71 FDLVICSGFTLHFLLPLDERRRVLERIRRLLKPG-GRLVI  109 (112)
T ss_dssp             EEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             CCEEEECCCccccccchhHHHHHHHHHHHhcCCC-cEEEE
Confidence            99999977 221         2378899999998 99886

...

>PRK04148 hypothetical protein; Provisional

Probab=96.96  E-value=0.0042  Score=50.08  Aligned_cols=100  Identities=17%  Similarity=0.194  Sum_probs=68.3

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      ...++.+++++|.| .|...+..+...|. +|+++|.+++..+.+++.+.+.+.+.--  ..++  .+     -.++|+|
T Consensus        13 ~~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf--~p~~--~~-----y~~a~li   81 (134)
T PRK04148         13 EKGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLF--NPNL--EI-----YKNAKLI   81 (134)
T ss_pred             ccccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCC--CCCH--HH-----HhcCCEE
Confidence            33456889999999 78766666667898 9999999999999999888755543221  0111  11     1268999


Q ss_pred             EEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          273 FECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       273 id~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ...-..++....+++..++-+..+++.=..+
T Consensus        82 ysirpp~el~~~~~~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         82 YSIRPPRDLQPFILELAKKINVPLIIKPLSG  112 (134)
T ss_pred             EEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            9988887666666666666534455444333

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.95  E-value=0.011  Score=56.55  Aligned_cols=98  Identities=20%  Similarity=0.213  Sum_probs=70.6

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      -.+.++||+|+|-+|.+++..+...|..+|++..|+.+|.+ +++++|+..+ ..     ++    +.....  .+|+||
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~-~l-----~e----l~~~l~--~~DvVi  243 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAV-AL-----EE----LLEALA--EADVVI  243 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeee-cH-----HH----HHHhhh--hCCEEE
Confidence            47789999999999999999999999889999999988865 7788995332 22     11    222222  489999


Q ss_pred             EcCCChHHH---HHHHHHhccCCc-EEEEEcCCCC
Q 043260          274 ECTGVASLI---SEALEATKLGKG-KVMAIGAANE  304 (332)
Q Consensus       274 d~~g~~~~~---~~~~~~l~~~~G-~~v~~G~~~~  304 (332)
                      .+++.+..+   ....+.++.... .++++++|..
T Consensus       244 ssTsa~~~ii~~~~ve~a~~~r~~~livDiavPRd  278 (414)
T COG0373         244 SSTSAPHPIITREMVERALKIRKRLLIVDIAVPRD  278 (414)
T ss_pred             EecCCCccccCHHHHHHHHhcccCeEEEEecCCCC
Confidence            999986432   344444444323 5788898876

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.013  Score=51.46  Aligned_cols=82  Identities=15%  Similarity=0.201  Sum_probs=52.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCC---CeeeCCCCCCCchHHHHHHHhcC-CCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGM---TDFINPDDEPNKSISELVKEMTH-GTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga---~~v~~~~~~~~~~~~~~~~~~~~-~~g~  269 (332)
                      ++.+++|+|+ |.+|..+++.+...|. +|+++++++++.+.+ +++..   -+.+..+-....++.+.+.+... -.++
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   83 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL   83 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999998 9999999998888899 899999988766533 33421   12221111112344443433211 1268


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |+||++.+.
T Consensus        84 d~vi~~ag~   92 (237)
T PRK07326         84 DVLIANAGV   92 (237)
T ss_pred             CEEEECCCC
Confidence            999998764

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.92  E-value=0.017  Score=50.29  Aligned_cols=100  Identities=13%  Similarity=0.104  Sum_probs=67.9

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHH----HcCCC---eeeCCCCCCCchHHHHH
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGE----AFGMT---DFINPDDEPNKSISELV  260 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~----~lga~---~v~~~~~~~~~~~~~~~  260 (332)
                      .+...++++++||-+|+|. |..+..+++..+ ..+|+.++.+++-.+.++    +.+..   .++..+.      .+. 
T Consensus        65 ~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~------~~~-  136 (205)
T PRK13944         65 CELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG------KRG-  136 (205)
T ss_pred             HHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc------ccC-
Confidence            3566788999999999876 777777777764 238999999987666554    34532   2332221      111 


Q ss_pred             HHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEE
Q 043260          261 KEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                        +.....||+|+-+.........+.+.|+++ |++++.
T Consensus       137 --~~~~~~fD~Ii~~~~~~~~~~~l~~~L~~g-G~lvi~  172 (205)
T PRK13944        137 --LEKHAPFDAIIVTAAASTIPSALVRQLKDG-GVLVIP  172 (205)
T ss_pred             --CccCCCccEEEEccCcchhhHHHHHhcCcC-cEEEEE
Confidence              111237999998777655667888999998 998763

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.92  E-value=0.014  Score=50.12  Aligned_cols=99  Identities=18%  Similarity=0.175  Sum_probs=63.9

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCCeeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMTDFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      .++++++||-+|+|. |..+..+++.....+|+.+|.+++..+.++    +.+.+.+ ....   .+.    .+......
T Consensus        42 ~l~~g~~VLDiGcGt-G~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i-~~~~---~d~----~~~~~~~~  112 (187)
T PRK00107         42 YLPGGERVLDVGSGA-GFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNV-TVVH---GRA----EEFGQEEK  112 (187)
T ss_pred             hcCCCCeEEEEcCCC-CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCE-EEEe---ccH----hhCCCCCC
Confidence            345689999999865 666666666554349999999988776554    3555432 1111   111    11222337


Q ss_pred             ccEEEEcCCC--hHHHHHHHHHhccCCcEEEEEcC
Q 043260          269 VDYGFECTGV--ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       269 ~d~vid~~g~--~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      ||+|+.....  +..+..+.+.|+++ |+++++-.
T Consensus       113 fDlV~~~~~~~~~~~l~~~~~~LkpG-G~lv~~~~  146 (187)
T PRK00107        113 FDVVTSRAVASLSDLVELCLPLLKPG-GRFLALKG  146 (187)
T ss_pred             ccEEEEccccCHHHHHHHHHHhcCCC-eEEEEEeC
Confidence            9999975332  25678899999998 99888743

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.92  E-value=0.0082  Score=50.58  Aligned_cols=97  Identities=19%  Similarity=0.213  Sum_probs=64.8

Q ss_pred             hhcccchhhhHHHHHHhhCCCCCCEEEEECCCh-HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          175 GFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGA-VGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       175 a~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~-vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      ...|+....+...+.+...--.|.+++|+|+|. +|..++..++..|+ +|+++.++.+                     
T Consensus        22 ~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~---------------------   79 (168)
T cd01080          22 GFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTK---------------------   79 (168)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCch---------------------
Confidence            444544444444343333346889999999986 59989999999999 8888876521                     


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                       ++.+.+    .  .+|+||.+++.+..+..  +.++++ -.++.++.+.
T Consensus        80 -~l~~~l----~--~aDiVIsat~~~~ii~~--~~~~~~-~viIDla~pr  119 (168)
T cd01080          80 -NLKEHT----K--QADIVIVAVGKPGLVKG--DMVKPG-AVVIDVGINR  119 (168)
T ss_pred             -hHHHHH----h--hCCEEEEcCCCCceecH--HHccCC-eEEEEccCCC
Confidence             122222    1  48999999998654332  356766 7888888876

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.89  E-value=0.018  Score=48.59  Aligned_cols=95  Identities=21%  Similarity=0.318  Sum_probs=64.7

Q ss_pred             EEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCC
Q 043260          200 VAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       200 vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~  278 (332)
                      |+|+|+ |.+|..+++.+...|. +|+++.|++++.+.  ..+.+.+ ..+-   .+. +.+.+...  ++|.||.+.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~~~-~~d~---~d~-~~~~~al~--~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVEII-QGDL---FDP-DSVKAALK--GADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEEEE-ESCT---TCH-HHHHHHHT--TSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--ccccccc-eeee---hhh-hhhhhhhh--hcchhhhhhhh
Confidence            689998 9999999999999998 99999999998776  3344333 2222   222 22333222  69999999984


Q ss_pred             ----hHHHHHHHHHhccCC-cEEEEEcCCCC
Q 043260          279 ----ASLISEALEATKLGK-GKVMAIGAANE  304 (332)
Q Consensus       279 ----~~~~~~~~~~l~~~~-G~~v~~G~~~~  304 (332)
                          .+.....++.++..+ .+++.++..+.
T Consensus        71 ~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~~  101 (183)
T PF13460_consen   71 PPKDVDAAKNIIEAAKKAGVKRVVYLSSAGV  101 (183)
T ss_dssp             TTTHHHHHHHHHHHHHHTTSSEEEEEEETTG
T ss_pred             hcccccccccccccccccccccceeeecccc
Confidence                234556666665541 37777765543

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.88  E-value=0.0092  Score=52.55  Aligned_cols=96  Identities=20%  Similarity=0.188  Sum_probs=65.5

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe--eeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD--FINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~--v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      -+|.+||=+|+|+ |++...+|+ +|+ +|+++|.+++-.+.++.-....  -+++..    ...+++...  +..||+|
T Consensus        58 l~g~~vLDvGCGg-G~Lse~mAr-~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~----~~~edl~~~--~~~FDvV  128 (243)
T COG2227          58 LPGLRVLDVGCGG-GILSEPLAR-LGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQ----ATVEDLASA--GGQFDVV  128 (243)
T ss_pred             CCCCeEEEecCCc-cHhhHHHHH-CCC-eeEEecCChHHHHHHHHhhhhccccccchh----hhHHHHHhc--CCCccEE
Confidence            5889999999976 677766666 777 9999999999888776422211  144542    223333322  2479999


Q ss_pred             EE-----cCCChH-HHHHHHHHhccCCcEEEEEc
Q 043260          273 FE-----CTGVAS-LISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       273 id-----~~g~~~-~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ++     -+.+++ .+..+.+.++|+ |.+++-=
T Consensus       129 ~cmEVlEHv~dp~~~~~~c~~lvkP~-G~lf~ST  161 (243)
T COG2227         129 TCMEVLEHVPDPESFLRACAKLVKPG-GILFLST  161 (243)
T ss_pred             EEhhHHHccCCHHHHHHHHHHHcCCC-cEEEEec
Confidence            87     355554 467899999998 8776543

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.013  Score=51.78  Aligned_cols=80  Identities=20%  Similarity=0.209  Sum_probs=51.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCC-eee--CCCCCCCchHHHHHHHhcCC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMT-DFI--NPDDEPNKSISELVKEMTHG-  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~-~v~--~~~~~~~~~~~~~~~~~~~~-  266 (332)
                      ++++++|+|+ |++|..++..+...|+ +|+++++++++.+..    ++.+.. .++  |..+  .+++.+.+.+.... 
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   82 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD--PASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4788999998 9999999999999999 899998887765432    223433 222  3332  23333222222111 


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      .++|++|.++|.
T Consensus        83 ~~id~vi~~ag~   94 (250)
T PRK12939         83 GGLDGLVNNAGI   94 (250)
T ss_pred             CCCCEEEECCCC
Confidence            268999999885

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.87  E-value=0.0084  Score=50.98  Aligned_cols=46  Identities=30%  Similarity=0.691  Sum_probs=38.2

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG  241 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg  241 (332)
                      -.|++|.|+|.|.+|..++++++.+|+ +|++.+++....+...+.+
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTT
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccc
Confidence            468999999999999999999999999 9999999887665344443

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=96.86  E-value=0.021  Score=50.34  Aligned_cols=99  Identities=15%  Similarity=0.125  Sum_probs=66.0

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC-eeeCCCCCCCchHHHHHHHhc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT-DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~-~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      ....++++++||-.|+|. |..+..+++. +..+|+++|.+++..+.+++    .+.. .+++.      ++.+.    .
T Consensus        30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~------d~~~~----~   97 (223)
T PRK14967         30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRG------DWARA----V   97 (223)
T ss_pred             HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEEC------chhhh----c
Confidence            334578899999999987 8888888775 55589999999987775543    3433 22222      22221    1


Q ss_pred             CCCCccEEEEcCCC---------------------------hHHHHHHHHHhccCCcEEEEEcC
Q 043260          265 HGTGVDYGFECTGV---------------------------ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       265 ~~~g~d~vid~~g~---------------------------~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      ....||+|+.+.+-                           ...+..+.+.|+++ |+++++-.
T Consensus        98 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~~~  160 (223)
T PRK14967         98 EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLVQS  160 (223)
T ss_pred             cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            23379999986320                           12356788999998 99987643

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.014  Score=54.83  Aligned_cols=106  Identities=16%  Similarity=0.176  Sum_probs=67.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee---eCCCCCCCchHHHHHHHhcCC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF---INPDDEPNKSISELVKEMTHG-  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~~~~~~~~-  266 (332)
                      ++++++|+|+ |++|..+++.+...|+ +|+++++++++++.+    ++.|.+..   .|..+  .++..+.+.+.... 
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d--~~~v~~~~~~~~~~~   83 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVAD--AEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCC--HHHHHHHHHHHHHHC
Confidence            4678999998 9999999999999999 899999988776533    33455432   23333  23333332222111 


Q ss_pred             CCccEEEEcCCChH-------------------------HHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          267 TGVDYGFECTGVAS-------------------------LISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       267 ~g~d~vid~~g~~~-------------------------~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      .++|++|+++|...                         ....++..+.+. .|+++.+++...
T Consensus        84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~  147 (334)
T PRK07109         84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALA  147 (334)
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhh
Confidence            15899999988420                         122345555442 289999987654

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.02  Score=50.73  Aligned_cols=103  Identities=20%  Similarity=0.236  Sum_probs=62.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHH----HHHcCCC-eee--CCCCCCCchHHHHHHHhcCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPC-RKDK----GEAFGMT-DFI--NPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~-~~~~----~~~lga~-~v~--~~~~~~~~~~~~~~~~~~~~  266 (332)
                      +++++||+|+ |.+|..++..+...|. +|+++.++.+ +.+.    ++..+.. ..+  |..+  .++..+.+.+....
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   81 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTD--EESVAALMDTAREE   81 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHh
Confidence            4678999998 9999999999988998 8988887653 3322    2223332 122  3332  23333333332211


Q ss_pred             -CCccEEEEcCCCh-------------------HHHHHHHHHhccCCcEEEEEcCC
Q 043260          267 -TGVDYGFECTGVA-------------------SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       267 -~g~d~vid~~g~~-------------------~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                       .++|++|.+.+..                   ..++.+.+.+..+ |+++.+++.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~-~~iv~isS~  136 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAG-SRVVFVTSH  136 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCC-ceEEEEeCc
Confidence             2589999887642                   1334455555555 888888763

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.82  E-value=0.015  Score=56.68  Aligned_cols=81  Identities=15%  Similarity=0.267  Sum_probs=51.8

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch--H-HHHHHcCCCee-eCCCCCCCchHHHHHHHhcC-CCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR--K-DKGEAFGMTDF-INPDDEPNKSISELVKEMTH-GTG  268 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~--~-~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~-~~g  268 (332)
                      .+++++||+|+ |++|..+++.+...|+ +|++++++...  + +...+++...+ .|..+  .++..+.+..... ..+
T Consensus       208 ~~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g~  284 (450)
T PRK08261        208 LAGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDITA--PDAPARIAEHLAERHGG  284 (450)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCC--HHHHHHHHHHHHHhCCC
Confidence            35789999998 9999999999999999 89988874322  2 23345564432 34433  2223332222211 115


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|+||++.|.
T Consensus       285 id~vi~~AG~  294 (450)
T PRK08261        285 LDIVVHNAGI  294 (450)
T ss_pred             CCEEEECCCc
Confidence            8999999883

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.82  E-value=0.017  Score=54.93  Aligned_cols=98  Identities=13%  Similarity=0.140  Sum_probs=68.7

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC---CC-eeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG---MT-DFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg---a~-~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      ++|||+|+|.+|..+++.+...|-.+|++.+++.++.+.+....   .. ..+|..+     . +++.++..  ++|+||
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d-----~-~al~~li~--~~d~VI   73 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD-----V-DALVALIK--DFDLVI   73 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC-----h-HHHHHHHh--cCCEEE
Confidence            57999999999999999998888459999999999888876653   21 2334333     2 23334433  369999


Q ss_pred             EcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          274 ECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       274 d~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ++.+..-....+-.|++.+ -.++.......
T Consensus        74 n~~p~~~~~~i~ka~i~~g-v~yvDts~~~~  103 (389)
T COG1748          74 NAAPPFVDLTILKACIKTG-VDYVDTSYYEE  103 (389)
T ss_pred             EeCCchhhHHHHHHHHHhC-CCEEEcccCCc
Confidence            9999854444444566655 67777777653

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.017  Score=51.86  Aligned_cols=80  Identities=19%  Similarity=0.200  Sum_probs=53.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCC-ee--eCCCCCCCchHHHHHHHhcC-CCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMT-DF--INPDDEPNKSISELVKEMTH-GTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~-~v--~~~~~~~~~~~~~~~~~~~~-~~g~  269 (332)
                      .+++++|+|+ |++|..+++.+...|+ +|++++++.++.+. .++++.. ..  .|..+  .+++.+.+.+... -...
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i   81 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITD--DAAIERAVATVVARFGRV   81 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4678999998 9999999999999999 99999998876553 4455532 12  23332  2333333333211 1258


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|++.|.
T Consensus        82 d~lv~~ag~   90 (261)
T PRK08265         82 DILVNLACT   90 (261)
T ss_pred             CEEEECCCC
Confidence            999999874

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.80  E-value=0.021  Score=50.50  Aligned_cols=94  Identities=16%  Similarity=0.244  Sum_probs=63.6

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCC--eEEEEcCC----cch--------HHHHHHcCCCeeeCCCCCCCchHHHHH
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAA--KIIGIDKN----PCR--------KDKGEAFGMTDFINPDDEPNKSISELV  260 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~--~Vi~~~~~----~~~--------~~~~~~lga~~v~~~~~~~~~~~~~~~  260 (332)
                      -.+.+++|+|+|+.|.+++..+...|+.  +|++++++    .+|        .+++++++... .   +   .++.+.+
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~---~---~~l~~~l   95 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-T---G---GTLKEAL   95 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-c---c---CCHHHHH
Confidence            4678999999999999999999999997  89999998    443        33445543211 0   0   1233333


Q ss_pred             HHhcCCCCccEEEEcCCChHHH-HHHHHHhccCCcEEEEEcCCC
Q 043260          261 KEMTHGTGVDYGFECTGVASLI-SEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~~~~~-~~~~~~l~~~~G~~v~~G~~~  303 (332)
                            .++|++|++++.. .+ ...++.+.++ ..++.+.++.
T Consensus        96 ------~~~dvlIgaT~~G-~~~~~~l~~m~~~-~ivf~lsnP~  131 (226)
T cd05311          96 ------KGADVFIGVSRPG-VVKKEMIKKMAKD-PIVFALANPV  131 (226)
T ss_pred             ------hcCCEEEeCCCCC-CCCHHHHHhhCCC-CEEEEeCCCC
Confidence                  1489999999743 43 4667777776 6666666443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.77  E-value=0.0092  Score=52.95  Aligned_cols=103  Identities=17%  Similarity=0.170  Sum_probs=60.6

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchH-------------------H----HHHHcCCCeeeCCCCCCC
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRK-------------------D----KGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~-------------------~----~~~~lga~~v~~~~~~~~  253 (332)
                      ..+|+|+|+|++|..++..+...|..+++++|.+.-..                   +    .++++..+.-+...+   
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~---   87 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE---   87 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee---
Confidence            46799999999999999999999999999999654211                   1    112222221111111   


Q ss_pred             chH-HHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          254 KSI-SELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       254 ~~~-~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ..+ .+.+.++... .+|+||||..+...-..+.+.....+-.++..+..+
T Consensus        88 ~~i~~~~~~~l~~~-~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g  137 (231)
T cd00755          88 EFLTPDNSEDLLGG-DPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG  137 (231)
T ss_pred             eecCHhHHHHHhcC-CCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            111 0112233322 599999999986554455555555423555554444

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.77  E-value=0.016  Score=45.33  Aligned_cols=101  Identities=17%  Similarity=0.306  Sum_probs=68.1

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCCe--eeCCCCCCCchHHHHHHHh
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMTD--FINPDDEPNKSISELVKEM  263 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~~--v~~~~~~~~~~~~~~~~~~  263 (332)
                      ....+.++++++-+|+|. |..+..+++..+..+|+.+|.++...+.++    .++...  ++..+.   ..   .....
T Consensus        13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~~---~~~~~   85 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA---PE---ALEDS   85 (124)
T ss_pred             HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc---cc---cChhh
Confidence            445667788999999977 888888988875458999999998777653    344432  222211   11   01111


Q ss_pred             cCCCCccEEEEcCCC---hHHHHHHHHHhccCCcEEEEEc
Q 043260          264 THGTGVDYGFECTGV---ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       264 ~~~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                        ...+|+|+...+.   ...+..+.+.|+++ |++++-.
T Consensus        86 --~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~  122 (124)
T TIGR02469        86 --LPEPDRVFIGGSGGLLQEILEAIWRRLRPG-GRIVLNA  122 (124)
T ss_pred             --cCCCCEEEECCcchhHHHHHHHHHHHcCCC-CEEEEEe
Confidence              1269999986543   23678999999998 9988654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.006  Score=57.19  Aligned_cols=80  Identities=18%  Similarity=0.317  Sum_probs=54.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee-e--CCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF-I--NPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v-~--~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++++++.+    ++.|.+.. +  |..+  .++..+.+.+... .
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   82 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD--ADQVKALATQAASFG   82 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHhc
Confidence            5688999998 9999999999999999 899999998877533    34565432 2  3332  2333332222211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      .++|++|+++|.
T Consensus        83 g~iD~lVnnAG~   94 (330)
T PRK06139         83 GRIDVWVNNVGV   94 (330)
T ss_pred             CCCCEEEECCCc
Confidence            258999999984

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.022  Score=50.48  Aligned_cols=78  Identities=19%  Similarity=0.318  Sum_probs=52.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCee-e--CCCCCCCchHHH---HHHHhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTDF-I--NPDDEPNKSISE---LVKEMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~v-~--~~~~~~~~~~~~---~~~~~~~~~  267 (332)
                      ++++++|+|+ |.+|...++.+...|+ +|+++++++++.+. .++++.... +  |..+  ..+..+   .+.+..  .
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~--~   79 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGD--VAAQKALAQALAEAF--G   79 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHHh--C
Confidence            4678999998 9999999999999999 89999988766543 345564322 2  2222  122222   222222  2


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|.+.|.
T Consensus        80 ~id~vi~~ag~   90 (249)
T PRK06500         80 RLDAVFINAGV   90 (249)
T ss_pred             CCCEEEECCCC
Confidence            58999998874

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.75  E-value=0.014  Score=53.54  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=37.7

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG  237 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~  237 (332)
                      ..+++|+|+|+|++|.+++..+...|+++|++++++.+|.+.+
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~l  167 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAAL  167 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            3567899999999999999999999998999999998887644

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.74  E-value=0.023  Score=50.29  Aligned_cols=82  Identities=18%  Similarity=0.227  Sum_probs=52.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcC--CC-eeeCCCCCCCchHHHHHHHh-cCCCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFG--MT-DFINPDDEPNKSISELVKEM-THGTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lg--a~-~v~~~~~~~~~~~~~~~~~~-~~~~g~  269 (332)
                      ++.++||+|+ |.+|..+++.+...|. +|++++++.++.+.+ ..+.  .. ..+..+-.+.+++...+.+. .....+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   82 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV   82 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4678999998 9999999999988999 899999998776543 2222  21 12211111223333333322 111258


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |+||.+.|.
T Consensus        83 d~vi~~ag~   91 (251)
T PRK07231         83 DILVNNAGT   91 (251)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.026  Score=50.86  Aligned_cols=79  Identities=15%  Similarity=0.194  Sum_probs=51.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-e--eCCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-F--INPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+..    .+.+... .  +|..+  .+++.+.+.+... -
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~~   84 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD--YAAVEAAFAQIADEF   84 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5789999998 9999999999999999 899999887765422    2223322 2  23322  2334343433221 1


Q ss_pred             CCccEEEEcCC
Q 043260          267 TGVDYGFECTG  277 (332)
Q Consensus       267 ~g~d~vid~~g  277 (332)
                      .++|++|.+.|
T Consensus        85 ~~iD~vi~~ag   95 (264)
T PRK07576         85 GPIDVLVSGAA   95 (264)
T ss_pred             CCCCEEEECCC
Confidence            25899999876

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.72  E-value=0.011  Score=52.27  Aligned_cols=77  Identities=21%  Similarity=0.361  Sum_probs=52.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCee-eCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDF-INPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v-~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      .+++++|+|+ |.+|..+++.+...|. +|++++++.++.+.+ ++.+...+ .|..+  ..+..+.+.+   ..++|+|
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~---~~~~d~v   81 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVGD--DAAIRAALAA---AGAFDGL   81 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCCC--HHHHHHHHHH---hCCCCEE
Confidence            5678999998 9999999999999998 899999988776544 34454322 23332  1222222222   2268999


Q ss_pred             EEcCCC
Q 043260          273 FECTGV  278 (332)
Q Consensus       273 id~~g~  278 (332)
                      |++.|.
T Consensus        82 i~~ag~   87 (245)
T PRK07060         82 VNCAGI   87 (245)
T ss_pred             EECCCC
Confidence            999874

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.71  E-value=0.024  Score=47.39  Aligned_cols=90  Identities=16%  Similarity=0.235  Sum_probs=56.6

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      .+|.++|.|.+|...++-+...|. +|++.++++++.+.+.+.|+..+        ++..+.+.      ..|+||-++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~~~--------~s~~e~~~------~~dvvi~~v~   66 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAEVA--------DSPAEAAE------QADVVILCVP   66 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEEEE--------SSHHHHHH------HBSEEEE-SS
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhhhh--------hhhhhHhh------cccceEeecc
Confidence            368899999999999999999999 99999999999888877774333        22222222      2477777777


Q ss_pred             ChHHHHHHHHH------hccCCcEEEEEcCCC
Q 043260          278 VASLISEALEA------TKLGKGKVMAIGAAN  303 (332)
Q Consensus       278 ~~~~~~~~~~~------l~~~~G~~v~~G~~~  303 (332)
                      +.+.....+..      +.++ ..++..+...
T Consensus        67 ~~~~v~~v~~~~~i~~~l~~g-~iiid~sT~~   97 (163)
T PF03446_consen   67 DDDAVEAVLFGENILAGLRPG-KIIIDMSTIS   97 (163)
T ss_dssp             SHHHHHHHHHCTTHGGGS-TT-EEEEE-SS--
T ss_pred             cchhhhhhhhhhHHhhccccc-eEEEecCCcc
Confidence            75554444332      3443 4555555443

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.023  Score=50.81  Aligned_cols=78  Identities=15%  Similarity=0.189  Sum_probs=51.9

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcC-CC-ee--eCCCCCCCchHHHHHHHhcC--CCCc
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFG-MT-DF--INPDDEPNKSISELVKEMTH--GTGV  269 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lg-a~-~v--~~~~~~~~~~~~~~~~~~~~--~~g~  269 (332)
                      +++||+|+ |.+|..+++.+...|. +|++++++.++.+.+. .++ .. .+  .|..+  ..++.+.+.+...  ...+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTD--RAAWDAALADFAAATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence            47899998 9999999999888998 9999999888766543 332 21 22  23332  2333333333211  2268


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |+||.++|.
T Consensus        79 d~vi~~ag~   87 (260)
T PRK08267         79 DVLFNNAGI   87 (260)
T ss_pred             CEEEECCCC
Confidence            999999885

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.68  E-value=0.014  Score=54.03  Aligned_cols=93  Identities=26%  Similarity=0.451  Sum_probs=64.3

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      .+|.|+|+|.+|.+.+..++..|. .+|+++++++++.+.+++.|......      .+..+.+      ..+|+||.|+
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~------~~~~~~~------~~aDvViiav   74 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT------TSAAEAV------KGADLVILCV   74 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec------CCHHHHh------cCCCEEEECC
Confidence            579999999999999998888884 37999999999888888887532211      1111112      2589999999


Q ss_pred             CChHH---HHHHHHHhccCCcEEEEEcCCC
Q 043260          277 GVASL---ISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       277 g~~~~---~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .....   +......++++ ..++.+|...
T Consensus        75 p~~~~~~v~~~l~~~l~~~-~iv~dvgs~k  103 (307)
T PRK07502         75 PVGASGAVAAEIAPHLKPG-AIVTDVGSVK  103 (307)
T ss_pred             CHHHHHHHHHHHHhhCCCC-CEEEeCccch
Confidence            87422   33344455665 6777776543

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.68  E-value=0.028  Score=52.59  Aligned_cols=103  Identities=15%  Similarity=0.167  Sum_probs=70.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHH-HHcCCCeEEEEcCCcchHHHH-HH----cCCCeeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRA-RIQGAAKIIGIDKNPCRKDKG-EA----FGMTDFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la-~~~G~~~Vi~~~~~~~~~~~~-~~----lga~~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      +..++++|+|+|..|...+..+ ...++++|.++++++++.+.+ ++    ++.. +...     .+..+.+      ..
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~-----~~~~~~~------~~  192 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVV-----NSADEAI------EE  192 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEe-----CCHHHHH------hc
Confidence            4567899999999998777554 456888999999998886533 33    3433 2112     2233333      25


Q ss_pred             ccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChH
Q 043260          269 VDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP  312 (332)
Q Consensus       269 ~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~  312 (332)
                      .|+|+.|+++...+- . ++++++ -+++.+|.......+++..
T Consensus       193 aDiVi~aT~s~~p~i-~-~~l~~G-~hV~~iGs~~p~~~E~~~~  233 (325)
T PRK08618        193 ADIIVTVTNAKTPVF-S-EKLKKG-VHINAVGSFMPDMQELPSE  233 (325)
T ss_pred             CCEEEEccCCCCcch-H-HhcCCC-cEEEecCCCCcccccCCHH
Confidence            899999999864433 3 899997 8999999876545556653

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.67  E-value=0.0067  Score=55.55  Aligned_cols=76  Identities=12%  Similarity=0.048  Sum_probs=52.0

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCe-eeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTD-FINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~-v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      .+++++|+|+|+.+.+++..+...|+++|+++.|+.+|.+.+ .+++... +....     .. +.+....  ..+|+||
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~-----~~-~~~~~~~--~~~DiVI  195 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE-----GD-SGGLAIE--KAAEVLV  195 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc-----ch-hhhhhcc--cCCCEEE
Confidence            578899999999999999999999998999999998876644 4443211 11110     00 1121221  2589999


Q ss_pred             EcCCCh
Q 043260          274 ECTGVA  279 (332)
Q Consensus       274 d~~g~~  279 (332)
                      +|++..
T Consensus       196 naTp~g  201 (282)
T TIGR01809       196 STVPAD  201 (282)
T ss_pred             ECCCCC
Confidence            998864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.66  E-value=0.0062  Score=53.18  Aligned_cols=103  Identities=19%  Similarity=0.383  Sum_probs=68.0

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHH----HHcCCCee--eCCCCCCCchHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKG----EAFGMTDF--INPDDEPNKSISELV  260 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~----~~lga~~v--~~~~~~~~~~~~~~~  260 (332)
                      +.+...+++|++||-+|+|. |..++.+++..|. .+|+.+++.++-.+.+    +++|.+.+  +..+.     .    
T Consensus        64 ~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg-----~----  133 (209)
T PF01135_consen   64 MLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG-----S----  133 (209)
T ss_dssp             HHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G-----G----
T ss_pred             HHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch-----h----
Confidence            34677899999999999977 8888888888874 3588999887644443    44565432  22211     1    


Q ss_pred             HHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEE-EcC
Q 043260          261 KEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMA-IGA  301 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~-~G~  301 (332)
                      .-+.....||.|+-+.+.+..-...++.|+++ |+++. ++.
T Consensus       134 ~g~~~~apfD~I~v~~a~~~ip~~l~~qL~~g-GrLV~pi~~  174 (209)
T PF01135_consen  134 EGWPEEAPFDRIIVTAAVPEIPEALLEQLKPG-GRLVAPIGQ  174 (209)
T ss_dssp             GTTGGG-SEEEEEESSBBSS--HHHHHTEEEE-EEEEEEESS
T ss_pred             hccccCCCcCEEEEeeccchHHHHHHHhcCCC-cEEEEEEcc
Confidence            11112236999999888876678999999998 99887 554

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK08017 oxidoreductase; Provisional

Probab=96.66  E-value=0.011  Score=52.61  Aligned_cols=77  Identities=21%  Similarity=0.333  Sum_probs=54.6

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHH---HHHHhcCCCCccEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISE---LVKEMTHGTGVDYG  272 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~---~~~~~~~~~g~d~v  272 (332)
                      +++||+|+ |.+|..+++.+...|. +|++++++.++.+.+++.+.+.+. |..+  .+++.+   .+.+..++ .+|.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~~-~~~~i   78 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDLDD--PESVERAADEVIALTDN-RLYGL   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeecCC--HHHHHHHHHHHHHhcCC-CCeEE
Confidence            57999998 9999999999999998 899999999888877777765432 3332  122222   22222323 68999


Q ss_pred             EEcCCC
Q 043260          273 FECTGV  278 (332)
Q Consensus       273 id~~g~  278 (332)
                      +.+.|.
T Consensus        79 i~~ag~   84 (256)
T PRK08017         79 FNNAGF   84 (256)
T ss_pred             EECCCC
Confidence            998774

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.66  E-value=0.011  Score=53.51  Aligned_cols=79  Identities=19%  Similarity=0.220  Sum_probs=52.7

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCeee--CCCCCCCchHHHHHHHhcCC-CCccE
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDFI--NPDDEPNKSISELVKEMTHG-TGVDY  271 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v~--~~~~~~~~~~~~~~~~~~~~-~g~d~  271 (332)
                      ++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ ++++...++  |..+  .+++.+.+.+.... .+.|+
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   81 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTD--PASFAAFLDAVEADLGPIDV   81 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            578999998 9999999998888999 899999988776543 444422222  3332  33433333332111 26899


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      +|++.|.
T Consensus        82 li~~ag~   88 (273)
T PRK07825         82 LVNNAGV   88 (273)
T ss_pred             EEECCCc
Confidence            9999874

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.011  Score=52.94  Aligned_cols=80  Identities=20%  Similarity=0.325  Sum_probs=53.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCee-eCCCCCCCchHHHHHHHhcC-CCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDF-INPDDEPNKSISELVKEMTH-GTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v-~~~~~~~~~~~~~~~~~~~~-~~g~d~  271 (332)
                      +|++++|+|+ |++|..+++.+...|+ +|+++++++.+.+.. .+++...+ .|..+  .+++.+.+.+... ..++|+
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGLFVPTDVTD--EDAVNALFDTAAETYGSVDI   82 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCcEEEeeCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            5789999998 9999999999999998 899999887765543 44544322 23332  2333333332211 125899


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      +|.++|.
T Consensus        83 vi~~ag~   89 (255)
T PRK06057         83 AFNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998874

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.64  E-value=0.022  Score=51.64  Aligned_cols=105  Identities=17%  Similarity=0.201  Sum_probs=62.8

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch-------------------HH----HHHHcCCC-eeeCCCCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR-------------------KD----KGEAFGMT-DFINPDDE  251 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~-------------------~~----~~~~lga~-~v~~~~~~  251 (332)
                      ...+|+|+|+|++|..++..+...|..+++++|.+...                   .+    .+.++..+ .+....+.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~  108 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF  108 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence            45789999999999999999999998899999865321                   11    11222222 12111110


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ..   .+.+.++.. ..+|+||||..+...-..+.+.+...+-.++..|..++
T Consensus       109 i~---~e~~~~ll~-~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~  157 (268)
T PRK15116        109 IT---PDNVAEYMS-AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGG  157 (268)
T ss_pred             cC---hhhHHHHhc-CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCccc
Confidence            00   112223332 26999999999854544455555554245676666554

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.63  E-value=0.03  Score=50.95  Aligned_cols=105  Identities=16%  Similarity=0.246  Sum_probs=66.3

Q ss_pred             CCCEEEEECC---ChHHHHHHHHHHHcCCCeEEEEcCCcc---hHH-HHHHcCCCeee--CCCCCCCchHHHHHHHhcCC
Q 043260          196 KGSSVAVFGL---GAVGLGVMDRARIQGAAKIIGIDKNPC---RKD-KGEAFGMTDFI--NPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       196 ~g~~vlV~G~---g~vG~~~~~la~~~G~~~Vi~~~~~~~---~~~-~~~~lga~~v~--~~~~~~~~~~~~~~~~~~~~  266 (332)
                      .++++||+|+   +++|.++++.+...|+ +|++++++++   +.+ ..++++....+  |..+  .++..+.+.+....
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~i~~~   80 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSK--PEHFKSLAESLKKD   80 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCC--HHHHHHHHHHHHHH
Confidence            4788999987   4899999999999999 8999888753   222 22445543332  3332  33444434333211


Q ss_pred             -CCccEEEEcCCCh--------------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          267 -TGVDYGFECTGVA--------------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       267 -~g~d~vid~~g~~--------------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                       ..+|++|++.|..              +               ..+..+..+.++ |+++.+++..+
T Consensus        81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-g~Iv~isS~~~  147 (274)
T PRK08415         81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG-ASVLTLSYLGG  147 (274)
T ss_pred             cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC-CcEEEEecCCC
Confidence             2589999998841              0               124455566676 89998876554

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.63  E-value=0.012  Score=58.29  Aligned_cols=74  Identities=19%  Similarity=0.234  Sum_probs=55.7

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      .+.++++|+|+|.|..|++++++++..|+ +|+++|.++++.+.++++|...+ ....     ..+.+      ..+|+|
T Consensus         8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~~-~~~~-----~~~~l------~~~D~V   74 (488)
T PRK03369          8 PLLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVATV-STSD-----AVQQI------ADYALV   74 (488)
T ss_pred             cccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEEE-cCcc-----hHhHh------hcCCEE
Confidence            35678999999999999999999999998 99999987766666777787433 2211     11112      247999


Q ss_pred             EEcCCCh
Q 043260          273 FECTGVA  279 (332)
Q Consensus       273 id~~g~~  279 (332)
                      |.+.|.+
T Consensus        75 V~SpGi~   81 (488)
T PRK03369         75 VTSPGFR   81 (488)
T ss_pred             EECCCCC
Confidence            9999875

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=96.60  E-value=0.0032  Score=57.35  Aligned_cols=98  Identities=16%  Similarity=0.245  Sum_probs=61.3

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCC-ee-eCCCCCCCchHHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMT-DF-INPDDEPNKSISELVK  261 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~-~v-~~~~~~~~~~~~~~~~  261 (332)
                      +.+.+++++|++||-+|+|- |-.+..+++..|+ +|++++.+++..+.++    +.|.. .+ +...+     +    +
T Consensus        54 ~~~~~~l~~G~~vLDiGcGw-G~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D-----~----~  122 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCGW-GGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQD-----Y----R  122 (273)
T ss_dssp             HHTTTT--TT-EEEEES-TT-SHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES------G----G
T ss_pred             HHHHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEee-----c----c
Confidence            45788999999999999974 7777788888899 9999999998887654    45642 11 11111     1    2


Q ss_pred             HhcCCCCccEEEEc-----CCC---hHHHHHHHHHhccCCcEEEEE
Q 043260          262 EMTHGTGVDYGFEC-----TGV---ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       262 ~~~~~~g~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      ++..  .||.|+..     +|.   +..+..+.+.|+|+ |++++-
T Consensus       123 ~~~~--~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~lq  165 (273)
T PF02353_consen  123 DLPG--KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG-GRLVLQ  165 (273)
T ss_dssp             G-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT-EEEEEE
T ss_pred             ccCC--CCCEEEEEechhhcChhHHHHHHHHHHHhcCCC-cEEEEE
Confidence            2222  79998763     432   24578999999998 998743

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=96.59  E-value=0.016  Score=52.72  Aligned_cols=106  Identities=15%  Similarity=0.215  Sum_probs=75.4

Q ss_pred             hHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCC-e--eeCCCCCCCchH
Q 043260          184 GFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMT-D--FINPDDEPNKSI  256 (332)
Q Consensus       184 a~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~-~--v~~~~~~~~~~~  256 (332)
                      ++..+.+..++++|++||=+|+|- |.+++.+|+..|+ +|+.++.|++..+.++    +.|.. .  +...+       
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d-------  130 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD-------  130 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc-------
Confidence            344456888999999999999987 8888899999998 9999999999877554    45654 1  21111       


Q ss_pred             HHHHHHhcCCCCccEEEE-----cCCC---hHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          257 SELVKEMTHGTGVDYGFE-----CTGV---ASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       257 ~~~~~~~~~~~g~d~vid-----~~g~---~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                         .++.. + .||-|+.     .+|.   ++-+..+.+.|+++ |++++-.....
T Consensus       131 ---~rd~~-e-~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~-G~~llh~I~~~  180 (283)
T COG2230         131 ---YRDFE-E-PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG-GRMLLHSITGP  180 (283)
T ss_pred             ---ccccc-c-ccceeeehhhHHHhCcccHHHHHHHHHhhcCCC-ceEEEEEecCC
Confidence               11122 2 2777764     3443   34578899999998 99887765543

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.58  E-value=0.022  Score=52.04  Aligned_cols=95  Identities=18%  Similarity=0.261  Sum_probs=66.9

Q ss_pred             hcccchhhhHHHHHHhhC-CCCCCEEEEECCCh-HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          176 FLSCGYSSGFGAAWKEFK-VEKGSSVAVFGLGA-VGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       176 ~l~~~~~ta~~al~~~~~-~~~g~~vlV~G~g~-vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      .+||+....+..+ +..+ --.|++++|+|.|. +|.-++.++...|+ +|+++.+..                      
T Consensus       137 ~~PcTp~ai~~ll-~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t----------------------  192 (286)
T PRK14175        137 FVPCTPLGIMEIL-KHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS----------------------  192 (286)
T ss_pred             CCCCcHHHHHHHH-HHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc----------------------
Confidence            4555544444433 4333 35789999999955 99999999999998 888886432                      


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .++    .+.+  +.+|+||.++|.+..+..  +.++++ ..++.+|...
T Consensus       193 ~~l----~~~~--~~ADIVIsAvg~p~~i~~--~~vk~g-avVIDvGi~~  233 (286)
T PRK14175        193 KDM----ASYL--KDADVIVSAVGKPGLVTK--DVVKEG-AVIIDVGNTP  233 (286)
T ss_pred             hhH----HHHH--hhCCEEEECCCCCcccCH--HHcCCC-cEEEEcCCCc
Confidence            112    2222  258999999999766554  468887 8999999865

>PLN00203 glutamyl-tRNA reductase

Probab=96.55  E-value=0.023  Score=56.45  Aligned_cols=97  Identities=19%  Similarity=0.239  Sum_probs=64.6

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCee--eCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDF--INPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v--~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      +.+|+|+|+|.+|.+++..+...|+++|+++.++.++.+.+ .+++...+  ...     ++.    .+..  ..+|+||
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~-----~dl----~~al--~~aDVVI  334 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPL-----DEM----LACA--AEADVVF  334 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecH-----hhH----HHHH--hcCCEEE
Confidence            68899999999999999999999987899999998887644 44542211  111     122    2222  2589999


Q ss_pred             EcCCChHH--HHHHHHHhcc----CCc--EEEEEcCCCC
Q 043260          274 ECTGVASL--ISEALEATKL----GKG--KVMAIGAANE  304 (332)
Q Consensus       274 d~~g~~~~--~~~~~~~l~~----~~G--~~v~~G~~~~  304 (332)
                      .+++.+..  ....++.+.+    .+.  .++.++.+.+
T Consensus       335 sAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd  373 (519)
T PLN00203        335 TSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRN  373 (519)
T ss_pred             EccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence            99987533  2344444422    101  5888898865

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.55  E-value=0.039  Score=48.29  Aligned_cols=80  Identities=20%  Similarity=0.203  Sum_probs=50.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HH---HHcCCCee-eCCCCCCCchHHHHHHHhcCC-CC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KG---EAFGMTDF-INPDDEPNKSISELVKEMTHG-TG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~---~~lga~~v-~~~~~~~~~~~~~~~~~~~~~-~g  268 (332)
                      +++++||+|+ |.+|..+++.+...|+ +|++++++.++.+ .+   +..+...+ .|..+  .+++.+.+.+.... .+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRIGGIDLVD--PQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceEEEeecCC--HHHHHHHHHHHHHHhCC
Confidence            4789999998 9999999999988899 8999999776543 22   22333222 22222  23333333322111 16


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|+||.+.+.
T Consensus        83 ~d~vi~~ag~   92 (239)
T PRK12828         83 LDALVNIAGA   92 (239)
T ss_pred             cCEEEECCcc
Confidence            8999998774

>PRK08589 short chain dehydrogenase; Validated

Probab=96.55  E-value=0.032  Score=50.46  Aligned_cols=79  Identities=16%  Similarity=0.254  Sum_probs=50.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHH---cCCC-ee--eCCCCCCCchHHHHHHHhcCC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEA---FGMT-DF--INPDDEPNKSISELVKEMTHG-  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~---lga~-~v--~~~~~~~~~~~~~~~~~~~~~-  266 (332)
                      +++++||+|+ +++|...++.+...|+ +|++++++ ++.+ .+++   .+.. ..  .|..+  .++..+.+.+.... 
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   80 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISD--EQQVKDFASEIKEQF   80 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHHHc
Confidence            5789999998 9999999998888999 99999988 4433 3333   3322 12  23332  23333333332111 


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ...|++|++.|.
T Consensus        81 g~id~li~~Ag~   92 (272)
T PRK08589         81 GRVDVLFNNAGV   92 (272)
T ss_pred             CCcCEEEECCCC
Confidence            158999998874

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.54  E-value=0.014  Score=52.41  Aligned_cols=80  Identities=14%  Similarity=0.209  Sum_probs=53.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCC-eee--CCCCCCCchHHHHHHHhcC-CCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMT-DFI--NPDDEPNKSISELVKEMTH-GTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~-~v~--~~~~~~~~~~~~~~~~~~~-~~g~  269 (332)
                      +++++||+|+ +++|..+++.+...|+ +|+++++++++.+.+. +++.. ..+  |..+  .++..+.+.+... -..+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   81 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTS--YADNQRAVDQTVDAFGKL   81 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC--HHHHHHHHHHHHHhcCCC
Confidence            5788999998 9999999999999999 8999999887776554 34432 222  2222  2333333333211 1258


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|++.|.
T Consensus        82 d~li~~ag~   90 (263)
T PRK06200         82 DCFVGNAGI   90 (263)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.54  E-value=0.016  Score=52.18  Aligned_cols=106  Identities=19%  Similarity=0.230  Sum_probs=67.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-Hc----CCC-eee--CCCCCCCchHHHHHHHhcCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AF----GMT-DFI--NPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~l----ga~-~v~--~~~~~~~~~~~~~~~~~~~~  266 (332)
                      .|+++||+|+ +++|.++++.+...|+ +|++++++.++.+.+. ++    +.+ ..+  |..+  .++..+.+.+...-
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~   83 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK--REDLERTVKELKNI   83 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC--HHHHHHHHHHHHhh
Confidence            4788999998 9999999999999999 8999999887765332 22    322 122  3332  33444444433211


Q ss_pred             CCccEEEEcCCCh----------H---------------HHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          267 TGVDYGFECTGVA----------S---------------LISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       267 ~g~d~vid~~g~~----------~---------------~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      .++|+++++.|..          +               ..+.++..+... .|+++.+++...
T Consensus        84 g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~  147 (263)
T PRK08339         84 GEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAI  147 (263)
T ss_pred             CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccc
Confidence            2589999998742          0               123445555332 288999887654

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.54  E-value=0.012  Score=52.56  Aligned_cols=82  Identities=18%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             hCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCC--eee--CCCCCCCchHHHHHH---H
Q 043260          192 FKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMT--DFI--NPDDEPNKSISELVK---E  262 (332)
Q Consensus       192 ~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~--~v~--~~~~~~~~~~~~~~~---~  262 (332)
                      ...-+++++||+|+ |.+|..+++.+...|. +|++++++.+..+.+.+ ....  .++  |..+  .+++.+.+.   +
T Consensus         6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~   82 (264)
T PRK12829          6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVAD--PAQVERVFDTAVE   82 (264)
T ss_pred             hhccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC--HHHHHHHHHHHHH
Confidence            34457789999998 9999999999999999 89999998776654433 2211  222  3322  233332222   2


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      ..+  ++|+||.+.|.
T Consensus        83 ~~~--~~d~vi~~ag~   96 (264)
T PRK12829         83 RFG--GLDVLVNNAGI   96 (264)
T ss_pred             HhC--CCCEEEECCCC
Confidence            222  68999998875

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.53  E-value=0.0079  Score=52.69  Aligned_cols=101  Identities=19%  Similarity=0.267  Sum_probs=67.4

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHH----HcCCCe--eeCCCCCCCchHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGE----AFGMTD--FINPDDEPNKSISELV  260 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~----~lga~~--v~~~~~~~~~~~~~~~  260 (332)
                      +.+...++++++||-+|+|. |..++.+++..+. .+|+.++.+++-.+.++    ++|.+.  ++..+.      .+  
T Consensus        69 ~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~------~~--  139 (215)
T TIGR00080        69 MTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG------TQ--  139 (215)
T ss_pred             HHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc------cc--
Confidence            33566789999999999876 6777777777653 36999999988776554    345432  222111      11  


Q ss_pred             HHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEE
Q 043260          261 KEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                       .......||+|+-..........+.+.|+++ |++++.
T Consensus       140 -~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~~g-G~lv~~  176 (215)
T TIGR00080       140 -GWEPLAPYDRIYVTAAGPKIPEALIDQLKEG-GILVMP  176 (215)
T ss_pred             -CCcccCCCCEEEEcCCcccccHHHHHhcCcC-cEEEEE
Confidence             1111236999987655555667888999998 998764

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.52  E-value=0.02  Score=49.70  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=31.9

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ...+|+|+|+|++|..+++.+..+|+.+++++|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            45779999999999999999999999899999976

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.52  E-value=0.031  Score=49.94  Aligned_cols=80  Identities=19%  Similarity=0.232  Sum_probs=51.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH---cCCC-eee--CCCCCCCchHHHHHHHhcCC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA---FGMT-DFI--NPDDEPNKSISELVKEMTHG-T  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~---lga~-~v~--~~~~~~~~~~~~~~~~~~~~-~  267 (332)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+..++   .+.. ..+  |..+  .+++.+.+.+.... .
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTD--DAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhcC
Confidence            4678999998 9999999999888998 88888888876644433   3432 122  2222  23333333332211 2


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|.++|.
T Consensus        83 ~id~vi~~ag~   93 (258)
T PRK08628         83 RIDGLVNNAGV   93 (258)
T ss_pred             CCCEEEECCcc
Confidence            68999999983

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.51  E-value=0.02  Score=53.01  Aligned_cols=106  Identities=12%  Similarity=0.082  Sum_probs=73.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHH-cCCCeEEEEcCCcchHH-HHHHcCCC--eeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARI-QGAAKIIGIDKNPCRKD-KGEAFGMT--DFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~-~G~~~Vi~~~~~~~~~~-~~~~lga~--~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      ....+++|+|+|..|.+.++.+.. .+.++|.+.+++.++.+ ++.++...  .+. .     .+..+.+      .++|
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~-----~~~~~av------~~aD  190 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-P-----LDGEAIP------EAVD  190 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-E-----CCHHHHh------hcCC
Confidence            456789999999999998888864 67789999999988765 44444321  111 1     2233333      2689


Q ss_pred             EEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHh
Q 043260          271 YGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIA  315 (332)
Q Consensus       271 ~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~  315 (332)
                      +|+.++++...+-..  .++++ -++..+|......-+++..-+.
T Consensus       191 iVitaT~s~~Pl~~~--~~~~g-~hi~~iGs~~p~~~El~~~~~~  232 (304)
T PRK07340        191 LVVTATTSRTPVYPE--AARAG-RLVVAVGAFTPDMAELAPRTVR  232 (304)
T ss_pred             EEEEccCCCCceeCc--cCCCC-CEEEecCCCCCCcccCCHHHHh
Confidence            999999986554343  37887 8999999877656677765433

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.48  E-value=0.015  Score=51.79  Aligned_cols=83  Identities=20%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCC-CeeeCCCCCCCchHHHHHHHhc-CCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGM-TDFINPDDEPNKSISELVKEMT-HGT  267 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga-~~v~~~~~~~~~~~~~~~~~~~-~~~  267 (332)
                      ..+++++|+|+ |.+|..++..+...|+ +|++++++.++++.+.+    .+. ..++..+-...+++.+.+.+.. ...
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAG   85 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            35789999998 9999999999999999 89999998887654322    222 1222221111234433333221 112


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      .+|++|++.|.
T Consensus        86 ~~d~li~~ag~   96 (258)
T PRK06949         86 TIDILVNNSGV   96 (258)
T ss_pred             CCCEEEECCCC
Confidence            58999999884

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.47  E-value=0.048  Score=47.29  Aligned_cols=47  Identities=36%  Similarity=0.490  Sum_probs=40.0

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGM  242 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga  242 (332)
                      -.|++++|+|.|.+|..+++.+...|. +|++++++.++.+.++ .+|+
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~   73 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGA   73 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCC
Confidence            467899999999999999999999999 9999999988776554 4464

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK07904 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.023  Score=50.93  Aligned_cols=85  Identities=19%  Similarity=0.274  Sum_probs=52.8

Q ss_pred             CCCCCCEEEEECC-ChHHHHHHHHHHHcC-CCeEEEEcCCcch-HH-H---HHHcCC-C-eeeCCCCCCCchHHHHHHHh
Q 043260          193 KVEKGSSVAVFGL-GAVGLGVMDRARIQG-AAKIIGIDKNPCR-KD-K---GEAFGM-T-DFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       193 ~~~~g~~vlV~G~-g~vG~~~~~la~~~G-~~~Vi~~~~~~~~-~~-~---~~~lga-~-~v~~~~~~~~~~~~~~~~~~  263 (332)
                      .+..++++||+|+ |++|...++.+...| . +|+++++++++ ++ .   +++.+. + +++..+-.+..+..+.+.+.
T Consensus         4 ~~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~   82 (253)
T PRK07904          4 AVGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAA   82 (253)
T ss_pred             ccCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHH
Confidence            3467789999998 999999998777775 7 99999988775 43 2   233343 1 22222211223333334433


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      ....+.|++|.+.|.
T Consensus        83 ~~~g~id~li~~ag~   97 (253)
T PRK07904         83 FAGGDVDVAIVAFGL   97 (253)
T ss_pred             HhcCCCCEEEEeeec
Confidence            322369999987765

>PRK09186 flagellin modification protein A; Provisional

Probab=96.46  E-value=0.051  Score=48.30  Aligned_cols=79  Identities=18%  Similarity=0.323  Sum_probs=51.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc----CCCe--e--eCCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF----GMTD--F--INPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l----ga~~--v--~~~~~~~~~~~~~~~~~~~~  265 (332)
                      +++++||+|+ |.+|..++..+...|+ +|+++.+++++.+.+ .++    +...  +  .|..+  .+++.+.+.+...
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~   79 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD--QESLEEFLSKSAE   79 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC--HHHHHHHHHHHHH
Confidence            5789999998 9999999999999999 899998887765433 222    3221  1  23332  3344444443211


Q ss_pred             -CCCccEEEEcCC
Q 043260          266 -GTGVDYGFECTG  277 (332)
Q Consensus       266 -~~g~d~vid~~g  277 (332)
                       -.++|++|++.+
T Consensus        80 ~~~~id~vi~~A~   92 (256)
T PRK09186         80 KYGKIDGAVNCAY   92 (256)
T ss_pred             HcCCccEEEECCc
Confidence             125899999885

>PRK06398 aldose dehydrogenase; Validated

Probab=96.45  E-value=0.0095  Score=53.49  Aligned_cols=75  Identities=15%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe-eeCCCCCCCchHHHHHHHhcCC-CCccEE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD-FINPDDEPNKSISELVKEMTHG-TGVDYG  272 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~~~~~~~~-~g~d~v  272 (332)
                      .|+++||+|+ +++|.+++..+...|+ +|+++++++++..     .... ..|..+  .+++.+.+.+.... ..+|++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~-----~~~~~~~D~~~--~~~i~~~~~~~~~~~~~id~l   76 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN-----DVDYFKVDVSN--KEQVIKGIDYVISKYGRIDIL   76 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC-----ceEEEEccCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4689999998 9999999999999999 9999988765432     1111 123332  23333333332111 258999


Q ss_pred             EEcCCC
Q 043260          273 FECTGV  278 (332)
Q Consensus       273 id~~g~  278 (332)
                      |++.|.
T Consensus        77 i~~Ag~   82 (258)
T PRK06398         77 VNNAGI   82 (258)
T ss_pred             EECCCC
Confidence            998874

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.45  E-value=0.03  Score=45.59  Aligned_cols=99  Identities=20%  Similarity=0.229  Sum_probs=58.4

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc-------------------hHH----HHHHcCCC-eeeCCCCCCCc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC-------------------RKD----KGEAFGMT-DFINPDDEPNK  254 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~-------------------~~~----~~~~lga~-~v~~~~~~~~~  254 (332)
                      +|+|+|+|++|...+..+...|.+++.++|.+.-                   |.+    .++++... .+.....    
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~----   76 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPE----   76 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEee----
Confidence            4899999999999999999999989999986521                   111    12223321 1111111    


Q ss_pred             hHHH-HHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          255 SISE-LVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       255 ~~~~-~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .+.+ ...+..  .++|+||+|..+........+.+...+-.++..|..+
T Consensus        77 ~~~~~~~~~~~--~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g  124 (143)
T cd01483          77 GISEDNLDDFL--DGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLG  124 (143)
T ss_pred             ecChhhHHHHh--cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            1100 111222  2699999999986555555566665513455555543

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06484 short chain dehydrogenase; Validated

Probab=96.44  E-value=0.037  Score=55.01  Aligned_cols=106  Identities=21%  Similarity=0.308  Sum_probs=69.8

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCee---eCCCCCCCchHHHHHHHhcCC-CC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTDF---INPDDEPNKSISELVKEMTHG-TG  268 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~v---~~~~~~~~~~~~~~~~~~~~~-~g  268 (332)
                      ..|+++||+|+ +++|...++.+...|+ +|++++++.++.+.+. +++....   .|..+  .++..+.+.+.... ..
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~  343 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITD--EAAVESAFAQIQARWGR  343 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCC--HHHHHHHHHHHHHHcCC
Confidence            45788999998 9999999999999998 9999999887776544 4554321   23332  23343333332211 15


Q ss_pred             ccEEEEcCCCh--------------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          269 VDYGFECTGVA--------------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       269 ~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      +|++|+++|..                          ...+.++..+..+ |+++.+++..+
T Consensus       344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-g~iv~isS~~~  404 (520)
T PRK06484        344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQG-GVIVNLGSIAS  404 (520)
T ss_pred             CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccC-CEEEEECchhh
Confidence            89999988742                          0133444555556 89999987654

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.44  E-value=0.019  Score=51.45  Aligned_cols=82  Identities=18%  Similarity=0.281  Sum_probs=53.5

Q ss_pred             CCCCCEEEEECC-C-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-----cCCCee--e--CCCCCCCchHHHHHHH
Q 043260          194 VEKGSSVAVFGL-G-AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-----FGMTDF--I--NPDDEPNKSISELVKE  262 (332)
Q Consensus       194 ~~~g~~vlV~G~-g-~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-----lga~~v--~--~~~~~~~~~~~~~~~~  262 (332)
                      +.+++++||+|+ | ++|.++++.+...|+ +|+++++++++++...+     +|...+  +  |..+  .+++.+.+.+
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~   90 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS--EAQVDALIDA   90 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC--HHHHHHHHHH
Confidence            445789999987 6 799999999999999 89999988776653322     453332  2  3332  2333333332


Q ss_pred             hcC-CCCccEEEEcCCC
Q 043260          263 MTH-GTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~-~~g~d~vid~~g~  278 (332)
                      ... ...+|++|++.|.
T Consensus        91 ~~~~~g~id~li~~ag~  107 (262)
T PRK07831         91 AVERLGRLDVLVNNAGL  107 (262)
T ss_pred             HHHHcCCCCEEEECCCC
Confidence            211 1258999999984

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.43  E-value=0.014  Score=49.04  Aligned_cols=104  Identities=23%  Similarity=0.255  Sum_probs=69.4

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC-CCC-C------------CchHHHHHHH
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP-DDE-P------------NKSISELVKE  262 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~-~~~-~------------~~~~~~~~~~  262 (332)
                      ..+|+|+|+|.+|..++.+++.+|+ +++..+...++++..+..++..+... .+. .            +......+.+
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~   98 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE   98 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence            3679999999999999999999999 99999999988888888877544331 110 0            1333334444


Q ss_pred             hcCCCCccEEEEcCC-----ChHH-HHHHHHHhccCCcEEEEEcCCCC
Q 043260          263 MTHGTGVDYGFECTG-----VASL-ISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       263 ~~~~~g~d~vid~~g-----~~~~-~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ...  .+|+||.+.-     .+.. ..+.++.++++ ..++.+....+
T Consensus        99 ~i~--~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvDis~D~g  143 (168)
T PF01262_consen   99 FIA--PADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVDISCDQG  143 (168)
T ss_dssp             HHH--H-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEETTGGGT
T ss_pred             HHh--hCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEEEEecCC
Confidence            332  4799996322     1222 26788889987 88998876544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.43  E-value=0.012  Score=52.73  Aligned_cols=79  Identities=24%  Similarity=0.260  Sum_probs=52.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-CCC-eee--CCCCCCCchHHHHHHHhcCC-CCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-GMT-DFI--NPDDEPNKSISELVKEMTHG-TGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-ga~-~v~--~~~~~~~~~~~~~~~~~~~~-~g~  269 (332)
                      ++++++|+|+ |++|..+++.+...|. +|++++++.++.+.+++. +.. ..+  |..+  .++..+.+.+.... ...
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRS--LDDHKEAVARCVAAFGKI   80 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence            4788999998 9999999999999999 899999988776655443 322 112  3322  23333333332111 258


Q ss_pred             cEEEEcCC
Q 043260          270 DYGFECTG  277 (332)
Q Consensus       270 d~vid~~g  277 (332)
                      |++|++.|
T Consensus        81 d~li~~Ag   88 (262)
T TIGR03325        81 DCLIPNAG   88 (262)
T ss_pred             CEEEECCC
Confidence            99999986

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06128 oxidoreductase; Provisional

Probab=96.43  E-value=0.049  Score=50.07  Aligned_cols=105  Identities=17%  Similarity=0.163  Sum_probs=63.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch--H----HHHHHcCCCee-e--CCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR--K----DKGEAFGMTDF-I--NPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~--~----~~~~~lga~~v-~--~~~~~~~~~~~~~~~~~~~  265 (332)
                      .++++||+|+ |++|..++..+...|+ +|+++.++.+.  .    +.+++.|.... +  |..+  .++..+.+.+...
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  130 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD--EAFCRQLVERAVK  130 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHHHHH
Confidence            5789999998 9999999999999999 88887654332  1    22334454322 2  2222  2333333332211


Q ss_pred             -CCCccEEEEcCCCh--------------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          266 -GTGVDYGFECTGVA--------------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       266 -~~g~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                       -.++|++|+++|..                          ..++.++..+.++ |+++.+++...
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~iv~~sS~~~  195 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPG-ASIINTGSIQS  195 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcC-CEEEEECCccc
Confidence             12589999998741                          0123444455666 89998877654

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.42  E-value=0.011  Score=54.02  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=38.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE  238 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~  238 (332)
                      .+|++++|+|+|+.+.+++..++..|+.+|+++.|+.+|.+.+.
T Consensus       124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La  167 (283)
T COG0169         124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELA  167 (283)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            35899999999999999999999999879999999998876543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.42  E-value=0.021  Score=46.94  Aligned_cols=98  Identities=23%  Similarity=0.232  Sum_probs=63.9

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      .++.+++|+|+|.+|...++.+...|..+|++++++.++.+. +++++... +....   .+..    +.  -.++|+|+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~-~~~~~---~~~~----~~--~~~~Dvvi   86 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG-IAIAY---LDLE----EL--LAEADLII   86 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc-cceee---cchh----hc--cccCCEEE
Confidence            457889999999999999998888864489999998877654 45555431 00000   1111    11  13689999


Q ss_pred             EcCCChHH----HHHHHHHhccCCcEEEEEcCCC
Q 043260          274 ECTGVASL----ISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       274 d~~g~~~~----~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .+++....    .......++++ ..++.++...
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~D~~~~~  119 (155)
T cd01065          87 NTTPVGMKPGDELPLPPSLLKPG-GVVYDVVYNP  119 (155)
T ss_pred             eCcCCCCCCCCCCCCCHHHcCCC-CEEEEcCcCC
Confidence            99987532    11223456776 7777786554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=96.41  E-value=0.048  Score=48.49  Aligned_cols=104  Identities=17%  Similarity=0.270  Sum_probs=75.5

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc----CCCe--eeCCCCCCCchHHHHHHHh
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF----GMTD--FINPDDEPNKSISELVKEM  263 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l----ga~~--v~~~~~~~~~~~~~~~~~~  263 (332)
                      ......+|++||=+++|. |-++..+++..|-.+|+++|.++.-++.+++-    |...  .+..+       ++.+.  
T Consensus        45 ~~~~~~~g~~vLDva~GT-Gd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~d-------Ae~LP--  114 (238)
T COG2226          45 SLLGIKPGDKVLDVACGT-GDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGD-------AENLP--  114 (238)
T ss_pred             HhhCCCCCCEEEEecCCc-cHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEec-------hhhCC--
Confidence            445566899999998876 89999999999877999999999888766542    2221  11111       11221  


Q ss_pred             cCCCCccEEEEcCCC------hHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          264 THGTGVDYGFECTGV------ASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       264 ~~~~g~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .+...||+|.-+.|-      +..+.++.+-|+|+ |+++.+-....
T Consensus       115 f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg-G~~~vle~~~p  160 (238)
T COG2226         115 FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG-GRLLVLEFSKP  160 (238)
T ss_pred             CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC-eEEEEEEcCCC
Confidence            344589999987774      25789999999998 99998877653

>PRK06196 oxidoreductase; Provisional

Probab=96.39  E-value=0.021  Score=52.98  Aligned_cols=80  Identities=19%  Similarity=0.292  Sum_probs=52.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCeee--CCCCCCCchHHHHHHHhcC-CCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDFI--NPDDEPNKSISELVKEMTH-GTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v~--~~~~~~~~~~~~~~~~~~~-~~g~d  270 (332)
                      .++++||+|+ |++|..++..+...|. +|++++++.++.+.+ .++..-..+  |..+  .+++.+.+.+... ..++|
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d--~~~v~~~~~~~~~~~~~iD  101 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLAD--LESVRAFAERFLDSGRRID  101 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC--HHHHHHHHHHHHhcCCCCC
Confidence            4678999998 9999999999988999 899999988766533 333211222  3322  2333333333221 12689


Q ss_pred             EEEEcCCC
Q 043260          271 YGFECTGV  278 (332)
Q Consensus       271 ~vid~~g~  278 (332)
                      ++|+++|.
T Consensus       102 ~li~nAg~  109 (315)
T PRK06196        102 ILINNAGV  109 (315)
T ss_pred             EEEECCCC
Confidence            99999873

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.058  Score=47.70  Aligned_cols=75  Identities=13%  Similarity=0.098  Sum_probs=49.5

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC-ee--eCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT-DF--INPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~-~v--~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      .+++|+|+ |++|...+..+...|+ +|+++++++++++.+.+.+.. ..  .|..+  .+++.+.+.+.. . ..|.++
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~-~-~~d~~i   76 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQSANIFTLAFDVTD--HPGTKAALSQLP-F-IPELWI   76 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCCCeEEEeeCCC--HHHHHHHHHhcc-c-CCCEEE
Confidence            46899998 9999998888888999 899999988877655443321 22  23322  344444444432 2 467777


Q ss_pred             EcCC
Q 043260          274 ECTG  277 (332)
Q Consensus       274 d~~g  277 (332)
                      .+.|
T Consensus        77 ~~ag   80 (240)
T PRK06101         77 FNAG   80 (240)
T ss_pred             EcCc
Confidence            7665

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.38  E-value=0.02  Score=52.01  Aligned_cols=80  Identities=15%  Similarity=0.303  Sum_probs=51.1

Q ss_pred             CCCEEEEECC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHH----HHHHcCCCeee--CCCCCCCchHHHHHHHhcCC
Q 043260          196 KGSSVAVFGL-G--AVGLGVMDRARIQGAAKIIGIDKNPCRKD----KGEAFGMTDFI--NPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       196 ~g~~vlV~G~-g--~vG~~~~~la~~~G~~~Vi~~~~~~~~~~----~~~~lga~~v~--~~~~~~~~~~~~~~~~~~~~  266 (332)
                      +++++||+|+ +  ++|.++++.+...|+ +|++++++++..+    +.+++|....+  |..+  .++..+.+.+....
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d--~~~v~~~~~~~~~~   82 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVED--IASVDAVFEALEKK   82 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCC--HHHHHHHHHHHHHH
Confidence            5788999998 4  899999999999999 8999887653322    22344543332  3322  33343333332211


Q ss_pred             -CCccEEEEcCCC
Q 043260          267 -TGVDYGFECTGV  278 (332)
Q Consensus       267 -~g~d~vid~~g~  278 (332)
                       ...|++|+++|.
T Consensus        83 ~g~iD~lVnnAG~   95 (271)
T PRK06505         83 WGKLDFVVHAIGF   95 (271)
T ss_pred             hCCCCEEEECCcc
Confidence             168999999873

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.37  E-value=0.043  Score=49.04  Aligned_cols=79  Identities=19%  Similarity=0.244  Sum_probs=50.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH---cCCCe-e--eCCCCCCCchHHHHHHHhcC-CC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA---FGMTD-F--INPDDEPNKSISELVKEMTH-GT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~---lga~~-v--~~~~~~~~~~~~~~~~~~~~-~~  267 (332)
                      +++++||+|+ |++|.++++.+...|+ +|+++++++...+..++   .+.+. .  .|..+  .++..+.+.+... -.
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLET--YAGAQAAMAAAVEAFG   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCC--HHHHHHHHHHHHHHcC
Confidence            4678999998 9999999999999998 89999887543333333   34332 1  23322  2333333333211 12


Q ss_pred             CccEEEEcCC
Q 043260          268 GVDYGFECTG  277 (332)
Q Consensus       268 g~d~vid~~g  277 (332)
                      .+|++|+++|
T Consensus        84 ~id~lv~nAg   93 (260)
T PRK12823         84 RIDVLINNVG   93 (260)
T ss_pred             CCeEEEECCc
Confidence            5899999987

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.37  E-value=0.031  Score=51.16  Aligned_cols=43  Identities=28%  Similarity=0.251  Sum_probs=37.2

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG  237 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~  237 (332)
                      ..+++++|+|+|+.+.+++..+...|+++|++++|+.+|.+.+
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~L  167 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence            3478899999999999999988889998999999998876644

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.36  E-value=0.029  Score=51.55  Aligned_cols=37  Identities=22%  Similarity=0.374  Sum_probs=32.5

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .++++++|+|+|++|.+++..+...|+++|++++++.
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3578899999999999999988899996799999986

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.36  E-value=0.083  Score=45.44  Aligned_cols=104  Identities=17%  Similarity=0.278  Sum_probs=64.1

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCe--eeCCCCCCCchHHHHHHH
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTD--FINPDDEPNKSISELVKE  262 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~~~~  262 (332)
                      ....+++++++||=+|+|. |..+..+++.....+|+++|.+++..+.+++    ++.+.  ++..      +..+.+..
T Consensus        33 ~~~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~------d~~~~~~~  105 (196)
T PRK07402         33 ISQLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG------SAPECLAQ  105 (196)
T ss_pred             HHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC------chHHHHhh
Confidence            3555778899998888855 5555566665433499999999988776543    55443  2222      12222222


Q ss_pred             hcCCCCccE-EEEcCCC-hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          263 MTHGTGVDY-GFECTGV-ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       263 ~~~~~g~d~-vid~~g~-~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +..  .+|. +++.... ...+..+.+.|+++ |+++.....
T Consensus       106 ~~~--~~d~v~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~~  144 (196)
T PRK07402        106 LAP--APDRVCIEGGRPIKEILQAVWQYLKPG-GRLVATASS  144 (196)
T ss_pred             CCC--CCCEEEEECCcCHHHHHHHHHHhcCCC-eEEEEEeec
Confidence            222  2344 4443222 35678999999998 998888644

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.35  E-value=0.036  Score=49.48  Aligned_cols=80  Identities=15%  Similarity=0.197  Sum_probs=51.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee-e--CCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF-I--NPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v-~--~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      +++++||+|+ |.+|..+++.+...|. +|+++++++++.+.+    ++.+.+.. +  |..+  .+++.+.+.+... -
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   82 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTN--EDAVNAGIDKVAERF   82 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4789999998 9999999999999999 899999888665432    33454322 2  2222  2222222222110 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ...|+||.+.|.
T Consensus        83 ~~~d~vi~~ag~   94 (262)
T PRK13394         83 GSVDILVSNAGI   94 (262)
T ss_pred             CCCCEEEECCcc
Confidence            258999999874

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=96.35  E-value=0.042  Score=49.37  Aligned_cols=99  Identities=20%  Similarity=0.223  Sum_probs=68.3

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC-eeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT-DFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ....+.++++||=+|+|. |..+..+++..+..+|+++|.++.-.+.+++.-.. .++..+      .    ..+.....
T Consensus        25 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d------~----~~~~~~~~   93 (258)
T PRK01683         25 ARVPLENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEAD------I----ASWQPPQA   93 (258)
T ss_pred             hhCCCcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECc------h----hccCCCCC
Confidence            445667889999999876 67777888776544999999999888877664321 222221      1    11222337


Q ss_pred             ccEEEEcCCC------hHHHHHHHHHhccCCcEEEEEc
Q 043260          269 VDYGFECTGV------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       269 ~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      +|+|+....-      ...+..+.+.|+++ |.+++..
T Consensus        94 fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~~~~~~  130 (258)
T PRK01683         94 LDLIFANASLQWLPDHLELFPRLVSLLAPG-GVLAVQM  130 (258)
T ss_pred             ccEEEEccChhhCCCHHHHHHHHHHhcCCC-cEEEEEC
Confidence            9999876542      24678899999998 9988753

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.014  Score=52.96  Aligned_cols=80  Identities=15%  Similarity=0.199  Sum_probs=53.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC--ee--eCCCCCCCchHHHHHHHhcCC-CCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT--DF--INPDDEPNKSISELVKEMTHG-TGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~--~v--~~~~~~~~~~~~~~~~~~~~~-~g~  269 (332)
                      .++++||+|+ |++|..+++.+...|. +|+++++++++.+.+.+....  ..  .|..+  .+++.+.+.+.... .++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~~~~   79 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTD--FDAIDAVVADAEATFGPI   79 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            3578999998 9999999999988998 899999988877655543222  12  23322  23333333322111 258


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |+||++.|.
T Consensus        80 d~vv~~ag~   88 (277)
T PRK06180         80 DVLVNNAGY   88 (277)
T ss_pred             CEEEECCCc
Confidence            999999885

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.056  Score=48.78  Aligned_cols=77  Identities=18%  Similarity=0.263  Sum_probs=49.4

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe----eeCCCCCCCchHHHHHHHhc-CCCC
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD----FINPDDEPNKSISELVKEMT-HGTG  268 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~----v~~~~~~~~~~~~~~~~~~~-~~~g  268 (332)
                      +++|+|+ |++|..+++.+...|+ +|+++++++++.+..    +..+...    ..|..+  .++..+.+.+.. ...+
T Consensus         2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   78 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISD--YDAVAAFAADIHAAHGS   78 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC--HHHHHHHHHHHHHhcCC
Confidence            6899998 9999999999999998 899999887765432    2334432    123333  222222222221 1125


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|++|++.|.
T Consensus        79 id~lv~~ag~   88 (272)
T PRK07832         79 MDVVMNIAGI   88 (272)
T ss_pred             CCEEEECCCC
Confidence            8999999974

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.34  E-value=0.023  Score=51.05  Aligned_cols=107  Identities=15%  Similarity=0.201  Sum_probs=64.8

Q ss_pred             CCCEEEEECCC---hHHHHHHHHHHHcCCCeEEEEcCCcchHH----HHHHcCCCeeeCCCCCCCchHHHHHHHhcCC-C
Q 043260          196 KGSSVAVFGLG---AVGLGVMDRARIQGAAKIIGIDKNPCRKD----KGEAFGMTDFINPDDEPNKSISELVKEMTHG-T  267 (332)
Q Consensus       196 ~g~~vlV~G~g---~vG~~~~~la~~~G~~~Vi~~~~~~~~~~----~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~-~  267 (332)
                      .|+++||+|++   ++|.++++.+...|+ +|++++++++..+    ..++++....+..+-.+.++..+.+.+.... .
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   87 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG   87 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence            57889999973   899999999999999 8999888754322    2233443233322211233343333332211 1


Q ss_pred             CccEEEEcCCCh--------------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          268 GVDYGFECTGVA--------------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       268 g~d~vid~~g~~--------------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ..|++|+++|..              +               ..+.++..++.+ |+++.+++...
T Consensus        88 ~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~-g~Ii~iss~~~  152 (258)
T PRK07533         88 RLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNG-GSLLTMSYYGA  152 (258)
T ss_pred             CCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccC-CEEEEEecccc
Confidence            589999998731              0               123455566666 88888876543

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.34  E-value=0.021  Score=50.79  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=52.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe--ee--CCCCCCCchHHHHHHHhcC-CCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD--FI--NPDDEPNKSISELVKEMTH-GTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~--v~--~~~~~~~~~~~~~~~~~~~-~~g~  269 (332)
                      +++++||+|+ |.+|..+++.+...|+ +|++++++++..+...++....  .+  |..+  .+++.+.+.+... -.++
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~~   90 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSD--SQSVEAAVAAVISAFGRI   90 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4779999998 9999999999988998 8999998877655555443221  22  3222  2333333332211 1258


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|.++|.
T Consensus        91 d~vi~~ag~   99 (255)
T PRK06841         91 DILVNSAGV   99 (255)
T ss_pred             CEEEECCCC
Confidence            999999874

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.34  E-value=0.027  Score=49.86  Aligned_cols=82  Identities=22%  Similarity=0.276  Sum_probs=51.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHHcCCC-eeeCCCCCCCchHHHHHHHhcC-CCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR--KDKGEAFGMT-DFINPDDEPNKSISELVKEMTH-GTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~--~~~~~~lga~-~v~~~~~~~~~~~~~~~~~~~~-~~g~d  270 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++...  .+.+++.+.. .++..+-...+++...+.+... -.++|
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   82 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID   82 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            5789999998 9999999999999999 89999876521  2333444532 2222221123444433333221 12589


Q ss_pred             EEEEcCCC
Q 043260          271 YGFECTGV  278 (332)
Q Consensus       271 ~vid~~g~  278 (332)
                      ++|++.|.
T Consensus        83 ~li~~ag~   90 (248)
T TIGR01832        83 ILVNNAGI   90 (248)
T ss_pred             EEEECCCC
Confidence            99998874

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.021  Score=51.33  Aligned_cols=80  Identities=13%  Similarity=0.108  Sum_probs=52.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-H---cCCC-ee--eCCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-A---FGMT-DF--INPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~---lga~-~v--~~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+. +   .+.. .+  .|..+  .++..+.+.+... -
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   85 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAH--PEATAGLAGQAVEAF   85 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            5789999998 9999999999999999 9999999887665332 2   2322 22  23332  2333322332211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      .++|+||+++|.
T Consensus        86 ~~id~vi~~Ag~   97 (263)
T PRK07814         86 GRLDIVVNNVGG   97 (263)
T ss_pred             CCCCEEEECCCC
Confidence            268999998873

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.32  E-value=0.058  Score=48.44  Aligned_cols=105  Identities=14%  Similarity=0.238  Sum_probs=63.3

Q ss_pred             CCCEEEEECC---ChHHHHHHHHHHHcCCCeEEEEcCCc---chHH-HHHHc-CCC-ee--eCCCCCCCchHHHHHHHhc
Q 043260          196 KGSSVAVFGL---GAVGLGVMDRARIQGAAKIIGIDKNP---CRKD-KGEAF-GMT-DF--INPDDEPNKSISELVKEMT  264 (332)
Q Consensus       196 ~g~~vlV~G~---g~vG~~~~~la~~~G~~~Vi~~~~~~---~~~~-~~~~l-ga~-~v--~~~~~~~~~~~~~~~~~~~  264 (332)
                      .|++++|+|+   +++|.++++.+...|+ +|++++++.   ++++ +.+++ +.. ..  .|..+  .++..+.+.+..
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~   82 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS--DEEITACFETIK   82 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC--HHHHHHHHHHHH
Confidence            4788999987   5999999999999999 898887653   2333 22333 222 12  23322  344444444332


Q ss_pred             CC-CCccEEEEcCCCh--------------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          265 HG-TGVDYGFECTGVA--------------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       265 ~~-~g~d~vid~~g~~--------------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .. ..+|+++++.|..              +               ..+..+..+.++ |+++.+++..+
T Consensus        83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-g~Iv~isS~~~  151 (257)
T PRK08594         83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEG-GSIVTLTYLGG  151 (257)
T ss_pred             HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccC-ceEEEEcccCC
Confidence            21 2589999987631              0               112344456666 99998887654

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.32  E-value=0.025  Score=50.05  Aligned_cols=79  Identities=18%  Similarity=0.230  Sum_probs=52.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-e--eCCCCCCCchHHHHHHHhcCC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-F--INPDDEPNKSISELVKEMTHG-  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~~~~~~~~-  266 (332)
                      +++++||+|+ |++|..+++.+...|. +|++++++.++.+.+    ++.+... .  .|..+  .++..+.+.+.... 
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD--EEDVEATFAQIAEDF   80 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4789999998 9999999999999998 899999987765433    2334432 2  23222  23333333332211 


Q ss_pred             CCccEEEEcCC
Q 043260          267 TGVDYGFECTG  277 (332)
Q Consensus       267 ~g~d~vid~~g  277 (332)
                      .++|.||+++|
T Consensus        81 ~~id~vi~~ag   91 (253)
T PRK08217         81 GQLNGLINNAG   91 (253)
T ss_pred             CCCCEEEECCC
Confidence            25899999987

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.028  Score=50.46  Aligned_cols=80  Identities=14%  Similarity=0.260  Sum_probs=51.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-Hc--CCC-eee--CCCCCCCchHHHHHHHhcCCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AF--GMT-DFI--NPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~l--ga~-~v~--~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ++.++||+|+ |++|...+..+...|. +|+++++++++.+.+. ++  +.. ..+  |..+  .++..+.......-..
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTS--EAGREAVLARAREMGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHhcCC
Confidence            4678999998 9999999999999998 8999999887765443 22  211 122  2222  2333222222211236


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|.++.++|.
T Consensus        81 id~lv~~ag~   90 (263)
T PRK09072         81 INVLINNAGV   90 (263)
T ss_pred             CCEEEECCCC
Confidence            8999999875

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.021  Score=50.90  Aligned_cols=80  Identities=15%  Similarity=0.187  Sum_probs=52.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCCe-e--eCCCCCCCchHHHHHHHhcCC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMTD-F--INPDDEPNKSISELVKEMTHG-  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~~~~~~~~-  266 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+.    +.+.+. .  .|..+  .+++.+.+.+.... 
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ--HQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4788999998 9999999999999999 8999999887665332    223221 2  23322  23333333332111 


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      .++|++|.+.|.
T Consensus        85 g~id~lv~~ag~   96 (253)
T PRK05867         85 GGIDIAVCNAGI   96 (253)
T ss_pred             CCCCEEEECCCC
Confidence            158999998874

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.30  E-value=0.034  Score=49.04  Aligned_cols=105  Identities=19%  Similarity=0.198  Sum_probs=63.4

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchH-----H---HHHHcC---------------CCeeeCCCCCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRK-----D---KGEAFG---------------MTDFINPDDEP  252 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~-----~---~~~~lg---------------a~~v~~~~~~~  252 (332)
                      +...|+|+|.|++|-+++..+.+.|++++.++|-++--.     +   +....|               ...-+...+  
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~--  106 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIN--  106 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehH--
Confidence            346799999999999999999999999999998654211     1   111112               111111111  


Q ss_pred             CchH-HHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          253 NKSI-SELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       253 ~~~~-~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                       +-+ .+-+.++... +||+||||.-+-..=-.++....+.+-.++..+..++
T Consensus       107 -~f~t~en~~~~~~~-~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~  157 (263)
T COG1179         107 -DFITEENLEDLLSK-GFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGG  157 (263)
T ss_pred             -hhhCHhHHHHHhcC-CCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccC
Confidence             111 1223444544 8999999998754444555544444256676665554

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.033  Score=48.65  Aligned_cols=77  Identities=19%  Similarity=0.348  Sum_probs=53.3

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe-eeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD-FINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      ++++|+|+ |.+|..+++.+...|+ +|++++++.++.+.++..+... ..|..+  .+++.+.+.+.. +.++|++|.+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~-~~~~d~vi~~   77 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEALALDVAD--PASVAGLAWKLD-GEALDAAVYV   77 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceEEEecCCC--HHHHHHHHHHhc-CCCCCEEEEC
Confidence            46899998 9999999998888898 8999999887777666665432 223333  233333333333 3369999998


Q ss_pred             CCC
Q 043260          276 TGV  278 (332)
Q Consensus       276 ~g~  278 (332)
                      .|.
T Consensus        78 ag~   80 (222)
T PRK06953         78 AGV   80 (222)
T ss_pred             CCc
Confidence            775

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.29  E-value=0.026  Score=51.38  Aligned_cols=70  Identities=20%  Similarity=0.155  Sum_probs=50.2

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccE
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      ....+++++|+|+|+.+.+++..+...|+.+|+++.|+.+|.+.+ +.++.+    .     .   +.+    ....+|+
T Consensus       118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~----~-----~---~~~----~~~~~dl  181 (272)
T PRK12550        118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYE----W-----R---PDL----GGIEADI  181 (272)
T ss_pred             CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCc----c-----h---hhc----ccccCCE
Confidence            344567899999999999999999999998899999998877644 344311    0     0   011    1125899


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      ||+|++.
T Consensus       182 vINaTp~  188 (272)
T PRK12550        182 LVNVTPI  188 (272)
T ss_pred             EEECCcc
Confidence            9998864

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.025  Score=51.97  Aligned_cols=80  Identities=18%  Similarity=0.263  Sum_probs=52.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCC-eee--CCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMT-DFI--NPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~-~v~--~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      .+++++|+|+ |++|.+.++.+...|+ +|++++++.++.+.+.    +.+.+ .++  |..+  .+++.+.+.+... -
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  115 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSD--LDAVDALVADVEKRI  115 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4578999998 9999999999988998 9999999887765432    23332 122  2222  2333333332211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ..+|++|+++|.
T Consensus       116 g~id~li~~AG~  127 (293)
T PRK05866        116 GGVDILINNAGR  127 (293)
T ss_pred             CCCCEEEECCCC
Confidence            158999999874

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.29  E-value=0.015  Score=52.98  Aligned_cols=97  Identities=20%  Similarity=0.165  Sum_probs=71.3

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      .+|.|+|.|.+|.-++.+|..+|+ +|.+.+.+.+|++.+..+-...+ .-++.  +.++.+.+      ..+|+||.++
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st--~~~iee~v------~~aDlvIgaV  239 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYST--PSNIEEAV------KKADLVIGAV  239 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcC--HHHHHHHh------hhccEEEEEE
Confidence            458888999999999999999999 99999999999988876433332 22221  24444433      2589999865


Q ss_pred             CCh-----H-HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          277 GVA-----S-LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       277 g~~-----~-~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      =.+     . ..++..+.++|+ +.++.+....+
T Consensus       240 LIpgakaPkLvt~e~vk~MkpG-sVivDVAiDqG  272 (371)
T COG0686         240 LIPGAKAPKLVTREMVKQMKPG-SVIVDVAIDQG  272 (371)
T ss_pred             EecCCCCceehhHHHHHhcCCC-cEEEEEEEcCC
Confidence            322     1 357889999998 99999976655

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.29  E-value=0.024  Score=51.05  Aligned_cols=79  Identities=16%  Similarity=0.258  Sum_probs=49.3

Q ss_pred             CCCEEEEECC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCeee--CCCCCCCchHHHHHHHhcCC
Q 043260          196 KGSSVAVFGL-G--AVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDFI--NPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       196 ~g~~vlV~G~-g--~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v~--~~~~~~~~~~~~~~~~~~~~  266 (332)
                      .|++++|+|+ +  ++|.++++.+...|+ +|++++++++..+.+    ++.|....+  |..+  .++..+.+.+....
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~--~~~v~~~~~~~~~~   83 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTN--PKSISNLFDDIKEK   83 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCC--HHHHHHHHHHHHHH
Confidence            5788999998 4  799999988888999 898887764222222    333543322  3332  34444444332221


Q ss_pred             -CCccEEEEcCC
Q 043260          267 -TGVDYGFECTG  277 (332)
Q Consensus       267 -~g~d~vid~~g  277 (332)
                       ..+|+++++.|
T Consensus        84 ~g~iDilVnnag   95 (260)
T PRK06603         84 WGSFDFLLHGMA   95 (260)
T ss_pred             cCCccEEEEccc
Confidence             15899999887

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.027  Score=49.69  Aligned_cols=81  Identities=16%  Similarity=0.106  Sum_probs=52.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-eeCCCCCCCchHHHHHHHhcC--CC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FINPDDEPNKSISELVKEMTH--GT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~~~~~~~~~~~~~~~~~~~~--~~  267 (332)
                      +|++++|+|+ +++|.+.+..+...|+ +|++++++.++++.+    ++.+.+. .+..+....++..+.+.+...  +.
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR   82 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4788999998 9999999999988999 899999988776533    2345332 221111123444333333221  12


Q ss_pred             CccEEEEcCC
Q 043260          268 GVDYGFECTG  277 (332)
Q Consensus       268 g~d~vid~~g  277 (332)
                      .+|++|++.|
T Consensus        83 ~iD~li~nag   92 (227)
T PRK08862         83 APDVLVNNWT   92 (227)
T ss_pred             CCCEEEECCc
Confidence            5899999986

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.25  E-value=0.022  Score=53.11  Aligned_cols=81  Identities=20%  Similarity=0.260  Sum_probs=53.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH----cCCCe----eeCCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA----FGMTD----FINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~----lga~~----v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      .|++++|+|+ +++|.+.++.+...|+ +|+++++++++++.+ ++    .+...    ..|..+ +..+..+.+.+..+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~l~~~~~  129 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG-DIDEGVKRIKETIE  129 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC-CcHHHHHHHHHHhc
Confidence            5889999998 9999999988888999 899999999887643 22    22111    123321 11233444555444


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      +...|++++++|.
T Consensus       130 ~~didilVnnAG~  142 (320)
T PLN02780        130 GLDVGVLINNVGV  142 (320)
T ss_pred             CCCccEEEEecCc
Confidence            4456799998873

>PRK09242 tropinone reductase; Provisional

Probab=96.22  E-value=0.097  Score=46.66  Aligned_cols=80  Identities=11%  Similarity=0.173  Sum_probs=52.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-Hc-----CCCe-ee--CCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AF-----GMTD-FI--NPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~l-----ga~~-v~--~~~~~~~~~~~~~~~~~~~  265 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+. ++     +.+. .+  |..+  .++..+.+.+...
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   84 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSD--DEDRRAILDWVED   84 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4789999998 9999999999999999 8999998887655332 22     2221 12  3322  2333333332211


Q ss_pred             -CCCccEEEEcCCC
Q 043260          266 -GTGVDYGFECTGV  278 (332)
Q Consensus       266 -~~g~d~vid~~g~  278 (332)
                       -.++|++|.+.|.
T Consensus        85 ~~g~id~li~~ag~   98 (257)
T PRK09242         85 HWDGLHILVNNAGG   98 (257)
T ss_pred             HcCCCCEEEECCCC
Confidence             1258999999984

>PRK06484 short chain dehydrogenase; Validated

Probab=96.21  E-value=0.042  Score=54.60  Aligned_cols=80  Identities=21%  Similarity=0.339  Sum_probs=55.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCe---eeCCCCCCCchHHHHHHHhcCC-CCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTD---FINPDDEPNKSISELVKEMTHG-TGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~---v~~~~~~~~~~~~~~~~~~~~~-~g~  269 (332)
                      +++++||+|+ +++|.++++.+...|+ +|++++++.++++. .++++...   ..|..+  .+++.+.+.+.... .++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSD--EAQIREGFEQLHREFGRI   80 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence            5788999998 9999999999999999 99999998887654 45565432   223332  34444444332211 258


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|++.|.
T Consensus        81 D~li~nag~   89 (520)
T PRK06484         81 DVLVNNAGV   89 (520)
T ss_pred             CEEEECCCc
Confidence            999999874

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.21  E-value=0.031  Score=52.52  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=32.1

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ...+|+|+|+|++|..++..+..+|..+++++|.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            446799999999999999999999998999999864

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.21  E-value=0.011  Score=57.79  Aligned_cols=95  Identities=12%  Similarity=0.113  Sum_probs=62.8

Q ss_pred             HhhCCCCCCEEE----EECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC-eeeCCCCCCCchHHHHHHHh
Q 043260          190 KEFKVEKGSSVA----VFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT-DFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       190 ~~~~~~~g~~vl----V~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~~~~~  263 (332)
                      ...+.++|+++|    |+|+ |++|.+++|+++..|+ +|+.+...+.+....+..+.+ .+++...   ..+.+.+..+
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~l~~~  102 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG---ITDPADLKAL  102 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC---CCCHHHHHHH
Confidence            345778888887    8876 9999999999999999 899887666544333333444 3444443   2233333322


Q ss_pred             cCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          264 THGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .               ..+...++.+.++ |+++.++....
T Consensus       103 ~---------------~~~~~~l~~l~~~-griv~i~s~~~  127 (450)
T PRK08261        103 Y---------------EFFHPVLRSLAPC-GRVVVLGRPPE  127 (450)
T ss_pred             H---------------HHHHHHHHhccCC-CEEEEEccccc
Confidence            1               3456677778887 88888887653

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.19  E-value=0.024  Score=50.49  Aligned_cols=81  Identities=12%  Similarity=0.158  Sum_probs=51.3

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCC-eeeCCCCCCCchHHHHHHHhcC-CCCc
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMT-DFINPDDEPNKSISELVKEMTH-GTGV  269 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~-~v~~~~~~~~~~~~~~~~~~~~-~~g~  269 (332)
                      |+++||+|+ |++|...++.+...|. +|+++++++++.+.+.    +.+.. ..+..+-.+.+++.+.+.+... -..+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            468999998 9999999999999999 9999998877655332    22322 2222211112333333333211 1258


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|++.|.
T Consensus        80 d~lI~~ag~   88 (252)
T PRK07677         80 DALINNAAG   88 (252)
T ss_pred             cEEEECCCC
Confidence            999999873

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.19  E-value=0.037  Score=46.85  Aligned_cols=95  Identities=20%  Similarity=0.347  Sum_probs=63.3

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC--CeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM--TDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga--~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      .+|.|+|+ |-+|...++-|+..|. +|+++.+++.|....+..-.  ..+++.     ....+.   +   .|+|+||+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i~q~Difd~-----~~~a~~---l---~g~DaVIs   68 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGVTILQKDIFDL-----TSLASD---L---AGHDAVIS   68 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhccccccceeecccccCh-----hhhHhh---h---cCCceEEE
Confidence            36889998 9999999999999999 99999999988754321110  012221     111122   2   37999999


Q ss_pred             cCCCh---------HHHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          275 CTGVA---------SLISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       275 ~~g~~---------~~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      +.+..         ...+.+++.|+.- --|++.+|..+.
T Consensus        69 A~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGS  108 (211)
T COG2910          69 AFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGS  108 (211)
T ss_pred             eccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccc
Confidence            88754         1234566667663 148888887654

>PRK06701 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.063  Score=49.17  Aligned_cols=107  Identities=19%  Similarity=0.192  Sum_probs=63.8

Q ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HH----HHHHcCCCe-ee--CCCCCCCchHHHHHHHhc
Q 043260          194 VEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR-KD----KGEAFGMTD-FI--NPDDEPNKSISELVKEMT  264 (332)
Q Consensus       194 ~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~-~~----~~~~lga~~-v~--~~~~~~~~~~~~~~~~~~  264 (332)
                      .-+++++||+|+ |.+|..++..+...|+ +|++++++.++ .+    .++..|.+. ++  |..+  .+++.+.+.+..
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~i~  119 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSD--EAFCKDAVEETV  119 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHH
Confidence            345789999998 9999999998888998 89888876532 22    223334332 22  2222  233323232221


Q ss_pred             C-CCCccEEEEcCCCh--------------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          265 H-GTGVDYGFECTGVA--------------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       265 ~-~~g~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      . -.++|++|.++|..                          ..++.++..+++. |+++.+++...
T Consensus       120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~-g~iV~isS~~~  185 (290)
T PRK06701        120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQG-SAIINTGSITG  185 (290)
T ss_pred             HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhC-CeEEEEecccc
Confidence            1 12589999988741                          0122334455666 89999887543

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.17  E-value=0.079  Score=48.06  Aligned_cols=103  Identities=19%  Similarity=0.242  Sum_probs=62.3

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---HcCCCe-ee--CCCCCCCchHHHHHHHhcCCCCc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-E---AFGMTD-FI--NPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~---~lga~~-v~--~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      +++++|.|+|++|..++..+. .|. +|+++++++++++.+ +   +.|.+. ++  |..+  .+++.+.+.+...-.++
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSS--RESVKALAATAQTLGPV   77 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHhcCCC
Confidence            457888899999999888885 788 999999987765432 2   234321 22  3332  23444444332111268


Q ss_pred             cEEEEcCCChH------------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          270 DYGFECTGVAS------------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       270 d~vid~~g~~~------------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      |++|+++|...                  .++.++..+.++ |+++.+++...
T Consensus        78 d~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-g~iv~isS~~~  129 (275)
T PRK06940         78 TGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPG-GAGVVIASQSG  129 (275)
T ss_pred             CEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhC-CCEEEEEeccc
Confidence            99999998421                  123344455566 77777765543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.17  E-value=0.02  Score=49.44  Aligned_cols=98  Identities=21%  Similarity=0.286  Sum_probs=61.6

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc----CCCeeeCCCCCCCchHHHHHHHhcC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF----GMTDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      +.....++.+||-+|+|. |..+..+++. |. +|+++|.+++-.+.+++.    +...+ ....   .++    .+..-
T Consensus        24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v-~~~~---~d~----~~~~~   92 (197)
T PRK11207         24 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDNL-HTAV---VDL----NNLTF   92 (197)
T ss_pred             HhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCcc-eEEe---cCh----hhCCc
Confidence            334456778999999977 7777777764 77 999999998876655442    32211 1110   111    11111


Q ss_pred             CCCccEEEEcCCC--------hHHHHHHHHHhccCCcEEEEE
Q 043260          266 GTGVDYGFECTGV--------ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       266 ~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      ...||+|+.+..-        ...+..+.+.|+++ |.++++
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~~~~~  133 (197)
T PRK11207         93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG-GYNLIV  133 (197)
T ss_pred             CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC-cEEEEE
Confidence            2369999986441        24567888899998 986543

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.16  E-value=0.088  Score=48.81  Aligned_cols=96  Identities=17%  Similarity=0.178  Sum_probs=61.6

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      +|+|+|+ |-+|..+++.+...|. +|++++++.++.......+.+.+. |..+  ++++    .+...  ++|+||+++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d--~~~l----~~al~--g~d~Vi~~~   72 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVYGDLSL--PETL----PPSFK--GVTAIIDAS   72 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEECCCCC--HHHH----HHHHC--CCCEEEECC
Confidence            6999998 9999999999988998 899999887665554555654332 2222  1222    22222  589999987


Q ss_pred             CChH------------HHHHHHHHhccCC-cEEEEEcCCC
Q 043260          277 GVAS------------LISEALEATKLGK-GKVMAIGAAN  303 (332)
Q Consensus       277 g~~~------------~~~~~~~~l~~~~-G~~v~~G~~~  303 (332)
                      +...            ....+++.++..+ .+++.++..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~  112 (317)
T CHL00194         73 TSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILN  112 (317)
T ss_pred             CCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecccc
Confidence            6320            1134455555541 3788887743

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.15  E-value=0.028  Score=55.27  Aligned_cols=77  Identities=26%  Similarity=0.406  Sum_probs=55.6

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc---------------------chHHHHHHcCCCeeeCCCCCCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP---------------------CRKDKGEAFGMTDFINPDDEPNK  254 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~---------------------~~~~~~~~lga~~v~~~~~~~~~  254 (332)
                      ++++|+|+|+|+.|+.++..++..|. +|++++..+                     ...+.++++|.+..++....  .
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~--~  216 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG--R  216 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeC--C
Confidence            67899999999999999999999999 898888654                     23467788898766554320  1


Q ss_pred             hHHHHHHHhcCCCCccEEEEcCCCh
Q 043260          255 SISELVKEMTHGTGVDYGFECTGVA  279 (332)
Q Consensus       255 ~~~~~~~~~~~~~g~d~vid~~g~~  279 (332)
                      ++  .+.++.  .++|.||.++|..
T Consensus       217 ~~--~~~~~~--~~~D~vilAtGa~  237 (467)
T TIGR01318       217 DI--SLDDLL--EDYDAVFLGVGTY  237 (467)
T ss_pred             cc--CHHHHH--hcCCEEEEEeCCC
Confidence            11  112222  2699999999975

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.15  E-value=0.13  Score=44.75  Aligned_cols=92  Identities=17%  Similarity=0.135  Sum_probs=60.2

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC-RKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~-~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      .|.+|||+|+|.+|..-++.+...|+ +|++++.... .++.+.+.|--..+. .+   .. .+.   +   .++|+||-
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~i~~~~-~~---~~-~~d---l---~~~~lVi~   75 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGGITWLA-RC---FD-ADI---L---EGAFLVIA   75 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCCEEEEe-CC---CC-HHH---h---CCcEEEEE
Confidence            46799999999999999999999998 8999876543 223333334212221 11   11 111   1   26999999


Q ss_pred             cCCChHHHHHHHHHhccCCcEEEEEc
Q 043260          275 CTGVASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       275 ~~g~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      +++.+..-.......+.. |..+..-
T Consensus        76 at~d~~ln~~i~~~a~~~-~ilvn~~  100 (205)
T TIGR01470        76 ATDDEELNRRVAHAARAR-GVPVNVV  100 (205)
T ss_pred             CCCCHHHHHHHHHHHHHc-CCEEEEC
Confidence            999964545666666665 7666544

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.14  E-value=0.047  Score=49.40  Aligned_cols=79  Identities=11%  Similarity=0.126  Sum_probs=51.1

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCC-eee--CCCCCCCchHHHHHHHhcC-CCCcc
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMT-DFI--NPDDEPNKSISELVKEMTH-GTGVD  270 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~-~v~--~~~~~~~~~~~~~~~~~~~-~~g~d  270 (332)
                      ++++||+|+ |.+|..+++.+...|. +|++++++.++++.+.+ ++.. ..+  |..+  .+++.+.+..... -.++|
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~d   79 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTD--RAAVFAAVETAVEHFGRLD   79 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCC--HHHHHHHHHHHHHHcCCCC
Confidence            468999998 9999999998888898 89999998877665433 3322 122  2222  2333333332211 12589


Q ss_pred             EEEEcCCC
Q 043260          271 YGFECTGV  278 (332)
Q Consensus       271 ~vid~~g~  278 (332)
                      .+|.+.|.
T Consensus        80 ~vi~~ag~   87 (275)
T PRK08263         80 IVVNNAGY   87 (275)
T ss_pred             EEEECCCC
Confidence            99999884

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.14  E-value=0.041  Score=49.33  Aligned_cols=36  Identities=25%  Similarity=0.393  Sum_probs=31.8

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ...+|+|+|+|++|..++..+...|..+++++|.+.
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            447899999999999999999999999999998654

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.14  E-value=0.035  Score=49.66  Aligned_cols=79  Identities=11%  Similarity=0.098  Sum_probs=51.3

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCC--C-eee--CCCCCCCchHHHHHHHhcCC-CC
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGM--T-DFI--NPDDEPNKSISELVKEMTHG-TG  268 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga--~-~v~--~~~~~~~~~~~~~~~~~~~~-~g  268 (332)
                      ++++||+|+ |++|..++..+...|+ +|++++++.++.+... ++..  + ..+  |..+  .+++.+.+.+.... ..
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~g~   78 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRD--ADALAAAAADFIAAHGL   78 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC--HHHHHHHHHHHHHhCCC
Confidence            468999998 9999999999988999 9999999887765443 2321  1 122  3322  23343333332211 14


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|++|+++|.
T Consensus        79 id~lv~~ag~   88 (257)
T PRK07024         79 PDVVIANAGI   88 (257)
T ss_pred             CCEEEECCCc
Confidence            8999998873

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.12  E-value=0.046  Score=48.12  Aligned_cols=79  Identities=15%  Similarity=0.159  Sum_probs=51.4

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHHcCCCee-eCCCCCCCchHHHHHHHhcCC-CCccEE
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK-DKGEAFGMTDF-INPDDEPNKSISELVKEMTHG-TGVDYG  272 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~-~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~~-~g~d~v  272 (332)
                      ++++||+|+ |++|..+++.+...|+ +|+++++++++. +.+++.|...+ .|..+  .++..+.+.+.... .++|++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~l   78 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQCIQADFST--NAGIMAFIDELKQHTDGLRAI   78 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCEEEEcCCCC--HHHHHHHHHHHHhhCCCccEE
Confidence            468999998 9999999999988999 999998876543 33444554321 22222  23444333333221 158999


Q ss_pred             EEcCCC
Q 043260          273 FECTGV  278 (332)
Q Consensus       273 id~~g~  278 (332)
                      +++.|.
T Consensus        79 v~~ag~   84 (236)
T PRK06483         79 IHNASD   84 (236)
T ss_pred             EECCcc
Confidence            999874

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.11  E-value=0.073  Score=45.72  Aligned_cols=99  Identities=21%  Similarity=0.256  Sum_probs=58.8

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-Hc----CCCee-eCCCCCCCchHHHHHHHhcCCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AF----GMTDF-INPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~l----ga~~v-~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      -++.+++|+|+ |.+|..++..+...|. +|+++.++.++.+.+. ++    +.... .+..+  .++    +.+..  .
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~----~~~~~--~   96 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGAVETSD--DAA----RAAAI--K   96 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC--HHH----HHHHH--h
Confidence            35789999997 9999998888888897 9999999887765432 23    22211 11111  122    22222  2


Q ss_pred             CccEEEEcCCChHHHHHHHH-HhccCCcEEEEEcCCC
Q 043260          268 GVDYGFECTGVASLISEALE-ATKLGKGKVMAIGAAN  303 (332)
Q Consensus       268 g~d~vid~~g~~~~~~~~~~-~l~~~~G~~v~~G~~~  303 (332)
                      ++|+||.+++.+........ ..+++ -.++.+..+.
T Consensus        97 ~~diVi~at~~g~~~~~~~~~~~~~~-~vv~D~~~~~  132 (194)
T cd01078          97 GADVVFAAGAAGVELLEKLAWAPKPL-AVAADVNAVP  132 (194)
T ss_pred             cCCEEEECCCCCceechhhhcccCce-eEEEEccCCC
Confidence            58999999887532111222 22232 3566665554

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.10  E-value=0.037  Score=49.46  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=31.4

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ..+|+|+|+|++|..+++.+..+|.++++++|.+.
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            47899999999999999999999999999988654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=96.10  E-value=0.023  Score=51.74  Aligned_cols=130  Identities=21%  Similarity=0.285  Sum_probs=86.6

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC--------CCchHHHHHHHhc
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE--------PNKSISELVKEMT  264 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~--------~~~~~~~~~~~~~  264 (332)
                      ..-++.++++.|.|..|++++..++..|+ -|...+...++.+..+++|+...-..+.+        .++++.+.-.++.
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiata~~lG~-iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~  238 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIATAVRLGA-IVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV  238 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHhhcce-EEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence            34566788999999999999999999999 77777778888888888887544322221        2334433222221


Q ss_pred             --CCCCccEEEEcCCCh-----HH-HHHHHHHhccCCcEEEEEcCCCCCcccCChHh-H-hc-CcEEEEee
Q 043260          265 --HGTGVDYGFECTGVA-----SL-ISEALEATKLGKGKVMAIGAANEAKVPLNFPA-I-AL-GRNLKGTI  324 (332)
Q Consensus       265 --~~~g~d~vid~~g~~-----~~-~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~-~-~~-~~~i~g~~  324 (332)
                        .-+++|+||-+.--+     .. .....+.++|+ +.+|.+....+.+.+..-.. + .. +++|+|-.
T Consensus       239 a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpG-SViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~  308 (356)
T COG3288         239 AEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPG-SVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYT  308 (356)
T ss_pred             HHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCC-cEEEEehhhcCCCcccccCCeEEEeCCeEEEeec
Confidence              124699999875432     22 36888999998 99999976655333333222 2 22 77888864

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.10  E-value=0.02  Score=52.28  Aligned_cols=95  Identities=19%  Similarity=0.173  Sum_probs=61.0

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      ..+++++|+|+|++|.+++..+...|+.+|++++++.++.+.+ ++++....+.. .   .+    ..+.  -..+|+||
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~---~~----~~~~--~~~~DivI  190 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-D---LE----LQEE--LADFDLII  190 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-c---cc----chhc--cccCCEEE
Confidence            4567899999999999999999999966999999998887644 34432110111 0   00    1111  12589999


Q ss_pred             EcCCChHH-----HHHHHHHhccCCcEEEEEc
Q 043260          274 ECTGVASL-----ISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       274 d~~g~~~~-----~~~~~~~l~~~~G~~v~~G  300 (332)
                      ++++..-.     .....+.+.+. ..++.+-
T Consensus       191 naTp~g~~~~~~~~~~~~~~l~~~-~~v~Div  221 (278)
T PRK00258        191 NATSAGMSGELPLPPLPLSLLRPG-TIVYDMI  221 (278)
T ss_pred             ECCcCCCCCCCCCCCCCHHHcCCC-CEEEEee
Confidence            99876310     01234566766 6666663

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.09  E-value=0.034  Score=56.96  Aligned_cols=77  Identities=26%  Similarity=0.377  Sum_probs=56.9

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc---------------------hHHHHHHcCCCeeeCCCCCCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC---------------------RKDKGEAFGMTDFINPDDEPNK  254 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~---------------------~~~~~~~lga~~v~~~~~~~~~  254 (332)
                      .+++|+|+|+|+.|+.++..++..|. +|+++++.+.                     +.++++++|.+..++.......
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            48999999999999999999999999 8999987763                     4567788898766655321111


Q ss_pred             hHHHHHHHhcCCCCccEEEEcCCCh
Q 043260          255 SISELVKEMTHGTGVDYGFECTGVA  279 (332)
Q Consensus       255 ~~~~~~~~~~~~~g~d~vid~~g~~  279 (332)
                      ++    .++.  .++|.||.++|..
T Consensus       388 ~~----~~l~--~~~DaV~latGa~  406 (639)
T PRK12809        388 TF----SDLT--SEYDAVFIGVGTY  406 (639)
T ss_pred             CH----HHHH--hcCCEEEEeCCCC
Confidence            22    2222  2699999999974

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.09  E-value=0.036  Score=53.05  Aligned_cols=91  Identities=19%  Similarity=0.273  Sum_probs=57.9

Q ss_pred             EEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHH--cCCC---eeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          200 VAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEA--FGMT---DFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~--lga~---~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      |+|+|+|.+|..+++.+...+- .+|++.+++.++.+.+.+  .+..   ..+|..     +.. .+.++..  +.|+||
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~-~l~~~~~--~~dvVi   72 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVN-----DPE-SLAELLR--GCDVVI   72 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TT-----THH-HHHHHHT--TSSEEE
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecC-----CHH-HHHHHHh--cCCEEE
Confidence            6899999999999999988764 389999999999776543  2221   123332     222 2555544  369999


Q ss_pred             EcCCChHHHHHHHHHhccCCcEEEEE
Q 043260          274 ECTGVASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       274 d~~g~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      +|++......-+-.|+..+ -.++..
T Consensus        73 n~~gp~~~~~v~~~~i~~g-~~yvD~   97 (386)
T PF03435_consen   73 NCAGPFFGEPVARACIEAG-VHYVDT   97 (386)
T ss_dssp             E-SSGGGHHHHHHHHHHHT--EEEES
T ss_pred             ECCccchhHHHHHHHHHhC-CCeecc
Confidence            9999754555566666666 777773

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.09  E-value=0.071  Score=47.36  Aligned_cols=80  Identities=24%  Similarity=0.247  Sum_probs=51.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---HcCCC-eee--CCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-E---AFGMT-DFI--NPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~---~lga~-~v~--~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      +++++||+|+ |.+|..+++.+...|. +|++++++.++.+.. .   +.+.. ..+  |..+  .+++.+.+..... .
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   79 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD--EEAINAGIDYAVETF   79 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4578999998 9999999998888998 899999988765533 2   22332 122  3322  2333333332211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      .++|+||.+++.
T Consensus        80 ~~~d~vi~~a~~   91 (258)
T PRK12429         80 GGVDILVNNAGI   91 (258)
T ss_pred             CCCCEEEECCCC
Confidence            258999998873

>PRK00811 spermidine synthase; Provisional

Probab=96.09  E-value=0.04  Score=50.47  Aligned_cols=96  Identities=15%  Similarity=0.111  Sum_probs=65.0

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-C-----C--C---eeeCCCCCCCchHHHHHHHh
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-G-----M--T---DFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-g-----a--~---~v~~~~~~~~~~~~~~~~~~  263 (332)
                      .+.++||++|+|. |..+..+++..+..+|++++.+++-.+.+++. .     .  +   .++.      .+..+.+.. 
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~------~Da~~~l~~-  146 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI------GDGIKFVAE-  146 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE------CchHHHHhh-
Confidence            4567899999876 66677777766767999999999988887763 1     1  1   1221      223334443 


Q ss_pred             cCCCCccEEEEcCCC----------hHHHHHHHHHhccCCcEEEEEc
Q 043260          264 THGTGVDYGFECTGV----------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       264 ~~~~g~d~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      . ...+|+||-....          .+.+..+.+.|+++ |.++.-.
T Consensus       147 ~-~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g-Gvlv~~~  191 (283)
T PRK00811        147 T-ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED-GIFVAQS  191 (283)
T ss_pred             C-CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEEeC
Confidence            2 3379999975432          23467888999998 9988753

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.031  Score=50.17  Aligned_cols=80  Identities=19%  Similarity=0.230  Sum_probs=52.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-H----cCCCee----eCCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-A----FGMTDF----INPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~----lga~~v----~~~~~~~~~~~~~~~~~~~~  265 (332)
                      .|++++|+|+ +++|...++.+...|+ +|+++++++++.+.+. +    .+...+    .|..+  .++..+.+.+...
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   83 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLD--EADVAAFAAAVEA   83 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC--HHHHHHHHHHHHH
Confidence            4788999998 9999999999999999 8999999887765332 1    111121    23333  2333333333211


Q ss_pred             -CCCccEEEEcCCC
Q 043260          266 -GTGVDYGFECTGV  278 (332)
Q Consensus       266 -~~g~d~vid~~g~  278 (332)
                       -..+|++|+++|.
T Consensus        84 ~~g~id~li~~Ag~   97 (265)
T PRK07062         84 RFGGVDMLVNNAGQ   97 (265)
T ss_pred             hcCCCCEEEECCCC
Confidence             1258999999984

>PRK05717 oxidoreductase; Validated

Probab=96.08  E-value=0.035  Score=49.55  Aligned_cols=80  Identities=21%  Similarity=0.295  Sum_probs=51.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCe-e--eCCCCCCCchHHHHHHHhcCC-CCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTD-F--INPDDEPNKSISELVKEMTHG-TGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~-v--~~~~~~~~~~~~~~~~~~~~~-~g~  269 (332)
                      .|++++|+|+ |.+|..++..+...|+ +|++++++.++.+. .++++... .  .|..+  .++..+.+.+.... ..+
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVAD--EAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            4788999998 9999999999988998 89999887665543 34455321 1  23322  23333333332211 158


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|.+.|.
T Consensus        86 d~li~~ag~   94 (255)
T PRK05717         86 DALVCNAAI   94 (255)
T ss_pred             CEEEECCCc
Confidence            999998874

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.07  E-value=0.023  Score=49.26  Aligned_cols=35  Identities=31%  Similarity=0.465  Sum_probs=31.5

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ...+|+|+|+|++|..+++.+...|..+++++|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            34679999999999999999999999889999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=96.04  E-value=0.057  Score=48.02  Aligned_cols=106  Identities=22%  Similarity=0.213  Sum_probs=77.6

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      ...++.+|++|+=.|.|. |.+++-|++..|. .+|+..+..++..+.|++    +|....+....   .    .+.+..
T Consensus        88 ~~~gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~---~----Dv~~~~  159 (256)
T COG2519          88 ARLGISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL---G----DVREGI  159 (256)
T ss_pred             HHcCCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe---c----cccccc
Confidence            467899999999888876 8888899988874 799999999988876643    45443222221   2    233333


Q ss_pred             CCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          265 HGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       265 ~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .+..+|.||--...+ ..++.+.+.|+++ |.++++-..-+
T Consensus       160 ~~~~vDav~LDmp~PW~~le~~~~~Lkpg-g~~~~y~P~ve  199 (256)
T COG2519         160 DEEDVDAVFLDLPDPWNVLEHVSDALKPG-GVVVVYSPTVE  199 (256)
T ss_pred             cccccCEEEEcCCChHHHHHHHHHHhCCC-cEEEEEcCCHH
Confidence            344799888766665 5788999999998 99999986554

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.04  E-value=0.037  Score=49.29  Aligned_cols=80  Identities=20%  Similarity=0.258  Sum_probs=52.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHHhcCC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKEMTHG-  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~~~~~-  266 (332)
                      ++++++|+|+ |++|..++..+...|+ +|+++++++++.+.+    ++.+.+. .+  |..+  .++..+.+.+.... 
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRD--EAYAKALVALAVERF   81 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence            4678999998 9999999999999999 899999988776533    2234332 22  2222  23333333322111 


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ..+|++|.++|.
T Consensus        82 ~~id~li~~ag~   93 (254)
T PRK07478         82 GGLDIAFNNAGT   93 (254)
T ss_pred             CCCCEEEECCCC
Confidence            258999999874

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.04  E-value=0.028  Score=50.26  Aligned_cols=105  Identities=15%  Similarity=0.183  Sum_probs=64.6

Q ss_pred             CCCEEEEECCC---hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC--eee--CCCCCCCchHHHHHHHhcCC-C
Q 043260          196 KGSSVAVFGLG---AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT--DFI--NPDDEPNKSISELVKEMTHG-T  267 (332)
Q Consensus       196 ~g~~vlV~G~g---~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~--~v~--~~~~~~~~~~~~~~~~~~~~-~  267 (332)
                      .|++++|+|++   ++|.++++.+...|+ +|++++++++..+.++++...  ..+  |..+  .++..+.+.+.... .
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~g   82 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVAS--DESIERAFATIKERVG   82 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCC--HHHHHHHHHHHHHHhC
Confidence            57889999874   899999999999999 899988875434444444222  122  2222  23343333332211 1


Q ss_pred             CccEEEEcCCChH-----------------------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          268 GVDYGFECTGVAS-----------------------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       268 g~d~vid~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .+|++|+++|...                             ..+.++..+.++ |+++.+++...
T Consensus        83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~-g~Iv~iss~~~  147 (252)
T PRK06079         83 KIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPG-ASIVTLTYFGS  147 (252)
T ss_pred             CCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccC-ceEEEEeccCc
Confidence            5899999887310                             123344556666 88888876554

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.034  Score=49.47  Aligned_cols=73  Identities=15%  Similarity=0.123  Sum_probs=49.2

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCC-ee--eCCCCCCCchHHHHHHHhcCCCC
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMT-DF--INPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~-~v--~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ++++||+|+ |.+|..+++.+...|+ +|+++.+++++.+.+.    ..+.. .+  .|..+   .   +.+.+...+ +
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~---~~~~~~~~~-~   73 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD---A---IDRAQAAEW-D   73 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC---H---HHHHHHhcC-C
Confidence            468999998 9999999999999998 8999988876654432    23332 12  23322   1   123332222 7


Q ss_pred             ccEEEEcCC
Q 043260          269 VDYGFECTG  277 (332)
Q Consensus       269 ~d~vid~~g  277 (332)
                      +|+||++.|
T Consensus        74 id~vi~~ag   82 (257)
T PRK09291         74 VDVLLNNAG   82 (257)
T ss_pred             CCEEEECCC
Confidence            999999987

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.02  E-value=0.1  Score=46.39  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=51.4

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCCe-e--eCCCCCCCchHHHHHHHhcC-CCCccE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMTD-F--INPDDEPNKSISELVKEMTH-GTGVDY  271 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~~-v--~~~~~~~~~~~~~~~~~~~~-~~g~d~  271 (332)
                      ++++|+|+ |++|...+..+...|+ +|+++++++++.+.+.+ ++.+. .  .|..+  .+++.+.+.+... ..+.|.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~~~id~   77 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN--RAAIEEMLASLPAEWRNIDV   77 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            36899998 9999999999999999 89999998877665433 44332 1  23322  2333333333211 125899


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      +|.++|.
T Consensus        78 vi~~ag~   84 (248)
T PRK10538         78 LVNNAGL   84 (248)
T ss_pred             EEECCCc
Confidence            9998874

>PLN02366 spermidine synthase

Probab=96.02  E-value=0.057  Score=50.07  Aligned_cols=100  Identities=18%  Similarity=0.093  Sum_probs=65.1

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-CC------CeeeCCCCCCCchHHHHHHHhcCCC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-GM------TDFINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-ga------~~v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      .+.++||++|+|. |..+..+++.-+..+|.+++.+++-.+.+++. ..      +.-+...   ..+..+.+++.. +.
T Consensus        90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi---~~Da~~~l~~~~-~~  164 (308)
T PLN02366         90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLH---IGDGVEFLKNAP-EG  164 (308)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEE---EChHHHHHhhcc-CC
Confidence            5578999999876 55666777776666899999998877777663 11      1001111   123333444332 33


Q ss_pred             CccEEEEcCCC----------hHHHHHHHHHhccCCcEEEEEc
Q 043260          268 GVDYGFECTGV----------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       268 g~d~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      .+|+||--...          .+.+..+.+.|+++ |.++.-.
T Consensus       165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg-Gvlv~q~  206 (308)
T PLN02366        165 TYDAIIVDSSDPVGPAQELFEKPFFESVARALRPG-GVVCTQA  206 (308)
T ss_pred             CCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEECc
Confidence            69999975443          23578899999998 9987543

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=96.01  E-value=0.1  Score=46.82  Aligned_cols=96  Identities=18%  Similarity=0.166  Sum_probs=68.2

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ......++++||=+|+|. |..+..+++.. +. +|+++|.++.-.+.+++.+.+.+. .      +.    .++.....
T Consensus        23 ~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~~~~-~------d~----~~~~~~~~   89 (255)
T PRK14103         23 ARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVDART-G------DV----RDWKPKPD   89 (255)
T ss_pred             HhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCcEEE-c------Ch----hhCCCCCC
Confidence            455667889999999976 77777888775 45 899999999888888776544322 1      11    12222337


Q ss_pred             ccEEEEcCC-----C-hHHHHHHHHHhccCCcEEEEE
Q 043260          269 VDYGFECTG-----V-ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       269 ~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      ||+|+....     . ...+..+.+.|+|+ |.+++.
T Consensus        90 fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~  125 (255)
T PRK14103         90 TDVVVSNAALQWVPEHADLLVRWVDELAPG-SWIAVQ  125 (255)
T ss_pred             ceEEEEehhhhhCCCHHHHHHHHHHhCCCC-cEEEEE
Confidence            999998553     2 24577889999998 998875

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.01  E-value=0.073  Score=47.11  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=31.2

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ..+|+|+|+|++|..++..+..+|..+++++|.+.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            57899999999999999999999999999997543

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.00  E-value=0.014  Score=44.90  Aligned_cols=89  Identities=24%  Similarity=0.268  Sum_probs=58.5

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .|.+|||+|+|.+|..-++.+...|+ +|+++....   +..+  +.-... .     ..+    .+.  -.++|+||-+
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~--~~i~~~-~-----~~~----~~~--l~~~~lV~~a   67 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSE--GLIQLI-R-----REF----EED--LDGADLVFAA   67 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHH--TSCEEE-E-----SS-----GGG--CTTESEEEE-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhh--hHHHHH-h-----hhH----HHH--HhhheEEEec
Confidence            57899999999999999999999998 999998775   2222  211111 1     222    111  2369999999


Q ss_pred             CCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          276 TGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       276 ~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ++++..-....+..+.. +.++.+....
T Consensus        68 t~d~~~n~~i~~~a~~~-~i~vn~~D~p   94 (103)
T PF13241_consen   68 TDDPELNEAIYADARAR-GILVNVVDDP   94 (103)
T ss_dssp             SS-HHHHHHHHHHHHHT-TSEEEETT-C
T ss_pred             CCCHHHHHHHHHHHhhC-CEEEEECCCc
Confidence            99975555666666666 8888776544

>PRK06153 hypothetical protein; Provisional

Probab=96.00  E-value=0.026  Score=53.48  Aligned_cols=35  Identities=26%  Similarity=0.427  Sum_probs=31.7

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      .+.+|+|+|+|++|-.++..+.+.|.++++++|.+
T Consensus       175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            45789999999999999999999999999999865

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=95.99  E-value=0.046  Score=48.96  Aligned_cols=79  Identities=22%  Similarity=0.256  Sum_probs=50.1

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH---cCCCeeeCCCCCCCchHHHHHHHhcC-CCCccEE
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA---FGMTDFINPDDEPNKSISELVKEMTH-GTGVDYG  272 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~---lga~~v~~~~~~~~~~~~~~~~~~~~-~~g~d~v  272 (332)
                      ++||+|+ +++|.++++.+...|+ +|+++++++++.+.+ .+   .+....+..+-.+.++..+.+.+... -.++|++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l   80 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL   80 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            6899998 9999999999999999 899999988765433 22   23222222221112333333333211 1258999


Q ss_pred             EEcCCC
Q 043260          273 FECTGV  278 (332)
Q Consensus       273 id~~g~  278 (332)
                      |++.|.
T Consensus        81 i~naG~   86 (259)
T PRK08340         81 VWNAGN   86 (259)
T ss_pred             EECCCC
Confidence            999874

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.98  E-value=0.032  Score=45.02  Aligned_cols=99  Identities=17%  Similarity=0.206  Sum_probs=59.1

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc-------------------hHH----HHHHcCC-CeeeCCCCCC
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC-------------------RKD----KGEAFGM-TDFINPDDEP  252 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~-------------------~~~----~~~~lga-~~v~~~~~~~  252 (332)
                      ..+|+|+|+|++|..++..+...|.++++++|.+.-                   |.+    .++++.. -++....   
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~---   78 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP---   78 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE---
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee---
Confidence            468999999999999999999999999999986432                   111    1222221 1222111   


Q ss_pred             CchH-HHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcC
Q 043260          253 NKSI-SELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       253 ~~~~-~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                       ..+ .+...++.  .++|+||+|+.+......+.+.+...+-.++..+.
T Consensus        79 -~~~~~~~~~~~~--~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~  125 (135)
T PF00899_consen   79 -EKIDEENIEELL--KDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGV  125 (135)
T ss_dssp             -SHCSHHHHHHHH--HTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred             -cccccccccccc--cCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence             111 12223333  26899999999865555666666665134444443

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.97  E-value=0.061  Score=51.37  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=32.2

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ...+|+|+|+|++|..++..+...|.++++++|.+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            56789999999999999999999999999999987

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.96  E-value=0.034  Score=47.12  Aligned_cols=33  Identities=18%  Similarity=0.269  Sum_probs=29.9

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      +|+|+|+|++|...++.+...|..+++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            489999999999999999999998899999765

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07985 oxidoreductase; Provisional

Probab=95.96  E-value=0.1  Score=47.96  Aligned_cols=105  Identities=19%  Similarity=0.156  Sum_probs=63.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc--chHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP--CRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~--~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~~~~  265 (332)
                      +++++||+|+ |++|.++++.+...|+ +|+++.++.  ++.+.+    ++.|... .+  |..+  .++..+.+.+...
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~  124 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD--EKFARSLVHEAHK  124 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence            5678999998 9999999999999999 888876543  222222    2334322 22  3322  2333333333221


Q ss_pred             -CCCccEEEEcCCCh--------------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          266 -GTGVDYGFECTGVA--------------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       266 -~~g~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                       -.+.|+++.+.|..                          ..++.++..+.++ |+++.+++...
T Consensus       125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~iv~iSS~~~  189 (294)
T PRK07985        125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKG-ASIITTSSIQA  189 (294)
T ss_pred             HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcC-CEEEEECCchh
Confidence             12589999987731                          1123444455666 89999887544

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.96  E-value=0.045  Score=48.10  Aligned_cols=80  Identities=20%  Similarity=0.290  Sum_probs=52.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHHcCCCee---eCCCCCCCchHHHHHHHhcCC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK----GEAFGMTDF---INPDDEPNKSISELVKEMTHG-  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~----~~~lga~~v---~~~~~~~~~~~~~~~~~~~~~-  266 (332)
                      +++++||+|+ |.+|..+++.+...|. +|+++++++++.+.    +++.+....   .|..+  ..++.+.+.+.... 
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD--EAAVRALIEAAVEAF   80 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            3578999998 9999999999988999 79999998876543    233444322   23332  23343333332111 


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ..+|.||.++|.
T Consensus        81 ~~id~vi~~ag~   92 (246)
T PRK05653         81 GALDILVNNAGI   92 (246)
T ss_pred             CCCCEEEECCCc
Confidence            258999998864

>PRK06194 hypothetical protein; Provisional

Probab=95.94  E-value=0.028  Score=51.07  Aligned_cols=82  Identities=18%  Similarity=0.221  Sum_probs=51.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc---CCCe-eeCCCCCCCchHHHHHHHhcC-CCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF---GMTD-FINPDDEPNKSISELVKEMTH-GTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l---ga~~-v~~~~~~~~~~~~~~~~~~~~-~~g  268 (332)
                      +++++||+|+ |++|..+++.+...|+ +|++++++.++++.. .++   +... ++..+-.+.+++.+.+..... -.+
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   83 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA   83 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            3678999998 9999999999988999 899999887665433 222   3321 122211112333333322111 125


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|+||+++|.
T Consensus        84 id~vi~~Ag~   93 (287)
T PRK06194         84 VHLLFNNAGV   93 (287)
T ss_pred             CCEEEECCCC
Confidence            8999999885

>PRK12747 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.11  Score=46.17  Aligned_cols=105  Identities=20%  Similarity=0.271  Sum_probs=62.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHH-HH---HHcCCCee-e--CCCCCCCchHHH---HHHHh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGID-KNPCRKD-KG---EAFGMTDF-I--NPDDEPNKSISE---LVKEM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~-~~~~~~~-~~---~~lga~~v-~--~~~~~~~~~~~~---~~~~~  263 (332)
                      .++++||+|+ |++|.++++.+...|+ +|++.. ++.++.+ ..   ++.+.+.. +  |..+  .++...   .+.+.
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   79 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLES--LHGVEALYSSLDNE   79 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCC--HHHHHHHHHHHHHH
Confidence            4688999998 9999999999999998 787764 4444433 22   22233211 1  2221  122222   22221


Q ss_pred             ----cCCCCccEEEEcCCCh----------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          264 ----THGTGVDYGFECTGVA----------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       264 ----~~~~g~d~vid~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                          .+..++|++++++|..          +               .++.++..+.+. |+++.+++...
T Consensus        80 ~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~-g~iv~isS~~~  148 (252)
T PRK12747         80 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN-SRIINISSAAT  148 (252)
T ss_pred             hhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcC-CeEEEECCccc
Confidence                1213689999998731          0               122355566676 89999987654

>PRK08223 hypothetical protein; Validated

Probab=95.93  E-value=0.042  Score=50.21  Aligned_cols=36  Identities=31%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ...+|+|+|+|++|..+++.+..+|.+++.++|.+.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            456799999999999999999999999999998654

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=95.93  E-value=0.033  Score=50.66  Aligned_cols=82  Identities=20%  Similarity=0.226  Sum_probs=53.8

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCC------eeeCCCCC-CCchHHHHHHH
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMT------DFINPDDE-PNKSISELVKE  262 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~------~v~~~~~~-~~~~~~~~~~~  262 (332)
                      -.|++++|+|+ .++|.+.+..+...|+ +|+++++++++.+..+    ..+..      .+.|..+. ..++..+...+
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~   84 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE   84 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence            46788999988 9999999999999999 9999999998865432    22322      12233320 11222222223


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      ...+ ..|+++++.|.
T Consensus        85 ~~~G-kidiLvnnag~   99 (270)
T KOG0725|consen   85 KFFG-KIDILVNNAGA   99 (270)
T ss_pred             HhCC-CCCEEEEcCCc
Confidence            3233 68999998885

>PRK07574 formate dehydrogenase; Provisional

Probab=95.92  E-value=0.076  Score=50.76  Aligned_cols=39  Identities=26%  Similarity=0.480  Sum_probs=33.9

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD  235 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~  235 (332)
                      .|++|.|+|.|.+|..+++.++.+|. +|++.+++....+
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~  229 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEE  229 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchh
Confidence            56899999999999999999999999 9999998763333

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=95.91  E-value=0.1  Score=47.70  Aligned_cols=89  Identities=20%  Similarity=0.228  Sum_probs=66.6

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR-KDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~-~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      +|.++|.|.+|.-.++=+...|. .+.+.++++++ .+++++.|+...-        +..+.+.      ..|+||-++.
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~~~Ga~~a~--------s~~eaa~------~aDvVitmv~   66 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLAAAGATVAA--------SPAEAAA------EADVVITMLP   66 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHHHcCCcccC--------CHHHHHH------hCCEEEEecC
Confidence            68889999999999999999999 99999999999 8888888875442        2222221      4789998888


Q ss_pred             ChHHHHHHH-------HHhccCCcEEEEEcCCC
Q 043260          278 VASLISEAL-------EATKLGKGKVMAIGAAN  303 (332)
Q Consensus       278 ~~~~~~~~~-------~~l~~~~G~~v~~G~~~  303 (332)
                      +.+.+.+.+       +.++++ ..+|.+....
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G-~i~IDmSTis   98 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPG-AIVIDMSTIS   98 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCC-CEEEECCCCC
Confidence            876655544       344466 7777777654

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.91  E-value=0.049  Score=48.70  Aligned_cols=80  Identities=21%  Similarity=0.304  Sum_probs=52.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCC-eee--CCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMT-DFI--NPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~-~v~--~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      +++++||+|+ |.+|..+++.+...|+ +|++++++.++++.+.    +.+.. ..+  |..+  .+++.+.+.+... -
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d--~~~i~~~~~~~~~~~   87 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVAD--EADIERLAEETLERF   87 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            5789999998 9999999999988999 8999999887765432    22322 122  3332  3344333333211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      .++|.||.++|.
T Consensus        88 ~~id~vi~~ag~   99 (259)
T PRK08213         88 GHVDILVNNAGA   99 (259)
T ss_pred             CCCCEEEECCCC
Confidence            258999999874

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.90  E-value=0.057  Score=50.81  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=32.0

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ...+|+|+|+|++|..+++.+...|..++.++|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            346799999999999999999999999999999863

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.90  E-value=0.068  Score=48.91  Aligned_cols=78  Identities=22%  Similarity=0.198  Sum_probs=57.5

Q ss_pred             CCCCCEEEEECCCh-HHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          194 VEKGSSVAVFGLGA-VGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       194 ~~~g~~vlV~G~g~-vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      --.|++++|+|.|. +|...+.++...|+ +|+++.+..                      .++.+.+      +.+|+|
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t----------------------~~L~~~~------~~aDIv  206 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRT----------------------QNLPELV------KQADII  206 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCc----------------------hhHHHHh------ccCCEE
Confidence            35789999999976 99999999999999 898886521                      1121112      268999


Q ss_pred             EEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          273 FECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       273 id~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      |.++|.+..+.  .+.++++ ..++.+|...
T Consensus       207 I~AtG~~~~v~--~~~lk~g-avViDvg~n~  234 (283)
T PRK14192        207 VGAVGKPELIK--KDWIKQG-AVVVDAGFHP  234 (283)
T ss_pred             EEccCCCCcCC--HHHcCCC-CEEEEEEEee
Confidence            99998765433  3568887 8888888554

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.89  E-value=0.057  Score=48.74  Aligned_cols=81  Identities=20%  Similarity=0.247  Sum_probs=49.4

Q ss_pred             CCCEEEEECC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhcCC-C
Q 043260          196 KGSSVAVFGL-G--AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMTHG-T  267 (332)
Q Consensus       196 ~g~~vlV~G~-g--~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~~~-~  267 (332)
                      .|+++||+|+ +  ++|.++++.+...|+ +|++++++++..+.+++    .+....+..+-.+.+++.+.+.+.... .
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   83 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWP   83 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence            5788999998 3  799999999988999 89888876421222322    232222222221234444444433221 1


Q ss_pred             CccEEEEcCC
Q 043260          268 GVDYGFECTG  277 (332)
Q Consensus       268 g~d~vid~~g  277 (332)
                      .+|++|+++|
T Consensus        84 ~iD~linnAg   93 (262)
T PRK07984         84 KFDGFVHSIG   93 (262)
T ss_pred             CCCEEEECCc
Confidence            5899999997

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.89  E-value=0.048  Score=49.03  Aligned_cols=82  Identities=15%  Similarity=0.240  Sum_probs=49.6

Q ss_pred             CCCEEEEECC---ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhcCC-C
Q 043260          196 KGSSVAVFGL---GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMTHG-T  267 (332)
Q Consensus       196 ~g~~vlV~G~---g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~~~-~  267 (332)
                      +++++||+|+   +++|.+.++.+...|+ +|+++.++++..+.+++    .|....+..+-.+.++..+.+.+.... .
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD   83 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence            5788999984   5899999999989999 89887665433333322    343222222211234444444332211 2


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus        84 ~iD~lVnnAG~   94 (261)
T PRK08690         84 GLDGLVHSIGF   94 (261)
T ss_pred             CCcEEEECCcc
Confidence            58999999874

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.052  Score=47.61  Aligned_cols=74  Identities=15%  Similarity=0.141  Sum_probs=50.5

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCee-eCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDF-INPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v-~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      +++|+|+ |++|...++.+...|+ +|+++++++++.+.+ ++++...+ .|..+  .+++.+.+.+.. + .+|+++++
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~-~-~id~lv~~   76 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAIVCDNTD--PASLEEARGLFP-H-HLDTIVNV   76 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEEecCCCC--HHHHHHHHHHHh-h-cCcEEEEC
Confidence            5899988 9999999999988998 999999988776543 44554322 23332  233433333332 2 58999998


Q ss_pred             CC
Q 043260          276 TG  277 (332)
Q Consensus       276 ~g  277 (332)
                      .|
T Consensus        77 ag   78 (223)
T PRK05884         77 PA   78 (223)
T ss_pred             CC
Confidence            65

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.045  Score=48.95  Aligned_cols=80  Identities=18%  Similarity=0.221  Sum_probs=51.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc-----CCC-eee--CCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF-----GMT-DFI--NPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l-----ga~-~v~--~~~~~~~~~~~~~~~~~~~  265 (332)
                      .+++++|+|+ |++|..+++.+...|+ +|+++++++++.+.. +++     +.. .++  |..+  .+++.+.+.+...
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   82 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTD--AASVAAAVAAAEE   82 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4688999998 9999999999999999 899999987766533 222     222 122  3322  2333333332211


Q ss_pred             -CCCccEEEEcCCC
Q 043260          266 -GTGVDYGFECTGV  278 (332)
Q Consensus       266 -~~g~d~vid~~g~  278 (332)
                       -..+|++|++.|.
T Consensus        83 ~~g~id~li~~ag~   96 (260)
T PRK07063         83 AFGPLDVLVNNAGI   96 (260)
T ss_pred             HhCCCcEEEECCCc
Confidence             1258999999884

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=95.87  E-value=0.14  Score=44.50  Aligned_cols=99  Identities=15%  Similarity=0.188  Sum_probs=63.6

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCe--eeCCCCCCCchHHHHHHH
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTD--FINPDDEPNKSISELVKE  262 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~~~~  262 (332)
                      ....+++++++||-+|+|. |..+..+++.. . +|+.++.+++..+.+++    .+.+.  ++..+.      .+   .
T Consensus        71 ~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~------~~---~  138 (212)
T PRK00312         71 TELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG------WK---G  138 (212)
T ss_pred             HHhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc------cc---C
Confidence            3566788999999999865 55555555553 3 89999999877665533    44432  221111      00   1


Q ss_pred             hcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEc
Q 043260          263 MTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      +.....||+|+.............+.|+++ |++++.-
T Consensus       139 ~~~~~~fD~I~~~~~~~~~~~~l~~~L~~g-G~lv~~~  175 (212)
T PRK00312        139 WPAYAPFDRILVTAAAPEIPRALLEQLKEG-GILVAPV  175 (212)
T ss_pred             CCcCCCcCEEEEccCchhhhHHHHHhcCCC-cEEEEEE
Confidence            111236999998766555667888999998 9877543

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.052  Score=48.35  Aligned_cols=80  Identities=23%  Similarity=0.184  Sum_probs=51.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-H---cCCC-ee--eCCCCCCCchHHHHHHHhcCC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-A---FGMT-DF--INPDDEPNKSISELVKEMTHG-  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~---lga~-~v--~~~~~~~~~~~~~~~~~~~~~-  266 (332)
                      .+++++|+|+ |++|..++..+...|+ +|+++++++++.+.+. +   .+.. ..  .|..+  .+++...+.+.... 
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD--EDQCANLVALALERF   80 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC--HHHHHHHHHHHHHHc
Confidence            5688999998 9999999999999999 9999999887654332 2   2332 11  23322  23333333322111 


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ..+|++|.+.|.
T Consensus        81 g~~d~vi~~ag~   92 (258)
T PRK07890         81 GRVDALVNNAFR   92 (258)
T ss_pred             CCccEEEECCcc
Confidence            258999998874

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.86  E-value=0.054  Score=50.25  Aligned_cols=80  Identities=21%  Similarity=0.351  Sum_probs=51.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc----C-CC-ee--eCCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF----G-MT-DF--INPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l----g-a~-~v--~~~~~~~~~~~~~~~~~~~~  265 (332)
                      .|++++|+|+ +++|.++++.+...|+ +|+++.++.++.+.+ +++    + .. .+  .|..+  .++..+.+.+...
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d--~~sv~~~~~~~~~   89 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSS--LASVAALGEQLRA   89 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCC--HHHHHHHHHHHHH
Confidence            4688999998 9999999999988998 999999988765432 222    1 11 12  23332  2333333333211


Q ss_pred             -CCCccEEEEcCCC
Q 043260          266 -GTGVDYGFECTGV  278 (332)
Q Consensus       266 -~~g~d~vid~~g~  278 (332)
                       ....|++|+++|.
T Consensus        90 ~~~~iD~li~nAG~  103 (313)
T PRK05854         90 EGRPIHLLINNAGV  103 (313)
T ss_pred             hCCCccEEEECCcc
Confidence             1258999998874

>PLN03139 formate dehydrogenase; Provisional

Probab=95.86  E-value=0.082  Score=50.55  Aligned_cols=45  Identities=18%  Similarity=0.319  Sum_probs=36.6

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG  241 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg  241 (332)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++..+.+..++.|
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g  242 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETG  242 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcC
Confidence            57899999999999999999999999 8999988754444344444

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.85  E-value=0.033  Score=50.64  Aligned_cols=81  Identities=21%  Similarity=0.179  Sum_probs=53.9

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH----HHHHHcC-C-CeeeCCCC-CCCchHHHHHHHhcCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK----DKGEAFG-M-TDFINPDD-EPNKSISELVKEMTHG  266 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~----~~~~~lg-a-~~v~~~~~-~~~~~~~~~~~~~~~~  266 (332)
                      -.|+.|||+|+ +++|.+.++-...+|+ +++++|.+.+-.    +..++.| + .++.|-.+ ++-....+.+++..+ 
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G-  113 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG-  113 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcC-
Confidence            36899999988 8999998888888998 899999887543    2344445 1 23334333 012223344444443 


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                       .+|++++++|-
T Consensus       114 -~V~ILVNNAGI  124 (300)
T KOG1201|consen  114 -DVDILVNNAGI  124 (300)
T ss_pred             -CceEEEecccc
Confidence             58999999884

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.85  E-value=0.059  Score=46.60  Aligned_cols=101  Identities=16%  Similarity=0.176  Sum_probs=59.9

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch-------------------H----HHHHHcCCCeeeCCCCCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR-------------------K----DKGEAFGMTDFINPDDEP  252 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~-------------------~----~~~~~lga~~v~~~~~~~  252 (332)
                      ...+|+|+|+|++|.-++..+...|.+++.++|.+.-.                   .    +.++++..+..+....  
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~--   97 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT--   97 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe--
Confidence            45679999999999999999999999999999865321                   1    1234444443222211  


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcC
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                       ..+.+...+..  .++|+|+++..+.......-+.....+-.++..+.
T Consensus        98 -~~~~~~~~~~~--~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~  143 (197)
T cd01492          98 -DDISEKPEEFF--SQFDVVVATELSRAELVKINELCRKLGVKFYATGV  143 (197)
T ss_pred             -cCccccHHHHH--hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence             11111112222  26899999988765544444555544134444443

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.84  E-value=0.05  Score=50.51  Aligned_cols=79  Identities=19%  Similarity=0.246  Sum_probs=51.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcC---CC-ee--eCCCCCCCchHHHHHHHhc-CC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFG---MT-DF--INPDDEPNKSISELVKEMT-HG  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lg---a~-~v--~~~~~~~~~~~~~~~~~~~-~~  266 (332)
                      .+++++|+|+ |++|..+++.+...|. +|++++++.++.+.+ +++.   .. .+  .|..+  .++..+.+.+.. ..
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   81 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGD--LDSVRRFVDDFRALG   81 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCC--HHHHHHHHHHHHHhC
Confidence            4678999998 9999999999888998 999999888776533 3332   11 12  23322  233333333321 12


Q ss_pred             CCccEEEEcCC
Q 043260          267 TGVDYGFECTG  277 (332)
Q Consensus       267 ~g~d~vid~~g  277 (332)
                      ..+|++|+++|
T Consensus        82 ~~iD~li~nAg   92 (322)
T PRK07453         82 KPLDALVCNAA   92 (322)
T ss_pred             CCccEEEECCc
Confidence            25899999987

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.076  Score=47.49  Aligned_cols=77  Identities=14%  Similarity=0.259  Sum_probs=51.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-Hc----CCC-eee--CCCCCCCchHHHHHHHhcCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AF----GMT-DFI--NPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~l----ga~-~v~--~~~~~~~~~~~~~~~~~~~~  266 (332)
                      .++++||+|+ +++|..+++.+...|+ +|++++++.++.+.+. ++    +.. ..+  |..+  .+++.+.+.+ . +
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~-~-g   80 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS--PEAREQLAAE-A-G   80 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC--HHHHHHHHHH-h-C
Confidence            4789999998 9999999999999999 9999999887665432 12    322 222  2222  2333333332 2 2


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                       .+|++|.+.|.
T Consensus        81 -~id~lv~~ag~   91 (259)
T PRK06125         81 -DIDILVNNAGA   91 (259)
T ss_pred             -CCCEEEECCCC
Confidence             68999999874

>PRK12367 short chain dehydrogenase; Provisional

Probab=95.81  E-value=0.061  Score=48.08  Aligned_cols=73  Identities=21%  Similarity=0.395  Sum_probs=47.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHHcCCCeee--CCCCCCCchHHHHHHHhcCCCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPC-RKDKGEAFGMTDFI--NPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~-~~~~~~~lga~~v~--~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      .+++++|+|+ |++|..+++.+...|+ +|++++++.. +.+... .+....+  |..+   .   +.+.+..+  +.|+
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~---~---~~~~~~~~--~iDi   82 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSESND-ESPNEWIKWECGK---E---ESLDKQLA--SLDV   82 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhhhc-cCCCeEEEeeCCC---H---HHHHHhcC--CCCE
Confidence            4688999998 9999999999999999 9999888762 222211 1212222  2222   1   12333332  5999


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      +|+++|.
T Consensus        83 lVnnAG~   89 (245)
T PRK12367         83 LILNHGI   89 (245)
T ss_pred             EEECCcc
Confidence            9999875

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.81  E-value=0.13  Score=43.06  Aligned_cols=85  Identities=22%  Similarity=0.324  Sum_probs=60.7

Q ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHHcCCCeeeCCCCC-CCchHHHHHHHhcCCC-Cc
Q 043260          194 VEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR-KDKGEAFGMTDFINPDDE-PNKSISELVKEMTHGT-GV  269 (332)
Q Consensus       194 ~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~-~~~~~~lga~~v~~~~~~-~~~~~~~~~~~~~~~~-g~  269 (332)
                      ..+|-..||.|. +++|.+++..+...|+ .++..|....+ .+.++++|...++.+.+. ++.+...++...-+.. ..
T Consensus         6 s~kglvalvtggasglg~ataerlakqga-sv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrl   84 (260)
T KOG1199|consen    6 STKGLVALVTGGASGLGKATAERLAKQGA-SVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRL   84 (260)
T ss_pred             hhcCeeEEeecCcccccHHHHHHHHhcCc-eEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccce
Confidence            356777788865 9999999999999999 89998877655 568899998877766553 2344444443322221 37


Q ss_pred             cEEEEcCCCh
Q 043260          270 DYGFECTGVA  279 (332)
Q Consensus       270 d~vid~~g~~  279 (332)
                      |+.++|.|..
T Consensus        85 d~~vncagia   94 (260)
T KOG1199|consen   85 DALVNCAGIA   94 (260)
T ss_pred             eeeeecccee
Confidence            9999999873

>TIGR00477 tehB tellurite resistance protein TehB

Probab=95.81  E-value=0.043  Score=47.31  Aligned_cols=97  Identities=16%  Similarity=0.234  Sum_probs=59.6

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhcC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      +.....++.+||-+|+|. |..+..+++ .|. +|+++|.+++-.+.+++    .+..  +....   .+... . .. .
T Consensus        24 ~~~~~~~~~~vLDiGcG~-G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~---~d~~~-~-~~-~   92 (195)
T TIGR00477        24 EAVKTVAPCKTLDLGCGQ-GRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENLP--LRTDA---YDINA-A-AL-N   92 (195)
T ss_pred             HHhccCCCCcEEEeCCCC-CHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEe---ccchh-c-cc-c
Confidence            444555667899999866 667777766 577 99999999877665543    2322  11110   11100 0 11 2


Q ss_pred             CCCccEEEEcCC-----C---hHHHHHHHHHhccCCcEEEEE
Q 043260          266 GTGVDYGFECTG-----V---ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       266 ~~g~d~vid~~g-----~---~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      + .+|+|+.+..     .   ...+..+.+.|+++ |.++.+
T Consensus        93 ~-~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lli~  132 (195)
T TIGR00477        93 E-DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG-GYNLIV  132 (195)
T ss_pred             C-CCCEEEEecccccCCHHHHHHHHHHHHHHhCCC-cEEEEE
Confidence            2 6999987532     1   24677888999998 985554

Part of a tellurite-reducing operon tehA and tehB

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.79  E-value=0.069  Score=49.06  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=31.9

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      .++++||+|+|+.+.+++..+...|+++|+++.|+++
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            5678999999988998877777889889999999854

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=95.79  E-value=0.032  Score=46.09  Aligned_cols=82  Identities=21%  Similarity=0.229  Sum_probs=50.9

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC--cchHH-H---HHHcCCC-eeeCCCCCCCchHHHHHHHhc-CCCC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN--PCRKD-K---GEAFGMT-DFINPDDEPNKSISELVKEMT-HGTG  268 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~--~~~~~-~---~~~lga~-~v~~~~~~~~~~~~~~~~~~~-~~~g  268 (332)
                      +++||+|+ +++|...++.+...|...|+++.++  .++.+ +   ++..+.. .++..+-.+.++..+.+.+.. ....
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            47899998 9999999988888877688889888  34333 2   2334532 222221112344444444432 1225


Q ss_pred             ccEEEEcCCCh
Q 043260          269 VDYGFECTGVA  279 (332)
Q Consensus       269 ~d~vid~~g~~  279 (332)
                      .|++|.+.|..
T Consensus        81 ld~li~~ag~~   91 (167)
T PF00106_consen   81 LDILINNAGIF   91 (167)
T ss_dssp             ESEEEEECSCT
T ss_pred             ccccccccccc
Confidence            89999998863

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=95.78  E-value=0.15  Score=48.98  Aligned_cols=107  Identities=18%  Similarity=0.222  Sum_probs=64.1

Q ss_pred             hCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH-------HHHHc-CCCee-eCCCCCCCchHHHHHH
Q 043260          192 FKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKD-------KGEAF-GMTDF-INPDDEPNKSISELVK  261 (332)
Q Consensus       192 ~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-------~~~~l-ga~~v-~~~~~~~~~~~~~~~~  261 (332)
                      .....+.+|||+|+ |.+|..+++.+...|. +|++++++..+.+       ..... +...+ .|..+  .+++.+.+.
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~  131 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTD--ADSLRKVLF  131 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCC--HHHHHHHHH
Confidence            34567789999998 9999999999988998 8999988765421       11122 22222 23332  233333333


Q ss_pred             HhcCCCCccEEEEcCCCh------------HHHHHHHHHhccCC-cEEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGVA------------SLISEALEATKLGK-GKVMAIGAAN  303 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~~------------~~~~~~~~~l~~~~-G~~v~~G~~~  303 (332)
                      +.  +.++|+||+|.+..            .....+++.+...+ +++|.++...
T Consensus       132 ~~--~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~  184 (390)
T PLN02657        132 SE--GDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAIC  184 (390)
T ss_pred             Hh--CCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeecc
Confidence            22  11699999988642            01223445444431 4688887654

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.78  E-value=0.055  Score=48.30  Aligned_cols=80  Identities=21%  Similarity=0.314  Sum_probs=51.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHHcCCCe-e--eCCCCCCCchHHHHHHHhcC-CCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR--KDKGEAFGMTD-F--INPDDEPNKSISELVKEMTH-GTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~--~~~~~~lga~~-v--~~~~~~~~~~~~~~~~~~~~-~~g  268 (332)
                      .++++||+|+ +++|.++++.+...|+ +|++++++...  .+..++.+.+. .  .|..+  .++..+.+.+... -.+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQ--QKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC--HHHHHHHHHHHHHHcCC
Confidence            5788999998 9999999999999999 89888775422  22334455432 2  23333  3334333333211 115


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|+++++.|.
T Consensus        84 iD~lv~~ag~   93 (251)
T PRK12481         84 IDILINNAGI   93 (251)
T ss_pred             CCEEEECCCc
Confidence            8999999874

>PRK06198 short chain dehydrogenase; Provisional

Probab=95.77  E-value=0.046  Score=48.80  Aligned_cols=82  Identities=18%  Similarity=0.206  Sum_probs=52.4

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH----HHHHcCCCee---eCCCCCCCchHHHHHHHhcC-
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKD----KGEAFGMTDF---INPDDEPNKSISELVKEMTH-  265 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~----~~~~lga~~v---~~~~~~~~~~~~~~~~~~~~-  265 (332)
                      -++++++|+|+ |++|..+++.+...|++.|++++++.++.+    .+++.+....   .|..+  .+++.+.+..... 
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   81 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD--VEDCRRVVAAADEA   81 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            35688999998 999999999999999944999998876554    2233444321   23332  2333333322210 


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      -.++|++|++.+.
T Consensus        82 ~g~id~li~~ag~   94 (260)
T PRK06198         82 FGRLDALVNAAGL   94 (260)
T ss_pred             hCCCCEEEECCCc
Confidence            0258999999874

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.77  E-value=0.058  Score=47.77  Aligned_cols=78  Identities=19%  Similarity=0.236  Sum_probs=50.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH---cCCC-ee--eCCCCCCCchHHH---HHHHhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA---FGMT-DF--INPDDEPNKSISE---LVKEMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~---lga~-~v--~~~~~~~~~~~~~---~~~~~~  264 (332)
                      .++++||+|+ |.+|..+++.+...|. +|+++++++++.+.+ .+   .+.. ..  .|..+  ..+..+   .+.+..
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   81 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSD--PDSAKAMADATVSAF   81 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHh
Confidence            5678999998 9999999999988998 899999887655332 22   2222 12  23322  222222   222222


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  ++|+||.++|.
T Consensus        82 ~--~id~vi~~ag~   93 (250)
T PRK07774         82 G--GIDYLVNNAAI   93 (250)
T ss_pred             C--CCCEEEECCCC
Confidence            2  58999999883

>PRK08264 short chain dehydrogenase; Validated

Probab=95.77  E-value=0.067  Score=47.02  Aligned_cols=75  Identities=21%  Similarity=0.336  Sum_probs=50.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC-eee--CCCCCCCchHHHHHHHhcCCCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT-DFI--NPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~-~v~--~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      .+++++|+|+ |.+|..+++.+...|.++|++++++.++.+.   .+.. .++  |..+  .+++.+.+.+ .  ..+|+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~--~~~~~~~~~~-~--~~id~   76 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTD--PASVAAAAEA-A--SDVTI   76 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCC--HHHHHHHHHh-c--CCCCE
Confidence            5678999998 9999999999999998689999888766543   3322 222  2222  2333333322 2  24899


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      ||.+.|.
T Consensus        77 vi~~ag~   83 (238)
T PRK08264         77 LVNNAGI   83 (238)
T ss_pred             EEECCCc
Confidence            9999886

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.76  E-value=0.058  Score=47.80  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=51.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc--CCC-eee--CCCCCCCchHHHHHHHhcC-CC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF--GMT-DFI--NPDDEPNKSISELVKEMTH-GT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l--ga~-~v~--~~~~~~~~~~~~~~~~~~~-~~  267 (332)
                      ++++++|+|+ |.+|..+++.+...|+ +|+++.++.++.+.. .++  +.. ..+  |..+  .++..+.+.+... -.
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~   80 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGS--AEAVEALVDFVAARWG   80 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHcC
Confidence            4678999998 9999999998888898 899999887665432 222  322 222  2222  2333333332211 12


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|+||.+.+.
T Consensus        81 ~id~vi~~ag~   91 (252)
T PRK06138         81 RLDVLVNNAGF   91 (252)
T ss_pred             CCCEEEECCCC
Confidence            68999999884

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.76  E-value=0.068  Score=48.56  Aligned_cols=92  Identities=17%  Similarity=0.146  Sum_probs=59.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcC---CCeeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFG---MTDFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lg---a~~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      ..+++++|+|+|++|.+++..+...|. +|++++++.++.+. ++++.   .......     .   +    .. ...+|
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~~~-----~---~----~~-~~~~D  180 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAFSM-----D---E----LP-LHRVD  180 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEech-----h---h----hc-ccCcc
Confidence            457889999999999999988888898 99999998877653 34432   2122211     1   0    11 12589


Q ss_pred             EEEEcCCChH--HH---HHHHHHhccCCcEEEEEcC
Q 043260          271 YGFECTGVAS--LI---SEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       271 ~vid~~g~~~--~~---~~~~~~l~~~~G~~v~~G~  301 (332)
                      +||++++..-  ..   ....+.++++ ..++.+.-
T Consensus       181 ivInatp~gm~~~~~~~~~~~~~l~~~-~~v~D~~y  215 (270)
T TIGR00507       181 LIINATSAGMSGNIDEPPVPAEKLKEG-MVVYDMVY  215 (270)
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHcCCC-CEEEEecc
Confidence            9999998631  11   1124567776 67777744

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.76  E-value=0.18  Score=43.75  Aligned_cols=113  Identities=12%  Similarity=0.018  Sum_probs=63.4

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR-KDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~-~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      .|.+|||+|+|.+|...+..+...|+ +|++++....+ +..+.+.+. ..+....     +.+.  .   -.++|+||-
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~~~-i~~~~~~-----~~~~--~---l~~adlVia   76 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEEGK-IRWKQKE-----FEPS--D---IVDAFLVIA   76 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhCCC-EEEEecC-----CChh--h---cCCceEEEE
Confidence            57899999999999999988888997 89988754322 121111121 1111111     1100  1   136899999


Q ss_pred             cCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc--CcEEEEe
Q 043260          275 CTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL--GRNLKGT  323 (332)
Q Consensus       275 ~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~--~~~i~g~  323 (332)
                      +++++ .++..+...+.. +.++..-... ....|-+..++.  ++.|.-|
T Consensus        77 aT~d~-elN~~i~~~a~~-~~lvn~~d~~-~~~~f~~Pa~~~~g~l~iaIs  124 (202)
T PRK06718         77 ATNDP-RVNEQVKEDLPE-NALFNVITDA-ESGNVVFPSALHRGKLTISVS  124 (202)
T ss_pred             cCCCH-HHHHHHHHHHHh-CCcEEECCCC-ccCeEEEeeEEEcCCeEEEEE
Confidence            99996 555555544454 5555443332 223444333333  4444333

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=95.76  E-value=0.14  Score=45.98  Aligned_cols=107  Identities=16%  Similarity=0.175  Sum_probs=62.2

Q ss_pred             CCCEEEEECC---ChHHHHHHHHHHHcCCCeEEEEcCCcc------hHHHHHHcCCC-eeeCCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL---GAVGLGVMDRARIQGAAKIIGIDKNPC------RKDKGEAFGMT-DFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~---g~vG~~~~~la~~~G~~~Vi~~~~~~~------~~~~~~~lga~-~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      .|++++|+|+   +++|.++++.+...|+ +|+++.++.+      ..+.+++.+.. ..+..+-.+.++..+.+.+...
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   83 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ   83 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence            4788999996   4899999999999999 8887754332      12222222221 2221111123344333333221


Q ss_pred             C-CCccEEEEcCCCh-------H----------------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          266 G-TGVDYGFECTGVA-------S----------------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       266 ~-~g~d~vid~~g~~-------~----------------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      . ..+|++|++.|..       .                      ..+.++..+.++ |+++.+++..+
T Consensus        84 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~-g~Iv~isS~~~  151 (258)
T PRK07370         84 KWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG-GSIVTLTYLGG  151 (258)
T ss_pred             HcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC-CeEEEEecccc
Confidence            1 1589999998731       0                      123455566676 99988876543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=95.75  E-value=0.064  Score=46.59  Aligned_cols=102  Identities=19%  Similarity=0.167  Sum_probs=77.2

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      ....+.+-..|+=+|+|+ |.+..+|++......|..+|++++=++.+++...+.-+...         .++.+.+....
T Consensus        24 a~Vp~~~~~~v~DLGCGp-GnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~a---------Dl~~w~p~~~~   93 (257)
T COG4106          24 ARVPLERPRRVVDLGCGP-GNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEA---------DLRTWKPEQPT   93 (257)
T ss_pred             hhCCccccceeeecCCCC-CHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecc---------cHhhcCCCCcc
Confidence            334556677788889998 99999999999876999999999999888877665443332         36777777788


Q ss_pred             cEEEEcCC------ChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          270 DYGFECTG------VASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       270 d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      |++|.+..      ....+...+..|.|+ |.+. +.++.
T Consensus        94 dllfaNAvlqWlpdH~~ll~rL~~~L~Pg-g~LA-VQmPd  131 (257)
T COG4106          94 DLLFANAVLQWLPDHPELLPRLVSQLAPG-GVLA-VQMPD  131 (257)
T ss_pred             chhhhhhhhhhccccHHHHHHHHHhhCCC-ceEE-EECCC
Confidence            99988654      346789999999997 7643 34443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=95.75  E-value=0.091  Score=46.72  Aligned_cols=104  Identities=16%  Similarity=0.205  Sum_probs=67.1

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      ...+..++++||-+|.|. |..++.+++..+ ..+|+.++.+++..+.+++    .|.+.-+....   .+..+.+.++.
T Consensus        62 ~l~~~~~~~~vLEiGt~~-G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~---gda~~~L~~l~  137 (234)
T PLN02781         62 MLVKIMNAKNTLEIGVFT-GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ---SDALSALDQLL  137 (234)
T ss_pred             HHHHHhCCCEEEEecCcc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---ccHHHHHHHHH
Confidence            445667788999999744 666666676653 3489999999988776644    45432221111   23334444442


Q ss_pred             C---CCCccEEEEcCCC---hHHHHHHHHHhccCCcEEEE
Q 043260          265 H---GTGVDYGFECTGV---ASLISEALEATKLGKGKVMA  298 (332)
Q Consensus       265 ~---~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~  298 (332)
                      .   ...||+||--..-   ...+..+++.++++ |.+++
T Consensus       138 ~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G-G~ii~  176 (234)
T PLN02781        138 NNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG-GIIAF  176 (234)
T ss_pred             hCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-eEEEE
Confidence            1   2379999965432   24578889999998 98875

>PRK08219 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.083  Score=45.92  Aligned_cols=76  Identities=14%  Similarity=0.133  Sum_probs=47.1

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      +++||+|+ |.+|..++..+... . +|++++++.++.+.+.+ ...-+++..+-.+.+++.+.+.+.   .+.|.||.+
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~id~vi~~   78 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQL---GRLDVLVHN   78 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhc---CCCCEEEEC
Confidence            57999998 99999988877766 6 89999998777654432 211222222210122332322221   168999999


Q ss_pred             CCC
Q 043260          276 TGV  278 (332)
Q Consensus       276 ~g~  278 (332)
                      .|.
T Consensus        79 ag~   81 (227)
T PRK08219         79 AGV   81 (227)
T ss_pred             CCc
Confidence            874

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.74  E-value=0.053  Score=55.71  Aligned_cols=78  Identities=23%  Similarity=0.319  Sum_probs=53.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc---------------------hHHHHHHcCCCeeeCCCCCCC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC---------------------RKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~---------------------~~~~~~~lga~~v~~~~~~~~  253 (332)
                      ..+++|+|+|+|+.|+.++..++..|. +|+++++.+.                     +.+.++++|.+...+..-...
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  403 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD  403 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence            358899999999999999999999999 8999987543                     345567788654443321000


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCCh
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVA  279 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~  279 (332)
                      ..+    .++.  .+||.||.++|..
T Consensus       404 i~~----~~~~--~~~DavilAtGa~  423 (654)
T PRK12769        404 ISL----ESLL--EDYDAVFVGVGTY  423 (654)
T ss_pred             CCH----HHHH--hcCCEEEEeCCCC
Confidence            111    1121  2699999998863

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.72  E-value=0.072  Score=46.98  Aligned_cols=80  Identities=10%  Similarity=0.063  Sum_probs=51.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      .+++++|+|+ |.+|..++..+...|. +|+++++++++.+.+    ++.+... ++  |..+  .+++.+.+.+... -
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSN--PEAIAPGIAELLEQF   81 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4578999998 9999999999999999 999999987765433    2233221 22  2222  2333333332211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      .+.|++|.+.|.
T Consensus        82 ~~id~lv~~ag~   93 (241)
T PRK07454         82 GCPDVLINNAGM   93 (241)
T ss_pred             CCCCEEEECCCc
Confidence            258999999884

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.72  E-value=0.045  Score=48.27  Aligned_cols=81  Identities=20%  Similarity=0.290  Sum_probs=51.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---HcCCCe----eeCCCCCCCchHH---HHHHHh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-E---AFGMTD----FINPDDEPNKSIS---ELVKEM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~---~lga~~----v~~~~~~~~~~~~---~~~~~~  263 (332)
                      ++++++|+|+ |++|..+++.+...|. +|+++++++++.+.+ .   +.+...    ..|..+...+++.   +.+.+.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            4678999998 9999999999998999 899999988766533 2   222111    1222110012222   233333


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      ..+ ..|+||.++|.
T Consensus        84 ~~~-~id~vi~~ag~   97 (239)
T PRK08703         84 TQG-KLDGIVHCAGY   97 (239)
T ss_pred             hCC-CCCEEEEeccc
Confidence            323 68999999884

>PRK08317 hypothetical protein; Provisional

Probab=95.71  E-value=0.12  Score=45.26  Aligned_cols=102  Identities=21%  Similarity=0.342  Sum_probs=69.0

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHHc----CCC-eeeCCCCCCCchHHHHHHH
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEAF----GMT-DFINPDDEPNKSISELVKE  262 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~l----ga~-~v~~~~~~~~~~~~~~~~~  262 (332)
                      .+..++.++++||.+|+|. |..+..+++..+ ..++++++.+++.++.+++.    +.. .+...+.   .+.     .
T Consensus        12 ~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~-----~   82 (241)
T PRK08317         12 FELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA---DGL-----P   82 (241)
T ss_pred             HHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc---ccC-----C
Confidence            3566788999999999977 888888888773 34899999999888877664    111 1221111   100     1


Q ss_pred             hcCCCCccEEEEcC-----CC-hHHHHHHHHHhccCCcEEEEEcC
Q 043260          263 MTHGTGVDYGFECT-----GV-ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       263 ~~~~~g~d~vid~~-----g~-~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      .. ...||+|+...     .+ ...+..+.+.|+++ |.+++...
T Consensus        83 ~~-~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  125 (241)
T PRK08317         83 FP-DGSFDAVRSDRVLQHLEDPARALAEIARVLRPG-GRVVVLDT  125 (241)
T ss_pred             CC-CCCceEEEEechhhccCCHHHHHHHHHHHhcCC-cEEEEEec
Confidence            11 23689988642     22 24678999999998 99887653

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.71  E-value=0.065  Score=49.36  Aligned_cols=80  Identities=15%  Similarity=0.195  Sum_probs=51.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc-----CCC-eee--CCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF-----GMT-DFI--NPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l-----ga~-~v~--~~~~~~~~~~~~~~~~~~~  265 (332)
                      .+++++|+|+ |++|..+++.+...|. +|+++.++.++.+.+ +++     +.. ..+  |..+  .++..+.+.+...
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~   91 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS--LASVRAAADALRA   91 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC--HHHHHHHHHHHHh
Confidence            5788999998 9999999998888998 899998887665422 221     121 122  3322  2333333333321


Q ss_pred             -CCCccEEEEcCCC
Q 043260          266 -GTGVDYGFECTGV  278 (332)
Q Consensus       266 -~~g~d~vid~~g~  278 (332)
                       -.++|++|.++|.
T Consensus        92 ~~~~iD~li~nAg~  105 (306)
T PRK06197         92 AYPRIDLLINNAGV  105 (306)
T ss_pred             hCCCCCEEEECCcc
Confidence             1258999999873

>PRK12746 short chain dehydrogenase; Provisional

Probab=95.70  E-value=0.17  Score=44.96  Aligned_cols=80  Identities=19%  Similarity=0.255  Sum_probs=49.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHH-HHHc---CCC-eee--CCCCCCCchHHHHHHHhc--
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGI-DKNPCRKDK-GEAF---GMT-DFI--NPDDEPNKSISELVKEMT--  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~-~~~~~~~~~-~~~l---ga~-~v~--~~~~~~~~~~~~~~~~~~--  264 (332)
                      .+.+++|+|+ |.+|..+++.+...|. +|++. .++.++.+. ..++   +.. .++  |..+  .+++.+.+.+..  
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~i~~~~~~~~~~   81 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAADETIREIESNGGKAFLIEADLNS--IDGVKKLVEQLKNE   81 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCC--HHHHHHHHHHHHHH
Confidence            3578999998 9999999999988998 77664 566655432 2222   322 122  3322  334443333321  


Q ss_pred             -----CCCCccEEEEcCCC
Q 043260          265 -----HGTGVDYGFECTGV  278 (332)
Q Consensus       265 -----~~~g~d~vid~~g~  278 (332)
                           +..++|++|.+.|.
T Consensus        82 ~~~~~~~~~id~vi~~ag~  100 (254)
T PRK12746         82 LQIRVGTSEIDILVNNAGI  100 (254)
T ss_pred             hccccCCCCccEEEECCCC
Confidence                 11368999998874

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.70  E-value=0.061  Score=47.78  Aligned_cols=79  Identities=16%  Similarity=0.172  Sum_probs=50.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---HcCCC-eee--CCCCCCCchHHHHHHHhcCC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-E---AFGMT-DFI--NPDDEPNKSISELVKEMTHG-  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~---~lga~-~v~--~~~~~~~~~~~~~~~~~~~~-  266 (332)
                      ++++++|+|+ |.+|...++.+...|. +|++++++.++.+.+ +   +.+.. ..+  +..+  ..+..+.+.+.... 
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   83 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGE--MEQIDALFAHIRERH   83 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4578999998 9999999999999998 999999887665433 2   22322 222  2222  23333333322111 


Q ss_pred             CCccEEEEcCC
Q 043260          267 TGVDYGFECTG  277 (332)
Q Consensus       267 ~g~d~vid~~g  277 (332)
                      ...|+++.+.+
T Consensus        84 ~~id~li~~ag   94 (252)
T PRK07035         84 GRLDILVNNAA   94 (252)
T ss_pred             CCCCEEEECCC
Confidence            14899999887

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.044  Score=48.74  Aligned_cols=80  Identities=23%  Similarity=0.361  Sum_probs=51.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCC-eeeCCCCCCCchHHHHHH---HhcCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMT-DFINPDDEPNKSISELVK---EMTHG  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~-~v~~~~~~~~~~~~~~~~---~~~~~  266 (332)
                      ++++++|+|+ |++|..+++.+...|. +|+++++++++.+.+    ++.+.. ..+..+-....++.+.+.   +.. +
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~-g   83 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY-G   83 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh-C
Confidence            4689999998 9999999998888998 899999987765432    333432 222111111223333222   222 2


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                       .+|++|.+.|.
T Consensus        84 -~id~li~~ag~   94 (253)
T PRK06172         84 -RLDYAFNNAGI   94 (253)
T ss_pred             -CCCEEEECCCC
Confidence             58999998874

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.69  E-value=0.073  Score=49.46  Aligned_cols=36  Identities=14%  Similarity=0.253  Sum_probs=32.5

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~  170 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRK  170 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence            57899999999999999999999999 9999987654

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.68  E-value=0.071  Score=48.34  Aligned_cols=82  Identities=16%  Similarity=0.229  Sum_probs=50.6

Q ss_pred             CCCCEEEEECC---ChHHHHHHHHHHHcCCCeEEEEcCCc---chHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCC-
Q 043260          195 EKGSSVAVFGL---GAVGLGVMDRARIQGAAKIIGIDKNP---CRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHG-  266 (332)
Q Consensus       195 ~~g~~vlV~G~---g~vG~~~~~la~~~G~~~Vi~~~~~~---~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~-  266 (332)
                      -.++++||+|+   +++|.++++.+...|+ +|+++.+++   ++.+ +.++++....+..+-.+.++..+.+.+.... 
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   86 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW   86 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence            35788999987   5899999999999999 898887654   2222 2344553322222221234444444333211 


Q ss_pred             CCccEEEEcCC
Q 043260          267 TGVDYGFECTG  277 (332)
Q Consensus       267 ~g~d~vid~~g  277 (332)
                      ...|++|++.|
T Consensus        87 g~iD~lv~nAG   97 (272)
T PRK08159         87 GKLDFVVHAIG   97 (272)
T ss_pred             CCCcEEEECCc
Confidence            15899999987

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.68  E-value=0.084  Score=48.19  Aligned_cols=89  Identities=17%  Similarity=0.278  Sum_probs=59.3

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~  278 (332)
                      +|.|+|.|.+|...+..++..|. +|+++++++++.+.+.+.|......      .+. +.+      ..+|+||.|+..
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~~~------~~~-~~~------~~aDlVilavp~   67 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDEAS------TDL-SLL------KDCDLVILALPI   67 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCccccc------CCH-hHh------cCCCEEEEcCCH
Confidence            68899999999998888888898 8999999998888888877422111      111 111      257899998886


Q ss_pred             hHH---HHHHHHHhccCCcEEEEEcCC
Q 043260          279 ASL---ISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       279 ~~~---~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ...   +......++++ ..+..+++.
T Consensus        68 ~~~~~~~~~l~~~l~~~-~ii~d~~Sv   93 (279)
T PRK07417         68 GLLLPPSEQLIPALPPE-AIVTDVGSV   93 (279)
T ss_pred             HHHHHHHHHHHHhCCCC-cEEEeCcch
Confidence            422   23333344444 455555543

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.67  E-value=0.16  Score=44.71  Aligned_cols=106  Identities=17%  Similarity=0.203  Sum_probs=62.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HH----HHHHcCCC-eeeCCCCCCCchHHHHHHHhcC-CC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR-KD----KGEAFGMT-DFINPDDEPNKSISELVKEMTH-GT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~-~~----~~~~lga~-~v~~~~~~~~~~~~~~~~~~~~-~~  267 (332)
                      ++++++|+|+ |++|..+++.+...|. +++++.++... .+    .+++.+.. ..+..+-...+++.+.+.+... -.
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5688999998 9999999999999999 77776654332 22    22333432 2222211112333333332211 12


Q ss_pred             CccEEEEcCCCh-------------------------HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          268 GVDYGFECTGVA-------------------------SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       268 g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ++|++|.+.|..                         ..+..+++.+.+. |+++.++...
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~~  142 (245)
T PRK12937         83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQG-GRIINLSTSV  142 (245)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccC-cEEEEEeecc
Confidence            589999988841                         0123444555666 8999887654

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.66  E-value=0.21  Score=46.53  Aligned_cols=105  Identities=13%  Similarity=0.080  Sum_probs=68.1

Q ss_pred             CCCCEEEEECCChHHHHHHHHHH-HcCCCeEEEEcCCcchHHH-HHHc---CCCeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRAR-IQGAAKIIGIDKNPCRKDK-GEAF---GMTDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~-~~G~~~Vi~~~~~~~~~~~-~~~l---ga~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      ....+++|+|+|..|...+..+. ..+.++|.+.+++.++.+. ++++   |.. +...     .+..+.+      .++
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~-~~~~-----~~~~~av------~~a  190 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD-AEVV-----TDLEAAV------RQA  190 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc-eEEe-----CCHHHHH------hcC
Confidence            55688999999999999876444 4677799999999888653 3444   322 2111     2222222      258


Q ss_pred             cEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHh
Q 043260          270 DYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPA  313 (332)
Q Consensus       270 d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~  313 (332)
                      |+|+.++++...+- -.+.++++ -.+..+|......-+++...
T Consensus       191 DIVi~aT~s~~pvl-~~~~l~~g-~~i~~ig~~~~~~~El~~~~  232 (314)
T PRK06141        191 DIISCATLSTEPLV-RGEWLKPG-THLDLVGNFTPDMRECDDEA  232 (314)
T ss_pred             CEEEEeeCCCCCEe-cHHHcCCC-CEEEeeCCCCcccccCCHHH
Confidence            99999988753321 12678887 77778887654455566543

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=95.66  E-value=0.11  Score=47.76  Aligned_cols=70  Identities=17%  Similarity=0.155  Sum_probs=50.0

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~  278 (332)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|....        .+..+.+      ...|+||.|+..
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~~~------~~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGAVTA--------ETARQVT------EQADVIFTMVPD   65 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCccc--------CCHHHHH------hcCCEEEEecCC
Confidence            37889999999998888888998 99999999999888877765321        1122222      136788888776


Q ss_pred             hHHHH
Q 043260          279 ASLIS  283 (332)
Q Consensus       279 ~~~~~  283 (332)
                      ...+.
T Consensus        66 ~~~~~   70 (291)
T TIGR01505        66 SPQVE   70 (291)
T ss_pred             HHHHH
Confidence            53333

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=95.66  E-value=0.084  Score=44.98  Aligned_cols=93  Identities=20%  Similarity=0.238  Sum_probs=59.2

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe--eeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD--FINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~--v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      ++++||-+|+|. |..++.+++.....+|+++|.+++..+.+    ++.+.+.  ++..+      ..    ++.....|
T Consensus        42 ~~~~vLDiGcGt-G~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d------~~----~~~~~~~f  110 (181)
T TIGR00138        42 DGKKVIDIGSGA-GFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGR------AE----DFQHEEQF  110 (181)
T ss_pred             CCCeEEEecCCC-CccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecc------hh----hccccCCc
Confidence            388899999865 56666666555434899999998766544    3455432  22221      11    11223479


Q ss_pred             cEEEEcCC-C-hHHHHHHHHHhccCCcEEEEEc
Q 043260          270 DYGFECTG-V-ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       270 d~vid~~g-~-~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      |+|+...- . ++.+..+.+.|+++ |++++.-
T Consensus       111 D~I~s~~~~~~~~~~~~~~~~Lkpg-G~lvi~~  142 (181)
T TIGR00138       111 DVITSRALASLNVLLELTLNLLKVG-GYFLAYK  142 (181)
T ss_pred             cEEEehhhhCHHHHHHHHHHhcCCC-CEEEEEc
Confidence            99987541 1 24567788899998 9988764

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK08643 acetoin reductase; Validated

Probab=95.64  E-value=0.067  Score=47.63  Aligned_cols=79  Identities=16%  Similarity=0.207  Sum_probs=50.7

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHHhcC-CC
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKEMTH-GT  267 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~~~~-~~  267 (332)
                      ++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+    ++.+... .+  |..+  .+++.+.+.+... -.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSD--RDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            568999998 9999999999999998 899999887765433    2223321 12  3322  2333333332211 12


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      +.|++|.+.|.
T Consensus        79 ~id~vi~~ag~   89 (256)
T PRK08643         79 DLNVVVNNAGV   89 (256)
T ss_pred             CCCEEEECCCC
Confidence            58999999874

>PRK01581 speE spermidine synthase; Validated

Probab=95.63  E-value=0.13  Score=48.46  Aligned_cols=99  Identities=11%  Similarity=0.055  Sum_probs=65.7

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC---------C--CeeeCCCCCCCchHHHHHHHh
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG---------M--TDFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg---------a--~~v~~~~~~~~~~~~~~~~~~  263 (332)
                      ...++|||+|+|. |.++..+++..+..+|++++.+++-.+.++++.         .  ..+ ...   ..+..+.+.+.
T Consensus       149 ~~PkrVLIIGgGd-G~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV-~vv---i~Da~~fL~~~  223 (374)
T PRK01581        149 IDPKRVLILGGGD-GLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRV-NVH---VCDAKEFLSSP  223 (374)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCce-EEE---ECcHHHHHHhc
Confidence            4456899999764 667777777666669999999999999888621         0  111 000   12333445442


Q ss_pred             cCCCCccEEEEcCCCh-----------HHHHHHHHHhccCCcEEEEEcC
Q 043260          264 THGTGVDYGFECTGVA-----------SLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~-----------~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                        ...||+||--...+           +.+..+.+.|+++ |.++.-..
T Consensus       224 --~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs~  269 (374)
T PRK01581        224 --SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTED-GAFVCQSN  269 (374)
T ss_pred             --CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence              23699999865432           3567889999998 99877643

>PRK07577 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.056  Score=47.37  Aligned_cols=75  Identities=20%  Similarity=0.235  Sum_probs=50.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC-eeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT-DFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      ++++++|+|+ |.+|..+++.+...|. +|++++++.++     ..... ...|..+  .+++.+.+.+.....+.|++|
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~-----~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~d~vi   73 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAID-----DFPGELFACDLAD--IEQTAATLAQINEIHPVDAIV   73 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCccc-----ccCceEEEeeCCC--HHHHHHHHHHHHHhCCCcEEE
Confidence            3578999998 9999999999999998 89999887654     11211 1123322  244444444443333689999


Q ss_pred             EcCCC
Q 043260          274 ECTGV  278 (332)
Q Consensus       274 d~~g~  278 (332)
                      .+.|.
T Consensus        74 ~~ag~   78 (234)
T PRK07577         74 NNVGI   78 (234)
T ss_pred             ECCCC
Confidence            98874

>PRK04457 spermidine synthase; Provisional

Probab=95.61  E-value=0.15  Score=46.17  Aligned_cols=95  Identities=13%  Similarity=0.119  Sum_probs=66.0

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-CC----C--eeeCCCCCCCchHHHHHHHhcCCC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-GM----T--DFINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-ga----~--~v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      .++++||++|+|+ |.++..+++.....+|++++.+++-.+.+++. +.    +  .++.      .+..+.+.+. . .
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~------~Da~~~l~~~-~-~  135 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE------ADGAEYIAVH-R-H  135 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE------CCHHHHHHhC-C-C
Confidence            4567899999976 77888888877545899999999999888763 32    1  2222      2333444433 2 3


Q ss_pred             CccEEEEcC--C--------ChHHHHHHHHHhccCCcEEEEE
Q 043260          268 GVDYGFECT--G--------VASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       268 g~d~vid~~--g--------~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      .+|+|+-..  +        +.+.+..+.+.|+++ |++++.
T Consensus       136 ~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pg-Gvlvin  176 (262)
T PRK04457        136 STDVILVDGFDGEGIIDALCTQPFFDDCRNALSSD-GIFVVN  176 (262)
T ss_pred             CCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCC-cEEEEE
Confidence            699998422  1        136788999999998 998874

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.60  E-value=0.086  Score=46.94  Aligned_cols=82  Identities=15%  Similarity=0.183  Sum_probs=52.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH---cCCCe-eeCCCCCCCchHHHHHHHhcC-CCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA---FGMTD-FINPDDEPNKSISELVKEMTH-GTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~---lga~~-v~~~~~~~~~~~~~~~~~~~~-~~g  268 (332)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ .+   .+... .+..+-.+.+++.+.+.+... -..
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   86 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP   86 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            4678999998 9999999999999998 999999987765432 22   23221 221211122333333333211 125


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|+++.+.|.
T Consensus        87 id~vi~~ag~   96 (254)
T PRK08085         87 IDVLINNAGI   96 (254)
T ss_pred             CCEEEECCCc
Confidence            8999999874

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.60  E-value=0.072  Score=48.17  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=50.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH---cCCC-eee--CCCCCCCchHHHHHHHhcCC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA---FGMT-DFI--NPDDEPNKSISELVKEMTHG-  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~---lga~-~v~--~~~~~~~~~~~~~~~~~~~~-  266 (332)
                      .+++++|+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++   .+.. ..+  |..+  ..+....+.+.... 
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   85 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLD--KESLEQARQQILEDF   85 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4688999998 9999999999999999 899999887655432 22   2332 122  2222  23333333322111 


Q ss_pred             CCccEEEEcCC
Q 043260          267 TGVDYGFECTG  277 (332)
Q Consensus       267 ~g~d~vid~~g  277 (332)
                      ..+|++|.++|
T Consensus        86 g~id~li~~ag   96 (278)
T PRK08277         86 GPCDILINGAG   96 (278)
T ss_pred             CCCCEEEECCC
Confidence            25899999987

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.59  E-value=0.12  Score=46.05  Aligned_cols=101  Identities=15%  Similarity=0.153  Sum_probs=60.9

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC--CCee-eCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG--MTDF-INPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg--a~~v-~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      ..++++||+|+ |.+|..+++.+...|. +|+++.++.++.......+  ...+ .|..+   .  .+.+.+.. +.++|
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d---~--~~~l~~~~-~~~~d   87 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKTSLPQDPSLQIVRADVTE---G--SDKLVEAI-GDDSD   87 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhcccCCceEEEEeeCCC---C--HHHHHHHh-hcCCC
Confidence            34678999998 9999999988888898 8998888876654322111  2222 12221   1  12232222 12699


Q ss_pred             EEEEcCCChH-------------HHHHHHHHhccC-CcEEEEEcCC
Q 043260          271 YGFECTGVAS-------------LISEALEATKLG-KGKVMAIGAA  302 (332)
Q Consensus       271 ~vid~~g~~~-------------~~~~~~~~l~~~-~G~~v~~G~~  302 (332)
                      +||.+.|...             ....+++.+... .++++.++..
T Consensus        88 ~vi~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         88 AVICATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             EEEECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            9999877421             123444544443 2588887765

>PLN02253 xanthoxin dehydrogenase

Probab=95.58  E-value=0.061  Score=48.71  Aligned_cols=80  Identities=18%  Similarity=0.184  Sum_probs=50.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCC--C-ee--eCCCCCCCchHHHHHHHhcCC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGM--T-DF--INPDDEPNKSISELVKEMTHG-T  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga--~-~v--~~~~~~~~~~~~~~~~~~~~~-~  267 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+. ..+++.  . ..  .|..+  .+++.+.+.+.... .
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~g   93 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV--EDDVSRAVDFTVDKFG   93 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            4678999998 9999999998888999 89999887665443 333322  1 12  23332  23333333322111 2


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus        94 ~id~li~~Ag~  104 (280)
T PLN02253         94 TLDIMVNNAGL  104 (280)
T ss_pred             CCCEEEECCCc
Confidence            58999998874

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.58  E-value=0.15  Score=45.07  Aligned_cols=75  Identities=20%  Similarity=0.266  Sum_probs=48.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC-eee--CCCCCCCchHHHHHHHhcC-CCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT-DFI--NPDDEPNKSISELVKEMTH-GTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~-~v~--~~~~~~~~~~~~~~~~~~~-~~g~d  270 (332)
                      +++++||+|+ |.+|...++.+...|. +|++++++.     ....+.. ..+  |..+  .+++.+.+.+... -..+|
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~-----~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id   78 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF-----LTQEDYPFATFVLDVSD--AAAVAQVCQRLLAETGPLD   78 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch-----hhhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence            4688999998 9999999999988998 899998765     2222222 122  2222  2333333333211 12589


Q ss_pred             EEEEcCCC
Q 043260          271 YGFECTGV  278 (332)
Q Consensus       271 ~vid~~g~  278 (332)
                      ++|.+.|.
T Consensus        79 ~vi~~ag~   86 (252)
T PRK08220         79 VLVNAAGI   86 (252)
T ss_pred             EEEECCCc
Confidence            99999875

>PRK06720 hypothetical protein; Provisional

Probab=95.56  E-value=0.11  Score=43.86  Aligned_cols=82  Identities=22%  Similarity=0.215  Sum_probs=51.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---HcCCCe-eeCCCCCCCchHHHHHHHhc-CCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-E---AFGMTD-FINPDDEPNKSISELVKEMT-HGTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~---~lga~~-v~~~~~~~~~~~~~~~~~~~-~~~g  268 (332)
                      ++++++|+|+ +++|...+..+...|. +|++++++.++.+.. +   +.+... .+..+-...+++.+.+.+.. .-.+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~   93 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR   93 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5788999998 8999999988888998 899999887655322 2   234332 22222111233333332211 1125


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      .|+++++.|.
T Consensus        94 iDilVnnAG~  103 (169)
T PRK06720         94 IDMLFQNAGL  103 (169)
T ss_pred             CCEEEECCCc
Confidence            8999999885

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.56  E-value=0.15  Score=39.52  Aligned_cols=93  Identities=17%  Similarity=0.194  Sum_probs=61.6

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCCh
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVA  279 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~  279 (332)
                      |+|+|.|.+|...++.++..+. +|++++.++++.+.+++.|.. ++..+.   .+. +.+++. +-..+|.++-++++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~-~i~gd~---~~~-~~l~~a-~i~~a~~vv~~~~~d   73 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE-VIYGDA---TDP-EVLERA-GIEKADAVVILTDDD   73 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE-EEES-T---TSH-HHHHHT-TGGCESEEEEESSSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc-cccccc---hhh-hHHhhc-CccccCEEEEccCCH
Confidence            5788999999999999999665 999999999999999988854 443332   221 223332 334789999998875


Q ss_pred             HHH---HHHHHHhccCCcEEEEEc
Q 043260          280 SLI---SEALEATKLGKGKVMAIG  300 (332)
Q Consensus       280 ~~~---~~~~~~l~~~~G~~v~~G  300 (332)
                      ..-   ...++.+.+. .+++..-
T Consensus        74 ~~n~~~~~~~r~~~~~-~~ii~~~   96 (116)
T PF02254_consen   74 EENLLIALLARELNPD-IRIIARV   96 (116)
T ss_dssp             HHHHHHHHHHHHHTTT-SEEEEEE
T ss_pred             HHHHHHHHHHHHHCCC-CeEEEEE
Confidence            332   2333444444 5655443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.55  E-value=0.16  Score=42.23  Aligned_cols=82  Identities=10%  Similarity=0.125  Sum_probs=52.9

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .|.+|+|+|+|.+|.--++.+...|+ +|++++  ++..+.+++++.-.. ..+     .+.+     .+-.++|+||-+
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~~-~~~-----~~~~-----~dl~~a~lViaa   77 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYITW-KQK-----TFSN-----DDIKDAHLIYAA   77 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcEE-Eec-----ccCh-----hcCCCceEEEEC
Confidence            67889999999999998888888998 888884  333333444542121 111     1111     112368999999


Q ss_pred             CCChHHHHHHHHHhccC
Q 043260          276 TGVASLISEALEATKLG  292 (332)
Q Consensus       276 ~g~~~~~~~~~~~l~~~  292 (332)
                      +++. .++..+...++.
T Consensus        78 T~d~-e~N~~i~~~a~~   93 (157)
T PRK06719         78 TNQH-AVNMMVKQAAHD   93 (157)
T ss_pred             CCCH-HHHHHHHHHHHH
Confidence            9995 556555555544

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.55  E-value=0.049  Score=49.49  Aligned_cols=80  Identities=19%  Similarity=0.231  Sum_probs=51.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---HcCCCe-ee--CCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-E---AFGMTD-FI--NPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~---~lga~~-v~--~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      +++++||+|+ |++|.++++.+...|+ +|++++++.++++.+ +   ..|.+. .+  |..+  .+++.+.+.+... -
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   81 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRH--REEVTHLADEAFRLL   81 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCC--HHHHHHHHHHHHHHc
Confidence            5788999998 9999999999999999 899999887665532 2   234322 22  2222  2333333322211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ...|++|++.|.
T Consensus        82 g~id~li~nAg~   93 (275)
T PRK05876         82 GHVDVVFSNAGI   93 (275)
T ss_pred             CCCCEEEECCCc
Confidence            158999999873

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.53  E-value=0.079  Score=47.21  Aligned_cols=80  Identities=15%  Similarity=0.301  Sum_probs=52.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHHhc-CC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKEMT-HG  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~~~-~~  266 (332)
                      .++++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    ++.|... .+  |..+  .+++.+.+.+.. .-
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   85 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD--HDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            5789999998 9999999999888999 899999987765432    2233321 12  3322  233333333221 11


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ...|++|.+.|.
T Consensus        86 ~~~d~li~~ag~   97 (255)
T PRK07523         86 GPIDILVNNAGM   97 (255)
T ss_pred             CCCCEEEECCCC
Confidence            258999999884

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=95.53  E-value=0.08  Score=46.80  Aligned_cols=81  Identities=25%  Similarity=0.213  Sum_probs=51.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCC-eeeCCCCCCCchHHHHHHHhcCC-CC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMT-DFINPDDEPNKSISELVKEMTHG-TG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~-~v~~~~~~~~~~~~~~~~~~~~~-~g  268 (332)
                      +++++||+|+ |.+|..+++.+...|. +|++++++.++.+.+    ++.+.. .++..+-...+++.+.+.+.... .+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP   80 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999998 9999999999999998 899998887665433    222322 22222211123333333332211 25


Q ss_pred             ccEEEEcCC
Q 043260          269 VDYGFECTG  277 (332)
Q Consensus       269 ~d~vid~~g  277 (332)
                      .|++|.+.|
T Consensus        81 ~d~vi~~ag   89 (250)
T TIGR03206        81 VDVLVNNAG   89 (250)
T ss_pred             CCEEEECCC
Confidence            899999987

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.52  E-value=0.18  Score=47.21  Aligned_cols=105  Identities=18%  Similarity=0.213  Sum_probs=69.6

Q ss_pred             CCCCEEEEECCChHHHHHHHHHH-HcCCCeEEEEcCCcchHHH-HHHc----CCCeeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRAR-IQGAAKIIGIDKNPCRKDK-GEAF----GMTDFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~-~~G~~~Vi~~~~~~~~~~~-~~~l----ga~~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      +...+++|+|+|..+.+.+..+. ..+.++|.+.+++.+|.+. ++++    |.. +...     ++..+.+      ..
T Consensus       127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~-v~~~-----~~~~~av------~~  194 (326)
T TIGR02992       127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID-VTAA-----TDPRAAM------SG  194 (326)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce-EEEe-----CCHHHHh------cc
Confidence            45568999999999988877776 5787899999999888663 3333    432 2222     2233333      25


Q ss_pred             ccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHh
Q 043260          269 VDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPA  313 (332)
Q Consensus       269 ~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~  313 (332)
                      +|+|+.++++...+ --.+.++++ -.+..+|......-++++.-
T Consensus       195 aDiVvtaT~s~~p~-i~~~~l~~g-~~i~~vg~~~p~~rEld~~~  237 (326)
T TIGR02992       195 ADIIVTTTPSETPI-LHAEWLEPG-QHVTAMGSDAEHKNEIDPAV  237 (326)
T ss_pred             CCEEEEecCCCCcE-ecHHHcCCC-cEEEeeCCCCCCceecCHHH
Confidence            89999999875332 123468886 78888887654455666554

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK07074 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.081  Score=47.14  Aligned_cols=79  Identities=18%  Similarity=0.251  Sum_probs=50.7

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCC--eee--CCCCCCCchHHHHHHHhcC-CCCc
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMT--DFI--NPDDEPNKSISELVKEMTH-GTGV  269 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~--~v~--~~~~~~~~~~~~~~~~~~~-~~g~  269 (332)
                      ++++||+|+ |.+|...+..+...|. +|++++++.++.+.+ +++...  +.+  |..+  .+++.+.+.+... -.++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTD--AASLAAALANAAAERGPV   78 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            468999998 9999999998888998 899999988776533 333211  222  3222  2333333332211 1258


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|.+.|.
T Consensus        79 d~vi~~ag~   87 (257)
T PRK07074         79 DVLVANAGA   87 (257)
T ss_pred             CEEEECCCC
Confidence            999999874

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=95.52  E-value=0.49  Score=43.06  Aligned_cols=114  Identities=22%  Similarity=0.276  Sum_probs=72.8

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHc----CC------CeEEEEcCC-----------cchHHHHHHcCCCeeeCCCCCCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQ----GA------AKIIGIDKN-----------PCRKDKGEAFGMTDFINPDDEPNK  254 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~----G~------~~Vi~~~~~-----------~~~~~~~~~lga~~v~~~~~~~~~  254 (332)
                      ...++++.|+|..|...+.++...    |.      ++++++|+.           +.+..+++....     ..   ..
T Consensus        24 ~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~-----~~---~~   95 (279)
T cd05312          24 SDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEE-----KE---GK   95 (279)
T ss_pred             hhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCc-----cc---CC
Confidence            457889999999998888777765    87      689999875           122333333211     11   14


Q ss_pred             hHHHHHHHhcCCCCccEEEEcCCChHHH-HHHHHHhc---cCCcEEEEEcCCCCCcccCChHhHhc---CcEEEEe
Q 043260          255 SISELVKEMTHGTGVDYGFECTGVASLI-SEALEATK---LGKGKVMAIGAANEAKVPLNFPAIAL---GRNLKGT  323 (332)
Q Consensus       255 ~~~~~~~~~~~~~g~d~vid~~g~~~~~-~~~~~~l~---~~~G~~v~~G~~~~~~~~~~~~~~~~---~~~i~g~  323 (332)
                      ++.+.++..    ++|++|-+++.+..+ ++.++.|.   +. =.+.-+.++. ...+..+.+.+.   +..|..+
T Consensus        96 ~L~e~i~~v----~ptvlIG~S~~~g~ft~evv~~Ma~~~~~-PIIFaLSNPt-~~~E~~pe~a~~~t~G~ai~AT  165 (279)
T cd05312          96 SLLEVVKAV----KPTVLIGLSGVGGAFTEEVVRAMAKSNER-PIIFALSNPT-SKAECTAEDAYKWTDGRALFAS  165 (279)
T ss_pred             CHHHHHHhc----CCCEEEEeCCCCCCCCHHHHHHHHhcCCC-CEEEECCCcC-CccccCHHHHHHhhcCCEEEEe
Confidence            566666543    689999988633233 57777776   44 4555666665 456777777665   5656654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK07791 short chain dehydrogenase; Provisional

Probab=95.51  E-value=0.1  Score=47.67  Aligned_cols=81  Identities=21%  Similarity=0.214  Sum_probs=50.6

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc---------chHH-HHH---HcCCCe-ee--CCCCCCCchHH
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP---------CRKD-KGE---AFGMTD-FI--NPDDEPNKSIS  257 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~---------~~~~-~~~---~lga~~-v~--~~~~~~~~~~~  257 (332)
                      -+++++||+|+ +++|.++++.+...|+ +|++++++.         ++.+ .++   +.|... .+  |..+  .++..
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~v~   80 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIAD--WDGAA   80 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCC--HHHHH
Confidence            46789999998 9999999999888999 888887654         3332 222   234332 22  2222  23333


Q ss_pred             HHHHHhcCC-CCccEEEEcCCC
Q 043260          258 ELVKEMTHG-TGVDYGFECTGV  278 (332)
Q Consensus       258 ~~~~~~~~~-~g~d~vid~~g~  278 (332)
                      +.+.+.... ..+|++|++.|.
T Consensus        81 ~~~~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         81 NLVDAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHHHHhcCCCCEEEECCCC
Confidence            333332211 258999999874

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.49  E-value=0.092  Score=46.83  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=50.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HH-H---HHHcCCCe-ee--CCCCCCCchHHHHHHHhcC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR-KD-K---GEAFGMTD-FI--NPDDEPNKSISELVKEMTH-  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~-~~-~---~~~lga~~-v~--~~~~~~~~~~~~~~~~~~~-  265 (332)
                      +++++||+|+ +++|..+++.+...|+ +|++++++.++ .+ .   +++.+... .+  |..+  .++..+.+.+... 
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~   83 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTS--KADLRAAVARTEAE   83 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4778999998 9999999999999999 89998876542 22 2   22334321 22  2222  2334333333211 


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      -...|++|++.|.
T Consensus        84 ~g~id~li~~ag~   96 (254)
T PRK06114         84 LGALTLAVNAAGI   96 (254)
T ss_pred             cCCCCEEEECCCC
Confidence            1258999999884

>PRK08328 hypothetical protein; Provisional

Probab=95.48  E-value=0.066  Score=47.54  Aligned_cols=36  Identities=33%  Similarity=0.474  Sum_probs=31.7

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .+.+|+|+|+|++|..++..+..+|.++++++|.+.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            456799999999999999999999999999998543

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.47  E-value=0.085  Score=47.59  Aligned_cols=79  Identities=19%  Similarity=0.292  Sum_probs=50.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc---C--CC-eee--CCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF---G--MT-DFI--NPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l---g--a~-~v~--~~~~~~~~~~~~~~~~~~~  265 (332)
                      +++++||+|+ |.+|..+++.+...|. +|++++++.++.+.. +++   +  .. .++  |..+  .++..+.+.+...
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   82 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD--EDQVARAVDAATA   82 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC--HHHHHHHHHHHHH
Confidence            4688999998 9999999999999999 899999887665422 222   1  11 222  3322  2333333332211


Q ss_pred             -CCCccEEEEcCC
Q 043260          266 -GTGVDYGFECTG  277 (332)
Q Consensus       266 -~~g~d~vid~~g  277 (332)
                       -.++|++|.+.|
T Consensus        83 ~~~~~d~li~~ag   95 (276)
T PRK05875         83 WHGRLHGVVHCAG   95 (276)
T ss_pred             HcCCCCEEEECCC
Confidence             125899999887

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.46  E-value=0.097  Score=45.83  Aligned_cols=35  Identities=20%  Similarity=0.317  Sum_probs=31.5

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ...+|+|+|+|++|..+++.+...|..+++++|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            44679999999999999999999999899999987

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.43  E-value=0.18  Score=44.61  Aligned_cols=105  Identities=16%  Similarity=0.155  Sum_probs=61.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC-cchHH----HHHHcCCCe-e--eCCCCCCCchHHHHHHHhcC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN-PCRKD----KGEAFGMTD-F--INPDDEPNKSISELVKEMTH-  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~-~~~~~----~~~~lga~~-v--~~~~~~~~~~~~~~~~~~~~-  265 (332)
                      .+.++||+|+ |.+|..+++.+...|+ +|+.+.++ .++.+    .+++.+... .  .|..+  ..+....+.+... 
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   81 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVST--REGCETLAKATIDR   81 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCC--HHHHHHHHHHHHHH
Confidence            3578999998 9999999998888998 77665543 22222    223344331 2  23322  2223222222211 


Q ss_pred             CCCccEEEEcCCCh----------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          266 GTGVDYGFECTGVA----------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       266 ~~g~d~vid~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      -.++|+||.++|..          +               ..+.+.+.+++. |+++.+++...
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~  144 (252)
T PRK06077         82 YGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG-GAIVNIASVAG  144 (252)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC-cEEEEEcchhc
Confidence            12689999999831          0               133445566676 89999987654

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=95.43  E-value=0.18  Score=46.36  Aligned_cols=71  Identities=17%  Similarity=0.175  Sum_probs=50.0

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      .+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|...+        .+..+.+      ...|+||.++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~~~~--------~~~~e~~------~~~d~vi~~vp   67 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGAETA--------STAKAVA------EQCDVIITMLP   67 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec--------CCHHHHH------hcCCEEEEeCC
Confidence            368999999999988888888898 89999999988887777664211        1222222      14688888877


Q ss_pred             ChHHHH
Q 043260          278 VASLIS  283 (332)
Q Consensus       278 ~~~~~~  283 (332)
                      ....+.
T Consensus        68 ~~~~~~   73 (296)
T PRK11559         68 NSPHVK   73 (296)
T ss_pred             CHHHHH
Confidence            654433

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.42  E-value=0.29  Score=45.09  Aligned_cols=116  Identities=16%  Similarity=0.202  Sum_probs=67.9

Q ss_pred             CEEEEECCChHHHHHH-HHHHHcCCCeEE-EEcCCcc--hHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          198 SSVAVFGLGAVGLGVM-DRARIQGAAKII-GIDKNPC--RKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~-~la~~~G~~~Vi-~~~~~~~--~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      -++.|+|.|.+|...+ .+.+.-+. ++. +++.+++  .++.++++|.....       .++.+.+.+ .+-..+|+||
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~v-elvAVvdid~es~gla~A~~~Gi~~~~-------~~ie~LL~~-~~~~dIDiVf   75 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHL-EPGAMVGIDPESDGLARARRLGVATSA-------EGIDGLLAM-PEFDDIDIVF   75 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCc-EEEEEEeCChhhHHHHHHHHcCCCccc-------CCHHHHHhC-cCCCCCCEEE
Confidence            5689999999998744 44443456 555 4555554  34567778754322       222222321 1113699999


Q ss_pred             EcCCChHHHHHHHHHhccCCcEEEEEcCCCC---CcccCChHhHhc--CcEEEEe
Q 043260          274 ECTGVASLISEALEATKLGKGKVMAIGAANE---AKVPLNFPAIAL--GRNLKGT  323 (332)
Q Consensus       274 d~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~---~~~~~~~~~~~~--~~~i~g~  323 (332)
                      ++++...+...+.+++..+ -+++.......   --.++|...+..  +.+++..
T Consensus        76 ~AT~a~~H~e~a~~a~eaG-k~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~  129 (302)
T PRK08300         76 DATSAGAHVRHAAKLREAG-IRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTC  129 (302)
T ss_pred             ECCCHHHHHHHHHHHHHcC-CeEEECCccccCCcccCcCCHHHHhcccCCCEEEC
Confidence            9999977777777777765 55555543332   234466665543  4555443

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.41  E-value=0.039  Score=49.68  Aligned_cols=78  Identities=21%  Similarity=0.321  Sum_probs=50.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe-eeCCCCCCCchHHHHHHHhcC-CCCccEE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD-FINPDDEPNKSISELVKEMTH-GTGVDYG  272 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~~~~~~~-~~g~d~v  272 (332)
                      .+++++|+|+ |.+|..+++.+...|+ +|++++++.++.+..  .+... ..|..+  .+++.+.+.+... -..+|++
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~--~~~~~~~~D~~d--~~~~~~~~~~~~~~~g~~d~l   77 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPI--PGVELLELDVTD--DASVQAAVDEVIARAGRIDVL   77 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccc--CCCeeEEeecCC--HHHHHHHHHHHHHhCCCCCEE
Confidence            3568999998 9999999999988998 899999876554322  12221 123322  3444444433211 1258999


Q ss_pred             EEcCCC
Q 043260          273 FECTGV  278 (332)
Q Consensus       273 id~~g~  278 (332)
                      |++.|.
T Consensus        78 i~~ag~   83 (270)
T PRK06179         78 VNNAGV   83 (270)
T ss_pred             EECCCC
Confidence            999984

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=95.41  E-value=0.1  Score=46.51  Aligned_cols=82  Identities=20%  Similarity=0.217  Sum_probs=49.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHHcCCCe-eeCCCCCCCchHHHHHHHhcC-CCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR--KDKGEAFGMTD-FINPDDEPNKSISELVKEMTH-GTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~--~~~~~~lga~~-v~~~~~~~~~~~~~~~~~~~~-~~g~d  270 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|+.++++...  .+.+++++.+. .+..+-.+.++..+.+.+... -...|
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D   87 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHID   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4678999998 9999999999999999 88888765422  22334444321 121111122334333333211 12589


Q ss_pred             EEEEcCCC
Q 043260          271 YGFECTGV  278 (332)
Q Consensus       271 ~vid~~g~  278 (332)
                      ++|+++|.
T Consensus        88 ~li~~Ag~   95 (253)
T PRK08993         88 ILVNNAGL   95 (253)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.41  E-value=0.12  Score=46.47  Aligned_cols=93  Identities=18%  Similarity=0.197  Sum_probs=61.5

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc----CCC---eeeCCCCCCCchHHHHHHHhcCCC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF----GMT---DFINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l----ga~---~v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      .++.+||-+|+|. |..+..+++. |. +|+++|.+++.++.+++.    |..   .++..+      .. .+....+ .
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d------~~-~l~~~~~-~  111 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCA------AQ-DIAQHLE-T  111 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcC------HH-HHhhhcC-C
Confidence            4567899899876 7777777774 76 999999999888776553    321   122211      11 1222222 3


Q ss_pred             CccEEEEcCC-----C-hHHHHHHHHHhccCCcEEEEE
Q 043260          268 GVDYGFECTG-----V-ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       268 g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      .||+|+....     . ...+..+.+.|+|+ |.++++
T Consensus       112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~Lkpg-G~l~i~  148 (255)
T PRK11036        112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPG-GALSLM  148 (255)
T ss_pred             CCCEEEehhHHHhhCCHHHHHHHHHHHcCCC-eEEEEE
Confidence            7999996432     2 24578999999998 998765

>PRK08251 short chain dehydrogenase; Provisional

Probab=95.40  E-value=0.11  Score=46.00  Aligned_cols=78  Identities=17%  Similarity=0.264  Sum_probs=50.4

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----c--CCC-eee--CCCCCCCchHHHHHHHhcC-
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----F--GMT-DFI--NPDDEPNKSISELVKEMTH-  265 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----l--ga~-~v~--~~~~~~~~~~~~~~~~~~~-  265 (332)
                      ++++||+|+ |++|...++.+...|. +|+++++++++.+.+.+    .  +.. .++  |..+  .+++.+.+.+... 
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   78 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVND--HDQVFEVFAEFRDE   78 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            568999998 9999998888888898 89999998877654321    1  221 222  3332  2334333333211 


Q ss_pred             CCCccEEEEcCC
Q 043260          266 GTGVDYGFECTG  277 (332)
Q Consensus       266 ~~g~d~vid~~g  277 (332)
                      -.+.|++|.+.|
T Consensus        79 ~~~id~vi~~ag   90 (248)
T PRK08251         79 LGGLDRVIVNAG   90 (248)
T ss_pred             cCCCCEEEECCC
Confidence            125899999987

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=95.40  E-value=0.24  Score=42.13  Aligned_cols=98  Identities=17%  Similarity=0.229  Sum_probs=64.0

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCe--eeCCCCCCCchHHHHHHHh
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTD--FINPDDEPNKSISELVKEM  263 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~~~~~  263 (332)
                      ....+.++++||=+|+|. |..+..+++.....+|+++|.+++..+.+++    .+...  ++..+      ...   .+
T Consensus        25 ~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d------~~~---~~   94 (187)
T PRK08287         25 SKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE------API---EL   94 (187)
T ss_pred             HhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC------chh---hc
Confidence            445677899999999865 6666677776543489999999987766643    34322  22221      111   11


Q ss_pred             cCCCCccEEEEcCCC---hHHHHHHHHHhccCCcEEEEEc
Q 043260          264 THGTGVDYGFECTGV---ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       264 ~~~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                       . ..+|+|+.....   ...+..+.+.|+++ |++++..
T Consensus        95 -~-~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~lv~~~  131 (187)
T PRK08287         95 -P-GKADAIFIGGSGGNLTAIIDWSLAHLHPG-GRLVLTF  131 (187)
T ss_pred             -C-cCCCEEEECCCccCHHHHHHHHHHhcCCC-eEEEEEE
Confidence             1 269999975431   23667889999998 9988754

>PLN02256 arogenate dehydrogenase

Probab=95.38  E-value=0.3  Score=45.26  Aligned_cols=96  Identities=14%  Similarity=0.233  Sum_probs=61.3

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      +...-..+.+|.|+|.|.+|...+..++..|. +|+++++++. .+.++++|...   .     .+..+.+    . ..+
T Consensus        29 ~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv~~---~-----~~~~e~~----~-~~a   93 (304)
T PLN02256         29 EELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGVSF---F-----RDPDDFC----E-EHP   93 (304)
T ss_pred             HhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCCee---e-----CCHHHHh----h-CCC
Confidence            44444566789999999999999998888887 8999988864 35566677532   1     1121111    1 146


Q ss_pred             cEEEEcCCChHHHHHHHHH-----hccCCcEEEEEcCC
Q 043260          270 DYGFECTGVASLISEALEA-----TKLGKGKVMAIGAA  302 (332)
Q Consensus       270 d~vid~~g~~~~~~~~~~~-----l~~~~G~~v~~G~~  302 (332)
                      |+||-|+... .+...++-     ++++ ..++.+++.
T Consensus        94 DvVilavp~~-~~~~vl~~l~~~~l~~~-~iviDv~Sv  129 (304)
T PLN02256         94 DVVLLCTSIL-STEAVLRSLPLQRLKRS-TLFVDVLSV  129 (304)
T ss_pred             CEEEEecCHH-HHHHHHHhhhhhccCCC-CEEEecCCc
Confidence            8888888764 33333332     3454 666777763

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=95.37  E-value=0.088  Score=46.95  Aligned_cols=79  Identities=15%  Similarity=0.151  Sum_probs=49.6

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH----cCCC--eee--CCCCCCCchHHHHHHHhcC-
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA----FGMT--DFI--NPDDEPNKSISELVKEMTH-  265 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~----lga~--~v~--~~~~~~~~~~~~~~~~~~~-  265 (332)
                      ++++||+|+ |.+|..++..+...|+ +|++++++..+.+.. .+    .+..  ..+  |..+  .++....+.+... 
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~   78 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS--EQSVLALSRGVDEI   78 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC--HHHHHHHHHHHHHH
Confidence            568999998 9999999999988998 899999887655432 12    2311  122  2222  2333333332211 


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      -...|++|++.|.
T Consensus        79 ~~~id~vv~~ag~   91 (259)
T PRK12384         79 FGRVDLLVYNAGI   91 (259)
T ss_pred             cCCCCEEEECCCc
Confidence            0258999998873

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.37  E-value=0.078  Score=47.19  Aligned_cols=76  Identities=20%  Similarity=0.271  Sum_probs=49.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC-eee--CCCCCCCchHHHHHHHhcC-CCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT-DFI--NPDDEPNKSISELVKEMTH-GTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~-~v~--~~~~~~~~~~~~~~~~~~~-~~g~d  270 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++    +..+.. ..+  |..+  .+++.+.+.+... -..+|
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~----~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id   77 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE----TVDGRPAEFHAADVRD--PDQVAALVDAIVERHGRLD   77 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh----hhcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCCC
Confidence            5789999998 9999999999999999 89999887654    122221 122  3222  2333333332211 12589


Q ss_pred             EEEEcCCC
Q 043260          271 YGFECTGV  278 (332)
Q Consensus       271 ~vid~~g~  278 (332)
                      ++|.+.|.
T Consensus        78 ~vi~~ag~   85 (252)
T PRK07856         78 VLVNNAGG   85 (252)
T ss_pred             EEEECCCC
Confidence            99999873

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.37  E-value=0.16  Score=46.69  Aligned_cols=94  Identities=14%  Similarity=0.191  Sum_probs=65.8

Q ss_pred             hcccchhhhHHHHHHhhCC-CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHHHHcCCCeeeCCCCCC
Q 043260          176 FLSCGYSSGFGAAWKEFKV-EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGID-KNPCRKDKGEAFGMTDFINPDDEP  252 (332)
Q Consensus       176 ~l~~~~~ta~~al~~~~~~-~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~-~~~~~~~~~~~lga~~v~~~~~~~  252 (332)
                      .+||+....+..+ +.-.+ -.|++|+|+|. +.+|.-++.++...|+ +|+++. ++.                     
T Consensus       137 ~~PcTp~ai~~ll-~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~---------------------  193 (296)
T PRK14188        137 LVPCTPLGCMMLL-RRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR---------------------  193 (296)
T ss_pred             CcCCCHHHHHHHH-HHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC---------------------
Confidence            3555544444433 44343 57999999995 9999999999999998 899884 322                     


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                        ++    .+.+  +.+|+|+-++|.+..+...+  ++++ ..++.+|...
T Consensus       194 --~l----~e~~--~~ADIVIsavg~~~~v~~~~--lk~G-avVIDvGin~  233 (296)
T PRK14188        194 --DL----PAVC--RRADILVAAVGRPEMVKGDW--IKPG-ATVIDVGINR  233 (296)
T ss_pred             --CH----HHHH--hcCCEEEEecCChhhcchhe--ecCC-CEEEEcCCcc
Confidence              11    1111  14899999999987666554  8887 8999999754

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.36  E-value=0.1  Score=46.06  Aligned_cols=75  Identities=19%  Similarity=0.253  Sum_probs=54.0

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH--HcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE--AFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~--~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      ++++|+|+|.+|...++.+...|. .|++++.++++.+...  ++.. +++..+.    .-.+.+++. +-..+|+++-+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~-~~v~gd~----t~~~~L~~a-gi~~aD~vva~   73 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDT-HVVIGDA----TDEDVLEEA-GIDDADAVVAA   73 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcce-EEEEecC----CCHHHHHhc-CCCcCCEEEEe
Confidence            368899999999999999999998 9999999999877632  3544 3333322    112234443 34479999999


Q ss_pred             CCCh
Q 043260          276 TGVA  279 (332)
Q Consensus       276 ~g~~  279 (332)
                      +++.
T Consensus        74 t~~d   77 (225)
T COG0569          74 TGND   77 (225)
T ss_pred             eCCC
Confidence            9984

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=95.36  E-value=0.14  Score=44.78  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=68.8

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCeeeC-------CCCCCCchHHHHHHHhcC
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDFIN-------PDDEPNKSISELVKEMTH  265 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v~~-------~~~~~~~~~~~~~~~~~~  265 (332)
                      ..++.+||+.|+|. |.-++.+|. .|. +|+++|.++.-.+.+ ++.+......       +......-....+.++..
T Consensus        32 ~~~~~rvLd~GCG~-G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        32 LPAGARVFVPLCGK-SLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCCeEEEeCCCc-hhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence            35778999999977 777777775 799 999999999887764 3333211000       000000000001111110


Q ss_pred             --CCCccEEEEcCCC--------hHHHHHHHHHhccCCcEEEEEcCCC------CCcccCChHhHh
Q 043260          266 --GTGVDYGFECTGV--------ASLISEALEATKLGKGKVMAIGAAN------EAKVPLNFPAIA  315 (332)
Q Consensus       266 --~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~G~~~------~~~~~~~~~~~~  315 (332)
                        ...||.|+|+..-        ...+..+.+.|+|+ |++++++...      +.+..++..++.
T Consensus       109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg-G~~ll~~~~~~~~~~~gpp~~~~~~eL~  173 (213)
T TIGR03840       109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG-ARQLLITLDYDQSEMAGPPFSVSPAEVE  173 (213)
T ss_pred             ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC-CeEEEEEEEcCCCCCCCcCCCCCHHHHH
Confidence              1258999997541        23577999999998 9866664322      123346666654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK07411 hypothetical protein; Validated

Probab=95.34  E-value=0.051  Score=52.14  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=31.5

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ..+|+|+|+|++|-.+++.+..+|.++++++|.+.
T Consensus        38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            46799999999999999999999999999998653

>PRK08303 short chain dehydrogenase; Provisional

Probab=95.34  E-value=0.098  Score=48.39  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=30.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      .|+++||+|+ +++|.++++.+...|+ +|++++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            4788999998 9999999999999999 89998886

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.33  E-value=0.1  Score=46.64  Aligned_cols=79  Identities=24%  Similarity=0.227  Sum_probs=50.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHHcCCC-eee--CCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK----GEAFGMT-DFI--NPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~----~~~lga~-~v~--~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      .++++||+|+ |++|...++.+...|+ +|++++++ ++.+.    ..+.+.+ .++  |..+  .++..+.+.+... -
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   89 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTK--PESAEKVVKEALEEF   89 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            5789999998 9999999999999999 89988877 33322    2233433 222  3322  2333333333211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ..+|++|.+.|.
T Consensus        90 g~id~li~~ag~  101 (258)
T PRK06935         90 GKIDILVNNAGT  101 (258)
T ss_pred             CCCCEEEECCCC
Confidence            158999998874

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.33  E-value=0.096  Score=47.09  Aligned_cols=82  Identities=18%  Similarity=0.267  Sum_probs=49.6

Q ss_pred             CCCEEEEECC---ChHHHHHHHHHHHcCCCeEEEEcCC---cchHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCC-C
Q 043260          196 KGSSVAVFGL---GAVGLGVMDRARIQGAAKIIGIDKN---PCRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHG-T  267 (332)
Q Consensus       196 ~g~~vlV~G~---g~vG~~~~~la~~~G~~~Vi~~~~~---~~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~-~  267 (332)
                      .++++||+|+   +++|.++++.+...|+ +|+++.+.   +++++ +.++++....+..+-.+.++..+.+.+.... .
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD   83 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence            5788999984   6899999999888999 88887543   23333 2234453322222211234444444433211 2


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      .+|++|++.|.
T Consensus        84 ~iD~lvnnAG~   94 (260)
T PRK06997         84 GLDGLVHSIGF   94 (260)
T ss_pred             CCcEEEEcccc
Confidence            68999998864

>PRK06181 short chain dehydrogenase; Provisional

Probab=95.33  E-value=0.095  Score=46.85  Aligned_cols=79  Identities=19%  Similarity=0.285  Sum_probs=50.4

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHHhcC-CC
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKEMTH-GT  267 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~~~~-~~  267 (332)
                      +.++||+|+ |.+|..+++.+...|. +|+++++++++.+.+    +..+... ++  |..+  .+++.+.+.+... -.
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSD--AEACERLIEAAVARFG   77 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHcC
Confidence            357999998 9999999999989998 999999987664432    2234322 22  2222  2333333333211 12


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|+||.++|.
T Consensus        78 ~id~vi~~ag~   88 (263)
T PRK06181         78 GIDILVNNAGI   88 (263)
T ss_pred             CCCEEEECCCc
Confidence            58999999874

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=95.31  E-value=0.15  Score=46.17  Aligned_cols=104  Identities=15%  Similarity=0.127  Sum_probs=67.4

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC--CeeeCCCCCCCchHHHHHHHhcCC
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM--TDFINPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga--~~v~~~~~~~~~~~~~~~~~~~~~  266 (332)
                      ....++.++.+||=+|+|. |..+..+++..++ +|+.++.+++-.+.+++.-.  +.+. ...   .++.   ..-...
T Consensus        45 l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i~-~~~---~D~~---~~~~~~  115 (263)
T PTZ00098         45 LSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKIE-FEA---NDIL---KKDFPE  115 (263)
T ss_pred             HHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCceE-EEE---CCcc---cCCCCC
Confidence            3556889999999999865 5556677777787 99999999888777766322  1111 000   1110   111123


Q ss_pred             CCccEEEEcC-----C--C-hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          267 TGVDYGFECT-----G--V-ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       267 ~g~d~vid~~-----g--~-~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ..||+|+..-     +  . ...+..+.+.|+|+ |++++....
T Consensus       116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG-G~lvi~d~~  158 (263)
T PTZ00098        116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN-GILLITDYC  158 (263)
T ss_pred             CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC-cEEEEEEec
Confidence            3699999631     1  1 24578889999998 999987543

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.31  E-value=0.083  Score=47.13  Aligned_cols=80  Identities=21%  Similarity=0.328  Sum_probs=52.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCC-eee--CCCCCCCchHHHHHHHhcC-CCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMT-DFI--NPDDEPNKSISELVKEMTH-GTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~-~v~--~~~~~~~~~~~~~~~~~~~-~~g~  269 (332)
                      .++++||+|+ |.+|..+++.+...|. +|++++++.++.+.+ .+++.. ..+  |..+  .++..+.+.+... -...
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i   81 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTR--QDSIDRIVAAAVERFGGI   81 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999998 9999999999999999 899999988876544 334322 122  2222  2333333333211 1258


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|.+.+.
T Consensus        82 d~li~~ag~   90 (257)
T PRK07067         82 DILFNNAAL   90 (257)
T ss_pred             CEEEECCCc
Confidence            999998763

>PLN02244 tocopherol O-methyltransferase

Probab=95.31  E-value=0.056  Score=50.90  Aligned_cols=95  Identities=19%  Similarity=0.299  Sum_probs=63.7

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC---eeeCCCCCCCchHHHHHHHhcCCC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT---DFINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      +++++||=+|+|. |..+..+++..|+ +|+++|.++...+.+++    .|..   .++..+.   .+    + .. ...
T Consensus       117 ~~~~~VLDiGCG~-G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~---~~----~-~~-~~~  185 (340)
T PLN02244        117 KRPKRIVDVGCGI-GGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA---LN----Q-PF-EDG  185 (340)
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc---cc----C-CC-CCC
Confidence            7889999999876 6677788887788 99999999987765544    2332   1221111   11    0 11 223


Q ss_pred             CccEEEEcCCC------hHHHHHHHHHhccCCcEEEEEcC
Q 043260          268 GVDYGFECTGV------ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       268 g~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      .||+|+.....      ...+.++.+.|+++ |++++...
T Consensus       186 ~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpG-G~lvi~~~  224 (340)
T PLN02244        186 QFDLVWSMESGEHMPDKRKFVQELARVAAPG-GRIIIVTW  224 (340)
T ss_pred             CccEEEECCchhccCCHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            69999874332      23678899999998 99988653

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=95.30  E-value=0.26  Score=45.11  Aligned_cols=88  Identities=18%  Similarity=0.350  Sum_probs=57.5

Q ss_pred             EEEEECCChHHHHH-HHHHHHcCCCeEEE-EcCCcch--HHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          199 SVAVFGLGAVGLGV-MDRARIQGAAKIIG-IDKNPCR--KDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       199 ~vlV~G~g~vG~~~-~~la~~~G~~~Vi~-~~~~~~~--~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      ++.|+|+|.+|... ..+.+..++ ++.. ++.++++  ++.++++|......       ++...+.    ...+|+|++
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~-elvaV~d~d~es~~la~A~~~Gi~~~~~-------~~e~ll~----~~dIDaV~i   70 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHL-EMVAMVGIDPESDGLARARELGVKTSAE-------GVDGLLA----NPDIDIVFD   70 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCc-EEEEEEeCCcccHHHHHHHHCCCCEEEC-------CHHHHhc----CCCCCEEEE
Confidence            68899999999865 455554466 5554 5555554  45678888654432       2222222    236999999


Q ss_pred             cCCChHHHHHHHHHhccCCcEEEEE
Q 043260          275 CTGVASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       275 ~~g~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      ++++..+...+.+++..+ -.++..
T Consensus        71 aTp~~~H~e~a~~al~aG-k~VIde   94 (285)
T TIGR03215        71 ATSAKAHARHARLLAELG-KIVIDL   94 (285)
T ss_pred             CCCcHHHHHHHHHHHHcC-CEEEEC
Confidence            999987878888887765 444433

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=95.30  E-value=0.29  Score=42.97  Aligned_cols=106  Identities=15%  Similarity=0.188  Sum_probs=70.6

Q ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhcC
Q 043260          191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      .++....+++|=+|.+. |..++.+|..+. -.+++.+++++++.+.+++    .|.+..+....  ..+..+.+.+...
T Consensus        54 L~~~~~~k~iLEiGT~~-GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~--~gdal~~l~~~~~  130 (219)
T COG4122          54 LARLSGPKRILEIGTAI-GYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL--GGDALDVLSRLLD  130 (219)
T ss_pred             HHHhcCCceEEEeeccc-CHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe--cCcHHHHHHhccC
Confidence            45566778888888744 777888888776 4589999999999887654    57654221111  0133444444222


Q ss_pred             CCCccEEEEcCC---ChHHHHHHHHHhccCCcEEEEEcC
Q 043260          266 GTGVDYGFECTG---VASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       266 ~~g~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      + .||+||--..   -+..++.+++.|+++ |.++.=-.
T Consensus       131 ~-~fDliFIDadK~~yp~~le~~~~lLr~G-Gliv~DNv  167 (219)
T COG4122         131 G-SFDLVFIDADKADYPEYLERALPLLRPG-GLIVADNV  167 (219)
T ss_pred             C-CccEEEEeCChhhCHHHHHHHHHHhCCC-cEEEEeec
Confidence            3 7999986443   245789999999998 88775443

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.30  E-value=0.062  Score=51.19  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=31.8

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ...+|+|+|+|++|..++..+...|..+++++|.+
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45679999999999999999999999999999976

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.28  E-value=0.066  Score=47.28  Aligned_cols=82  Identities=20%  Similarity=0.157  Sum_probs=50.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHHcCCC-eeeCCCCCCCchHHHHHHHhcC-CCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK----GEAFGMT-DFINPDDEPNKSISELVKEMTH-GTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~----~~~lga~-~v~~~~~~~~~~~~~~~~~~~~-~~g  268 (332)
                      .++++||+|+ |.+|..++..+...|. +|++++++.++.+.    +++.+.. .++..+-.+.+++.+.+.+... -..
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR   83 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            4678999998 9999999998888998 89999998665432    2233332 1221111112333333332211 115


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|.||.+.+.
T Consensus        84 ~d~vi~~ag~   93 (251)
T PRK12826         84 LDILVANAGI   93 (251)
T ss_pred             CCEEEECCCC
Confidence            8999998864

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.25  E-value=0.67  Score=34.56  Aligned_cols=85  Identities=16%  Similarity=0.270  Sum_probs=54.9

Q ss_pred             EEEEECCChHHHHHHHHHHHcC---CCeEEEE-cCCcchHHHH-HHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          199 SVAVFGLGAVGLGVMDRARIQG---AAKIIGI-DKNPCRKDKG-EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G---~~~Vi~~-~~~~~~~~~~-~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      ++.|+|+|.+|.+.+.-+...|   . +|+++ ++++++.+.+ ++++.....       .+..+.++      ..|+||
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~------~advvi   66 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQATA-------DDNEEAAQ------EADVVI   66 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTEEES-------EEHHHHHH------HTSEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcccccc-------CChHHhhc------cCCEEE
Confidence            5778899999999999999888   6 88855 9999888755 566643332       12333332      379999


Q ss_pred             EcCCChHHHHHHHH---HhccCCcEEEEE
Q 043260          274 ECTGVASLISEALE---ATKLGKGKVMAI  299 (332)
Q Consensus       274 d~~g~~~~~~~~~~---~l~~~~G~~v~~  299 (332)
                      -|+.-. .+...++   ...++ ..++.+
T Consensus        67 lav~p~-~~~~v~~~i~~~~~~-~~vis~   93 (96)
T PF03807_consen   67 LAVKPQ-QLPEVLSEIPHLLKG-KLVISI   93 (96)
T ss_dssp             E-S-GG-GHHHHHHHHHHHHTT-SEEEEE
T ss_pred             EEECHH-HHHHHHHHHhhccCC-CEEEEe
Confidence            999875 3333333   34444 555554

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.25  E-value=0.18  Score=46.77  Aligned_cols=89  Identities=20%  Similarity=0.180  Sum_probs=62.0

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      .-.|++|.|+|-|.+|.+.++.++.+|. +|++.++.....+.+++.|+. +.        ++.+.+      ...|+|+
T Consensus        13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~~-v~--------sl~Eaa------k~ADVV~   76 (335)
T PRK13403         13 LLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGFE-VM--------SVSEAV------RTAQVVQ   76 (335)
T ss_pred             hhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCCE-EC--------CHHHHH------hcCCEEE
Confidence            3478999999999999999999999999 898887665555666777762 21        122222      1479999


Q ss_pred             EcCCChHH---H-HHHHHHhccCCcEEEEE
Q 043260          274 ECTGVASL---I-SEALEATKLGKGKVMAI  299 (332)
Q Consensus       274 d~~g~~~~---~-~~~~~~l~~~~G~~v~~  299 (332)
                      -++.++..   + ...+..++++ ..+++.
T Consensus        77 llLPd~~t~~V~~~eil~~MK~G-aiL~f~  105 (335)
T PRK13403         77 MLLPDEQQAHVYKAEVEENLREG-QMLLFS  105 (335)
T ss_pred             EeCCChHHHHHHHHHHHhcCCCC-CEEEEC
Confidence            99886432   3 3456677775 544443

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=95.24  E-value=0.3  Score=40.62  Aligned_cols=87  Identities=24%  Similarity=0.239  Sum_probs=57.3

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC-RKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~-~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      ++++|.|+|-|.-|++.++-++..|. +|++..+... ..+.+++.|.. +        .+..++++      ..|+|+-
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~-~V~Vglr~~s~s~~~A~~~Gf~-v--------~~~~eAv~------~aDvV~~   66 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGV-NVIVGLREGSASWEKAKADGFE-V--------MSVAEAVK------KADVVML   66 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC--EEEEEE-TTCHHHHHHHHTT-E-C--------CEHHHHHH------C-SEEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCC-CEEEEecCCCcCHHHHHHCCCe-e--------ccHHHHHh------hCCEEEE
Confidence            57899999999999999999999999 8988877776 77889998873 2        33444443      4799999


Q ss_pred             cCCCh---HHH-HHHHHHhccCCcEEEEE
Q 043260          275 CTGVA---SLI-SEALEATKLGKGKVMAI  299 (332)
Q Consensus       275 ~~g~~---~~~-~~~~~~l~~~~G~~v~~  299 (332)
                      .+.+.   +.+ ++....|+++ -++++.
T Consensus        67 L~PD~~q~~vy~~~I~p~l~~G-~~L~fa   94 (165)
T PF07991_consen   67 LLPDEVQPEVYEEEIAPNLKPG-ATLVFA   94 (165)
T ss_dssp             -S-HHHHHHHHHHHHHHHS-TT--EEEES
T ss_pred             eCChHHHHHHHHHHHHhhCCCC-CEEEeC
Confidence            99874   233 3445577775 444443

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.24  E-value=0.073  Score=47.61  Aligned_cols=80  Identities=20%  Similarity=0.278  Sum_probs=50.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH---cCCCe-e--eCCCCCCCchHHHHHHHhcC-CC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA---FGMTD-F--INPDDEPNKSISELVKEMTH-GT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~---lga~~-v--~~~~~~~~~~~~~~~~~~~~-~~  267 (332)
                      ++++++|+|+ |.+|..+++.+...|+ +|++++++++..+..++   .+... .  .|..+  ..+..+.+.+... -.
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRD--PASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            4688999998 9999999999999999 89999988754443332   23321 2  22322  2223222222211 12


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ..|++|.+.|.
T Consensus        82 ~id~vi~~ag~   92 (263)
T PRK08226         82 RIDILVNNAGV   92 (263)
T ss_pred             CCCEEEECCCc
Confidence            58999998883

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.24  E-value=0.22  Score=46.48  Aligned_cols=95  Identities=18%  Similarity=0.138  Sum_probs=64.1

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee------eCCCCCCCchHHHHHHHhcCCCCccE
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF------INPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v------~~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      .+|.|+|+|.+|.+.+..+...|. +|.+.++++++.+.+.+.+....      +...-....+..+.+      ..+|+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~------~~aD~   77 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL------AGADF   77 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH------cCCCE
Confidence            579999999999999999988998 89999998888776665421100      000000001222222      25899


Q ss_pred             EEEcCCChHHHHHHHHHhccCCcEEEEEcC
Q 043260          272 GFECTGVASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       272 vid~~g~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      ||-++.+. .+..+++.++++ -.++.+..
T Consensus        78 Vi~~v~~~-~~~~v~~~l~~~-~~vi~~~~  105 (328)
T PRK14618         78 AVVAVPSK-ALRETLAGLPRA-LGYVSCAK  105 (328)
T ss_pred             EEEECchH-HHHHHHHhcCcC-CEEEEEee
Confidence            99999996 567888888876 66666644

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.24  E-value=0.24  Score=42.79  Aligned_cols=34  Identities=24%  Similarity=0.437  Sum_probs=30.5

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ..+|+|+|+|++|...+..+...|.++++++|.+
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            4779999999999999999999999899999854

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=95.23  E-value=0.31  Score=42.20  Aligned_cols=99  Identities=16%  Similarity=0.168  Sum_probs=65.9

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCe--eeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTD--FINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      ++++||-+|+|. |..+..+++.....+|+.+|.+++..+.+++    .+...  ++.      .+..+.+........+
T Consensus        40 ~~~~VLDiGcGt-G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~------~d~~~~l~~~~~~~~~  112 (202)
T PRK00121         40 DAPIHLEIGFGK-GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLC------GDAVEVLLDMFPDGSL  112 (202)
T ss_pred             CCCeEEEEccCC-CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEe------cCHHHHHHHHcCcccc
Confidence            678899999977 7777788877644489999999988876643    23322  222      2221233322333368


Q ss_pred             cEEEEcCCC--------------hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          270 DYGFECTGV--------------ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       270 d~vid~~g~--------------~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      |.|+-....              ...+..+.+.|+++ |.+++.-..
T Consensus       113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~l~i~~~~  158 (202)
T PRK00121        113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG-GEIHFATDW  158 (202)
T ss_pred             ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCC-CEEEEEcCC
Confidence            999865432              34688999999998 999887543

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.23  E-value=0.18  Score=46.38  Aligned_cols=95  Identities=17%  Similarity=0.189  Sum_probs=67.0

Q ss_pred             hcccchhhhHHHHHHhhCC-CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          176 FLSCGYSSGFGAAWKEFKV-EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       176 ~l~~~~~ta~~al~~~~~~-~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      .+||+....+. +.+..++ -.|++|+|+|. +.+|.-.+.++...|+ +|+++.+...                     
T Consensus       138 ~~PcTp~aii~-lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~---------------------  194 (301)
T PRK14194        138 LTPCTPSGCLR-LLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRST---------------------  194 (301)
T ss_pred             CCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCC---------------------
Confidence            34555444444 3344444 47999999999 5999999999999999 9999854422                     


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                       +..+.+      +.+|+||-++|.+..+...+  ++++ ..++.+|...
T Consensus       195 -~l~e~~------~~ADIVIsavg~~~~v~~~~--ik~G-aiVIDvgin~  234 (301)
T PRK14194        195 -DAKALC------RQADIVVAAVGRPRLIDADW--LKPG-AVVIDVGINR  234 (301)
T ss_pred             -CHHHHH------hcCCEEEEecCChhcccHhh--ccCC-cEEEEecccc
Confidence             122222      24899999999986666554  8887 8999999553

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=95.23  E-value=0.26  Score=45.65  Aligned_cols=38  Identities=16%  Similarity=0.193  Sum_probs=31.1

Q ss_pred             CCCCEEEEECC---ChHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 043260          195 EKGSSVAVFGL---GAVGLGVMDRARIQGAAKIIGIDKNPCRK  234 (332)
Q Consensus       195 ~~g~~vlV~G~---g~vG~~~~~la~~~G~~~Vi~~~~~~~~~  234 (332)
                      -.|+++||+|+   .++|.++++.+...|+ +|++ .++..++
T Consensus         7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga-~Vv~-~~~~~~l   47 (303)
T PLN02730          7 LRGKRAFIAGVADDNGYGWAIAKALAAAGA-EILV-GTWVPAL   47 (303)
T ss_pred             CCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEE-EeCcchh
Confidence            35889999988   8999999999999999 8888 4454444

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.23  E-value=0.12  Score=45.99  Aligned_cols=80  Identities=14%  Similarity=0.168  Sum_probs=49.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHHHHHHcCCCee-eCCCCCCCchHHHHHHHhcC-CCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP-CRKDKGEAFGMTDF-INPDDEPNKSISELVKEMTH-GTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~-~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~-~~g~d~  271 (332)
                      .+++++|+|+ |++|..+++.+...|+ +|+++.++. +..+.+++.+...+ .|..+  .++..+.+.+... -.+.|+
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVFTIKCDVGN--RDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCeEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            4688999998 9999999999999998 787765443 33344443333222 23332  2333333333211 125899


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      +|.+.|.
T Consensus        83 li~~ag~   89 (255)
T PRK06463         83 LVNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998874

>PRK06482 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.13  Score=46.34  Aligned_cols=78  Identities=17%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCC-ee--eCCCCCCCchHHHHHHHhc-CCCCccE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMT-DF--INPDDEPNKSISELVKEMT-HGTGVDY  271 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~-~v--~~~~~~~~~~~~~~~~~~~-~~~g~d~  271 (332)
                      +++||+|+ |.+|..+++.+...|. +|+++.+++++.+.+++ .+.. .+  .|..+  .+++.+.+.+.. ...++|+
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   79 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTD--SAAVRAVVDRAFAALGRIDV   79 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            57999998 9999999998888998 89999998877665543 3322 11  23322  233333333321 1125899


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      ||.++|.
T Consensus        80 vi~~ag~   86 (276)
T PRK06482         80 VVSNAGY   86 (276)
T ss_pred             EEECCCC
Confidence            9999874

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.22  E-value=0.34  Score=45.41  Aligned_cols=105  Identities=19%  Similarity=0.216  Sum_probs=68.3

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHH-cCCCeEEEEcCCcchHHHH-HHc----CCCeeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARI-QGAAKIIGIDKNPCRKDKG-EAF----GMTDFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~-~G~~~Vi~~~~~~~~~~~~-~~l----ga~~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      +...+++|+|+|..|.+.+..+.. .+.++|.+.+++.++.+.+ +++    |.. +...     +++.+.+      ..
T Consensus       130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~-v~~~-----~d~~~al------~~  197 (330)
T PRK08291        130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIP-VTVA-----RDVHEAV------AG  197 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCce-EEEe-----CCHHHHH------cc
Confidence            345689999999999987776664 5777999999998887644 333    432 2212     2233333      14


Q ss_pred             ccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHh
Q 043260          269 VDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPA  313 (332)
Q Consensus       269 ~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~  313 (332)
                      +|+|+.++++...+-. .+.++++ -++..+|......-++++.-
T Consensus       198 aDiVi~aT~s~~p~i~-~~~l~~g-~~v~~vg~d~~~~rEld~~~  240 (330)
T PRK08291        198 ADIIVTTTPSEEPILK-AEWLHPG-LHVTAMGSDAEHKNEIAPAV  240 (330)
T ss_pred             CCEEEEeeCCCCcEec-HHHcCCC-ceEEeeCCCCCCcccCCHHH
Confidence            7999999887543322 2457876 78888887654455565543

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.21  E-value=0.13  Score=45.77  Aligned_cols=80  Identities=15%  Similarity=0.229  Sum_probs=52.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCC-eee--CCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMT-DFI--NPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~-~v~--~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      ++++++|+|+ |.+|..++..+...|+ +|+++++++++.+.+    ++.+.. ..+  |..+  ..++...+.+... -
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   86 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD--EEAVAAAFARIDAEH   86 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            5789999998 9999999998888999 999999987665432    233432 122  3322  2333333333211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ..+|.+|.+.|.
T Consensus        87 ~~id~vi~~ag~   98 (256)
T PRK06124         87 GRLDILVNNVGA   98 (256)
T ss_pred             CCCCEEEECCCC
Confidence            258999998884

>PRK06914 short chain dehydrogenase; Provisional

Probab=95.21  E-value=0.12  Score=46.64  Aligned_cols=78  Identities=17%  Similarity=0.178  Sum_probs=50.2

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCC--C-eee--CCCCCCCchHHHHHHHhcC-
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGM--T-DFI--NPDDEPNKSISELVKEMTH-  265 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga--~-~v~--~~~~~~~~~~~~~~~~~~~-  265 (332)
                      ++++||+|+ |.+|...+..+...|+ +|++++++.++.+...    ..+.  . .++  |..+  .+++.+ +.+... 
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~-~~~~~~~   78 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD--QNSIHN-FQLVLKE   78 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC--HHHHHH-HHHHHHh
Confidence            567999998 9999999999888999 8999988877654332    2222  1 222  3332  233333 333211 


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      -.++|+|+.+.|.
T Consensus        79 ~~~id~vv~~ag~   91 (280)
T PRK06914         79 IGRIDLLVNNAGY   91 (280)
T ss_pred             cCCeeEEEECCcc
Confidence            1258999999874

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.18  E-value=0.16  Score=48.14  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=32.3

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ...+|+|+|+|++|..+++.+..+|.++++++|.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            447899999999999999999999999999998764

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.17  E-value=0.15  Score=46.83  Aligned_cols=38  Identities=18%  Similarity=0.359  Sum_probs=34.3

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHH
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDK  236 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~  236 (332)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~   43 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATA   43 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHH
Confidence            479999999999999999888999 99999999988765

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.15  E-value=0.082  Score=50.78  Aligned_cols=36  Identities=19%  Similarity=0.247  Sum_probs=31.7

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ...+|+|+|+|++|..++..+..+|.+++.++|.+.
T Consensus        41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            446799999999999999999999999999998643

>PRK04266 fibrillarin; Provisional

Probab=95.13  E-value=0.31  Score=43.11  Aligned_cols=101  Identities=21%  Similarity=0.175  Sum_probs=62.6

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhcC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      +...+++|++||=+|+|. |..+..+++..+..+|++++.+++.++.+.+    ...-..+..+.   .+. .....+. 
T Consensus        66 ~~l~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~---~~~-~~~~~l~-  139 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADA---RKP-ERYAHVV-  139 (226)
T ss_pred             hhCCCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCC---CCc-chhhhcc-
Confidence            346889999999998865 5556666776653489999999977664422    21112222221   110 0001111 


Q ss_pred             CCCccEEEEcCCChH----HHHHHHHHhccCCcEEEE
Q 043260          266 GTGVDYGFECTGVAS----LISEALEATKLGKGKVMA  298 (332)
Q Consensus       266 ~~g~d~vid~~g~~~----~~~~~~~~l~~~~G~~v~  298 (332)
                      . .+|+|+.....+.    .+..+.+.|+++ |++++
T Consensus       140 ~-~~D~i~~d~~~p~~~~~~L~~~~r~LKpG-G~lvI  174 (226)
T PRK04266        140 E-KVDVIYQDVAQPNQAEIAIDNAEFFLKDG-GYLLL  174 (226)
T ss_pred             c-cCCEEEECCCChhHHHHHHHHHHHhcCCC-cEEEE
Confidence            2 4999996555432    367888899998 99988

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.13  E-value=0.16  Score=44.95  Aligned_cols=85  Identities=16%  Similarity=0.167  Sum_probs=53.0

Q ss_pred             CCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe--ee--CCCCCCCchHHHHHHHh
Q 043260          193 KVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD--FI--NPDDEPNKSISELVKEM  263 (332)
Q Consensus       193 ~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~--v~--~~~~~~~~~~~~~~~~~  263 (332)
                      +..++++++|+|+ |.+|...++.+...|+ +|++++++.++.+.+    ++.+...  ++  +.......++.+.+..+
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   86 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTI   86 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHH
Confidence            3457889999998 9999999998888998 999999987665332    3333321  22  22210113333333222


Q ss_pred             cC-CCCccEEEEcCCC
Q 043260          264 TH-GTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~-~~g~d~vid~~g~  278 (332)
                      .. ...+|.||.+++.
T Consensus        87 ~~~~~~id~vi~~Ag~  102 (247)
T PRK08945         87 EEQFGRLDGVLHNAGL  102 (247)
T ss_pred             HHHhCCCCEEEECCcc
Confidence            11 1258999998764

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=95.13  E-value=0.24  Score=45.74  Aligned_cols=89  Identities=16%  Similarity=0.256  Sum_probs=56.7

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~  278 (332)
                      +|.|+|.|.+|...+.-+...|. +|++.++++++.+.+.+.|....        .+..+....+   ...|+||-++..
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~~~~--------~s~~~~~~~~---~~~dvIi~~vp~   69 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRTTGV--------ANLRELSQRL---SAPRVVWVMVPH   69 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCccc--------CCHHHHHhhc---CCCCEEEEEcCc
Confidence            58899999999988888888898 99999999999888877664322        1111111111   146777777776


Q ss_pred             hHHHHH----HHHHhccCCcEEEEEcC
Q 043260          279 ASLISE----ALEATKLGKGKVMAIGA  301 (332)
Q Consensus       279 ~~~~~~----~~~~l~~~~G~~v~~G~  301 (332)
                      . .+..    ....+.++ -.++..+.
T Consensus        70 ~-~~~~v~~~l~~~l~~g-~ivid~st   94 (298)
T TIGR00872        70 G-IVDAVLEELAPTLEKG-DIVIDGGN   94 (298)
T ss_pred             h-HHHHHHHHHHhhCCCC-CEEEECCC
Confidence            4 3333    33334443 44555443

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK14982 acyl-ACP reductase; Provisional

Probab=95.10  E-value=0.12  Score=48.51  Aligned_cols=95  Identities=18%  Similarity=0.165  Sum_probs=64.5

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHH-cCCCeEEEEcCCcchHHHH-HHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccE
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARI-QGAAKIIGIDKNPCRKDKG-EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~-~G~~~Vi~~~~~~~~~~~~-~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      -.+++|+|+|+ |.+|..+++.+.. .|.++++++.++.++.+.+ ++++...+        .+    +.+...  .+|+
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i--------~~----l~~~l~--~aDi  218 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKI--------LS----LEEALP--EADI  218 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccH--------Hh----HHHHHc--cCCE
Confidence            46789999999 9999998888864 5767999999988777654 34431111        11    222222  4899


Q ss_pred             EEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          272 GFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       272 vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      |+.+++.+..+..-.+.+++. -.++.++.+.+
T Consensus       219 Vv~~ts~~~~~~I~~~~l~~~-~~viDiAvPRD  250 (340)
T PRK14982        219 VVWVASMPKGVEIDPETLKKP-CLMIDGGYPKN  250 (340)
T ss_pred             EEECCcCCcCCcCCHHHhCCC-eEEEEecCCCC
Confidence            999998754432222455776 78889998876

>PRK07102 short chain dehydrogenase; Provisional

Probab=95.09  E-value=0.17  Score=44.70  Aligned_cols=76  Identities=13%  Similarity=0.164  Sum_probs=49.2

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH---cCCC--eee--CCCCCCCchHHHHHHHhcCCCC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA---FGMT--DFI--NPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~---lga~--~v~--~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ++++|+|+ |++|...++.+...|. +|+++++++++.+.. ++   .+..  .++  |..+  ..+..+.+.+.. . .
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~-~-~   76 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILD--TASHAAFLDSLP-A-L   76 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC--hHHHHHHHHHHh-h-c
Confidence            47899998 9999999999999998 899999988766432 22   1211  222  2222  233333333332 2 4


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|+++.++|.
T Consensus        77 ~d~vv~~ag~   86 (243)
T PRK07102         77 PDIVLIAVGT   86 (243)
T ss_pred             CCEEEECCcC
Confidence            7999998774

>PRK08278 short chain dehydrogenase; Provisional

Probab=95.08  E-value=0.082  Score=47.85  Aligned_cols=80  Identities=21%  Similarity=0.223  Sum_probs=49.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-------HH-H---HHHcCCCe-e--eCCCCCCCchHHHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR-------KD-K---GEAFGMTD-F--INPDDEPNKSISELV  260 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~-------~~-~---~~~lga~~-v--~~~~~~~~~~~~~~~  260 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++       ++ .   +++.+... +  .|..+  .+++.+.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~   81 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRD--EDQVAAAV   81 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHH
Confidence            4678999998 9999999999988999 89999886542       11 1   22334332 2  23332  23333333


Q ss_pred             HHhcC-CCCccEEEEcCCC
Q 043260          261 KEMTH-GTGVDYGFECTGV  278 (332)
Q Consensus       261 ~~~~~-~~g~d~vid~~g~  278 (332)
                      .+... -..+|++|+++|.
T Consensus        82 ~~~~~~~g~id~li~~ag~  100 (273)
T PRK08278         82 AKAVERFGGIDICVNNASA  100 (273)
T ss_pred             HHHHHHhCCCCEEEECCCC
Confidence            32211 1158999999874

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=95.08  E-value=0.11  Score=49.99  Aligned_cols=74  Identities=23%  Similarity=0.365  Sum_probs=48.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCC-eee--CCCCCCCchHHHHHHHhcCCCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMT-DFI--NPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~-~v~--~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      ++++++|+|+ |++|.+.++.+...|. +|+++++++++.+.. ...+.. ..+  |..+   .   +.+.+..+  ++|
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd---~---~~v~~~l~--~ID  247 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEINGEDLPVKTLHWQVGQ---E---AALAELLE--KVD  247 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC---H---HHHHHHhC--CCC
Confidence            4789999998 9999999998888998 999998877665422 111111 122  3222   1   22333332  599


Q ss_pred             EEEEcCCC
Q 043260          271 YGFECTGV  278 (332)
Q Consensus       271 ~vid~~g~  278 (332)
                      ++|++.|.
T Consensus       248 iLInnAGi  255 (406)
T PRK07424        248 ILIINHGI  255 (406)
T ss_pred             EEEECCCc
Confidence            99998774

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.06  E-value=0.22  Score=45.45  Aligned_cols=95  Identities=22%  Similarity=0.229  Sum_probs=65.6

Q ss_pred             hcccchhhhHHHHHHhhCC-CCCCEEEEECCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          176 FLSCGYSSGFGAAWKEFKV-EKGSSVAVFGLG-AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       176 ~l~~~~~ta~~al~~~~~~-~~g~~vlV~G~g-~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      .+||+....+. +.+..++ -.|++|+|+|.| .+|.-++.++...|+ +|.++....                      
T Consensus       136 ~~PcTp~avi~-lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs~t----------------------  191 (285)
T PRK14191        136 FVPATPMGVMR-LLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHILT----------------------  191 (285)
T ss_pred             CCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeCCc----------------------
Confidence            45555544444 3344454 369999999985 999999999999998 888763221                      


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .++.+.+      +.+|+|+-++|.+..+.  -++++++ ..++.+|...
T Consensus       192 ~~l~~~~------~~ADIvV~AvG~p~~i~--~~~vk~G-avVIDvGi~~  232 (285)
T PRK14191        192 KDLSFYT------QNADIVCVGVGKPDLIK--ASMVKKG-AVVVDIGINR  232 (285)
T ss_pred             HHHHHHH------HhCCEEEEecCCCCcCC--HHHcCCC-cEEEEeeccc
Confidence            2222222      24899999999875543  4567887 9999999743

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.05  E-value=0.28  Score=40.00  Aligned_cols=94  Identities=19%  Similarity=0.126  Sum_probs=63.5

Q ss_pred             cccchhhhHHHHHHhhCC-CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCc
Q 043260          177 LSCGYSSGFGAAWKEFKV-EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK  254 (332)
Q Consensus       177 l~~~~~ta~~al~~~~~~-~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~  254 (332)
                      +++.....+..+ +..++ -.|++|+|+|. ..+|.-++.++...|+ +|+.+.+...                      
T Consensus         8 ~p~t~~a~~~ll-~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~ga-tV~~~~~~t~----------------------   63 (140)
T cd05212           8 VSPVAKAVKELL-NKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGA-TVYSCDWKTI----------------------   63 (140)
T ss_pred             cccHHHHHHHHH-HHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeCCCCc----------------------
Confidence            444433333323 33343 47999999998 8999999999999998 8888865321                      


Q ss_pred             hHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       255 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ++.+.+      +.+|+|+-++|.+..+.  -++++++ ..++.+|...
T Consensus        64 ~l~~~v------~~ADIVvsAtg~~~~i~--~~~ikpG-a~Vidvg~~~  103 (140)
T cd05212          64 QLQSKV------HDADVVVVGSPKPEKVP--TEWIKPG-ATVINCSPTK  103 (140)
T ss_pred             CHHHHH------hhCCEEEEecCCCCccC--HHHcCCC-CEEEEcCCCc
Confidence            122222      24899999999864433  5568887 8888888654

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.05  E-value=0.11  Score=46.74  Aligned_cols=80  Identities=21%  Similarity=0.311  Sum_probs=51.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-e--eCCCCCCCchHHHHHHHhcCC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-F--INPDDEPNKSISELVKEMTHG-  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~~~~~~~~-  266 (332)
                      .+++++|+|+ +++|..++..+...|+ +|+++++++++.+.+    ++.|.+. .  .|..+  .++..+.+.+.... 
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   85 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTD--EDGVQAMVSQIEKEV   85 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHhC
Confidence            5678999998 9999999988888999 899998888765432    2334432 2  23322  23333333332111 


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ..+|++|.+.|.
T Consensus        86 ~~id~li~~ag~   97 (265)
T PRK07097         86 GVIDILVNNAGI   97 (265)
T ss_pred             CCCCEEEECCCC
Confidence            258999999874

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.04  E-value=0.3  Score=42.91  Aligned_cols=47  Identities=30%  Similarity=0.386  Sum_probs=38.1

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc----------chHHHHHHcC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP----------CRKDKGEAFG  241 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~----------~~~~~~~~lg  241 (332)
                      -.|.+|+|+|-|.+|..+++++...|.+.|.++|.+.          +.++..++.+
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~   77 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALG   77 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhC
Confidence            4688999999999999999999999985666677776          6666665554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.00  E-value=0.12  Score=46.04  Aligned_cols=33  Identities=24%  Similarity=0.444  Sum_probs=29.9

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      +|||+|+|++|-..+..+...|.+++.++|.+.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            489999999999999999999999999998654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK12743 oxidoreductase; Provisional

Probab=94.99  E-value=0.16  Score=45.30  Aligned_cols=79  Identities=11%  Similarity=0.039  Sum_probs=48.0

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHH----HHHHcCCC-eee--CCCCCCCchHHHHHHHhcC-C
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK-NPCRKD----KGEAFGMT-DFI--NPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~-~~~~~~----~~~~lga~-~v~--~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      ++++||+|+ |++|..+++.+...|+ +|+++.+ +.++.+    .+++.|.. ..+  |..+  .++....+.+... -
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   78 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSD--LPEGAQALDKLIQRL   78 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            468999998 9999999999999999 8877754 433332    22334543 222  3322  2333232322211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ..+|++|.+.|.
T Consensus        79 ~~id~li~~ag~   90 (256)
T PRK12743         79 GRIDVLVNNAGA   90 (256)
T ss_pred             CCCCEEEECCCC
Confidence            258999998874

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=94.98  E-value=0.094  Score=40.65  Aligned_cols=93  Identities=22%  Similarity=0.287  Sum_probs=57.7

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC---eeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT---DFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      |.+||-.|+|. |...+.+++.. ..+++.++.+++..+.++.    .+.+   .++.      .++.+..... ....+
T Consensus         1 g~~vlD~~~G~-G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~------~D~~~~~~~~-~~~~~   71 (117)
T PF13659_consen    1 GDRVLDPGCGS-GTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIV------GDARDLPEPL-PDGKF   71 (117)
T ss_dssp             TEEEEEETSTT-CHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEE------SHHHHHHHTC-TTT-E
T ss_pred             CCEEEEcCcch-HHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEE------Cchhhchhhc-cCcee
Confidence            56788887644 44444555544 4499999999998887754    3332   2221      3343333223 34589


Q ss_pred             cEEEEcCCC--------------hHHHHHHHHHhccCCcEEEEE
Q 043260          270 DYGFECTGV--------------ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       270 d~vid~~g~--------------~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      |+|+-+..-              ...+..+.+.|+++ |+++++
T Consensus        72 D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g-G~~~~~  114 (117)
T PF13659_consen   72 DLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG-GVLVFI  114 (117)
T ss_dssp             EEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCC-eEEEEE
Confidence            999985432              13478999999998 998875

...

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.96  E-value=0.17  Score=46.67  Aligned_cols=82  Identities=20%  Similarity=0.162  Sum_probs=48.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHH-H---HHHcCCCeeeCCCCC-CCchHHHHHHHhcCCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP-CRKD-K---GEAFGMTDFINPDDE-PNKSISELVKEMTHGTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~-~~~~-~---~~~lga~~v~~~~~~-~~~~~~~~~~~~~~~~g  268 (332)
                      .|+++||+|+ +++|...++.+...|+ +|++.++.. ++.+ .   +++.|.......-+. +.++..+.+.+...-.+
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~   89 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGG   89 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            5788999998 9999999999988999 888887643 2322 2   233343322211111 12233332222111126


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|++|+++|.
T Consensus        90 iD~li~nAG~   99 (306)
T PRK07792         90 LDIVVNNAGI   99 (306)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=94.96  E-value=0.11  Score=41.52  Aligned_cols=81  Identities=17%  Similarity=0.334  Sum_probs=50.0

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHHHH-cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGID-KNPCRKDKGEA-FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~-~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      +.-+|-|+|+|-+|..+...++..|. +|..+. ++.++.+.+.. ++...+.+..+            ..  ..+|++|
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~~~~~~~~~------------~~--~~aDlv~   73 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGAGAILDLEE------------IL--RDADLVF   73 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT-----TTG------------GG--CC-SEEE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCccccccccccccccccccccc------------cc--ccCCEEE
Confidence            34679999999999999999999998 887764 44555555544 44444433321            22  2589999


Q ss_pred             EcCCChHHHHHHHHHhccC
Q 043260          274 ECTGVASLISEALEATKLG  292 (332)
Q Consensus       274 d~~g~~~~~~~~~~~l~~~  292 (332)
                      -++.+ +.+....+.|...
T Consensus        74 iavpD-daI~~va~~La~~   91 (127)
T PF10727_consen   74 IAVPD-DAIAEVAEQLAQY   91 (127)
T ss_dssp             E-S-C-CHHHHHHHHHHCC
T ss_pred             EEech-HHHHHHHHHHHHh
Confidence            99999 4778777777653

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=94.94  E-value=0.15  Score=45.35  Aligned_cols=80  Identities=16%  Similarity=0.153  Sum_probs=51.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-e--eCCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-F--INPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      .++++||+|+ +++|..++..+...|. +|++++++.++.+.+    ++.+.+. +  .|..+  .++..+.+..... -
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   86 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFALSKL   86 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4789999998 9999999999889998 888888877665432    2234331 2  23332  2333333332211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      .++|++|.+.|.
T Consensus        87 ~~~d~li~~ag~   98 (255)
T PRK06113         87 GKVDILVNNAGG   98 (255)
T ss_pred             CCCCEEEECCCC
Confidence            258999998873

>TIGR00417 speE spermidine synthase

Probab=94.93  E-value=0.22  Score=45.29  Aligned_cols=103  Identities=12%  Similarity=0.021  Sum_probs=61.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC-C-CeeeCCCCC--CCchHHHHHHHhcCCCCcc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG-M-TDFINPDDE--PNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg-a-~~v~~~~~~--~~~~~~~~~~~~~~~~g~d  270 (332)
                      ...++||++|+|. |..+..+++.....++++++.+++-.+.+++.- . ...++....  ...+..+.+++.  ...+|
T Consensus        71 ~~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~yD  147 (270)
T TIGR00417        71 PNPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENTFD  147 (270)
T ss_pred             CCCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCCcc
Confidence            3456999999866 445556666555568999999988777766531 0 000000000  002233334332  23799


Q ss_pred             EEEEcCC----------ChHHHHHHHHHhccCCcEEEEEcC
Q 043260          271 YGFECTG----------VASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       271 ~vid~~g----------~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      +||-...          +.+.+..+.+.|+++ |.++....
T Consensus       148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pg-G~lv~~~~  187 (270)
T TIGR00417       148 VIIVDSTDPVGPAETLFTKEFYELLKKALNED-GIFVAQSE  187 (270)
T ss_pred             EEEEeCCCCCCcccchhHHHHHHHHHHHhCCC-cEEEEcCC
Confidence            9986443          224567889999998 99988743

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.91  E-value=0.24  Score=45.38  Aligned_cols=40  Identities=20%  Similarity=0.267  Sum_probs=34.6

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE  238 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~  238 (332)
                      .+|.|+|+|.+|...++.+...|. +|++.++++++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~   43 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAK   43 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHH
Confidence            479999999999999999888898 9999999988766553

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.90  E-value=0.24  Score=42.42  Aligned_cols=95  Identities=26%  Similarity=0.420  Sum_probs=55.5

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhc-CC----------
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMT-HG----------  266 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~-~~----------  266 (332)
                      ++|.|+|.|-+|+-++..+...|. +|+++|.++++.+.+.+ |-..+.   +   ..+.+.+++.. .+          
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~-g~~p~~---E---~~l~~ll~~~~~~~~l~~t~~~~~   72 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNN-GELPIY---E---PGLDELLKENVSAGRLRATTDIEE   72 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHT-TSSSS----C---TTHHHHHHHHHHTTSEEEESEHHH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhh-cccccc---c---cchhhhhccccccccchhhhhhhh
Confidence            478899999999999999999999 99999999999887765 322221   1   33444444322 11          


Q ss_pred             --CCccEEEEcCCCh-------------HHHHHHHHHhccCCcEEEEEcCC
Q 043260          267 --TGVDYGFECTGVA-------------SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       267 --~g~d~vid~~g~~-------------~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                        ...|++|-|++++             +++..+.+.+++  +.++.+-+.
T Consensus        73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~--~~lvV~~ST  121 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP--GDLVVIEST  121 (185)
T ss_dssp             HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS--CEEEEESSS
T ss_pred             hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh--cceEEEccE
Confidence              1379999999875             234444445554  566666544

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK13243 glyoxylate reductase; Reviewed

Probab=94.89  E-value=0.16  Score=47.77  Aligned_cols=37  Identities=24%  Similarity=0.469  Sum_probs=33.4

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR  233 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~  233 (332)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++.+.
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  185 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP  185 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence            57899999999999999999999999 99999987543

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=94.87  E-value=0.14  Score=45.07  Aligned_cols=80  Identities=20%  Similarity=0.234  Sum_probs=51.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCC-eee--CCCCCCCchHHHHHHHhcC-CCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMT-DFI--NPDDEPNKSISELVKEMTH-GTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~-~v~--~~~~~~~~~~~~~~~~~~~-~~g~  269 (332)
                      ++.++||+|+ |.+|..+++.+...|. .|++.+++.++++.+ ..++.. .++  |..+  .+++.+.+.+... -.++
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i   81 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSD--RDEVKALGQKAEADLEGV   81 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999998 9999999999988998 888888877766543 334432 122  2222  2333333322211 1258


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |.+|.+.|.
T Consensus        82 d~vi~~ag~   90 (245)
T PRK12936         82 DILVNNAGI   90 (245)
T ss_pred             CEEEECCCC
Confidence            999999884

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.86  E-value=0.16  Score=44.67  Aligned_cols=82  Identities=13%  Similarity=0.234  Sum_probs=51.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-eeCCCCCCCchHHHHHHHhcC-CCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FINPDDEPNKSISELVKEMTH-GTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~~~~~~~~~~~~~~~~~~~~-~~g  268 (332)
                      .+.+++|+|+ |.+|..++..+...|. +|+++++++++.+..    +..+... ++..+-....++.+.+++... -.+
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS   84 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            3578999998 9999999998888999 999999987665432    2233221 222221112334333333211 126


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|++|.+.|.
T Consensus        85 id~vi~~ag~   94 (239)
T PRK07666         85 IDILINNAGI   94 (239)
T ss_pred             ccEEEEcCcc
Confidence            8999998874

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.86  E-value=0.2  Score=50.43  Aligned_cols=95  Identities=14%  Similarity=0.191  Sum_probs=64.4

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      +.++|+|.|.+|+..++.++..|. +++++|.++++.+.+++.|...+. .+.   .+ .+.++ ..+-..+|.++-+++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~-GD~---~~-~~~L~-~a~i~~a~~viv~~~  490 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVL-GNA---AN-EEIMQ-LAHLDCARWLLLTIP  490 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEE-cCC---CC-HHHHH-hcCccccCEEEEEcC
Confidence            678999999999999999999998 999999999999999988865544 221   11 12232 233346898888877


Q ss_pred             ChHH---HHHHHHHhccCCcEEEEEc
Q 043260          278 VASL---ISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       278 ~~~~---~~~~~~~l~~~~G~~v~~G  300 (332)
                      +.+.   +-...+...+. -+++.-.
T Consensus       491 ~~~~~~~iv~~~~~~~~~-~~iiar~  515 (558)
T PRK10669        491 NGYEAGEIVASAREKRPD-IEIIARA  515 (558)
T ss_pred             ChHHHHHHHHHHHHHCCC-CeEEEEE
Confidence            6432   22333444444 5555443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=94.85  E-value=0.13  Score=45.25  Aligned_cols=100  Identities=22%  Similarity=0.320  Sum_probs=65.1

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHH----cCCCe--eeCCCCCCCchHHHHHHH
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEA----FGMTD--FINPDDEPNKSISELVKE  262 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~~~~  262 (332)
                      ....++++++||=+|+|. |..+..+++..+. .+|+.+|.+++..+.+++    .+.+.  ++..+.          .+
T Consensus        39 ~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~----------~~  107 (231)
T TIGR02752        39 KRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA----------ME  107 (231)
T ss_pred             HhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech----------hc
Confidence            455678899999999876 6677777777642 389999999887766543    23322  222111          11


Q ss_pred             h-cCCCCccEEEEcCC-----C-hHHHHHHHHHhccCCcEEEEEcC
Q 043260          263 M-THGTGVDYGFECTG-----V-ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       263 ~-~~~~g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      . .....+|+|+-+..     . ...+.++.+.|+++ |.++++-.
T Consensus       108 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~  152 (231)
T TIGR02752       108 LPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG-GKVVCLET  152 (231)
T ss_pred             CCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcC-eEEEEEEC
Confidence            1 12336999986432     1 23567889999998 99987643

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.84  E-value=0.065  Score=44.50  Aligned_cols=93  Identities=14%  Similarity=0.109  Sum_probs=58.2

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC------CeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM------TDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga------~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      +|.|+|+|..|.+++..+...|. +|.+..++++..+.+++-+.      +..+...-....++.+.+      .++|+|
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~------~~ad~I   73 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL------EDADII   73 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH------TT-SEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh------CcccEE
Confidence            58899999999999999999997 99999999887776655321      111111100113333333      258999


Q ss_pred             EEcCCChHHHHHHHHHhccC--CcEEEEE
Q 043260          273 FECTGVASLISEALEATKLG--KGKVMAI  299 (332)
Q Consensus       273 id~~g~~~~~~~~~~~l~~~--~G~~v~~  299 (332)
                      +-++.+. .+...++.+++.  .+..+..
T Consensus        74 iiavPs~-~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   74 IIAVPSQ-AHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             EE-S-GG-GHHHHHHHHTTTSHTT-EEEE
T ss_pred             EecccHH-HHHHHHHHHhhccCCCCEEEE
Confidence            9999984 556666666653  1444444

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=94.84  E-value=0.34  Score=44.68  Aligned_cols=43  Identities=26%  Similarity=0.442  Sum_probs=37.1

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      +|.|+|.|.+|...+.-+...|. +|++.++++++.+.+.+.|+
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~~g~   44 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAEEGA   44 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCC
Confidence            68899999999988888888898 89999999988887776664

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=94.83  E-value=0.31  Score=45.09  Aligned_cols=93  Identities=18%  Similarity=0.220  Sum_probs=60.2

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCC-eEEEEcCCcchHHH-HHHc-------CCCeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAA-KIIGIDKNPCRKDK-GEAF-------GMTDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~-~Vi~~~~~~~~~~~-~~~l-------ga~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      +|.|+|+|.+|..++..+...|.. +|+++++++++.+. +.++       +....+..     .++. .+      .++
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~-----~~~~-~l------~~a   69 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA-----GDYS-DC------KDA   69 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc-----CCHH-Hh------CCC
Confidence            689999999999999998888863 89999998877542 2222       22111111     1121 11      369


Q ss_pred             cEEEEcCCCh---------------HHHH---HHHHHhccCCcEEEEEcCCCC
Q 043260          270 DYGFECTGVA---------------SLIS---EALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       270 d~vid~~g~~---------------~~~~---~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      |+||.++|.+               ..+.   ..++..++. +.++.++++.+
T Consensus        70 DIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~-~~vivvsNP~d  121 (306)
T cd05291          70 DIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFD-GIFLVASNPVD  121 (306)
T ss_pred             CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEecChHH
Confidence            9999999974               1122   233344565 88888887653

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PLN02928 oxidoreductase family protein

Probab=94.83  E-value=0.21  Score=47.18  Aligned_cols=35  Identities=29%  Similarity=0.541  Sum_probs=32.3

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .|+++.|+|.|.+|..+++.++.+|+ +|++++++.
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~  192 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW  192 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC
Confidence            57899999999999999999999999 999998864

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.81  E-value=0.054  Score=44.35  Aligned_cols=98  Identities=16%  Similarity=0.167  Sum_probs=58.5

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC---CCchHHHHHHHhcCCCCccEEEEcC
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE---PNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~---~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      |+|+|+|++|...+..++..|. +|..+.+.+ +.+..++.|........+.   ........   ......+|+||-|+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~viv~v   75 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP---SADAGPYDLVIVAV   75 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH---GHHHSTESEEEE-S
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc---hhccCCCcEEEEEe
Confidence            6899999999998888888998 999999888 7777766553221111000   00000000   01123699999999


Q ss_pred             CChH---HHHHHHHHhccCCcEEEEEcCCC
Q 043260          277 GVAS---LISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       277 g~~~---~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      -+.+   .+..+...+.+. ..++.+.+--
T Consensus        76 Ka~~~~~~l~~l~~~~~~~-t~iv~~qNG~  104 (151)
T PF02558_consen   76 KAYQLEQALQSLKPYLDPN-TTIVSLQNGM  104 (151)
T ss_dssp             SGGGHHHHHHHHCTGEETT-EEEEEESSSS
T ss_pred             cccchHHHHHHHhhccCCC-cEEEEEeCCC
Confidence            7742   333444444444 6777776544

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=94.81  E-value=0.34  Score=44.68  Aligned_cols=43  Identities=28%  Similarity=0.543  Sum_probs=37.0

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      +|.++|.|.+|...+.-+...|. +|++.++++++.+.+++.|+
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~~g~   44 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAGKLGI   44 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCC
Confidence            58889999999988888888898 89999999988887777764

>PRK06523 short chain dehydrogenase; Provisional

Probab=94.80  E-value=0.13  Score=45.86  Aligned_cols=74  Identities=16%  Similarity=0.249  Sum_probs=47.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC-ee--eCCCCCCCchHHHHHHHhcC-CCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT-DF--INPDDEPNKSISELVKEMTH-GTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~-~v--~~~~~~~~~~~~~~~~~~~~-~~g~d  270 (332)
                      +|+++||+|+ |++|...++.+...|+ +|++++++..+.     .+.. ..  .|..+  .++..+.+.+... -.++|
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~-----~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id   79 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDD-----LPEGVEFVAADLTT--AEGCAAVARAVLERLGGVD   79 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhh-----cCCceeEEecCCCC--HHHHHHHHHHHHHHcCCCC
Confidence            5789999998 9999999999988999 899998875432     1211 11  23322  2333222222211 12589


Q ss_pred             EEEEcCC
Q 043260          271 YGFECTG  277 (332)
Q Consensus       271 ~vid~~g  277 (332)
                      ++|++.|
T Consensus        80 ~vi~~ag   86 (260)
T PRK06523         80 ILVHVLG   86 (260)
T ss_pred             EEEECCc
Confidence            9999987

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=94.79  E-value=0.087  Score=47.19  Aligned_cols=107  Identities=22%  Similarity=0.286  Sum_probs=66.9

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCCCe--eeCCCCCCCchHHHHHH
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGMTD--FINPDDEPNKSISELVK  261 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~~~  261 (332)
                      ....+++||++|+=.|.|. |.+...+++..| -.+|+-.+.++++.+.+++    .|.+.  .+...+...+.+.+   
T Consensus        33 ~~~l~i~pG~~VlEaGtGS-G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~---  108 (247)
T PF08704_consen   33 LMRLDIRPGSRVLEAGTGS-GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE---  108 (247)
T ss_dssp             HHHTT--TT-EEEEE--TT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST---
T ss_pred             HHHcCCCCCCEEEEecCCc-HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc---
Confidence            3567999999999887755 667777777765 3589999999998876643    56542  22222201122210   


Q ss_pred             HhcCCCCccEEEEcCCCh-HHHHHHHHHh-ccCCcEEEEEcCC
Q 043260          262 EMTHGTGVDYGFECTGVA-SLISEALEAT-KLGKGKVMAIGAA  302 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~~-~~~~~~~~~l-~~~~G~~v~~G~~  302 (332)
                      ++  ...+|.||--...+ ..+..+.+.| +++ |+++.+...
T Consensus       109 ~~--~~~~DavfLDlp~Pw~~i~~~~~~L~~~g-G~i~~fsP~  148 (247)
T PF08704_consen  109 EL--ESDFDAVFLDLPDPWEAIPHAKRALKKPG-GRICCFSPC  148 (247)
T ss_dssp             T---TTSEEEEEEESSSGGGGHHHHHHHE-EEE-EEEEEEESS
T ss_pred             cc--cCcccEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECCC
Confidence            11  23689888777765 4788999999 887 999988654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=94.78  E-value=0.74  Score=35.76  Aligned_cols=88  Identities=22%  Similarity=0.320  Sum_probs=62.0

Q ss_pred             EEEEECCChHHHHHHHHHHHc--CCCeEE-EEcCCcchHHH-HHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          199 SVAVFGLGAVGLGVMDRARIQ--GAAKII-GIDKNPCRKDK-GEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~--G~~~Vi-~~~~~~~~~~~-~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      +++|+|.|.+|......++..  +. +++ ++++++++.+. .+++|.. .+       .++.+.+.+    ..+|+|+-
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~-~v~~v~d~~~~~~~~~~~~~~~~-~~-------~~~~~ll~~----~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDF-EVVAVCDPDPERAEAFAEKYGIP-VY-------TDLEELLAD----EDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHTTSE-EE-------SSHHHHHHH----TTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCc-EEEEEEeCCHHHHHHHHHHhccc-ch-------hHHHHHHHh----hcCCEEEE
Confidence            588999999999888666665  44 554 56777777664 5667776 43       223333332    26999999


Q ss_pred             cCCChHHHHHHHHHhccCCcEEEEEcC
Q 043260          275 CTGVASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       275 ~~g~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      ++.+..+...+.+++..+  .-+++--
T Consensus        69 ~tp~~~h~~~~~~~l~~g--~~v~~EK   93 (120)
T PF01408_consen   69 ATPPSSHAEIAKKALEAG--KHVLVEK   93 (120)
T ss_dssp             ESSGGGHHHHHHHHHHTT--SEEEEES
T ss_pred             ecCCcchHHHHHHHHHcC--CEEEEEc
Confidence            999988888888888874  5566553

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=94.78  E-value=0.27  Score=43.93  Aligned_cols=98  Identities=16%  Similarity=0.189  Sum_probs=64.5

Q ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC-CeeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          192 FKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM-TDFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       192 ~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga-~~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      ....++++||-+|+|. |..+..+++ .|. +|+++|.+++.++.+++... ..++..+.   .+    +  ......||
T Consensus        38 l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~d~---~~----~--~~~~~~fD  105 (251)
T PRK10258         38 LPQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQKDAADHYLAGDI---ES----L--PLATATFD  105 (251)
T ss_pred             cCccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCCCCCEEEcCc---cc----C--cCCCCcEE
Confidence            3345678899999976 666555554 576 99999999998888877543 22222211   11    1  01233699


Q ss_pred             EEEEcCCC------hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          271 YGFECTGV------ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       271 ~vid~~g~------~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +|+....-      ...+.++.+.|+++ |.+++....
T Consensus       106 ~V~s~~~l~~~~d~~~~l~~~~~~Lk~g-G~l~~~~~~  142 (251)
T PRK10258        106 LAWSNLAVQWCGNLSTALRELYRVVRPG-GVVAFTTLV  142 (251)
T ss_pred             EEEECchhhhcCCHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence            99975432      24578899999998 999877543

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=94.77  E-value=0.22  Score=45.67  Aligned_cols=81  Identities=17%  Similarity=0.197  Sum_probs=57.2

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----HHcCCC---eeeCCCCCCCchHHHHHHHhcC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-----EAFGMT---DFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-----~~lga~---~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      +.|++.+|.|+ .++|.+-+.-+...|. +|+.+.|+++|++..     ++.+..   .++|...  .+...+.+++...
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAkrG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~--~~~~ye~i~~~l~  123 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAKRGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTK--GDEVYEKLLEKLA  123 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCC--CchhHHHHHHHhc
Confidence            45688999999 8999886655555999 899999999999754     333432   2355555  1223455666666


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      +..+-+.++++|.
T Consensus       124 ~~~VgILVNNvG~  136 (312)
T KOG1014|consen  124 GLDVGILVNNVGM  136 (312)
T ss_pred             CCceEEEEecccc
Confidence            6577889999885

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=94.77  E-value=0.26  Score=45.07  Aligned_cols=95  Identities=14%  Similarity=0.126  Sum_probs=65.8

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc------CCC-eeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF------GMT-DFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l------ga~-~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      ++|||+|.|. |-.+-.+++....+++++++.+++-.+++++.      |++ .-++..   .++-.+.+++...  +||
T Consensus        78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~---i~Dg~~~v~~~~~--~fD  151 (282)
T COG0421          78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEII---IDDGVEFLRDCEE--KFD  151 (282)
T ss_pred             CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEE---eccHHHHHHhCCC--cCC
Confidence            5899998755 55666777777778999999999999988773      233 111111   1334455655433  799


Q ss_pred             EEEEcCCC----------hHHHHHHHHHhccCCcEEEEE
Q 043260          271 YGFECTGV----------ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       271 ~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      +||--+.+          ...+..+-++|+++ |.++.-
T Consensus       152 vIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~-Gi~v~q  189 (282)
T COG0421         152 VIIVDSTDPVGPAEALFTEEFYEGCRRALKED-GIFVAQ  189 (282)
T ss_pred             EEEEcCCCCCCcccccCCHHHHHHHHHhcCCC-cEEEEe
Confidence            99874443          24678999999998 988876

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.76  E-value=0.15  Score=46.76  Aligned_cols=93  Identities=15%  Similarity=0.099  Sum_probs=58.3

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe---eeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD---FINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~---v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      +|+|+|+|.+|...+..+...|. +|++++++.++.+.+++.|...   ..........+    ..+.   ..+|+||-+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~---~~~d~vila   73 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADD----PAEL---GPQDLVILA   73 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCceeecccCCCC----hhHc---CCCCEEEEe
Confidence            68999999999998888888898 8999999888777776656421   00000000011    1111   368999999


Q ss_pred             CCChHHHHHHHHHhc----cCCcEEEEEcC
Q 043260          276 TGVASLISEALEATK----LGKGKVMAIGA  301 (332)
Q Consensus       276 ~g~~~~~~~~~~~l~----~~~G~~v~~G~  301 (332)
                      +... .+..+++.++    ++ ..++.+.+
T Consensus        74 ~k~~-~~~~~~~~l~~~l~~~-~~iv~~~n  101 (304)
T PRK06522         74 VKAY-QLPAALPSLAPLLGPD-TPVLFLQN  101 (304)
T ss_pred             cccc-cHHHHHHHHhhhcCCC-CEEEEecC
Confidence            8874 3344444444    33 45665543

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=94.76  E-value=0.38  Score=45.73  Aligned_cols=90  Identities=18%  Similarity=0.263  Sum_probs=61.2

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHc--CCCeEEEEc--CCcchH-HHHHHcCCCeeeCCCCCCCchHHHHHHH---------
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQ--GAAKIIGID--KNPCRK-DKGEAFGMTDFINPDDEPNKSISELVKE---------  262 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~--G~~~Vi~~~--~~~~~~-~~~~~lga~~v~~~~~~~~~~~~~~~~~---------  262 (332)
                      ++|.|+|+ |.+|..++...+..  .+ +|++..  ++.+++ +.+++++...+...++    ...+.+++         
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f-~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~----~~~~~l~~~l~~~~~~v   76 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRF-RVVALSAGKNVELLAEQAREFRPKYVVVADE----EAAKELKEALAAAGIEV   76 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCcccc-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----HHHHHHHHhhccCCceE
Confidence            47899997 99999999988765  46 677664  444444 4667888887665442    22222222         


Q ss_pred             ---------hcCCCCccEEEEcCCChHHHHHHHHHhccC
Q 043260          263 ---------MTHGTGVDYGFECTGVASLISEALEATKLG  292 (332)
Q Consensus       263 ---------~~~~~g~d~vid~~g~~~~~~~~~~~l~~~  292 (332)
                               +.....+|+|+++.++...+...+..++.|
T Consensus        77 ~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG  115 (385)
T PRK05447         77 LAGEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAG  115 (385)
T ss_pred             EEChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCC
Confidence                     222235899999999876778888888774

>PLN03075 nicotianamine synthase; Provisional

Probab=94.75  E-value=0.2  Score=46.03  Aligned_cols=99  Identities=15%  Similarity=0.122  Sum_probs=66.0

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHHcC-----CCeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEAFG-----MTDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~lg-----a~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      +.++|+-+|+|+.++.++.+++.+. -.+++.+|.+++..+.+++.-     ...-+....   .+..+   .......|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~---~Da~~---~~~~l~~F  196 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT---ADVMD---VTESLKEY  196 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE---Cchhh---cccccCCc
Confidence            7789999999999998888887654 237999999999888776632     111111111   11111   11112379


Q ss_pred             cEEEEcC------CC-hHHHHHHHHHhccCCcEEEEEcC
Q 043260          270 DYGFECT------GV-ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       270 d~vid~~------g~-~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      |+||-.+      .. ...+....+.|+++ |.+++-..
T Consensus       197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPG-G~Lvlr~~  234 (296)
T PLN03075        197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPG-ALLMLRSA  234 (296)
T ss_pred             CEEEEecccccccccHHHHHHHHHHhcCCC-cEEEEecc
Confidence            9999975      22 24678999999998 88877653

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=94.74  E-value=0.35  Score=44.55  Aligned_cols=43  Identities=28%  Similarity=0.342  Sum_probs=37.5

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~~g~   45 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVDKGA   45 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHcCC
Confidence            68899999999998888888898 89999999998887777664

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.73  E-value=0.13  Score=48.33  Aligned_cols=76  Identities=17%  Similarity=0.127  Sum_probs=48.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcC--CC-eee--CCCCCCCchHHHHHHHhcCCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFG--MT-DFI--NPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lg--a~-~v~--~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ++++|||+|+ |.+|..+++.+...|. +|++++++....... ..++  .. ..+  |..+  .+    .+.+.....+
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~----~~~~~~~~~~   75 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRD--AA----KLRKAIAEFK   75 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCCC--HH----HHHHHHhhcC
Confidence            4688999998 9999999999999998 899998776543221 2222  11 112  2222  12    2333333336


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|+||++++.
T Consensus        76 ~d~vih~A~~   85 (349)
T TIGR02622        76 PEIVFHLAAQ   85 (349)
T ss_pred             CCEEEECCcc
Confidence            8999999873

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=94.72  E-value=0.36  Score=35.57  Aligned_cols=35  Identities=34%  Similarity=0.561  Sum_probs=29.9

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      -.+++++|+|+|.+|..+++.+...+..+|.+.++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46789999999999999999999886558888866

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.72  E-value=0.18  Score=44.64  Aligned_cols=79  Identities=16%  Similarity=0.291  Sum_probs=50.5

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCe-e--eCCCCCCCchHHHHHHHhc-CCC
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTD-F--INPDDEPNKSISELVKEMT-HGT  267 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~-v--~~~~~~~~~~~~~~~~~~~-~~~  267 (332)
                      ++++||+|+ |.+|..++..+...|. +|++++++.++.+.+.+    .+... .  .|..+  .+++.+.+.+.. .-.
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   77 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK--EDEIADMIAAAAAEFG   77 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHhcC
Confidence            357999998 9999999998888999 89999998876654432    23221 1  23332  233333332221 112


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      +.|+||.+.+.
T Consensus        78 ~~d~vi~~a~~   88 (255)
T TIGR01963        78 GLDILVNNAGI   88 (255)
T ss_pred             CCCEEEECCCC
Confidence            58999998864

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>TIGR00452 methyltransferase, putative

Probab=94.71  E-value=0.46  Score=44.21  Aligned_cols=102  Identities=13%  Similarity=0.147  Sum_probs=63.2

Q ss_pred             HHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH---HHHHc-CCC---eeeCCCCCCCchHH
Q 043260          185 FGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD---KGEAF-GMT---DFINPDDEPNKSIS  257 (332)
Q Consensus       185 ~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~---~~~~l-ga~---~v~~~~~~~~~~~~  257 (332)
                      |..+.......+|++||-+|+|. |..+..++. .|...|+++|.++.-+.   .++++ +.+   .+...      +  
T Consensus       110 ~~~~l~~l~~~~g~~VLDvGCG~-G~~~~~~~~-~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~------~--  179 (314)
T TIGR00452       110 WDRVLPHLSPLKGRTILDVGCGS-GYHMWRMLG-HGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL------G--  179 (314)
T ss_pred             HHHHHHhcCCCCCCEEEEeccCC-cHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC------C--
Confidence            33343445667889999999977 666666655 46658999998885443   22222 211   22211      1  


Q ss_pred             HHHHHhcCCCCccEEEEcC-----CCh-HHHHHHHHHhccCCcEEEEE
Q 043260          258 ELVKEMTHGTGVDYGFECT-----GVA-SLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       258 ~~~~~~~~~~g~d~vid~~-----g~~-~~~~~~~~~l~~~~G~~v~~  299 (332)
                        +.++.....||+|+...     .++ ..+.++.+.|+++ |++++-
T Consensus       180 --ie~lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpG-G~Lvle  224 (314)
T TIGR00452       180 --IEQLHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIK-GELVLE  224 (314)
T ss_pred             --HHHCCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCC-CEEEEE
Confidence              22232223699998743     122 5788999999998 998863

Known examples to date are restricted to the proteobacteria.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=94.69  E-value=0.31  Score=47.52  Aligned_cols=87  Identities=15%  Similarity=0.244  Sum_probs=54.9

Q ss_pred             EEEEEC-CChHHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          199 SVAVFG-LGAVGLGVMDRARIQGAAKIIGIDKNPCRK-DKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       199 ~vlV~G-~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~-~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      +|+|+| .|.+|.+.+..++..|. +|+++++++++. +.+.++|....        .+..+.+      ..+|+||-|+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~~~~~~~a~~~gv~~~--------~~~~e~~------~~aDvVIlav   66 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDPKKGKEVAKELGVEYA--------NDNIDAA------KDADIVIISV   66 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHcCCeec--------cCHHHHh------ccCCEEEEec
Confidence            688998 59999999999999998 899999988774 56666775211        1111111      1367777777


Q ss_pred             CChHH---HHHHHHHhccCCcEEEEEcC
Q 043260          277 GVASL---ISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       277 g~~~~---~~~~~~~l~~~~G~~v~~G~  301 (332)
                      .....   +.+....++++ ..++.+++
T Consensus        67 p~~~~~~vl~~l~~~l~~~-~iViDvsS   93 (437)
T PRK08655         67 PINVTEDVIKEVAPHVKEG-SLLMDVTS   93 (437)
T ss_pred             CHHHHHHHHHHHHhhCCCC-CEEEEccc
Confidence            65321   22333334444 55666665

>PRK05650 short chain dehydrogenase; Provisional

Probab=94.68  E-value=0.14  Score=46.13  Aligned_cols=77  Identities=18%  Similarity=0.227  Sum_probs=49.1

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHHhcC-CCCc
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKEMTH-GTGV  269 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~~~~-~~g~  269 (332)
                      ++||+|+ |++|..+++.+...|. +|++++++.++.+.+    +..+.+. ++  |..+  ..++.+.+..... ..++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~~i   78 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD--YSQLTALAQACEEKWGGI   78 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            6899998 9999999988888999 899999888765532    2234332 22  2222  2233332322211 1258


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|.++|.
T Consensus        79 d~lI~~ag~   87 (270)
T PRK05650         79 DVIVNNAGV   87 (270)
T ss_pred             CEEEECCCC
Confidence            999999884

>PRK06849 hypothetical protein; Provisional

Probab=94.68  E-value=0.24  Score=47.45  Aligned_cols=95  Identities=13%  Similarity=0.064  Sum_probs=62.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee--eCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF--INPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v--~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      ..++|||+|+ .+.|+..++.++..|. +|++++.++...... ...++..  +.....+.+.+.+.+.++....++|+|
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~-s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~v   80 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRF-SRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLL   80 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHH-HHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence            4588999998 6789999999999999 999998876544321 1223332  322221235567777777666689999


Q ss_pred             EEcCCChHHHHHHHHHhccC
Q 043260          273 FECTGVASLISEALEATKLG  292 (332)
Q Consensus       273 id~~g~~~~~~~~~~~l~~~  292 (332)
                      |-+......+....+.+.+.
T Consensus        81 IP~~e~~~~~a~~~~~l~~~  100 (389)
T PRK06849         81 IPTCEEVFYLSHAKEELSAY  100 (389)
T ss_pred             EECChHHHhHHhhhhhhcCC
Confidence            98876432333444556554

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=94.63  E-value=0.2  Score=45.80  Aligned_cols=115  Identities=22%  Similarity=0.247  Sum_probs=69.0

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH--------HHcCCCee---------------eCCCCC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG--------EAFGMTDF---------------INPDDE  251 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~--------~~lga~~v---------------~~~~~~  251 (332)
                      -.++=|+|+|+|++|.+++.++.+.|++++-++|-+.-.+.-+        ...|-.++               ++.+. 
T Consensus        72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~-  150 (430)
T KOG2018|consen   72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARN-  150 (430)
T ss_pred             hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHH-
Confidence            3567788899999999999999999999999998766544321        22232111               11111 


Q ss_pred             CCchHH-HHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCc--EEEEEcCCCC-CcccCChHhH
Q 043260          252 PNKSIS-ELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKG--KVMAIGAANE-AKVPLNFPAI  314 (332)
Q Consensus       252 ~~~~~~-~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G--~~v~~G~~~~-~~~~~~~~~~  314 (332)
                        .-|. +--.+++.| .+|.|+||.-+-++--.+++..-.. |  .+...|.... .+..++..++
T Consensus       151 --~l~~~~s~edll~g-nPdFvvDciDNidtKVdLL~y~~~~-~l~Viss~GaaaksDPTrv~v~Di  213 (430)
T KOG2018|consen  151 --MLWTSSSEEDLLSG-NPDFVVDCIDNIDTKVDLLEYCYNH-GLKVISSTGAAAKSDPTRVNVADI  213 (430)
T ss_pred             --hhcCCCchhhhhcC-CCCeEeEhhhhhhhhhHHHHHHHHc-CCceEeccCccccCCCceeehhhc
Confidence              0000 001233444 5999999999876655666666555 4  3344455443 5555555443

>PRK07578 short chain dehydrogenase; Provisional

Probab=94.63  E-value=0.68  Score=39.47  Aligned_cols=88  Identities=19%  Similarity=0.268  Sum_probs=54.9

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      +++|+|+ |++|..++..+... . +|++++++..          ....|..+  .++..+.+.+.  + ++|++|.+.|
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~-~vi~~~r~~~----------~~~~D~~~--~~~~~~~~~~~--~-~id~lv~~ag   64 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-H-EVITAGRSSG----------DVQVDITD--PASIRALFEKV--G-KVDAVVSAAG   64 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-C-cEEEEecCCC----------ceEecCCC--hHHHHHHHHhc--C-CCCEEEECCC
Confidence            6899998 99999888877666 5 8999887653          11223333  23333333332  2 5899999887


Q ss_pred             Ch----------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          278 VA----------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       278 ~~----------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ..          +               ..+.+...+.++ |+++.++...+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-g~iv~iss~~~  115 (199)
T PRK07578         65 KVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDG-GSFTLTSGILS  115 (199)
T ss_pred             CCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEccccc
Confidence            41          0               123334455666 89998876543

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.62  E-value=0.29  Score=44.70  Aligned_cols=94  Identities=18%  Similarity=0.243  Sum_probs=66.1

Q ss_pred             hcccchhhhHHHHHHhhCC-CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          176 FLSCGYSSGFGAAWKEFKV-EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       176 ~l~~~~~ta~~al~~~~~~-~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      .+||+....+..+ +..++ -.|++++|+|. ..+|.-++.++...|+ +|+++.+..                      
T Consensus       138 ~~PcTp~av~~ll-~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~a-tVtv~hs~T----------------------  193 (285)
T PRK10792        138 LRPCTPRGIMTLL-ERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGC-TVTVCHRFT----------------------  193 (285)
T ss_pred             CCCCCHHHHHHHH-HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCC-eEEEEECCC----------------------
Confidence            3455554444434 44444 36999999998 5599999999999998 888875431                      


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      .++.+.+      +.+|+||.++|.+..+..  ++++++ ..++.+|..
T Consensus       194 ~~l~~~~------~~ADIvi~avG~p~~v~~--~~vk~g-avVIDvGin  233 (285)
T PRK10792        194 KNLRHHV------RNADLLVVAVGKPGFIPG--EWIKPG-AIVIDVGIN  233 (285)
T ss_pred             CCHHHHH------hhCCEEEEcCCCcccccH--HHcCCC-cEEEEcccc
Confidence            2222222      258999999998765543  788998 999999954

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.62  E-value=0.25  Score=48.68  Aligned_cols=71  Identities=25%  Similarity=0.285  Sum_probs=50.6

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc-----hHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC-----RKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~-----~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      ..+++|+|+|+|.+|+.++.+++..|. +|++++.++.     ..+.+++.|.........   .        .  ...+
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~---~--------~--~~~~   79 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRLGPGP---T--------L--PEDT   79 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc---c--------c--cCCC
Confidence            357789999999999999999999999 8999986542     123456667655443322   1        0  1258


Q ss_pred             cEEEEcCCCh
Q 043260          270 DYGFECTGVA  279 (332)
Q Consensus       270 d~vid~~g~~  279 (332)
                      |+||-+.|.+
T Consensus        80 D~Vv~s~Gi~   89 (480)
T PRK01438         80 DLVVTSPGWR   89 (480)
T ss_pred             CEEEECCCcC
Confidence            9999888763

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=94.60  E-value=0.26  Score=47.86  Aligned_cols=101  Identities=12%  Similarity=0.188  Sum_probs=63.9

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCC-ee--eCCCCCCCchHHHHHHH
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMT-DF--INPDDEPNKSISELVKE  262 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~-~v--~~~~~~~~~~~~~~~~~  262 (332)
                      ...+.++|++||=+|+|+ |-.+.++++.++..+|+++|.++++++.+    +.+|.+ .+  .+.+.   ...    ..
T Consensus       232 ~~L~~~~g~~VLDlcag~-G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~---~~~----~~  303 (426)
T TIGR00563       232 TWLAPQNEETILDACAAP-GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG---RGP----SQ  303 (426)
T ss_pred             HHhCCCCCCeEEEeCCCc-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc---ccc----cc
Confidence            345778999999998755 55555666655534899999999988755    445665 22  22111   111    00


Q ss_pred             hcCCCCccEEEE---cCCCh-------------------------HHHHHHHHHhccCCcEEEEE
Q 043260          263 MTHGTGVDYGFE---CTGVA-------------------------SLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       263 ~~~~~g~d~vid---~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~  299 (332)
                      ......||.||-   |+|..                         ..+..+++.|+++ |+++..
T Consensus       304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg-G~lvys  367 (426)
T TIGR00563       304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG-GTLVYA  367 (426)
T ss_pred             cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEE
Confidence            112236999985   44421                         3667889999998 998865

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.60  E-value=0.27  Score=44.92  Aligned_cols=95  Identities=16%  Similarity=0.254  Sum_probs=65.6

Q ss_pred             hcccchhhhHHHHHHhhCC-CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          176 FLSCGYSSGFGAAWKEFKV-EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       176 ~l~~~~~ta~~al~~~~~~-~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      .+||+....+..+ +.-++ -.|++|+|+|. ..+|.-++.++...|+ +|+++.+.                   .   
T Consensus       137 ~~PcTp~aii~lL-~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs~-------------------t---  192 (285)
T PRK14189        137 FRPCTPYGVMKML-ESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHSK-------------------T---  192 (285)
T ss_pred             CcCCCHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecCC-------------------C---
Confidence            3455544344333 44443 47999999998 5669999999999998 88875321                   1   


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .++.+.+      +.+|+|+-++|.+..+..  ++++++ ..++.+|...
T Consensus       193 ~~l~~~~------~~ADIVV~avG~~~~i~~--~~ik~g-avVIDVGin~  233 (285)
T PRK14189        193 RDLAAHT------RQADIVVAAVGKRNVLTA--DMVKPG-ATVIDVGMNR  233 (285)
T ss_pred             CCHHHHh------hhCCEEEEcCCCcCccCH--HHcCCC-CEEEEccccc
Confidence            2232222      248999999998765544  889998 9999999664

>PRK00536 speE spermidine synthase; Provisional

Probab=94.59  E-value=0.15  Score=46.02  Aligned_cols=98  Identities=8%  Similarity=-0.073  Sum_probs=63.1

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCC-CeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGM-TDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga-~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      ...++|||+|+|- |.++-.++|.-  .+|++++.+++-.+.+++ +.. ...++...   -.+...+.+.. ...||+|
T Consensus        71 ~~pk~VLIiGGGD-Gg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpR---v~l~~~~~~~~-~~~fDVI  143 (262)
T PRK00536         71 KELKEVLIVDGFD-LELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKN---FTHAKQLLDLD-IKKYDLI  143 (262)
T ss_pred             CCCCeEEEEcCCc-hHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCC---EEEeehhhhcc-CCcCCEE
Confidence            4458999998755 55566777764  389999999998888887 321 00111111   11111233322 2369998


Q ss_pred             EEc-CCChHHHHHHHHHhccCCcEEEEEc
Q 043260          273 FEC-TGVASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       273 id~-~g~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      |-- +-+++....+.++|+++ |.++.=+
T Consensus       144 IvDs~~~~~fy~~~~~~L~~~-Gi~v~Qs  171 (262)
T PRK00536        144 ICLQEPDIHKIDGLKRMLKED-GVFISVA  171 (262)
T ss_pred             EEcCCCChHHHHHHHHhcCCC-cEEEECC
Confidence            754 66666778999999998 9887644

>PLN02476 O-methyltransferase

Probab=94.58  E-value=0.41  Score=43.65  Aligned_cols=106  Identities=13%  Similarity=0.224  Sum_probs=68.2

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHH----HcCCCeeeCCCCCCCchHHHHHHHhc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGE----AFGMTDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~----~lga~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      ...+..+.++||=+|.+. |..++.+++.++ -.+|+.++.+++..+.++    +.|...-+....   .+..+.+.++.
T Consensus       112 ~L~~~~~ak~VLEIGT~t-GySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~---GdA~e~L~~l~  187 (278)
T PLN02476        112 MLVQILGAERCIEVGVYT-GYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH---GLAAESLKSMI  187 (278)
T ss_pred             HHHHhcCCCeEEEecCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHH
Confidence            445667788999998743 666667777663 237999999998877664    456542222222   33334444432


Q ss_pred             ---CCCCccEEEEcCCCh---HHHHHHHHHhccCCcEEEEEc
Q 043260          265 ---HGTGVDYGFECTGVA---SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       265 ---~~~g~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~G  300 (332)
                         ....||.||--..-.   ..+..+++.|+++ |.++.=.
T Consensus       188 ~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G-GvIV~DN  228 (278)
T PLN02476        188 QNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVG-GVIVMDN  228 (278)
T ss_pred             hcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEec
Confidence               123699988765542   4577889999998 9877543

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=94.57  E-value=0.23  Score=46.06  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=51.0

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHH-HHcCC--C--ee--eCCCCCCCchHHHHHHHhcC-C
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKG-EAFGM--T--DF--INPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~-~~lga--~--~v--~~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      +++++|+|+ +++|..+++.+...| . +|+++.+++++.+.+ +++..  .  .+  .|..+  .++..+.+.+... .
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   79 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGS--LDSVRQFVQQFRESG   79 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHHHHhC
Confidence            568999998 999999998888889 7 899998887766533 34431  1  12  23332  2333333333211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      .+.|++|+++|.
T Consensus        80 ~~iD~lI~nAG~   91 (314)
T TIGR01289        80 RPLDALVCNAAV   91 (314)
T ss_pred             CCCCEEEECCCc
Confidence            268999998874

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=94.57  E-value=0.32  Score=44.12  Aligned_cols=85  Identities=22%  Similarity=0.318  Sum_probs=50.5

Q ss_pred             EEEEECCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHH-HHHcCCC-eeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDK-GEAFGMT-DFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~-~~~lga~-~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      +|.|+|+|.+|...++..... +. ++..+...+.+.+. ...++.. .++       .++    .++  ...+|+|++|
T Consensus         3 rVgIiG~G~iG~~~~~~l~~~~~~-~l~~v~~~~~~~~~~~~~~~~~~~~~-------~d~----~~l--~~~~DvVve~   68 (265)
T PRK13303          3 KVAMIGFGAIGAAVLELLEHDPDL-RVDWVIVPEHSIDAVRRALGEAVRVV-------SSV----DAL--PQRPDLVVEC   68 (265)
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCc-eEEEEEEcCCCHHHHhhhhccCCeee-------CCH----HHh--ccCCCEEEEC
Confidence            689999999999988877665 45 44443322222222 2223221 111       112    222  2368999999


Q ss_pred             CCChHHHHHHHHHhccCCcEEEE
Q 043260          276 TGVASLISEALEATKLGKGKVMA  298 (332)
Q Consensus       276 ~g~~~~~~~~~~~l~~~~G~~v~  298 (332)
                      ++...+.+.+.++|..+ -.++.
T Consensus        69 t~~~~~~e~~~~aL~aG-k~Vvi   90 (265)
T PRK13303         69 AGHAALKEHVVPILKAG-IDCAV   90 (265)
T ss_pred             CCHHHHHHHHHHHHHcC-CCEEE
Confidence            99876777888888765 45543

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.54  E-value=0.25  Score=43.38  Aligned_cols=80  Identities=23%  Similarity=0.277  Sum_probs=48.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HH-H---HHHcCCCe-ee--CCCCCCCchHHHHHHHhcC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR-KD-K---GEAFGMTD-FI--NPDDEPNKSISELVKEMTH-  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~-~~-~---~~~lga~~-v~--~~~~~~~~~~~~~~~~~~~-  265 (332)
                      .++++||+|+ |.+|..++..+...|+ +|+++.++..+ .+ .   ++..+... .+  |..+  .+++.+.+.+... 
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   80 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSD--AESVERAVDEAKAE   80 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4578999998 9999999999999999 78676665442 22 2   22233332 22  3322  2333333333221 


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      -.++|.||.++|.
T Consensus        81 ~~~id~vi~~ag~   93 (248)
T PRK05557         81 FGGVDILVNNAGI   93 (248)
T ss_pred             cCCCCEEEECCCc
Confidence            1258999998874

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.54  E-value=0.51  Score=45.70  Aligned_cols=74  Identities=22%  Similarity=0.306  Sum_probs=52.0

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHh---------cCCCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEM---------THGTG  268 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~---------~~~~g  268 (332)
                      .+|.|+|.|-+|...+..+...|. +|+++++++++.+.+.. |...+.   +   .++.+.+.+.         +....
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~-g~~~~~---e---~~l~~~l~~~~~~g~l~~~~~~~~   75 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINR-GEIHIV---E---PDLDMVVKTAVEGGYLRATTTPEP   75 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHC-CCCCcC---C---CCHHHHHHHHhhcCceeeeccccc
Confidence            579999999999999998888998 99999999999886543 432221   1   2333333221         11225


Q ss_pred             ccEEEEcCCCh
Q 043260          269 VDYGFECTGVA  279 (332)
Q Consensus       269 ~d~vid~~g~~  279 (332)
                      .|+||-|++++
T Consensus        76 aDvvii~vptp   86 (415)
T PRK11064         76 ADAFLIAVPTP   86 (415)
T ss_pred             CCEEEEEcCCC
Confidence            89999999985

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.53  E-value=0.48  Score=44.23  Aligned_cols=38  Identities=26%  Similarity=0.481  Sum_probs=33.8

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHH
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDK  236 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~  236 (332)
                      ++|.|+|+|.+|...++.+...|. +|++.|.+++.++.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~   45 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAA   45 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence            579999999999999999999999 99999999876553

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=94.52  E-value=0.28  Score=43.14  Aligned_cols=99  Identities=16%  Similarity=0.181  Sum_probs=60.1

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCee---------eCCCCCCCch-HHHHHH
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDF---------INPDDEPNKS-ISELVK  261 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v---------~~~~~~~~~~-~~~~~~  261 (332)
                      ...++.+||+.|+|. |.-++.||. .|+ +|+++|.++...+.+ ++.+....         .....   -. +...+.
T Consensus        34 ~~~~~~rvL~~gCG~-G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~---v~~~~~D~~  107 (218)
T PRK13255         34 ALPAGSRVLVPLCGK-SLDMLWLAE-QGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGE---ITIYCGDFF  107 (218)
T ss_pred             CCCCCCeEEEeCCCC-hHhHHHHHh-CCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCc---eEEEECccc
Confidence            456778999999976 777777765 799 999999999887754 33332110         00000   00 000111


Q ss_pred             Hhc--CCCCccEEEEcCCC--------hHHHHHHHHHhccCCcEEEE
Q 043260          262 EMT--HGTGVDYGFECTGV--------ASLISEALEATKLGKGKVMA  298 (332)
Q Consensus       262 ~~~--~~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~  298 (332)
                      ++.  ....||.|+|...-        ...+..+.+.|+++ |++++
T Consensus       108 ~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg-G~~~l  153 (218)
T PRK13255        108 ALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG-CRGLL  153 (218)
T ss_pred             CCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC-CeEEE
Confidence            111  11268999996531        13478889999998 87443

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=94.51  E-value=0.42  Score=43.18  Aligned_cols=102  Identities=16%  Similarity=0.131  Sum_probs=67.0

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHcC-------CC--eeeCCCCCCCchHHHH
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAFG-------MT--DFINPDDEPNKSISEL  259 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~lg-------a~--~v~~~~~~~~~~~~~~  259 (332)
                      +..+++++++||-+|+|. |..+..+++..+. .+|+++|.+++-++.+++..       .+  .++..+          
T Consensus        67 ~~~~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d----------  135 (261)
T PLN02233         67 SWSGAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGD----------  135 (261)
T ss_pred             HHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcc----------
Confidence            345678899999999866 6667777777652 38999999998887765421       11  122111          


Q ss_pred             HHHh-cCCCCccEEEEcCC-----C-hHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          260 VKEM-THGTGVDYGFECTG-----V-ASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       260 ~~~~-~~~~g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +.++ .....||.|+-+.+     + ...+.++.+.|+|+ |+++++-...
T Consensus       136 ~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG-G~l~i~d~~~  185 (261)
T PLN02233        136 ATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG-SRVSILDFNK  185 (261)
T ss_pred             cccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC-cEEEEEECCC
Confidence            1111 12336999986443     2 24678999999998 9998875543

>PLN02823 spermine synthase

Probab=94.50  E-value=0.33  Score=45.54  Aligned_cols=101  Identities=13%  Similarity=0.048  Sum_probs=63.0

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC-C-eee-CCCCC-CCchHHHHHHHhcCCCCccE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM-T-DFI-NPDDE-PNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga-~-~v~-~~~~~-~~~~~~~~~~~~~~~~g~d~  271 (332)
                      ..++|||+|+|. |..+..+++..+..+|++++.+++-.+++++.-. . ..+ +.+-. ...+....+++ . ...+|+
T Consensus       103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~-~~~yDv  179 (336)
T PLN02823        103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-R-DEKFDV  179 (336)
T ss_pred             CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-C-CCCccE
Confidence            457899998865 5556677776666789999999999998877421 0 001 00000 11233344533 2 347999


Q ss_pred             EEEcCCC------------hHHHH-HHHHHhccCCcEEEEEc
Q 043260          272 GFECTGV------------ASLIS-EALEATKLGKGKVMAIG  300 (332)
Q Consensus       272 vid~~g~------------~~~~~-~~~~~l~~~~G~~v~~G  300 (332)
                      ||--...            .+.+. .+.+.|+++ |.++.-.
T Consensus       180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~-Gvlv~q~  220 (336)
T PLN02823        180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG-GIFVTQA  220 (336)
T ss_pred             EEecCCCccccCcchhhccHHHHHHHHHHhcCCC-cEEEEec
Confidence            9875322            12455 678899998 9887543

>PLN00016 RNA-binding protein; Provisional

Probab=94.50  E-value=0.38  Score=45.79  Aligned_cols=98  Identities=14%  Similarity=0.178  Sum_probs=61.5

Q ss_pred             CCCEEEEE----CC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-----------HHHcCCCeeeCCCCCCCchHHHH
Q 043260          196 KGSSVAVF----GL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-----------GEAFGMTDFINPDDEPNKSISEL  259 (332)
Q Consensus       196 ~g~~vlV~----G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-----------~~~lga~~v~~~~~~~~~~~~~~  259 (332)
                      ...+|||+    |+ |.+|..++..+...|. +|++++++..+...           +...|...+. .      ++.+ 
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~-~------D~~d-  121 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW-G------DPAD-  121 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccCchhhhhHhhhcCceEEE-e------cHHH-
Confidence            34679999    98 9999999999988998 99999987754221           1122333222 1      1211 


Q ss_pred             HHHhcCCCCccEEEEcCCCh-HHHHHHHHHhccCC-cEEEEEcCC
Q 043260          260 VKEMTHGTGVDYGFECTGVA-SLISEALEATKLGK-GKVMAIGAA  302 (332)
Q Consensus       260 ~~~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~-G~~v~~G~~  302 (332)
                      +.+.....++|+||++.+.. .....+++.+...+ .++|.++..
T Consensus       122 ~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~  166 (378)
T PLN00016        122 VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSA  166 (378)
T ss_pred             HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccH
Confidence            22222344799999997753 22345566665441 378877754

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.49  E-value=0.41  Score=44.68  Aligned_cols=36  Identities=31%  Similarity=0.634  Sum_probs=33.2

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      .|+++.|+|.|.+|.+.++.++.+|. +|+..+++..
T Consensus       145 ~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~  180 (324)
T COG1052         145 RGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN  180 (324)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC
Confidence            48999999999999999999999999 9999998864

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=94.48  E-value=0.58  Score=40.80  Aligned_cols=100  Identities=16%  Similarity=0.150  Sum_probs=61.5

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      ++++++||=+|+|+ |..+..+++..+. .+|+++|.++..     ......++..+- ......+.+.+......+|+|
T Consensus        49 ~~~~~~VLDlG~Gt-G~~t~~l~~~~~~~~~V~aVDi~~~~-----~~~~v~~i~~D~-~~~~~~~~i~~~~~~~~~D~V  121 (209)
T PRK11188         49 FKPGMTVVDLGAAP-GGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDF-RDELVLKALLERVGDSKVQVV  121 (209)
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHHcCCCceEEEEeccccc-----CCCCcEEEecCC-CChHHHHHHHHHhCCCCCCEE
Confidence            58899988899866 6666667776653 389999987621     111123333322 112223334343344579999


Q ss_pred             EEcC-----CC------------hHHHHHHHHHhccCCcEEEEEcC
Q 043260          273 FECT-----GV------------ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       273 id~~-----g~------------~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      +...     +.            ...+..+.+.|+++ |++++.-.
T Consensus       122 ~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG-G~~vi~~~  166 (209)
T PRK11188        122 MSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG-GSFVVKVF  166 (209)
T ss_pred             ecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEEe
Confidence            9754     22            13568889999998 99988533

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.48  E-value=0.3  Score=44.72  Aligned_cols=40  Identities=18%  Similarity=0.304  Sum_probs=35.1

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE  238 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~  238 (332)
                      ++|.|+|+|.+|...++.+...|. +|++.++++++.+.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~   41 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQ   41 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Confidence            468999999999999998888998 9999999998877653

>PRK03612 spermidine synthase; Provisional

Probab=94.47  E-value=0.22  Score=49.67  Aligned_cols=96  Identities=11%  Similarity=0.149  Sum_probs=64.1

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC-C----------C--eeeCCCCCCCchHHHHHH
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG-M----------T--DFINPDDEPNKSISELVK  261 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg-a----------~--~v~~~~~~~~~~~~~~~~  261 (332)
                      ++.++||++|+|. |..+..+++.-+..+|++++.+++-.+.+++.- .          .  +++.      .+..+.++
T Consensus       296 ~~~~rVL~IG~G~-G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~------~Da~~~l~  368 (521)
T PRK03612        296 ARPRRVLVLGGGD-GLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVN------DDAFNWLR  368 (521)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEE------ChHHHHHH
Confidence            4568899998864 666666776544369999999999888887721 0          1  1121      23334444


Q ss_pred             HhcCCCCccEEEEcCCCh-----------HHHHHHHHHhccCCcEEEEEc
Q 043260          262 EMTHGTGVDYGFECTGVA-----------SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~~-----------~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      +. . ..||+|+-....+           +.++.+.+.|+++ |.++.-.
T Consensus       369 ~~-~-~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg-G~lv~~~  415 (521)
T PRK03612        369 KL-A-EKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD-GLLVVQS  415 (521)
T ss_pred             hC-C-CCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCC-eEEEEec
Confidence            32 2 3799999865432           2467889999998 9988654

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.46  E-value=0.15  Score=45.04  Aligned_cols=82  Identities=16%  Similarity=0.178  Sum_probs=49.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEE-EcCCcchHHH----HHHcCCCe-eeCCCCCCCchHHHHHHHhcCC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIG-IDKNPCRKDK----GEAFGMTD-FINPDDEPNKSISELVKEMTHG-T  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~-~~~~~~~~~~----~~~lga~~-v~~~~~~~~~~~~~~~~~~~~~-~  267 (332)
                      +++++||+|+ |.+|..++..+...|. +|++ ..++.++.+.    .++.+... .+..+-.+.++....+.+.... .
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG   81 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4678999998 9999999999999998 7665 4566555432    23344432 2211111223333333332111 1


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|.+.|.
T Consensus        82 ~id~vi~~ag~   92 (250)
T PRK08063         82 RLDVFVNNAAS   92 (250)
T ss_pred             CCCEEEECCCC
Confidence            58999998874

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.44  E-value=0.21  Score=46.26  Aligned_cols=100  Identities=10%  Similarity=0.099  Sum_probs=59.4

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-CCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-GMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-ga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      .+|+|+|+|++|....-.+...|. +|.++++..++.+..++- |. .+................+.  ...+|+||-|+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl-~i~~~g~~~~~~~~~~~~~~--~~~~D~viv~v   78 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGL-TLVEQGQASLYAIPAETADA--AEPIHRLLLAC   78 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCe-EEeeCCcceeeccCCCCccc--ccccCEEEEEC
Confidence            469999999999988877788898 899999987777766543 43 22111110000000000011  12589999988


Q ss_pred             CChH---HHHHHHHHhccCCcEEEEEcCC
Q 043260          277 GVAS---LISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       277 g~~~---~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      =+.+   .+.++...+.++ ..++.+.+-
T Consensus        79 K~~~~~~al~~l~~~l~~~-t~vv~lQNG  106 (305)
T PRK05708         79 KAYDAEPAVASLAHRLAPG-AELLLLQNG  106 (305)
T ss_pred             CHHhHHHHHHHHHhhCCCC-CEEEEEeCC
Confidence            7643   333444455665 777766543

>PRK05855 short chain dehydrogenase; Validated

Probab=94.40  E-value=0.18  Score=50.38  Aligned_cols=80  Identities=16%  Similarity=0.236  Sum_probs=52.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCC-ee--eCCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMT-DF--INPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~-~v--~~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      .+.++||+|+ |++|..+++.+...|. +|++++++.++.+.+    ++.|.. .+  .|..+  .++..+.+.+... .
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~  390 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSD--ADAMEAFAEWVRAEH  390 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence            4578999998 9999999999989999 899999988776533    233432 22  23322  2333333333211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ..+|++|+++|.
T Consensus       391 g~id~lv~~Ag~  402 (582)
T PRK05855        391 GVPDIVVNNAGI  402 (582)
T ss_pred             CCCcEEEECCcc
Confidence            258999999885

>PRK07775 short chain dehydrogenase; Provisional

Probab=94.39  E-value=0.25  Score=44.63  Aligned_cols=82  Identities=12%  Similarity=0.035  Sum_probs=50.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-eeCCCCCCCchHHHHHHHhcC-CCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FINPDDEPNKSISELVKEMTH-GTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~~~~~~~~~~~~~~~~~~~~-~~g  268 (332)
                      ...+++|+|+ |.+|..+++.+...|+ +|+++.++.++.+..    +..+... ++..+-...+++.+.+.+... -.+
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE   87 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            3468999998 9999999998888999 898888877655422    2334432 221221112333333332211 125


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      .|.+|.++|.
T Consensus        88 id~vi~~Ag~   97 (274)
T PRK07775         88 IEVLVSGAGD   97 (274)
T ss_pred             CCEEEECCCc
Confidence            8999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	332
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		5e-59
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		1e-57
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		1e-56
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		1e-56
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		2e-56
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		2e-56
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		3e-56
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		4e-56
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		1e-55
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		3e-55
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		3e-55
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		2e-52
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		3e-52
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		3e-52
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		1e-51
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		6e-51
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		7e-51
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		7e-51
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		2e-50
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		2e-50
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		3e-50
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		3e-50
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		3e-50
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		6e-50
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		1e-49
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		2e-49
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		1e-48
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-48
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		2e-48
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-48
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		2e-47
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		1e-28
1yqd_A	366	Sinapyl Alcohol Dehydrogenase Complexed With Nadp+		2e-15
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		2e-13
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		5e-13
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		8e-13
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		2e-12
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		3e-12
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		4e-12
1uuf_A	369	Crystal Structure Of A Zinc-Type Alcohol Dehydrogen		7e-12
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		6e-11
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		6e-11
2hcy_A	347	Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi		3e-10
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		2e-09
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		3e-09
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		5e-09
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		9e-09
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		1e-08
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		2e-08
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		3e-08
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		4e-08
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		4e-08
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		9e-08
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		1e-07
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		1e-07
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		2e-07
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		4e-07
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		5e-07
1jvb_A	347	Alcohol Dehydrogenase From The Archaeon Sulfolobus		5e-07
1nto_A	347	N249y Mutant Of Alcohol Dehydrogenase From The Arch		7e-07
1r37_A	347	Alcohol Dehydrogenase From Sulfolobus Solfataricus		7e-07
1zsy_A	357	The Structure Of Human Mitochondrial 2-Enoyl Thioes		8e-07
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		1e-06
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		1e-06
2vcy_A	344	Crystal Structure Of 2-Enoyl Thioester Reductase Of		2e-06
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		2e-06
3ip1_A	404	Structure Of Putative Alcohol Dehydrogenase (Tm_042		1e-05
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		2e-05
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		3e-05
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		5e-05
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		6e-05
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		6e-05
1kol_A	398	Crystal Structure Of Formaldehyde Dehydrogenase Len		1e-04
2b5w_A	357	Crystal Structure Of D38c Glucose Dehydrogenase Mut		1e-04
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		1e-04
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		2e-04
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		6e-04
2cd9_A	366	Sulfolobus Solfataricus Glucose Dehydrogenase 1 - A		7e-04

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  224 bits (571), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 128/326 (39%), Positives = 179/326 (54%), Gaps = 6/326 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPR 69
           ++    A V W   +P  +E++QV PP+A EVR K+LY ++CHTD  +  G  P  LFP 
Sbjct: 23  QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPEGLFPC 82
Query: 70  VLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC--LKYPFTFHGL 127
           VLGHE  G+VES+G+ V E++ GD VIP +  ECREC+ C S   NLC  ++       +
Sbjct: 83  VLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVM 142
Query: 128 MPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGA 187
           M D  SR SI G+ +YH    ST ++Y VV    V K+DP   L     L CG  +G GA
Sbjct: 143 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPTGLGA 202
Query: 188 AWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
            W   KVE                  + A+  GA++IIGID +  + D+ + FG+T+FIN
Sbjct: 203 VWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNFGVTEFIN 262
Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKV 307
           P  E  + I +++ ++T G GVDY FEC G  S++  ALE    G G  + +G A   + 
Sbjct: 263 P-KEHEQPIQQVIVDLTDG-GVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQE 320
Query: 308 PLNFP-AIALGRNLKGTIFGGIKTKS 332
               P  +  GR  KGT FGG K++S
Sbjct: 321 ISTRPFQLVTGRVWKGTAFGGFKSRS 346

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  220 bits (560), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 123/326 (37%), Positives = 179/326 (54%), Gaps = 6/326 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPR 69
           ++    A V +   +P  +E++QV PP+A EVR K+LY ++CHTD  +  G  P  LFP 
Sbjct: 5   QVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPC 64
Query: 70  VLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC--LKYPFTFHGL 127
           +LGHE  G+VES+G+ V E++ GD VIP +  ECREC+ C S   NLC  ++       +
Sbjct: 65  ILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIM 124
Query: 128 MPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGA 187
           M D  SR S+ G+ +YH    ST ++Y VV    V K+DP+  L     L CG  +G GA
Sbjct: 125 MNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGA 184
Query: 188 AWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
            W   KVE                  + A+  GA++IIGID +  + +  + FG+ +F+N
Sbjct: 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVN 244
Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKV 307
           P D  +K I E++ ++T G GVDY FEC G  S++  ALE    G G  + +G A   + 
Sbjct: 245 PKDH-DKPIQEVIVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQE 302
Query: 308 PLNFP-AIALGRNLKGTIFGGIKTKS 332
               P  +  GR  KGT FGG K+++
Sbjct: 303 ISTRPFQLVTGRVWKGTAFGGFKSRT 328

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  216 bits (550), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/317 (41%), Positives = 178/317 (56%), Gaps = 5/317 (1%)
Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPRVLGHEG 75
           A V W  G+P  +EEI+V PPKA EVR K++  ++CHTD  +  G  P   FP +LGHEG
Sbjct: 10  AAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEG 69
Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSR 134
            G+VES+G+ V +LK GD VIP +I +C EC+ C +   NLC K   T   GLMPDG+SR
Sbjct: 70  AGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSR 129
Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
            + +G+ + H    ST +EY VV    V K+DP   L     L CG S+G+GAA    K+
Sbjct: 130 FTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKL 189
Query: 195 EKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
           E                 +   ++ GA++IIG+D N  +  + + FG T+ INP D  +K
Sbjct: 190 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDF-SK 248
Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP-A 313
            I E++ EMT G GVDY FEC G   ++  ALEA   G G  + +G A   +     P  
Sbjct: 249 PIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQ 307
Query: 314 IALGRNLKGTIFGGIKT 330
           +  GR  KGT FGG K+
Sbjct: 308 LVTGRTWKGTAFGGWKS 324

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  216 bits (550), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/317 (41%), Positives = 178/317 (56%), Gaps = 5/317 (1%)
Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPRVLGHEG 75
           A V W  G+P  +EEI+V PPKA EVR K++  ++CHTD  +  G  P   FP +LGHEG
Sbjct: 10  AAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEG 69
Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSR 134
            G+VES+G+ V +LK GD VIP +I +C EC+ C +   NLC K   T   GLMPDG+SR
Sbjct: 70  AGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSR 129
Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
            + +G+ + H    ST +EY VV    V K+DP   L     L CG S+G+GAA    K+
Sbjct: 130 FTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKL 189
Query: 195 EKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
           E                 +   ++ GA++IIG+D N  +  + + FG T+ INP D  +K
Sbjct: 190 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDF-SK 248
Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP-A 313
            I E++ EMT G GVDY FEC G   ++  ALEA   G G  + +G A   +     P  
Sbjct: 249 PIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQ 307
Query: 314 IALGRNLKGTIFGGIKT 330
           +  GR  KGT FGG K+
Sbjct: 308 LVTGRTWKGTAFGGWKS 324

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  216 bits (550), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/317 (41%), Positives = 178/317 (56%), Gaps = 5/317 (1%)
Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPRVLGHEG 75
           A V W  G+P  +EEI+V PPKA EVR K++  ++CHTD  +  G  P   FP +LGHEG
Sbjct: 9   AAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEG 68
Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSR 134
            G+VES+G+ V +LK GD VIP +I +C EC+ C +   NLC K   T   GLMPDG+SR
Sbjct: 69  AGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSR 128
Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
            + +G+ + H    ST +EY VV    V K+DP   L     L CG S+G+GAA    K+
Sbjct: 129 FTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKL 188
Query: 195 EKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
           E                 +   ++ GA++IIG+D N  +  + + FG T+ INP D  +K
Sbjct: 189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDF-SK 247
Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP-A 313
            I E++ EMT G GVDY FEC G   ++  ALEA   G G  + +G A   +     P  
Sbjct: 248 PIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQ 306
Query: 314 IALGRNLKGTIFGGIKT 330
           +  GR  KGT FGG K+
Sbjct: 307 LVTGRTWKGTAFGGWKS 323

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  216 bits (549), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 121/326 (37%), Positives = 176/326 (53%), Gaps = 10/326 (3%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A + W  G P  +EEI+V PPKA EVR +++   +CHTD+ ++      LFP V
Sbjct: 5   KVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDINATDPKKKALFPVV 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-----LKYPFTFH 125
           LGHE  G+VES+G  V   K GD VIP F  +C+ C+ C S + NLC      KYP    
Sbjct: 65  LGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQ 124
Query: 126 GLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGF 185
            LM D +SR + +G+ +YH    S+ ++Y VV    + +VD   +L     + CG+SSG+
Sbjct: 125 ELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGY 184
Query: 186 GAAWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF 245
           GAA    KV                  +   +I GA++II ID N  +  K +A G TD 
Sbjct: 185 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDC 244
Query: 246 INPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGA-ANE 304
           +NP  E +K + +++ E+T G GVDY  +C G A  +  A++ T LG G    +GA  +E
Sbjct: 245 LNP-RELDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDE 302
Query: 305 AKVPLNFPAIALGRNLKGTIFGGIKT 330
             +P     + LGR++ GT FGG K+
Sbjct: 303 MTIPT--VDVILGRSINGTFFGGWKS 326

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  215 bits (547), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 121/322 (37%), Positives = 178/322 (55%), Gaps = 3/322 (0%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W + +P+ +EEI+V PPK  EVR K+L   IC TD    KG  +  FP +
Sbjct: 5   KVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTMVSKFPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
           +GHE  G+VESIG+ V  +K GD VIP F+ +CREC  C +   NLC++   T  G++ D
Sbjct: 65  VGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITGRGVLAD 124
Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
           G++R + +G+ ++H    ST TEY VVD + V K+D +        + CG+S+G+GAA K
Sbjct: 125 GTTRFTCKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVK 184
Query: 191 EFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
             KV+                 +   +  GA++IIGID N  + +K  A G T+ I+P D
Sbjct: 185 TGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKD 244
Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN 310
              K ISE++ EMT G  V Y FE  G    + +AL +  +  G  + +G    AK+   
Sbjct: 245 S-TKPISEVLSEMT-GNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTY 302
Query: 311 FPAIAL-GRNLKGTIFGGIKTK 331
            P +   GR  KG +FGG+K++
Sbjct: 303 DPMLLFTGRTWKGCVFGGLKSR 324

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  214 bits (546), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 121/322 (37%), Positives = 178/322 (55%), Gaps = 3/322 (0%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W + +P+ +EEI+V PPK  EVR K+L   IC TD    KG  +  FP +
Sbjct: 5   KVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTMVSKFPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
           +GHE  G+VESIG+ V  +K GD VIP F+ +CREC  C +   NLC++   T  G++ D
Sbjct: 65  VGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITGRGVLAD 124
Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
           G++R + +G+ ++H    ST TEY VVD + V K+D +        + CG+S+G+GAA K
Sbjct: 125 GTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVK 184
Query: 191 EFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
             KV+                 +   +  GA++IIGID N  + +K  A G T+ I+P D
Sbjct: 185 TGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKD 244
Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN 310
              K ISE++ EMT G  V Y FE  G    + +AL +  +  G  + +G    AK+   
Sbjct: 245 S-TKPISEVLSEMT-GNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTY 302
Query: 311 FPAIAL-GRNLKGTIFGGIKTK 331
            P +   GR  KG +FGG+K++
Sbjct: 303 DPMLLFTGRTWKGCVFGGLKSR 324

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  213 bits (542), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/317 (41%), Positives = 177/317 (55%), Gaps = 5/317 (1%)
Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPRVLGHEG 75
           A V W  G+P  +EEI+V PPKA EVR K++  ++CHTD  +  G  P   FP +LGH G
Sbjct: 9   AAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLG 68
Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSR 134
            G+VES+G+ V +LK GD VIP +I +C EC+ C +   NLC K   T   GLMPDG+SR
Sbjct: 69  AGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSR 128
Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
            + +G+ + H    ST +EY VV    V K+DP   L     L CG S+G+GAA    K+
Sbjct: 129 FTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKL 188
Query: 195 EKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
           E                 +   ++ GA++IIG+D N  +  + + FG T+ INP D  +K
Sbjct: 189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDF-SK 247
Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP-A 313
            I E++ EMT G GVDY FEC G   ++  ALEA   G G  + +G A   +     P  
Sbjct: 248 PIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQ 306
Query: 314 IALGRNLKGTIFGGIKT 330
           +  GR  KGT FGG K+
Sbjct: 307 LVTGRTWKGTAFGGWKS 323

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  212 bits (539), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 120/326 (36%), Positives = 175/326 (53%), Gaps = 10/326 (3%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A + W  G P  +EEI+V PPKA EVR +++   +C TD+ ++      LFP V
Sbjct: 5   KVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVV 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-----LKYPFTFH 125
           LGHE  G+VES+G  V   K GD VIP F  +C+ C+ C S + NLC      KYP    
Sbjct: 65  LGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQ 124
Query: 126 GLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGF 185
            LM D +SR + +G+ +YH    S+ ++Y VV    + +VD   +L     + CG+SSG+
Sbjct: 125 ELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGY 184
Query: 186 GAAWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF 245
           GAA    KV                  +   +I GA++II ID N  +  K +A G TD 
Sbjct: 185 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDC 244
Query: 246 INPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGA-ANE 304
           +NP  E +K + +++ E+T G GVDY  +C G A  +  A++ T LG G    +GA  +E
Sbjct: 245 LNP-RELDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDE 302
Query: 305 AKVPLNFPAIALGRNLKGTIFGGIKT 330
             +P     + LGR++ GT FGG K+
Sbjct: 303 MTIPT--VDVILGRSINGTFFGGWKS 326

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  211 bits (538), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 126/328 (38%), Positives = 180/328 (54%), Gaps = 11/328 (3%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTD--VLSSKGFPLPLFP 68
           K+    A + W  G+P  +EE++V PPKA EVR +++  S+CHTD  V+ SK F    FP
Sbjct: 7   KVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSK-FEGLAFP 65
Query: 69  RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-----LKYPFT 123
            ++GHE  G+VESIG  V  +K GD VIP +   CR+C+ C S + NLC     LK P +
Sbjct: 66  VIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPAS 125
Query: 124 FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSS 183
              LM D +SR + +G+ +YH F  ST ++Y VV    + K+D   +L     L CG+S+
Sbjct: 126 DQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFST 185
Query: 184 GFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT 243
           G+GAA    KV                  +   +  GA++IIGID N  +  K +A G T
Sbjct: 186 GYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGAT 245
Query: 244 DFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN 303
           D +NP D  +K I E++ E+T G GVD+  +C G +  +  AL+ T  G G    IG A 
Sbjct: 246 DCLNPRDL-HKPIQEVIIELTKG-GVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAA 303
Query: 304 EAKVPLNFP-AIALGRNLKGTIFGGIKT 330
            +K    FP  + +GR + GT FGG K+
Sbjct: 304 GSKGLTVFPEELIIGRTINGTFFGGWKS 331

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/323 (36%), Positives = 172/323 (53%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSS-KGFPLPLFPR 69
           K+    A V W   +P  +EEI+V+ P A E+R K++   +CHTD+    +G     FP 
Sbjct: 5   KVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPV 64
Query: 70  VLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLK-YPFTFHGLM 128
           VLGHEG G+VES+G  V E + G+ VIP FI +C EC  C S   N C+K +      +M
Sbjct: 65  VLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVM 124
Query: 129 PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAA 188
               +R + +G+K+      ST ++Y VV+   V K+DPS  L     L CG S+GFGAA
Sbjct: 125 SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAA 184
Query: 189 WKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP 248
               KVE                 +      GA +II +D NP + +K + FG TDF+NP
Sbjct: 185 VNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNP 244
Query: 249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVP 308
           +D  ++ IS+++ +MT+G GVD+  EC G   ++  ALE+   G G  + +G  +   V 
Sbjct: 245 NDH-SEPISQVLSKMTNG-GVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVA 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
                +  GR  KG++FGG K K
Sbjct: 303 TRPIQLIAGRTWKGSMFGGFKGK 325

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  202 bits (513), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/322 (36%), Positives = 173/322 (53%), Gaps = 3/322 (0%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W + +P+ +EE++V PPKA EVR KM+ A IC +D     G  +   P +
Sbjct: 5   KVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
            GHE  G+VESIG+ V  ++ GD VIP FI +C +C  C     NLCLK      G M D
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLKNLSMPRGTMQD 124
Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
           G+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A K
Sbjct: 125 GTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVK 184
Query: 191 EFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
             KV +                +   +  GAA+IIG+D N  +  K +  G T+ +NP D
Sbjct: 185 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQD 244
Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VPL 309
              K I E++ EM++G GVD+ FE  G    +  AL   +   G  + +G   +++ + +
Sbjct: 245 Y-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVPPDSQNLSM 302
Query: 310 NFPAIALGRNLKGTIFGGIKTK 331
           N   +  GR  KG IFGG K+K
Sbjct: 303 NPMLLLSGRTWKGAIFGGFKSK 324

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  202 bits (513), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/322 (36%), Positives = 173/322 (53%), Gaps = 3/322 (0%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W + +P+ +EE++V PPKA EVR KM+ A IC +D     G  +   P +
Sbjct: 5   KVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
            GHE  G+VESIG+ V  ++ GD VIP FI +C +C  C     NLCLK      G M D
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLKNLSMPRGTMQD 124
Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
           G+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A K
Sbjct: 125 GTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVK 184
Query: 191 EFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
             KV +                +   +  GAA+IIG+D N  +  K +  G T+ +NP D
Sbjct: 185 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQD 244
Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VPL 309
              K I E++ EM++G GVD+ FE  G    +  AL   +   G  + +G   +++ + +
Sbjct: 245 Y-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVPPDSQNLSM 302
Query: 310 NFPAIALGRNLKGTIFGGIKTK 331
           N   +  GR  KG IFGG K+K
Sbjct: 303 NPMLLLSGRTWKGAIFGGFKSK 324

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/323 (35%), Positives = 171/323 (52%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W E +P+ +EE++V PPKA EVR KM+   IC +D     G  +   P +
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDQVVSGTLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMP 129
            GHE  G+VESIG+ V  ++ GD VIP F  +C +C  C     N CLK   +   G M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
           K  KV +                +   +  GAA+IIG+D N  R  K +  G T+ +NP 
Sbjct: 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKEVGATECVNPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++ EM++G GVD+ FE  G    +  AL   +   G  + +G   +++ + 
Sbjct: 245 DY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG IFGG K+K
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSK 325

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  197 bits (501), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 171/323 (52%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W E +P+ +EE++V PPKA EVR KM+   IC +D     G  +   P +
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMP 129
            GHE  G+VESIG+ V  ++ GD VIP F  +C +C  C     N CLK   +   G M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
           K  KV +                +   +  GAA+IIG+D N  +  K +  G T+ +NP 
Sbjct: 185 KVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++ EM++G GVD+ FE  G    +  AL   +   G  + +G   +++ + 
Sbjct: 245 DY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG IFGG K+K
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSK 325

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  197 bits (501), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 171/323 (52%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W E +P+ +EE++V PPKA EVR KM+   IC +D     G  +   P +
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMP 129
            GHE  G+VESIG+ V  ++ GD VIP F  +C +C  C     N CLK   +   G M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
           K  KV +                +   +  GAA+IIG+D N  +  K +  G T+ +NP 
Sbjct: 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++ EM++G GVD+ FE  G    +  AL   +   G  + +G   +++ + 
Sbjct: 245 DY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG IFGG K+K
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSK 325

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  197 bits (501), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 171/323 (52%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W E +P+ +EE++V PPKA EVR KM+   IC +D     G  +   P +
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMP 129
            GHE  G+VESIG+ V  ++ GD VIP F  +C +C  C     N CLK   +   G M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
           K  KV +                +   +  GAA+IIG+D N  +  K +  G T+ +NP 
Sbjct: 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++ EM++G GVD+ FE  G    +  AL   +   G  + +G   +++ + 
Sbjct: 245 DY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG IFGG K+K
Sbjct: 303 MNPMLLLSGRTWKGCIFGGFKSK 325

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 170/323 (52%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W E +P+ +EE++V PPKA EVR KM+   IC +D     G  +   P +
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMP 129
            GHE  G+VESIG+ V  ++ GD VIP F  +C +C  C     N CLK   +   G M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
           K  KV +                +   +  GAA+IIG+D N  +  K +  G T+ +NP 
Sbjct: 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++ EM++G GVD+ FE  G    +  AL   +   G  +  G   +++ + 
Sbjct: 245 DY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVITGVPPDSQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG IFGG K+K
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSK 325

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/323 (35%), Positives = 170/323 (52%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W E +P+ +EE++V PPKA EVR KM+   IC +D     G  +   P +
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMP 129
            GHE  G+VESIG+ V  ++ GD VIP F  +C +C  C     N CLK   +   G M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
           K  KV +                +   +  GAA+IIG+D N  +  K +  G T+ +NP 
Sbjct: 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++ EM++G GVD+ FE  G    +  AL   +   G  + +    +++ + 
Sbjct: 245 DY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVAVTPDSQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG IFGG K+K
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSK 325

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 114/323 (35%), Positives = 171/323 (52%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W E +P+ +EE++V PPKA EVR KM+   IC +D     G  +   P +
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMP 129
            GHE  G+VESIG+ V  ++ GD VIP +  +C +C  C     N CLK   +   G M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
           K  KV +                +   +  GAA+IIG+D N  +  K +  G T+ +NP 
Sbjct: 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++ EM++G GVD+ FE  G    +  AL   +   G  + +G   +++ + 
Sbjct: 245 DY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG IFGG K+K
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSK 325

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 114/323 (35%), Positives = 171/323 (52%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W E +P+ +EE++V PPKA EVR KM+   IC +D     G  +   P +
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMP 129
            GHE  G+VESIG+ V  ++ GD VIP +  +C +C  C     N CLK   +   G M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
           K  KV +                +   +  GAA+IIG+D N  +  K +  G T+ +NP 
Sbjct: 185 KVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++ EM++G GVD+ FE  G    +  AL   +   G  + +G   +++ + 
Sbjct: 245 DY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG IFGG K+K
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSK 325

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 170/323 (52%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W E +P+ +EE++V PPKA EVR KM+   IC +D     G  +   P +
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMP 129
            GHE  G+VESIG+ V  ++ GD VIP F  +C +C  C     N CLK   +   G M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
           K  KV +                +   +  GAA+IIG+D N  +  K +  G T+ +NP 
Sbjct: 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++ EM++G GVD+ FE  G    +  AL   +   G  +  G   +++ + 
Sbjct: 245 DY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVISGVPPDSQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG IFGG K+K
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSK 325

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  194 bits (493), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 114/323 (35%), Positives = 170/323 (52%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W E +P+ +EE++V PPKA EVR KM+   IC +D     G  +   P +
Sbjct: 5   KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMP 129
            GHE  G+VESIG+ V  ++ GD VIP    +C +C  C     N CLK   +   G M 
Sbjct: 65  AGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+SR + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
           K  KV +                +   +  GAA+IIG+D N  +  K +  G T+ +NP 
Sbjct: 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++ EM++G GVD+ FE  G    +  AL   +   G  + +G   +++ + 
Sbjct: 245 DY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG IFGG K+K
Sbjct: 303 MNPMLLLSGRTWKGAIFGGFKSK 325

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/323 (34%), Positives = 168/323 (52%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W   +P+ +E+++V PPKA EVR KM+   ICHTD     G  +   P +
Sbjct: 5   KVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICHTDDHVVSGNLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMP 129
           LGHE  G+VES+G+ V  +K GD VIP F  +C +C  C +  +N CLK       G + 
Sbjct: 65  LGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+ R + RG+ ++H    ST ++Y VVD N V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
              KV                  +   +  GAA+II +D N  +  K +  G T+ INP 
Sbjct: 185 NVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++KEMT G GVD+ FE  G    +  +L       G  + +G    ++ + 
Sbjct: 245 DY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG ++GG K+K
Sbjct: 303 INPMLLLTGRTWKGAVYGGFKSK 325

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  192 bits (489), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 169/323 (52%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W   +P+ +EE++V PPKA EVR KM+ A IC +D     G  +   P +
Sbjct: 5   KVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMP 129
           LGHE  G+VES+G+ V  +K GD VIP F  +C +C  C +  +N CLK       G + 
Sbjct: 65  LGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTLQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+ R +  G+ ++H    ST ++Y VVD N V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
           K  KV                  +   +  GAA+II +D N  +  K +  G T+ INP 
Sbjct: 185 KVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++KEMT G GVD+ FE  G    +  +L       G  + +G   +++ + 
Sbjct: 245 DY-KKPIQEVLKEMTDG-GVDFSFEVIGQLDTMMASLLCCHEACGTSVIVGVPPDSQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG IFGG K+K
Sbjct: 303 INPMLLLTGRTWKGAIFGGFKSK 325

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  189 bits (481), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 167/323 (51%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W   +P+ +E+++V PPKA EVR KM+   IC TD     G  +   P +
Sbjct: 5   KVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMP 129
           LGHE  G+VES+G+ V  +K GD VIP F  +C +C  C +  +N CLK       G + 
Sbjct: 65  LGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+ R + RG+ ++H    ST ++Y VVD N V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
              KV                  +   +  GAA+II +D N  +  K +  G T+ INP 
Sbjct: 185 NVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++KEMT G GVD+ FE  G    +  +L       G  + +G    ++ + 
Sbjct: 245 DY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG ++GG K+K
Sbjct: 303 INPMLLLTGRTWKGAVYGGFKSK 325

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 167/323 (51%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W   +P+ +E+++V PPKA EVR KM+   IC TD     G  +   P +
Sbjct: 5   KVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMP 129
           LGHE  G+VES+G+ V  +K GD VIP F  +C +C  C +  +N CLK       G + 
Sbjct: 65  LGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+ R + RG+ ++H    ST ++Y VVD N V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
              KV                  +   +  GAA+II +D N  +  K +  G T+ INP 
Sbjct: 185 NVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++KEMT G GVD+ FE  G    +  +L       G  + +G    ++ + 
Sbjct: 245 DY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG ++GG K+K
Sbjct: 303 INPMLLLTGRTWKGAVYGGFKSK 325

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 114/323 (35%), Positives = 168/323 (52%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W   +P+ +EE++V PPKA EVR KM+   IC TD     G  +   P +
Sbjct: 5   KVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMP 129
           LGHE  G+VES+G+ V  +K GD VIP  I +C +C  C +  +N CLK   +   G + 
Sbjct: 65  LGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNPQGTLQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+SR + R + ++H    ST ++Y VVD N V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
              KV                  +   +  GAA+II +D N  +  K +  G T+ INP 
Sbjct: 185 NVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++KEMT G GVD+ FE  G    +  +L       G  + +G   +++ + 
Sbjct: 245 DY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG I GG K+K
Sbjct: 303 MNPMLLLTGRTWKGAILGGFKSK 325

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  189 bits (479), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 167/323 (51%), Gaps = 4/323 (1%)
Query: 11  KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           K+    A V W   +P+ +E+++V PPKA EVR KM+   IC TD     G  +   P +
Sbjct: 5   KVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICGTDDHVVSGNLVTPLPVI 64
Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMP 129
           LGHE  G+VES+G+ V  +K GD VIP F  +C +C  C +  +N CLK       G + 
Sbjct: 65  LGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQ 124
Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW 189
           DG+ R + RG+ ++H    ST ++Y VVD N V K+D +  L     + CG+S+G+G+A 
Sbjct: 125 DGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAV 184
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
              KV                  +   +  GAA+II +D N  +  K +  G T+ INP 
Sbjct: 185 NVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQ 244
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK-VP 308
           D   K I E++KEMT G GVD+ FE  G    +  +L       G  + +G    ++ + 
Sbjct: 245 DY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLS 302
Query: 309 LNFPAIALGRNLKGTIFGGIKTK 331
           +N   +  GR  KG ++GG K+K
Sbjct: 303 INPMLLLTGRTWKGAVYGGFKSK 325

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/315 (37%), Positives = 169/315 (53%), Gaps = 5/315 (1%)
Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A V W   +P  +E I V PPKA EVR K+L + IC +D    K      FP +LGHE V
Sbjct: 12  AAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFPVILGHEAV 71
Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFH-GLMPDGSSRM 135
           G+VESIG  V  +K GD VIP F+ +C  C  C S  +N C K       GLM D +SR 
Sbjct: 72  GVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRF 131
Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
           + RG+ +Y++   ST TEY VV    V K+DP   L  +  + CG+++G+GAA    KV 
Sbjct: 132 TCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVT 190
Query: 196 KXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS 255
                            +   +  GA++IIG+  +  +  K    G T+ +NP D  +K 
Sbjct: 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDY-DKP 249
Query: 256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN-EAKVPLNFPAI 314
           I E++ E T+G GVDY  EC G    +  AL++T  G G  + +G A+   ++PL+   +
Sbjct: 250 IYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLL 308
Query: 315 ALGRNLKGTIFGGIK 329
             GR+LKG++FGG K
Sbjct: 309 LTGRSLKGSVFGGFK 323

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 147/300 (49%), Gaps = 15/300 (5%)
Query: 7   ISFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTD-VLSSKGFPLP 65
           +S LK   AA   C  +G  ++++ +++  P+  EV  K++   +CHTD ++  + +P+P
Sbjct: 1   MSELKDIIAAVTPC--KGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP 58
Query: 66  LFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLK-YPFTF 124
           L P VLGHEG G++E+IG  V EL+ GD V+ ++ G C +C  C +     C + +   F
Sbjct: 59  L-PAVLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNF 116
Query: 125 HGLMPDGSSRMSIRGQKLY--HIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYS 182
            G   +G+  +    Q +   H F  S+   Y +   N  VKV   + + L G L CG  
Sbjct: 117 SGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQ 176
Query: 183 SGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGM 242
           +G GA     KV                  +  A++ GA+ II +D    R +  +  G 
Sbjct: 177 TGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA 236
Query: 243 TDFINPD-DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGA 301
           T  IN    +P  +I    KE+T G GV++  E TG   ++ + ++A  +  GK+  +GA
Sbjct: 237 THVINSKTQDPVAAI----KEITDG-GVNFALESTGSPEILKQGVDALGI-LGKIAVVGA 290

>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 32/295 (10%)
Query: 41  EVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPT 98
           +VRFK+LY  +CH+D+ S K  +   ++P V GHE VG V  +G +VK++  GD V +  
Sbjct: 43  DVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGC 102
Query: 99  FIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVD 158
            +G C  CE+C +++ N C K   T+  +  DG+              T    + +MV +
Sbjct: 103 LVGACHSCESCANDLENYCPKMILTYASIYHDGT-------------ITYGGYSNHMVAN 149
Query: 159 ANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDRARI 218
             Y+++   ++ L     L C   + + +  K F +++                  +   
Sbjct: 150 ERYIIRFPDNMPLDGGAPLLCAGITVY-SPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK 208
Query: 219 QGAAKIIGIDKNPCRKDKG-EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG 277
              +K+  I  +P +K++  + FG   F+   D+         ++M    G   G   T 
Sbjct: 209 AFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQ---------EQMQAAAGTLDGIIDTV 259
Query: 278 VASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL--GRNL-KGTIFGGIK 329
            A      L       GK++ +GA  +   PL  PA +L  GR +  G+  GG+K
Sbjct: 260 SAVHPLLPLFGLLKSHGKLILVGAPEK---PLELPAFSLIAGRKIVAGSGIGGMK 311

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 23/149 (15%)
Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPL-PLFPRVLGHE 74
           A V    G P  ++E+ V  P   +V+ K+  + +CHTD+ ++ G +P+ P  P + GHE
Sbjct: 5   AAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHE 64
Query: 75  GVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSS 133
           GVG V ++G  V  +KEGD V +P     C  CE+C      LC K   T +        
Sbjct: 65  GVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGY-------- 116
Query: 134 RMSIRGQKLYHIFTCSTMTEYMVVDANYV 162
             S+ G             EY+V D NYV
Sbjct: 117 --SVNG----------GYGEYVVADPNYV 133

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 23/149 (15%)
Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPL-PLFPRVLGHE 74
           A V    G P ++EE++V  P   +V  K+  + +CHTD+ +++G +P+ P  P + GHE
Sbjct: 9   AAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHE 68
Query: 75  GVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSS 133
           GVG V ++G  V  +KEGD V IP     C  CE+C +    LC     T +        
Sbjct: 69  GVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGY-------- 120
Query: 134 RMSIRGQKLYHIFTCSTMTEYMVVDANYV 162
             S+ G             EY++ D NYV
Sbjct: 121 --SVNG----------GYAEYVLADPNYV 137

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 26/179 (14%)
Query: 8   SFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPL-P 65
           S  K   AA V  +G+  P  ++E+ +  P   +++  +  + +CHTD+ +++G +P+ P
Sbjct: 21  SMAKTMKAAVVRAFGK--PLTIDEVPIPQPGPGQIQVAIQASGVCHTDLHAAEGDWPVKP 78
Query: 66  LFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTF 124
             P + GHEGVG V ++G  VK +KEGD V IP     C  C +C      LC +   T 
Sbjct: 79  NPPFIPGHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCEEQLNTG 138
Query: 125 HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS-LAGFLSCGYS 182
           +          S+ G             EY+V D N+V  +  +ID + +A  L  G +
Sbjct: 139 Y----------SVNG----------GFAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVT 177

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 121/299 (40%), Gaps = 30/299 (10%)
Query: 31  EIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELK 90
           E ++   K  E    M Y  +CHTD+  + G        VLGHEG+G+V+ IG +V  L+
Sbjct: 18  EKELRAIKPNEALLDMEYCGVCHTDLHVAAGDYGNKAGTVLGHEGIGIVKEIGADVSSLQ 77
Query: 91  EGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCS 149
            GD V +  F   C  CE C S     C +      G   DG                  
Sbjct: 78  VGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNA--GYSVDGG----------------- 118
Query: 150 TMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXX 209
            M E  +V A+Y VKV   +D   A  ++C   + +  A K   V+              
Sbjct: 119 -MAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTY-KAIKVSGVKPGDWQVIFGAGGLG 176
Query: 210 XXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD-EPNKSISELVKEMTHGTG 268
              +  A+    AK+I +D N  + +  +  G    IN  D  P   I    K++T G G
Sbjct: 177 NLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVIINSGDVNPVDEI----KKITGGLG 232
Query: 269 VDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG 326
           V     C  VA +  E   A+    GK++A+   N  ++ L+ P +   G  + G++ G
Sbjct: 233 VQSAIVCA-VARIAFEQAVASLKPMGKMVAVALPN-TEMTLSVPTVVFDGVEVAGSLVG 289

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 13/162 (8%)
Query: 21  WGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMV 79
           + + E +K  +         +V   +LYA ICH+D+ S+   +   ++P + GHE  G++
Sbjct: 11  FSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGII 70
Query: 80  ESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIR 138
           + +G  VK+ K GD+V +  F+  C+ C+ C       C K  FT+  L     +   + 
Sbjct: 71  KEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMG 130
Query: 139 GQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCG 180
           G            +  +VVD NYV+ VD +  L     L C 
Sbjct: 131 G-----------YSNNIVVDENYVISVDKNAPLEKVAPLLCA 161

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 121/299 (40%), Gaps = 30/299 (10%)
Query: 31  EIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELK 90
           E ++   K  E    M Y  +CHTD+  + G        VLGHEG+G+V+ IG +V  L+
Sbjct: 18  EKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGNKAGTVLGHEGIGIVKEIGADVSSLQ 77
Query: 91  EGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCS 149
            GD V +  F   C  CE C S     C +      G   DG                  
Sbjct: 78  VGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNA--GYSVDGG----------------- 118
Query: 150 TMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXX 209
            M E  +V A+Y VKV   +D   A  ++C   + +  A K   V+              
Sbjct: 119 -MAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTY-KAIKVSGVKPGDWQVIFGAGGLG 176
Query: 210 XXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD-EPNKSISELVKEMTHGTG 268
              +  A+    AK+I +D N  + +  +  G    IN  D  P   I    K++T G G
Sbjct: 177 NLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEI----KKITGGLG 232
Query: 269 VDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG 326
           V     C  VA +  E   A+    GK++A+   N  ++ L+ P +   G  + G++ G
Sbjct: 233 VQSAIVCA-VARIAFEQAVASLKPMGKMVAVAVPN-TEMTLSVPTVVFDGVEVAGSLVG 289

>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 131/317 (41%), Gaps = 29/317 (9%)
Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEG 75
           AV  +   +P +  +I    P   +V+ ++ Y  +CH+D+   +  +   ++P V GHE 
Sbjct: 25  AVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEI 84
Query: 76  VGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSR 134
           VG V ++GD+V++   GD+V +   +  C+ CE C   + N C     T++   PD    
Sbjct: 85  VGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGH 144
Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKV-DPSIDLSLAGFLSCGYSSGFGAAWKEFK 193
                       T    ++ +VV   YV+++  P   L+    L C   + + +  + ++
Sbjct: 145 ------------TLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTY-SPLRHWQ 191
Query: 194 VEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN 253
                              +  A   G A ++    +  +++  +A G  + +N     +
Sbjct: 192 AGPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKALGADEVVN-----S 245
Query: 254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGK-GKVMAIGA-ANEAKVPLNF 311
           ++  E+   +       + F    VA+  +     T L + G +  +GA A   K P  F
Sbjct: 246 RNADEMAAHLK-----SFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVF 300
Query: 312 PAIALGRNLKGTIFGGI 328
             I   R + G++ GGI
Sbjct: 301 NLIMKRRAIAGSMIGGI 317

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 23/166 (13%)
Query: 25  EPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPL-PLFPRVLGHEGVGMVESI 82
           EP K++E++       EV  ++    +CHTD+ ++ G +P+ P  P + GHEGVG+VE +
Sbjct: 11  EPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEV 70
Query: 83  GDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQK 141
           G  V  LK GD V IP     C  C+ C S    LC                      QK
Sbjct: 71  GPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC--------------------EHQK 110
Query: 142 LYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGA 187
                      EY    A+YVVK+  ++    A  + C   + + A
Sbjct: 111 NAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKA 156

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 23/166 (13%)
Query: 25  EPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPL-PLFPRVLGHEGVGMVESI 82
           EP K++E++       EV  ++    +CHTD+ ++ G +P+ P  P + GHEGVG+VE +
Sbjct: 11  EPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEV 70
Query: 83  GDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQK 141
           G  V  LK GD V IP     C  C+ C S    LC                      QK
Sbjct: 71  GPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC--------------------EHQK 110
Query: 142 LYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGA 187
                      EY    A+YVVK+  ++    A  + C   + + A
Sbjct: 111 NAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKA 156

>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 30  EEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPL-FPRVLGHEGVGMVESIGDEVK 87
           ++I V  PKA E+   + Y+ +CHTD+ +  G +PLP+  P V GHEG G+V  +G+ VK
Sbjct: 21  KDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVK 80
Query: 88  ELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
             K GD   I    G C  CE C  E+ N          G   DGS
Sbjct: 81  GWKIGDYAGIKWLNGSCMACEYC--ELGNESNCPHADLSGYTHDGS 124

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 17  AVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFP--RVLG 72
           AVV    G P   +V ++ V  P   EVR ++  A++ H DV   KG   P  P   VLG
Sbjct: 3   AVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLG 62
Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY 120
            +G G+V+++G  V+    GD V+      C  CE C +   NLC +Y
Sbjct: 63  ADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRY 110

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 116/290 (40%), Gaps = 31/290 (10%)
Query: 27  WKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLF----PRVLGHEGVGMVESI 82
            ++E+  +  PK  EV  +M Y  IC +DV   +   +  F    P V+GHE  G V  +
Sbjct: 16  LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKV 75
Query: 83  GDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKL 142
           G  VK LK+GD V       CR C+ C     NLC     TF    PD  +         
Sbjct: 76  GKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPD--LTFCATPPDDGN--------- 124
Query: 143 YHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKXXXXXX 202
                   +  Y V  A++  K+  ++ L     L    S G   A +   V+       
Sbjct: 125 --------LARYYVHAADFCHKLPDNVSLEEGALLE-PLSVGV-HACRRAGVQLGTTVLV 174
Query: 203 XXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFG--MTDFINPDDEPNKSISELV 260
                     +  A+  GA  ++   ++P R +  +  G  +T  ++P  E   SI E +
Sbjct: 175 IGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERI 233
Query: 261 KEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPL 309
           +    G   +   +C+G    I+  +  T+ G G +M +G  ++   VPL
Sbjct: 234 RSAI-GDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQMVTVPL 281

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 130/327 (39%), Gaps = 33/327 (10%)
Query: 15  AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG----FPLPLFPRV 70
           A A+V     +P   +E ++       +  ++L A +C +DV   +G     PLP+   +
Sbjct: 18  AHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPI---I 74
Query: 71  LGHEGVGMVESIGDEVKEL-----KEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFH 125
           LGHEG G V  +  E ++L     K GD+++      C EC  C         K P+   
Sbjct: 75  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVS------KEPY--- 125
Query: 126 GLMPDGSSRMSIRGQKLY-HIFTCSTMTEYMVVDANY-VVKVDPSIDLSLAGFLSCGYSS 183
            L P+       RG   Y H+  C   + ++V+D    V+KV    DL +     C  ++
Sbjct: 126 -LCPNRKVYGINRGCSEYPHLRGC--YSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGAT 182
Query: 184 GFGA--AWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFG 241
            + A   + E    K                +  AR  GA  +I I  +P R    E  G
Sbjct: 183 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVI--ARSLGAENVIVIAGSPNRLKLAEEIG 240
Query: 242 MTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGA 301
               +N  +   +   + + ++THG G D+  E TG +  + E  E  + G    +A  A
Sbjct: 241 ADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVA 300
Query: 302 ANEAKVPLNFPAIALGRNLKGTIFGGI 328
             +  VP       +   LK   F GI
Sbjct: 301 VPQDPVPFKVYEWLV---LKNATFKGI 324

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 25/226 (11%)
Query: 70  VLGHEGVGMVESIGDEVKELKEGD-IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM 128
           +LGHE VG V  +G EVK+ K GD +++P    + R  E          ++  F  H   
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLE----------VQAGFQQH--- 102
Query: 129 PDGSSRMSIRGQKLYHIFTCSTMTEYM-VVDANYVVKVDP-SIDLSLAGFLSCGYSSGFG 186
               S   + G K  + F      EY  V DA+  + + P  + L  A  ++   ++GF 
Sbjct: 103 ----SNGMLAGWKFSN-FKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFH 157
Query: 187 AAWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI 246
            A +   +E                 +  A+++GA +II +   P   D  + +G TD +
Sbjct: 158 GA-ELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIV 216
Query: 247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLG 292
           N  D P   I   +  +T G GVD      G A +++ A++  K G
Sbjct: 217 NYKDGP---IESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPG 259

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 106/287 (36%), Gaps = 30/287 (10%)
Query: 29  VEEIQVEPPKATEVRFKMLYASICHTDVL------SSKGFPLPLFPRVLGHEGVGMVESI 82
           V +I    P   E+  K+  A +CH+D+       +   + LPL    LGHEGVG V  +
Sbjct: 15  VVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPL---TLGHEGVGTVAEL 71
Query: 83  GDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKL 142
           G+ V     GD V       C  C  C     N C +      G+ P G           
Sbjct: 72  GEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADL--GITPPG----------- 118
Query: 143 YHIFTCSTMTEYMVVD-ANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKXXXXX 201
             + +  +M EYM+VD A ++V +     ++ A     G +     +     +       
Sbjct: 119 --LGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAV 176
Query: 202 XXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVK 261
                      +   R   AA++I +D +  R       G    +    +     ++ ++
Sbjct: 177 VIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAV----KSGAGAADAIR 232
Query: 262 EMTHGTGVDYGFECTGVASLISEALEATKL-GKGKVMAIGAANEAKV 307
           E+T G G    F+  G  S I  A +   + G   V+ I A   AKV
Sbjct: 233 ELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKV 279

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 110/262 (41%), Gaps = 26/262 (9%)
Query: 70  VLGHEGVGMVESIGDEVKELKEGD-IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM 128
           +LGHE VG V  +G EVK+ K GD +V+P    + R  E          ++  +  H   
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSE----------VQRGYHQH--- 102
Query: 129 PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS-IDLSLAGFLSCGYSSGFGA 187
               S   + G K  ++        + V DA+  +   P  I L  A  +    ++GF  
Sbjct: 103 ----SGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHG 158
Query: 188 AWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
           A +   +E                 +  A+++GA +II +   P   D  + +G TD +N
Sbjct: 159 A-ELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVN 217
Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKV 307
             D P   I   +  +T G GVD      G A +++ A++  K G G +  +    E +V
Sbjct: 218 YKDGP---IESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPG-GTIANVNYFGEGEV 273
Query: 308 PLNFPAIALGRNL-KGTIFGGI 328
            L+ P +  G  +   TI GG+
Sbjct: 274 -LDVPRLEWGCGMAHKTIKGGL 294

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 118/273 (43%), Gaps = 32/273 (11%)
Query: 28  KVEEIQVEPPKAT--EVRFKMLYASICHTDVLSSKGFPLPLFPR---VLGHEGVGMVESI 82
           K+  I+ E P A   +   + L  S C +D+ +   F   L  R   +LGHE VG V  +
Sbjct: 11  KLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTV--FEGALGDRKNMILGHEAVGEVVEV 68
Query: 83  GDEVKELKEGD-IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQK 141
           G EVK+ K GD +++P    + R  E          ++  F  H       S   + G K
Sbjct: 69  GSEVKDFKPGDRVIVPCTTPDWRSLE----------VQAGFQQH-------SNGMLAGWK 111
Query: 142 LYHIFTCSTMTEYM-VVDANYVVKVDP-SIDLSLAGFLSCGYSSGFGAAWKEFKVEKXXX 199
             + F      EY  V DA+  + + P  + L  A  ++   ++GF  A +   +E    
Sbjct: 112 FSN-FKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIEMGSS 169
Query: 200 XXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISEL 259
                        +  A+++GA +IIG+   P   +  + +G TD +N     N  I + 
Sbjct: 170 VVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILN---YKNGHIEDQ 226
Query: 260 VKEMTHGTGVDYGFECTGVASLISEALEATKLG 292
           V ++T+G GVD      G +  +S+A++  K G
Sbjct: 227 VMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG 259

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 29/175 (16%)
Query: 24  GEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPL---------FPRVLGHE 74
           G+P K+E+I +  PK ++V  K+  A +CH+DV   +G    L          P  LGHE
Sbjct: 10  GKPLKLEDIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHE 69
Query: 75  GVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLC-------LKY--PFTF 124
             G +E +GDEV    +GD+V +  + GE   C  C     +LC       + Y   +  
Sbjct: 70  IAGRIEEVGDEVVGYSKGDLVAVNPWEGEG-NCYYCRIGEEHLCDSPRWLGINYDGAYAE 128
Query: 125 HGLMPDGSSRMSIRGQKLYHI----FTCSTMTEYMVVDANYVVKVDPSIDLSLAG 175
           + L+P       +R  +L  +     TCS +T Y  V       +DPS  L + G
Sbjct: 129 YVLVPHYKYLYKLR--RLSAVEAAPLTCSGVTTYRAVRK---ASLDPSKTLVVIG 178

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 93/225 (41%), Gaps = 23/225 (10%)
Query: 70  VLGHEGVGMVESIGDEVKELKEGD-IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM 128
           +LGHE VG V  +G EVK+ K GD +V+P    + R  E          ++  +  H   
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSE----------VQRGYHQH--- 102
Query: 129 PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS-IDLSLAGFLSCGYSSGFGA 187
               S   + G K  ++        + V DA+  +   P  I L  A  +    ++GF  
Sbjct: 103 ----SGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHG 158
Query: 188 AWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
           A +   +E                 +  A+++GA +II +   P   D  + +G TD +N
Sbjct: 159 A-ELADIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVN 217
Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLG 292
             D P   I   +  +T G GVD      G A +++ A++  K G
Sbjct: 218 YKDGP---IESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPG 259

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 31  EIQVEPPKATEVRFKMLYASICHTDVLSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKEL 89
           E ++  P A EVR K+  A IC +D    +G  P   +PRV+GHE  G+++++G+ V+  
Sbjct: 36  EREIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVESA 95
Query: 90  KEGDIVIPTFIGECRECENCTSEMANLC 117
           + G+ V    +  C  C  C+    N+C
Sbjct: 96  RVGERVAVDPVVSCGHCYPCSIGKPNVC 123

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 117/273 (42%), Gaps = 32/273 (11%)
Query: 28  KVEEIQVEPPKAT--EVRFKMLYASICHTDVLSSKGFPLPLFPR---VLGHEGVGMVESI 82
           K+  I+ E P A   +   + L  S C +D+ +   F   L  R   +LGHE VG V  +
Sbjct: 11  KLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTV--FEGALGDRKNMILGHEAVGEVVEV 68
Query: 83  GDEVKELKEGD-IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQK 141
           G EVK+ K GD +++P    + R  E          ++  F  H       S   + G K
Sbjct: 69  GSEVKDFKPGDRVIVPCTTPDWRSLE----------VQAGFQQH-------SNGMLAGWK 111
Query: 142 LYHIFTCSTMTEYM-VVDANYVVKVDP-SIDLSLAGFLSCGYSSGFGAAWKEFKVEKXXX 199
             + F      EY  V DA+  + + P  + L  A  ++   ++GF  A +   ++    
Sbjct: 112 FSN-FKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSS 169
Query: 200 XXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISEL 259
                        +  A+++GA +IIG+   P   +  + +G TD +N     N  I + 
Sbjct: 170 VVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILN---YKNGHIVDQ 226
Query: 260 VKEMTHGTGVDYGFECTGVASLISEALEATKLG 292
           V ++T+G GVD      G +  +S+A+   K G
Sbjct: 227 VMKLTNGKGVDRVIMAGGGSETLSQAVSMVKPG 259

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 70  VLGHEGVGMVESIGDEVKELKEGD-IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM 128
           +LGHE VG V  +G EVK+ K GD +++P    + R  E        +   +P   +G++
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLE--------VQAGFPQHSNGML 107
Query: 129 PDGSSRMSIRGQKLYHIFTCSTMTEYM-VVDANYVVKVDP-SIDLSLAGFLSCGYSSGFG 186
                     G K  + F      EY  V DA+  + + P  + L  A  ++   ++GF 
Sbjct: 108 A---------GWKFSN-FKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFH 157
Query: 187 AAWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI 246
            A +   ++                 +  A+++GA +IIG+   P   +  + +G TD +
Sbjct: 158 GA-ELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDIL 216
Query: 247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLG 292
           N     N  I + V ++T+G GVD      G +  +S+A+   K G
Sbjct: 217 N---YKNGHIVDQVMKLTNGKGVDRVIMAGGGSETLSQAVSMVKPG 259

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 23/225 (10%)
Query: 70  VLGHEGVGMVESIGDEVKELKEGD-IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM 128
           +LGHE VG V  +G EVK+ K GD +V+P    + R  E          ++  +  H   
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSE----------VQRGYHQH--- 102
Query: 129 PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS-IDLSLAGFLSCGYSSGFGA 187
               S   + G K  ++        + V DA+  +   P  I L  A  +    ++GF  
Sbjct: 103 ----SGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHG 158
Query: 188 AWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
           A +   +E                 +  A+++GA +IIG+   P   +  + +G TD +N
Sbjct: 159 A-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILN 217
Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLG 292
                N  I + V ++T+G GVD      G +  +S+A++  K G
Sbjct: 218 ---YKNGHIVDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG 259

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 23/225 (10%)
Query: 70  VLGHEGVGMVESIGDEVKELKEGD-IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM 128
           +LGHE VG V  +G EVK+ K GD +V+P    + R  E          ++  +  H   
Sbjct: 56  ILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSE----------VQRGYHQH--- 102
Query: 129 PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS-IDLSLAGFLSCGYSSGFGA 187
               S   + G K  ++        + V DA+  +   P  I L  A  +    ++GF  
Sbjct: 103 ----SGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHG 158
Query: 188 AWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
           A +   ++                 +  A+++GA +IIG+   P   +  + +G TD +N
Sbjct: 159 A-ELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILN 217
Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLG 292
                N  I + V ++T+G GVD      G +  +S+A+   K G
Sbjct: 218 ---YKNGHIVDQVMKLTNGKGVDRVIMAGGGSETLSQAVSMVKPG 259

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 24  GEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPL---------FPRVLGHE 74
           G+P  ++EI V  PK  +V  K+  A +CH+DV   +G    L          P  LGHE
Sbjct: 10  GKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHE 69
Query: 75  GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC 117
             G +E +GDEV    +GD+V    +     C  C     +LC
Sbjct: 70  IAGKIEEVGDEVVGYSKGDLVAVNPLQGEGNCYYCRIGEEHLC 112

>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus Length = 347

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 24  GEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPL---------FPRVLGHE 74
           G+P  ++EI V  PK  +V  K+  A +CH+DV   +G    L          P  LGHE
Sbjct: 10  GKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHXRQGRFGNLRIVEDLGVKLPVTLGHE 69
Query: 75  GVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLC 117
             G +E +GDEV    +GD+V +  + GE   C  C     +LC
Sbjct: 70  IAGKIEEVGDEVVGYSKGDLVAVNPWQGEG-NCYYCRIGEEHLC 112

>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 24  GEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPL---------FPRVLGHE 74
           G+P  ++EI V  PK  +V  K+  A +CH+DV   +G    L          P  LGHE
Sbjct: 10  GKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHE 69
Query: 75  GVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLC 117
             G +E +GDEV    +GD+V +  + GE   C  C     +LC
Sbjct: 70  IAGKIEEVGDEVVGYSKGDLVAVNPWQGEG-NCYYCRIGEEHLC 112

>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 24  GEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPL---------FPRVLGHE 74
           G+P  ++EI V  PK  +V  K+  A +CH+DV   +G    L          P  LGHE
Sbjct: 10  GKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHE 69
Query: 75  GVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLC 117
             G +E +GDEV    +GD+V +  + GE   C  C     +LC
Sbjct: 70  IAGKIEEVGDEVVGYSKGDLVAVNPWQGEG-NCYYCRIGEEHLC 112

>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester Reductase (Cgi- 63) Length = 357

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 2   NCYFHISFLKIYYAAAVVCWGEGEPWKVEEI---QVEPPKATEVRFKMLYASICHTDVLS 58
           N YF     ++    A+V    G+P KV E+   ++   + ++VR KML A I  +D+  
Sbjct: 17  NLYFQSMPARVR---ALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINM 73
Query: 59  SKGF--PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIG 101
            +G    LP  P V G+EGV  V ++G  V  LK GD VIP   G
Sbjct: 74  IQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANAG 118

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 123/320 (38%), Gaps = 74/320 (23%)
Query: 31  EIQVEPPKATEVRFKMLYASICHTDV--------LSSKGFPLPLFPRVLGHEGVGMVESI 82
           E+ V  P   EV  K+L  SIC TD+          S+  P    P++ GHE  G V  I
Sbjct: 20  EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKP----PQIXGHEVAGEVVEI 75
Query: 83  GDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQK 141
           G  V+ ++ GD V + T I  C +C  C     ++C                    +  K
Sbjct: 76  GPGVEGIEVGDYVSVETHI-VCGKCYACRRGQYHVC--------------------QNTK 114
Query: 142 LYHIFTCSTMTEYMVVDANYVVKVDPSI---------------DLSLAGFLSCGYSSGFG 186
           ++ + T     EY VV A  + K   SI               D  LAG +S       G
Sbjct: 115 IFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGKSVLITG 174
Query: 187 AAWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI 246
           A                         +  A+  GA  +I  + +  R++  +  G    I
Sbjct: 175 AG------------------PLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVI 216
Query: 247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK 306
           NP +E    + + V ++T G GVD   E +G    + + L+A     G+V  +G     K
Sbjct: 217 NPFEE---DVVKEVXDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLG-LYPGK 271
Query: 307 VPLNFPAIALGRNLKGTIFG 326
           V ++F  + + + L  TI+G
Sbjct: 272 VTIDFNNLIIFKAL--TIYG 289

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 123/320 (38%), Gaps = 74/320 (23%)
Query: 31  EIQVEPPKATEVRFKMLYASICHTDV--------LSSKGFPLPLFPRVLGHEGVGMVESI 82
           E+ V  P   EV  K+L  SIC TD+          S+  P    P++ GHE  G V  I
Sbjct: 21  EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKP----PQIXGHEVAGEVVEI 76
Query: 83  GDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQK 141
           G  V+ ++ GD V + T I  C +C  C     ++C                    +  K
Sbjct: 77  GPGVEGIEVGDYVSVETHI-VCGKCYACRRGQYHVC--------------------QNTK 115
Query: 142 LYHIFTCSTMTEYMVVDANYVVKVDPSI---------------DLSLAGFLSCGYSSGFG 186
           ++ + T     EY VV A  + K   SI               D  LAG +S       G
Sbjct: 116 IFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGKSVLITG 175
Query: 187 AAWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI 246
           A                         +  A+  GA  +I  + +  R++  +  G    I
Sbjct: 176 AG------------------PLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVI 217
Query: 247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK 306
           NP +E    + + V ++T G GVD   E +G    + + L+A     G+V  +G     K
Sbjct: 218 NPFEE---DVVKEVXDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLG-LYPGK 272
Query: 307 VPLNFPAIALGRNLKGTIFG 326
           V ++F  + + + L  TI+G
Sbjct: 273 VTIDFNNLIIFKAL--TIYG 290

>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human Fas Ii Length = 344

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 17  AVVCWGEGEPWKVEEI---QVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVL 71
           A+V    G+P KV E+   ++   + ++VR KML A I  +D+   +G    LP  P V 
Sbjct: 16  ALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVG 75
Query: 72  GHEGVGMVESIGDEVKELKEGDIVIPTFIG 101
           G+EGV  V ++G  V  LK GD VIP   G
Sbjct: 76  GNEGVAQVVAVGSNVTGLKPGDWVIPANAG 105

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 25  EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL------SSKGFPLPLFPRVLGHEGVGM 78
           EP  +E++ +  P+  EV  ++  A +C TD+       + +GF LP+   +LGHE  G 
Sbjct: 14  EPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPI---ILGHENAGT 70
Query: 79  VESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC 117
           +  +G E+ ++K+GD V+         C  C     N+C
Sbjct: 71  IVEVG-ELAKVKKGDNVVVYATWGDLTCRYCREGKFNIC 108

>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From Thermotoga Maritima Length = 404

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 115/322 (35%), Gaps = 53/322 (16%)
Query: 19  VCWGEGEPWKVEEIQVEP------PKATEVRFKMLYASICHTDVLSSKG-------FP-L 64
           + W   + W+  E++VE        K TE+  K+    IC +DV  ++        +P L
Sbjct: 29  LTWLGSKVWRYPEVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHXAQTDEEGYILYPGL 88
Query: 65  PLFPRVLGHEGVGMVESIGDEV------KELKEGDIVIPTFIGECRECENCTSEMANLCL 118
             FP  LGHE  G+V   G E       K  + G+ V       C  C  C     N C 
Sbjct: 89  TGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEXLWCGHCRPCAEGFPNHCE 148
Query: 119 KYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVK------VDPSIDLS 172
                  G   DG+                    EY+ VDA Y         V     L 
Sbjct: 149 N--LNELGFNVDGA------------------FAEYVKVDAKYAWSLRELEGVYEGDRLF 188
Query: 173 LAGFLSCGYSSGFGAAW-KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNP 231
           LAG L    S  + A   +   +                  +   +  GA+K+I  + + 
Sbjct: 189 LAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSE 248
Query: 232 CRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEAT-- 289
            R++  +  G    I+P  E   +  E V + T+G G     E TGV  L+   +E    
Sbjct: 249 VRRNLAKELGADHVIDPTKE---NFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIW 305
Query: 290 -KLGKGKVMAIGAANEAKVPLN 310
              G    +AI A  +AK+PL 
Sbjct: 306 RARGINATVAIVARADAKIPLT 327

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 24 GEPWKVEEIQVEP----PKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMV 79
          G P  +E +  EP    P+A  VR K +  +   T    S  +P P  P  LG EG G+V
Sbjct: 11 GGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDT-YYRSGLYPAPFLPSGLGAEGAGVV 69
Query: 80 ESIGDEVKELKEGDIV 95
          E++GDEV   K GD V
Sbjct: 70 EAVGDEVTRFKVGDRV 85

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 116/306 (37%), Gaps = 52/306 (16%)
Query: 25  EPWKVEEIQVEPPKATEVRFKMLY----ASICHTDVLSSKG----FPLPLFPRVLGHEGV 76
           +P ++E+  V+ P+  E RF ++     A +CHTD+   +G       P  P  LGHE V
Sbjct: 26  KPLRIED--VDYPR-LEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENV 82
Query: 77  GMVESIGDEVKELKEGDIVI--PTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSS 133
           G +E + + V+ L++GD VI  P    G C  C     +M    L++P    GL  DG  
Sbjct: 83  GYIEEVAEGVEGLEKGDPVILHPAVTDGTCLAC-RAGEDMHCENLEFP----GLNIDGG- 136
Query: 134 RMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID----LSLAGFLSCGYSSGFGAAW 189
                              E+M      V+K+   I     + +A     G ++      
Sbjct: 137 -----------------FAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKK 179
Query: 190 KEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
               +                  +   ++   A +I +D    +    E  G    ++  
Sbjct: 180 AARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR 239
Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGK-GKVMAIGAANEAKVP 308
            +P K + EL    T G GV+   +  G  + +        LG+ G+++ +G   E    
Sbjct: 240 RDPVKQVMEL----TRGRGVNVAMDFVGSQATVDYT--PYLLGRMGRLIIVGYGGE---- 289
Query: 309 LNFPAI 314
           L FP I
Sbjct: 290 LRFPTI 295

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 117/300 (39%), Gaps = 33/300 (11%)
Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLF----PRVLG 72
           ++V  G G+  ++E   +  P   EV  KM    IC +DV   +   +  F    P VLG
Sbjct: 9   SLVVHGPGD-LRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLG 67
Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMP--D 130
           HE  G V  +G  V+ L+ GD V        +  E C     NL    P  F    P  D
Sbjct: 68  HEASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNLS---PTIFFCATPPDD 124
Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
           G+                  +  +   +AN+  K+  ++     G L    S G  A  +
Sbjct: 125 GN------------------LCRFYKHNANFCYKLPDNVTFE-EGALIEPLSVGIHAC-R 164
Query: 191 EFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
              V                  +  A+  GAA+++  D +  R  K +  G    +   +
Sbjct: 165 RAGVTLGNKVLVCGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILEISN 224
Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPL 309
           E  + I++ V+ +  G+  +   ECTGV + I   + AT  G G ++ +G  +E   VPL
Sbjct: 225 ESPEEIAKKVEGLL-GSKPEVTIECTGVETSIQAGIYATHSG-GTLVLVGLGSEMTSVPL 282

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 22 GEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVES 81
           +G  +K   + +  PK  E+  K+   S+   D    +   +   PRVLG + +G+VES
Sbjct: 15 SDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDT-KQRLMDVSKAPRVLGFDAIGVVES 73
Query: 82 IGDEVKELKEGDIV 95
          +G+EV    +GDIV
Sbjct: 74 VGNEVTMFNQGDIV 87

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 113/295 (38%), Gaps = 73/295 (24%)
Query: 31  EIQVEPPKATEVRFKMLYASICHTDV--------LSSKGFPLPLFPRVLGHEGVGMVESI 82
           E+ V  P   EV  K+L  SIC TD+          S+  P    P+++GHE  G V  +
Sbjct: 21  EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKP----PQIMGHEVAGEVVEV 76
Query: 83  GDEVKELKEGD-IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQK 141
           G  V++L+ GD I + T I  C +C  C     ++C                    +  K
Sbjct: 77  GPGVEDLQVGDYISVETHI-VCGKCYACKHNRYHVC--------------------QNTK 115
Query: 142 LYHIFTCSTMTEYMVVDAN------------YVVKVDP---SIDLSLAGFLSCGYSSGFG 186
           ++ +        Y +V A             Y    +P   ++D  LAG ++   +   G
Sbjct: 116 IFGVDMDGVFAHYAIVPAKNAWKNPKDMPPEYAALQEPLGNAVDTVLAGPIAGRSTLITG 175
Query: 187 AAWKEFKVEKXXXXXXXXXXXXXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI 246
           A                         +  A+  GA  +I  + +  R+   +  G    +
Sbjct: 176 AG------------------PLGLLGIAVAKASGAYPVIVSEPSEFRRKLAKKVGADYVV 217
Query: 247 NP-DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG 300
           NP +++P K     V ++T G GV+   E +G    + + L+A   G G+V  +G
Sbjct: 218 NPFEEDPVK----FVMDITDGAGVEVFLEFSGAPKALEQGLKAVTPG-GRVSLLG 267

>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase Length = 398

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 18  VVCWGEGEPWKVEEIQVEPPKATEVR---------FKMLYASICHTDVLSSKGFPLPLFP 68
           VV  G G   KVE  +++ PK  + R          K++  +IC +D    +G       
Sbjct: 6   VVYLGSG---KVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVG 62
Query: 69  RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCL 118
            VLGHE  G V   G +V+ L+ GD+V   F   C  C +C      +CL
Sbjct: 63  LVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCL 112

>pdb|2B5W|A Chain A, Crystal Structure Of D38c Glucose Dehydrogenase Mutant From Haloferax Mediterranei Length = 357

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 16 AAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTD--VLS--SKGFPLPLFPRVL 71
          A  V  GE  P  +E+ + EP ++ E   + L   +C TD  V++    GFP      VL
Sbjct: 3  AIAVKRGEDRPVVIEKPRPEP-ESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61
Query: 72 GHEGVGMVESIGDEVKELKEGDIVIPT 98
          GHE VG+V    D   EL+EGDIV+PT
Sbjct: 62 GHEAVGVVVDPND--TELEEGDIVVPT 86

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%)
Query: 30  EEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEVKEL 89
           E +  E     EVR K+  + +C +D+          +P  LGHE  G ++++G  V +L
Sbjct: 16  ESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHYYPITLGHEFSGYIDAVGSGVDDL 75
Query: 90  KEGDIVIPTFIGECRECENCTSEMANLCLKYPF 122
             GD V    +  C  C  C     + C KY F
Sbjct: 76  HPGDAVACVPLLPCFTCPECLKGFYSQCAKYDF 108

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 17 AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDV----LSSKGFPLPLFPRVLG 72
          ++V  G G+  ++E   +  P   EV  +M    IC +DV        G  +   P VLG
Sbjct: 10 SLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLG 68
Query: 73 HEGVGMVESIGDEVKELKEGDIV 95
          HE  G VE +G  VK LK GD V
Sbjct: 69 HEASGTVEKVGSSVKHLKPGDRV 91

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 103/273 (37%), Gaps = 36/273 (13%)
Query: 34  VEPPKATEVRFKMLYASICHTDV------LSSKGFPLPLFPRVLGHEGVGMVESIGDEVK 87
           V  P   E+  ++  ASIC TD+        ++G   P  P V GHE  G+VE++G  V+
Sbjct: 20  VPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRP--PLVTGHEFSGVVEAVGPGVR 77
Query: 88  ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFT 147
             + GD V       C  C  C +   ++CL       G+  DG                
Sbjct: 78  RPQVGDHVSLESHIVCHACPACRTGNYHVCLNT--QILGVDRDGG--------------- 120
Query: 148 CSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXX 207
                EY+VV A         +   +A  L   + +     +    V             
Sbjct: 121 ---FAEYVVVPAENAWVNPKDLPFEVAAILEP-FGNAVHTVYAGSGVSGKSVLITGAGPI 176
Query: 208 XXXXXMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGT 267
                M   R  GA  I+  D NP R      +     +NP +E    + E+V+ +T G+
Sbjct: 177 GLMAAM-VVRASGAGPILVSDPNPYRLAFARPYA-DRLVNPLEE---DLLEVVRRVT-GS 230
Query: 268 GVDYGFECTGVASLISEALEA-TKLGKGKVMAI 299
           GV+   E +G  + I + L A    G+ +++ I
Sbjct: 231 GVEVLLEFSGNEAAIHQGLMALIPGGEARILGI 263

>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form Length = 366

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 28/137 (20%)
Query: 41  EVRFKMLYASICHTDVLSSKG-FPLPLFPR-----VLGHEGVGMVESIGDEVKELKEGDI 94
           +++ + +Y  IC TD     G   L   P+     VLGHE +G+VE   +      +GD+
Sbjct: 28  KIKIRTIYNGICGTDREIVNGKLTLSTLPKGKDFLVLGHEAIGVVE---ESYHGFSQGDL 84
Query: 95  VIPTFIGECRECENCTSEMANLCLKYPFTFHGLMP-DGSSRMSIRGQKLYHIFTCSTMTE 153
           V+P     C  C NC     + C    F   G+   DG                   M E
Sbjct: 85  VMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGF------------------MRE 126
Query: 154 YMVVDANYVVKVDPSID 170
           +   D  Y+VK+  SI+
Sbjct: 127 WWYDDPKYLVKIPKSIE 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-143
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-142
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-141
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-140
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-139
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-119
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-98
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	2e-64
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	5e-58
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	2e-57
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	4e-57
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	2e-56
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	2e-55
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-52
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	3e-52
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	4e-52
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	4e-50
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	9e-50
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	8e-48
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-47
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	2e-47
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	6e-47
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	2e-45
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	5e-45
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-44
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	2e-34
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	3e-32
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	3e-30
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	2e-29
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	3e-29
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	8e-29
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	1e-28
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	2e-28
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	2e-28
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	7e-27
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	2e-25
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	3e-24
3gms_A	340	Putative NADPH:quinone reductase; structural genom	2e-20
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	1e-19
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	1e-16
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	8e-16
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	1e-15
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	8e-15
4eye_A	342	Probable oxidoreductase; structural genomics, niai	7e-13
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	2e-11
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	1e-10
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	1e-10
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	2e-10
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	2e-09
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	2e-09
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-07
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	3e-07
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	7e-07
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	2e-06
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	3e-06
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	5e-06
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	7e-06
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	3e-05
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	3e-05
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	1e-04

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  407 bits (1049), Expect = e-143
 Identities = 142/319 (44%), Positives = 191/319 (59%), Gaps = 5/319 (1%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEG 75
           A V W  G+P  +EEI+V PPKA EVR K++  ++CHTD  +  G  P   FP +LGH G
Sbjct: 9   AAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLG 68

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSR 134
            G+VES+G+ V +LK GD VIP +I +C EC+ C +   NLC K   T   GLMPDG+SR
Sbjct: 69  AGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSR 128

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
            + +G+ + H    ST +EY VV    V K+DP   L     L CG S+G+GAA    K+
Sbjct: 129 FTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKL 188

Query: 195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
           E GS  AVFGLG VGL V+   ++ GA++IIG+D N  +  + + FG T+ INP D  +K
Sbjct: 189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDF-SK 247

Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEAKVPLNFPA 313
            I E++ EMT G GVDY FEC G   ++  ALEA   G G  + +G AA+  ++      
Sbjct: 248 PIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQ 306

Query: 314 IALGRNLKGTIFGGIKTKS 332
           +  GR  KGT FGG K+  
Sbjct: 307 LVTGRTWKGTAFGGWKSVE 325

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  405 bits (1042), Expect = e-142
 Identities = 126/321 (39%), Positives = 183/321 (57%), Gaps = 8/321 (2%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A + W  G P  +EEI+V PPKA EVR +++   +C TD+ ++      LFP VLGHE  
Sbjct: 11  AAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLGHECA 70

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-----PFTFHGLMPDG 131
           G+VES+G  V   K GD VIP F  +C+ C+ C S + NLC K      P     LM D 
Sbjct: 71  GIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDR 130

Query: 132 SSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKE 191
           +SR + +G+ +YH    S+ ++Y VV    + +VD   +L     + CG+SSG+GAA   
Sbjct: 131 TSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINT 190

Query: 192 FKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE 251
            KV  GS+ AVFGLG VGL  +   +I GA++II ID N  +  K +A G TD +NP + 
Sbjct: 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPREL 250

Query: 252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNF 311
            +K + +++ E+T G GVDY  +C G A  +  A++ T LG G    +GA    ++ +  
Sbjct: 251 -DKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV-DEMTIPT 307

Query: 312 PAIALGRNLKGTIFGGIKTKS 332
             + LGR++ GT FGG K+  
Sbjct: 308 VDVILGRSINGTFFGGWKSVD 328

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  404 bits (1040), Expect = e-141
 Identities = 129/318 (40%), Positives = 182/318 (57%), Gaps = 4/318 (1%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLS-SKGFPLPLFPRVLGHEG 75
           A V W   +P  +EEI+V+ P A E+R K++   +CHTD+    +G     FP VLGHEG
Sbjct: 11  AAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEG 70

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSR 134
            G+VES+G  V E + G+ VIP FI +C EC  C S   N C+K        +M    +R
Sbjct: 71  AGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETR 130

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
            + +G+K+      ST ++Y VV+   V K+DPS  L     L CG S+GFGAA    KV
Sbjct: 131 FTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKV 190

Query: 195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK 254
           E GS+ AVFGLGAVGL  +      GA +II +D NP + +K + FG TDF+NP+D  ++
Sbjct: 191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDH-SE 249

Query: 255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI 314
            IS+++ +MT+G GVD+  EC G   ++  ALE+   G G  + +G  +   V      +
Sbjct: 250 PISQVLSKMTNG-GVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQL 308

Query: 315 ALGRNLKGTIFGGIKTKS 332
             GR  KG++FGG K K 
Sbjct: 309 IAGRTWKGSMFGGFKGKD 326

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  400 bits (1029), Expect = e-140
 Identities = 126/318 (39%), Positives = 180/318 (56%), Gaps = 4/318 (1%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A V W E +P+ +EE++V PPKA EVR KM+   IC +D     G  +   P + GHE  
Sbjct: 11  AAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAA 70

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRM 135
           G+VESIG+ V  ++ GD VIP F  +C +C  C     N CLK   +   G M DG+SR 
Sbjct: 71  GIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRF 130

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
           + RG+ ++H    ST ++Y VVD   V K+D +  L     + CG+S+G+G+A K  KV 
Sbjct: 131 TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVT 190

Query: 196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS 255
           +GS+ AVFGLG VGL V+   +  GAA+IIG+D N  +  K +  G T+ +NP D   K 
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDY-KKP 249

Query: 256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEAKVPLNFPAI 314
           I E++ EM++G GVD+ FE  G    +  AL   +   G  + +G   +   + +N   +
Sbjct: 250 IQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLL 308

Query: 315 ALGRNLKGTIFGGIKTKS 332
             GR  KG IFGG K+K 
Sbjct: 309 LSGRTWKGAIFGGFKSKD 326

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  398 bits (1026), Expect = e-139
 Identities = 129/317 (40%), Positives = 181/317 (57%), Gaps = 5/317 (1%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A V W   +P  +E I V PPKA EVR K+L + IC +D    K      FP +LGHE V
Sbjct: 12  AAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFPVILGHEAV 71

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRM 135
           G+VESIG  V  +K GD VIP F+ +C  C  C S  +N C K       GLM D +SR 
Sbjct: 72  GVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRF 131

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
           + RG+ +Y++   ST TEY VV    V K+DP   L  +  + CG+++G+GAA    KV 
Sbjct: 132 TCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVT 190

Query: 196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS 255
            GS+ AVFGLG VG   +   +  GA++IIG+  +  +  K    G T+ +NP D  +K 
Sbjct: 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDY-DKP 249

Query: 256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEAKVPLNFPAI 314
           I E++ E T+G GVDY  EC G    +  AL++T  G G  + +G A+   ++PL+   +
Sbjct: 250 IYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLL 308

Query: 315 ALGRNLKGTIFGGIKTK 331
             GR+LKG++FGG K +
Sbjct: 309 LTGRSLKGSVFGGFKGE 325

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  347 bits (893), Expect = e-119
 Identities = 96/323 (29%), Positives = 156/323 (48%), Gaps = 15/323 (4%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEG 75
           A V   +G  ++++ +++  P+  EV  K++   +CHTD++     +P+P  P VLGHEG
Sbjct: 9   AAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP-LPAVLGHEG 67

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-PFTFHGLMPDGSSR 134
            G++E+IG  V EL+ GD V+ ++ G C +C  C +     C ++    F G   +G+  
Sbjct: 68  SGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHA 126

Query: 135 MSIRGQKLY--HIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
           +    Q +   H F  S+   Y +   N  VKV   + + L G L CG  +G GA     
Sbjct: 127 LCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINAL 186

Query: 193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP 252
           KV   SS   +G GAVGL  +  A++ GA+ II +D    R +  +  G T  IN   + 
Sbjct: 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQD 246

Query: 253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP 312
                  +KE+T G GV++  E TG   ++ + ++A  +  GK+  +GA         F 
Sbjct: 247 ---PVAAIKEITDG-GVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTT-AQFD 300

Query: 313 AIAL---GRNLKGTIFGGIKTKS 332
              L   G+ + G + G    K 
Sbjct: 301 VNDLLLGGKTILGVVEGSGSPKK 323

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  294 bits (756), Expect = 1e-98
 Identities = 82/325 (25%), Positives = 131/325 (40%), Gaps = 25/325 (7%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEG 75
           A+V     +P   +E ++       +  ++L A +C +DV   +G  P    P +LGHEG
Sbjct: 20  AMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEG 79

Query: 76  VGMVESIGDEVK-----ELKEGDIVIPTFIGECRECENC-TSEMANLCLKYPFTFHGLMP 129
            G V  +  E +      LK GD+++      C EC  C  S+   LC           P
Sbjct: 80  AGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLC-----------P 128

Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVD-ANYVVKVDPSIDLSLAGFLSCGYSSGFGAA 188
           +       RG   Y        + ++V+D    V+KV    DL +     C  ++ + A 
Sbjct: 129 NRKVYGINRGCSEYPHLR-GCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAF 187

Query: 189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP 248
            +  +   G +V + G G +GL  +  AR  GA  +I I  +P R    E  G    +N 
Sbjct: 188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNR 247

Query: 249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEAKV 307
            +   +   + + ++THG G D+  E TG +  + E  E  + G G     G A  +  V
Sbjct: 248 RETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPV 306

Query: 308 PLNFPAIALGRNLKGTIFGGIKTKS 332
           P     +     LK   F GI    
Sbjct: 307 PFK---VYEWLVLKNATFKGIWVSD 328

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  206 bits (526), Expect = 2e-64
 Identities = 75/318 (23%), Positives = 119/318 (37%), Gaps = 32/318 (10%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDV----LSSKGFPLPLFPRVLG 72
           AV     G    V +I    P   E+  K+  A +CH+D+    + +  +   L P  LG
Sbjct: 3   AVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGL-PLTLG 61

Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLK---YPFTFHGLMP 129
           HEGVG V  +G+ V     GD V       C  C  C     N C +      T  GL  
Sbjct: 62  HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGS 121

Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSC-GYSSGFGAA 188
            G                  +M EYM+VD+   +     +D   A  L+  G +     +
Sbjct: 122 PG------------------SMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAIS 163

Query: 189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP 248
                +  GS+  V G+G +G   +   R   AA++I +D +  R       G    +  
Sbjct: 164 RVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKS 223

Query: 249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVP 308
                   ++ ++E+T G G    F+  G  S I  A +   +  G +  +G    A   
Sbjct: 224 GAGA----ADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAGAHAK 278

Query: 309 LNFPAIALGRNLKGTIFG 326
           + F  I  G ++    +G
Sbjct: 279 VGFFMIPFGASVVTPYWG 296

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  190 bits (484), Expect = 5e-58
 Identities = 68/319 (21%), Positives = 122/319 (38%), Gaps = 35/319 (10%)

Query: 17  AVVCWGEGEPWKVEEIQV-EPPKATEVRFKMLYASICHTDVLSSKGF----PLPLFPRVL 71
           A       +P ++E++         +V  ++  A +CHTD+   +G       P  P  L
Sbjct: 18  AARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTL 77

Query: 72  GHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDG 131
           GHE VG +E + + V+ L++GD VI         C  C +     C      F GL  DG
Sbjct: 78  GHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCEN--LEFPGLNIDG 135

Query: 132 SSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID---LSLAGFLSCGYSSGFGAA 188
                                E+M      V+K+   I    L     L+    + + A 
Sbjct: 136 ------------------GFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAV 177

Query: 189 WK-EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
            K    +  G+ VA+ G+G +G   +   ++   A +I +D    +    E  G    ++
Sbjct: 178 KKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVD 237

Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKV 307
              +P     + V E+T G GV+   +  G  + +           G+++ +G   E + 
Sbjct: 238 ARRDP----VKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYGGELRF 292

Query: 308 PLNFPAIALGRNLKGTIFG 326
           P     I+   + +G++ G
Sbjct: 293 PT-IRVISSEVSFEGSLVG 310

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  188 bits (481), Expect = 2e-57
 Identities = 73/317 (23%), Positives = 114/317 (35%), Gaps = 41/317 (12%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           AV     G    V  + +  P   ++  K+    IC TD     G      P  LGHE  
Sbjct: 26  AVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPSTPPVTLGHEFC 84

Query: 77  GMVESIGDEVKELKEGD--IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSR 134
           G+V   G  V+++  G      P     C  C  C +   NLC        G+  DG   
Sbjct: 85  GIVVEAGSAVRDIAPGARITGDPNIS--CGRCPQCQAGRVNLCRNL--RAIGIHRDGG-- 138

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---LSCGYSSGFGAAWKE 191
                             EY++V      ++  ++D     F   L+C            
Sbjct: 139 ----------------FAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL-----HGVDL 177

Query: 192 FKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE 251
             ++ GS+VA+ G G +GL  +  AR+ GA  +I   +   ++   E  G T  ++P   
Sbjct: 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAG 237

Query: 252 PNKSISELVKEMT--HGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEAKVP 308
               + E +         GVD   EC GVA  + ++    K G G V+ +G      KV 
Sbjct: 238 ---DVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVE 293

Query: 309 LNFPAIAL-GRNLKGTI 324
           +    I      + G+ 
Sbjct: 294 IEPFDILFRELRVLGSF 310

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  187 bits (477), Expect = 4e-57
 Identities = 63/293 (21%), Positives = 107/293 (36%), Gaps = 44/293 (15%)

Query: 17  AVVCWGEGEPWKVEEIQV-EPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEG 75
           +VV   +G   +V E  + E     EVR K+  + +C +D+          +P  LGHE 
Sbjct: 3   SVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHYYPITLGHEF 61

Query: 76  VGMVESIGDEVKELKEGDIV-----IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
            G ++++G  V +L  GD V     +P     C  C  C     + C KY   F G   D
Sbjct: 62  SGYIDAVGSGVDDLHPGDAVACVPLLP-----CFTCPECLKGFYSQCAKY--DFIGSRRD 114

Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---LSCGYSSGFGA 187
           G                     EY+VV    V  +   + +    F   ++ G       
Sbjct: 115 G------------------GFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL-----H 151

Query: 188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
           A+   +  +  +V + G G +GL  +  A   GA  +  ID +  +    ++FG     N
Sbjct: 152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFN 211

Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG 300
             +    S  ++   +          E  GV   +  A+E       ++  +G
Sbjct: 212 SSEM---SAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVG 260

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  185 bits (473), Expect = 2e-56
 Identities = 76/317 (23%), Positives = 121/317 (38%), Gaps = 42/317 (13%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLF----PRVLG 72
           A++    G   ++ E+ V  P   EV  K+L  SIC TD+   +           P+++G
Sbjct: 7   AIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMG 66

Query: 73  HEGVGMVESIGDEVKELKEGDIVI--PTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
           HE  G V  IG  V+ ++ GD V      +  C +C  C     ++C        G+  D
Sbjct: 67  HEVAGEVVEIGPGVEGIEVGDYVSVETHIV--CGKCYACRRGQYHVCQNT--KIFGVDTD 122

Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---LSCGYSSGFGA 187
           G                     EY VV A  + K   SI    A     L          
Sbjct: 123 G------------------VFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAV-----D 159

Query: 188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
                 +  G SV + G G +GL  +  A+  GA  +I  + +  R++  +  G    IN
Sbjct: 160 TVLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVIN 218

Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEAK 306
           P +E    + + V ++T G GVD   E +G    + + L+A     G+V  +G    +  
Sbjct: 219 PFEE---DVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPGKVT 274

Query: 307 VPLNFPAIALGRNLKGT 323
           +  N   I     + G 
Sbjct: 275 IDFNNLIIFKALTIYGI 291

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  183 bits (466), Expect = 2e-55
 Identities = 74/318 (23%), Positives = 115/318 (36%), Gaps = 43/318 (13%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLF----PRVLG 72
           A+      E   + +  V  P   E+  ++  ASIC TD+   K           P V G
Sbjct: 3   ALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTG 62

Query: 73  HEGVGMVESIGDEVKELKEGDIVI--PTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
           HE  G+VE++G  V+  + GD V      +  C  C  C +   ++CL       G+  D
Sbjct: 63  HEFSGVVEAVGPGVRRPQVGDHVSLESHIV--CHACPACRTGNYHVCLNT--QILGVDRD 118

Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---LSCGYSSGFGA 187
           G                     EY+VV A         +   +A                
Sbjct: 119 G------------------GFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAV-----H 155

Query: 188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
                    G SV + G G +GL      R  GA  I+  D NP R      +     +N
Sbjct: 156 TVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYA-DRLVN 214

Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEAK 306
           P +E    + E+V+ +T G+GV+   E +G  + I + L A   G G+   +G  ++  +
Sbjct: 215 PLEE---DLLEVVRRVT-GSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPSDPIR 269

Query: 307 VPLNFPAIALGRNLKGTI 324
             L    +  G    G  
Sbjct: 270 FDLAGELVMRGITAFGIA 287

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  176 bits (449), Expect = 2e-52
 Identities = 78/337 (23%), Positives = 116/337 (34%), Gaps = 56/337 (16%)

Query: 17  AVVCWGEGEPWKVEEIQV-EPPKATEVRFKMLYASICHTDV-------LSSKGFPLPL-F 67
               W   E   VEE+      K TE+  K+    IC +DV            +P    F
Sbjct: 33  GSKVWRYPEVR-VEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGF 91

Query: 68  PRVLGHEGVGMVESIGDEV------KELKEGDIVIPTFIGECRECENCTSEMANLCLKYP 121
           P  LGHE  G+V   G E       K  + G+ V    +  C  C  C     N C    
Sbjct: 92  PVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENL- 150

Query: 122 FTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF----- 176
               G   DG                     EY+ VDA Y   +     +          
Sbjct: 151 -NELGFNVDG------------------AFAEYVKVDAKYAWSLRELEGVYEGDRLFLAG 191

Query: 177 -----LSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP 231
                 S  Y        +   +  G +V + G G +GL  +   +  GA+K+I  + + 
Sbjct: 192 SLVEPTSVAY---NAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSE 248

Query: 232 CRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEAT-- 289
            R++  +  G    I+P  E   +  E V + T+G G     E TGV  L+   +E    
Sbjct: 249 VRRNLAKELGADHVIDPTKE---NFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIW 305

Query: 290 -KLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTI 324
              G    +AI A  +AK+PL      +    + G+ 
Sbjct: 306 RARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQ 342

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  174 bits (444), Expect = 3e-52
 Identities = 74/322 (22%), Positives = 124/322 (38%), Gaps = 39/322 (12%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--------PLPL-F 67
           AV     G+P  ++EI V  PK  +V  K+  A +CH+DV   +G          L +  
Sbjct: 3   AVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKL 62

Query: 68  PRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGL 127
           P  LGHE  G +E +GDEV    +GD+V          C  C     +LC    +   G+
Sbjct: 63  PVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL--GI 120

Query: 128 MPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGA 187
             DG+                    EY++V     +     ++   A  L+C   + + A
Sbjct: 121 NFDGA------------------YAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRA 162

Query: 188 AWKEFKVEKGSSVAVFG-LGAVG-LGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF 245
             ++  ++   ++ V G  G +G + V   A+    A IIG+D      +  +  G    
Sbjct: 163 V-RKASLDPTKTLLVVGAGGGLGTMAVQ-IAKAVSGATIIGVDVREEAVEAAKRAGADYV 220

Query: 246 INPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEA 305
           IN   +        ++ +T   GVD   +       +S   +A     GK + +G     
Sbjct: 221 INASMQ---DPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGA- 275

Query: 306 KVPLNFPAIAL-GRNLKGTIFG 326
            +  + P I L      G++ G
Sbjct: 276 DLHYHAPLITLSEIQFVGSLVG 297

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  174 bits (443), Expect = 4e-52
 Identities = 62/318 (19%), Positives = 111/318 (34%), Gaps = 36/318 (11%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPL---FPRVLGH 73
           A +     EP  +E++ +  P+  EV  ++  A +C TD+   KG         P +LGH
Sbjct: 6   AALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGH 65

Query: 74  EGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSS 133
           E  G +  +G E+ ++K+GD V+         C  C     N+C        G   +G  
Sbjct: 66  ENAGTIVEVG-ELAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIP--GQTTNGG- 121

Query: 134 RMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGA---AWK 190
                             +EYM+V ++  +    S+    A  L+   ++  GA   A  
Sbjct: 122 -----------------FSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALP 164

Query: 191 EFKVEKGSSVAVFGLGAVG-LGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
                    V V G+G +    +     +     I+GI ++   +D     G        
Sbjct: 165 FISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMK 224

Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEAKVP 308
           D        L+ ++T G G     +  G         +      G ++ +G       + 
Sbjct: 225 D-----AESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGMEGKRVSLE 278

Query: 309 LNFPAIALGRNLKGTIFG 326
             F      + L G+ +G
Sbjct: 279 A-FDTAVWNKKLLGSNYG 295

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  169 bits (430), Expect = 4e-50
 Identities = 78/325 (24%), Positives = 125/325 (38%), Gaps = 45/325 (13%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPL-FPRVLGHE 74
            V+ +      + ++I V  PKA E+   + Y+ +CHTD+ +  G +PLP+  P V GHE
Sbjct: 8   GVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHE 67

Query: 75  GVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSS 133
           G G+V  +G+ VK  K GD   I    G C  CE C     + C        G   DG  
Sbjct: 68  GAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHA--DLSGYTHDG-- 123

Query: 134 RMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCG----YSSGFGAAW 189
                           +  +Y   DA     +    DL+    + C     Y      A 
Sbjct: 124 ----------------SFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYK-----AL 162

Query: 190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA----AKIIGIDKNPCRKDKGEAFGMTDF 245
           K   +  G  VA+ G    GLG +    +Q A     +++GID    +++   + G   F
Sbjct: 163 KSANLMAGHWVAISGAAG-GLGSLA---VQYAKAMGYRVLGIDGGEGKEELFRSIGGEVF 218

Query: 246 INPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEA 305
           I+   E +  I   V + T G G       +   + I  +    +   G  + +G    A
Sbjct: 219 IDFTKEKD--IVGAVLKATDG-GAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPAGA 274

Query: 306 KVPLN-FPAIALGRNLKGTIFGGIK 329
           K   + F  +    ++ G+  G   
Sbjct: 275 KCCSDVFNQVVKSISIVGSYVGNRA 299

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  168 bits (427), Expect = 9e-50
 Identities = 77/323 (23%), Positives = 123/323 (38%), Gaps = 45/323 (13%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPL-PLFPRVLGHE 74
           A V    G P  ++E+ V  P   +V+ K+  + +CHTD+ ++ G +P+ P  P + GHE
Sbjct: 5   AAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHE 64

Query: 75  GVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSS 133
           GVG V ++G  V  +KEGD V +P     C  CE+C      LC K   T  G   +G  
Sbjct: 65  GVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNT--GYSVNG-- 120

Query: 134 RMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSC----GYSSGFGAAW 189
                              EY+V D NYV  +   +       + C     Y        
Sbjct: 121 ----------------GYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYK-----GL 159

Query: 190 KEFKVEKGSSVAVFGLGAVGLGVM--DRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN 247
           K      G  V + G+G  GLG +    AR  G  ++  +D +  + +     G    +N
Sbjct: 160 KVTDTRPGQWVVISGIG--GLGHVAVQYARAMG-LRVAAVDIDDAKLNLARRLGAEVAVN 216

Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKV 307
             D      +  +++     G              S+A+   + G G +   G       
Sbjct: 217 ARDTD---PAAWLQKEIG--GAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPPGD-F 269

Query: 308 PLN-FPAIALGRNLKGTIFGGIK 329
               F  +  G  ++G+I G   
Sbjct: 270 GTPIFDVVLKGITIRGSIVGTRS 292

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  163 bits (415), Expect = 8e-48
 Identities = 80/324 (24%), Positives = 122/324 (37%), Gaps = 52/324 (16%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLF----PRVLG 72
           ++V  G G+   +E   +  P   EV  +M    IC +DV   +   +  F    P VLG
Sbjct: 10  SLVVHGPGDLR-LENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLG 68

Query: 73  HEGVGMVESIGDEVKELKEGDIV-----IPTFIGECRECENCTSEMANLCLKYPFTFHGL 127
           HE  G VE +G  VK LK GD V      P         E C     NL       F   
Sbjct: 69  HEASGTVEKVGSSVKHLKPGDRVAIEPGAP-----RENDEFCKMGRYNLSPSI--FFCAT 121

Query: 128 MP-DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---LSCGYSS 183
            P DG                   +  +   +A +  K+  ++          LS G   
Sbjct: 122 PPDDG------------------NLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGI-- 161

Query: 184 GFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT 243
               A +   V  G  V V G G +G+  +  A+  GAA+++  D +  R  K +  G  
Sbjct: 162 ---HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD 218

Query: 244 DFINPDDEPNKSISELVKEMT--HGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG- 300
             +    E   S  E+ +++    G   +   ECTG  + I   + AT+ G G ++ +G 
Sbjct: 219 LVLQISKE---SPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGL 274

Query: 301 AANEAKVPLNFPAIALGRNLKGTI 324
            +    VPL   A     ++KG  
Sbjct: 275 GSEMTTVPLL-HAAIREVDIKGVF 297

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  163 bits (414), Expect = 1e-47
 Identities = 75/328 (22%), Positives = 114/328 (34%), Gaps = 48/328 (14%)

Query: 12  IYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDV---LSSKGFPLPL-F 67
                  +   E  P      + E  K  EV   +    IC +DV         P+ +  
Sbjct: 13  FTNPQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVEC 72

Query: 68  PRVLGHEGVGMVESIGDEVKELKEGDIV-----IPTFIGECRECENCTSEMANLCLKYPF 122
             VLGHE  G V ++   VK +K GD V     +      C  CE C +   N C +   
Sbjct: 73  DHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVI-----CNACEPCLTGRYNGCERV-- 125

Query: 123 TFHGLMP-DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---LS 178
            F    P  G                   +  Y+   A +  K+  ++          LS
Sbjct: 126 DFLSTPPVPG------------------LLRRYVNHPAVWCHKI-GNMSYENGAMLEPLS 166

Query: 179 CGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE 238
                   A  +   V  G  V + G G +GL  M  A+  GA  ++  D +  R    +
Sbjct: 167 VAL-----AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAK 221

Query: 239 AFGMTDFINPDDEPN-KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVM 297
                   +  +  + +  ++ + E   G       ECTGV S I+ A+ A K G GKV 
Sbjct: 222 EICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVF 280

Query: 298 AIG-AANEAKVPLNFPAIALGRNLKGTI 324
            IG   NE ++P    A     +L+   
Sbjct: 281 VIGVGKNEIQIPFM-RASVREVDLQFQY 307

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  162 bits (412), Expect = 2e-47
 Identities = 86/326 (26%), Positives = 133/326 (40%), Gaps = 51/326 (15%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPL-PLFPRVLGHE 74
           A V     EP K++E++       EV  ++    +CHTD+ ++ G +P+ P  P + GHE
Sbjct: 3   AAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHE 62

Query: 75  GVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSS 133
           GVG+VE +G  V  LK GD V IP     C  C+ C S    LC        G   DG  
Sbjct: 63  GVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNA--GYSVDG-- 118

Query: 134 RMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCG----YSSGFGAAW 189
                              EY    A+YVVK+  ++    A  + C     Y      A 
Sbjct: 119 ----------------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYK-----AL 157

Query: 190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA----AKIIGIDKNPCRKDKGEAFGMTDF 245
           K    + G  VA++G+G  GLG +    +Q A      ++ +D    + +  +  G    
Sbjct: 158 KVTGAKPGEWVAIYGIG--GLGHVA---VQYAKAMGLNVVAVDIGDEKLELAKELGADLV 212

Query: 246 INPDDEPNKSISELVKEMTHGTGVDYGFECTGVASL-ISEALEATKLGKGKVMAIGAANE 304
           +NP  E      +  K M    G  +    T V+      A  + + G G  + +G   E
Sbjct: 213 VNPLKE------DAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPE 265

Query: 305 AKVPLN-FPAIALGRNLKGTIFGGIK 329
            ++P+  F  +  G  + G+I G  K
Sbjct: 266 -EMPIPIFDTVLNGIKIIGSIVGTRK 290

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  161 bits (410), Expect = 6e-47
 Identities = 57/318 (17%), Positives = 102/318 (32%), Gaps = 48/318 (15%)

Query: 17  AVVCWGEGEPWKVEEIQV-EPPKATEVRFKMLYASICHTDV------LSSKGFPLPLFPR 69
           A++        +V+++   +     +++ + +Y  IC  D       L+    P      
Sbjct: 3   AIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFL 62

Query: 70  VLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMP 129
           VLGHE +G+VE   +      +GD+V+P     C  C NC     + C    F   G+  
Sbjct: 63  VLGHEAIGVVE---ESYHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHK 119

Query: 130 -DGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID--LSLAGFLSCGY----- 181
            DG                   M E+   D  Y+VK+  SI+    LA  L+        
Sbjct: 120 MDG------------------FMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEE 161

Query: 182 ----SSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG 237
                        +        V V G G +G+      R  G    +   + P   ++ 
Sbjct: 162 ILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQT 221

Query: 238 EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGV-ASLISEALEATKLGKGKV 296
                             + + V         D   + TG   +++   +       G +
Sbjct: 222 VIEETKTNYYNSSNGYDKLKDSVG------KFDVIIDATGADVNILGNVIPLLGRN-GVL 274

Query: 297 MAIGAANEAKVPLNFPAI 314
              G +    VPL++  +
Sbjct: 275 GLFGFSTSGSVPLDYKTL 292

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  156 bits (398), Expect = 2e-45
 Identities = 72/311 (23%), Positives = 113/311 (36%), Gaps = 31/311 (9%)

Query: 25  EPWKVEEIQVEPPK--ATEVRFKMLYASICHTDV-LSSKGFPLPLFPRVLGHEGVGMVES 81
              KV  I+ E P     +   + L  + C +D+    +G        +LGHE VG V  
Sbjct: 8   SIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVE 67

Query: 82  IGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMP-DGSSRMSIRGQ 140
           +G EVK+ K GD V+   I                       +      DG         
Sbjct: 68  VGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDG-------VF 120

Query: 141 KLYHIFTCSTMTEYMVV-DANY-VVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGS 198
                       E+  V DA+  +  +   I L  A  +    ++GF  A +   ++ G 
Sbjct: 121 -----------GEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELANIKLGD 168

Query: 199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISE 258
           +V V G+G VGL  +  A   GA +I  +       D    +G TD IN  +     I E
Sbjct: 169 TVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNG---DIVE 225

Query: 259 LVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGR 318
            + + T G GVD      G     ++A++  K G   +  +    E    ++ P    G 
Sbjct: 226 QILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEG-DNIDIPRSEWGV 283

Query: 319 NLKG-TIFGGI 328
            +    I GG+
Sbjct: 284 GMGHKHIHGGL 294

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  156 bits (396), Expect = 5e-45
 Identities = 65/327 (19%), Positives = 112/327 (34%), Gaps = 45/327 (13%)

Query: 16  AAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDV----LSSKGFPLPLFPRVL 71
           A  V  GE  P  V E     P++ E   + L   +C TD         GFP      VL
Sbjct: 3   AIAVKRGEDRPV-VIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61

Query: 72  GHEGVGMVESIGDEVKELKEGDIV--IPTFIGECRECENCTSEMANLCLKYPFTFHGL-M 128
           GHE VG+V        EL+EGDIV             E    +  ++     +   G+  
Sbjct: 62  GHEAVGVVV--DPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVG 119

Query: 129 PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID--LSLAGFLSCGY-SSGF 185
             G                   M+E+      Y+V++  S      L   +S    +   
Sbjct: 120 AHG------------------YMSEFFTSPEKYLVRIPRSQAELGFLIEPISITEKALEH 161

Query: 186 GAAWKEFKVEKGSSVAVFGLGAVGLGVMD--RARIQGAAKIIGI---DKNPCRKDKGEAF 240
             A +       SS  V G G++GL  +   +   +G   +  +   D+     D  E  
Sbjct: 162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL 221

Query: 241 GMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG 300
             T +++    P + + ++         +D+ +E TG      ++++A     G    +G
Sbjct: 222 DAT-YVDSRQTPVEDVPDV------YEQMDFIYEATGFPKHAIQSVQALAPN-GVGALLG 273

Query: 301 AANEAKVPLNFPAIALGRNLKG-TIFG 326
             ++    ++  A      L    + G
Sbjct: 274 VPSDWAFEVDAGAFHREMVLHNKALVG 300

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  155 bits (393), Expect = 1e-44
 Identities = 80/310 (25%), Positives = 128/310 (41%), Gaps = 44/310 (14%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLF----PRVLGHEGVGMVESIG 83
           ++E+  +  PK  EV  +M Y  IC +DV   +   +  F    P V+GHE  G V  +G
Sbjct: 17  RLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVG 76

Query: 84  DEVKELKEGDIVI--PTFIGECRECENCTSEMANLCLKYPFTFHGLMP-DGSSRMSIRGQ 140
             VK LK+GD V   P     CR C+ C     NLC     TF    P DG         
Sbjct: 77  KNVKHLKKGDRVAVEPGVP--CRRCQFCKEGKYNLCPDL--TFCATPPDDG--------- 123

Query: 141 KLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF---LSCGYSSGFGAAWKEFKVEKG 197
                     +  Y V  A++  K+  ++ L        LS G       A +   V+ G
Sbjct: 124 ---------NLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV-----HACRRAGVQLG 169

Query: 198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSIS 257
           ++V V G G +GL  +  A+  G A ++   ++P R +  +  G    +  D    +  S
Sbjct: 170 TTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGADVTLVVDP-AKEEES 227

Query: 258 ELVKEMTH--GTGVDYGFECTGVASLISEALEATKLGKGKVMAIG-AANEAKVPLNFPAI 314
            +++ +    G   +   +C+G    I+  +  T+ G G +M +G  +    VPL   A 
Sbjct: 228 SIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQMVTVPLV-NAC 285

Query: 315 ALGRNLKGTI 324
           A   ++K   
Sbjct: 286 AREIDIKSVF 295

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  129 bits (326), Expect = 2e-34
 Identities = 62/244 (25%), Positives = 86/244 (35%), Gaps = 24/244 (9%)

Query: 68  PRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGL 127
             VLGHE  G V   G +V+ L+ GD+V   F   C  C +C      +CL       G 
Sbjct: 62  GLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGG 121

Query: 128 MPDGSSRM-SIRGQKLYHIFTCSTMTEYMVV---DANYVV---KVDPSIDLSLAGFLSCG 180
              G   M    G             EY++V   D N +    +      +     LS  
Sbjct: 122 A-YGYVDMGDWTG----------GQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDI 170

Query: 181 YSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF 240
             +G+  A     V  GS+V V G G VGL     AR+ GAA +I  D NP R    +A 
Sbjct: 171 LPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ 229

Query: 241 GMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVM--A 298
           G        D P   + E +  +     VD   +  G  +       A       V+   
Sbjct: 230 GFEIADLSLDTP---LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSL 286

Query: 299 IGAA 302
           +   
Sbjct: 287 MQVT 290

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  122 bits (309), Expect = 3e-32
 Identities = 62/279 (22%), Positives = 96/279 (34%), Gaps = 41/279 (14%)

Query: 19  VCWGEGEPWKVEEIQVEPPK--------ATEVRFKMLYASICHTDVLSSKGFPLPLFPRV 70
           V +  G    +    V  PK           V  K++  +IC +D    +G  +     V
Sbjct: 6   VVY-HG-TRDLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPKGHV 63

Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
           LGHE  G V   G +V+ +  GD+V   F   C  C NC    +++C             
Sbjct: 64  LGHEITGEVVEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCE------------ 111

Query: 131 GSSRMSIRGQKLYHIFTCSTMT------EYMVV---DANYVV---KVDPSIDLSLAGFLS 178
                 +        F            EY++V   D   +    K      +     +S
Sbjct: 112 ---NNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLIS 168

Query: 179 CGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE 238
               +GF        V+ GS V + G G VG      AR+ GAA +I  D+NP R     
Sbjct: 169 DILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS 227

Query: 239 AFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG 277
             G       +  P   + + + ++     VD G +  G
Sbjct: 228 DAGFETIDLRNSAP---LRDQIDQILGKPEVDCGVDAVG 263

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score =  117 bits (295), Expect = 3e-30
 Identities = 84/335 (25%), Positives = 144/335 (42%), Gaps = 65/335 (19%)

Query: 16  AAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHE 74
           AA    G   P+             +VRFK+LY  +CH+D+ S K  +   ++P V GHE
Sbjct: 21  AARDQSGHLSPF---NFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHE 77

Query: 75  GVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSS 133
            VG V  +G +VK++  GD V +   +G C  CE+C +++ N C K   T+  +  DG  
Sbjct: 78  IVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDG-- 135

Query: 134 RMSIRGQKLYHIFTCSTMT-----EYMVVDANYVVKVDPSIDLSLAGFLSCG----YSSG 184
                           T+T      +MV +  Y+++   ++ L     L C     YS  
Sbjct: 136 ----------------TITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYS-- 177

Query: 185 FGAAWKEFKVEK-GSSVAVFGLGAVGLGVMDRARIQGA----AKIIGIDKNPC-RKDKGE 238
                K F +++ G  + + GLG  GLG +    ++ A    +K+  I  +P  +++  +
Sbjct: 178 ---PLKYFGLDEPGKHIGIVGLG--GLGHVA---VKFAKAFGSKVTVISTSPSKKEEALK 229

Query: 239 AFGMTDFINPDDEPNKSISELVKEMTHGTG-VDYGFECTGVASLISEALEATKLGKGKVM 297
            FG   F+   D+         ++M    G +D   +       +       K   GK++
Sbjct: 230 NFGADSFLVSRDQ---------EQMQAAAGTLDGIIDTVSAVHPLLPLFGLLKSH-GKLI 279

Query: 298 AIGAANEAKVPLNFPAIAL---GRNLKGTIFGGIK 329
            +GA  +   PL  PA +L    + + G+  GG+K
Sbjct: 280 LVGAPEK---PLELPAFSLIAGRKIVAGSGIGGMK 311

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score =  114 bits (288), Expect = 2e-29
 Identities = 72/332 (21%), Positives = 131/332 (39%), Gaps = 55/332 (16%)

Query: 14  YAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLG 72
             A    +   +P +  +I    P   +V+ ++ Y  +CH+D+   +  +   ++P V G
Sbjct: 26  VGA----YSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPG 81

Query: 73  HEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDG 131
           HE VG V ++GD+V++   GD+V +   +  C+ CE C   + N C     T++   PD 
Sbjct: 82  HEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDE 141

Query: 132 SSRMSIRGQKLYHIFTCSTM---TEYMVVDANYVVKVDPSID-LSLAGFLSCG----YSS 183
                             T+   ++ +VV   YV+++    + L+    L C     YS 
Sbjct: 142 PGH---------------TLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYS- 185

Query: 184 GFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA----AKIIGIDKNPCRKDKGEA 239
                 + ++   G  V V G+G  GLG M    I+ A    A ++    +  +++  +A
Sbjct: 186 ----PLRHWQAGPGKKVGVVGIG--GLGHMG---IKLAHAMGAHVVAFTTSEAKREAAKA 236

Query: 240 FGMTDFINPDDEPNKSISELVKEM-THGTGVDYGFECTGVASLISEALEATKLGKGKVMA 298
            G  + +N  +           EM  H    D+          + +     K   G +  
Sbjct: 237 LGADEVVNSRNA---------DEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRD-GTMTL 286

Query: 299 IGAANEAKVPLN-FPAIALGRNLKGTIFGGIK 329
           +GA          F  I   R + G++ GGI 
Sbjct: 287 VGAPATPHKSPEVFNLIMKRRAIAGSMIGGIP 318

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score =  114 bits (287), Expect = 3e-29
 Identities = 65/335 (19%), Positives = 120/335 (35%), Gaps = 57/335 (17%)

Query: 13  YYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVL 71
               +   W   +     +   +P    ++  K+    +C +D+  + G +     P V+
Sbjct: 10  IAIQSHEDWKNPKKT---KYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVV 66

Query: 72  GHEGVGMVESIGDEV-KELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMP 129
           GHE VG V  +G +    LK G  V +   +  C EC+ C ++    C K+  T+     
Sbjct: 67  GHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYE 126

Query: 130 DGSSRMSIRGQKLYHIFTCSTMT-----EYMVVDANYVVKVDPSIDLSLAGFLSCG---- 180
           DG                   ++      Y+ V  ++VV +  +I   LA  L CG    
Sbjct: 127 DG------------------YVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTV 168

Query: 181 YSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA----AKIIGIDKNPCRKDK 236
           YS              G  V + GLG  G+G M       +    A+   I ++  +++ 
Sbjct: 169 YS-----PLVRNGCGPGKKVGIVGLG--GIGSMG---TLISKAMGAETYVISRSSRKRED 218

Query: 237 GEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEA--LEATKLGKG 294
               G   +I   +E +           +    D    C    + I      +A K+G G
Sbjct: 219 AMKMGADHYIATLEEGDWG-------EKYFDTFDLIVVCASSLTDIDFNIMPKAMKVG-G 270

Query: 295 KVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGIK 329
           ++++I    + ++    P      ++  +  G IK
Sbjct: 271 RIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIK 305

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score =  112 bits (283), Expect = 8e-29
 Identities = 78/312 (25%), Positives = 127/312 (40%), Gaps = 48/312 (15%)

Query: 31  EIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKEL 89
           +         +V   +LYA ICH+D+ S+   +   ++P + GHE  G+++ +G  VK+ 
Sbjct: 21  DFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKF 80

Query: 90  KEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTC 148
           K GD+V +  F+  C+ C+ C       C K  FT+  L     +   + G   Y     
Sbjct: 81  KIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGG---Y----- 132

Query: 149 STMTEYMVVDANYVVKVDPSIDLSLAGFLSCG----YSSGFGAAWKEFKVEKGSSVAVFG 204
              +  +VVD NYV+ VD +  L     L C     YS       K  KV KG+ V V G
Sbjct: 133 ---SNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYS-----PLKFSKVTKGTKVGVAG 184

Query: 205 LGAVGLGVMDRARIQGA----AKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELV 260
            G  GLG M    ++ A    A++    +N  +K    + G+  F     +  + +    
Sbjct: 185 FG--GLGSMA---VKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEEL---- 235

Query: 261 KEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPL--NFPAIALGR 318
                    D+          + + L+      G +  +G       P+   F  I LG 
Sbjct: 236 ---------DFIISTIPTHYDLKDYLKLLTYN-GDLALVGLPPVEVAPVLSVFDFIHLGN 285

Query: 319 -NLKGTIFGGIK 329
             + G++ GGIK
Sbjct: 286 RKVYGSLIGGIK 297

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score =  112 bits (282), Expect = 1e-28
 Identities = 68/315 (21%), Positives = 123/315 (39%), Gaps = 52/315 (16%)

Query: 31  EIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKEL 89
              +      +V  +++   ICHTD+  +K    +  +P V GHE VG V  +G +V + 
Sbjct: 26  TYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKF 85

Query: 90  KEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTC 148
             GDIV +   +G C  C  C  ++   C K  ++++ +  +G                 
Sbjct: 86  TVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQ---------------- 129

Query: 149 STM---TEYMVVDANYVVKVDPSIDLSLAGFLSCG----YSSGFGAAWKEFKVEK-GSSV 200
            T     +  VV   +VVK+   + +  A  L C     YS         F +++ G   
Sbjct: 130 PTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYS-----PLSHFGLKQPGLRG 184

Query: 201 AVFGLGAVGLGVMDRARIQGA----AKIIGIDKNPC-RKDKGEAFGMTDFINPDDEPNKS 255
            + GLG  G+G M    ++ A      +  I  +   R++  +  G  D++   D+    
Sbjct: 185 GILGLG--GVGHMG---VKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQ---- 235

Query: 256 ISELVKEMT-HGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI 314
                 +M+     +DY  +   V   +   L   KL  GK++ +G  N     L    +
Sbjct: 236 -----AKMSELADSLDYVIDTVPVHHALEPYLSLLKLD-GKLILMGVINNPLQFLTPLLM 289

Query: 315 ALGRNLKGTIFGGIK 329
              + + G+  G +K
Sbjct: 290 LGRKVITGSFIGSMK 304

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  111 bits (281), Expect = 2e-28
 Identities = 67/316 (21%), Positives = 107/316 (33%), Gaps = 65/316 (20%)

Query: 17  AVVCWGEGEPWKV---EEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVL 71
           A+V    G+P KV   + +++   + ++VR KML A I  +D+   +G    LP  P V 
Sbjct: 29  ALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVG 88

Query: 72  GHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDG 131
           G+EGV  V ++G  V  LK GD VIP   G                        G     
Sbjct: 89  GNEGVAQVVAVGSNVTGLKPGDWVIPANAG-----------------------LG----- 120

Query: 132 SSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKE 191
                             T     V     +++V   I L  A  L     + +      
Sbjct: 121 ------------------TWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDF 162

Query: 192 FKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGI----DKNPCRKDKGEAFGMTDFI 246
            +++ G SV        VG  V+  A   G  + I +           D+ ++ G    I
Sbjct: 163 EQLQPGDSVIQNASNSGVGQAVIQIAAALG-LRTINVVRDRPDIQKLSDRLKSLGAEHVI 221

Query: 247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK 306
             ++       E+               C G     +E L     G G ++  G    AK
Sbjct: 222 TEEELRRP---EMKNFFKDMPQPRLALNCVG-GKSSTELLRQLARG-GTMVTYGGM--AK 274

Query: 307 VPLNFPA-IALGRNLK 321
            P+     + + ++LK
Sbjct: 275 QPVVASVSLLIFKDLK 290

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  111 bits (279), Expect = 2e-28
 Identities = 76/315 (24%), Positives = 127/315 (40%), Gaps = 34/315 (10%)

Query: 17  AVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLG 72
           AVV    G P   +V ++ V  P   EVR ++  A++ H DV   KG   P    P VLG
Sbjct: 3   AVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLG 62

Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
            +G G+V+++G  V+    GD V+      C  CE C +   NLC    +   G    G 
Sbjct: 63  ADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLC--PRYQILGEHRHG- 119

Query: 133 SRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
                            T  EY+V+    +     ++    A  +   + + +     + 
Sbjct: 120 -----------------TYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKL 162

Query: 193 KVEKGSSVAVFG-LGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE 251
            V  G  V V      V +  +  A++ G A++I    +  +  + +A G  + +N    
Sbjct: 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFG-ARVIATAGSEDKLRRAKALGADETVNYTHP 221

Query: 252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNF 311
                 + V+ +T G G D   + TG A      ++AT  G G++   GA++  +  L F
Sbjct: 222 ---DWPKEVRRLTGGKGADKVVDHTG-ALYFEGVIKATANG-GRIAIAGASSGYEGTLPF 276

Query: 312 PAIALGRNLKGTIFG 326
             +   R L  +I G
Sbjct: 277 AHV-FYRQL--SILG 288

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  107 bits (270), Expect = 7e-27
 Identities = 69/318 (21%), Positives = 115/318 (36%), Gaps = 41/318 (12%)

Query: 17  AVVCWGEG-EPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPL-FPRVLGH 73
                       K+ E  V      ++  + L  S+ + D L  +    L L FP V   
Sbjct: 30  EWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPAS 89

Query: 74  EGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSS 133
           +  G+VE++G  V   + GD VI TF     +     +          +   G    G  
Sbjct: 90  DMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTP-----AYETLGGAHPG-- 142

Query: 134 RMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW---- 189
                            ++EY+V+   + V    S+D + A  L C        AW    
Sbjct: 143 ----------------VLSEYVVLPEGWFVAAPKSLDAAEASTLPCAG----LTAWFALV 182

Query: 190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
           ++  +  G  V V G G V L  +  A+  G A++I    +  + D+  A G    IN  
Sbjct: 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATG-AEVIVTSSSREKLDRAFALGADHGINRL 241

Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPL 309
           +E      E V  +T   G D+  E  G  + + ++L+A     G++  IG     +V  
Sbjct: 242 EE---DWVERVYALTGDRGADHILEIAG-GAGLGQSLKAVAPD-GRISVIGVLEGFEVSG 296

Query: 310 NFPAIALGR-NLKGTIFG 326
               + L    ++G   G
Sbjct: 297 PVGPLLLKSPVVQGISVG 314

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  104 bits (262), Expect = 2e-25
 Identities = 54/350 (15%), Positives = 116/350 (33%), Gaps = 63/350 (18%)

Query: 17  AVVCWGEGEPW---KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPL--------- 64
           A +   + +P     ++++ V      E    ++ +S+ +  V +S   PL         
Sbjct: 45  AGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERY 104

Query: 65  ----------PLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMA 114
                      L   V+G +  G+V   G  V   + GD V+   +    E  +  ++  
Sbjct: 105 GRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTM 164

Query: 115 NLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLA 174
               +  + F      G                   + E  +V +N ++     +    A
Sbjct: 165 LDPEQRIWGFE--TNFG------------------GLAEIALVKSNQLMPKPDHLSWEEA 204

Query: 175 GFLSCGYSSGFGA--AWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP 231
                  S+ +    +     +++G +V ++G  G +G      A   G A  I +  +P
Sbjct: 205 AAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGG-ANPICVVSSP 263

Query: 232 CRKDKGEAFGMTDFIN--------------PDDEPNKSISELVKEMTHGTGVDYGFECTG 277
            + +   A G    I+               D +  K   + ++E+T G  +D  FE  G
Sbjct: 264 QKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPG 323

Query: 278 VASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGR-NLKGTIFG 326
                  ++  T+ G G +    + +      +   + +    + G+ F 
Sbjct: 324 -RETFGASVFVTRKG-GTITTCASTSGYMHEYDNRYLWMSLKRIIGSHFA 371

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  101 bits (253), Expect = 3e-24
 Identities = 53/348 (15%), Positives = 107/348 (30%), Gaps = 60/348 (17%)

Query: 16  AAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPL----------- 64
             V      +  ++ E+ +      EV   ++ +SI +  V S+   P+           
Sbjct: 39  KGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNAR 98

Query: 65  --------PLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANL 116
                        VLG +  G+V   G  V+  K GD VI        E E  T     L
Sbjct: 99  QGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHP-AHVDEQEPATHGDGML 157

Query: 117 CLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF 176
             +    +      G                   + EY VV A+ ++     +    A  
Sbjct: 158 GTEQR-AWGFETNFG------------------GLAEYGVVRASQLLPKPAHLTWEEAAV 198

Query: 177 LSCGYSSGFGA--AWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR 233
                 + +    + +  ++++G  V ++G  G +G   +   +  G    + +  +  +
Sbjct: 199 SPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGG-GIPVAVVSSAQK 257

Query: 234 KDKGEAFGMTDFINPDDEPNKSISEL--------------VKEMTHGTGVDYGFECTGVA 279
           +    A G    IN  +                       +     G   D  FE TG  
Sbjct: 258 EAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTG-R 316

Query: 280 SLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG 326
                ++   + G G V+  G+++      +   + +  + + G+   
Sbjct: 317 VTFGLSVIVARRG-GTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGA 363

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 89.6 bits (223), Expect = 2e-20
 Identities = 64/317 (20%), Positives = 112/317 (35%), Gaps = 61/317 (19%)

Query: 17  AVVCWGEGEPWKV---EEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVL 71
            +     G P  V   E   +EP K  EV  +ML   I  +D++   G        P + 
Sbjct: 7   LIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIP 66

Query: 72  GHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDG 131
           G+EGVG+VE++G  V     G  V+P                             L  +G
Sbjct: 67  GYEGVGIVENVGAFVSRELIGKRVLP-----------------------------LRGEG 97

Query: 132 SSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKE 191
                             T  EY+   A++VV +  SID   A  +     + +    + 
Sbjct: 98  ------------------TWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTET 139

Query: 192 FKVEKGSSVAVFG-LGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD 250
             +++   + V     A+G      ++I    ++I + +N    ++    G    I+   
Sbjct: 140 LNLQRNDVLLVNACGSAIGHLFAQLSQILN-FRLIAVTRNNKHTEELLRLGAAYVIDTST 198

Query: 251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN 310
            P   + E V E+T+G G D   +  G     +E   + +   G  + IG    + + +N
Sbjct: 199 AP---LYETVMELTNGIGADAAIDSIG-GPDGNELAFSLRPN-GHFLTIGLL--SGIQVN 251

Query: 311 FPAIALGRNLKGTIFGG 327
           +  I     +   IF  
Sbjct: 252 WAEIVTKAKVHANIFHL 268

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 54/340 (15%), Positives = 95/340 (27%), Gaps = 85/340 (25%)

Query: 17  AVVCWGEGEPWKV-----EEIQVEPPKATEVRFKMLYASICHTDVLSSKG---------- 61
           AV+    GEP  V      EI  +     EV  K L + +  +D+   +G          
Sbjct: 6   AVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTT 65

Query: 62  -FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY 120
            F         G+EG+  V  +G  V  L+ GD VIP+ +                    
Sbjct: 66  GFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVN------------------- 106

Query: 121 PFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD-----------PSI 169
                G                       T   + + + +  +K+              +
Sbjct: 107 ----FG-----------------------TWRTHALGNDDDFIKLPNPAQSKANGKPNGL 139

Query: 170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVF--GLGAVGLGVMDRARIQGAAKIIGI 227
            ++    +S    + +       K+  G    +   G  AVG       ++     I  I
Sbjct: 140 TINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVI 199

Query: 228 DKNPCRKDKGE---AFGMTDFINPDDEPNKSISELVKEMT--HGTGVDYGFECTGVASLI 282
              P   +        G T  I  D   ++     +KE     G        C G     
Sbjct: 200 RDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVG-GKSS 258

Query: 283 SEALEATKLGKGKVMAIGAANEAKVPLNFPA-IALGRNLK 321
           +          G ++  G    +  P+  P  + + +N  
Sbjct: 259 TGIARKLNNN-GLMLTYGGM--SFQPVTIPTSLYIFKNFT 295

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 78.4 bits (194), Expect = 1e-16
 Identities = 55/301 (18%), Positives = 98/301 (32%), Gaps = 60/301 (19%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIGDEV 86
           +  E     P   E++ +     I   D     G +P P  P  LG E  G+V  +G  V
Sbjct: 17  QAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGV 76

Query: 87  KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIF 146
           K +K GD V+                            +     G+              
Sbjct: 77  KHIKAGDRVV----------------------------YAQSALGA-------------- 94

Query: 147 TCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGA---AWKEFKVEKGSSVAVF 203
                +    + A+    +  +I    A      +  G        K ++++        
Sbjct: 95  ----YSSVHNIIADKAAILPAAISFEQAA---ASFLKGLTVYYLLRKTYEIKPDEQFLFH 147

Query: 204 GL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKE 262
              G VGL     A+  G AK+IG      +       G    IN  +E    + E +KE
Sbjct: 148 AAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKAGAWQVINYREE---DLVERLKE 203

Query: 263 MTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKG 322
           +T G  V   ++  G  +    +L+  +  +G +++ G ++ A   +N   +    +L  
Sbjct: 204 ITGGKKVRVVYDSVGRDTW-ERSLDCLQR-RGLMVSFGNSSGAVTGVNLGILNQKGSLYV 261

Query: 323 T 323
           T
Sbjct: 262 T 262

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 76.1 bits (188), Expect = 8e-16
 Identities = 46/306 (15%), Positives = 84/306 (27%), Gaps = 63/306 (20%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLGHEGVGMVESIGDE 85
           +   I V  P  ++V  K+  ASI  +DV   KG      +  R  G EGVG + + GDE
Sbjct: 38  EQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAGGDE 97

Query: 86  VK-ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYH 144
              +   G  V                              GL   G             
Sbjct: 98  PYAKSLVGKRVA--------------------------FATGLSNWG------------- 118

Query: 145 IFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAW---KEFKVEKGSSVA 201
                +  EY V +A   + +  ++                  A       K E   +  
Sbjct: 119 -----SWAEYAVAEAAACIPLLDTVRDEDG----AAMIVNPLTAIAMFDIVKQEGEKAFV 169

Query: 202 VFG-LGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELV 260
           +      +   ++  A+ +G  + I   +   +    +  G    +N            +
Sbjct: 170 MTAGASQLCKLIIGLAKEEG-FRPIVTVRRDEQIALLKDIGAAHVLNEKAP---DFEATL 225

Query: 261 KEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNL 320
           +E+          +      L S    A      + +  G  +     +  P   + ++ 
Sbjct: 226 REVMKAEQPRIFLDAVT-GPLASAIFNAMPKR-ARWIIYGRLDPDATVIREPGQLIFQHK 283

Query: 321 KGTIFG 326
              I G
Sbjct: 284 --HIEG 287

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 63/301 (20%), Positives = 109/301 (36%), Gaps = 60/301 (19%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIGDEV 86
           +  + + E P    V  +     +   D     G +P P  P  LG EG G+VE++GDEV
Sbjct: 17  EYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEV 76

Query: 87  KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIF 146
              K GD V                             +G  P G+          Y   
Sbjct: 77  TRFKVGDRVA----------------------------YGTGPLGA----------Y--- 95

Query: 147 TCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGA---AWKEFKVEKGSSVAVF 203
                +E  V+    +VK+  S+    A         G        + ++V+ G  +   
Sbjct: 96  -----SEVHVLPEANLVKLADSVSFEQAA---ALMLKGLTVQYLLRQTYQVKPGEIILFH 147

Query: 204 GL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKE 262
              G VG      A+  G AK+IG   +P +    +A G  + I+   E    +++ V E
Sbjct: 148 AAAGGVGSLACQWAKALG-AKLIGTVSSPEKAAHAKALGAWETIDYSHE---DVAKRVLE 203

Query: 263 MTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKG 322
           +T G      ++  G  +    +L++    +G V++ G A+     +N   +A   ++  
Sbjct: 204 LTDGKKCPVVYDGVGQDTW-LTSLDSVAP-RGLVVSFGNASGPVSGVNLGILAQKDSVYV 261

Query: 323 T 323
           T
Sbjct: 262 T 262

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 73.0 bits (180), Expect = 8e-15
 Identities = 65/305 (21%), Positives = 109/305 (35%), Gaps = 62/305 (20%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPL----FPRVLGHEGVGMVESIG 83
             EE++V  P   +VR +     +   D     G P PL     P V+G E   +VE +G
Sbjct: 17  VWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVG 76

Query: 84  DEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLY 143
             V +   G+ V                               L P G+          Y
Sbjct: 77  PGVTDFTVGERVC----------------------------TCLPPLGA----------Y 98

Query: 144 HIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGA---AWKEFKVEKGSSV 200
                   ++  +  A  ++KV   +DL            G  A     +  KV+ G  V
Sbjct: 99  --------SQERLYPAEKLIKVPKDLDLDDVHLAGL-MLKGMTAQYLLHQTHKVKPGDYV 149

Query: 201 AVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISEL 259
            +    G +G  ++  AR  G A +IG      + +     G    IN   +     +E+
Sbjct: 150 LIHAAAGGMGHIMVPWARHLG-ATVIGTVSTEEKAETARKLGCHHTINYSTQ---DFAEV 205

Query: 260 VKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPA-IALGR 318
           V+E+T G GVD  ++  G  +L  ++L+  +  +G   A G A+    P+     + +  
Sbjct: 206 VREITGGKGVDVVYDSIGKDTL-QKSLDCLRP-RGMCAAYGHASGVADPIRVVEDLGVRG 263

Query: 319 NLKGT 323
           +L  T
Sbjct: 264 SLFIT 268

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 67.6 bits (166), Expect = 7e-13
 Identities = 58/311 (18%), Positives = 103/311 (33%), Gaps = 65/311 (20%)

Query: 17  AVVCWGEGEPW--KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLG 72
           A+       P      +++        V   +  A +C  D L +KG        P V G
Sbjct: 24  AIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPG 83

Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
            E  G+V S   E   +K GD V+                                  G 
Sbjct: 84  IETAGVVRSAP-EGSGIKPGDRVM-----------------------------AFNFIGG 113

Query: 133 SRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
                               E + V  + ++   P +D + A  L   Y + + A  +  
Sbjct: 114 ------------------YAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRG 155

Query: 193 KVEKGSSVAVFG-LGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE 251
           ++  G +V V G  G +G   +  A+  G AK+I +       +  ++ G    +  ++ 
Sbjct: 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMG-AKVIAVVNRTAATEFVKSVGADIVLPLEEG 214

Query: 252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN--EAKVPL 309
                ++ V+E T G GVD   +  G      +A+       G+++ +G A      + +
Sbjct: 215 ----WAKAVREATGGAGVDMVVDPIG-GPAFDDAVRTLASE-GRLLVVGFAAGGIPTIKV 268

Query: 310 NFPAIALGRNL 320
           N     L RN 
Sbjct: 269 N---RLLLRNA 276

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 35/304 (11%), Positives = 76/304 (25%), Gaps = 89/304 (29%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF------------------------- 62
            ++ I    P   EV  ++  + +  +D+    G                          
Sbjct: 21  SLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGA 80

Query: 63  -----PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC 117
                        +G+EG G+V   G            +                     
Sbjct: 81  MRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTV--------------------- 119

Query: 118 LKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFL 177
                     +              Y        ++Y  + A+  + +      +     
Sbjct: 120 --------AAIGGAM----------Y--------SQYRCIPADQCLVLPEGATPADG--- 150

Query: 178 SCGYSSGFGAAW---KEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR 233
           +  + +    A    +  ++E  S++        +G  +       G  K++ I +   +
Sbjct: 151 ASSFVNPL-TALGMVETMRLEGHSALVHTAAASNLGQMLNQICLKDGI-KLVNIVRKQEQ 208

Query: 234 KDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGK 293
            D  +A G     N       +  + + E    TG    F+ TG   L  + L   +   
Sbjct: 209 ADLLKAQGAVHVCNAASP---TFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAAL 265

Query: 294 GKVM 297
            K  
Sbjct: 266 NKSA 269

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 58/299 (19%), Positives = 97/299 (32%), Gaps = 60/299 (20%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIGDEV 86
           K E+  V      E+  K  Y  + + +    KG +P    P VLG E  G V + G  V
Sbjct: 24  KYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK-PYVLGREASGTVVAKGKGV 82

Query: 87  KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIF 146
              +                                                G ++ +I 
Sbjct: 83  TNFEV-----------------------------------------------GDQVAYIS 95

Query: 147 TCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGA---AWKEFKVEKGSSVAVF 203
             +      +     V+K+            + G      A     + + V+KG  V +F
Sbjct: 96  NSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLF 155

Query: 204 GL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKE 262
              G VGL +    +++GA   I +     +    + +G    IN   E    I   V +
Sbjct: 156 AAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINASKE---DILRQVLK 211

Query: 263 MTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLK 321
            T+G GVD  F+  G  +    +L A K  KG  ++ G A+    P +       +N+ 
Sbjct: 212 FTNGKGVDASFDSVGKDTF-EISLAALKR-KGVFVSFGNASGLIPPFS-ITRLSPKNIT 267

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 62/320 (19%), Positives = 103/320 (32%), Gaps = 71/320 (22%)

Query: 17  AVVCWGEGEP----WKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRV 70
           AV  +  G P     + + I V  PK  +V  K+    +   +     G     PL P  
Sbjct: 32  AVRVFEFGGPEVLKLRSD-IAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYT 90

Query: 71  LGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPD 130
            G +  G++E++GD     K+GD V                            F      
Sbjct: 91  PGSDVAGVIEAVGDNASAFKKGDRV----------------------------FTSSTIS 122

Query: 131 GSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK 190
           G           Y         EY +   + V K+   +D      +   Y + + A   
Sbjct: 123 GG----------Y--------AEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIH 164

Query: 191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGA----AKIIGIDKNPCRKDKGEAFGMTDFI 246
              V+ G SV V G  + G+G+   A  Q A     KI+G       +      G  +  
Sbjct: 165 SACVKAGESVLVHG-ASGGVGL---AACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVF 220

Query: 247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK 306
           N  +       + +K+     G+D   E       +S+ L     G G+V+ +G+     
Sbjct: 221 NHREVN---YIDKIKKYVGEKGIDIIIEMLA-NVNLSKDLSLLSHG-GRVIVVGSR--GT 273

Query: 307 VPLNFPAIALGRNLKGTIFG 326
           + +N            +I G
Sbjct: 274 IEINPRDTMAKE---SSIIG 290

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 53/294 (18%), Positives = 97/294 (32%), Gaps = 65/294 (22%)

Query: 17  AVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLG 72
           AVV  G G     ++    +  P+  E++ ++    +   D++  +G     P  P V G
Sbjct: 6   AVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPG 65

Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
            E  G+VE++GD VK  + GD V+                               +   +
Sbjct: 66  FECSGIVEALGDSVKGYEIGDRVM-----------------------------AFVNYNA 96

Query: 133 SRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
                     +         E +     +V K+   +  S A      + + +   ++  
Sbjct: 97  ----------W--------AEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVA 138

Query: 193 KVEKGSSVAVFG-LGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF--GMTDFINPD 249
            + +G SV V    G VG  V           + G         K EA    +T   + +
Sbjct: 139 NLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGT----ASTFKHEAIKDSVTHLFDRN 194

Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN 303
            +      + VK ++   GVD   +C        + L   K   G  +  G++N
Sbjct: 195 AD----YVQEVKRIS-AEGVDIVLDCLC-GDNTGKGLSLLKPL-GTYILYGSSN 241

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 55/300 (18%), Positives = 94/300 (31%), Gaps = 69/300 (23%)

Query: 29  VEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLGHEGVGMVESIGDEV 86
             +  V  P   ++  +  +  +  +D+  S G   P    P  +G EG+G V ++G   
Sbjct: 43  SRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSA 102

Query: 87  KE-LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHI 145
                 G  V                                M  GS             
Sbjct: 103 SARYTVGQAVA------------------------------YMAPGSFA----------- 121

Query: 146 FTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFG- 204
                  EY VV A+    V           L  G ++      +   + +G  V V   
Sbjct: 122 -------EYTVVPASIATPVPSVKP-EYLTLLVSGTTAYISLK-ELGGLSEGKKVLVTAA 172

Query: 205 LGAVGLGVMDRARIQGAAKIIGI----DKNPCRKDKGEAFGMTDFINPDDEPNKSISELV 260
            G  G   M  ++      +IG     +K      K  + G    IN   EP   +  ++
Sbjct: 173 AGGTGQFAMQLSKKAK-CHVIGTCSSDEK--SAFLK--SLGCDRPINYKTEP---VGTVL 224

Query: 261 KEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNL 320
           K+  +  GVD  +E  G  ++   A++A    KG+++ IG  +  + P     +  G   
Sbjct: 225 KQ-EYPEGVDVVYESVG-GAMFDLAVDALAT-KGRLIVIGFISGYQTPTGLSPVKAGTLP 281

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 46/330 (13%), Positives = 89/330 (26%), Gaps = 74/330 (22%)

Query: 16  AAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEG 75
            A+      E               +V  ++   +I  +D      F  P     LG + 
Sbjct: 13  TALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFATP--WAFLGTDY 70

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRM 135
            G V ++G +V  ++ GD V                              G   +   R 
Sbjct: 71  AGTVVAVGSDVTHIQVGDRVY-----------------------------GAQNEMCPRT 101

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID------LSLA------GFLSCGYSS 183
             +G            ++Y V       K+   +       L              G   
Sbjct: 102 PDQG----------AFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPL 151

Query: 184 GFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGID-------KNPCRKDK 236
              +A +     K   V V+G G+     +    +Q   ++ G          N    D 
Sbjct: 152 PSPSADQPPTHSKPVYVLVYG-GSTATATV--T-MQ-MLRLSGYIPIATCSPHN---FDL 203

Query: 237 GEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKV 296
            ++ G  +  +       ++++ ++  T    + Y  +C       +    A     G  
Sbjct: 204 AKSRGAEEVFDYRAP---NLAQTIRTYTKN-NLRYALDCITNVESTTFCFAAIGRAGGHY 259

Query: 297 MAIGAANEAKVPLNFPAIALGRNLKGTIFG 326
           +++    E         +     L  TIFG
Sbjct: 260 VSLNPFPEHAATR--KMVTTDWTLGPTIFG 287

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 31/200 (15%), Positives = 55/200 (27%), Gaps = 55/200 (27%)

Query: 17  AVVCWGEGEPW---KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPL-FPRVLG 72
               W          +  + +    A ++  +     I   D    K  P+      V G
Sbjct: 4   QHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPG 63

Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
            +G G++  +G +V     G  V                               L   G 
Sbjct: 64  VDGAGVIVKVGAKVDSKMLGRRV--------------------------AYHTSLKRHG- 96

Query: 133 SRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
                            +  E+ V++ + V+ +  ++    A  L C        AW+ F
Sbjct: 97  -----------------SFAEFTVLNTDRVMTLPDNLSFERAAALPC----PLLTAWQAF 135

Query: 193 ---KVEKGSSVAVFGLGAVG 209
               + K   V + G GAV 
Sbjct: 136 EKIPLTKQREVLIVGFGAVN 155

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 49.8 bits (120), Expect = 3e-07
 Identities = 55/317 (17%), Positives = 90/317 (28%), Gaps = 85/317 (26%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLGHE 74
           A V    G P ++ ++     +  EV  ++    +   D L   G        P + G E
Sbjct: 3   AWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGME 62

Query: 75  GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSR 134
            VG+VE           G                                  L+P G   
Sbjct: 63  VVGVVE-----------GRRYA-----------------------------ALVPQGG-- 80

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFK- 193
                           + E + V    ++ +   +    A      +   F  A+   K 
Sbjct: 81  ----------------LAERVAVPKGALLPLPEGLSPEEAA----AFPVSFLTAYLALKR 120

Query: 194 --VEKGSSVAVFGLGAVGLGVM--DRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD 249
                G  V V    A  LG      AR  G  +++     P +     A G  +     
Sbjct: 121 AQARPGEKVLVQA-AAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYA 178

Query: 250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPL 309
           +          +      G+D   E  G    + E+L     G G+++ IGAA     P+
Sbjct: 179 EV--------PERAKAWGGLDLVLEVRG--KEVEESLGLLAHG-GRLVYIGAAEGEVAPI 227

Query: 310 NFPAIALGRNLKGTIFG 326
                 + RNL   + G
Sbjct: 228 PP-LRLMRRNL--AVLG 241

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 58/319 (18%), Positives = 100/319 (31%), Gaps = 67/319 (21%)

Query: 17  AVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLG 72
           AV     G P    V+E+    P   EV  K+  +++   D++  +G   P P    +LG
Sbjct: 25  AVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILG 84

Query: 73  HEGVGMVESIGDEVK-ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDG 131
            E  G V  +G   +   K GD  +                              L+P G
Sbjct: 85  LEASGHVAELGPGCQGHWKIGDTAM-----------------------------ALLPGG 115

Query: 132 SSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKE 191
                                +Y+ V    ++ +   + L+ A  +   + + F      
Sbjct: 116 G------------------QAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLV 157

Query: 192 FKVEKGSSVAVFGLGAVGLGVMDRARIQGA----AKIIGIDKNPCRKDKGEAFGMTDFIN 247
             V+ G  V +   G  G+G    A IQ      A  +    +  +    E  G     N
Sbjct: 158 GNVQAGDYVLIHA-GLSGVGT---AAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFN 213

Query: 248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKV 307
              E     SE   + T G GV+   +C G  S   + +    L  G+ +  G      +
Sbjct: 214 YKKE---DFSEATLKFTKGAGVNLILDCIG-GSYWEKNVNCLALD-GRWVLYGLMGGGDI 268

Query: 308 PLNFPAIALGRNLKGTIFG 326
                +  L +    ++  
Sbjct: 269 NGPLFSKLLFKRG--SLIT 285

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 17 AVVC--WGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPL------PLFP 68
          A+    +G  +  K+ +      +  ++  K+  AS+   D  +  G            P
Sbjct: 9  AIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLP 68

Query: 69 RVLGHEGVGMVESIGDEVKELKEGDIVI 96
            LG++  G V  +G +V  +  GD V+
Sbjct: 69 SGLGYDFSGEVIELGSDVNNVNIGDKVM 96

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 17 AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPL---FPRVLGH 73
          A V      P+ + ++    P   +V  ++  +     D     G         P +LG 
Sbjct: 10 AAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGM 69

Query: 74 EGVGMVESIGDEVKELKEGDIV 95
          +  G V ++G EV   + GD V
Sbjct: 70 DLAGTVVAVGPEVDSFRVGDAV 91

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 53/273 (19%), Positives = 79/273 (28%), Gaps = 80/273 (29%)

Query: 27  WKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDEV 86
              E     P    EVR  M  A +   D L + G   P     LG EG G+V   G  V
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGM-YPG-VASLGSEGAGVVVETGPGV 283

Query: 87  KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIF 146
             L  GD V+                             G++P                 
Sbjct: 284 TGLAPGDRVM-----------------------------GMIPKA--------------- 299

Query: 147 TCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF----KVEKGSSVAV 202
                    V D   V ++      + A  +   + +    A+        +  G S+ V
Sbjct: 300 ----FGPLAVADHRMVTRIPAGWSFARAASVPIVFLT----AYYALVDLAGLRPGESLLV 351

Query: 203 -FGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD---FINPDDEPNKSISE 258
               G VG+  +  AR  G A++         +DK +A  ++                 +
Sbjct: 352 HSAAGGVGMAAIQLARHLG-AEVYAT----ASEDKWQAVELSREHLA----SSRTCDFEQ 402

Query: 259 LVKEMTHGTGVDYGFECTGVA--SLISEALEAT 289
                T G GVD       V   SL  E  +A+
Sbjct: 403 QFLGATGGRGVD-------VVLNSLAGEFADAS 428

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 22 GEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVES 81
           +G  +K   + +  PK  E+  K+   S+   D            PRVLG + +G+VES
Sbjct: 15 SDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDVSK-APRVLGFDAIGVVES 73

Query: 82 IGDEVKELKEGDIV 95
          +G+EV    +GDIV
Sbjct: 74 VGNEVTMFNQGDIV 87

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 22  GEGEPWKVEEIQVEPP--KATEVRFKMLYASICHTDV-LSSKGFPLPLFPRVLGHEGVGM 78
              +   + +I++  P     ++  ++   S+   D  +     P     +V+G++  G+
Sbjct: 33  PITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGI 92

Query: 79  VESIGDEVKELKEGDIV 95
           V ++G +V   + GD V
Sbjct: 93  VSAVGPDVTLFRPGDEV 109

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 58/319 (18%), Positives = 99/319 (31%), Gaps = 69/319 (21%)

Query: 17  AVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLG 72
            V     G P    + +  +      EV  +     +   D+   +G   P      +LG
Sbjct: 31  FVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILG 90

Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
            E  G +  +G  V     GD V                              GL   G+
Sbjct: 91  LELSGEIVGVGPGVSGYAVGDKVC-----------------------------GLANGGA 121

Query: 133 SRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
                               EY ++ A  ++      D   A  L   + + +   ++  
Sbjct: 122 ------------------YAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMA 163

Query: 193 KVEKGSSVAVFGLGAVGLGVMDRARIQGA----AKIIGIDKNPCRKDKGEAFGMTDFINP 248
            + +G SV + G G  G+G      IQ A    A++     +  + +  E  G    IN 
Sbjct: 164 GLTEGESVLIHG-GTSGIGT---TAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINY 219

Query: 249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVP 308
             E     + ++K  T G GVD   +  G A+     + +     G +  I     A   
Sbjct: 220 RSE---DFAAVIKAET-GQGVDIILDMIG-AAYFERNIASLAKD-GCLSIIAFLGGAVAE 273

Query: 309 -LNFPAIALGRNLKGTIFG 326
            +N   I + + L  T+ G
Sbjct: 274 KVNLSPI-MVKRL--TVTG 289

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 16/77 (20%)

Query: 35  EPPKATEVRFKMLYASICHTDVLSSKGFPLPL----------------FPRVLGHEGVGM 78
                 EV  K+  AS+   DV    G+                    FP  LG +  G+
Sbjct: 46  IIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGV 105

Query: 79  VESIGDEVKELKEGDIV 95
           V   G +VK  K GD V
Sbjct: 106 VMECGLDVKYFKPGDEV 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.96
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.86
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.35
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.05
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.84
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.66
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.64
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.64
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.61
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.55
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.34
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.34
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.32
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.28
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.22
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.16
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.11
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.1
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.08
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.05
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.01
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.0
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.95
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.9
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.88
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.86
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.83
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.82
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.74
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.73
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.7
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.66
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.57
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.56
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.55
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.51
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.5
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.46
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.45
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.42
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.42
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.42
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.39
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.38
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.37
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.35
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.34
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.33
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.32
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.3
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.29
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.28
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.27
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.24
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.24
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.22
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.22
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.22
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.21
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.21
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.21
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.2
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.19
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.17
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.17
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.16
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.16
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.16
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.16
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.15
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.15
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.15
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.14
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.14
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.14
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.13
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.12
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.12
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.12
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.11
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.11
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.11
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.11
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.1
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.09
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.08
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.08
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.06
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.06
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.05
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.05
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.05
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.05
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.05
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.04
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.04
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.04
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.03
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.03
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.03
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.02
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.02
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.02
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.02
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.01
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.01
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.01
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.0
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.99
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.98
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.98
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.98
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.98
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.97
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.97
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.96
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.96
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.95
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.95
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.95
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.95
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.95
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.94
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.91
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.91
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.91
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.91
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.91
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.91
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.9
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.9
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	96.9
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.9
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.89
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.89
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.89
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.87
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.87
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.87
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.86
1spx_A	278	Short-chain reductase family member (5L265); paral	96.86
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.86
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.84
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.84
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.84
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.84
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.84
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.83
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.83
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.83
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.82
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.82
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.81
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.8
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.79
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.79
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.79
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.79
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.79
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.78
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.78
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.77
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.77
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.77
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.77
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.77
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.77
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.77
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.76
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.76
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.75
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.75
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.75
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.74
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.74
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.74
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.72
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.71
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.71
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.71
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.71
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.7
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.7
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.7
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.7
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.69
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.69
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.69
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.69
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.68
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.68
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.68
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.67
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.67
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.66
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.66
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.66
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.66
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.66
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.66
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.66
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.65
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.65
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.65
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.64
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.64
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.63
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.63
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.63
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.63
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.62
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.62
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.62
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.62
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.62
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.61
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.61
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.61
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.61
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.61
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.61
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.61
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.6
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.6
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.6
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.59
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.59
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.58
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.57
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.56
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.55
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.55
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.55
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.54
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.54
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.54
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.53
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.53
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.52
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.52
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.52
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.51
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.51
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.51
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.51
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.51
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.5
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.5
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.49
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.49
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.49
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.49
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.48
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.48
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.48
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.48
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.48
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.47
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.47
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.47
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.46
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.46
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.46
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.46
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.46
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.46
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.45
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.45
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.44
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.44
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.43
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.43
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.43
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.43
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.43
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.42
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.42
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.4
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.4
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.4
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.4
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.39
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.38
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.37
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.37
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.36
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.35
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.35
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.35
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.34
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.34
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.33
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.33
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.32
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.32
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.31
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.31
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.31
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.29
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.29
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.29
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.26
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.24
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.24
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.24
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.23
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	96.23
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.23
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	96.21
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.21
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	96.2
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	96.2
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.2
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.19
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.17
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.17
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	96.16
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.16
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.16
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.15
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.14
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.13
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.12
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.12
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.12
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.11
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.11
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.1
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.09
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.09
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.07
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.07
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.06
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.06
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.05
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	96.05
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.05
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.04
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.04
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.04
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.03
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.03
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.03
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.03
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.02
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.02
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.99
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	95.99
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.98
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.98
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	95.98
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	95.98
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.97
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.97
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.97
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	95.97
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.97
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	95.97
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	95.97
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	95.96
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.96
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.94
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	95.94
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.94
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.93
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	95.93
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	95.93
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	95.93
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	95.92
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	95.91
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	95.9
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	95.9
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.9
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.89
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.89
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	95.89
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	95.89
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	95.88
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.88
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.88
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.86
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.85
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.84
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	95.83
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.83
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	95.82
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	95.81
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.81
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	95.8
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.79
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	95.79
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.78
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.76
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	95.76
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.76
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	95.76
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.76
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	95.76
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	95.75
2i7c_A	283	Spermidine synthase; transferase, structural genom	95.74
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	95.74
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	95.73
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.72
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	95.7
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.69
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	95.68
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	95.68
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.67
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.67
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.67
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	95.66
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.66
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	95.65
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.65
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	95.65
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.64
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.63
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.63
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	95.63
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	95.62
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.61
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	95.61
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	95.61
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.6
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	95.6
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	95.59
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	95.58
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.58
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	95.56
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	95.56

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=8.6e-58  Score=433.76  Aligned_cols=319  Identities=42%  Similarity=0.768  Sum_probs=287.5

Q ss_pred             cccccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCC
Q 043260            8 SFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEV   86 (332)
Q Consensus         8 ~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   86 (332)
                      +..++++|||+++++++++++++++|.|+|+++||||||++++||++|++ +.|..+...+|.++|||++|+|+++|++|
T Consensus         2 ~~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v   81 (378)
T 3uko_A            2 TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   81 (378)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTC
T ss_pred             CcccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCC
Confidence            45678999999999998889999999999999999999999999999999 88887777899999999999999999999


Q ss_pred             CCCCCCCEEEeecccCCCCCcccccCCcccCCCCcccc-cccc-CCCCCcccccccceecccccCCceeeEEecCCceEE
Q 043260           87 KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVK  164 (332)
Q Consensus        87 ~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~-~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~  164 (332)
                      ++|++||||++.+..+|+.|++|++|++++|++..... .|+. .+|...+..+|...++....|+|+||+.++++.+++
T Consensus        82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~  161 (378)
T 3uko_A           82 TEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAK  161 (378)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEE
T ss_pred             CcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEE
Confidence            99999999999999999999999999999999975422 3544 566666777777777777778999999999999999


Q ss_pred             cCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe
Q 043260          165 VDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD  244 (332)
Q Consensus       165 lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~  244 (332)
                      +|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++
T Consensus       162 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  241 (378)
T 3uko_A          162 IDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNE  241 (378)
T ss_dssp             CCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCE
T ss_pred             CCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcE
Confidence            99999999999999999999999888899999999999999999999999999999978999999999999999999999


Q ss_pred             eeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEe
Q 043260          245 FINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGT  323 (332)
Q Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~  323 (332)
                      ++++.+ ...++.+.+++++++ ++|+|||++|++..+..+++++++++|+++.+|.... ...+++...++.++++.|+
T Consensus       242 vi~~~~-~~~~~~~~i~~~~~g-g~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~  319 (378)
T 3uko_A          242 FVNPKD-HDKPIQEVIVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGT  319 (378)
T ss_dssp             EECGGG-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEEC
T ss_pred             EEcccc-CchhHHHHHHHhcCC-CCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHhcCcEEEEE
Confidence            999872 127788999999988 9999999999988899999999992299999998764 6677888877779999999


Q ss_pred             ecccc
Q 043260          324 IFGGI  328 (332)
Q Consensus       324 ~~~~~  328 (332)
                      .++.+
T Consensus       320 ~~~~~  324 (378)
T 3uko_A          320 AFGGF  324 (378)
T ss_dssp             SGGGC
T ss_pred             EecCC
Confidence            87754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=5.2e-55  Score=413.94  Aligned_cols=315  Identities=40%  Similarity=0.700  Sum_probs=270.3

Q ss_pred             ccccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCC
Q 043260            9 FLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus         9 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      .++|++|||+++++++++++++++|.|+|+++||||||++++||++|++ +.|.++ ..+|.++|||++|+|+++|++|+
T Consensus         4 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~   82 (373)
T 1p0f_A            4 AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAGVT   82 (373)
T ss_dssp             TTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECTTCC
T ss_pred             cCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-CCCCcccCcCceEEEEEECCCCC
Confidence            4678999999999998779999999999999999999999999999999 888665 56899999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCCceEEcC
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD  166 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP  166 (332)
                      +|++||||++.+..+|+.|++|++|++++|++..... .|+..+|..++..+|..+++....|+|+||+.++++.++++|
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  162 (373)
T 1p0f_A           83 CVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKID  162 (373)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEEC
T ss_pred             ccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEchhhEEECC
Confidence            9999999999999999999999999999999865321 144334332222333333333345789999999999999999


Q ss_pred             CCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          167 PSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       167 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      ++++++ ||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++
T Consensus       163 ~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi  241 (373)
T 1p0f_A          163 PKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECL  241 (373)
T ss_dssp             TTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEE
T ss_pred             CCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEE
Confidence            999999 9999999999999987888999999999999999999999999999987899999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEEee
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g~~  324 (332)
                      ++.+ ..+++.+.+++++++ ++|+|||++|+++.+..++++++++.|+++.+|.... ...++++..++. + ++.|+.
T Consensus       242 ~~~~-~~~~~~~~i~~~t~g-g~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~  318 (373)
T 1p0f_A          242 NPKD-YDKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGR-SLKGSV  318 (373)
T ss_dssp             CGGG-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTC-EEEECS
T ss_pred             eccc-ccchHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhccCc-eEEeec
Confidence            8763 114688888888887 9999999999977899999999982299999998764 456777777766 6 999987


Q ss_pred             cccc
Q 043260          325 FGGI  328 (332)
Q Consensus       325 ~~~~  328 (332)
                      .+.+
T Consensus       319 ~~~~  322 (373)
T 1p0f_A          319 FGGF  322 (373)
T ss_dssp             GGGC
T ss_pred             cCCc
Confidence            6543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=1.5e-54  Score=411.15  Aligned_cols=314  Identities=39%  Similarity=0.723  Sum_probs=268.0

Q ss_pred             ccccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCC
Q 043260            9 FLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus         9 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      .+.||+|||+++++++.+++++++|.|+|+++||||||++++||++|++ +.|. +...+|.++|||++|+|+++|++|+
T Consensus         3 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~~~P~v~GhE~~G~V~~vG~~v~   81 (376)
T 1e3i_A            3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGVT   81 (376)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCCCCCcccCccccEEEEEECCCCc
Confidence            4678999999999998679999999999999999999999999999999 7776 4457899999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCc----ccc-ccccCCCCCcccccccceecccccCCceeeEEecCCce
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYP----FTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYV  162 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~----~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v  162 (332)
                      +|++||||++.+..+|++|++|++|++++|++..    ... .|+..+|..++..+|.+.++....|+|+||+.++++.+
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  161 (376)
T 1e3i_A           82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (376)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             cCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEEEeccccE
Confidence            9999999999999999999999999999999864    111 14433333222222222223333478999999999999


Q ss_pred             EEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC
Q 043260          163 VKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       163 ~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      +++|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+
T Consensus       162 ~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa  241 (376)
T 1e3i_A          162 ARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA  241 (376)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             EECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence            99999999999999999999999998788899999999999999999999999999998789999999999999999999


Q ss_pred             CeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEE
Q 043260          243 TDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLK  321 (332)
Q Consensus       243 ~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~  321 (332)
                      ++++++.+ ..+++.+.+++++++ ++|+|||++|+...+..++++++++.|+++.+|... ...++++..++. + ++.
T Consensus       242 ~~vi~~~~-~~~~~~~~v~~~~~~-g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~-~~~~~~~~~~~~~~-~i~  317 (376)
T 1e3i_A          242 TDCLNPRE-LDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV-DEMTIPTVDVILGR-SIN  317 (376)
T ss_dssp             SEEECGGG-CSSCHHHHHHHHHTS-CBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSS-SEEEEEHHHHHTTC-EEE
T ss_pred             cEEEcccc-ccchHHHHHHHHhCC-CccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCC-CccccCHHHhhccC-eEE
Confidence            99998763 114678888888887 999999999997789999999998328999999844 556778777776 6 999


Q ss_pred             Eeeccc
Q 043260          322 GTIFGG  327 (332)
Q Consensus       322 g~~~~~  327 (332)
                      |+..+.
T Consensus       318 g~~~~~  323 (376)
T 1e3i_A          318 GTFFGG  323 (376)
T ss_dssp             ECSGGG
T ss_pred             EEecCC
Confidence            987654

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=3e-54  Score=408.80  Aligned_cols=315  Identities=39%  Similarity=0.688  Sum_probs=269.2

Q ss_pred             ccccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCC
Q 043260            9 FLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus         9 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      ..+|++|||+++++++++++++++|.|+|++|||||||++++||++|++ +.|.++. .+|.++|||++|+|+++|++|+
T Consensus         3 ~~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~P~v~GhE~~G~V~~vG~~v~   81 (374)
T 2jhf_A            3 AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEGVT   81 (374)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTTCC
T ss_pred             CCCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC-CCCcccCcCceEEEEEECCCCC
Confidence            4568999999999998779999999999999999999999999999999 8876553 3899999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCCceEEcC
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD  166 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP  166 (332)
                      +|++||||++.+..+|+.|++|++|++++|++..... .|+..+|..++..+|..+++....|+|+||+.++++.++++|
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  161 (374)
T 2jhf_A           82 TVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKID  161 (374)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEchHHeEECC
Confidence            9999999999999999999999999999999875321 144333332222223223333335789999999999999999


Q ss_pred             CCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          167 PSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       167 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      +++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++
T Consensus       162 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi  241 (374)
T 2jhf_A          162 AASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV  241 (374)
T ss_dssp             TTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEE
T ss_pred             CCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEe
Confidence            99999999999999999999987888999999999999999999999999999987899999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEEee
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g~~  324 (332)
                      ++.+ ..+++.+.+++++++ ++|+|||++|++..+..++++++++.|+++.+|.... ...++++..++. + ++.|++
T Consensus       242 ~~~~-~~~~~~~~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~  318 (374)
T 2jhf_A          242 NPQD-YKKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGAI  318 (374)
T ss_dssp             CGGG-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECS
T ss_pred             cccc-cchhHHHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHhcCC-eEEEec
Confidence            8763 114578888888877 9999999999977899999999983289999998764 456777777766 6 999987


Q ss_pred             ccc
Q 043260          325 FGG  327 (332)
Q Consensus       325 ~~~  327 (332)
                      .+.
T Consensus       319 ~~~  321 (374)
T 2jhf_A          319 FGG  321 (374)
T ss_dssp             GGG
T ss_pred             cCC
Confidence            654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=1.5e-54  Score=410.75  Aligned_cols=315  Identities=44%  Similarity=0.757  Sum_probs=269.6

Q ss_pred             cccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCC
Q 043260           10 LKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        10 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      .+||+|||+++++++++++++++|.|+|+++||||||+++|||++|++ +.|.++...+|.++|||++|+|+++|++|++
T Consensus         2 ~~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~   81 (373)
T 2fzw_A            2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (373)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCCC
Confidence            468899999999998779999999999999999999999999999999 8887665678999999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      |++||||++.+..+|+.|.+|++|++++|++..... .|+..+|..++..+|..+++....|+|+||+.++++.++++|+
T Consensus        82 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~  161 (373)
T 2fzw_A           82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDP  161 (373)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCT
T ss_pred             CCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEchhheEECCC
Confidence            999999999999999999999999999999864211 1333333322222333333333457899999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeC
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN  247 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~  247 (332)
                      ++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++++
T Consensus       162 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~  241 (373)
T 2fzw_A          162 LAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECIN  241 (373)
T ss_dssp             TSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEEC
T ss_pred             CCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEec
Confidence            99999999999999999999878889999999999999999999999999999878999999999999999999999998


Q ss_pred             CCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEEeec
Q 043260          248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      +.+ ..+++.+.+++++++ ++|+|||++|+...+..++++++++.|+++.+|.... ...++++..++. + ++.|+.+
T Consensus       242 ~~~-~~~~~~~~v~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~  318 (373)
T 2fzw_A          242 PQD-FSKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTAF  318 (373)
T ss_dssp             GGG-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSG
T ss_pred             ccc-ccccHHHHHHHHhCC-CCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEecc
Confidence            763 114678888888887 9999999999977899999999983299999998764 456777777766 6 9999876


Q ss_pred             cc
Q 043260          326 GG  327 (332)
Q Consensus       326 ~~  327 (332)
                      +.
T Consensus       319 ~~  320 (373)
T 2fzw_A          319 GG  320 (373)
T ss_dssp             GG
T ss_pred             CC
Confidence            54

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=1.9e-54  Score=409.61  Aligned_cols=292  Identities=24%  Similarity=0.401  Sum_probs=264.8

Q ss_pred             ecccccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCC
Q 043260            7 ISFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus         7 ~~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      .+..+|++|||+++++++. ++++++|.|+|++|||||||++++||++|+. +.|.++ ..+|.++|||++|+|+++|++
T Consensus        16 ~~~~~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~p~v~G~e~~G~V~~vG~~   93 (370)
T 4ej6_A           16 ENLYFQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP-STPPVTLGHEFCGIVVEAGSA   93 (370)
T ss_dssp             -----CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSEECCCSEEEEEEEECTT
T ss_pred             cccccchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC-CCCCeecCcceEEEEEEECCC
Confidence            4457789999999999875 9999999999999999999999999999999 888763 578999999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEc
Q 043260           86 VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKV  165 (332)
Q Consensus        86 v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~l  165 (332)
                      |++|++||||++.+..+|+.|.+|++|++++|++....  |+..+|                  +|+||++++++.++++
T Consensus        94 v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~--g~~~~G------------------~~aey~~v~~~~~~~~  153 (370)
T 4ej6_A           94 VRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAI--GIHRDG------------------GFAEYVLVPRKQAFEI  153 (370)
T ss_dssp             CCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEB--TTTBCC------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCcccc--CCCCCC------------------cceEEEEEchhhEEEC
Confidence            99999999999999999999999999999999997665  666555                  4999999999999999


Q ss_pred             CCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee
Q 043260          166 DPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF  245 (332)
Q Consensus       166 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v  245 (332)
                      |+++++++|| +..++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++.+
T Consensus       154 P~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v  231 (370)
T 4ej6_A          154 PLTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATAT  231 (370)
T ss_dssp             CTTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEE
T ss_pred             CCCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEE
Confidence            9999999998 556999999998 78899999999999999999999999999999889999999999999999999999


Q ss_pred             eCCCCCCCchHHHHHHH---hcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEE
Q 043260          246 INPDDEPNKSISELVKE---MTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNL  320 (332)
Q Consensus       246 ~~~~~~~~~~~~~~~~~---~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i  320 (332)
                      +++.+   .++.+.+++   ++++ ++|+|||++|++..+..++++++++ |+++.+|.... ...+++...++. ++++
T Consensus       232 i~~~~---~~~~~~i~~~~~~~~g-g~Dvvid~~G~~~~~~~~~~~l~~~-G~vv~~G~~~~~~~~~~~~~~~~~~~~~i  306 (370)
T 4ej6_A          232 VDPSA---GDVVEAIAGPVGLVPG-GVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFRELRV  306 (370)
T ss_dssp             ECTTS---SCHHHHHHSTTSSSTT-CEEEEEECSCCHHHHHHHHHHEEEE-EEEEECSCCCTTCCCCCCHHHHHHTTCEE
T ss_pred             ECCCC---cCHHHHHHhhhhccCC-CCCEEEECCCCHHHHHHHHHHhccC-CEEEEEeccCCCCccccCHHHHHhCCcEE
Confidence            99987   888888888   7777 9999999999878999999999998 99999998775 467888888877 9999


Q ss_pred             EEeeccc
Q 043260          321 KGTIFGG  327 (332)
Q Consensus       321 ~g~~~~~  327 (332)
                      .|++.+.
T Consensus       307 ~g~~~~~  313 (370)
T 4ej6_A          307 LGSFINP  313 (370)
T ss_dssp             EECCSCT
T ss_pred             EEeccCh
Confidence            9998654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.5e-53  Score=404.13  Aligned_cols=314  Identities=39%  Similarity=0.686  Sum_probs=268.2

Q ss_pred             ccccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc--ccCCCCCCCCCcccccceeEEEEEeCCCC
Q 043260            9 FLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL--SSKGFPLPLFPRVLGHEGVGMVESIGDEV   86 (332)
Q Consensus         9 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~--~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   86 (332)
                      ...|++|||+++++++++++++++|.|+|+++||||||++++||++|++  +.|.++ ..+|.++|||++|+|+++|++|
T Consensus         3 ~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~V   81 (374)
T 1cdo_A            3 VGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPGV   81 (374)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTTC
T ss_pred             CCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-CCCCcccCccceEEEEEECCCC
Confidence            4678999999999998779999999999999999999999999999997  455544 5689999999999999999999


Q ss_pred             CCCCCCCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCCceEEc
Q 043260           87 KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKV  165 (332)
Q Consensus        87 ~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~l  165 (332)
                      ++|++||||++.+..+|+.|++|++|++++|++..... .|+..+|..++..+|...++....|+|+||+.++++.++++
T Consensus        82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~  161 (374)
T 1cdo_A           82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKI  161 (374)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEEC
T ss_pred             ccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEchhheEEC
Confidence            99999999999999999999999999999999865321 14433443222223333333334578999999999999999


Q ss_pred             CCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee
Q 043260          166 DPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF  245 (332)
Q Consensus       166 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v  245 (332)
                      |+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++
T Consensus       162 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v  241 (374)
T 1cdo_A          162 DPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDF  241 (374)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEE
T ss_pred             CCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceE
Confidence            99999999999999999999998788899999999999999999999999999998789999999999999999999999


Q ss_pred             eCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCC-cEEEEEcCCCCCcccCChHhHhc-CcEEEEe
Q 043260          246 INPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGK-GKVMAIGAANEAKVPLNFPAIAL-GRNLKGT  323 (332)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~  323 (332)
                      +++.+ ..+++.+.+++++++ ++|+|||++|.+..+..+++++++ + |+++.+|.......++++..++. + ++.|+
T Consensus       242 i~~~~-~~~~~~~~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~-~i~g~  317 (374)
T 1cdo_A          242 VNPND-HSEPISQVLSKMTNG-GVDFSLECVGNVGVMRNALESCLK-GWGVSVLVGWTDLHDVATRPIQLIAGR-TWKGS  317 (374)
T ss_dssp             ECGGG-CSSCHHHHHHHHHTS-CBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCSSSCEEECHHHHHTTC-EEEEC
T ss_pred             Eeccc-cchhHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhc-CCcEEEEEcCCCCCCcccCHHHHhcCC-eEEEE
Confidence            98763 114578888888887 999999999997789999999998 5 99999998764356678777766 6 99998


Q ss_pred             eccc
Q 043260          324 IFGG  327 (332)
Q Consensus       324 ~~~~  327 (332)
                      .++.
T Consensus       318 ~~~~  321 (374)
T 1cdo_A          318 MFGG  321 (374)
T ss_dssp             SGGG
T ss_pred             ecCC
Confidence            7654

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.6e-54  Score=407.84  Aligned_cols=309  Identities=30%  Similarity=0.573  Sum_probs=264.5

Q ss_pred             cceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           12 IYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      +|+|||+++++++++++++++|.|+|+++||||||++++||++|++ +.|.++ ..+|.++|||++|+|+++|++|++|+
T Consensus         4 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~   82 (371)
T 1f8f_A            4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQ   82 (371)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             cccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC-CCCCcccCcccceEEEEeCCCCCCCC
Confidence            5789999999988679999999999999999999999999999999 887654 46899999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccc-cccccCCCCCccc-ccccce-ecccccCCceeeEEecCCceEEcCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMS-IRGQKL-YHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~g~~~~~-~~~~~~-~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      +||||++.+ .+|++|++|++|++++|++.... ..|...+|...+. .+|... .+....|+|+||+.++++.++++|+
T Consensus        83 ~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP~  161 (371)
T 1f8f_A           83 VGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK  161 (371)
T ss_dssp             TTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred             CCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEECCC
Confidence            999999999 99999999999999999976421 0121112211100 001000 0112347899999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeC
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN  247 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~  247 (332)
                      ++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++++
T Consensus       162 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~  241 (371)
T 1f8f_A          162 DVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVIN  241 (371)
T ss_dssp             TSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEE
T ss_pred             CCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEec
Confidence            99999999999999999999977889999999999999999999999999999867999999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEEeec
Q 043260          248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      +.+   .++.+.+++++++ ++|+|||++|.+..+..++++++++ |+++.+|.... ...++++..++. ++++.|++.
T Consensus       242 ~~~---~~~~~~~~~~~~g-g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~  316 (371)
T 1f8f_A          242 SKT---QDPVAAIKEITDG-GVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVE  316 (371)
T ss_dssp             TTT---SCHHHHHHHHTTS-CEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSG
T ss_pred             CCc---cCHHHHHHHhcCC-CCcEEEECCCCHHHHHHHHHHHhcC-CEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCC
Confidence            887   7888889998888 9999999999977899999999998 99999998764 456788777666 999999987


Q ss_pred             cc
Q 043260          326 GG  327 (332)
Q Consensus       326 ~~  327 (332)
                      +.
T Consensus       317 ~~  318 (371)
T 1f8f_A          317 GS  318 (371)
T ss_dssp             GG
T ss_pred             CC
Confidence            64

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=1.4e-53  Score=399.13  Aligned_cols=286  Identities=26%  Similarity=0.461  Sum_probs=261.3

Q ss_pred             eeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           14 YAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        14 ~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      +|||+++++++++++++++|.|+|++|||||||++++||++|++ +.|.++. ..+|.++|||++|+|+++|++|++|++
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v   81 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE   81 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence            59999999988789999999999999999999999999999999 8887664 568999999999999999999999999


Q ss_pred             CCEE-EeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           92 GDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        92 GdrV-~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      |||| +..+..+|+.|.+|++|++++|++....  |+..+|+                  |+||+.++++.++++|++++
T Consensus        82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~--g~~~~G~------------------~aey~~v~~~~~~~iP~~~~  141 (340)
T 3s2e_A           82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQNT--GYSVNGG------------------YGEYVVADPNYVGLLPDKVG  141 (340)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEEB--TTTBCCS------------------SBSEEEECTTTSEECCTTSC
T ss_pred             CCEEEecCCCCCCCCChHHhCcCcccCcccccc--CCCCCCc------------------ceeEEEechHHEEECCCCCC
Confidence            9999 4577899999999999999999998765  6666664                  99999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      +++||.+++++.|||+++ +..++++|++|||+|+|++|++++|+++.+|+ +|++++++++|+++++++|+++++++++
T Consensus       142 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~~~  219 (340)
T 3s2e_A          142 FVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNARD  219 (340)
T ss_dssp             HHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeCCC
Confidence            999999999999999998 67899999999999999999999999999999 9999999999999999999999999987


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecccc
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGGI  328 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~~  328 (332)
                         .++.+.+++ +.+ ++|+|||++++.+.++.++++++++ |+++.+|... ...+++...++. ++++.|+..+..
T Consensus       220 ---~~~~~~~~~-~~g-~~d~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~~~~  291 (340)
T 3s2e_A          220 ---TDPAAWLQK-EIG-GAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPP-GDFGTPIFDVVLKGITIRGSIVGTR  291 (340)
T ss_dssp             ---SCHHHHHHH-HHS-SEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCS-SEEEEEHHHHHHTTCEEEECCSCCH
T ss_pred             ---cCHHHHHHH-hCC-CCCEEEEeCCCHHHHHHHHHHhccC-CEEEEeCCCC-CCCCCCHHHHHhCCeEEEEEecCCH
Confidence               788888888 445 8999999999988999999999998 9999999877 456677777666 999999987643

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=1.8e-53  Score=399.72  Aligned_cols=289  Identities=26%  Similarity=0.360  Sum_probs=247.0

Q ss_pred             ccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccC-CCC--CCCCCcccccceeEEEEEeCCCC
Q 043260           11 KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSK-GFP--LPLFPRVLGHEGVGMVESIGDEV   86 (332)
Q Consensus        11 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g-~~~--~~~~p~v~G~e~~G~Vv~vG~~v   86 (332)
                      ||++|||+++++++..++++++|.|+|+++||||||++++||++|++ +.| .++  ...+|.++|||++|+|+++|++|
T Consensus         1 ~m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v   80 (348)
T 2d8a_A            1 MSEKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGV   80 (348)
T ss_dssp             --CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTC
T ss_pred             CCCcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCC
Confidence            46789999999988559999999999999999999999999999999 877 432  24689999999999999999999


Q ss_pred             CCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcC
Q 043260           87 KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD  166 (332)
Q Consensus        87 ~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP  166 (332)
                      ++|++||||++.+..+|+.|++|++|++++|++....  |...+|                  +|+||+.++++.++++|
T Consensus        81 ~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~--g~~~~G------------------~~aey~~v~~~~~~~iP  140 (348)
T 2d8a_A           81 EGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIF--GVDTDG------------------VFAEYAVVPAQNIWKNP  140 (348)
T ss_dssp             CSCCTTCEEEECCEECCSCCC------------CEET--TTSSCC------------------SSBSEEEEEGGGEEECC
T ss_pred             CcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCee--cCCCCC------------------cCcceEEeChHHeEECC
Confidence            9999999999999999999999999999999987654  554444                  59999999999999999


Q ss_pred             CCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          167 PSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       167 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      +++++++||+++ ++.|||+++ +.+++ +|++|||+|+|++|++++|+++.+|+.+|++++++++++++++++|+++++
T Consensus       141 ~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~  217 (348)
T 2d8a_A          141 KSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVI  217 (348)
T ss_dssp             TTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEE
T ss_pred             CCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE
Confidence            999999999886 888999998 77889 999999999999999999999999987899999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCCh-HhHhc-CcEEEEee
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNF-PAIAL-GRNLKGTI  324 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~-~~~~~-~~~i~g~~  324 (332)
                      ++++   +++.+.+++++++.++|+|||++|....+..++++++++ |+++.+|... ...++++ ..++. ++++.|+.
T Consensus       218 ~~~~---~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~-~~~~~~~~~~~~~~~~~i~g~~  292 (348)
T 2d8a_A          218 NPFE---EDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYP-GKVTIDFNNLIIFKALTIYGIT  292 (348)
T ss_dssp             CTTT---SCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCS-SCCCCCHHHHTTTTTCEEEECC
T ss_pred             CCCC---cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCC-CCcccCchHHHHhCCcEEEEec
Confidence            9887   788888999988889999999999977899999999998 9999999876 3567777 66655 99999986


Q ss_pred             ccc
Q 043260          325 FGG  327 (332)
Q Consensus       325 ~~~  327 (332)
                      ...
T Consensus       293 ~~~  295 (348)
T 2d8a_A          293 GRH  295 (348)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.6e-53  Score=401.76  Aligned_cols=287  Identities=22%  Similarity=0.341  Sum_probs=253.9

Q ss_pred             ccceeeeEEEecCCCCeEEEEEecCC-CCCCeEEEEEeeeecCccccc-ccCCCC---CCCCCcccccceeEEEEEeCCC
Q 043260           11 KIYYAAAVVCWGEGEPWKVEEIQVEP-PKATEVRFKMLYASICHTDVL-SSKGFP---LPLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus        11 ~~~~~~a~~~~~~~~~l~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~-~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      .+++|||+++++++++++++++|.|+ |++|||||||++++||++|++ +.|.++   ...+|.++|||++|+|+++|++
T Consensus        12 ~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~   91 (359)
T 1h2b_A           12 GVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEG   91 (359)
T ss_dssp             -----CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTT
T ss_pred             ChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCC
Confidence            36789999999998669999999999 999999999999999999999 888654   3468999999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEc
Q 043260           86 VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKV  165 (332)
Q Consensus        86 v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~l  165 (332)
                      |++|++||||+..+..+|+.|++|++|++++|++....  |+..+|                  +|+||+.++++.++++
T Consensus        92 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~--G~~~~G------------------~~aey~~v~~~~~~~i  151 (359)
T 1h2b_A           92 VEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFP--GLNIDG------------------GFAEFMRTSHRSVIKL  151 (359)
T ss_dssp             CCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCB--TTTBCC------------------SSBSEEEECGGGEEEC
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCcccc--ccCCCC------------------cccceEEechHhEEEC
Confidence            99999999999999999999999999999999987654  654445                  4999999999999999


Q ss_pred             CCCCChhhhh---hcccchhhhHHHHHHh-hCCCCCCEEEEECCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHHc
Q 043260          166 DPSIDLSLAG---FLSCGYSSGFGAAWKE-FKVEKGSSVAVFGLGAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEAF  240 (332)
Q Consensus       166 P~~~~~~~aa---~l~~~~~ta~~al~~~-~~~~~g~~vlV~G~g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~l  240 (332)
                      |+++++++||   .+++++.|||+++.+. +++++|++|||+|+|++|++++|+|+.+ |+ +|++++++++|+++++++
T Consensus       152 P~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~~l  230 (359)
T 1h2b_A          152 PKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAERL  230 (359)
T ss_dssp             CTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHHHT
T ss_pred             CCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHh
Confidence            9999999999   7888889999998655 8999999999999999999999999999 99 899999999999999999


Q ss_pred             CCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChH--HHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-C
Q 043260          241 GMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVAS--LISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-G  317 (332)
Q Consensus       241 ga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~--~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~  317 (332)
                      |+++++++++   . +.+.++++++++++|+|||++|++.  .+..++++  ++ |+++.+|.... . ++++..++. +
T Consensus       231 Ga~~vi~~~~---~-~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~-G~~v~~g~~~~-~-~~~~~~~~~~~  301 (359)
T 1h2b_A          231 GADHVVDARR---D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RM-GRLIIVGYGGE-L-RFPTIRVISSE  301 (359)
T ss_dssp             TCSEEEETTS---C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EE-EEEEECCCSSC-C-CCCHHHHHHTT
T ss_pred             CCCEEEeccc---h-HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CC-CEEEEEeCCCC-C-CCCHHHHHhCC
Confidence            9999999887   5 7788888888779999999999976  78888887  77 99999998763 3 778777665 9


Q ss_pred             cEEEEeeccc
Q 043260          318 RNLKGTIFGG  327 (332)
Q Consensus       318 ~~i~g~~~~~  327 (332)
                      +++.|+..+.
T Consensus       302 ~~i~g~~~~~  311 (359)
T 1h2b_A          302 VSFEGSLVGN  311 (359)
T ss_dssp             CEEEECCSCC
T ss_pred             cEEEEecCCC
Confidence            9999987654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=2e-52  Score=392.06  Aligned_cols=285  Identities=23%  Similarity=0.355  Sum_probs=255.6

Q ss_pred             eeeEEEecCCCCeEEEEEecCC-CCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEP-PKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||+++++++. ++++|+|.|+ +++|||||||+++|||++|++ +.+..+ ..+|+++|||++|+|+++|++|+++++|
T Consensus         1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~-~~~P~i~G~E~~G~V~~vG~~V~~~~~G   78 (346)
T 4a2c_A            1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGA-HYYPITLGHEFSGYIDAVGSGVDDLHPG   78 (346)
T ss_dssp             CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCS-SSSSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred             CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCC-CCCCccccEEEEEEEEEECCCcccccCC
Confidence            89999999986 9999999998 579999999999999999998 777544 5789999999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      |||++.+...|+.|.+|+.|++++|++....  |...+|+                  |+||+.+|++.++++|++++++
T Consensus        79 drV~~~~~~~~g~c~~c~~g~~~~c~~~~~~--g~~~~G~------------------~aey~~v~~~~~~~iP~~l~~~  138 (346)
T 4a2c_A           79 DAVACVPLLPCFTCPECLKGFYSQCAKYDFI--GSRRDGG------------------FAEYIVVKRKNVFALPTDMPIE  138 (346)
T ss_dssp             CEEEECCEECCSCSHHHHTTCGGGCSSCEEB--TTTBCCS------------------SBSEEEEEGGGEEECCTTSCGG
T ss_pred             CeEEeeeccCCCCcccccCCccccCCCcccc--cCCCCcc------------------cccccccchheEEECCCCCCHH
Confidence            9999999999999999999999999998776  7666665                  9999999999999999999999


Q ss_pred             hhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP  252 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  252 (332)
                      +||+++ ++.+++++ .+..++++|++|||+|+|++|++++|+++.+|++.+++++++++|+++++++|+++++++++  
T Consensus       139 ~aa~l~-~~~~~~~~-~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~--  214 (346)
T 4a2c_A          139 DGAFIE-PITVGLHA-FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE--  214 (346)
T ss_dssp             GGGGHH-HHHHHHHH-HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTT--
T ss_pred             HHHhch-HHHHHHHH-HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCC--
Confidence            999876 55566654 47889999999999999999999999999999977889999999999999999999999988  


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC--CcccCChHhHhc-CcEEEEeeccc
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE--AKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~--~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                       .+..+.+++++++.++|+|+|++|++..++.++++++++ |+++.+|....  ....+++..++. +++|.|++.+.
T Consensus       215 -~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~  290 (346)
T 4a2c_A          215 -MSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNY  290 (346)
T ss_dssp             -SCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTT-CEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTC
T ss_pred             -CCHHHHHHhhcccCCcccccccccccchhhhhhheecCC-eEEEEEeccCCCccccccCHHHHhhceeEEEEEeccc
Confidence             788888888888889999999999988999999999998 99999998874  223344445555 99999997654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=1.1e-52  Score=396.57  Aligned_cols=292  Identities=23%  Similarity=0.290  Sum_probs=255.7

Q ss_pred             cccccceeeeEEEecCCCCeEEEEEecC--------CCCCCeEEEEEeeeecCccccc-ccCCC-C--CCCCCcccccce
Q 043260            8 SFLKIYYAAAVVCWGEGEPWKVEEIQVE--------PPKATEVRFKMLYASICHTDVL-SSKGF-P--LPLFPRVLGHEG   75 (332)
Q Consensus         8 ~~~~~~~~~a~~~~~~~~~l~~~~~~~p--------~~~~~eVlVkv~~~~i~~~D~~-~~g~~-~--~~~~p~v~G~e~   75 (332)
                      ..+++++|||+++++++. ++++++|.|        +|++|||||||++++||++|++ +.+.. +  ..++|.++|||+
T Consensus         2 ~~~~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~   80 (363)
T 3m6i_A            2 ASSASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHES   80 (363)
T ss_dssp             ---CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEE
T ss_pred             CCCCcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcce
Confidence            445789999999998876 999999999        9999999999999999999998 65321 1  246799999999


Q ss_pred             eEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCcccccccc-CCCCCcccccccceecccccCCceee
Q 043260           76 VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEY  154 (332)
Q Consensus        76 ~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~G~~a~~  154 (332)
                      +|+|+++|++|++|++||||++.+..+|+.|.+|++|+++.|++..+.  |.. .+                  |+|+||
T Consensus        81 ~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~--g~~~~~------------------G~~aey  140 (363)
T 3m6i_A           81 AGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFL--STPPVP------------------GLLRRY  140 (363)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEET--TSTTSC------------------CSCBSE
T ss_pred             EEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCcccc--CCCCCC------------------ccceeE
Confidence            999999999999999999999999999999999999999999998655  432 23                  469999


Q ss_pred             EEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 043260          155 MVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRK  234 (332)
Q Consensus       155 ~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~  234 (332)
                      +.+|++.++++|+ +++++||++. ++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+
T Consensus       141 ~~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~  217 (363)
T 3m6i_A          141 VNHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRL  217 (363)
T ss_dssp             EEEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHH
T ss_pred             EEEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence            9999999999999 9999999884 889999998 788999999999999999999999999999995699999999999


Q ss_pred             HHHHHcCCCeeeCCCC--CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChH
Q 043260          235 DKGEAFGMTDFINPDD--EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP  312 (332)
Q Consensus       235 ~~~~~lga~~v~~~~~--~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~  312 (332)
                      ++++++ ++.++++..  ...+++.+.+++++++.++|+|||++|++..+..++++++++ |+++.+|... ....+++.
T Consensus       218 ~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~  294 (363)
T 3m6i_A          218 KFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGVGK-NEIQIPFM  294 (363)
T ss_dssp             HHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECCCCC-SCCCCCHH
T ss_pred             HHHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEccCC-CCccccHH
Confidence            999999 766655431  123678889999998889999999999977899999999998 9999999876 44667877


Q ss_pred             hHhc-CcEEEEeecc
Q 043260          313 AIAL-GRNLKGTIFG  326 (332)
Q Consensus       313 ~~~~-~~~i~g~~~~  326 (332)
                      .++. ++++.|++.+
T Consensus       295 ~~~~~~~~i~g~~~~  309 (363)
T 3m6i_A          295 RASVREVDLQFQYRY  309 (363)
T ss_dssp             HHHHHTCEEEECCSC
T ss_pred             HHHhcCcEEEEccCC
Confidence            7777 9999998764

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=1.2e-52  Score=393.55  Aligned_cols=288  Identities=25%  Similarity=0.383  Sum_probs=255.1

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC--CCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL--PLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~--~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      |||+++++++++++++++|.|+|++|||||||++++||++|++ +.|.++.  ..+|.++|||++|+|+++|++|++|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   80 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV   80 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence            8999999999889999999999999999999999999999999 8776542  578999999999999999999999999


Q ss_pred             CCEEEeecccCCCCCcccccCCcccCCCC-cccc--ccccCCCCCcccccccceecccccCCceeeEEec-CCceEEcCC
Q 043260           92 GDIVIPTFIGECRECENCTSEMANLCLKY-PFTF--HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVD-ANYVVKVDP  167 (332)
Q Consensus        92 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~-~~~~--~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~-~~~v~~lP~  167 (332)
                      ||||++.+..+|+.|.+|++|++++|+.. .+..  .|+..+                  |+|+||+.++ ++.++++|+
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~------------------G~~aey~~v~~~~~~~~~p~  142 (345)
T 3jv7_A           81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSP------------------GSMAEYMIVDSARHLVPIGD  142 (345)
T ss_dssp             TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBC------------------CSSBSEEEESCGGGEEECTT
T ss_pred             CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCC------------------ceeeEEEEecchhceEeCCC
Confidence            99999999999999999999999999433 2210  133333                  4699999999 999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHH-hhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWK-EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~-~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                       +++++||.+++++.|||+++.+ ..++++|++|||+|+|++|++++|+|+.+|..+|++++++++|+++++++|+++++
T Consensus       143 -~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i  221 (345)
T 3jv7_A          143 -LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAV  221 (345)
T ss_dssp             -CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEE
T ss_pred             -CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEE
Confidence             9999999999999999999966 45899999999999999999999999999545999999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      +++    +++.+.++++++++++|+|||++|++..+..++++++++ |+++.+|.......+++. .++. ++++.|+..
T Consensus       222 ~~~----~~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~  295 (345)
T 3jv7_A          222 KSG----AGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAGAHAKVGF-FMIPFGASVVTPYW  295 (345)
T ss_dssp             ECS----TTHHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCTTCCEEEST-TTSCTTCEEECCCS
T ss_pred             cCC----CcHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCCCCCCcCH-HHHhCCCEEEEEec
Confidence            875    467888999998889999999999977999999999998 999999987753566775 4444 999999887


Q ss_pred             cc
Q 043260          326 GG  327 (332)
Q Consensus       326 ~~  327 (332)
                      +.
T Consensus       296 ~~  297 (345)
T 3jv7_A          296 GT  297 (345)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=2.3e-52  Score=393.37  Aligned_cols=289  Identities=25%  Similarity=0.346  Sum_probs=253.9

Q ss_pred             cceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCC-C--CCCCCcccccceeEEEEEeCCCCC
Q 043260           12 IYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGF-P--LPLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~-~--~~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      +|+|||+++++++. ++++++|.|+|+++||||||+++|||++|++ +.+.. +  ...+|.++|||++|+|+++|++|+
T Consensus         5 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~   83 (356)
T 1pl8_A            5 KPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK   83 (356)
T ss_dssp             CCCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred             ccCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCC
Confidence            57899999999865 9999999999999999999999999999998 76432 1  135799999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCcccccccc-CCCCCcccccccceecccccCCceeeEEecCCceEEcC
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD  166 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP  166 (332)
                      +|++||||++.+..+|+.|.+|++|++++|++..+.  |.. .+                  |+|+||+.++++.++++|
T Consensus        84 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~--g~~~~~------------------G~~aey~~v~~~~~~~iP  143 (356)
T 1pl8_A           84 HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFC--ATPPDD------------------GNLCRFYKHNAAFCYKLP  143 (356)
T ss_dssp             SCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEET--TBTTBC------------------CSCBSEEEEEGGGEEECC
T ss_pred             CCCCCCEEEEeccCCCCCChHHHCcCcccCCCcccc--CcCCCC------------------CccccEEEeehHHEEECc
Confidence            999999999999999999999999999999987544  432 23                  459999999999999999


Q ss_pred             CCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          167 PSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       167 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      +++++++||++ .++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++
T Consensus       144 ~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi  221 (356)
T 1pl8_A          144 DNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVL  221 (356)
T ss_dssp             TTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEE
T ss_pred             CCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE
Confidence            99999999976 4889999998 788999999999999999999999999999987899999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      +++..+..++.+.+++.++ .++|+|||++|.+..+..++++++++ |+++.+|... ....+++..++. ++++.|+..
T Consensus       222 ~~~~~~~~~~~~~i~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~  298 (356)
T 1pl8_A          222 QISKESPQEIARKVEGQLG-CKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGS-EMTTVPLLHAAIREVDIKGVFR  298 (356)
T ss_dssp             ECSSCCHHHHHHHHHHHHT-SCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCC-SCCCCCHHHHHHTTCEEEECCS
T ss_pred             cCcccccchHHHHHHHHhC-CCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEecCC-CCCccCHHHHHhcceEEEEecc
Confidence            8861001567778888887 68999999999977889999999998 9999999854 456778777666 999999865


Q ss_pred             c
Q 043260          326 G  326 (332)
Q Consensus       326 ~  326 (332)
                      .
T Consensus       299 ~  299 (356)
T 1pl8_A          299 Y  299 (356)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.7e-52  Score=394.06  Aligned_cols=297  Identities=27%  Similarity=0.341  Sum_probs=258.4

Q ss_pred             cceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCC---
Q 043260           12 IYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVK---   87 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~---   87 (332)
                      .-+|||++++++++.++++++|.|+|+++||||||++++||++|+. +.|.++...+|.++|||++|+|+++| +|+   
T Consensus        15 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V~~~~   93 (380)
T 1vj0_A           15 GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GEKRDL   93 (380)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SCCBCT
T ss_pred             hhheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Cccccc
Confidence            3579999999998559999999999999999999999999999999 88876545789999999999999999 999   


Q ss_pred             ---CCCCCCEEEeecccCCCCCcccc-cCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEe-cCCce
Q 043260           88 ---ELKEGDIVIPTFIGECRECENCT-SEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVV-DANYV  162 (332)
Q Consensus        88 ---~~~vGdrV~~~~~~~c~~c~~c~-~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v-~~~~v  162 (332)
                         +|++||||++.+..+|+.|++|+ +|++++|++....  |.......          .....|+|+||+.+ +++.+
T Consensus        94 ~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~--g~~~~~~~----------~~~~~G~~aey~~v~~~~~~  161 (380)
T 1vj0_A           94 NGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVY--GINRGCSE----------YPHLRGCYSSHIVLDPETDV  161 (380)
T ss_dssp             TSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEET--TTTCCSSS----------TTCCCSSSBSEEEECTTCCE
T ss_pred             cCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCccee--ccccccCC----------CCCCCccccceEEEcccceE
Confidence               99999999999999999999999 9999999987543  43100000          00113569999999 99999


Q ss_pred             EEcCCCCChh-hhhhcccchhhhHHHHHHhhC-CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc
Q 043260          163 VKVDPSIDLS-LAGFLSCGYSSGFGAAWKEFK-VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF  240 (332)
Q Consensus       163 ~~lP~~~~~~-~aa~l~~~~~ta~~al~~~~~-~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l  240 (332)
                      +++|++++++ +|++++ ++.|||+++ +.++ +++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++
T Consensus       162 ~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l  239 (380)
T 1vj0_A          162 LKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI  239 (380)
T ss_dssp             EEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             EECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc
Confidence            9999999999 777666 999999998 6678 99999999999999999999999999944999999999999999999


Q ss_pred             CCCeeeCCC---CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC-CCcccCChHh-Hh
Q 043260          241 GMTDFINPD---DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN-EAKVPLNFPA-IA  315 (332)
Q Consensus       241 ga~~v~~~~---~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~-~~~~~~~~~~-~~  315 (332)
                      |+++++++.   +   .++.+.+++++++.++|+|||++|++..+..++++++++ |+++.+|... ....++++.. ++
T Consensus       240 Ga~~vi~~~~~~~---~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~  315 (380)
T 1vj0_A          240 GADLTLNRRETSV---EERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLV  315 (380)
T ss_dssp             TCSEEEETTTSCH---HHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTT
T ss_pred             CCcEEEeccccCc---chHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCCCCeeEchHHHHH
Confidence            999999887   5   778888999988889999999999877899999999998 9999999876 4346788776 66


Q ss_pred             c-CcEEEEeeccc
Q 043260          316 L-GRNLKGTIFGG  327 (332)
Q Consensus       316 ~-~~~i~g~~~~~  327 (332)
                      . ++++.|++.+.
T Consensus       316 ~~~~~i~g~~~~~  328 (380)
T 1vj0_A          316 LKNATFKGIWVSD  328 (380)
T ss_dssp             TTTCEEEECCCCC
T ss_pred             hCCeEEEEeecCC
Confidence            5 99999987654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=1.3e-52  Score=393.99  Aligned_cols=290  Identities=24%  Similarity=0.393  Sum_probs=248.2

Q ss_pred             cceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           12 IYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      .|+|||+++++++++++++++|.|+|++|||||||++++||++|++ +.|.++...+|.++|||++|+|+++|++|++|+
T Consensus         2 ~m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~   81 (348)
T 3two_A            2 RVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFK   81 (348)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             ceEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCCC
Confidence            4789999999998889999999999999999999999999999999 888877678899999999999999999999999


Q ss_pred             CCCEEEeecc-cCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCC
Q 043260           91 EGDIVIPTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSI  169 (332)
Q Consensus        91 vGdrV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~  169 (332)
                      +||||++.+. .+|++|.+|++|++++|+ ....  |+..+..   ...+     ....|+|+||+.++++.++++|+++
T Consensus        82 vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~~--~~~~~~~---~~~~-----~~~~G~~aey~~v~~~~~~~iP~~~  150 (348)
T 3two_A           82 IGDVVGVGCFVNSCKACKPCKEHQEQFCT-KVVF--TYDCLDS---FHDN-----EPHMGGYSNNIVVDENYVISVDKNA  150 (348)
T ss_dssp             TTCEEEECSEEECCSCSHHHHTTCGGGCT-TCEE--SSSSEEG---GGTT-----EECCCSSBSEEEEEGGGCEECCTTS
T ss_pred             CCCEEEEeCCcCCCCCChhHhCCCcccCc-cccc--ccccccc---cccC-----CcCCccccceEEechhhEEECCCCC
Confidence            9999988654 799999999999999998 3322  3322200   0000     1123679999999999999999999


Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      ++++||.+++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++ .+
T Consensus       151 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~-~~  227 (348)
T 3two_A          151 PLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY-TD  227 (348)
T ss_dssp             CHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE-SS
T ss_pred             CHHHhhhhhhhHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec-CC
Confidence            9999999999999999998 45699999999999999999999999999999 999999999999999999999998 32


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC-CCcccCChHhHh-c-CcEEEEeecc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN-EAKVPLNFPAIA-L-GRNLKGTIFG  326 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~-~~~~~~~~~~~~-~-~~~i~g~~~~  326 (332)
                      .   +.    +    .. ++|+|||++|+...+..++++++++ |+++.+|... .....++...++ . ++++.|+..+
T Consensus       228 ~---~~----~----~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~  294 (348)
T 3two_A          228 P---KQ----C----KE-ELDFIISTIPTHYDLKDYLKLLTYN-GDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIG  294 (348)
T ss_dssp             G---GG----C----CS-CEEEEEECCCSCCCHHHHHTTEEEE-EEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCSC
T ss_pred             H---HH----H----hc-CCCEEEECCCcHHHHHHHHHHHhcC-CEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEecC
Confidence            2   21    1    11 8999999999976899999999998 9999999876 332236766666 5 9999999876


Q ss_pred             cc
Q 043260          327 GI  328 (332)
Q Consensus       327 ~~  328 (332)
                      .+
T Consensus       295 ~~  296 (348)
T 3two_A          295 GI  296 (348)
T ss_dssp             CH
T ss_pred             CH
Confidence            54

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.1e-51  Score=387.02  Aligned_cols=285  Identities=22%  Similarity=0.355  Sum_probs=246.4

Q ss_pred             cceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC--CCCCCcccccceeEEEEEeCCCCCC
Q 043260           12 IYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP--LPLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~--~~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      |.+|||+++++++++++++++|.|+|+++||||||+++|||++|++ +.|.++  ...+|.++|||++|+|+++|++ ++
T Consensus         1 m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~   79 (344)
T 2h6e_A            1 MVKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AK   79 (344)
T ss_dssp             CEEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CC
T ss_pred             CceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CC
Confidence            4689999999997669999999999999999999999999999999 888665  3468999999999999999999 99


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEec-CCceEEcCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVD-ANYVVKVDP  167 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~-~~~v~~lP~  167 (332)
                      |++||||+..+..+|++|.+|++|++++|++....  |...+|                  +|+||+.++ ++.++++ +
T Consensus        80 ~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~--G~~~~G------------------~~aey~~v~~~~~~~~i-~  138 (344)
T 2h6e_A           80 VKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIP--GQTTNG------------------GFSEYMLVKSSRWLVKL-N  138 (344)
T ss_dssp             CCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCB--TTTBCC------------------SSBSEEEESCGGGEEEE-S
T ss_pred             CCCCCEEEECCCCCCCCChhhhCCCcccCCCcccc--ccccCC------------------cceeeEEecCcccEEEe-C
Confidence            99999999888899999999999999999987543  554444                  599999999 9999999 9


Q ss_pred             CCChhhhhhcccchhhhHHHHHHh----hCCCCCCEEEEECCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHHcC
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKE----FKVEKGSSVAVFGLGAVGLGVMDRARIQ--GAAKIIGIDKNPCRKDKGEAFG  241 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~----~~~~~g~~vlV~G~g~vG~~~~~la~~~--G~~~Vi~~~~~~~~~~~~~~lg  241 (332)
                      ++++++||.+++++.|||+++.+.    .++ +|++|||+|+|++|++++|+|+.+  |+ +|++++++++|+++++++|
T Consensus       139 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~lG  216 (344)
T 2h6e_A          139 SLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALELG  216 (344)
T ss_dssp             SSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHHT
T ss_pred             CCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHhC
Confidence            999999999999999999998554    288 999999999999999999999999  99 8999999999999999999


Q ss_pred             CCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEE
Q 043260          242 MTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNL  320 (332)
Q Consensus       242 a~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i  320 (332)
                      +++++++++   .  .+.+.+++++.++|+|||++|++..+..++++++++ |+++.+|... ...+++...++. ++++
T Consensus       217 a~~vi~~~~---~--~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~-~~~~~~~~~~~~~~~~i  289 (344)
T 2h6e_A          217 ADYVSEMKD---A--ESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGMEG-KRVSLEAFDTAVWNKKL  289 (344)
T ss_dssp             CSEEECHHH---H--HHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCS-SCCCCCHHHHHHTTCEE
T ss_pred             CCEEecccc---c--hHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcC-CEEEEeCCCC-CCcccCHHHHhhCCcEE
Confidence            999997642   1  223455666668999999999977899999999998 9999999876 345777777665 9999


Q ss_pred             EEeeccc
Q 043260          321 KGTIFGG  327 (332)
Q Consensus       321 ~g~~~~~  327 (332)
                      .|+..+.
T Consensus       290 ~g~~~~~  296 (344)
T 2h6e_A          290 LGSNYGS  296 (344)
T ss_dssp             EECCSCC
T ss_pred             EEEecCC
Confidence            9987653

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=3e-52  Score=390.72  Aligned_cols=283  Identities=26%  Similarity=0.372  Sum_probs=255.0

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC---CCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP---LPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||+++++++++++++++|.|+|++|||||||+++|||++|++ +.|.++   ...+|.++|||++|+|+++|++|++|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ   80 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence            7999999988779999999999999999999999999999999 877654   356899999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||||++.+..+|+.|.+|++|++++|++....  |+..+|                  +|+||+.++++.++++|++++
T Consensus        81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~--g~~~~G------------------~~aey~~v~~~~~~~iP~~~~  140 (343)
T 2dq4_A           81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQIL--GVDRDG------------------GFAEYVVVPAENAWVNPKDLP  140 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEEB--TTTBCC------------------SSBSEEEEEGGGEEEECTTSC
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCccee--cCCCCC------------------cceeEEEEchHHeEECCCCCC
Confidence            999999999999999999999999999987654  554444                  599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      +++||++. ++.|||+++.+.+++ +|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++ +++++++.+
T Consensus       141 ~~~aa~~~-~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~  217 (343)
T 2dq4_A          141 FEVAAILE-PFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLE  217 (343)
T ss_dssp             HHHHTTHH-HHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTT
T ss_pred             HHHHHhhh-HHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCc
Confidence            99999884 788999998547889 999999999999999999999999987899999999999999999 999999887


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCCh-HhHhc-CcEEEEeecc
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNF-PAIAL-GRNLKGTIFG  326 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~-~~~~~-~~~i~g~~~~  326 (332)
                         +++.+.+++++ +.++|+|||++|+...+..++++++++ |+++.+|... ...++++ ..++. ++++.|+...
T Consensus       218 ---~~~~~~~~~~~-~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~-~~~~~~~~~~~~~~~~~i~g~~~~  289 (343)
T 2dq4_A          218 ---EDLLEVVRRVT-GSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPS-DPIRFDLAGELVMRGITAFGIAGR  289 (343)
T ss_dssp             ---SCHHHHHHHHH-SSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCS-SCEEECHHHHTGGGTCEEEECCSC
T ss_pred             ---cCHHHHHHHhc-CCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC-CCceeCcHHHHHhCceEEEEeecC
Confidence               78888888888 669999999999977899999999998 9999999865 4567787 66655 9999998654

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.1e-51  Score=388.16  Aligned_cols=287  Identities=25%  Similarity=0.403  Sum_probs=250.2

Q ss_pred             cceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccC-CCC--CCCCCcccccceeEEEEEeCCCCC
Q 043260           12 IYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSK-GFP--LPLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g-~~~--~~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      .++|||+++++++. ++++++|.|+|+++||||||++++||++|++ +.+ ..+  ...+|.++|||++|+|+++|++|+
T Consensus         2 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   80 (352)
T 1e3j_A            2 ASDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK   80 (352)
T ss_dssp             --CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCC
T ss_pred             cccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCC
Confidence            46799999999875 9999999999999999999999999999998 663 322  135799999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCcccccccc-CCCCCcccccccceecccccCCceeeEEecCCceEEcC
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD  166 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP  166 (332)
                      +|++||||++.+..+|+.|++|++|++++|++..+.  |.. .+                  |+|+||+.++++.++++|
T Consensus        81 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~--g~~~~~------------------G~~aey~~v~~~~~~~iP  140 (352)
T 1e3j_A           81 HLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC--ATPPDD------------------GNLARYYVHAADFCHKLP  140 (352)
T ss_dssp             SCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEET--TBTTBC------------------CSCBSEEEEEGGGEEECC
T ss_pred             CCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCccc--CcCCCC------------------ccceeEEEeChHHeEECc
Confidence            999999999999999999999999999999987544  432 23                  469999999999999999


Q ss_pred             CCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          167 PSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       167 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      +++++++||++ .++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++
T Consensus       141 ~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~  217 (352)
T 1e3j_A          141 DNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTL  217 (352)
T ss_dssp             TTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEE
T ss_pred             CCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEE
Confidence            99999999976 4888999998 78899999999999999999999999999999 799999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHhcC---CCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEE
Q 043260          247 NPDDEPNKSISELVKEMTH---GTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKG  322 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~---~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g  322 (332)
                      ++++  ..++.+.+.+.++   +.++|+|||++|+...+..++++++++ |+++.+|... ...++++..++. ++++.|
T Consensus       218 ~~~~--~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g  293 (352)
T 1e3j_A          218 VVDP--AKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGS-QMVTVPLVNACAREIDIKS  293 (352)
T ss_dssp             ECCT--TTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCS-SCCCCCHHHHHTTTCEEEE
T ss_pred             cCcc--cccHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC-CCccccHHHHHhcCcEEEE
Confidence            8762  1455666777665   568999999999977889999999998 9999999855 456677777766 999999


Q ss_pred             eecc
Q 043260          323 TIFG  326 (332)
Q Consensus       323 ~~~~  326 (332)
                      ++..
T Consensus       294 ~~~~  297 (352)
T 1e3j_A          294 VFRY  297 (352)
T ss_dssp             CCSC
T ss_pred             eccc
Confidence            8654

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=5.5e-52  Score=390.20  Aligned_cols=287  Identities=22%  Similarity=0.288  Sum_probs=254.7

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-c-cCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-S-SKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~-~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||++++++++ ++++++|.|+|++|||||||++++||++|++ + .|.++ ..+|.++|||++|+|+++|++|++|++|
T Consensus         1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~vG   78 (352)
T 3fpc_A            1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG-ERHNMILGHEAVGEVVEVGSEVKDFKPG   78 (352)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTC-CCSSEECCCEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCC-CCCCcccCCcceEEEEEECCCCCcCCCC
Confidence            89999999987 9999999999999999999999999999998 5 66554 4689999999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCC--ceEEcCCCC
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN--YVVKVDPSI  169 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~--~v~~lP~~~  169 (332)
                      |||++.+..+|+.|.+|++|++++|....... .|...+                  |+|+||+.+++.  .++++|+++
T Consensus        79 drV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~------------------G~~aey~~v~~~~~~~~~iP~~~  140 (352)
T 3fpc_A           79 DRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKD------------------GVFGEFFHVNDADMNLAHLPKEI  140 (352)
T ss_dssp             CEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBC------------------CSSBSCEEESSHHHHCEECCTTS
T ss_pred             CEEEEccccCCCCchhhcCCCcCCccccccccccccCCC------------------CcccceEEeccccCeEEECCCCC
Confidence            99999999999999999999999997654211 122233                  469999999975  999999999


Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      ++++||++++++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++++++
T Consensus       141 ~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~  219 (352)
T 3fpc_A          141 PLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYK  219 (352)
T ss_dssp             CHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGG
T ss_pred             CHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCC
Confidence            9999999999999999998 788999999999999999999999999999987899999999999999999999999998


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhH---hcCcEEEEeec
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAI---ALGRNLKGTIF  325 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~---~~~~~i~g~~~  325 (332)
                      +   .++.+.++++++++++|+|||++|++..+..++++++++ |+++.+|.... ..++++...+   ++++++.|++.
T Consensus       220 ~---~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~  295 (352)
T 3fpc_A          220 N---GDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLC  295 (352)
T ss_dssp             G---SCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCC
T ss_pred             C---cCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEecccCCCCceecchhHhhhhccccEEEEeec
Confidence            7   889999999999989999999999977899999999998 99999998764 4444443332   23889999876


Q ss_pred             c
Q 043260          326 G  326 (332)
Q Consensus       326 ~  326 (332)
                      .
T Consensus       296 ~  296 (352)
T 3fpc_A          296 P  296 (352)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=1.7e-51  Score=385.06  Aligned_cols=284  Identities=27%  Similarity=0.470  Sum_probs=254.5

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||+++++++.+++++++|.|+|+++||||||+++|||++|++ +.|.++. ..+|.++|||++|+|+++|++|++|++|
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG   80 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence            7999999998669999999999999999999999999999999 8876553 4689999999999999999999999999


Q ss_pred             CEEEeeccc-CCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           93 DIVIPTFIG-ECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        93 drV~~~~~~-~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      |||++.+.. .|+.|++|++|++++|++....  |+..+|                  +|+||+.++++.++++|+++++
T Consensus        81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~--g~~~~G------------------~~aey~~v~~~~~~~~P~~~~~  140 (339)
T 1rjw_A           81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKNA--GYSVDG------------------GYAEYCRAAADYVVKIPDNLSF  140 (339)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEEB--TTTBCC------------------SSBSEEEEEGGGCEECCTTSCH
T ss_pred             CEEEEecCCCCCCCCchhhCcCcccCCCccee--ecCCCC------------------cceeeEEechHHEEECCCCCCH
Confidence            999987754 5999999999999999987654  554555                  4999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      ++||++++++.|||+++. ..++++|++|||+|+|++|++++|+++.+|+ +|++++++++++++++++|++.++++.+ 
T Consensus       141 ~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~~-  217 (339)
T 1rjw_A          141 EEAAPIFCAGVTTYKALK-VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLK-  217 (339)
T ss_dssp             HHHGGGGTHHHHHHHHHH-HHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTTT-
T ss_pred             HHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCCC-
Confidence            999999999999999985 4589999999999998899999999999999 9999999999999999999999999876 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeeccc
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                        .++.+.+.+.+ + ++|+|||++|.+..+..++++++++ |+++.+|.... ..++++..++. ++++.|+..+.
T Consensus       218 --~~~~~~~~~~~-~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~  288 (339)
T 1rjw_A          218 --EDAAKFMKEKV-G-GVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPE-EMPIPIFDTVLNGIKIIGSIVGT  288 (339)
T ss_dssp             --SCHHHHHHHHH-S-SEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSS-EEEEEHHHHHHTTCEEEECCSCC
T ss_pred             --ccHHHHHHHHh-C-CCCEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCC-CCccCHHHHHhCCcEEEEeccCC
Confidence              67888888877 3 8999999999977899999999998 99999998763 46677776665 99999987654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-51  Score=385.95  Aligned_cols=291  Identities=24%  Similarity=0.381  Sum_probs=258.6

Q ss_pred             ccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCC
Q 043260           11 KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        11 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      +|.+|||+++++++.+++++++|.|+|+++||||||++++||++|++ +.|.++. ..+|.++|||++|+|+++|++|++
T Consensus         2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (347)
T 2hcy_A            2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG   81 (347)
T ss_dssp             CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence            57889999999998669999999999999999999999999999999 8776552 468999999999999999999999


Q ss_pred             CCCCCEEEeeccc-CCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           89 LKEGDIVIPTFIG-ECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        89 ~~vGdrV~~~~~~-~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      |++||||++.+.. +|+.|++|++|++++|++....  |+..+|                  +|+||+.++++.++++|+
T Consensus        82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~--g~~~~G------------------~~aey~~v~~~~~~~iP~  141 (347)
T 2hcy_A           82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLS--GYTHDG------------------SFQQYATADAVQAAHIPQ  141 (347)
T ss_dssp             CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEB--TTTBCC------------------SSBSEEEEETTTSEEECT
T ss_pred             CcCCCEEEEecCCCCCCCChhhhCCCcccCcccccc--ccCCCC------------------cceeEEEeccccEEECCC
Confidence            9999999987754 5999999999999999987654  554445                  499999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      ++++++||++++++.|||+++. ..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++.++
T Consensus       142 ~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~~~  219 (347)
T 2hcy_A          142 GTDLAQVAPILCAGITVYKALK-SANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEVFI  219 (347)
T ss_dssp             TCCHHHHGGGGTHHHHHHHHHH-TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCEEE
T ss_pred             CCCHHHHHHHhhhHHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCceEE
Confidence            9999999999999999999984 458999999999998 9999999999999999 999999999999999999999998


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      +..+  .+++.+.+.+.+++ ++|+|||++|....+..++++++++ |+++.+|.......++++..++. ++++.|+..
T Consensus       220 d~~~--~~~~~~~~~~~~~~-~~D~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~  295 (347)
T 2hcy_A          220 DFTK--EKDIVGAVLKATDG-GAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYV  295 (347)
T ss_dssp             ETTT--CSCHHHHHHHHHTS-CEEEEEECSSCHHHHHHHTTSEEEE-EEEEECCCCTTCEEEEEHHHHHHTTCEEEECCC
T ss_pred             ecCc--cHhHHHHHHHHhCC-CCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEeCCCCCCCCCCHHHHhhCCcEEEEccC
Confidence            8762  26778888888877 8999999999977899999999998 99999998764446777777666 999999876


Q ss_pred             cc
Q 043260          326 GG  327 (332)
Q Consensus       326 ~~  327 (332)
                      +.
T Consensus       296 ~~  297 (347)
T 2hcy_A          296 GN  297 (347)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=2.1e-51  Score=384.91  Aligned_cols=286  Identities=24%  Similarity=0.415  Sum_probs=256.1

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||+++++++.+  +++++++.|+|+++||||||++++||++|++ +.|.++. ..+|.++|||++|+|+++|++|++|+
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA   80 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence            799999998864  8899999999999999999999999999999 8776543 46899999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||||++.|..+|+.|.+|++|++++|++....  |+..+|                  +|+||+.++++.++++|++++
T Consensus        81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~--G~~~~G------------------~~aey~~v~~~~~~~~P~~~~  140 (343)
T 2eih_A           81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQIL--GEHRHG------------------TYAEYVVLPEANLAPKPKNLS  140 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEET--TTSSCC------------------SSBSEEEEEGGGEEECCTTSC
T ss_pred             CCCEEEECCCCCcccchhhccCccccccccccc--CcCCCc------------------cceeEEEeChHHeEECCCCCC
Confidence            999999999999999999999999999987654  554444                  599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++.++++.
T Consensus       141 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d~~  219 (343)
T 2eih_A          141 FEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNYT  219 (343)
T ss_dssp             HHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETT
T ss_pred             HHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEcCC
Confidence            99999999999999999966679999999999998 9999999999999999 999999999999999999999999887


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      +   .++.+.+.+.+++.++|+|||++|. +.+..++++++++ |+++.+|........+++..++. ++++.|+..+
T Consensus       220 ~---~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~  292 (343)
T 2eih_A          220 H---PDWPKEVRRLTGGKGADKVVDHTGA-LYFEGVIKATANG-GRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMA  292 (343)
T ss_dssp             S---TTHHHHHHHHTTTTCEEEEEESSCS-SSHHHHHHHEEEE-EEEEESSCCCSCCCCCCTTHHHHTTCEEEECCSC
T ss_pred             c---ccHHHHHHHHhCCCCceEEEECCCH-HHHHHHHHhhccC-CEEEEEecCCCCcCccCHHHHHhCCcEEEEecCc
Confidence            7   6788888888877789999999994 6889999999998 99999998764333566666655 9999998654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=5.4e-51  Score=390.32  Aligned_cols=288  Identities=27%  Similarity=0.393  Sum_probs=252.4

Q ss_pred             eeeeEEEecCCCCeEEEEEecCC-CCCCeEEEEEeeeecCccccc-ccCCCC-------CCCCCcccccceeEEEEEeCC
Q 043260           14 YAAAVVCWGEGEPWKVEEIQVEP-PKATEVRFKMLYASICHTDVL-SSKGFP-------LPLFPRVLGHEGVGMVESIGD   84 (332)
Q Consensus        14 ~~~a~~~~~~~~~l~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~-~~g~~~-------~~~~p~v~G~e~~G~Vv~vG~   84 (332)
                      +|+++++..++ .++++++|.|+ |++|||||||.+++||++|++ +.+...       ...+|.++|||++|+|+++|+
T Consensus        30 ~m~a~~~~~~~-~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG~  108 (404)
T 3ip1_A           30 TWLGSKVWRYP-EVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGP  108 (404)
T ss_dssp             BSCGGGTEEEE-EEEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEECT
T ss_pred             hcceEEEEeCC-ceEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEECC
Confidence            34444444433 38899999999 999999999999999999999 765321       246899999999999999999


Q ss_pred             CC------CCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEec
Q 043260           85 EV------KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVD  158 (332)
Q Consensus        85 ~v------~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~  158 (332)
                      +|      ++|++||||++.+..+|+.|.+|++|++++|++....  |+..+|+                  |+||+.++
T Consensus       109 ~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~--g~~~~G~------------------~aey~~v~  168 (404)
T 3ip1_A          109 EAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNEL--GFNVDGA------------------FAEYVKVD  168 (404)
T ss_dssp             TCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEEB--TTTBCCS------------------SBSEEEEE
T ss_pred             CccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCcccccc--CCCCCCC------------------CcceEEec
Confidence            99      8899999999999999999999999999999998765  6665554                  99999999


Q ss_pred             CCceEEcCCCCC------hhhhhhcccchhhhHHHHHHh-hCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          159 ANYVVKVDPSID------LSLAGFLSCGYSSGFGAAWKE-FKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       159 ~~~v~~lP~~~~------~~~aa~l~~~~~ta~~al~~~-~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ++.++++|++++      +.++|+++.++.|||+++... +++++|++|||+|+|++|++++|+|+.+|+++|+++++++
T Consensus       169 ~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  248 (404)
T 3ip1_A          169 AKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSE  248 (404)
T ss_dssp             GGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCH
T ss_pred             hHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            999999999886      456888888999999998655 4899999999999999999999999999998899999999


Q ss_pred             chHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCCh-HHHHHHHHHh----ccCCcEEEEEcCCCCCc
Q 043260          232 CRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVA-SLISEALEAT----KLGKGKVMAIGAANEAK  306 (332)
Q Consensus       232 ~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~-~~~~~~~~~l----~~~~G~~v~~G~~~~~~  306 (332)
                      +|+++++++|+++++++.+   .++.+.++++++++++|+|||++|++ ..+..+++++    +++ |+++.+|... ..
T Consensus       249 ~~~~~~~~lGa~~vi~~~~---~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~-G~iv~~G~~~-~~  323 (404)
T 3ip1_A          249 VRRNLAKELGADHVIDPTK---ENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGIN-ATVAIVARAD-AK  323 (404)
T ss_dssp             HHHHHHHHHTCSEEECTTT---SCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCC-CEEEECSCCC-SC
T ss_pred             HHHHHHHHcCCCEEEcCCC---CCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCC-cEEEEeCCCC-CC
Confidence            9999999999999999988   88999999999999999999999996 3667778888    998 9999999887 45


Q ss_pred             ccCChHhHhc-CcEEEEeeccc
Q 043260          307 VPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       307 ~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      .+++...++. ++++.|+....
T Consensus       324 ~~~~~~~~~~~~~~i~g~~~~~  345 (404)
T 3ip1_A          324 IPLTGEVFQVRRAQIVGSQGHS  345 (404)
T ss_dssp             EEECHHHHHHTTCEEEECCCCC
T ss_pred             CcccHHHHhccceEEEEecCCC
Confidence            6888888777 99999997543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.5e-51  Score=388.18  Aligned_cols=297  Identities=21%  Similarity=0.400  Sum_probs=244.3

Q ss_pred             ecccccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCC
Q 043260            7 ISFLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus         7 ~~~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      +.....|+||++++.++++.++++++|.|+|+++||||||++++||++|+. +.|.++...+|.++|||++|+|+++|++
T Consensus        15 ~~~~~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~   94 (369)
T 1uuf_A           15 LYKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQ   94 (369)
T ss_dssp             --------CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTT
T ss_pred             hhHhcCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCC
Confidence            344567999999998887779999999999999999999999999999999 8876655568999999999999999999


Q ss_pred             CCCCCCCCEEEeecc-cCCCCCcccccCCcccCCCCcccccccc-CCCCCcccccccceecccccCCceeeEEecCCceE
Q 043260           86 VKELKEGDIVIPTFI-GECRECENCTSEMANLCLKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVV  163 (332)
Q Consensus        86 v~~~~vGdrV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~  163 (332)
                      |++|++||||++.|. .+|+.|.+|++|++++|++......+.. ..|             ....|+|+||+.+|++.++
T Consensus        95 V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g-------------~~~~G~~aeyv~v~~~~~~  161 (369)
T 1uuf_A           95 VEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEP-------------GHTLGGYSQQIVVHERYVL  161 (369)
T ss_dssp             CCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTT-------------SBCCCSSBSEEEEEGGGCE
T ss_pred             CCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCC-------------CCCCCcccceEEEcchhEE
Confidence            999999999998776 5699999999999999998631111110 001             0112569999999999999


Q ss_pred             EcCCC-CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC
Q 043260          164 KVDPS-IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       164 ~lP~~-~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      ++|++ +++++||++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+
T Consensus       162 ~~P~~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa  239 (369)
T 1uuf_A          162 RIRHPQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGA  239 (369)
T ss_dssp             ECCSCGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTC
T ss_pred             ECCCCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC
Confidence            99999 9999999999999999999854 689999999999999999999999999999 79999999999999999999


Q ss_pred             CeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEE
Q 043260          243 TDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLK  321 (332)
Q Consensus       243 ~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~  321 (332)
                      +.++++.+   .++.   .++.  .++|+|||++|.+..+..++++++++ |+++.+|........++...++. ++++.
T Consensus       240 ~~vi~~~~---~~~~---~~~~--~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~  310 (369)
T 1uuf_A          240 DEVVNSRN---ADEM---AAHL--KSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIA  310 (369)
T ss_dssp             SEEEETTC---HHHH---HTTT--TCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC-------CHHHHHTTTCEEE
T ss_pred             cEEecccc---HHHH---HHhh--cCCCEEEECCCCHHHHHHHHHHhccC-CEEEEeccCCCCccccCHHHHHhCCcEEE
Confidence            99998876   4433   3333  37999999999866789999999998 99999998763222677777666 99999


Q ss_pred             Eeeccc
Q 043260          322 GTIFGG  327 (332)
Q Consensus       322 g~~~~~  327 (332)
                      |+..+.
T Consensus       311 g~~~~~  316 (369)
T 1uuf_A          311 GSMIGG  316 (369)
T ss_dssp             ECCSCC
T ss_pred             EeecCC
Confidence            987654

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=1.1e-50  Score=380.50  Aligned_cols=287  Identities=29%  Similarity=0.453  Sum_probs=259.7

Q ss_pred             eeeEEEecC-CCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGE-GEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~-~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||+++... ...+++++.|.|+|++|||||||.++|||++|++ +.|.++ .++|.++|||++|+|+++|++|++|++|
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~-~~~p~i~GhE~aG~V~~vG~~V~~~~~G   79 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFG-NKAGTVLGHEGIGIVKEIGADVSSLQVG   79 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTC-CCTTCBCCSEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCC-CCCCcccceeEEEEEEEECceeeecccC
Confidence            899998644 3459999999999999999999999999999999 888765 4789999999999999999999999999


Q ss_pred             CEEEeecc-cCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           93 DIVIPTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        93 drV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      |||++.+. ..|+.|.+|..+.++.|.+....  +...+|+                  |+||+.++++.++++|+++++
T Consensus        80 drV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~G~------------------~ae~~~~~~~~~~~iP~~~~~  139 (348)
T 4eez_A           80 DRVSVAWFFEGCGHCEYCVSGNETFCREVKNA--GYSVDGG------------------MAEEAIVVADYAVKVPDGLDP  139 (348)
T ss_dssp             CEEEEESEEECCSSSHHHHTTCGGGCTTCEEB--TTTBCCS------------------SBSEEEEEGGGSCBCCTTSCH
T ss_pred             CeEeecccccccCccccccCCccccccccccc--ccccCCc------------------ceeeccccccceeecCCCCCH
Confidence            99987766 45688999999999999988766  5555554                  999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      ++||++++++.|||+++ +..++++|++|||+|+|++|.+++|+++.++..+||+++++++|+++++++|+++++|+++ 
T Consensus       140 ~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~-  217 (348)
T 4eez_A          140 IEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGD-  217 (348)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-C-
T ss_pred             HHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCC-
Confidence            99999999999999987 6789999999999999999999999999886559999999999999999999999999998 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecccc
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGGI  328 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~~  328 (332)
                        .++.+.+++++++.++|++++++++..++..++++++++ |+++.+|.+. ...+++...++. +++|.|++.+++
T Consensus       218 --~~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~i~gs~~~~~  291 (348)
T 4eez_A          218 --VNPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPM-GKMVAVAVPN-TEMTLSVPTVVFDGVEVAGSLVGTR  291 (348)
T ss_dssp             --CCHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEE-EEEEECCCCS-CEEEECHHHHHHSCCEEEECCSCCH
T ss_pred             --CCHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCC-ceEEEEeccC-CCCccCHHHHHhCCeEEEEEecCCH
Confidence              889999999999999999999999998999999999998 9999999877 556777777777 999999988764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=2.7e-51  Score=386.72  Aligned_cols=286  Identities=20%  Similarity=0.318  Sum_probs=247.4

Q ss_pred             ccceeeeEEEecCCCCeEEEE--EecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCC
Q 043260           11 KIYYAAAVVCWGEGEPWKVEE--IQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        11 ~~~~~~a~~~~~~~~~l~~~~--~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      +|++|||+++++++.++++++  +|.|+|+++||||||++++||++|++ +.|.++...+|.++|||++|+|+++|++|+
T Consensus         3 ~p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~v~   82 (360)
T 1piw_A            3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSN   82 (360)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCCCC
Confidence            467899999999876699999  99999999999999999999999999 888765567899999999999999999999


Q ss_pred             -CCCCCCEEEee-cccCCCCCcccccCCcccCCCC--cccc---ccccCCCCCcccccccceecccccCCceeeEEecCC
Q 043260           88 -ELKEGDIVIPT-FIGECRECENCTSEMANLCLKY--PFTF---HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN  160 (332)
Q Consensus        88 -~~~vGdrV~~~-~~~~c~~c~~c~~g~~~~c~~~--~~~~---~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~  160 (332)
                       +|++||||++. +..+|+.|.+|++|++++|++.  .+..   .|...                  .|+|+||+.++++
T Consensus        83 ~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~------------------~G~~aey~~v~~~  144 (360)
T 1piw_A           83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVS------------------QGGYANYVRVHEH  144 (360)
T ss_dssp             SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBC------------------CCSSBSEEEEEGG
T ss_pred             CCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccC------------------CCcceeEEEEchh
Confidence             99999999654 4578999999999999999876  1110   02222                  2469999999999


Q ss_pred             ceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc
Q 043260          161 YVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF  240 (332)
Q Consensus       161 ~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l  240 (332)
                      .++++|+++++++||++++++.|||+++.+ +++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++
T Consensus       145 ~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l  222 (360)
T 1piw_A          145 FVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM  222 (360)
T ss_dssp             GEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH
T ss_pred             heEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc
Confidence            999999999999999999999999999854 899999999999999999999999999999 899999999999999999


Q ss_pred             CCCeeeCCCCCCCc-hHHHHHHHhcCCCCccEEEEcCCC--hHHHHHHHHHhccCCcEEEEEcCCCCCcc-cCChHhHhc
Q 043260          241 GMTDFINPDDEPNK-SISELVKEMTHGTGVDYGFECTGV--ASLISEALEATKLGKGKVMAIGAANEAKV-PLNFPAIAL  316 (332)
Q Consensus       241 ga~~v~~~~~~~~~-~~~~~~~~~~~~~g~d~vid~~g~--~~~~~~~~~~l~~~~G~~v~~G~~~~~~~-~~~~~~~~~  316 (332)
                      |+++++++.+   . ++.+.+.     .++|+|||++|+  +..+..++++++++ |+++.+|....  . .+++..++.
T Consensus       223 Ga~~v~~~~~---~~~~~~~~~-----~~~D~vid~~g~~~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~  291 (360)
T 1piw_A          223 GADHYIATLE---EGDWGEKYF-----DTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQ--HEMLSLKPYGL  291 (360)
T ss_dssp             TCSEEEEGGG---TSCHHHHSC-----SCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCS--SCCEEECGGGC
T ss_pred             CCCEEEcCcC---chHHHHHhh-----cCCCEEEECCCCCcHHHHHHHHHHhcCC-CEEEEecCCCC--ccccCHHHHHh
Confidence            9999998875   4 5544332     379999999998  66888999999998 99999998763  3 555555555


Q ss_pred             -CcEEEEeeccc
Q 043260          317 -GRNLKGTIFGG  327 (332)
Q Consensus       317 -~~~i~g~~~~~  327 (332)
                       ++++.|+..+.
T Consensus       292 ~~~~i~g~~~~~  303 (360)
T 1piw_A          292 KAVSISYSALGS  303 (360)
T ss_dssp             BSCEEEECCCCC
T ss_pred             CCeEEEEEecCC
Confidence             99999987654

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=2.2e-50  Score=380.08  Aligned_cols=292  Identities=22%  Similarity=0.394  Sum_probs=247.8

Q ss_pred             ccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCC
Q 043260           11 KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKEL   89 (332)
Q Consensus        11 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~   89 (332)
                      .+|+|++++++++.+.++++++|.|+|++|||||||+++|||++|++ +.|.++...+|.++|||++|+|+++|++|++|
T Consensus         6 ~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~~~   85 (357)
T 2cf5_A            6 AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKF   85 (357)
T ss_dssp             CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECSSCCSC
T ss_pred             CcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCC
Confidence            46889999999887779999999999999999999999999999999 88766556789999999999999999999999


Q ss_pred             CCCCEEEeecc-cCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCC
Q 043260           90 KEGDIVIPTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        90 ~vGdrV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      ++||||++.+. .+|+.|.+|++|++++|++......+....|.             ...|+|+||+.+|++.++++|++
T Consensus        86 ~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~-------------~~~G~~aey~~v~~~~~~~~P~~  152 (357)
T 2cf5_A           86 TVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQ-------------PTQGGFAKATVVHQKFVVKIPEG  152 (357)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSC-------------BCCCSSBSCEEEEGGGEEECCSS
T ss_pred             CCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCC-------------CCCCccccEEEechhhEEECcCC
Confidence            99999987654 68999999999999999765432222111111             12367999999999999999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCC-CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCeee
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVE-KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTDFI  246 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~-~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~v~  246 (332)
                      +++++||++++++.|||+++. ..+++ +|++|||+|+|++|++++|+++.+|+ +|++++++++|++.++ ++|+++++
T Consensus       153 ls~~~aa~l~~~~~ta~~~l~-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~vi  230 (357)
T 2cf5_A          153 MAVEQAAPLLCAGVTVYSPLS-HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGADDYV  230 (357)
T ss_dssp             CCHHHHTGGGTHHHHHHHHHH-HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCSCEE
T ss_pred             CCHHHhhhhhhhHHHHHHHHH-hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCceee
Confidence            999999999999999999884 56888 99999999999999999999999999 9999999999999888 99999999


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      ++.+   .   +.+.+.++  ++|+|||++|.+..++.++++++++ |+++.+|........+++. ++. ++++.|++.
T Consensus       231 ~~~~---~---~~~~~~~~--g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g~~~  300 (357)
T 2cf5_A          231 IGSD---Q---AKMSELAD--SLDYVIDTVPVHHALEPYLSLLKLD-GKLILMGVINNPLQFLTPL-LMLGRKVITGSFI  300 (357)
T ss_dssp             ETTC---H---HHHHHSTT--TEEEEEECCCSCCCSHHHHTTEEEE-EEEEECSCCSSCCCCCHHH-HHHHTCEEEECCS
T ss_pred             cccc---H---HHHHHhcC--CCCEEEECCCChHHHHHHHHHhccC-CEEEEeCCCCCCccccCHH-HHhCccEEEEEcc
Confidence            8865   3   34555553  7999999999866789999999998 9999999876322225555 555 999999876


Q ss_pred             cc
Q 043260          326 GG  327 (332)
Q Consensus       326 ~~  327 (332)
                      +.
T Consensus       301 ~~  302 (357)
T 2cf5_A          301 GS  302 (357)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=4.1e-50  Score=379.05  Aligned_cols=292  Identities=23%  Similarity=0.278  Sum_probs=253.5

Q ss_pred             eeecccccceeeeEEEecCC-CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEE
Q 043260            5 FHISFLKIYYAAAVVCWGEG-EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVES   81 (332)
Q Consensus         5 ~~~~~~~~~~~~a~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~   81 (332)
                      +++...++.+|||+++++++ +.++++++|.|+|++|||||||+++|||++|+. +.|.++. ..+|.++|||++|+|++
T Consensus        18 ~~~~~~m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~   97 (363)
T 3uog_A           18 LYFQSMMSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEA   97 (363)
T ss_dssp             -----CCCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEE
T ss_pred             eEEeccCchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEE
Confidence            45556677889999999764 359999999999999999999999999999999 8887653 67899999999999999


Q ss_pred             eCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCcccc--ccccCCCCCcccccccceecccccCCceeeEEecC
Q 043260           82 IGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF--HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDA  159 (332)
Q Consensus        82 vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~--~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~  159 (332)
                      +|++|++|++||||++.+..      .|+.|. +.|.+.....  .|...+|                  +|+||+.+++
T Consensus        98 vG~~v~~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~~~G------------------~~aey~~v~~  152 (363)
T 3uog_A           98 VGKSVTRFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGAHPG------------------VLSEYVVLPE  152 (363)
T ss_dssp             ECTTCCSCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTTSCC------------------CCBSEEEEEG
T ss_pred             ECCCCCCCCCCCEEEEeccc------cccccc-cccccccccccccCcCCCC------------------cceeEEEech
Confidence            99999999999999987654      677888 8998532110  2444444                  5999999999


Q ss_pred             CceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH
Q 043260          160 NYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA  239 (332)
Q Consensus       160 ~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~  239 (332)
                      +.++++|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++++
T Consensus       153 ~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          153 GWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             GGEEECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             HHeEECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHH
Confidence            99999999999999999999999999999788999999999999999999999999999999 99999999999999999


Q ss_pred             cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-Cc
Q 043260          240 FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GR  318 (332)
Q Consensus       240 lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~  318 (332)
                      +|++++++...   +++.+.+++++++.++|+|||++|. ..+..++++++++ |+++.+|........++...++. ++
T Consensus       232 lGa~~vi~~~~---~~~~~~v~~~~~g~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~  306 (363)
T 3uog_A          232 LGADHGINRLE---EDWVERVYALTGDRGADHILEIAGG-AGLGQSLKAVAPD-GRISVIGVLEGFEVSGPVGPLLLKSP  306 (363)
T ss_dssp             HTCSEEEETTT---SCHHHHHHHHHTTCCEEEEEEETTS-SCHHHHHHHEEEE-EEEEEECCCSSCEECCBTTHHHHTCC
T ss_pred             cCCCEEEcCCc---ccHHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhhcC-CEEEEEecCCCcccCcCHHHHHhCCc
Confidence            99999998554   7888999999998899999999996 5889999999998 99999998875446777777666 99


Q ss_pred             EEEEeeccc
Q 043260          319 NLKGTIFGG  327 (332)
Q Consensus       319 ~i~g~~~~~  327 (332)
                      ++.|+..+.
T Consensus       307 ~i~g~~~~~  315 (363)
T 3uog_A          307 VVQGISVGH  315 (363)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEEecCC
Confidence            999998764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=8.7e-51  Score=382.81  Aligned_cols=282  Identities=22%  Similarity=0.259  Sum_probs=246.7

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCC---CcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLF---PRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~---p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||+++++++++++++++|.|+|++|||||||+++|||++|++ +.|.++...+   |.++|||++| |+++|++ ++|+
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~   78 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TELE   78 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SSCC
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CCCC
Confidence            7999999988779999999999999999999999999999999 8886654556   8999999999 9999999 9999


Q ss_pred             CCCEEEeecccC--CCCCcccccCCcccCCCCccccccc-cCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           91 EGDIVIPTFIGE--CRECENCTSEMANLCLKYPFTFHGL-MPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        91 vGdrV~~~~~~~--c~~c~~c~~g~~~~c~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      +||||++.+..+  |+.|++|++|++++|++......|+ ..+                  |+|+||+.++++.++++|+
T Consensus        79 vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~------------------G~~aey~~v~~~~~~~iP~  140 (357)
T 2b5w_A           79 EGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAH------------------GYMSEFFTSPEKYLVRIPR  140 (357)
T ss_dssp             TTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEEC------------------CSCBSEEEEEGGGEEECCG
T ss_pred             CCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCC------------------cceeeEEEEchHHeEECCC
Confidence            999999998888  9999999999999999875331132 223                  4599999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCC------CEEEEECCChHHHHH-HHHH-HHcCCCeEEEEcCCcc---hHHH
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKG------SSVAVFGLGAVGLGV-MDRA-RIQGAAKIIGIDKNPC---RKDK  236 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g------~~vlV~G~g~vG~~~-~~la-~~~G~~~Vi~~~~~~~---~~~~  236 (332)
                      +++ ++| +++.++.|||+++ +.+++++|      ++|||+|+|++|+++ +|+| +.+|+++|++++++++   |+++
T Consensus       141 ~~~-~~a-al~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~  217 (357)
T 2b5w_A          141 SQA-ELG-FLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDI  217 (357)
T ss_dssp             GGS-TTG-GGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHH
T ss_pred             Ccc-hhh-hhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHH
Confidence            999 655 5667999999998 67899999      999999999999999 9999 9999955999999999   9999


Q ss_pred             HHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhH--
Q 043260          237 GEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI--  314 (332)
Q Consensus       237 ~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~--  314 (332)
                      ++++|++++ ++++   +++.+ ++++ ++ ++|+|||++|+...+..++++++++ |+++.+|.......++++..+  
T Consensus       218 ~~~lGa~~v-~~~~---~~~~~-i~~~-~g-g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~  289 (357)
T 2b5w_A          218 IEELDATYV-DSRQ---TPVED-VPDV-YE-QMDFIYEATGFPKHAIQSVQALAPN-GVGALLGVPSDWAFEVDAGAFHR  289 (357)
T ss_dssp             HHHTTCEEE-ETTT---SCGGG-HHHH-SC-CEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCCCCCCCCCHHHHHH
T ss_pred             HHHcCCccc-CCCc---cCHHH-HHHh-CC-CCCEEEECCCChHHHHHHHHHHhcC-CEEEEEeCCCCCCceecHHHHhH
Confidence            999999999 8876   56666 7777 66 9999999999977899999999998 999999987633456777776  


Q ss_pred             --hc-CcEEEEeeccc
Q 043260          315 --AL-GRNLKGTIFGG  327 (332)
Q Consensus       315 --~~-~~~i~g~~~~~  327 (332)
                        +. ++++.|+..+.
T Consensus       290 ~~~~~~~~i~g~~~~~  305 (357)
T 2b5w_A          290 EMVLHNKALVGSVNSH  305 (357)
T ss_dssp             HHHHTTCEEEECCCCC
T ss_pred             HHHhCCeEEEEeccCC
Confidence              44 99999987654

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=3.5e-50  Score=377.26  Aligned_cols=285  Identities=26%  Similarity=0.391  Sum_probs=254.4

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC--------CCCCCcccccceeEEEEEeCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP--------LPLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~--------~~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      |||+++++++.+++++++|.|+|+++||||||.+++||++|++ +.|.++        ...+|.++|||++|+|+++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~   80 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence            7999999998679999999999999999999999999999999 777554        2468999999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecC-CceEE
Q 043260           86 VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDA-NYVVK  164 (332)
Q Consensus        86 v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~-~~v~~  164 (332)
                      |++|++||||+..+..+|+.|++|++|++++|++....  |+..+|                  +|+||+.+|+ +.+++
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~--G~~~~G------------------~~aey~~v~~~~~~~~  140 (347)
T 1jvb_A           81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL--GINFDG------------------AYAEYVIVPHYKYMYK  140 (347)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEB--TTTBCC------------------SSBSEEEESCGGGEEE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccc--cccCCC------------------cceeEEEecCccceEE
Confidence            99999999999889999999999999999999987654  654445                  4999999999 99999


Q ss_pred             cCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHHcCC
Q 043260          165 VDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       165 lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      + +++++++||.+++++.|||+++ +.+++++|++|||+|+ |++|++++|+++.. |+ +|+++++++++++.++++|+
T Consensus       141 i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g~  217 (347)
T 1jvb_A          141 L-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAGA  217 (347)
T ss_dssp             C-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHTC
T ss_pred             e-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHhCC
Confidence            9 9999999999999999999998 4589999999999999 59999999999999 99 89999999999999999999


Q ss_pred             CeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEE
Q 043260          243 TDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLK  321 (332)
Q Consensus       243 ~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~  321 (332)
                      +.++++.+   .++.+.+.+++...++|++||++|+...+..++++++++ |+++.+|...... ++++..++. ++++.
T Consensus       218 ~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~-~~~~~~~~~~~~~i~  292 (347)
T 1jvb_A          218 DYVINASM---QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGADL-HYHAPLITLSEIQFV  292 (347)
T ss_dssp             SEEEETTT---SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCCCC-CCCHHHHHHHTCEEE
T ss_pred             CEEecCCC---ccHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCCCC-CCCHHHHHhCceEEE
Confidence            99998877   677777888776228999999999977889999999998 9999999876223 778777666 99999


Q ss_pred             Eeeccc
Q 043260          322 GTIFGG  327 (332)
Q Consensus       322 g~~~~~  327 (332)
                      |+..+.
T Consensus       293 g~~~~~  298 (347)
T 1jvb_A          293 GSLVGN  298 (347)
T ss_dssp             ECCSCC
T ss_pred             EEeccC
Confidence            987654

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=3.2e-49  Score=373.29  Aligned_cols=291  Identities=24%  Similarity=0.440  Sum_probs=247.4

Q ss_pred             cceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           12 IYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      +|+|+++..++..+.++++++|.|+|++|||||||.++|||++|++ +.|.++...+|.++|||++|+|+++|++|++|+
T Consensus        14 ~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~   93 (366)
T 1yqd_A           14 PVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVN   93 (366)
T ss_dssp             SEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             CeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEEECCCCCcCC
Confidence            5667777777766679999999999999999999999999999999 877665567899999999999999999999999


Q ss_pred             CCCEEEeecc-cCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCC
Q 043260           91 EGDIVIPTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSI  169 (332)
Q Consensus        91 vGdrV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~  169 (332)
                      +||||++.+. .+|+.|.+|++|++++|++......+....|.             ...|+|+||+.++++.++++|+++
T Consensus        94 vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~-------------~~~G~~aey~~v~~~~~~~~P~~l  160 (366)
T 1yqd_A           94 VGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGT-------------ITYGGYSNHMVANERYIIRFPDNM  160 (366)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSC-------------BCCCSSBSEEEEEGGGCEECCTTS
T ss_pred             CCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCC-------------cCCCccccEEEEchhhEEECCCCC
Confidence            9999987654 68999999999999999765433222211111             123579999999999999999999


Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCC-CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCeeeC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVE-KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTDFIN  247 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~-~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~v~~  247 (332)
                      ++++||.+++++.|||+++. ..+++ +|++|||+|+|++|++++|+++.+|+ +|+++++++++++.++ ++|++.+++
T Consensus       161 s~~~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~v~~  238 (366)
T 1yqd_A          161 PLDGGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGADSFLV  238 (366)
T ss_dssp             CTTTTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSEEEE
T ss_pred             CHHHhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCceEEe
Confidence            99999999999999999884 46788 99999999999999999999999999 9999999999998877 899999998


Q ss_pred             CCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      +.+   .   +.+.+.++  ++|+|||++|....+..++++++++ |+++.+|... ...+++...++. ++++.|+..+
T Consensus       239 ~~~---~---~~~~~~~~--~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~-~~~~~~~~~~~~~~~~i~g~~~~  308 (366)
T 1yqd_A          239 SRD---Q---EQMQAAAG--TLDGIIDTVSAVHPLLPLFGLLKSH-GKLILVGAPE-KPLELPAFSLIAGRKIVAGSGIG  308 (366)
T ss_dssp             TTC---H---HHHHHTTT--CEEEEEECCSSCCCSHHHHHHEEEE-EEEEECCCCS-SCEEECHHHHHTTTCEEEECCSC
T ss_pred             ccC---H---HHHHHhhC--CCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEccCC-CCCCcCHHHHHhCCcEEEEecCC
Confidence            865   3   34555553  7999999999865788999999998 9999999876 345677777766 9999998765


Q ss_pred             c
Q 043260          327 G  327 (332)
Q Consensus       327 ~  327 (332)
                      .
T Consensus       309 ~  309 (366)
T 1yqd_A          309 G  309 (366)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=6e-50  Score=382.33  Aligned_cols=290  Identities=23%  Similarity=0.308  Sum_probs=249.1

Q ss_pred             eeeeEEEecCCCCeEEEEEecCCC-CC-----CeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCC
Q 043260           14 YAAAVVCWGEGEPWKVEEIQVEPP-KA-----TEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEV   86 (332)
Q Consensus        14 ~~~a~~~~~~~~~l~~~~~~~p~~-~~-----~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   86 (332)
                      +|||+++++++. ++++++|.|+| ++     +||||||+++|||++|++ +.|.++ ..+|.++|||++|+|+++|++|
T Consensus         2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~-~~~p~v~GhE~~G~V~~vG~~v   79 (398)
T 2dph_A            2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGSDV   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred             ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC-CCCCcccCCceEEEEEEECCCC
Confidence            699999999875 99999999998 68     999999999999999999 877643 4679999999999999999999


Q ss_pred             CCCCCCCEEEeecccCCCCCcccccCCcccCCCCccc------cccccCCCCCcccccccceecccccCCceeeEEecCC
Q 043260           87 KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT------FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN  160 (332)
Q Consensus        87 ~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~------~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~  160 (332)
                      ++|++||||++.+..+|+.|++|++|++++|++....      ..|+..               ....|+|+||++++++
T Consensus        80 ~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~---------------~~~~G~~aey~~v~~~  144 (398)
T 2dph_A           80 ELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDL---------------KGWSGGQAEYVLVPYA  144 (398)
T ss_dssp             CSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTB---------------SSCCCSSBSEEEESSH
T ss_pred             CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCcccccccccccccccc---------------CCCCceeeeeEEeccc
Confidence            9999999999999999999999999999999972110      112210               0013579999999986


Q ss_pred             --ceEEcCCCCChhh----hhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 043260          161 --YVVKVDPSIDLSL----AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRK  234 (332)
Q Consensus       161 --~v~~lP~~~~~~~----aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~  234 (332)
                        .++++|+++++++    ||++++++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+
T Consensus       145 ~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~  223 (398)
T 2dph_A          145 DYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERL  223 (398)
T ss_dssp             HHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHH
T ss_pred             cCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence              8999999999998    888999999999998 788999999999999999999999999999987899999999999


Q ss_pred             HHHHHcCCCeeeCCCCCCCchH-HHHHHHhcCCCCccEEEEcCCChH--------------HHHHHHHHhccCCcEEEEE
Q 043260          235 DKGEAFGMTDFINPDDEPNKSI-SELVKEMTHGTGVDYGFECTGVAS--------------LISEALEATKLGKGKVMAI  299 (332)
Q Consensus       235 ~~~~~lga~~v~~~~~~~~~~~-~~~~~~~~~~~g~d~vid~~g~~~--------------~~~~~~~~l~~~~G~~v~~  299 (332)
                      ++++++|++ ++++.+   .++ .+.+++++++.++|+|||++|+..              .+.+++++++++ |+++.+
T Consensus       224 ~~a~~lGa~-~i~~~~---~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-G~iv~~  298 (398)
T 2dph_A          224 KLLSDAGFE-TIDLRN---SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAG-GAIGIP  298 (398)
T ss_dssp             HHHHTTTCE-EEETTS---SSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEE-EEEECC
T ss_pred             HHHHHcCCc-EEcCCC---cchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcC-CEEEEe
Confidence            999999996 888876   564 778888888889999999999752              689999999998 999999


Q ss_pred             cCCC------------CCcccCChHhHhc-CcEEEEeecc
Q 043260          300 GAAN------------EAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       300 G~~~------------~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      |...            ....+++...++. +++|.|+...
T Consensus       299 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~  338 (398)
T 2dph_A          299 GIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAP  338 (398)
T ss_dssp             SCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCC
T ss_pred             ccccccccccccccccCCcccccHHHHhhcCCEEEEeccC
Confidence            9862            1234566666555 9999987544

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.3e-49  Score=377.15  Aligned_cols=290  Identities=25%  Similarity=0.332  Sum_probs=247.1

Q ss_pred             eeeeEEEecCCCCeEEEEEecCCCC-CCe------EEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCC
Q 043260           14 YAAAVVCWGEGEPWKVEEIQVEPPK-ATE------VRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus        14 ~~~a~~~~~~~~~l~~~~~~~p~~~-~~e------VlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      +|||+++++++. ++++++|.|+|+ ++|      |||||++++||++|++ +.|.++ ..+|.++|||++|+|+++|++
T Consensus         2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~p~v~GhE~~G~V~~vG~~   79 (398)
T 1kol_A            2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRD   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTT
T ss_pred             ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC-CCCCcccCcccEEEEEEECCC
Confidence            699999998875 999999999997 898      9999999999999999 877653 457899999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCcccccCCcccCCCCcccc----ccccCCCCCcccccccceecccccCCceeeEEecCC-
Q 043260           86 VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF----HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN-  160 (332)
Q Consensus        86 v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~----~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~-  160 (332)
                      |++|++||||++.+..+|+.|++|++|++++|++.....    .|+...+              ...|+|+||++++++ 
T Consensus        80 v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~--------------~~~G~~aey~~v~~~~  145 (398)
T 1kol_A           80 VENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMG--------------DWTGGQAEYVLVPYAD  145 (398)
T ss_dssp             CCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSC--------------CBCCCSBSEEEESSHH
T ss_pred             CCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCC--------------CCCceeeeEEEecchh
Confidence            999999999999999999999999999999999864211    1221000              113679999999986 


Q ss_pred             -ceEEcCCCCChhh----hhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 043260          161 -YVVKVDPSIDLSL----AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD  235 (332)
Q Consensus       161 -~v~~lP~~~~~~~----aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~  235 (332)
                       .++++|+++++++    +|++++++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|++
T Consensus       146 ~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~  224 (398)
T 1kol_A          146 FNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLA  224 (398)
T ss_dssp             HHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CeEEECCCCcchhhhcccccccccHHHHHHHHH-HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHH
Confidence             8999999999988    788888999999998 4789999999999999999999999999999978999999999999


Q ss_pred             HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCCh---------------HHHHHHHHHhccCCcEEEEEc
Q 043260          236 KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVA---------------SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       236 ~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~---------------~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      +++++|++ ++++.+  .+++.+.+++++++.++|+|||++|+.               ..+.+++++++++ |+++.+|
T Consensus       225 ~a~~lGa~-~i~~~~--~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~G  300 (398)
T 1kol_A          225 HAKAQGFE-IADLSL--DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPG  300 (398)
T ss_dssp             HHHHTTCE-EEETTS--SSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECS
T ss_pred             HHHHcCCc-EEccCC--cchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcC-CEEEEec
Confidence            99999997 777765  133788898988888999999999985               2789999999998 9999999


Q ss_pred             CCC-CC-----------cccCChHhHhc-CcEEEEee
Q 043260          301 AAN-EA-----------KVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       301 ~~~-~~-----------~~~~~~~~~~~-~~~i~g~~  324 (332)
                      ... +.           ...++...++. ++++.|+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  337 (398)
T 1kol_A          301 LYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQ  337 (398)
T ss_dssp             CCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESS
T ss_pred             cccCCcccccccccccccccccHHHHhhcccEEEecc
Confidence            762 11           24566665555 88998864

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=5.4e-48  Score=375.01  Aligned_cols=297  Identities=17%  Similarity=0.210  Sum_probs=255.3

Q ss_pred             ccccceeeeEEEecC---------------CCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCC-----------
Q 043260            9 FLKIYYAAAVVCWGE---------------GEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKG-----------   61 (332)
Q Consensus         9 ~~~~~~~~a~~~~~~---------------~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~-----------   61 (332)
                      .++|.+|||++++++               .+.++++++|.|+|++|||||||.++|||++|++ ..+.           
T Consensus        25 ~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~  104 (456)
T 3krt_A           25 LPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERY  104 (456)
T ss_dssp             SCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHH
T ss_pred             CCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhc
Confidence            367899999999986               2349999999999999999999999999999986 3321           


Q ss_pred             --CC----CCCCC-cccccceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCc
Q 043260           62 --FP----LPLFP-RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSR  134 (332)
Q Consensus        62 --~~----~~~~p-~v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~  134 (332)
                        ..    ...+| .++|||++|+|+++|++|++|++||||++.+. .|..|..|..+..+.|++....  |+..+    
T Consensus       105 g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~~--G~~~~----  177 (456)
T 3krt_A          105 GRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRIW--GFETN----  177 (456)
T ss_dssp             HTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEET--TTTSS----
T ss_pred             cccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCcccccc--ccCCC----
Confidence              10    12567 69999999999999999999999999998654 6888999999999999988765  65432    


Q ss_pred             ccccccceecccccCCceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHh--hCCCCCCEEEEECC-ChHHHH
Q 043260          135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKE--FKVEKGSSVAVFGL-GAVGLG  211 (332)
Q Consensus       135 ~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~--~~~~~g~~vlV~G~-g~vG~~  211 (332)
                                   .|+|+||+++++++++++|+++++++||++++++.|||+++...  +++++|++|||+|+ |++|++
T Consensus       178 -------------~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~  244 (456)
T 3krt_A          178 -------------FGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSY  244 (456)
T ss_dssp             -------------SCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHH
T ss_pred             -------------CCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHH
Confidence                         13599999999999999999999999999998999999988654  78999999999998 999999


Q ss_pred             HHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC--------------chHHHHHHHhcCCCCccEEEEcCC
Q 043260          212 VMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN--------------KSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       212 ~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~--------------~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      ++|+|+.+|+ +||+++++++|+++++++|++.++++.+.+.              ..+.+.+++++++.++|+|||++|
T Consensus       245 avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G  323 (456)
T 3krt_A          245 ATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPG  323 (456)
T ss_dssp             HHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSC
T ss_pred             HHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCC
Confidence            9999999999 8999999999999999999999998876211              134578888898889999999999


Q ss_pred             ChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecccc
Q 043260          278 VASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGGI  328 (332)
Q Consensus       278 ~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~~  328 (332)
                      + ..+..++++++++ |+++.+|...+....++...++. +++|.|+..+.+
T Consensus       324 ~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  373 (456)
T 3krt_A          324 R-ETFGASVFVTRKG-GTITTCASTSGYMHEYDNRYLWMSLKRIIGSHFANY  373 (456)
T ss_dssp             H-HHHHHHHHHEEEE-EEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCH
T ss_pred             c-hhHHHHHHHhhCC-cEEEEEecCCCcccccCHHHHHhcCeEEEEeccCCH
Confidence            9 6899999999998 99999998876556677776666 889999987654

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=9.4e-48  Score=372.43  Aligned_cols=297  Identities=19%  Similarity=0.191  Sum_probs=251.7

Q ss_pred             cccccceeeeEEEecCC-------------CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-cc--------------
Q 043260            8 SFLKIYYAAAVVCWGEG-------------EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SS--------------   59 (332)
Q Consensus         8 ~~~~~~~~~a~~~~~~~-------------~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~--------------   59 (332)
                      ..++|.+|||+++++++             +.++++++|.|+|++|||||||+++|||++|++ ..              
T Consensus        18 ~~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~   97 (447)
T 4a0s_A           18 AAPVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNA   97 (447)
T ss_dssp             HSCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHH
T ss_pred             ccCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhc
Confidence            45789999999999987             249999999999999999999999999999974 21              


Q ss_pred             --CCCCC-CCCC-cccccceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcc
Q 043260           60 --KGFPL-PLFP-RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRM  135 (332)
Q Consensus        60 --g~~~~-~~~p-~v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~  135 (332)
                        +.++. ..+| .++|||++|+|+++|++|++|++||||++.+...|+.|+ |..+..+.|++....  |+..+     
T Consensus        98 ~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~-~~~~~~~~c~~~~~~--G~~~~-----  169 (447)
T 4a0s_A           98 RQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEP-ATHGDGMLGTEQRAW--GFETN-----  169 (447)
T ss_dssp             TTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSG-GGGTCTTCSTTCEET--TTTSS-----
T ss_pred             ccCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccc-ccccccccccccccc--cccCC-----
Confidence              11111 2466 699999999999999999999999999999988888776 556889999888765  65443     


Q ss_pred             cccccceecccccCCceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHH--hhCCCCCCEEEEECC-ChHHHHH
Q 043260          136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK--EFKVEKGSSVAVFGL-GAVGLGV  212 (332)
Q Consensus       136 ~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~--~~~~~~g~~vlV~G~-g~vG~~~  212 (332)
                                  .|+|+||+.+++++++++|+++++++||++++++.|||+++.+  .+++++|++|||+|+ |++|+++
T Consensus       170 ------------~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a  237 (447)
T 4a0s_A          170 ------------FGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYA  237 (447)
T ss_dssp             ------------SCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHH
T ss_pred             ------------CCceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHH
Confidence                        1359999999999999999999999999999999999999864  388999999999998 9999999


Q ss_pred             HHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC---------------chHHHHHHHhcCCCCccEEEEcCC
Q 043260          213 MDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN---------------KSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       213 ~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~---------------~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      +|+++.+|+ +|++++++++|+++++++|++.++++.+...               ..+.+.+++.+ +.++|+|||++|
T Consensus       238 ~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~g~Dvvid~~G  315 (447)
T 4a0s_A          238 IQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKA-GREPDIVFEHTG  315 (447)
T ss_dssp             HHHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHH-SSCCSEEEECSC
T ss_pred             HHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHh-CCCceEEEECCC
Confidence            999999999 8999999999999999999999987654110               11367788888 669999999999


Q ss_pred             ChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecccc
Q 043260          278 VASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGGI  328 (332)
Q Consensus       278 ~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~~  328 (332)
                      . ..+..++++++++ |+++.+|...+....++...++. ++++.|+..+.+
T Consensus       316 ~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  365 (447)
T 4a0s_A          316 R-VTFGLSVIVARRG-GTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGANH  365 (447)
T ss_dssp             H-HHHHHHHHHSCTT-CEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCH
T ss_pred             c-hHHHHHHHHHhcC-CEEEEEecCCCcccccCHHHHHhCCCEEEecCCCCH
Confidence            9 5889999999998 99999998775556677776666 889999887653

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=9.5e-47  Score=352.05  Aligned_cols=266  Identities=22%  Similarity=0.266  Sum_probs=238.5

Q ss_pred             cccccceeeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCC
Q 043260            8 SFLKIYYAAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGD   84 (332)
Q Consensus         8 ~~~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~   84 (332)
                      +.++|.+|||+++++++++  +++++.|.|+|++|||||||+++|||++|++ +.|.++ ..+|.++|||++|+|+++|+
T Consensus         2 ~~~~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~P~i~G~e~~G~V~~vG~   80 (334)
T 3qwb_A            2 KCTIPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYP-CEKPYVLGREASGTVVAKGK   80 (334)
T ss_dssp             ---CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSC-CCSSEECCSEEEEEEEEECT
T ss_pred             CCCCchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCC-CCCCCccccceEEEEEEECC
Confidence            4467899999999988765  8999999999999999999999999999999 887765 46899999999999999999


Q ss_pred             CCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEec-CCceE
Q 043260           85 EVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVD-ANYVV  163 (332)
Q Consensus        85 ~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~-~~~v~  163 (332)
                      +|++|++||||+..                                                ..|+|+||+.++ ++.++
T Consensus        81 ~v~~~~~GdrV~~~------------------------------------------------~~G~~aey~~v~~~~~~~  112 (334)
T 3qwb_A           81 GVTNFEVGDQVAYI------------------------------------------------SNSTFAQYSKISSQGPVM  112 (334)
T ss_dssp             TCCSCCTTCEEEEE------------------------------------------------CSSCSBSEEEEETTSSEE
T ss_pred             CCCCCCCCCEEEEe------------------------------------------------eCCcceEEEEecCcceEE
Confidence            99999999999832                                                124699999999 99999


Q ss_pred             EcCCCCChhh---hhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH
Q 043260          164 KVDPSIDLSL---AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA  239 (332)
Q Consensus       164 ~lP~~~~~~~---aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~  239 (332)
                      ++|+++++++   ||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +|++++++++|++++++
T Consensus       113 ~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  191 (334)
T 3qwb_A          113 KLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE  191 (334)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             ECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            9999999999   88888899999999877789999999999995 9999999999999999 99999999999999999


Q ss_pred             cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-Cc
Q 043260          240 FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GR  318 (332)
Q Consensus       240 lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~  318 (332)
                      +|++.++++.+   .++.+.+.+.+++.++|+|||++|. ..+..++++++++ |+++.+|...+...+++...++. ++
T Consensus       192 ~ga~~~~~~~~---~~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~  266 (334)
T 3qwb_A          192 YGAEYLINASK---EDILRQVLKFTNGKGVDASFDSVGK-DTFEISLAALKRK-GVFVSFGNASGLIPPFSITRLSPKNI  266 (334)
T ss_dssp             TTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEECCGG-GGHHHHHHHEEEE-EEEEECCCTTCCCCCBCGGGGTTTTC
T ss_pred             cCCcEEEeCCC---chHHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhccC-CEEEEEcCCCCCCCCcchhhhhhCce
Confidence            99999999988   8899999999988899999999998 5889999999998 99999998775445677777766 99


Q ss_pred             EEEEeecccc
Q 043260          319 NLKGTIFGGI  328 (332)
Q Consensus       319 ~i~g~~~~~~  328 (332)
                      ++.++..+++
T Consensus       267 ~~~~~~~~~~  276 (334)
T 3qwb_A          267 TLVRPQLYGY  276 (334)
T ss_dssp             EEECCCGGGG
T ss_pred             EEEEEEeccc
Confidence            9998776554

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=6.7e-47  Score=355.75  Aligned_cols=266  Identities=19%  Similarity=0.232  Sum_probs=238.7

Q ss_pred             cccceeeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCC
Q 043260           10 LKIYYAAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus        10 ~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      ++|.+|||+++++++.+  +++++.|.|+|++|||||||.+++||++|+. +.|.++. ..+|.++|||++|+|+++|++
T Consensus        24 ~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~  103 (353)
T 4dup_A           24 SLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPG  103 (353)
T ss_dssp             CCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECTT
T ss_pred             CCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECCC
Confidence            57889999999987654  9999999999999999999999999999999 8887654 457999999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEc
Q 043260           86 VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKV  165 (332)
Q Consensus        86 v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~l  165 (332)
                      |++|++||||+                             ++..+                  |+|+||+.++++.++++
T Consensus       104 v~~~~vGdrV~-----------------------------~~~~~------------------G~~aey~~v~~~~~~~~  136 (353)
T 4dup_A          104 VSGYAVGDKVC-----------------------------GLANG------------------GAYAEYCLLPAGQILPF  136 (353)
T ss_dssp             CCSCCTTCEEE-----------------------------EECSS------------------CCSBSEEEEEGGGEEEC
T ss_pred             CCCCCCCCEEE-----------------------------EecCC------------------CceeeEEEEcHHHcEeC
Confidence            99999999998                             33333                  35999999999999999


Q ss_pred             CCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe
Q 043260          166 DPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD  244 (332)
Q Consensus       166 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~  244 (332)
                      |+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|++++++++++++++++|++.
T Consensus       137 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  215 (353)
T 4dup_A          137 PKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAKR  215 (353)
T ss_dssp             CTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSE
T ss_pred             CCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCE
Confidence            9999999999999999999999988899999999999965 9999999999999999 8999999999999999999999


Q ss_pred             eeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCccc-CChHhHhc-CcEEEE
Q 043260          245 FINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVP-LNFPAIAL-GRNLKG  322 (332)
Q Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~-~~~~~~~~-~~~i~g  322 (332)
                      ++++.+   .++.+.+.+.+ +.++|+|||++|+. .+..++++++++ |+++.+|...+.... +++..++. ++++.|
T Consensus       216 ~~~~~~---~~~~~~~~~~~-~~g~Dvvid~~g~~-~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g  289 (353)
T 4dup_A          216 GINYRS---EDFAAVIKAET-GQGVDIILDMIGAA-YFERNIASLAKD-GCLSIIAFLGGAVAEKVNLSPIMVKRLTVTG  289 (353)
T ss_dssp             EEETTT---SCHHHHHHHHH-SSCEEEEEESCCGG-GHHHHHHTEEEE-EEEEECCCTTCSEEEEEECHHHHHTTCEEEE
T ss_pred             EEeCCc---hHHHHHHHHHh-CCCceEEEECCCHH-HHHHHHHHhccC-CEEEEEEecCCCcccCCCHHHHHhcCceEEE
Confidence            999987   88888898888 66999999999994 889999999998 999999987753333 67666666 999999


Q ss_pred             eeccccc
Q 043260          323 TIFGGIK  329 (332)
Q Consensus       323 ~~~~~~~  329 (332)
                      +.++.+.
T Consensus       290 ~~~~~~~  296 (353)
T 4dup_A          290 STMRPRT  296 (353)
T ss_dssp             CCSTTSC
T ss_pred             Eeccccc
Confidence            9877653

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=1.1e-47  Score=362.91  Aligned_cols=280  Identities=21%  Similarity=0.310  Sum_probs=236.3

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCC-CeEEEEEeeeecCccccc-ccC--CCCCCCC---CcccccceeEEEEEeCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKA-TEVRFKMLYASICHTDVL-SSK--GFPLPLF---PRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~-~~g--~~~~~~~---p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      |||+++++++++++++++|.|+|++ +||||||+++|||++|++ +.|  .++...+   |.++|||++|+|++  ++ +
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~-~   77 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY-H   77 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC-S
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC-C
Confidence            7999999988669999999999999 999999999999999999 887  5543456   99999999999999  77 8


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCcccccccc-CCCCCcccccccceecccccCCceeeEEecCCceEEcC
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD  166 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP  166 (332)
                      +|++||||++.+..+|+.|++|++|++++|++......|+. .+                  |+|+||++++++.++++|
T Consensus        78 ~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~------------------G~~aey~~v~~~~~~~iP  139 (366)
T 2cdc_A           78 GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMD------------------GFMREWWYDDPKYLVKIP  139 (366)
T ss_dssp             SCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEEC------------------CSCBSEEEECGGGEEEEC
T ss_pred             CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCC------------------CceeEEEEechHHeEECc
Confidence            89999999999999999999999999999998643211322 23                  469999999999999999


Q ss_pred             CCCChhhhhhcccchhhhHHHHH--H--hhCCC--C-------CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc--
Q 043260          167 PSIDLSLAGFLSCGYSSGFGAAW--K--EFKVE--K-------GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP--  231 (332)
Q Consensus       167 ~~~~~~~aa~l~~~~~ta~~al~--~--~~~~~--~-------g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~--  231 (332)
                      ++++ ++|| ++.++.|||+++.  +  ..+++  +       |++|||+|+|++|++++|+++.+|+ +|+++++++  
T Consensus       140 ~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~  216 (366)
T 2cdc_A          140 KSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPT  216 (366)
T ss_dssp             GGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCC
T ss_pred             CCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccc
Confidence            9999 8876 5679999999986  4  77888  8       9999999999999999999999999 999999998  


Q ss_pred             -chHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHH-HHHHHHhccCCcEEEEEcCCCCCcccC
Q 043260          232 -CRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLI-SEALEATKLGKGKVMAIGAANEAKVPL  309 (332)
Q Consensus       232 -~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~-~~~~~~l~~~~G~~v~~G~~~~~~~~~  309 (332)
                       +++++++++|++.+ + .+    ++.+.+.+ ++ .++|+|||++|+...+ +.++++++++ |+++.+|........+
T Consensus       217 ~~~~~~~~~~ga~~v-~-~~----~~~~~~~~-~~-~~~d~vid~~g~~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~  287 (366)
T 2cdc_A          217 EVEQTVIEETKTNYY-N-SS----NGYDKLKD-SV-GKFDVIIDATGADVNILGNVIPLLGRN-GVLGLFGFSTSGSVPL  287 (366)
T ss_dssp             HHHHHHHHHHTCEEE-E-CT----TCSHHHHH-HH-CCEEEEEECCCCCTHHHHHHGGGEEEE-EEEEECSCCCSCEEEE
T ss_pred             hHHHHHHHHhCCcee-c-hH----HHHHHHHH-hC-CCCCEEEECCCChHHHHHHHHHHHhcC-CEEEEEecCCCCcccc
Confidence             89999999999988 6 32    44455655 54 4899999999997678 9999999998 9999999876433667


Q ss_pred             ChHh---Hhc-CcEEEEeeccc
Q 043260          310 NFPA---IAL-GRNLKGTIFGG  327 (332)
Q Consensus       310 ~~~~---~~~-~~~i~g~~~~~  327 (332)
                      ++..   ++. ++++.|+..+.
T Consensus       288 ~~~~~~~~~~~~~~i~g~~~~~  309 (366)
T 2cdc_A          288 DYKTLQEIVHTNKTIIGLVNGQ  309 (366)
T ss_dssp             EHHHHHHHHHTTCEEEECCCCC
T ss_pred             ChhhhHHHHhcCcEEEEecCCC
Confidence            7766   555 99999987653

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.3e-46  Score=352.29  Aligned_cols=265  Identities=21%  Similarity=0.277  Sum_probs=228.3

Q ss_pred             ccccceeeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCC
Q 043260            9 FLKIYYAAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGD   84 (332)
Q Consensus         9 ~~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~   84 (332)
                      +.+|.+|||+++++++.+  ++++++|.|+|++|||||||+++|||++|+. +.|.++. ..+|.++|||++|+|+++|+
T Consensus        16 ~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~   95 (342)
T 4eye_A           16 TQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPE   95 (342)
T ss_dssp             --CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECCT
T ss_pred             ccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEECC
Confidence            467899999999987655  9999999999999999999999999999999 8887653 57899999999999999999


Q ss_pred             CCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEE
Q 043260           85 EVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVK  164 (332)
Q Consensus        85 ~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~  164 (332)
                      +++ |++||||+.                             +..+                  |+|+||+.++++.+++
T Consensus        96 ~v~-~~vGDrV~~-----------------------------~~~~------------------G~~aey~~v~~~~~~~  127 (342)
T 4eye_A           96 GSG-IKPGDRVMA-----------------------------FNFI------------------GGYAERVAVAPSNILP  127 (342)
T ss_dssp             TSS-CCTTCEEEE-----------------------------ECSS------------------CCSBSEEEECGGGEEE
T ss_pred             CCC-CCCCCEEEE-----------------------------ecCC------------------CcceEEEEEcHHHeEE
Confidence            999 999999983                             3233                  3599999999999999


Q ss_pred             cCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC
Q 043260          165 VDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT  243 (332)
Q Consensus       165 lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~  243 (332)
                      +|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++.+|+ +|++++++++++++++++|++
T Consensus       128 iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~  206 (342)
T 4eye_A          128 TPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGAD  206 (342)
T ss_dssp             CCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCS
T ss_pred             CCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCc
Confidence            99999999999999999999999988899999999999998 9999999999999999 999999999999999999999


Q ss_pred             eeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEE
Q 043260          244 DFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKG  322 (332)
Q Consensus       244 ~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g  322 (332)
                      .++++.    +++.+.+++.+++.++|+|||++|++ .+..++++++++ |+++.+|...+....++...++. ++++.|
T Consensus       207 ~v~~~~----~~~~~~v~~~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g  280 (342)
T 4eye_A          207 IVLPLE----EGWAKAVREATGGAGVDMVVDPIGGP-AFDDAVRTLASE-GRLLVVGFAAGGIPTIKVNRLLLRNASLIG  280 (342)
T ss_dssp             EEEESS----TTHHHHHHHHTTTSCEEEEEESCC---CHHHHHHTEEEE-EEEEEC----------CCCCGGGTTCEEEE
T ss_pred             EEecCc----hhHHHHHHHHhCCCCceEEEECCchh-HHHHHHHhhcCC-CEEEEEEccCCCCCccCHHHHhhcCCEEEE
Confidence            999875    56788899999888999999999994 889999999998 99999998765434556555555 999999


Q ss_pred             eecccc
Q 043260          323 TIFGGI  328 (332)
Q Consensus       323 ~~~~~~  328 (332)
                      +..+.+
T Consensus       281 ~~~~~~  286 (342)
T 4eye_A          281 VAWGEF  286 (342)
T ss_dssp             CCHHHH
T ss_pred             Eehhhh
Confidence            986543

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=7.8e-46  Score=346.72  Aligned_cols=259  Identities=22%  Similarity=0.296  Sum_probs=229.6

Q ss_pred             ccceeeeEEEecCCCC---eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCC
Q 043260           11 KIYYAAAVVCWGEGEP---WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus        11 ~~~~~~a~~~~~~~~~---l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      |+|+|||+++++++.+   ++++++|.|+|++|||||||+++|||++|+. +.|.++. ..+|.++|||++|+|+++|++
T Consensus         1 M~~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~   80 (340)
T 3gms_A            1 MSLHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAF   80 (340)
T ss_dssp             -CCEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTT
T ss_pred             CCcccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCC
Confidence            3478999999999886   8999999999999999999999999999999 8887654 578999999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEc
Q 043260           86 VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKV  165 (332)
Q Consensus        86 v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~l  165 (332)
                      |++|++||||+                             ++..+                  |+|+||+.+|++.++++
T Consensus        81 v~~~~vGdrV~-----------------------------~~~~~------------------G~~aey~~v~~~~~~~v  113 (340)
T 3gms_A           81 VSRELIGKRVL-----------------------------PLRGE------------------GTWQEYVKTSADFVVPI  113 (340)
T ss_dssp             SCGGGTTCEEE-----------------------------ECSSS------------------CSSBSEEEEEGGGEEEC
T ss_pred             CCCCCCCCEEE-----------------------------ecCCC------------------ccceeEEEcCHHHeEEC
Confidence            99999999998                             33223                  45999999999999999


Q ss_pred             CCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe
Q 043260          166 DPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD  244 (332)
Q Consensus       166 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~  244 (332)
                      |+++++++||++++.+.|||+++.+.+++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|++.
T Consensus       114 P~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~  192 (340)
T 3gms_A          114 PDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAY  192 (340)
T ss_dssp             CTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSE
T ss_pred             CCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcE
Confidence            9999999999999999999999988899999999999998 6999999999999999 9999999999999999999999


Q ss_pred             eeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc--CcEEEE
Q 043260          245 FINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL--GRNLKG  322 (332)
Q Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~--~~~i~g  322 (332)
                      ++++.+   .++.+.+.+++++.++|+|||++|+. ....++++++++ |+++.+|....  .+++...+..  ++.+..
T Consensus       193 ~~~~~~---~~~~~~~~~~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~~~~~~~~  265 (340)
T 3gms_A          193 VIDTST---APLYETVMELTNGIGADAAIDSIGGP-DGNELAFSLRPN-GHFLTIGLLSG--IQVNWAEIVTKAKVHANI  265 (340)
T ss_dssp             EEETTT---SCHHHHHHHHTTTSCEEEEEESSCHH-HHHHHHHTEEEE-EEEEECCCTTS--CCCCHHHHHHTSCCEEEE
T ss_pred             EEeCCc---ccHHHHHHHHhCCCCCcEEEECCCCh-hHHHHHHHhcCC-CEEEEEeecCC--CCCCHHHhhhcccceEEE
Confidence            999987   88999999999888999999999996 556677999998 99999998764  3445554443  555555


Q ss_pred             ee
Q 043260          323 TI  324 (332)
Q Consensus       323 ~~  324 (332)
                      +.
T Consensus       266 ~~  267 (340)
T 3gms_A          266 FH  267 (340)
T ss_dssp             CC
T ss_pred             EE
Confidence            44

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=2.6e-45  Score=346.17  Aligned_cols=264  Identities=17%  Similarity=0.193  Sum_probs=228.3

Q ss_pred             ccccceeeeEEEecC---C--CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEe
Q 043260            9 FLKIYYAAAVVCWGE---G--EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESI   82 (332)
Q Consensus         9 ~~~~~~~~a~~~~~~---~--~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~v   82 (332)
                      ...||+|||++++++   +  +.++++++|.|+|++|||||||++++||++|+. +.|.++...+|.++|||++|+|+++
T Consensus        17 ~~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~v   96 (363)
T 4dvj_A           17 NLYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAV   96 (363)
T ss_dssp             --CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEE
T ss_pred             hhhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEe
Confidence            345789999999865   2  339999999999999999999999999999999 8887766788999999999999999


Q ss_pred             CCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCce
Q 043260           83 GDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYV  162 (332)
Q Consensus        83 G~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v  162 (332)
                      |++|++|++||||+..+                          +...+                  |+|+||+.++++.+
T Consensus        97 G~~v~~~~vGdrV~~~~--------------------------~~~~~------------------G~~aey~~v~~~~~  132 (363)
T 4dvj_A           97 GPDVTLFRPGDEVFYAG--------------------------SIIRP------------------GTNAEFHLVDERIV  132 (363)
T ss_dssp             CTTCCSCCTTCEEEECC--------------------------CTTSC------------------CSCBSEEEEEGGGC
T ss_pred             CCCCCCCCCCCEEEEcc--------------------------CCCCC------------------ccceEEEEeCHHHe
Confidence            99999999999998432                          11222                  46999999999999


Q ss_pred             EEcCCCCChhhhhhcccchhhhHHHHHHhhCCC-----CCCEEEEECC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHH
Q 043260          163 VKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE-----KGSSVAVFGL-GAVGLGVMDRARIQ-GAAKIIGIDKNPCRKD  235 (332)
Q Consensus       163 ~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~-----~g~~vlV~G~-g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~  235 (332)
                      +++|+++++++||++++++.|||+++.+..+++     +|++|||+|+ |++|++++|+|+.+ |+ +|++++++++|++
T Consensus       133 ~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~  211 (363)
T 4dvj_A          133 GRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQE  211 (363)
T ss_dssp             EECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHH
T ss_pred             eECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHH
Confidence            999999999999999999999999998888888     8999999995 99999999999985 76 9999999999999


Q ss_pred             HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHh
Q 043260          236 KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIA  315 (332)
Q Consensus       236 ~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~  315 (332)
                      +++++|+++++++.    +++.+.++++ .+.++|+|||++|++..+..++++++++ |+++.+|..    .+++...++
T Consensus       212 ~~~~lGad~vi~~~----~~~~~~v~~~-~~~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~----~~~~~~~~~  281 (363)
T 4dvj_A          212 WVKSLGAHHVIDHS----KPLAAEVAAL-GLGAPAFVFSTTHTDKHAAEIADLIAPQ-GRFCLIDDP----SAFDIMLFK  281 (363)
T ss_dssp             HHHHTTCSEEECTT----SCHHHHHHTT-CSCCEEEEEECSCHHHHHHHHHHHSCTT-CEEEECSCC----SSCCGGGGT
T ss_pred             HHHHcCCCEEEeCC----CCHHHHHHHh-cCCCceEEEECCCchhhHHHHHHHhcCC-CEEEEECCC----CccchHHHh
Confidence            99999999999986    3577788887 4559999999999977899999999998 999999753    356666666


Q ss_pred             c-CcEEEEeeccc
Q 043260          316 L-GRNLKGTIFGG  327 (332)
Q Consensus       316 ~-~~~i~g~~~~~  327 (332)
                      . ++++.++....
T Consensus       282 ~k~~~i~~~~~~~  294 (363)
T 4dvj_A          282 RKAVSIHHELMFT  294 (363)
T ss_dssp             TTTCEEEECCTTH
T ss_pred             hccceEEEEEeec
Confidence            6 89999977654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=3.5e-45  Score=344.19  Aligned_cols=268  Identities=19%  Similarity=0.280  Sum_probs=233.5

Q ss_pred             ecccccceeeeEEEecCCC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEe
Q 043260            7 ISFLKIYYAAAVVCWGEGE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESI   82 (332)
Q Consensus         7 ~~~~~~~~~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~v   82 (332)
                      .....+++|||+++++++.  .+++++++.|+|+++||||||.++|||++|+. +.|.++. ..+|.++|||++|+|+++
T Consensus        15 ~~~~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~v   94 (354)
T 2j8z_A           15 TENLYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAEL   94 (354)
T ss_dssp             ------CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEE
T ss_pred             ccccchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEE
Confidence            3456688999999998875  38999999999999999999999999999999 8776554 347899999999999999


Q ss_pred             CCCC-CCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCc
Q 043260           83 GDEV-KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANY  161 (332)
Q Consensus        83 G~~v-~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~  161 (332)
                      |++| ++|++||||+.                             +..+                  |+|+||+.++++.
T Consensus        95 G~~v~~~~~vGdrV~~-----------------------------~~~~------------------G~~aey~~v~~~~  127 (354)
T 2j8z_A           95 GPGCQGHWKIGDTAMA-----------------------------LLPG------------------GGQAQYVTVPEGL  127 (354)
T ss_dssp             CSCC--CCCTTCEEEE-----------------------------ECSS------------------CCSBSEEEEEGGG
T ss_pred             CCCcCCCCCCCCEEEE-----------------------------ecCC------------------CcceeEEEeCHHH
Confidence            9999 99999999983                             2222                  3599999999999


Q ss_pred             eEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc
Q 043260          162 VVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF  240 (332)
Q Consensus       162 v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l  240 (332)
                      ++++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++
T Consensus       128 ~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~  206 (354)
T 2j8z_A          128 LMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL  206 (354)
T ss_dssp             EEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred             cEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc
Confidence            99999999999999999999999999977889999999999996 9999999999999999 999999999999999999


Q ss_pred             CCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCCh-HhHhc-Cc
Q 043260          241 GMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNF-PAIAL-GR  318 (332)
Q Consensus       241 ga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~-~~~~~-~~  318 (332)
                      |++.++++.+   .++.+.+.+.+++.++|++||++|+. .+..++++++++ |+++.+|...+....+++ ..++. ++
T Consensus       207 g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~G~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~  281 (354)
T 2j8z_A          207 GAAAGFNYKK---EDFSEATLKFTKGAGVNLILDCIGGS-YWEKNVNCLALD-GRWVLYGLMGGGDINGPLFSKLLFKRG  281 (354)
T ss_dssp             TCSEEEETTT---SCHHHHHHHHTTTSCEEEEEESSCGG-GHHHHHHHEEEE-EEEEECCCTTCSCCCSCHHHHHHHTTC
T ss_pred             CCcEEEecCC---hHHHHHHHHHhcCCCceEEEECCCch-HHHHHHHhccCC-CEEEEEeccCCCccCCChhHHHHhCCC
Confidence            9999999887   77888888888777899999999995 888999999998 999999987654456777 66665 99


Q ss_pred             EEEEeeccc
Q 043260          319 NLKGTIFGG  327 (332)
Q Consensus       319 ~i~g~~~~~  327 (332)
                      ++.|+..+.
T Consensus       282 ~i~g~~~~~  290 (354)
T 2j8z_A          282 SLITSLLRS  290 (354)
T ss_dssp             EEEECCSTT
T ss_pred             EEEEEEccc
Confidence            999987654

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=6.6e-45  Score=341.25  Aligned_cols=259  Identities=20%  Similarity=0.241  Sum_probs=226.8

Q ss_pred             ceeeeEEEecCC-----CCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCC
Q 043260           13 YYAAAVVCWGEG-----EPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEV   86 (332)
Q Consensus        13 ~~~~a~~~~~~~-----~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   86 (332)
                      |+|||+++++++     +.++++++|.|+|++|||||||++++||++|++ +.+.  ...+|.++|||++|+|+++|++|
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~--~~~~p~i~G~e~~G~V~~vG~~v   78 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD--VSKAPRVLGFDAIGVVESVGNEV   78 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC--CSSSCBCCCCCEEEEEEEECTTC
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC--CCCCCcCcCCccEEEEEEeCCCC
Confidence            689999999865     359999999999999999999999999999999 7776  35789999999999999999999


Q ss_pred             CCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcC
Q 043260           87 KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD  166 (332)
Q Consensus        87 ~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP  166 (332)
                      ++|++||||+....                          ...                  .|+|+||+.++++.++++|
T Consensus        79 ~~~~~GdrV~~~~~--------------------------~~~------------------~G~~aey~~v~~~~~~~iP  114 (346)
T 3fbg_A           79 TMFNQGDIVYYSGS--------------------------PDQ------------------NGSNAEYQLINERLVAKAP  114 (346)
T ss_dssp             CSCCTTCEEEECCC--------------------------TTS------------------CCSSBSEEEEEGGGEEECC
T ss_pred             CcCCCCCEEEEcCC--------------------------CCC------------------CcceeEEEEEChHHeEECC
Confidence            99999999984311                          112                  2469999999999999999


Q ss_pred             CCCChhhhhhcccchhhhHHHHHHhhCCC------CCCEEEEEC-CChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH
Q 043260          167 PSIDLSLAGFLSCGYSSGFGAAWKEFKVE------KGSSVAVFG-LGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA  239 (332)
Q Consensus       167 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~------~g~~vlV~G-~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~  239 (332)
                      +++++++||++++++.|||+++.+..+++      +|++|||+| +|++|++++|+++.+|+ +|+++++++++++++++
T Consensus       115 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  193 (346)
T 3fbg_A          115 KNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK  193 (346)
T ss_dssp             SSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH
T ss_pred             CCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence            99999999999999999999998888888      999999996 59999999999999999 99999999999999999


Q ss_pred             cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-Cc
Q 043260          240 FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GR  318 (332)
Q Consensus       240 lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~  318 (332)
                      +|++.++++++    ++.+.+++. .+.++|+||||+|++..+..++++++++ |+++.+|...   .+++...++. ++
T Consensus       194 lGa~~vi~~~~----~~~~~~~~~-~~~g~Dvv~d~~g~~~~~~~~~~~l~~~-G~iv~~~~~~---~~~~~~~~~~~~~  264 (346)
T 3fbg_A          194 MGADIVLNHKE----SLLNQFKTQ-GIELVDYVFCTFNTDMYYDDMIQLVKPR-GHIATIVAFE---NDQDLNALKPKSL  264 (346)
T ss_dssp             HTCSEEECTTS----CHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHEEEE-EEEEESSCCS---SCBCGGGGTTTTC
T ss_pred             cCCcEEEECCc----cHHHHHHHh-CCCCccEEEECCCchHHHHHHHHHhccC-CEEEEECCCC---CCCccccccccce
Confidence            99999998863    577778777 5569999999999977789999999998 9999998543   4566666665 89


Q ss_pred             EEEEeeccc
Q 043260          319 NLKGTIFGG  327 (332)
Q Consensus       319 ~i~g~~~~~  327 (332)
                      ++.++++..
T Consensus       265 ~~~~~~~~~  273 (346)
T 3fbg_A          265 SFSHEFMFA  273 (346)
T ss_dssp             EEEECCTTH
T ss_pred             EEEEEEEec
Confidence            999976653

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=3.1e-45  Score=340.61  Aligned_cols=261  Identities=24%  Similarity=0.324  Sum_probs=234.0

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      |||+++++++.+  +++++.+.|+|++|||||||++++||++|++ +.|.++...+|.++|||++|+|+++|++|++|++
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~   81 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKV   81 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999988765  8999999999999999999999999999999 8888776688999999999999999999999999


Q ss_pred             CCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           92 GDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        92 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      ||||+..+                            ..                  .|+|+||+.++++.++++|+++++
T Consensus        82 GdrV~~~~----------------------------~~------------------~G~~aey~~v~~~~~~~~P~~~~~  115 (325)
T 3jyn_A           82 GDRVAYGT----------------------------GP------------------LGAYSEVHVLPEANLVKLADSVSF  115 (325)
T ss_dssp             TCEEEESS----------------------------SS------------------SCCSBSEEEEEGGGEEECCTTSCH
T ss_pred             CCEEEEec----------------------------CC------------------CccccceEEecHHHeEECCCCCCH
Confidence            99998421                            11                  246999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      ++||++++...|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|++++++++|+++++++|++.++++.+
T Consensus       116 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~  194 (325)
T 3jyn_A          116 EQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYSH  194 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT
T ss_pred             HHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC
Confidence            9999999999999999988889999999999995 9999999999999999 9999999999999999999999999987


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc--CcEEEEeeccc
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL--GRNLKGTIFGG  327 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~--~~~i~g~~~~~  327 (332)
                         .++.+.+.+++++.++|+|||++|+ ..+..++++++++ |+++.+|...+....++...++.  ++++.+..++.
T Consensus       195 ---~~~~~~~~~~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (325)
T 3jyn_A          195 ---EDVAKRVLELTDGKKCPVVYDGVGQ-DTWLTSLDSVAPR-GLVVSFGNASGPVSGVNLGILAQKDSVYVTRPTLGS  268 (325)
T ss_dssp             ---SCHHHHHHHHTTTCCEEEEEESSCG-GGHHHHHTTEEEE-EEEEECCCTTCCCCSCCTHHHHHTTSCEEECCCHHH
T ss_pred             ---ccHHHHHHHHhCCCCceEEEECCCh-HHHHHHHHHhcCC-CEEEEEecCCCCCCCCCHHHHhhcCcEEEEeeeeee
Confidence               8899999999988899999999999 5889999999998 99999998775434677666655  46776655433

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=6.9e-45  Score=340.77  Aligned_cols=261  Identities=19%  Similarity=0.261  Sum_probs=228.6

Q ss_pred             ccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC--CCCCcccccceeEEEEEeCCCCC
Q 043260           11 KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL--PLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        11 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~--~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      .+++|||+++++++++++++++|.|+|++|||||||++++||++|+. +.|..+.  ..+|.++|||++|+|+++|++|+
T Consensus         4 ~~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~   83 (343)
T 3gaz_A            4 TTPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVD   83 (343)
T ss_dssp             --CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CchhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCC
Confidence            36789999999998889999999999999999999999999999999 7776432  57899999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      +|++||||+....                         |..                 ...|+|+||+.++++.++++|+
T Consensus        84 ~~~vGdrV~~~~~-------------------------g~~-----------------~~~G~~aey~~v~~~~~~~~P~  121 (343)
T 3gaz_A           84 SFRVGDAVFGLTG-------------------------GVG-----------------GLQGTHAQFAAVDARLLASKPA  121 (343)
T ss_dssp             SCCTTCEEEEECC-------------------------SST-----------------TCCCSSBSEEEEEGGGEEECCT
T ss_pred             CCCCCCEEEEEeC-------------------------CCC-----------------CCCcceeeEEEecHHHeeeCCC
Confidence            9999999984321                         110                 0135699999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      ++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++ .+++++++++++|++. +
T Consensus       122 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~-i  198 (343)
T 3gaz_A          122 ALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATP-I  198 (343)
T ss_dssp             TSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEE-E
T ss_pred             CCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCE-e
Confidence            99999999999999999999878899999999999996 9999999999999999 89999 8899999999999998 6


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      + .+   .++.+.+.+.+++.++|+|||++|+ ..+..++++++++ |+++.+|...    .++...+.. ++++.|++.
T Consensus       199 ~-~~---~~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~----~~~~~~~~~~~~~~~g~~~  268 (343)
T 3gaz_A          199 D-AS---REPEDYAAEHTAGQGFDLVYDTLGG-PVLDASFSAVKRF-GHVVSCLGWG----THKLAPLSFKQATYSGVFT  268 (343)
T ss_dssp             E-TT---SCHHHHHHHHHTTSCEEEEEESSCT-HHHHHHHHHEEEE-EEEEESCCCS----CCCCHHHHHTTCEEEECCT
T ss_pred             c-cC---CCHHHHHHHHhcCCCceEEEECCCc-HHHHHHHHHHhcC-CeEEEEcccC----ccccchhhhcCcEEEEEEe
Confidence            6 55   7788889999988899999999998 5899999999998 9999999765    344455555 999999865


Q ss_pred             c
Q 043260          326 G  326 (332)
Q Consensus       326 ~  326 (332)
                      .
T Consensus       269 ~  269 (343)
T 3gaz_A          269 L  269 (343)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=3.3e-44  Score=339.61  Aligned_cols=267  Identities=17%  Similarity=0.183  Sum_probs=224.7

Q ss_pred             cccceeeeEEEecCCCCeEEE-EEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCC
Q 043260           10 LKIYYAAAVVCWGEGEPWKVE-EIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        10 ~~~~~~~a~~~~~~~~~l~~~-~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      ++|.+|||+++++++. ++++ ++|.|+|++|||||||++++||++|++ +.+.   ..+|.++|||++|+|+++|++|+
T Consensus         7 ~~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~p~v~G~e~~G~V~~vG~~v~   82 (371)
T 3gqv_A            7 IPPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---ATPWAFLGTDYAGTVVAVGSDVT   82 (371)
T ss_dssp             CCCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC--------CCTTSCCCSEEEEEEEEECTTCC
T ss_pred             CCchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC---CCCCccCccccEEEEEEeCCCCC
Confidence            4678999999999976 9998 999999999999999999999999999 6553   35689999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      +|++||||+..       |..|..+              ...+                  |+|+||+.++++.++++|+
T Consensus        83 ~~~~GdrV~~~-------~~~~~~~--------------~~~~------------------G~~aey~~v~~~~~~~~P~  123 (371)
T 3gqv_A           83 HIQVGDRVYGA-------QNEMCPR--------------TPDQ------------------GAFSQYTVTRGRVWAKIPK  123 (371)
T ss_dssp             SCCTTCEEEEE-------CCTTCTT--------------CTTC------------------CSSBSEEECCTTCEEECCT
T ss_pred             CCCCCCEEEEe-------ccCCCCC--------------CCCC------------------CcCcCeEEEchhheEECCC
Confidence            99999999743       3344322              1222                  4699999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHh-hCC-----------CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKE-FKV-----------EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK  234 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~-~~~-----------~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~  234 (332)
                      ++++++||++++++.|||+++.+. .++           ++|++|||+|+ |++|++++|+|+.+|+ +||++. +++|+
T Consensus       124 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~  201 (371)
T 3gqv_A          124 GLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNF  201 (371)
T ss_dssp             TCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGH
T ss_pred             CCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHH
Confidence            999999999999999999999776 553           89999999999 9999999999999999 898886 78999


Q ss_pred             HHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHh-ccCCcEEEEEcCCCC-----Cccc
Q 043260          235 DKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEAT-KLGKGKVMAIGAANE-----AKVP  308 (332)
Q Consensus       235 ~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l-~~~~G~~v~~G~~~~-----~~~~  308 (332)
                      ++++++|+++++++++   .++.+.+++++++ ++|+|||++|++..+..+++++ +++ |+++.+|....     ...+
T Consensus       202 ~~~~~lGa~~vi~~~~---~~~~~~v~~~t~g-~~d~v~d~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~~~~  276 (371)
T 3gqv_A          202 DLAKSRGAEEVFDYRA---PNLAQTIRTYTKN-NLRYALDCITNVESTTFCFAAIGRAG-GHYVSLNPFPEHAATRKMVT  276 (371)
T ss_dssp             HHHHHTTCSEEEETTS---TTHHHHHHHHTTT-CCCEEEESSCSHHHHHHHHHHSCTTC-EEEEESSCCCC---CCSCEE
T ss_pred             HHHHHcCCcEEEECCC---chHHHHHHHHccC-CccEEEECCCchHHHHHHHHHhhcCC-CEEEEEecCccccccccccc
Confidence            9999999999999988   8899999999988 5999999999988899999999 587 99999996542     1122


Q ss_pred             CC---hHhHhc-CcEEEEeecc
Q 043260          309 LN---FPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       309 ~~---~~~~~~-~~~i~g~~~~  326 (332)
                      ++   ...++. ++++.|++..
T Consensus       277 ~~~~~~~~~~~k~~~~~g~~~~  298 (371)
T 3gqv_A          277 TDWTLGPTIFGEGSTWPAPYGR  298 (371)
T ss_dssp             EEECCGGGGGTSCBSCSTTTCB
T ss_pred             eeeeeeeeeccccccccccccc
Confidence            11   223443 8888877544

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=1.2e-45  Score=346.73  Aligned_cols=266  Identities=15%  Similarity=0.135  Sum_probs=229.2

Q ss_pred             cccceeeeEEEe-----cCCCCeEEEEE---------ecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCccccc
Q 043260           10 LKIYYAAAVVCW-----GEGEPWKVEEI---------QVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGH   73 (332)
Q Consensus        10 ~~~~~~~a~~~~-----~~~~~l~~~~~---------~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~   73 (332)
                      +++.+|||++++     +..+.++++++         |.|+|++|||||||++++||++|++ +.|.++. ..+|.++||
T Consensus         6 ~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~   85 (349)
T 3pi7_A            6 TIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGF   85 (349)
T ss_dssp             CCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCCS
T ss_pred             CCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCccc
Confidence            467889999999     23334777777         9999999999999999999999999 8887653 468999999


Q ss_pred             ceeEEEEEeCCCC-CCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCce
Q 043260           74 EGVGMVESIGDEV-KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMT  152 (332)
Q Consensus        74 e~~G~Vv~vG~~v-~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a  152 (332)
                      |++|+|+++|++| ++|++||||+...                          |...+                  |+|+
T Consensus        86 E~~G~V~~vG~~v~~~~~vGdrV~~~~--------------------------g~~~~------------------G~~a  121 (349)
T 3pi7_A           86 EGVGTIVAGGDEPYAKSLVGKRVAFAT--------------------------GLSNW------------------GSWA  121 (349)
T ss_dssp             EEEEEEEEECSSHHHHHHTTCEEEEEC--------------------------TTSSC------------------CSSB
T ss_pred             eEEEEEEEECCCccCCCCCCCEEEEec--------------------------cCCCC------------------ccce
Confidence            9999999999999 9999999998542                          22233                  4599


Q ss_pred             eeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCC-CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          153 EYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKG-SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       153 ~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g-~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ||+.++++.++++|+++++++||++++...|||+++ +.++ ++| ++|||+|+ |++|++++|+++.+|+ +|++++++
T Consensus       122 ey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~  198 (349)
T 3pi7_A          122 EYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMF-DIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRR  198 (349)
T ss_dssp             SEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHH-HHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESC
T ss_pred             eeEeechHHeEECCCCCCHHHHhhccccHHHHHHHH-HHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            999999999999999999999999999999999655 6666 677 68888855 9999999999999999 99999999


Q ss_pred             cchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCC
Q 043260          231 PCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLN  310 (332)
Q Consensus       231 ~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~  310 (332)
                      ++|+++++++|+++++++++   +++.+.+++++++.++|+|||++|+. .+..++++++++ |+++.+|........++
T Consensus       199 ~~~~~~~~~~Ga~~~~~~~~---~~~~~~v~~~~~~~g~D~vid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~  273 (349)
T 3pi7_A          199 DEQIALLKDIGAAHVLNEKA---PDFEATLREVMKAEQPRIFLDAVTGP-LASAIFNAMPKR-ARWIIYGRLDPDATVIR  273 (349)
T ss_dssp             GGGHHHHHHHTCSEEEETTS---TTHHHHHHHHHHHHCCCEEEESSCHH-HHHHHHHHSCTT-CEEEECCCSCCSCCCCS
T ss_pred             HHHHHHHHHcCCCEEEECCc---HHHHHHHHHHhcCCCCcEEEECCCCh-hHHHHHhhhcCC-CEEEEEeccCCCCCCCC
Confidence            99999999999999999987   88999999998877999999999985 668999999998 99999997765556677


Q ss_pred             h-HhHhc-CcEEEEeeccc
Q 043260          311 F-PAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       311 ~-~~~~~-~~~i~g~~~~~  327 (332)
                      . ..++. ++++.|+..+.
T Consensus       274 ~~~~~~~~~~~i~g~~~~~  292 (349)
T 3pi7_A          274 EPGQLIFQHKHIEGFWLSE  292 (349)
T ss_dssp             CTHHHHHSCCEEEECCHHH
T ss_pred             chhhhhccccEEEEEEehh
Confidence            6 66665 99999998765

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.2e-44  Score=337.22  Aligned_cols=262  Identities=23%  Similarity=0.339  Sum_probs=230.7

Q ss_pred             ccceeeeEEEecCCCC--eEE-EEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCC
Q 043260           11 KIYYAAAVVCWGEGEP--WKV-EEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus        11 ~~~~~~a~~~~~~~~~--l~~-~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      .+.+|||+++++++.+  +++ +++|.|+|++|||||||.++|||++|+. +.|.++. ..+|.++|||++|+|+++|++
T Consensus        26 ~~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~  105 (351)
T 1yb5_A           26 GQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDN  105 (351)
T ss_dssp             --CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTT
T ss_pred             CcceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCC
Confidence            4567999999987643  888 8999999999999999999999999999 7776543 468999999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEc
Q 043260           86 VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKV  165 (332)
Q Consensus        86 v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~l  165 (332)
                      |++|++||||+..+.                            .                  .|+|+||+.++++.++++
T Consensus       106 v~~~~vGdrV~~~~~----------------------------~------------------~G~~aey~~v~~~~~~~~  139 (351)
T 1yb5_A          106 ASAFKKGDRVFTSST----------------------------I------------------SGGYAEYALAADHTVYKL  139 (351)
T ss_dssp             CTTCCTTCEEEESCC----------------------------S------------------SCSSBSEEEEEGGGEEEC
T ss_pred             CCCCCCCCEEEEeCC----------------------------C------------------CCcceeEEEECHHHeEEC
Confidence            999999999984321                            1                  246999999999999999


Q ss_pred             CCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe
Q 043260          166 DPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD  244 (332)
Q Consensus       166 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~  244 (332)
                      |+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++.
T Consensus       140 P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~  218 (351)
T 1yb5_A          140 PEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHE  218 (351)
T ss_dssp             CTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSE
T ss_pred             CCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCCE
Confidence            9999999999999999999999977889999999999998 9999999999999999 9999999999999999999999


Q ss_pred             eeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEe
Q 043260          245 FINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGT  323 (332)
Q Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~  323 (332)
                      ++++.+   .++.+.+.+.+++.++|++||++|+. .+..++++++++ |+++.+|...  ..++++..++. ++++.|+
T Consensus       219 ~~d~~~---~~~~~~~~~~~~~~~~D~vi~~~G~~-~~~~~~~~l~~~-G~iv~~g~~~--~~~~~~~~~~~~~~~i~g~  291 (351)
T 1yb5_A          219 VFNHRE---VNYIDKIKKYVGEKGIDIIIEMLANV-NLSKDLSLLSHG-GRVIVVGSRG--TIEINPRDTMAKESSIIGV  291 (351)
T ss_dssp             EEETTS---TTHHHHHHHHHCTTCEEEEEESCHHH-HHHHHHHHEEEE-EEEEECCCCS--CEEECTHHHHTTTCEEEEC
T ss_pred             EEeCCC---chHHHHHHHHcCCCCcEEEEECCChH-HHHHHHHhccCC-CEEEEEecCC--CCccCHHHHHhCCcEEEEE
Confidence            998887   77888888888877899999999984 788999999998 9999999753  35566666666 8999998


Q ss_pred             ecc
Q 043260          324 IFG  326 (332)
Q Consensus       324 ~~~  326 (332)
                      ...
T Consensus       292 ~~~  294 (351)
T 1yb5_A          292 TLF  294 (351)
T ss_dssp             CGG
T ss_pred             Eee
Confidence            654

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1.7e-44  Score=340.49  Aligned_cols=267  Identities=18%  Similarity=0.236  Sum_probs=227.0

Q ss_pred             cceeeeEEEecCCCC---eEEEEEecCCCC--CCeEEEEEeeeecCccccc-ccCCCCC-CCCC---------cccccce
Q 043260           12 IYYAAAVVCWGEGEP---WKVEEIQVEPPK--ATEVRFKMLYASICHTDVL-SSKGFPL-PLFP---------RVLGHEG   75 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~---l~~~~~~~p~~~--~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p---------~v~G~e~   75 (332)
                      |++|||+++++++.+   ++++++|.|+|.  +|||||||+++|||++|++ +.|.++. ..+|         .++|||+
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~   80 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence            678999999999864   899999999887  9999999999999999999 8876553 3467         8999999


Q ss_pred             eEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeE
Q 043260           76 VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYM  155 (332)
Q Consensus        76 ~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~  155 (332)
                      +|+|+++|++|++|++||||+..+.                                              ..|+|+||+
T Consensus        81 ~G~V~~vG~~v~~~~vGdrV~~~~~----------------------------------------------~~G~~aey~  114 (364)
T 1gu7_A           81 LFEVIKVGSNVSSLEAGDWVIPSHV----------------------------------------------NFGTWRTHA  114 (364)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS----------------------------------------------CCCCSBSEE
T ss_pred             EEEEEEeCCCCCcCCCCCEEEecCC----------------------------------------------CCCcchheE
Confidence            9999999999999999999984321                                              124699999


Q ss_pred             EecCCceEEcCC-----------CCChhhhhhcccchhhhHHHHHHhhCCCCC-CEEEEECC-ChHHHHHHHHHHHcCCC
Q 043260          156 VVDANYVVKVDP-----------SIDLSLAGFLSCGYSSGFGAAWKEFKVEKG-SSVAVFGL-GAVGLGVMDRARIQGAA  222 (332)
Q Consensus       156 ~v~~~~v~~lP~-----------~~~~~~aa~l~~~~~ta~~al~~~~~~~~g-~~vlV~G~-g~vG~~~~~la~~~G~~  222 (332)
                      .++++.++++|+           ++++++||++++++.|||+++.+.+++++| ++|||+|+ |++|++++|+|+.+|+ 
T Consensus       115 ~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-  193 (364)
T 1gu7_A          115 LGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-  193 (364)
T ss_dssp             EEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-
T ss_pred             ecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-
Confidence            999999999998           899999999999999999999766789999 99999998 9999999999999999 


Q ss_pred             eEEEEcCCcch----HHHHHHcCCCeeeCCCCCCCchHHHHHHHhc--CCCCccEEEEcCCChHHHHHHHHHhccCCcEE
Q 043260          223 KIIGIDKNPCR----KDKGEAFGMTDFINPDDEPNKSISELVKEMT--HGTGVDYGFECTGVASLISEALEATKLGKGKV  296 (332)
Q Consensus       223 ~Vi~~~~~~~~----~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~--~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~  296 (332)
                      ++|++.++.++    +++++++|+++++++++....++.+.+++++  ++.++|+|||++|+... ..++++++++ |++
T Consensus       194 ~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~~-~~~~~~l~~~-G~~  271 (364)
T 1gu7_A          194 NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSS-TGIARKLNNN-GLM  271 (364)
T ss_dssp             EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHH-HHHHHTSCTT-CEE
T ss_pred             EEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchhH-HHHHHHhccC-CEE
Confidence            88888766554    6778999999999875200145677788887  55689999999998644 4889999998 999


Q ss_pred             EEEcCCCCCcccCChHhHhc-CcEEEEeeccc
Q 043260          297 MAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       297 v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      +.+|........++...++. ++++.|++...
T Consensus       272 v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~  303 (364)
T 1gu7_A          272 LTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTE  303 (364)
T ss_dssp             EECCCCSSCCEEECHHHHHHSCCEEEECCHHH
T ss_pred             EEecCCCCCCcccCHHHHhhcCcEEEEEchhH
Confidence            99998764456777776665 99999987654

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.5e-44  Score=337.70  Aligned_cols=260  Identities=20%  Similarity=0.277  Sum_probs=218.4

Q ss_pred             cceeeeEEEecCCC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCC
Q 043260           12 IYYAAAVVCWGEGE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        12 ~~~~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      .|+|||+++++++.  .+++++.+.|+|++|||||||++++||++|++ +.|.++. ..+|.++|||++|+|+++|++|+
T Consensus         1 sm~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (349)
T 4a27_A            1 SMEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVK   80 (349)
T ss_dssp             CCCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCC
T ss_pred             CceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCC
Confidence            37899999999885  39999999999999999999999999999999 8887653 57899999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      +|++||||+.                             +..+                  |+|+||+.++++.++++|+
T Consensus        81 ~~~~GdrV~~-----------------------------~~~~------------------G~~aey~~v~~~~~~~iP~  113 (349)
T 4a27_A           81 GYEIGDRVMA-----------------------------FVNY------------------NAWAEVVCTPVEFVYKIPD  113 (349)
T ss_dssp             SCCTTCEEEE-----------------------------ECSS------------------CCSBSEEEEEGGGEEECCT
T ss_pred             CCCCCCEEEE-----------------------------ecCC------------------CcceEEEEecHHHeEECCC
Confidence            9999999983                             3333                  3599999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      ++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|..+|++++ ++++++.++ +|+++++
T Consensus       114 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~  191 (349)
T 4a27_A          114 DMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHLF  191 (349)
T ss_dssp             TSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEEE
Confidence            99999999999999999999988899999999999998 99999999999999755888887 667888888 9999999


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC---C-------------cccCC
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE---A-------------KVPLN  310 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~---~-------------~~~~~  310 (332)
                      + .+   .++.+.+++++++ ++|+||||+|++ .+..++++++++ |+++.+|....   .             ..+++
T Consensus       192 ~-~~---~~~~~~~~~~~~~-g~Dvv~d~~g~~-~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (349)
T 4a27_A          192 D-RN---ADYVQEVKRISAE-GVDIVLDCLCGD-NTGKGLSLLKPL-GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVN  264 (349)
T ss_dssp             E-TT---SCHHHHHHHHCTT-CEEEEEEECC--------CTTEEEE-EEEEEEC-------------------------C
T ss_pred             c-CC---ccHHHHHHHhcCC-CceEEEECCCch-hHHHHHHHhhcC-CEEEEECCCcccccccccccccccccccccccC
Confidence            8 65   7888889888765 999999999995 568999999998 99999997642   1             13466


Q ss_pred             hHhHhc-CcEEEEeeccc
Q 043260          311 FPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       311 ~~~~~~-~~~i~g~~~~~  327 (332)
                      +..++. ++++.|+....
T Consensus       265 ~~~l~~~~~~i~g~~~~~  282 (349)
T 4a27_A          265 PIKLYEENKVIAGFSLLN  282 (349)
T ss_dssp             HHHHHHHTCEEEEECHHH
T ss_pred             HHHHhhcCceEEEEeehh
Confidence            677666 99999987643

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=2.2e-44  Score=333.42  Aligned_cols=230  Identities=13%  Similarity=0.145  Sum_probs=199.5

Q ss_pred             cceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           12 IYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |++|||+++++..+.++++++|.|+|++|||||||++++||++|++ +.|.++...+|.++|||++|+|+++|++|++|+
T Consensus         2 M~tMka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   81 (315)
T 3goh_A            2 MEQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKM   81 (315)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGG
T ss_pred             CcceEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCC
Confidence            5689999999533349999999999999999999999999999999 888777678999999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||||+..+                          +...+                  |+|+||+.++++.++++|++++
T Consensus        82 vGdrV~~~~--------------------------~~~~~------------------G~~aey~~v~~~~~~~iP~~~~  117 (315)
T 3goh_A           82 LGRRVAYHT--------------------------SLKRH------------------GSFAEFTVLNTDRVMTLPDNLS  117 (315)
T ss_dssp             TTCEEEEEC--------------------------CTTSC------------------CSSBSEEEEETTSEEECCTTSC
T ss_pred             CCCEEEEeC--------------------------CCCCC------------------cccccEEEEcHHHhccCcCCCC
Confidence            999999543                          22222                  4699999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      +++||++++++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+ +|++++ +++|+++++++|++++++  +
T Consensus       118 ~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~--d  192 (315)
T 3goh_A          118 FERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR--E  192 (315)
T ss_dssp             HHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES--S
T ss_pred             HHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc--C
Confidence            999999999999999999 88999999999999999999999999999999 999999 999999999999999984  1


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                            .+.   +  +.++|+|||++|++ .+..++++++++ |+++.+|...
T Consensus       193 ------~~~---v--~~g~Dvv~d~~g~~-~~~~~~~~l~~~-G~~v~~g~~~  232 (315)
T 3goh_A          193 ------PSQ---V--TQKYFAIFDAVNSQ-NAAALVPSLKAN-GHIICIQDRI  232 (315)
T ss_dssp             ------GGG---C--CSCEEEEECC--------TTGGGEEEE-EEEEEECCC-
T ss_pred             ------HHH---h--CCCccEEEECCCch-hHHHHHHHhcCC-CEEEEEeCCC
Confidence                  111   2  55899999999995 558899999998 9999998654

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=3.4e-44  Score=337.79  Aligned_cols=267  Identities=22%  Similarity=0.311  Sum_probs=223.6

Q ss_pred             cccccceeeeEEEecCCCC---eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEe
Q 043260            8 SFLKIYYAAAVVCWGEGEP---WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESI   82 (332)
Q Consensus         8 ~~~~~~~~~a~~~~~~~~~---l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~v   82 (332)
                      ...++.+|||+++++++.+   +++++.|.|+|+++||||||.++|||++|+. +.|.++. ..+|.++|||++|+|+++
T Consensus        20 ~~~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~v   99 (357)
T 1zsy_A           20 FQSMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAV   99 (357)
T ss_dssp             CCCCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEE
T ss_pred             hhhCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEe
Confidence            3456778999999999874   8899999999999999999999999999999 8886654 357999999999999999


Q ss_pred             CCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCce
Q 043260           83 GDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYV  162 (332)
Q Consensus        83 G~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v  162 (332)
                      |++|++|++||||+..+.                                              ..|+|+||+.++++.+
T Consensus       100 G~~v~~~~vGdrV~~~~~----------------------------------------------~~G~~aey~~v~~~~~  133 (357)
T 1zsy_A          100 GSNVTGLKPGDWVIPANA----------------------------------------------GLGTWRTEAVFSEEAL  133 (357)
T ss_dssp             CTTCCSCCTTCEEEESSS----------------------------------------------CSCCSBSEEEEEGGGE
T ss_pred             CCCCCCCCCCCEEEEcCC----------------------------------------------CCccceeEEecCHHHc
Confidence            999999999999984321                                              1246999999999999


Q ss_pred             EEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc----chHHHH
Q 043260          163 VKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP----CRKDKG  237 (332)
Q Consensus       163 ~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~----~~~~~~  237 (332)
                      +++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ ++|++..+.    ++++++
T Consensus       134 ~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~  212 (357)
T 1zsy_A          134 IQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRL  212 (357)
T ss_dssp             EEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHH
T ss_pred             EECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHH
Confidence            9999999999999999889999999977789999999999998 9999999999999999 666655433    256788


Q ss_pred             HHcCCCeeeCCCCCCCchHHHHHHHhcCCC-CccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc
Q 043260          238 EAFGMTDFINPDDEPNKSISELVKEMTHGT-GVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL  316 (332)
Q Consensus       238 ~~lga~~v~~~~~~~~~~~~~~~~~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~  316 (332)
                      +++|+++++++.+   . ..+.+.+++.+. ++|+|||++|++ ...+++++++++ |+++.+|........++...++.
T Consensus       213 ~~lGa~~vi~~~~---~-~~~~~~~~~~~~~~~Dvvid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~  286 (357)
T 1zsy_A          213 KSLGAEHVITEEE---L-RRPEMKNFFKDMPQPRLALNCVGGK-SSTELLRQLARG-GTMVTYGGMAKQPVVASVSLLIF  286 (357)
T ss_dssp             HHTTCSEEEEHHH---H-HSGGGGGTTSSSCCCSEEEESSCHH-HHHHHHTTSCTT-CEEEECCCCTTCCBCCCHHHHHH
T ss_pred             HhcCCcEEEecCc---c-hHHHHHHHHhCCCCceEEEECCCcH-HHHHHHHhhCCC-CEEEEEecCCCCCCCCCHHHHHh
Confidence            9999999997642   1 123345555443 599999999985 556799999998 99999987654456777777665


Q ss_pred             -CcEEEEeeccc
Q 043260          317 -GRNLKGTIFGG  327 (332)
Q Consensus       317 -~~~i~g~~~~~  327 (332)
                       ++++.|+..+.
T Consensus       287 ~~~~i~g~~~~~  298 (357)
T 1zsy_A          287 KDLKLRGFWLSQ  298 (357)
T ss_dssp             SCCEEEECCHHH
T ss_pred             cCceEEEEEcch
Confidence             99999987653

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=5.1e-44  Score=331.85  Aligned_cols=255  Identities=17%  Similarity=0.171  Sum_probs=214.1

Q ss_pred             cccceeeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCC-----CCCCCCcccccceeEEEEE
Q 043260           10 LKIYYAAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGF-----PLPLFPRVLGHEGVGMVES   81 (332)
Q Consensus        10 ~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~-----~~~~~p~v~G~e~~G~Vv~   81 (332)
                      +.|++|||+++++++.+  +++++.|.|+|++|||||||++++||++|++ +.|..     ....+|.++|||++|+|++
T Consensus         2 ~~m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~   81 (321)
T 3tqh_A            2 NAMKEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIE   81 (321)
T ss_dssp             ---CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEE
T ss_pred             CccccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEE
Confidence            34689999999988766  9999999999999999999999999999999 77721     2357899999999999999


Q ss_pred             eCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCc
Q 043260           82 IGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANY  161 (332)
Q Consensus        82 vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~  161 (332)
                      +|++|++|++||||+..+..+                         ..                  .|+|+||+.++++.
T Consensus        82 vG~~v~~~~~GdrV~~~~~~~-------------------------~~------------------~G~~aey~~v~~~~  118 (321)
T 3tqh_A           82 LGSDVNNVNIGDKVMGIAGFP-------------------------DH------------------PCCYAEYVCASPDT  118 (321)
T ss_dssp             ECTTCCSCCTTCEEEEECSTT-------------------------TC------------------CCCSBSEEEECGGG
T ss_pred             eCCCCCCCCCCCEEEEccCCC-------------------------CC------------------CCcceEEEEecHHH
Confidence            999999999999998653211                         11                  24699999999999


Q ss_pred             eEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEEC-CChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc
Q 043260          162 VVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFG-LGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF  240 (332)
Q Consensus       162 v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G-~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l  240 (332)
                      ++++|+++++++||++++++.|||+++ +.+++++|++|||+| +|++|++++|+|+.+|+ +|++++ +++++++++++
T Consensus       119 ~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~l  195 (321)
T 3tqh_A          119 IIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKAL  195 (321)
T ss_dssp             EEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHH
T ss_pred             hccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHHc
Confidence            999999999999999999999999999 889999999999998 59999999999999999 899887 56678999999


Q ss_pred             CCCeeeCCCCCCCch-HHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhH-hcCc
Q 043260          241 GMTDFINPDDEPNKS-ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI-ALGR  318 (332)
Q Consensus       241 ga~~v~~~~~~~~~~-~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~-~~~~  318 (332)
                      |+++++++++   .+ +.+.+      .++|+|||++|++ .+.+++++++++ |+++.+|.... ...  ...+ .+++
T Consensus       196 Ga~~~i~~~~---~~~~~~~~------~g~D~v~d~~g~~-~~~~~~~~l~~~-G~iv~~g~~~~-~~~--~~~~~~~~~  261 (321)
T 3tqh_A          196 GAEQCINYHE---EDFLLAIS------TPVDAVIDLVGGD-VGIQSIDCLKET-GCIVSVPTITA-GRV--IEVAKQKHR  261 (321)
T ss_dssp             TCSEEEETTT---SCHHHHCC------SCEEEEEESSCHH-HHHHHGGGEEEE-EEEEECCSTTH-HHH--HHHHHHTTC
T ss_pred             CCCEEEeCCC---cchhhhhc------cCCCEEEECCCcH-HHHHHHHhccCC-CEEEEeCCCCc-hhh--hhhhhhcce
Confidence            9999999887   55 43332      4799999999996 559999999998 99999987653 111  1222 3388


Q ss_pred             EEEEee
Q 043260          319 NLKGTI  324 (332)
Q Consensus       319 ~i~g~~  324 (332)
                      ++.+++
T Consensus       262 ~~~~~~  267 (321)
T 3tqh_A          262 RAFGLL  267 (321)
T ss_dssp             EEECCC
T ss_pred             EEEEEe
Confidence            888854

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=1.1e-43  Score=331.28  Aligned_cols=259  Identities=23%  Similarity=0.324  Sum_probs=225.5

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCC--CC-CCCCcccccceeEEEEEeCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGF--PL-PLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~--~~-~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      |||+++++++.+  +++++.|.|+|++|||||||.+++||++|++ +.|.+  +. ..+|.++|||++|+|+++|++|++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            899999987643  8899999999999999999999999999999 87765  22 458999999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      |++||||+..+.                            .                  .|+|+||+.++++.++++|++
T Consensus        82 ~~~GdrV~~~~~----------------------------~------------------~G~~aey~~v~~~~~~~iP~~  115 (333)
T 1wly_A           82 FTVGERVCTCLP----------------------------P------------------LGAYSQERLYPAEKLIKVPKD  115 (333)
T ss_dssp             CCTTCEEEECSS----------------------------S------------------CCCSBSEEEEEGGGCEECCTT
T ss_pred             CCCCCEEEEecC----------------------------C------------------CCcceeEEEecHHHcEeCCCC
Confidence            999999974311                            0                  246999999999999999999


Q ss_pred             CChhh--hhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee
Q 043260          169 IDLSL--AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF  245 (332)
Q Consensus       169 ~~~~~--aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v  245 (332)
                      +++++  ||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++.+
T Consensus       116 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~~~  194 (333)
T 1wly_A          116 LDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHHT  194 (333)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEE
T ss_pred             CChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEE
Confidence            99999  99999999999999977789999999999997 9999999999999999 99999999999999999999999


Q ss_pred             eCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChH-hHhc-C--cEEE
Q 043260          246 INPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFP-AIAL-G--RNLK  321 (332)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~-~~~~-~--~~i~  321 (332)
                      +++.+   .++.+.+.+.+++.++|++||++|+ ..+..++++++++ |+++.+|...+...+++.. .++. +  +++.
T Consensus       195 ~d~~~---~~~~~~i~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~  269 (333)
T 1wly_A          195 INYST---QDFAEVVREITGGKGVDVVYDSIGK-DTLQKSLDCLRPR-GMCAAYGHASGVADPIRVVEDLGVRGSLFITR  269 (333)
T ss_dssp             EETTT---SCHHHHHHHHHTTCCEEEEEECSCT-TTHHHHHHTEEEE-EEEEECCCTTCCCCCCCHHHHTTTTTSCEEEC
T ss_pred             EECCC---HHHHHHHHHHhCCCCCeEEEECCcH-HHHHHHHHhhccC-CEEEEEecCCCCcCCCChhHhhhhcCCcEEEE
Confidence            98877   7788888888877789999999999 6889999999998 9999999876434567766 5555 7  8999


Q ss_pred             Eeec
Q 043260          322 GTIF  325 (332)
Q Consensus       322 g~~~  325 (332)
                      |++.
T Consensus       270 g~~~  273 (333)
T 1wly_A          270 PALW  273 (333)
T ss_dssp             CCGG
T ss_pred             Eeeh
Confidence            8855

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=4.7e-44  Score=332.31  Aligned_cols=260  Identities=16%  Similarity=0.169  Sum_probs=222.3

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||+++++++++  ++++++|.|+|++|||||||++++||++|++ +.|.++. ..+|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            899999999875  8899999999999999999999999999999 8887654 5789999999999999998  57899


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||||++.+   |.                    .|...+                  |+|+||+.+|++.++++|++++
T Consensus        79 vGdrV~~~~---~~--------------------~g~~~~------------------G~~aey~~v~~~~~~~iP~~~~  117 (324)
T 3nx4_A           79 AGQEVLLTG---WG--------------------VGENHW------------------GGLAERARVKGDWLVALPAGLS  117 (324)
T ss_dssp             TTCEEEEEC---TT--------------------BTTTBC------------------CSSBSEEEECGGGCEECCTTCC
T ss_pred             CCCEEEEcc---cc--------------------cCCCCC------------------CceeeEEecCHHHcEECCCCCC
Confidence            999999653   11                    133333                  4599999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHH--HhhCCCCCC-EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee
Q 043260          171 LSLAGFLSCGYSSGFGAAW--KEFKVEKGS-SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~--~~~~~~~g~-~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~  246 (332)
                      +++||++++++.|||+++.  ...++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|+++++
T Consensus       118 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi  196 (324)
T 3nx4_A          118 SRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANRIL  196 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSEEE
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEE
Confidence            9999999999999998875  345566643 4999998 9999999999999999 999999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          247 NPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      ++++   .+.   +++++++ ++|+|||++|++ .+..++++++++ |+++.+|.......+++...++. ++++.|+..
T Consensus       197 ~~~~---~~~---~~~~~~~-~~d~v~d~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~~  267 (324)
T 3nx4_A          197 SRDE---FAE---SRPLEKQ-LWAGAIDTVGDK-VLAKVLAQMNYG-GCVAACGLAGGFALPTTVMPFILRNVRLQGVDS  267 (324)
T ss_dssp             EGGG---SSC---CCSSCCC-CEEEEEESSCHH-HHHHHHHTEEEE-EEEEECCCTTCSEEEEESHHHHHHCCEEEECCS
T ss_pred             ecCC---HHH---HHhhcCC-CccEEEECCCcH-HHHHHHHHHhcC-CEEEEEecCCCCCCCCCHHHHhhcCeEEEEEec
Confidence            8865   222   4455554 899999999985 899999999998 99999998875456677666666 999999875


Q ss_pred             cc
Q 043260          326 GG  327 (332)
Q Consensus       326 ~~  327 (332)
                      ..
T Consensus       268 ~~  269 (324)
T 3nx4_A          268 VM  269 (324)
T ss_dssp             TT
T ss_pred             cc
Confidence            44

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.6e-43  Score=326.84  Aligned_cols=259  Identities=20%  Similarity=0.274  Sum_probs=226.5

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKE   91 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   91 (332)
                      |||+++++++.+  +++++++.|+|+++||||||.+++||++|++ +.|.++...+|.++|||++|+|+++|++|++|++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~   81 (327)
T 1qor_A            2 ATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKA   81 (327)
T ss_dssp             CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999987643  8899999999999999999999999999999 8886655568999999999999999999999999


Q ss_pred             CCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           92 GDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        92 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      ||||. .+                          | ..                  .|+|+||+.++++.++++|+++++
T Consensus        82 GdrV~-~~--------------------------g-~~------------------~G~~aey~~v~~~~~~~iP~~l~~  115 (327)
T 1qor_A           82 GDRVV-YA--------------------------Q-SA------------------LGAYSSVHNIIADKAAILPAAISF  115 (327)
T ss_dssp             TCEEE-ES--------------------------C-CS------------------SCCSBSEEEEEGGGEEECCTTSCH
T ss_pred             CCEEE-EC--------------------------C-CC------------------CceeeeEEEecHHHcEECCCCCCH
Confidence            99994 21                          1 01                  246999999999999999999999


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      ++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++.++++.+
T Consensus       116 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~  194 (327)
T 1qor_A          116 EQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYRE  194 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT
T ss_pred             HHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEECCC
Confidence            9999999999999999977889999999999996 9999999999999999 9999999999999999999999998877


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc--CcEEEEeec
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL--GRNLKGTIF  325 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~--~~~i~g~~~  325 (332)
                         .++.+.+.+.+.+.++|++||++|. ..+..++++++++ |+++.+|...+...+++...++.  ++++.++..
T Consensus       195 ---~~~~~~~~~~~~~~~~D~vi~~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (327)
T 1qor_A          195 ---EDLVERLKEITGGKKVRVVYDSVGR-DTWERSLDCLQRR-GLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSL  266 (327)
T ss_dssp             ---SCHHHHHHHHTTTCCEEEEEECSCG-GGHHHHHHTEEEE-EEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCH
T ss_pred             ---ccHHHHHHHHhCCCCceEEEECCch-HHHHHHHHHhcCC-CEEEEEecCCCCCCccCHHHHhhccceEEEccch
Confidence               7788888888877789999999994 6899999999998 99999998764334566655544  577776543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=2.4e-42  Score=325.78  Aligned_cols=261  Identities=17%  Similarity=0.200  Sum_probs=224.7

Q ss_pred             cccceeeeEEEecCCC----CeEE-EEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEe
Q 043260           10 LKIYYAAAVVCWGEGE----PWKV-EEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESI   82 (332)
Q Consensus        10 ~~~~~~~a~~~~~~~~----~l~~-~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~v   82 (332)
                      +++.+|||+++++++.    .+++ +++|.|+|++|||||||.++|||++|+. +.|.++. ..+|.++|||++|+|+++
T Consensus        19 ~~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~v   98 (362)
T 2c0c_A           19 YFQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVAL   98 (362)
T ss_dssp             HHCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEE
T ss_pred             cchhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEE
Confidence            4567899999999874    3889 9999999999999999999999999999 8886643 568999999999999999


Q ss_pred             CCCCC-CCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCc
Q 043260           83 GDEVK-ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANY  161 (332)
Q Consensus        83 G~~v~-~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~  161 (332)
                      |++|+ +|++||||+...                                                .|+|+||+.++++.
T Consensus        99 G~~V~~~~~vGdrV~~~~------------------------------------------------~G~~aey~~v~~~~  130 (362)
T 2c0c_A           99 GLSASARYTVGQAVAYMA------------------------------------------------PGSFAEYTVVPASI  130 (362)
T ss_dssp             CTTGGGTCCTTCEEEEEC------------------------------------------------SCCSBSEEEEEGGG
T ss_pred             CCCccCCCCCCCEEEEcc------------------------------------------------CCcceeEEEEcHHH
Confidence            99999 999999998321                                                24699999999999


Q ss_pred             eEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc
Q 043260          162 VVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF  240 (332)
Q Consensus       162 v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l  240 (332)
                      ++++|+. + .++|++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|++++++++++++++++
T Consensus       131 ~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~  207 (362)
T 2c0c_A          131 ATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSL  207 (362)
T ss_dssp             CEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT
T ss_pred             eEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHc
Confidence            9999996 4 4567788899999999988889999999999996 9999999999999999 899999999999999999


Q ss_pred             CCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCc--c--------cCC
Q 043260          241 GMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAK--V--------PLN  310 (332)
Q Consensus       241 ga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~--~--------~~~  310 (332)
                      |++.++++.+   .++.+.+++.++ .++|+|||++|. ..+..++++++++ |+++.+|......  .        .++
T Consensus       208 Ga~~~~~~~~---~~~~~~~~~~~~-~g~D~vid~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~  281 (362)
T 2c0c_A          208 GCDRPINYKT---EPVGTVLKQEYP-EGVDVVYESVGG-AMFDLAVDALATK-GRLIVIGFISGYQTPTGLSPVKAGTLP  281 (362)
T ss_dssp             TCSEEEETTT---SCHHHHHHHHCT-TCEEEEEECSCT-HHHHHHHHHEEEE-EEEEECCCGGGTTSSSCCCCCCCTTHH
T ss_pred             CCcEEEecCC---hhHHHHHHHhcC-CCCCEEEECCCH-HHHHHHHHHHhcC-CEEEEEeCCCCcCcccccccccccccH
Confidence            9999999877   778888887764 489999999998 5889999999998 9999999765311  1        222


Q ss_pred             hHhHhc-CcEEEEeecccc
Q 043260          311 FPAIAL-GRNLKGTIFGGI  328 (332)
Q Consensus       311 ~~~~~~-~~~i~g~~~~~~  328 (332)
                       ..++. ++++.|++.+.+
T Consensus       282 -~~~~~~~~~i~g~~~~~~  299 (362)
T 2c0c_A          282 -AKLLKKSASVQGFFLNHY  299 (362)
T ss_dssp             -HHHHHHTCEEEECCGGGC
T ss_pred             -HHHHhhcceEEEEEhhhh
Confidence             34444 999999886543

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-42  Score=323.32  Aligned_cols=262  Identities=20%  Similarity=0.230  Sum_probs=216.1

Q ss_pred             cceeeeEEEecCCC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCC
Q 043260           12 IYYAAAVVCWGEGE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        12 ~~~~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      |++|||+++++++.  .++++++|.|+|+++||||||.++|||++|++ +.|.++. ..+|.++|||++|+|++.  +++
T Consensus         1 m~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~   78 (328)
T 1xa0_A            1 MSAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHP   78 (328)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSS
T ss_pred             CCcceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCC
Confidence            45799999998873  48899999999999999999999999999999 8775432 467999999999999995  578


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      +|++||||++.+..                       .|...+                  |+|+||+.++++.++++|+
T Consensus        79 ~~~vGdrV~~~~~~-----------------------~g~~~~------------------G~~aey~~v~~~~~~~~P~  117 (328)
T 1xa0_A           79 RFREGDEVIATGYE-----------------------IGVTHF------------------GGYSEYARLHGEWLVPLPK  117 (328)
T ss_dssp             SCCTTCEEEEESTT-----------------------BTTTBC------------------CSSBSEEEECGGGCEECCT
T ss_pred             CCCCCCEEEEcccc-----------------------CCCCCC------------------ccceeEEEechHHeEECCC
Confidence            89999999864310                       022222                  4699999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHH--HhhCCCCCC-EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAW--KEFKVEKGS-SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT  243 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~--~~~~~~~g~-~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~  243 (332)
                      ++++++||++++++.|||.++.  +..++++|+ +|||+|+ |++|++++|+++.+|+ +|++++++++|+++++++|++
T Consensus       118 ~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~  196 (328)
T 1xa0_A          118 GLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAK  196 (328)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCS
T ss_pred             CCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCc
Confidence            9999999999998999998764  346789996 9999998 9999999999999999 899999999999999999999


Q ss_pred             eeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEE
Q 043260          244 DFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKG  322 (332)
Q Consensus       244 ~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g  322 (332)
                      +++++.+   .+ .+.+++++++ ++|+|||++|+ ..+..++++++++ |+++.+|...+...+++...++. ++++.|
T Consensus       197 ~~i~~~~---~~-~~~~~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g  269 (328)
T 1xa0_A          197 EVLARED---VM-AERIRPLDKQ-RWAAAVDPVGG-RTLATVLSRMRYG-GAVAVSGLTGGAEVPTTVHPFILRGVSLLG  269 (328)
T ss_dssp             EEEECC-------------CCSC-CEEEEEECSTT-TTHHHHHHTEEEE-EEEEECSCCSSSCCCCCSHHHHHTTCEEEE
T ss_pred             EEEecCC---cH-HHHHHHhcCC-cccEEEECCcH-HHHHHHHHhhccC-CEEEEEeecCCCCCCCchhhhhhcCceEEE
Confidence            9998865   32 3345555544 89999999999 4889999999998 99999998764445666666555 999999


Q ss_pred             ee
Q 043260          323 TI  324 (332)
Q Consensus       323 ~~  324 (332)
                      +.
T Consensus       270 ~~  271 (328)
T 1xa0_A          270 ID  271 (328)
T ss_dssp             CC
T ss_pred             Ee
Confidence            84

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=5.5e-43  Score=325.97  Aligned_cols=263  Identities=22%  Similarity=0.256  Sum_probs=218.7

Q ss_pred             ccceeeeEEEecCCC--CeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCC
Q 043260           11 KIYYAAAVVCWGEGE--PWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEV   86 (332)
Q Consensus        11 ~~~~~~a~~~~~~~~--~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v   86 (332)
                      ||++|||+++++++.  .++++++|.|+|++|||||||+++|||++|++ +.|.++. ..+|.++|||++|+|+++  ++
T Consensus         1 m~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v   78 (330)
T 1tt7_A            1 MSTLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--ND   78 (330)
T ss_dssp             -CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SS
T ss_pred             CCCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CC
Confidence            467899999998762  48999999999999999999999999999999 8776543 468999999999999996  46


Q ss_pred             CCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcC
Q 043260           87 KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD  166 (332)
Q Consensus        87 ~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP  166 (332)
                      ++|++||||++.+..                       .|...+                  |+|+||+.++++.++++|
T Consensus        79 ~~~~vGdrV~~~~~~-----------------------~g~~~~------------------G~~aey~~v~~~~~~~iP  117 (330)
T 1tt7_A           79 PRFAEGDEVIATSYE-----------------------LGVSRD------------------GGLSEYASVPGDWLVPLP  117 (330)
T ss_dssp             TTCCTTCEEEEESTT-----------------------BTTTBC------------------CSSBSSEEECGGGEEECC
T ss_pred             CCCCCCCEEEEcccc-----------------------cCCCCC------------------ccceeEEEecHHHeEECC
Confidence            889999999865310                       122222                  469999999999999999


Q ss_pred             CCCChhhhhhcccchhhhHHHHH--HhhCCCCCC-EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC
Q 043260          167 PSIDLSLAGFLSCGYSSGFGAAW--KEFKVEKGS-SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       167 ~~~~~~~aa~l~~~~~ta~~al~--~~~~~~~g~-~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      +++++++||++++++.|||.++.  +..++++|+ +|||+|+ |++|++++|+++.+|+ +|++++++++|+++++++|+
T Consensus       118 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa  196 (330)
T 1tt7_A          118 QNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGA  196 (330)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTC
T ss_pred             CCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC
Confidence            99999999999998999998764  346788996 9999998 9999999999999999 89999999999999999999


Q ss_pred             CeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEE
Q 043260          243 TDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLK  321 (332)
Q Consensus       243 ~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~  321 (332)
                      ++++++++   .+ .+.++++++ .++|+|||++|+ ..+.+++++++++ |+++.+|...+...+++...++. ++++.
T Consensus       197 ~~v~~~~~---~~-~~~~~~~~~-~~~d~vid~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~  269 (330)
T 1tt7_A          197 SEVISRED---VY-DGTLKALSK-QQWQGAVDPVGG-KQLASLLSKIQYG-GSVAVSGLTGGGEVPATVYPFILRGVSLL  269 (330)
T ss_dssp             SEEEEHHH---HC-SSCCCSSCC-CCEEEEEESCCT-HHHHHHHTTEEEE-EEEEECCCSSCSCEEECSHHHHTSCCEEE
T ss_pred             cEEEECCC---ch-HHHHHHhhc-CCccEEEECCcH-HHHHHHHHhhcCC-CEEEEEecCCCCccCcchHHHHhcCeEEE
Confidence            99987643   11 112333443 389999999999 5899999999998 99999998764445666666655 99999


Q ss_pred             Eee
Q 043260          322 GTI  324 (332)
Q Consensus       322 g~~  324 (332)
                      |+.
T Consensus       270 g~~  272 (330)
T 1tt7_A          270 GID  272 (330)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            984

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1.6e-41  Score=316.94  Aligned_cols=256  Identities=19%  Similarity=0.236  Sum_probs=223.1

Q ss_pred             ceeeeEEEec------CCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccc----eeEEEEE
Q 043260           13 YYAAAVVCWG------EGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHE----GVGMVES   81 (332)
Q Consensus        13 ~~~~a~~~~~------~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e----~~G~Vv~   81 (332)
                      ++||||+++.      ..+.++++++|.|+|++|||||||++++||++|+. +.+.. ...+|.++|||    ++|+|++
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~-~~~~p~~~G~e~g~~~~G~V~~   84 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDAR-SYIPPVGIGEVMRALGVGKVLV   84 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSC-CSSCCCCTTSBCCCEEEEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhccc-ccCCCCCCCcccCCceEEEEEe
Confidence            6799999985      22349999999999999999999999999999988 65532 23567788888    7999999


Q ss_pred             eCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCc
Q 043260           82 IGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANY  161 (332)
Q Consensus        82 vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~  161 (332)
                      .  ++++|++||||+..                                                  |+|+||+.++++.
T Consensus        85 ~--~v~~~~vGdrV~~~--------------------------------------------------G~~aey~~v~~~~  112 (336)
T 4b7c_A           85 S--KHPGFQAGDYVNGA--------------------------------------------------LGVQDYFIGEPKG  112 (336)
T ss_dssp             E--CSTTCCTTCEEEEE--------------------------------------------------CCSBSEEEECCTT
T ss_pred             c--CCCCCCCCCEEecc--------------------------------------------------CCceEEEEechHH
Confidence            4  58899999999832                                                  4599999999999


Q ss_pred             eEEcCCCCChhhh--hhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-
Q 043260          162 VVKVDPSIDLSLA--GFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-  237 (332)
Q Consensus       162 v~~lP~~~~~~~a--a~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-  237 (332)
                      ++++|+++++.++  |++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.+ 
T Consensus       113 ~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~  191 (336)
T 4b7c_A          113 FYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLV  191 (336)
T ss_dssp             CEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             eEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            9999999987776  7788999999999988899999999999998 9999999999999999 999999999999998 


Q ss_pred             HHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC------CcccCCh
Q 043260          238 EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE------AKVPLNF  311 (332)
Q Consensus       238 ~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~------~~~~~~~  311 (332)
                      +++|++.++++.+   .++.+.+.+.+++ ++|++||++|+ ..+..++++++++ |+++.+|....      ...+++.
T Consensus       192 ~~~g~~~~~~~~~---~~~~~~~~~~~~~-~~d~vi~~~g~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~  265 (336)
T 4b7c_A          192 EELGFDGAIDYKN---EDLAAGLKRECPK-GIDVFFDNVGG-EILDTVLTRIAFK-ARIVLCGAISQYNNKEAVRGPANY  265 (336)
T ss_dssp             HTTCCSEEEETTT---SCHHHHHHHHCTT-CEEEEEESSCH-HHHHHHHTTEEEE-EEEEECCCGGGGC------CCTTT
T ss_pred             HHcCCCEEEECCC---HHHHHHHHHhcCC-CceEEEECCCc-chHHHHHHHHhhC-CEEEEEeecccccCCcccccchhH
Confidence            8999999999987   8888899988854 89999999998 5899999999998 99999998662      1246666


Q ss_pred             HhHhc-CcEEEEeecccc
Q 043260          312 PAIAL-GRNLKGTIFGGI  328 (332)
Q Consensus       312 ~~~~~-~~~i~g~~~~~~  328 (332)
                      ..++. ++++.|+..+.+
T Consensus       266 ~~~~~~~~~i~g~~~~~~  283 (336)
T 4b7c_A          266 LSLLVNRARMEGMVVMDY  283 (336)
T ss_dssp             THHHHTTCEEEECCGGGG
T ss_pred             HHHHhCCcEEEEEEhhhh
Confidence            66666 999999988765

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=1.7e-41  Score=321.34  Aligned_cols=241  Identities=21%  Similarity=0.186  Sum_probs=209.0

Q ss_pred             cccceeeeEEEecCCCC--eEE-EEEecCCC-CCCeEEEEEeeeecCccccc-ccCCCC---------------CCCCCc
Q 043260           10 LKIYYAAAVVCWGEGEP--WKV-EEIQVEPP-KATEVRFKMLYASICHTDVL-SSKGFP---------------LPLFPR   69 (332)
Q Consensus        10 ~~~~~~~a~~~~~~~~~--l~~-~~~~~p~~-~~~eVlVkv~~~~i~~~D~~-~~g~~~---------------~~~~p~   69 (332)
                      +++++|||+++++++.+  +++ +++|.|+| ++|||||||.++|||++|++ +.|..+               ...+|.
T Consensus        17 ~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~   96 (375)
T 2vn8_A           17 NLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPL   96 (375)
T ss_dssp             -CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSB
T ss_pred             ccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCc
Confidence            45778999999988743  888 99999985 99999999999999999999 776421               123899


Q ss_pred             ccccceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccC
Q 043260           70 VLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCS  149 (332)
Q Consensus        70 v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G  149 (332)
                      ++|||++|+|+++|++|++|++||||+..+.                          ...                  .|
T Consensus        97 v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~--------------------------~~~------------------~G  132 (375)
T 2vn8_A           97 TLGRDVSGVVMECGLDVKYFKPGDEVWAAVP--------------------------PWK------------------QG  132 (375)
T ss_dssp             CCCCEEEEEEEEECTTCCSCCTTCEEEEECC--------------------------TTS------------------CC
T ss_pred             ccceeeeEEEEEeCCCCCCCCCCCEEEEecC--------------------------CCC------------------Cc
Confidence            9999999999999999999999999985431                          111                  24


Q ss_pred             CceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhC----CCCCCEEEEECC-ChHHHHHHHHHHHcCCCeE
Q 043260          150 TMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFK----VEKGSSVAVFGL-GAVGLGVMDRARIQGAAKI  224 (332)
Q Consensus       150 ~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~----~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~V  224 (332)
                      +|+||+.++++.++++|+++++++||++++++.|||+++.+.++    +++|++|||+|+ |++|++++|+++.+|+ +|
T Consensus       133 ~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~V  211 (375)
T 2vn8_A          133 TLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA-HV  211 (375)
T ss_dssp             SSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC-EE
T ss_pred             cceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC-EE
Confidence            69999999999999999999999999999899999999977788    899999999996 9999999999999998 89


Q ss_pred             EEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          225 IGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       225 i~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ++++ +++++++++++|++.++++.+   .++.+.+.+.   .++|+|||++|+. ..+..++++++++ |+++.+|...
T Consensus       212 i~~~-~~~~~~~~~~lGa~~v~~~~~---~~~~~~~~~~---~g~D~vid~~g~~~~~~~~~~~~l~~~-G~iv~~g~~~  283 (375)
T 2vn8_A          212 TAVC-SQDASELVRKLGADDVIDYKS---GSVEEQLKSL---KPFDFILDNVGGSTETWAPDFLKKWSG-ATYVTLVTPF  283 (375)
T ss_dssp             EEEE-CGGGHHHHHHTTCSEEEETTS---SCHHHHHHTS---CCBSEEEESSCTTHHHHGGGGBCSSSC-CEEEESCCSH
T ss_pred             EEEe-ChHHHHHHHHcCCCEEEECCc---hHHHHHHhhc---CCCCEEEECCCChhhhhHHHHHhhcCC-cEEEEeCCCc
Confidence            9988 678899999999999999887   6777766653   4799999999996 4568899999998 9999999754

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=7.6e-43  Score=331.16  Aligned_cols=261  Identities=15%  Similarity=0.150  Sum_probs=219.6

Q ss_pred             cceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC---------------------------
Q 043260           12 IYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP---------------------------   63 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~---------------------------   63 (332)
                      ..+|||++.......++++++|.|+|++|||||||++++||++|+. +.|.++                           
T Consensus         5 ~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~   84 (379)
T 3iup_A            5 ALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSM   84 (379)
T ss_dssp             EEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHH
T ss_pred             hhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccccccc
Confidence            5679999986554459999999999999999999999999999999 776421                           


Q ss_pred             --CCCCCcccccceeEEEEEeCCCC-CCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCccccccc
Q 043260           64 --LPLFPRVLGHEGVGMVESIGDEV-KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQ  140 (332)
Q Consensus        64 --~~~~p~v~G~e~~G~Vv~vG~~v-~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~  140 (332)
                        ...+|.++|||++|+|+++|++| ++|++||||+..+                                         
T Consensus        85 ~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~-----------------------------------------  123 (379)
T 3iup_A           85 AGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG-----------------------------------------  123 (379)
T ss_dssp             GGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC-----------------------------------------
T ss_pred             ccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC-----------------------------------------
Confidence              23578999999999999999999 8899999998432                                         


Q ss_pred             ceecccccCCceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEE--CCChHHHHHHHHHHH
Q 043260          141 KLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVF--GLGAVGLGVMDRARI  218 (332)
Q Consensus       141 ~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~--G~g~vG~~~~~la~~  218 (332)
                             .|+|+||+.++++.++++|+++++++||++++...|||+++ +... ++|++|||+  |+|++|++++|+|+.
T Consensus       124 -------~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag~G~vG~~a~q~a~~  194 (379)
T 3iup_A          124 -------GAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAAASNLGQMLNQICLK  194 (379)
T ss_dssp             -------SCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESSTTSHHHHHHHHHHHH
T ss_pred             -------CCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCCCCHHHHHHHHHHHH
Confidence                   24699999999999999999999999999999999999876 4455 899999999  459999999999999


Q ss_pred             cCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhc-----cC-
Q 043260          219 QGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATK-----LG-  292 (332)
Q Consensus       219 ~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~-----~~-  292 (332)
                      +|+ +|++++++++|+++++++|+++++++++   .++.+.+++++++.++|+|||++|++..+..++++++     ++ 
T Consensus       195 ~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~---~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G  270 (379)
T 3iup_A          195 DGI-KLVNIVRKQEQADLLKAQGAVHVCNAAS---PTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAR  270 (379)
T ss_dssp             HTC-CEEEEESSHHHHHHHHHTTCSCEEETTS---TTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCC
T ss_pred             CCC-EEEEEECCHHHHHHHHhCCCcEEEeCCC---hHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhcccc
Confidence            999 8999999999999999999999999988   8899999999988899999999998767788888885     33 


Q ss_pred             ---------CcEEEEEcCCCCCcccCChHhHh-cCcEEEEeecccc
Q 043260          293 ---------KGKVMAIGAANEAKVPLNFPAIA-LGRNLKGTIFGGI  328 (332)
Q Consensus       293 ---------~G~~v~~G~~~~~~~~~~~~~~~-~~~~i~g~~~~~~  328 (332)
                               +|+++.+|.......+++  .++ +++++.|++++.+
T Consensus       271 ~~~~~G~~~~g~iv~~G~~~~~~~~~~--~~~~~~~~i~g~~~~~~  314 (379)
T 3iup_A          271 EYSRYGSTTHKQVYLYGGLDTSPTEFN--RNFGMAWGMGGWLLFPF  314 (379)
T ss_dssp             SCCTTCCCSCEEEEECCCSEEEEEEEC--CCSCSCEEEEECCHHHH
T ss_pred             ceeecccccCceEEEecCCCCCccccc--cccccceEEEEEEeeee
Confidence                     145555555432223333  333 3899999877654

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=1.7e-40  Score=312.54  Aligned_cols=261  Identities=18%  Similarity=0.246  Sum_probs=220.8

Q ss_pred             ccccceeeeEEE-ecC---C----CCeEEEEEecCCC-CCCeEEEEEeeeecCccccc-ccC----CCC-CCCCCccccc
Q 043260            9 FLKIYYAAAVVC-WGE---G----EPWKVEEIQVEPP-KATEVRFKMLYASICHTDVL-SSK----GFP-LPLFPRVLGH   73 (332)
Q Consensus         9 ~~~~~~~~a~~~-~~~---~----~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~-~~g----~~~-~~~~p~v~G~   73 (332)
                      ..+|++|||+++ +.+   +    +.++++++|.|+| ++|||||||.++|||++|+. +.+    .++ ...+|.++||
T Consensus         3 ~~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~   82 (357)
T 2zb4_A            3 AAAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDG   82 (357)
T ss_dssp             ---CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEE
T ss_pred             CcccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccc
Confidence            356889999999 554   3    3499999999999 99999999999999999988 665    232 2467899999


Q ss_pred             ceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCcee
Q 043260           74 EGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTE  153 (332)
Q Consensus        74 e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~  153 (332)
                      |++|+|++  ++|++|++||||+...                                                 |+|+|
T Consensus        83 E~~G~V~~--~~v~~~~vGdrV~~~~-------------------------------------------------G~~ae  111 (357)
T 2zb4_A           83 GGIGIIEE--SKHTNLTKGDFVTSFY-------------------------------------------------WPWQT  111 (357)
T ss_dssp             EEEEEEEE--ECSTTCCTTCEEEEEE-------------------------------------------------EESBS
T ss_pred             cEEEEEEe--cCCCCCCCCCEEEecC-------------------------------------------------CCcEE
Confidence            99999999  8899999999998431                                                 35999


Q ss_pred             eEEecCCceEEcCCCC-----ChhhhhhcccchhhhHHHHHHhhCCCCC--CEEEEECC-ChHHHHHHHHHHHcCCCeEE
Q 043260          154 YMVVDANYVVKVDPSI-----DLSLAGFLSCGYSSGFGAAWKEFKVEKG--SSVAVFGL-GAVGLGVMDRARIQGAAKII  225 (332)
Q Consensus       154 ~~~v~~~~v~~lP~~~-----~~~~aa~l~~~~~ta~~al~~~~~~~~g--~~vlV~G~-g~vG~~~~~la~~~G~~~Vi  225 (332)
                      |++++++.++++|+++     +++ +|++++++.|||+++.+.+++++|  ++|||+|+ |++|++++|+++..|+++|+
T Consensus       112 y~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi  190 (357)
T 2zb4_A          112 KVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVV  190 (357)
T ss_dssp             EEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEE
T ss_pred             EEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEE
Confidence            9999999999999999     555 677888999999999888899999  99999998 99999999999999987899


Q ss_pred             EEcCCcchHHHHHH-cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          226 GIDKNPCRKDKGEA-FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       226 ~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ++++++++++.+++ +|++.++++.+   .++.+.+.+.+++ ++|++||++|. ..+..++++++++ |+++.+|....
T Consensus       191 ~~~~~~~~~~~~~~~~g~~~~~d~~~---~~~~~~~~~~~~~-~~d~vi~~~G~-~~~~~~~~~l~~~-G~iv~~G~~~~  264 (357)
T 2zb4_A          191 GICGTHEKCILLTSELGFDAAINYKK---DNVAEQLRESCPA-GVDVYFDNVGG-NISDTVISQMNEN-SHIILCGQISQ  264 (357)
T ss_dssp             EEESCHHHHHHHHHTSCCSEEEETTT---SCHHHHHHHHCTT-CEEEEEESCCH-HHHHHHHHTEEEE-EEEEECCCGGG
T ss_pred             EEeCCHHHHHHHHHHcCCceEEecCc---hHHHHHHHHhcCC-CCCEEEECCCH-HHHHHHHHHhccC-cEEEEECCccc
Confidence            99999999998886 99999999887   7888888888877 89999999997 6889999999998 99999998653


Q ss_pred             C--cccCCh-------HhHhc-CcEEEEeeccc
Q 043260          305 A--KVPLNF-------PAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       305 ~--~~~~~~-------~~~~~-~~~i~g~~~~~  327 (332)
                      .  .++++.       ..++. ++++.|+..+.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  297 (357)
T 2zb4_A          265 YNKDVPYPPPLSPAIEAIQKERNITRERFLVLN  297 (357)
T ss_dssp             TTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGG
T ss_pred             cccCccccccchhhhhhhhhcceeEEEEeehhh
Confidence            1  222221       34444 99999987654

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=5.3e-39  Score=295.58  Aligned_cols=241  Identities=19%  Similarity=0.236  Sum_probs=202.2

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||+++++++.+..+++.|.|+|+++||||||++++||++|++ +.|.++. ..+|.++|||++|+|+           |
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G   69 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G   69 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence            7999999998765677999999999999999999999999999 8876553 3689999999999998           9


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      |||+..                             ..+                  |+|+||+.++++.++++|++++++
T Consensus        70 drV~~~-----------------------------~~~------------------G~~aey~~v~~~~~~~iP~~~~~~  102 (302)
T 1iz0_A           70 RRYAAL-----------------------------VPQ------------------GGLAERVAVPKGALLPLPEGLSPE  102 (302)
T ss_dssp             EEEEEE-----------------------------CSS------------------CCSBSEEEEEGGGCEECCTTCCHH
T ss_pred             cEEEEe-----------------------------cCC------------------cceeeEEEEcHHHcEeCCCCCCHH
Confidence            999843                             222                  459999999999999999999999


Q ss_pred             hhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      +||++++++.|||+++.+.. +++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|++.++++.+ 
T Consensus       103 ~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~-  179 (302)
T 1iz0_A          103 EAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYAE-  179 (302)
T ss_dssp             HHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGGG-
T ss_pred             HHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEECCc-
Confidence            99999999999999997677 999999999998 9999999999999999 9999999999999999999999987642 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                       ..++.+.   +   .++|+||| +|+ ..+..++++++++ |+++.+|........+++..++. ++++.|+..+
T Consensus       180 -~~~~~~~---~---~~~d~vid-~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~  245 (302)
T 1iz0_A          180 -VPERAKA---W---GGLDLVLE-VRG-KEVEESLGLLAHG-GRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLT  245 (302)
T ss_dssp             -HHHHHHH---T---TSEEEEEE-CSC-TTHHHHHTTEEEE-EEEEEC-------CCCCTTHHHHTTCEEEECCHH
T ss_pred             -chhHHHH---h---cCceEEEE-CCH-HHHHHHHHhhccC-CEEEEEeCCCCCCCCcCHHHHHhCCCeEEEEecc
Confidence             0123222   2   47999999 998 5889999999998 99999998764333566655555 9999998764

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=1.3e-37  Score=290.05  Aligned_cols=258  Identities=21%  Similarity=0.210  Sum_probs=214.4

Q ss_pred             cccceeeeEEEecC--C----CCeEEEEEecCCCCCCeEEEEEeeeecCcccccccCCCCCCCCCcccccceeEEEEEeC
Q 043260           10 LKIYYAAAVVCWGE--G----EPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIG   83 (332)
Q Consensus        10 ~~~~~~~a~~~~~~--~----~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~g~~~~~~~p~v~G~e~~G~Vv~vG   83 (332)
                      ..+++||++++++.  +    +.++++++|.|+|++|||||||+++|||+.|..+..   ...+|.++|||++|+|++. 
T Consensus         3 ~~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~~~---~~~~p~~~g~e~~G~Vv~~-   78 (333)
T 1v3u_A            3 EFMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASK---RLKEGAVMMGQQVARVVES-   78 (333)
T ss_dssp             -CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHTT---TCCTTSBCCCCEEEEEEEE-
T ss_pred             cccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccccC---cCCCCcccccceEEEEEec-
Confidence            34788999999874  2    348999999999999999999999999998874211   2356889999999999995 


Q ss_pred             CCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceE
Q 043260           84 DEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVV  163 (332)
Q Consensus        84 ~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~  163 (332)
                       ++++|++||||+..                                                  |+|+||+.++++.++
T Consensus        79 -~v~~~~vGdrV~~~--------------------------------------------------g~~aey~~v~~~~~~  107 (333)
T 1v3u_A           79 -KNSAFPAGSIVLAQ--------------------------------------------------SGWTTHFISDGKGLE  107 (333)
T ss_dssp             -SCTTSCTTCEEEEC--------------------------------------------------CCSBSEEEESSTTEE
T ss_pred             -CCCCCCCCCEEEec--------------------------------------------------CceEEEEEechHHeE
Confidence             67889999999832                                                  359999999999999


Q ss_pred             EcCCC----CChhh-hhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 043260          164 KVDPS----IDLSL-AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG  237 (332)
Q Consensus       164 ~lP~~----~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~  237 (332)
                      ++|++    +++++ +|++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++.+
T Consensus       108 ~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~  186 (333)
T 1v3u_A          108 KLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYL  186 (333)
T ss_dssp             ECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             EcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            99997    88887 48888999999999978889999999999998 9999999999999999 999999999999999


Q ss_pred             HHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-C----cc-cCCh
Q 043260          238 EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-A----KV-PLNF  311 (332)
Q Consensus       238 ~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~----~~-~~~~  311 (332)
                      +++|++.+++..+  .+++.+.+.+.+++ ++|++||++|. ..+..++++++++ |+++.+|.... .    .. .++.
T Consensus       187 ~~~g~~~~~d~~~--~~~~~~~~~~~~~~-~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~  261 (333)
T 1v3u_A          187 KQIGFDAAFNYKT--VNSLEEALKKASPD-GYDCYFDNVGG-EFLNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSP  261 (333)
T ss_dssp             HHTTCSEEEETTS--CSCHHHHHHHHCTT-CEEEEEESSCH-HHHHHHHTTEEEE-EEEEECCCCC-------CCBCCCH
T ss_pred             HhcCCcEEEecCC--HHHHHHHHHHHhCC-CCeEEEECCCh-HHHHHHHHHHhcC-CEEEEEeccccccCCCCCCCCcCH
Confidence            9999998887753  24677778777764 89999999998 4789999999998 99999998653 1    11 2355


Q ss_pred             HhHhc-CcEEEEeecccc
Q 043260          312 PAIAL-GRNLKGTIFGGI  328 (332)
Q Consensus       312 ~~~~~-~~~i~g~~~~~~  328 (332)
                      ..++. ++++.|+..+.+
T Consensus       262 ~~~~~~~~~i~g~~~~~~  279 (333)
T 1v3u_A          262 ESIIYKQLRIEGFIVYRW  279 (333)
T ss_dssp             HHHHHTTCEEEECCGGGC
T ss_pred             HHHhhcCceEEEEehhhc
Confidence            55655 899999877653

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=4e-37  Score=288.01  Aligned_cols=260  Identities=18%  Similarity=0.226  Sum_probs=212.5

Q ss_pred             ccceeeeEEEecC-----CC-CeEEE--EEecCC-CCCCeEEEEEeeeecCcccccccCCCCC----CCCCcccccceeE
Q 043260           11 KIYYAAAVVCWGE-----GE-PWKVE--EIQVEP-PKATEVRFKMLYASICHTDVLSSKGFPL----PLFPRVLGHEGVG   77 (332)
Q Consensus        11 ~~~~~~a~~~~~~-----~~-~l~~~--~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~g~~~~----~~~p~v~G~e~~G   77 (332)
                      |+++||++++...     +. .++++  +++.|+ |++|||||||.++++|+.|....|.+..    ..+|.++|||++|
T Consensus         1 m~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~~~~g~~~~~~~~~~~p~v~G~e~~G   80 (345)
T 2j3h_A            1 MTATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPGQPIQG   80 (345)
T ss_dssp             CEEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHHHHHBC---------CCCCTTSBCEE
T ss_pred             CCccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHHhhcccCCCCccccCCCcCCCCeeec
Confidence            3467888877643     32 38888  889997 8999999999999988877544444321    2468999999999


Q ss_pred             EEEE--eCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeE
Q 043260           78 MVES--IGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYM  155 (332)
Q Consensus        78 ~Vv~--vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~  155 (332)
                      ++++  +|+++++|++||||+..                                                  |+|+||+
T Consensus        81 ~~~~GvV~~~v~~~~vGdrV~~~--------------------------------------------------g~~aey~  110 (345)
T 2j3h_A           81 YGVSRIIESGHPDYKKGDLLWGI--------------------------------------------------VAWEEYS  110 (345)
T ss_dssp             EEEEEEEEECSTTCCTTCEEEEE--------------------------------------------------EESBSEE
T ss_pred             ceEEEEEecCCCCCCCCCEEEee--------------------------------------------------cCceeEE
Confidence            9999  99999999999999832                                                  3599999


Q ss_pred             EecCCc--eEEcCC---CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          156 VVDANY--VVKVDP---SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       156 ~v~~~~--v~~lP~---~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      .++++.  ++++|+   +++++ +|++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++
T Consensus       111 ~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~  188 (345)
T 2j3h_A          111 VITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAG  188 (345)
T ss_dssp             EECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             EecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            998876  999996   35555 67788899999999977889999999999998 9999999999999999 9999999


Q ss_pred             CcchHHHHH-HcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCC---
Q 043260          230 NPCRKDKGE-AFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEA---  305 (332)
Q Consensus       230 ~~~~~~~~~-~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~---  305 (332)
                      ++++++.++ ++|++.++++.+  .+++.+.+++.++ .++|+|||++|+ ..+..++++++++ |+++.+|.....   
T Consensus       189 ~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~-~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~  263 (345)
T 2j3h_A          189 SKEKVDLLKTKFGFDDAFNYKE--ESDLTAALKRCFP-NGIDIYFENVGG-KMLDAVLVNMNMH-GRIAVCGMISQYNLE  263 (345)
T ss_dssp             SHHHHHHHHHTSCCSEEEETTS--CSCSHHHHHHHCT-TCEEEEEESSCH-HHHHHHHTTEEEE-EEEEECCCGGGTTCS
T ss_pred             CHHHHHHHHHHcCCceEEecCC--HHHHHHHHHHHhC-CCCcEEEECCCH-HHHHHHHHHHhcC-CEEEEEccccccccC
Confidence            999999998 799999988765  1356677777775 489999999998 5889999999998 999999976531   


Q ss_pred             --cccCChHhHhc-CcEEEEeeccc
Q 043260          306 --KVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       306 --~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                        ...++...++. ++++.|+..+.
T Consensus       264 ~~~~~~~~~~~~~~~~~i~g~~~~~  288 (345)
T 2j3h_A          264 NQEGVHNLSNIIYKRNRIQGFVVSD  288 (345)
T ss_dssp             SCCCBSCTTHHHHHTCEEEECCGGG
T ss_pred             CccccccHHHHhhhceeeceeeehh
Confidence              34566666666 99999987654

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=4e-38  Score=323.29  Aligned_cols=250  Identities=20%  Similarity=0.252  Sum_probs=211.5

Q ss_pred             eeEEEecCCC--CeEEEEEec--CCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           16 AAVVCWGEGE--PWKVEEIQV--EPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        16 ~a~~~~~~~~--~l~~~~~~~--p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      ..+.+..++.  .+++.+.+.  |+|++|||+|||+++|||++|+. +.|.++   .|.++|||++|+|+++|++|++|+
T Consensus       211 ~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~---~~~~lG~E~aG~V~~vG~~V~~~~  287 (795)
T 3slk_A          211 WRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASLGSEGAGVVVETGPGVTGLA  287 (795)
T ss_dssp             CCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS---SCCCSCCCEEEEEEEECSSCCSSC
T ss_pred             EEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC---CCccccceeEEEEEEeCCCCCcCC
Confidence            3455555553  377877764  56899999999999999999999 888654   456799999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||||+..                                                ..|+|+||++++++.++++|++++
T Consensus       288 vGDrV~~~------------------------------------------------~~G~~ae~~~v~~~~~~~iP~~ls  319 (795)
T 3slk_A          288 PGDRVMGM------------------------------------------------IPKAFGPLAVADHRMVTRIPAGWS  319 (795)
T ss_dssp             TTCEEEEC------------------------------------------------CSSCSSSEEEEETTSEEECCTTCC
T ss_pred             CCCEEEEE------------------------------------------------ecCCCcCEEEeehHHEEECCCCCC
Confidence            99999832                                                124699999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++ |++.++ +|++++++++
T Consensus       320 ~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v~~~~  396 (795)
T 3slk_A          320 FARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHLASSR  396 (795)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGEECSS
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhheeecC
Confidence            99999999999999999988899999999999997 9999999999999999 899998765 555555 9999999998


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhcCcEEEEeec
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIF  325 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~~~~i~g~~~  325 (332)
                      +   .++.+.+++.++++|+|+|||++++ +.+..++++++++ |+++.+|.... ..+........++++.++.+
T Consensus       397 ~---~~~~~~i~~~t~g~GvDvVld~~gg-~~~~~~l~~l~~~-Gr~v~iG~~~~-~~~~~~~~~~~~~~~~~~~l  466 (795)
T 3slk_A          397 T---CDFEQQFLGATGGRGVDVVLNSLAG-EFADASLRMLPRG-GRFLELGKTDV-RDPVEVADAHPGVSYQAFDT  466 (795)
T ss_dssp             S---STHHHHHHHHSCSSCCSEEEECCCT-TTTHHHHTSCTTC-EEEEECCSTTC-CCHHHHHHHSSSEEEEECCG
T ss_pred             C---hhHHHHHHHHcCCCCeEEEEECCCc-HHHHHHHHHhcCC-CEEEEeccccc-cCcccccccCCCCEEEEeec
Confidence            8   8999999999999999999999998 5889999999998 99999997653 11112222234677766644

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.96  E-value=1.2e-28  Score=277.06  Aligned_cols=238  Identities=17%  Similarity=0.223  Sum_probs=199.0

Q ss_pred             eEEEEEecCC-CC--CCeEEEEEeeeecCccccc-ccCCCCCC-------CCCcccccceeEEEEEeCCCCCCCCCCCEE
Q 043260           27 WKVEEIQVEP-PK--ATEVRFKMLYASICHTDVL-SSKGFPLP-------LFPRVLGHEGVGMVESIGDEVKELKEGDIV   95 (332)
Q Consensus        27 l~~~~~~~p~-~~--~~eVlVkv~~~~i~~~D~~-~~g~~~~~-------~~p~v~G~e~~G~Vv~vG~~v~~~~vGdrV   95 (332)
                      +.+.+.+... +.  ++||+|||.++|+|+.|+. ..|.++..       ..|.++|+|++|+|          ++||||
T Consensus      1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V----------~vGdrV 1613 (2512)
T 2vz8_A         1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRD----------ASGRRV 1613 (2512)
T ss_dssp             EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEE----------TTSCCE
T ss_pred             eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEE----------ccCCEE
Confidence            5555544333 22  7899999999999999999 77765421       34678999999987          379999


Q ss_pred             EeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChhhhh
Q 043260           96 IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAG  175 (332)
Q Consensus        96 ~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~~aa  175 (332)
                      +                             |+..+|                  +|+||+.++++.++++|+++++++||
T Consensus      1614 ~-----------------------------g~~~~G------------------~~Aeyv~vp~~~v~~iPd~ls~~eAA 1646 (2512)
T 2vz8_A         1614 M-----------------------------GMVPAE------------------GLATSVLLLQHATWEVPSTWTLEEAA 1646 (2512)
T ss_dssp             E-----------------------------EECSSC------------------CSBSEEECCGGGEEECCTTSCHHHHT
T ss_pred             E-----------------------------EeecCC------------------ceeeEEEcccceEEEeCCCCCHHHHH
Confidence            8                             443333                  59999999999999999999999999


Q ss_pred             hcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCeeeCCCC
Q 043260          176 FLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTDFINPDD  250 (332)
Q Consensus       176 ~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~  250 (332)
                      ++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++.+++|++.+++    +|+++++++++
T Consensus      1647 ~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~ 1725 (2512)
T 2vz8_A         1647 SVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANSRD 1725 (2512)
T ss_dssp             TSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEESSS
T ss_pred             HhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecCCC
Confidence            999999999999988889999999999987 9999999999999999 99999999999998886    78999999987


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeeccc
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIFGG  327 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~  327 (332)
                         .++.+.+++.++++|+|+|||++++ +.+..++++++++ |+++.+|.... ....+....+.+++++.|+....
T Consensus      1726 ---~~~~~~i~~~t~g~GvDvVld~~g~-~~l~~~l~~L~~~-Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 1798 (2512)
T 2vz8_A         1726 ---TSFEQHVLRHTAGKGVDLVLNSLAE-EKLQASVRCLAQH-GRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDS 1798 (2512)
T ss_dssp             ---SHHHHHHHHTTTSCCEEEEEECCCH-HHHHHHHTTEEEE-EEEEECCCHHHHTTCEEEGGGGGGCCEEEECCGGG
T ss_pred             ---HHHHHHHHHhcCCCCceEEEECCCc-hHHHHHHHhcCCC-cEEEEeecccccccCcccccccccCCcEEEeeHHH
Confidence               8899999999998899999999985 6899999999998 99999996542 21222233334499999987654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.86  E-value=2.6e-21  Score=166.44  Aligned_cols=159  Identities=18%  Similarity=0.300  Sum_probs=125.1

Q ss_pred             CceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 043260          160 NYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE  238 (332)
Q Consensus       160 ~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~  238 (332)
                      +.++++|+++++++||++++++.|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|+++++++++++.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            5688999999999999999999999999877789999999999996 9999999999999998 9999999999999999


Q ss_pred             HcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcC
Q 043260          239 AFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALG  317 (332)
Q Consensus       239 ~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~  317 (332)
                      ++|++.+++..+   .+..+.+.+.+.+.++|++||++|. ..+..++++++++ |+++.+|.... ...+++...+.++
T Consensus        81 ~~g~~~~~d~~~---~~~~~~~~~~~~~~~~D~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~  155 (198)
T 1pqw_A           81 RLGVEYVGDSRS---VDFADEILELTDGYGVDVVLNSLAG-EAIQRGVQILAPG-GRFIELGKKDVYADASLGLAALAKS  155 (198)
T ss_dssp             TTCCSEEEETTC---STHHHHHHHHTTTCCEEEEEECCCT-HHHHHHHHTEEEE-EEEEECSCGGGTTTCEEEGGGGTTT
T ss_pred             HcCCCEEeeCCc---HHHHHHHHHHhCCCCCeEEEECCch-HHHHHHHHHhccC-CEEEEEcCCCCcCcCcCChhHhcCC
Confidence            999998888876   6777788887766689999999986 5889999999998 99999998653 2233444333348


Q ss_pred             cEEEEee
Q 043260          318 RNLKGTI  324 (332)
Q Consensus       318 ~~i~g~~  324 (332)
                      +++.++.
T Consensus       156 ~~~~~~~  162 (198)
T 1pqw_A          156 ASFSVVD  162 (198)
T ss_dssp             CEEEECC
T ss_pred             cEEEEEe
Confidence            8888753

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.35  E-value=1.2e-12  Score=115.49  Aligned_cols=168  Identities=14%  Similarity=0.109  Sum_probs=112.4

Q ss_pred             CCCCCEEEeec-------ccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCc
Q 043260           89 LKEGDIVIPTF-------IGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANY  161 (332)
Q Consensus        89 ~~vGdrV~~~~-------~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~  161 (332)
                      +++||+|++.+       ...||.|.+|+.|..++|+..-..     .                   |...+      ..
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~~-----~-------------------G~~~~------~~   53 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKP-----E-------------------GVKIN------GF   53 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTCC-----T-------------------TEEET------TE
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCCC-----C-------------------CCEEE------EE
Confidence            89999999998       788899999999999999764211     0                   11212      23


Q ss_pred             eEEcCCCCChhhhhh-----cccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHH
Q 043260          162 VVKVDPSIDLSLAGF-----LSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDK  236 (332)
Q Consensus       162 v~~lP~~~~~~~aa~-----l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~  236 (332)
                      +.+.|+.....+.+.     +..+. .+.+ +....++.++++||.+|+| .|..+..+++. +. +|+++|.+++.++.
T Consensus        54 ~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~~  128 (248)
T 2yvl_A           54 EVYRPTLEEIILLGFERKTQIIYPK-DSFY-IALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYKT  128 (248)
T ss_dssp             EEECCCHHHHHHHTSCCSSCCCCHH-HHHH-HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHHH
T ss_pred             EEeCCCHHHHHHhcCcCCCCcccch-hHHH-HHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHHH
Confidence            333333222221111     11122 2223 3466788999999999998 59999999988 66 99999999998887


Q ss_pred             HHHc----CC-C--eeeCCCCCCCchHHHHHHHhc-CCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCC
Q 043260          237 GEAF----GM-T--DFINPDDEPNKSISELVKEMT-HGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       237 ~~~l----ga-~--~v~~~~~~~~~~~~~~~~~~~-~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +++.    +. +  .++..+.          .+.. ...+||+|+...+.+ ..+..+.+.|+++ |++++.-..
T Consensus       129 a~~~~~~~~~~~~~~~~~~d~----------~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  192 (248)
T 2yvl_A          129 AQKNLKKFNLGKNVKFFNVDF----------KDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEG-APVGFLLPT  192 (248)
T ss_dssp             HHHHHHHTTCCTTEEEECSCT----------TTSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTT-CEEEEEESS
T ss_pred             HHHHHHHcCCCCcEEEEEcCh----------hhcccCCCcccEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeCC
Confidence            7653    43 1  2222211          1122 334799999988876 6789999999998 999887754

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.05  E-value=2.7e-12  Score=122.13  Aligned_cols=183  Identities=13%  Similarity=0.099  Sum_probs=130.2

Q ss_pred             cccccceeEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceeccccc
Q 043260           69 RVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTC  148 (332)
Q Consensus        69 ~v~G~e~~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~  148 (332)
                      ...|++.++.|..+|++++++.+|+++.+....                       .++.               .....
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk-----------------------~~~~---------------~~~~~  116 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVK-----------------------KAYD---------------RAARL  116 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHH-----------------------HHHH---------------HHHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHH-----------------------HHHH---------------HHHHc
Confidence            457999999999999999999999987421100                       0110               01112


Q ss_pred             CCceeeEEecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhh---CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEE
Q 043260          149 STMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF---KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKII  225 (332)
Q Consensus       149 G~~a~~~~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~---~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi  225 (332)
                      |++++|+..+...++++|+.++.+.++.. .+.+++|+++....   .-.+|++|+|+|+|.+|.++++.++.+|+++|+
T Consensus       117 G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~  195 (404)
T 1gpj_A          117 GTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVL  195 (404)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEE
T ss_pred             CCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEE
Confidence            45788887777888999999888776653 47778888763322   125899999999999999999999999987999


Q ss_pred             EEcCCcchH-HHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHH--HHHHH--h--ccCCcEEEE
Q 043260          226 GIDKNPCRK-DKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLIS--EALEA--T--KLGKGKVMA  298 (332)
Q Consensus       226 ~~~~~~~~~-~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~--~~~~~--l--~~~~G~~v~  298 (332)
                      +++++.++. ++++++|++ +++.     .++.+.+      .++|+||++++.+..+.  ..++.  +  +++ +.+++
T Consensus       196 v~~r~~~ra~~la~~~g~~-~~~~-----~~l~~~l------~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~-~~~v~  262 (404)
T 1gpj_A          196 VANRTYERAVELARDLGGE-AVRF-----DELVDHL------ARSDVVVSATAAPHPVIHVDDVREALRKRDRR-SPILI  262 (404)
T ss_dssp             EECSSHHHHHHHHHHHTCE-ECCG-----GGHHHHH------HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSC-CCEEE
T ss_pred             EEeCCHHHHHHHHHHcCCc-eecH-----HhHHHHh------cCCCEEEEccCCCCceecHHHHHHHHHhccCC-CCEEE
Confidence            999999886 678889976 3333     3333333      26899999998754332  44555  3  455 77777


Q ss_pred             EcCCC
Q 043260          299 IGAAN  303 (332)
Q Consensus       299 ~G~~~  303 (332)
                      ++...
T Consensus       263 vdia~  267 (404)
T 1gpj_A          263 IDIAN  267 (404)
T ss_dssp             EECCS
T ss_pred             EEccC
Confidence            76543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.84  E-value=4.6e-09  Score=98.25  Aligned_cols=116  Identities=18%  Similarity=0.172  Sum_probs=87.5

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe--eeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD--FINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~--v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      +++|+|+|+|++|++++++++.+|+ +|++++++++|++.+++++++.  +++...   .++.+.+.      ++|+||+
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~DvVI~  236 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETAVA------EADLLIG  236 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHHHH------TCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeCCH---HHHHHHHc------CCCEEEE
Confidence            4899999999999999999999999 9999999999999988877654  343332   33433332      6999999


Q ss_pred             cCCChHH------HHHHHHHhccCCcEEEEEcCCCCC------cccCChHhHhc-CcEEEEe
Q 043260          275 CTGVASL------ISEALEATKLGKGKVMAIGAANEA------KVPLNFPAIAL-GRNLKGT  323 (332)
Q Consensus       275 ~~g~~~~------~~~~~~~l~~~~G~~v~~G~~~~~------~~~~~~~~~~~-~~~i~g~  323 (332)
                      +++.+..      ....++.++++ |+++.++...+.      ..+++...+.. ++++.|+
T Consensus       237 ~~~~~~~~~~~li~~~~~~~~~~g-~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~  297 (361)
T 1pjc_A          237 AVLVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGV  297 (361)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECC
T ss_pred             CCCcCCCCCCeecCHHHHhhCCCC-CEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEe
Confidence            9987542      56788899998 999999976532      33455444444 7777764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.66  E-value=4.4e-08  Score=92.34  Aligned_cols=126  Identities=22%  Similarity=0.325  Sum_probs=87.5

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee-eCCCC------------CC----CchHHH
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF-INPDD------------EP----NKSISE  258 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~------------~~----~~~~~~  258 (332)
                      ++++|+|+|+|.+|++++++++.+|+ +|+++++++++++.++++|++.+ ++..+            ..    .....+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            68999999999999999999999999 89999999999998989998765 22211            00    000122


Q ss_pred             HHHHhcCCCCccEEEEcC---CChH--HH-HHHHHHhccCCcEEEEEcCCCCCccc--CChHhHhc-CcEEEEeec
Q 043260          259 LVKEMTHGTGVDYGFECT---GVAS--LI-SEALEATKLGKGKVMAIGAANEAKVP--LNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       259 ~~~~~~~~~g~d~vid~~---g~~~--~~-~~~~~~l~~~~G~~v~~G~~~~~~~~--~~~~~~~~-~~~i~g~~~  325 (332)
                      .+.+...  ++|+||+++   |.+.  .+ .+.++.++++ ++++.++...+....  ++...+.. ++++.|+..
T Consensus       250 ~l~~~~~--~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g-~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~  322 (384)
T 1l7d_A          250 AVLKELV--KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTN  322 (384)
T ss_dssp             HHHHHHT--TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSS
T ss_pred             HHHHHhC--CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-CEEEEEecCCCCCeecccCCcEEEECCEEEEEeCC
Confidence            2444443  599999999   5322  23 6788999998 999999965332222  22223333 888888754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.64  E-value=6.4e-08  Score=90.98  Aligned_cols=118  Identities=18%  Similarity=0.164  Sum_probs=84.4

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      +|++|+|+|+|.+|+++++.++.+|+ +|+++++++++++.+++ +|++...+...  ..++.+.+.      ++|+||+
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~~--~~~l~~~l~------~aDvVi~  237 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSS--AYELEGAVK------RADLVIG  237 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEECC--HHHHHHHHH------HCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccCC--HHHHHHHHc------CCCEEEE
Confidence            57899999999999999999999999 99999999999888776 77763222211  133333331      5899999


Q ss_pred             cCCChHH------HHHHHHHhccCCcEEEEEcCCCC------CcccCChHhHhc-CcEEEEe
Q 043260          275 CTGVASL------ISEALEATKLGKGKVMAIGAANE------AKVPLNFPAIAL-GRNLKGT  323 (332)
Q Consensus       275 ~~g~~~~------~~~~~~~l~~~~G~~v~~G~~~~------~~~~~~~~~~~~-~~~i~g~  323 (332)
                      +++.+..      ....++.++++ |+++.++...+      .+.+++...+.. ++++.++
T Consensus       238 ~~~~p~~~t~~li~~~~l~~mk~g-~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~  298 (377)
T 2vhw_A          238 AVLVPGAKAPKLVSNSLVAHMKPG-AVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCV  298 (377)
T ss_dssp             CCCCTTSCCCCCBCHHHHTTSCTT-CEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECB
T ss_pred             CCCcCCCCCcceecHHHHhcCCCC-cEEEEEecCCCCccccccCCCCCCCEEEECCEEEEec
Confidence            9986543      57888999998 99999996442      233344333333 6665543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.64  E-value=1.4e-07  Score=91.19  Aligned_cols=116  Identities=20%  Similarity=0.267  Sum_probs=90.8

Q ss_pred             hhhhHHHHHHhhC-CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHH
Q 043260          181 YSSGFGAAWKEFK-VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISEL  259 (332)
Q Consensus       181 ~~ta~~al~~~~~-~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~  259 (332)
                      ..++++++.+... ..+|++|+|+|.|.+|..+++.++.+|+ +|+++++++++.+.++++|++ +++        +.+.
T Consensus       257 ~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~~--------l~e~  326 (494)
T 3ce6_A          257 RHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VVT--------VEEA  326 (494)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECC--------HHHH
T ss_pred             hhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Eec--------HHHH
Confidence            3456666533222 6899999999999999999999999999 999999999998889999985 321        2121


Q ss_pred             HHHhcCCCCccEEEEcCCChHHHH-HHHHHhccCCcEEEEEcCCCCCcccCChHhHhc
Q 043260          260 VKEMTHGTGVDYGFECTGVASLIS-EALEATKLGKGKVMAIGAANEAKVPLNFPAIAL  316 (332)
Q Consensus       260 ~~~~~~~~g~d~vid~~g~~~~~~-~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~  316 (332)
                      +      .++|+|++++++...+. +.++.++++ |+++.+|...   .+++...+..
T Consensus       327 l------~~aDvVi~atgt~~~i~~~~l~~mk~g-gilvnvG~~~---~eId~~aL~~  374 (494)
T 3ce6_A          327 I------GDADIVVTATGNKDIIMLEHIKAMKDH-AILGNIGHFD---NEIDMAGLER  374 (494)
T ss_dssp             G------GGCSEEEECSSSSCSBCHHHHHHSCTT-CEEEECSSSG---GGBCHHHHHH
T ss_pred             H------hCCCEEEECCCCHHHHHHHHHHhcCCC-cEEEEeCCCC---CccCHHHHHH
Confidence            1      26899999999876665 889999998 9999999754   3567666655

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.61  E-value=1.1e-07  Score=89.07  Aligned_cols=118  Identities=20%  Similarity=0.204  Sum_probs=77.8

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+++ +|++...+..+  ..++.+.+.      ++|+||+
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~~~------~~DvVi~  235 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTAT--EANIKKSVQ------HADLLIG  235 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEECC--HHHHHHHHH------HCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEecCC--HHHHHHHHh------CCCEEEE
Confidence            46899999999999999999999999 99999999999887765 77763232222  133333331      6899999


Q ss_pred             cCCChHH------HHHHHHHhccCCcEEEEEcCCCCC------cccCChHhHhc-CcEEEEe
Q 043260          275 CTGVASL------ISEALEATKLGKGKVMAIGAANEA------KVPLNFPAIAL-GRNLKGT  323 (332)
Q Consensus       275 ~~g~~~~------~~~~~~~l~~~~G~~v~~G~~~~~------~~~~~~~~~~~-~~~i~g~  323 (332)
                      +++.+..      ....++.++++ |+++.++...+.      +.+++...+.. ++++.|+
T Consensus       236 ~~g~~~~~~~~li~~~~l~~mk~g-g~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v  296 (369)
T 2eez_A          236 AVLVPGAKAPKLVTRDMLSLMKEG-AVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGV  296 (369)
T ss_dssp             CCC-------CCSCHHHHTTSCTT-CEEEECC-------------------CEETTEEEECC
T ss_pred             CCCCCccccchhHHHHHHHhhcCC-CEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEee
Confidence            9997532      56888999998 999999976531      22333333333 6776664

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.55  E-value=1.6e-07  Score=88.94  Aligned_cols=126  Identities=21%  Similarity=0.300  Sum_probs=86.8

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee-CCCC--C--------CCchH----HHHH
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDD--E--------PNKSI----SELV  260 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~--~--------~~~~~----~~~~  260 (332)
                      ++++|+|+|+|.+|++++++++.+|+ +|++++++.++++.++++|++.+. +..+  .        ...++    .+.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            58899999999999999999999999 999999999999989999987542 1100  0        00111    1123


Q ss_pred             HHhcCCCCccEEEEcCCCh-----HHH-HHHHHHhccCCcEEEEEcCCCCCcccCChH-h--Hhc-CcEEEEeec
Q 043260          261 KEMTHGTGVDYGFECTGVA-----SLI-SEALEATKLGKGKVMAIGAANEAKVPLNFP-A--IAL-GRNLKGTIF  325 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~~-----~~~-~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~-~--~~~-~~~i~g~~~  325 (332)
                      .+...  ++|+||++++.+     ..+ .+.++.++++ ++++.++...+...+++.. .  +.. ++++.|+..
T Consensus       250 ~e~~~--~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g-~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~~  321 (401)
T 1x13_A          250 AAQAK--EVDIIVTTALIPGKPAPKLITREMVDSMKAG-SVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTD  321 (401)
T ss_dssp             HHHHH--HCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCSC
T ss_pred             HHHhC--CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-cEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeCC
Confidence            34332  589999995332     223 5788999998 9999999753323333321 1  333 889988653

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.34  E-value=4e-07  Score=80.97  Aligned_cols=95  Identities=17%  Similarity=0.162  Sum_probs=70.3

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHHcCCC-eeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEAFGMT-DFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      .++++||.+|+|. |..+..+++.. |. +|+++|.+++.++.+++.+.. .++..+.   .++     ... ...||+|
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~-----~~~-~~~fD~v  152 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRL-----PFS-DTSMDAI  152 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT---TSC-----SBC-TTCEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEEcch---hhC-----CCC-CCceeEE
Confidence            6789999999988 98899999886 56 999999999999988877643 2322221   111     012 2379999


Q ss_pred             EEcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          273 FECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       273 id~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +.... ...+..+.+.|+++ |++++....
T Consensus       153 ~~~~~-~~~l~~~~~~L~pg-G~l~~~~~~  180 (269)
T 1p91_A          153 IRIYA-PCKAEELARVVKPG-GWVITATPG  180 (269)
T ss_dssp             EEESC-CCCHHHHHHHEEEE-EEEEEEEEC
T ss_pred             EEeCC-hhhHHHHHHhcCCC-cEEEEEEcC
Confidence            96544 45789999999998 998887543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.34  E-value=3e-06  Score=75.79  Aligned_cols=103  Identities=23%  Similarity=0.242  Sum_probs=74.8

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHHc----CC-C--eeeCCCCCCCchHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEAF----GM-T--DFINPDDEPNKSISEL  259 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~l----ga-~--~v~~~~~~~~~~~~~~  259 (332)
                      +....++.++++||-+|+|. |..+..+++..+ ..+|+.++.+++..+.+++.    |. +  .++..+      +   
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d------~---  173 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD------I---  173 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC------G---
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECC------H---
Confidence            34566889999999999987 888888998864 34999999999888776543    54 2  222221      1   


Q ss_pred             HHHhcCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCC
Q 043260          260 VKEMTHGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       260 ~~~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                       .+......||+|+.....+ ..+..+.+.|+++ |++++....
T Consensus       174 -~~~~~~~~~D~V~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  215 (277)
T 1o54_A          174 -SEGFDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCPT  215 (277)
T ss_dssp             -GGCCSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEESS
T ss_pred             -HHcccCCccCEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeCC
Confidence             1112233799999987765 5788999999998 999887653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.32  E-value=2.6e-07  Score=74.59  Aligned_cols=109  Identities=15%  Similarity=0.087  Sum_probs=79.5

Q ss_pred             chhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCCCeeeCCCCCCCchHHH
Q 043260          180 GYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGMTDFINPDDEPNKSISE  258 (332)
Q Consensus       180 ~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~  258 (332)
                      +++++++++ +......+++|+|+|+|.+|.++++.++..|. +|+++++++++.+ +++++|.+.. ..     .++.+
T Consensus         5 ~~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~~~-~~-----~~~~~   76 (144)
T 3oj0_A            5 KVSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYEYV-LI-----NDIDS   76 (144)
T ss_dssp             CCSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCEEE-EC-----SCHHH
T ss_pred             cccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCceE-ee-----cCHHH
Confidence            456777776 44444569999999999999999999988998 5999999998875 4677775432 22     23333


Q ss_pred             HHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          259 LVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       259 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .+.      ++|+||.+++....+.. .+.++++ +.++.++.+..
T Consensus        77 ~~~------~~Divi~at~~~~~~~~-~~~l~~g-~~vid~~~p~~  114 (144)
T 3oj0_A           77 LIK------NNDVIITATSSKTPIVE-ERSLMPG-KLFIDLGNPPN  114 (144)
T ss_dssp             HHH------TCSEEEECSCCSSCSBC-GGGCCTT-CEEEECCSSCS
T ss_pred             Hhc------CCCEEEEeCCCCCcEee-HHHcCCC-CEEEEccCCcc
Confidence            332      58999999998533322 2678887 99999998754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.28  E-value=2e-06  Score=80.92  Aligned_cols=125  Identities=20%  Similarity=0.283  Sum_probs=84.0

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC-------------CCCCCchH----HH
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP-------------DDEPNKSI----SE  258 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~-------------~~~~~~~~----~~  258 (332)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|+++|+++++++.++++|++.+...             ..+.++.+    .+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            57899999999999999999999999 99999999999999999998643211             00000111    12


Q ss_pred             HHHHhcCCCCccEEEEcCCChH------HHHHHHHHhccCCcEEEEEcCCCCCcccCC-hH-hHhc-CcEEEEee
Q 043260          259 LVKEMTHGTGVDYGFECTGVAS------LISEALEATKLGKGKVMAIGAANEAKVPLN-FP-AIAL-GRNLKGTI  324 (332)
Q Consensus       259 ~~~~~~~~~g~d~vid~~g~~~------~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~-~~-~~~~-~~~i~g~~  324 (332)
                      .+.+..  .++|+||.++..+.      ...+.++.++++ +.++.++...+...+.+ +. .+.. ++++.|..
T Consensus       268 ~l~e~l--~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~G-sVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~  339 (405)
T 4dio_A          268 LVAEHI--AKQDIVITTALIPGRPAPRLVTREMLDSMKPG-SVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHL  339 (405)
T ss_dssp             HHHHHH--HTCSEEEECCCCSSSCCCCCBCHHHHTTSCTT-CEEEETTGGGTCSBTTCCTTEEEEETTEEEEECS
T ss_pred             HHHHHh--cCCCEEEECCcCCCCCCCEEecHHHHhcCCCC-CEEEEEeCCCCCCccccCCCCeEEECCEEEEEeC
Confidence            233332  25899999864321      236889999998 99999986443222221 11 1222 77777664

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.22  E-value=5.2e-06  Score=77.44  Aligned_cols=105  Identities=21%  Similarity=0.255  Sum_probs=77.1

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC-CC----CCC----c----hHHHHHHH
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP-DD----EPN----K----SISELVKE  262 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~-~~----~~~----~----~~~~~~~~  262 (332)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|++++++.++++.++++|++.+... +.    ...    +    ...+.+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            67899999999999999999999999 89999999999999999998644210 00    000    0    11123334


Q ss_pred             hcCCCCccEEEEcCCCh-----H-HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          263 MTHGTGVDYGFECTGVA-----S-LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~-----~-~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ..  ..+|+||.++..+     . .....++.++++ +.++.++...+
T Consensus       262 ~l--~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpG-sVIVDvA~d~G  306 (381)
T 3p2y_A          262 AI--TKFDIVITTALVPGRPAPRLVTAAAATGMQPG-SVVVDLAGETG  306 (381)
T ss_dssp             HH--TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGT
T ss_pred             HH--hcCCEEEECCCCCCcccceeecHHHHhcCCCC-cEEEEEeCCCC
Confidence            33  3599999986332     1 236889999998 99999987655

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.16  E-value=1.6e-05  Score=75.10  Aligned_cols=111  Identities=21%  Similarity=0.333  Sum_probs=82.6

Q ss_pred             hHHHHHHhhC-CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHH
Q 043260          184 GFGAAWKEFK-VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKE  262 (332)
Q Consensus       184 a~~al~~~~~-~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~  262 (332)
                      .+.++.+..+ .-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +.        ++    .+
T Consensus       206 ~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~~-v~--------~L----ee  271 (435)
T 3gvp_A          206 ILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGFR-LV--------KL----NE  271 (435)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC--------CH----HH
T ss_pred             HHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCCE-ec--------cH----HH
Confidence            3444544433 4589999999999999999999999999 899999998877667777753 21        12    22


Q ss_pred             hcCCCCccEEEEcCCChHHHH-HHHHHhccCCcEEEEEcCCCCCcccCChHhH
Q 043260          263 MTHGTGVDYGFECTGVASLIS-EALEATKLGKGKVMAIGAANEAKVPLNFPAI  314 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~~~~~-~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~  314 (332)
                      ...  ..|+|+.|+++...+. +.++.++++ +.++.+|...   .++++..+
T Consensus       272 al~--~ADIVi~atgt~~lI~~e~l~~MK~g-ailINvgrg~---~EId~~~L  318 (435)
T 3gvp_A          272 VIR--QVDIVITCTGNKNVVTREHLDRMKNS-CIVCNMGHSN---TEIDVASL  318 (435)
T ss_dssp             HTT--TCSEEEECSSCSCSBCHHHHHHSCTT-EEEEECSSTT---TTBTGGGG
T ss_pred             HHh--cCCEEEECCCCcccCCHHHHHhcCCC-cEEEEecCCC---ccCCHHHH
Confidence            222  5899999998776665 889999998 9999998764   34454444

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.11  E-value=3e-05  Score=59.34  Aligned_cols=95  Identities=13%  Similarity=0.092  Sum_probs=66.7

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      ++++|+|+|+|.+|..+++.+...| . +|+++++++++.+.+.+.+...+. +..+      .+.+.+...  ++|+||
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~--~~d~vi   74 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAVLNRMGVATKQVDAKD------EAGLAKALG--GFDAVI   74 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHHHHTTTCEEEECCTTC------HHHHHHHTT--TCSEEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhCCCcEEEecCCC------HHHHHHHHc--CCCEEE
Confidence            4568999999999999999999999 6 899999999988877766655432 3322      123444433  699999


Q ss_pred             EcCCChHHHHHHHHHhccCCcEEEEEc
Q 043260          274 ECTGVASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       274 d~~g~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ++++..........+...+ ..++.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~g-~~~~~~~  100 (118)
T 3ic5_A           75 SAAPFFLTPIIAKAAKAAG-AHYFDLT  100 (118)
T ss_dssp             ECSCGGGHHHHHHHHHHTT-CEEECCC
T ss_pred             ECCCchhhHHHHHHHHHhC-CCEEEec
Confidence            9998754444444445554 5555544

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.10  E-value=3e-05  Score=68.10  Aligned_cols=103  Identities=19%  Similarity=0.150  Sum_probs=75.4

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHHc----CCCe---eeCCCCCCCchHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEAF----GMTD---FINPDDEPNKSISEL  259 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~l----ga~~---v~~~~~~~~~~~~~~  259 (332)
                      +....++.++++||-+|+|. |..+..+++..+ ..+|+.+|.+++..+.+++.    |...   ++..+      +   
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d------~---  154 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD------I---  154 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSC------G---
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECc------h---
Confidence            34567889999999999987 888888998853 34999999999888776553    5432   22221      1   


Q ss_pred             HHHhcCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCC
Q 043260          260 VKEMTHGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       260 ~~~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                       .+......||+|+.....+ ..+..+.+.|+++ |+++++...
T Consensus       155 -~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  196 (255)
T 3mb5_A          155 -YEGIEEENVDHVILDLPQPERVVEHAAKALKPG-GFFVAYTPC  196 (255)
T ss_dssp             -GGCCCCCSEEEEEECSSCGGGGHHHHHHHEEEE-EEEEEEESS
T ss_pred             -hhccCCCCcCEEEECCCCHHHHHHHHHHHcCCC-CEEEEEECC
Confidence             1223334699999988775 3789999999998 999987643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.08  E-value=1.6e-05  Score=64.65  Aligned_cols=92  Identities=22%  Similarity=0.212  Sum_probs=65.9

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCeeeCCCCCCCchHHHHHHHhcCCCCccE
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTDFINPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      ...++++|+|+|+|.+|..+++.++..|. +|+++++++++.+.++ +.|...+. .+.   .+ .+.+.+. +..++|+
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~~~-~d~---~~-~~~l~~~-~~~~ad~   87 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFTVV-GDA---AE-FETLKEC-GMEKADM   87 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEEEE-SCT---TS-HHHHHTT-TGGGCSE
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcEEE-ecC---CC-HHHHHHc-CcccCCE
Confidence            34678899999999999999999999998 9999999998887776 66665432 221   11 1223332 2247999


Q ss_pred             EEEcCCChHHHHHHHHHhcc
Q 043260          272 GFECTGVASLISEALEATKL  291 (332)
Q Consensus       272 vid~~g~~~~~~~~~~~l~~  291 (332)
                      ||.+++.......+...+++
T Consensus        88 Vi~~~~~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           88 VFAFTNDDSTNFFISMNARY  107 (155)
T ss_dssp             EEECSSCHHHHHHHHHHHHH
T ss_pred             EEEEeCCcHHHHHHHHHHHH
Confidence            99999997655566666654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.05  E-value=9.8e-06  Score=73.15  Aligned_cols=100  Identities=11%  Similarity=0.149  Sum_probs=74.9

Q ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc----CCCe--eeCCCCCCCchHHHHHHHhc
Q 043260          191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF----GMTD--FINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l----ga~~--v~~~~~~~~~~~~~~~~~~~  264 (332)
                      .+++++|++||.+|+|+.+..++.+++..|+ +|+++|.+++..+.+++.    |.+.  ++..+.   .       ++.
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa---~-------~l~  185 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE---T-------VID  185 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCG---G-------GGG
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECch---h-------hCC
Confidence            4678999999999999877777888887888 999999999988877653    5432  222211   1       122


Q ss_pred             CCCCccEEEEcCCCh---HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          265 HGTGVDYGFECTGVA---SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       265 ~~~g~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                       ...||+|+.+...+   ..+..+.+.|+|+ |++++.....
T Consensus       186 -d~~FDvV~~~a~~~d~~~~l~el~r~LkPG-G~Lvv~~~~~  225 (298)
T 3fpf_A          186 -GLEFDVLMVAALAEPKRRVFRNIHRYVDTE-TRIIYRTYTG  225 (298)
T ss_dssp             -GCCCSEEEECTTCSCHHHHHHHHHHHCCTT-CEEEEEECCG
T ss_pred             -CCCcCEEEECCCccCHHHHHHHHHHHcCCC-cEEEEEcCcc
Confidence             34799999866543   5789999999998 9999876543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.01  E-value=1.4e-05  Score=70.25  Aligned_cols=103  Identities=16%  Similarity=0.043  Sum_probs=75.3

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHHc-----CCCee--eCCCCCCCchHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEAF-----GMTDF--INPDDEPNKSISEL  259 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~l-----ga~~v--~~~~~~~~~~~~~~  259 (332)
                      +.....+.++++||.+|+|. |..+..+++..| ..+|+++|.+++..+.+++.     |.+.+  +..+          
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d----------  156 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGK----------  156 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESC----------
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECc----------
Confidence            33566789999999999986 888889998864 34999999999988877653     63322  2211          


Q ss_pred             HHHh-cCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCC
Q 043260          260 VKEM-THGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       260 ~~~~-~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +.+. .....+|+|+...... ..+..+.+.|+++ |+++++...
T Consensus       157 ~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  200 (258)
T 2pwy_A          157 LEEAELEEAAYDGVALDLMEPWKVLEKAALALKPD-RFLVAYLPN  200 (258)
T ss_dssp             GGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEESC
T ss_pred             hhhcCCCCCCcCEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeCC
Confidence            1111 2223699999887765 5788999999998 999987754

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.00  E-value=5.4e-06  Score=76.38  Aligned_cols=105  Identities=15%  Similarity=0.118  Sum_probs=69.9

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHc----C-----------CC--eeeCCCC
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAF----G-----------MT--DFINPDD  250 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~l----g-----------a~--~v~~~~~  250 (332)
                      .....+.+|++||-+|+|. |..+..+++..|. .+|+.+|.+++..+.+++.    |           .+  .++..+.
T Consensus        98 l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~  176 (336)
T 2b25_A           98 LSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI  176 (336)
T ss_dssp             HHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred             HHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh
Confidence            3556789999999999987 8888888887763 4999999999888776542    1           01  2222211


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCC
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                         .+.   ...+.++ .||+|+-....+ ..+..+.+.|+++ |+++++...
T Consensus       177 ---~~~---~~~~~~~-~fD~V~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~~  221 (336)
T 2b25_A          177 ---SGA---TEDIKSL-TFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVVN  221 (336)
T ss_dssp             ---TCC---C--------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEESS
T ss_pred             ---HHc---ccccCCC-CeeEEEECCCCHHHHHHHHHHhcCCC-cEEEEEeCC
Confidence               111   0111122 599999876654 3478999999998 999977653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.95  E-value=9.3e-05  Score=61.70  Aligned_cols=97  Identities=20%  Similarity=0.280  Sum_probs=69.2

Q ss_pred             CCEEEEECCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      +++|+|+|.|.+|..+++.++.. |. +|+++++++++.+.+++.|...+. +..+   .   +.+.+.++-.++|+||.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~gd~~~---~---~~l~~~~~~~~ad~vi~  111 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISGDATD---P---DFWERILDTGHVKLVLL  111 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEECCTTC---H---HHHHTBCSCCCCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEcCCCC---H---HHHHhccCCCCCCEEEE
Confidence            67899999999999999999998 98 899999999999888888876544 3322   2   22334323447999999


Q ss_pred             cCCChHHHHHHHHHhccCC--cEEEEEc
Q 043260          275 CTGVASLISEALEATKLGK--GKVMAIG  300 (332)
Q Consensus       275 ~~g~~~~~~~~~~~l~~~~--G~~v~~G  300 (332)
                      ++++......+...++..+  ..++...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          112 AMPHHQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             eCCChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            9998654444444444431  4666543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.90  E-value=7.9e-05  Score=66.30  Aligned_cols=104  Identities=17%  Similarity=0.153  Sum_probs=74.0

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHHc-----C--CC--eeeCCCCCCCchHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEAF-----G--MT--DFINPDDEPNKSIS  257 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~l-----g--a~--~v~~~~~~~~~~~~  257 (332)
                      +.....+.++++||.+|+| .|..+..+++..+ ..+|+.+|.+++..+.+++.     |  .+  .++..+.   .+. 
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~---~~~-  165 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL---ADS-  165 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG---GGC-
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch---Hhc-
Confidence            3356678999999999998 5888888988763 34999999999888776553     4  22  2222211   110 


Q ss_pred             HHHHHhcCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCC
Q 043260          258 ELVKEMTHGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       258 ~~~~~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                           ......||+|+.....+ ..+..+.+.|+++ |+++++...
T Consensus       166 -----~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  205 (280)
T 1i9g_A          166 -----ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVAT  205 (280)
T ss_dssp             -----CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEESS
T ss_pred             -----CCCCCceeEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeCC
Confidence                 11233699999877765 5788999999998 999887654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.88  E-value=3.8e-05  Score=69.38  Aligned_cols=95  Identities=21%  Similarity=0.249  Sum_probs=72.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      -.|++|+|+|.|.+|..+++.++.+|+ +|++++++.++.+.++++|++.+ +.     .++    .++.  ..+|+|+.
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-~~-----~~l----~~~l--~~aDvVi~  219 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGMEPF-HI-----SKA----AQEL--RDVDVCIN  219 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSEEE-EG-----GGH----HHHT--TTCSEEEE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCeec-Ch-----hhH----HHHh--cCCCEEEE
Confidence            478999999999999999999999999 99999999888777777886532 21     222    2222  25899999


Q ss_pred             cCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          275 CTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       275 ~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ++...-.-...++.++++ +.++.++...
T Consensus       220 ~~p~~~i~~~~l~~mk~~-~~lin~ar~~  247 (293)
T 3d4o_A          220 TIPALVVTANVLAEMPSH-TFVIDLASKP  247 (293)
T ss_dssp             CCSSCCBCHHHHHHSCTT-CEEEECSSTT
T ss_pred             CCChHHhCHHHHHhcCCC-CEEEEecCCC
Confidence            998632224677889998 9999998643

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.86  E-value=8.5e-05  Score=70.25  Aligned_cols=120  Identities=16%  Similarity=0.214  Sum_probs=87.9

Q ss_pred             HHHHHHhhC-CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHh
Q 043260          185 FGAAWKEFK-VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       185 ~~al~~~~~-~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~  263 (332)
                      +.++.+... .-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|...+         ++    .+.
T Consensus       198 ldgi~ratg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~~~---------sL----~ea  263 (436)
T 3h9u_A          198 VDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQVL---------LV----EDV  263 (436)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC---------CH----HHH
T ss_pred             HHHHHHhcCCcccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCeec---------CH----HHH
Confidence            344433333 3468999999999999999999999999 99999999887777777776322         12    222


Q ss_pred             cCCCCccEEEEcCCChHHHH-HHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEee
Q 043260          264 THGTGVDYGFECTGVASLIS-EALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTI  324 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~~~~~-~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~  324 (332)
                      ..  .+|+|+.+.++...+. ..++.++++ ..++.+|-.   ...++...+.. ..++.++.
T Consensus       264 l~--~ADVVilt~gt~~iI~~e~l~~MK~g-AIVINvgRg---~vEID~~~L~~~~~~~~~ir  320 (436)
T 3h9u_A          264 VE--EAHIFVTTTGNDDIITSEHFPRMRDD-AIVCNIGHF---DTEIQVAWLKANAKERVEVK  320 (436)
T ss_dssp             TT--TCSEEEECSSCSCSBCTTTGGGCCTT-EEEEECSSS---GGGBCHHHHHHHCSEEEEEE
T ss_pred             Hh--hCCEEEECCCCcCccCHHHHhhcCCC-cEEEEeCCC---CCccCHHHHHhhcCceEeec
Confidence            22  5899999998765554 778888987 888888743   36688887776 56666654

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.83  E-value=4.1e-05  Score=73.50  Aligned_cols=101  Identities=21%  Similarity=0.288  Sum_probs=76.9

Q ss_pred             HHHHHhhCC-CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhc
Q 043260          186 GAAWKEFKV-EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       186 ~al~~~~~~-~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      .++.+..+. -.|++++|+|+|++|.++++.++.+|+ +|+++++++.+.+.+...|++ +.+.     +       +. 
T Consensus       253 dgi~r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d-v~~l-----e-------e~-  317 (488)
T 3ond_A          253 DGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ-VLTL-----E-------DV-  317 (488)
T ss_dssp             HHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCG-----G-------GT-
T ss_pred             HHHHHHcCCcccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc-cCCH-----H-------HH-
Confidence            344444443 479999999999999999999999999 999999998888777777763 2211     1       11 


Q ss_pred             CCCCccEEEEcCCChHHHH-HHHHHhccCCcEEEEEcCCC
Q 043260          265 HGTGVDYGFECTGVASLIS-EALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       265 ~~~g~d~vid~~g~~~~~~-~~~~~l~~~~G~~v~~G~~~  303 (332)
                       ...+|+|+++.|..+.+. ..++.++++ +.++.+|...
T Consensus       318 -~~~aDvVi~atG~~~vl~~e~l~~mk~g-aiVvNaG~~~  355 (488)
T 3ond_A          318 -VSEADIFVTTTGNKDIIMLDHMKKMKNN-AIVCNIGHFD  355 (488)
T ss_dssp             -TTTCSEEEECSSCSCSBCHHHHTTSCTT-EEEEESSSTT
T ss_pred             -HHhcCEEEeCCCChhhhhHHHHHhcCCC-eEEEEcCCCC
Confidence             125899999999866664 488889997 9998888753

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.82  E-value=7e-05  Score=66.97  Aligned_cols=104  Identities=17%  Similarity=0.200  Sum_probs=73.8

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCee---eCCCCCCCchHHH---HHHHhcCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTDF---INPDDEPNKSISE---LVKEMTHG  266 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~v---~~~~~~~~~~~~~---~~~~~~~~  266 (332)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+++++++++++. ++++|....   .|..+  .++..+   .+.+..+ 
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G-  102 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGIQADSAN--LAELDRLYEKVKAEAG-  102 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHS-
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeEEEEecCCC--HHHHHHHHHHHHHHcC-
Confidence            47899999998 9999999999999999 99999999988764 466775432   23332  233332   3333333 


Q ss_pred             CCccEEEEcCCCh-------------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          267 TGVDYGFECTGVA-------------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       267 ~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                       +.|++++++|..                         -..+.++..++++ |.+|.+++..+
T Consensus       103 -~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~-G~IInisS~~~  163 (273)
T 4fgs_A          103 -RIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG-SSVVLTGSTAG  163 (273)
T ss_dssp             -CEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-EEEEEECCGGG
T ss_pred             -CCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CeEEEEeehhh
Confidence             599999999852                         1234556677777 99999887654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.74  E-value=7.9e-05  Score=67.50  Aligned_cols=95  Identities=18%  Similarity=0.246  Sum_probs=72.3

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      -.|++++|+|.|.+|..+++.++.+|. +|++.+++.++.+.++++|.+ +++.     .+    +.++.  ..+|+|+.
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~-~~~~-----~~----l~~~l--~~aDvVi~  221 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV-PFHT-----DE----LKEHV--KDIDICIN  221 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE-EEEG-----GG----HHHHS--TTCSEEEE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe-EEch-----hh----HHHHh--hCCCEEEE
Confidence            468999999999999999999999999 999999998887777777764 2222     22    23332  25899999


Q ss_pred             cCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          275 CTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       275 ~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +++..-.-...++.++++ +.++.++...
T Consensus       222 ~~p~~~i~~~~~~~mk~g-~~lin~a~g~  249 (300)
T 2rir_A          222 TIPSMILNQTVLSSMTPK-TLILDLASRP  249 (300)
T ss_dssp             CCSSCCBCHHHHTTSCTT-CEEEECSSTT
T ss_pred             CCChhhhCHHHHHhCCCC-CEEEEEeCCC
Confidence            998632224567788887 9999998643

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.73  E-value=9.5e-05  Score=69.99  Aligned_cols=93  Identities=20%  Similarity=0.255  Sum_probs=72.8

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      .-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +.        ++.+.+      ..+|+|+
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~-vv--------~LeElL------~~ADIVv  307 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFE-VV--------TLDDAA------STADIVV  307 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE-EC--------CHHHHG------GGCSEEE
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCce-ec--------cHHHHH------hhCCEEE
Confidence            4689999999999999999999999999 999999988776666666653 21        122222      2589999


Q ss_pred             EcCCChHHH-HHHHHHhccCCcEEEEEcCCC
Q 043260          274 ECTGVASLI-SEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       274 d~~g~~~~~-~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .++++...+ .+.++.++++ +.++.+|-..
T Consensus       308 ~atgt~~lI~~e~l~~MK~G-AILINvGRgd  337 (464)
T 3n58_A          308 TTTGNKDVITIDHMRKMKDM-CIVGNIGHFD  337 (464)
T ss_dssp             ECCSSSSSBCHHHHHHSCTT-EEEEECSSST
T ss_pred             ECCCCccccCHHHHhcCCCC-eEEEEcCCCC
Confidence            999986555 5888999998 8888888654

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.70  E-value=0.00033  Score=61.63  Aligned_cols=102  Identities=17%  Similarity=0.127  Sum_probs=68.8

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee-e--CCCCCCCchHHHH---HHHhcCCCCcc
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF-I--NPDDEPNKSISEL---VKEMTHGTGVD  270 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v-~--~~~~~~~~~~~~~---~~~~~~~~g~d  270 (332)
                      ++|||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.+-+.... +  |..+  .++..+.   +.+..+  +.|
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~v~~~~~~~g--~iD   77 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYFHGDVAD--PLTLKKFVEYAMEKLQ--RID   77 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTS--HHHHHHHHHHHHHHHS--CCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCEEEEEecCCC--HHHHHHHHHHHHHHcC--CCC
Confidence            68999998 9999999999999999 99999999988876655444322 2  3222  2333332   333333  599


Q ss_pred             EEEEcCCCh-------------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          271 YGFECTGVA-------------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       271 ~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ++++++|..                         ...+.++..+.+.+|+++.+++..+
T Consensus        78 iLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~  136 (247)
T 3ged_A           78 VLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRA  136 (247)
T ss_dssp             EEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            999998742                         1123444455444499999987654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.66  E-value=0.00065  Score=54.02  Aligned_cols=97  Identities=12%  Similarity=0.117  Sum_probs=69.0

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      ..++++|+|.|.+|..+++.++..|. +|+++++++++.+.+++.|...+. +..+   .+   .+.+. +-..+|+|+-
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~gd~~~---~~---~l~~a-~i~~ad~vi~   77 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVLGNAAN---EE---IMQLA-HLECAKWLIL   77 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEESCTTS---HH---HHHHT-TGGGCSEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEECCCCC---HH---HHHhc-CcccCCEEEE
Confidence            34679999999999999999999999 999999999999988888876544 2222   22   23322 3347999999


Q ss_pred             cCCChHHH---HHHHHHhccCCcEEEEEcC
Q 043260          275 CTGVASLI---SEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       275 ~~g~~~~~---~~~~~~l~~~~G~~v~~G~  301 (332)
                      ++++...-   -...+.+.+. .+++..-.
T Consensus        78 ~~~~~~~n~~~~~~a~~~~~~-~~iiar~~  106 (140)
T 3fwz_A           78 TIPNGYEAGEIVASARAKNPD-IEIIARAH  106 (140)
T ss_dssp             CCSCHHHHHHHHHHHHHHCSS-SEEEEEES
T ss_pred             ECCChHHHHHHHHHHHHHCCC-CeEEEEEC
Confidence            99985322   2344555555 66655443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.57  E-value=0.00056  Score=59.05  Aligned_cols=100  Identities=13%  Similarity=0.177  Sum_probs=69.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      .+++|||+|+ |.+|..+++.+...|. +|+++++++++.+.+.+.+...++..+-   .   +.+.+...  ++|+||+
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~Dl---~---~~~~~~~~--~~D~vi~   90 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDIVVANL---E---EDFSHAFA--SIDAVVF   90 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEEEECCT---T---SCCGGGGT--TCSEEEE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceEEEccc---H---HHHHHHHc--CCCEEEE
Confidence            5789999998 9999999999999998 9999999999988777766623332221   1   22333333  6999999


Q ss_pred             cCCChH-------------HHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          275 CTGVAS-------------LISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       275 ~~g~~~-------------~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      ++|...             ....+++.+.+. .++++.+++...
T Consensus        91 ~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  134 (236)
T 3e8x_A           91 AAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT  134 (236)
T ss_dssp             CCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred             CCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            998531             122333343332 278999988765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.56  E-value=0.00067  Score=53.75  Aligned_cols=76  Identities=21%  Similarity=0.321  Sum_probs=57.9

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .++++|+|+|.+|..+++.+...|. +|+++++++++.+.+++.|...+. +..+   .   +.+.+. +-.++|+||.+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~~gd~~~---~---~~l~~~-~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAVIADPTD---E---SFYRSL-DLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEECCTTC---H---HHHHHS-CCTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEEECCCCC---H---HHHHhC-CcccCCEEEEe
Confidence            4679999999999999999999999 999999999999888887764433 2222   2   223333 33479999999


Q ss_pred             CCChH
Q 043260          276 TGVAS  280 (332)
Q Consensus       276 ~g~~~  280 (332)
                      +++..
T Consensus        78 ~~~~~   82 (141)
T 3llv_A           78 GSDDE   82 (141)
T ss_dssp             CSCHH
T ss_pred             cCCHH
Confidence            99753

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.55  E-value=0.00025  Score=62.15  Aligned_cols=106  Identities=14%  Similarity=0.174  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC-eeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          193 KVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT-DFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       193 ~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      ++-.|+++||+|+ +++|.+.++.+...|+ +|+++++++++++..+.-.+. ...|..+  .++..+.+ +..+  +.|
T Consensus         7 dlf~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~-~~~g--~iD   80 (242)
T 4b79_A            7 DIYAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAPRHPRIRREELDITD--SQRLQRLF-EALP--RLD   80 (242)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSCCCTTEEEEECCTTC--HHHHHHHH-HHCS--CCS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhhhcCCeEEEEecCCC--HHHHHHHH-HhcC--CCC
Confidence            3457999999998 9999999999999999 999999988776532211111 1223333  23333333 3333  599


Q ss_pred             EEEEcCCCh-----------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          271 YGFECTGVA-----------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       271 ~vid~~g~~-----------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      +++++.|..                       -..+.++..++.++|++|.+++..+
T Consensus        81 iLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~  137 (242)
T 4b79_A           81 VLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYS  137 (242)
T ss_dssp             EEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGG
T ss_pred             EEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            999999842                       1123445566543499999987654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.51  E-value=0.001  Score=58.66  Aligned_cols=104  Identities=14%  Similarity=0.207  Sum_probs=69.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee---eCCCCCCCchHHH---HHHHhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF---INPDDEPNKSISE---LVKEMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~---~~~~~~  264 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+    ++.|.+..   .|..+  .++..+   .+.+..
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSK--KKDVEEFVRRTFETY   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            5889999998 9999999999999999 999999999887533    44565432   23332  233333   233333


Q ss_pred             CCCCccEEEEcCCCh--------------------------HHHHHHHHHhcc-CCcEEEEEcCCCC
Q 043260          265 HGTGVDYGFECTGVA--------------------------SLISEALEATKL-GKGKVMAIGAANE  304 (332)
Q Consensus       265 ~~~g~d~vid~~g~~--------------------------~~~~~~~~~l~~-~~G~~v~~G~~~~  304 (332)
                      +  +.|++++++|..                          -..+.++..+.+ ++|++|.+++..+
T Consensus        83 G--~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g  147 (254)
T 4fn4_A           83 S--RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAG  147 (254)
T ss_dssp             S--CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             C--CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhh
Confidence            3  589999998831                          123444554433 2389999987654

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.50  E-value=0.00096  Score=58.91  Aligned_cols=108  Identities=18%  Similarity=0.184  Sum_probs=69.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHHcCCCeeeCCCCC-CCchHHHHHHHhcCC-CC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK----GEAFGMTDFINPDDE-PNKSISELVKEMTHG-TG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~----~~~lga~~v~~~~~~-~~~~~~~~~~~~~~~-~g  268 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.    +++.|.+.....-+. +.++..+.+.+.... .+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   86 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIH   86 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            6889999988 9999999999999999 99999999887653    234455433221111 223333333332211 25


Q ss_pred             ccEEEEcCCCh-------------------------HHHHHHHHHh-cc-CCcEEEEEcCCCC
Q 043260          269 VDYGFECTGVA-------------------------SLISEALEAT-KL-GKGKVMAIGAANE  304 (332)
Q Consensus       269 ~d~vid~~g~~-------------------------~~~~~~~~~l-~~-~~G~~v~~G~~~~  304 (332)
                      .|++++++|..                         ...+.++..+ ++ ++|++|.+++..+
T Consensus        87 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~  149 (255)
T 4g81_D           87 VDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTS  149 (255)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGG
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhh
Confidence            89999999852                         1234455555 22 2389999987664

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.46  E-value=0.0004  Score=54.82  Aligned_cols=77  Identities=17%  Similarity=0.305  Sum_probs=54.6

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      ++++++|+|+|.+|..+++.+...|. +|+++++++++.+.+++.+...+. .+.   .+ .+.+.+. +-.++|+|+.+
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~-~d~---~~-~~~l~~~-~~~~~d~vi~~   77 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVI-ANA---TE-ENELLSL-GIRNFEYVIVA   77 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSEEEE-CCT---TC-HHHHHTT-TGGGCSEEEEC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCEEEE-eCC---CC-HHHHHhc-CCCCCCEEEEC
Confidence            35679999999999999999999998 899999988877766666653332 221   12 2233332 12369999999


Q ss_pred             CCCh
Q 043260          276 TGVA  279 (332)
Q Consensus       276 ~g~~  279 (332)
                      ++..
T Consensus        78 ~~~~   81 (144)
T 2hmt_A           78 IGAN   81 (144)
T ss_dssp             CCSC
T ss_pred             CCCc
Confidence            9974

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.45  E-value=0.0016  Score=56.91  Aligned_cols=80  Identities=21%  Similarity=0.281  Sum_probs=55.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCeeeCCCCC-CCchHHHHH---HHhcCCCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDFINPDDE-PNKSISELV---KEMTHGTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v~~~~~~-~~~~~~~~~---~~~~~~~g~  269 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.......-+. +.++..+.+   .+..+  ++
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g--~i   81 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTG--GI   81 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHS--CC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCC--CC
Confidence            5789999998 9999999999999999 999999998877643 45665433211111 123333333   23333  58


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|+++|.
T Consensus        82 d~lv~nAg~   90 (247)
T 3rwb_A           82 DILVNNASI   90 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.42  E-value=0.0021  Score=55.85  Aligned_cols=79  Identities=19%  Similarity=0.206  Sum_probs=54.6

Q ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCeee---CCCCCCCchHHHHHHHhcCCCC
Q 043260          194 VEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDFI---NPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       194 ~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v~---~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ..+++++||+|+ |++|..+++.+...|+ +|++++++.++++.+ +++.....+   |..+  .+++.+.+.+ .  .+
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~-~--~~   84 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKDNYTIEVCNLAN--KEECSNLISK-T--SN   84 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTS--HHHHHHHHHT-C--SC
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhccCccEEEcCCCC--HHHHHHHHHh-c--CC
Confidence            457889999998 9999999999999998 999999998887654 344433222   2222  2223333322 2  26


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|++|+++|.
T Consensus        85 id~li~~Ag~   94 (249)
T 3f9i_A           85 LDILVCNAGI   94 (249)
T ss_dssp             CSEEEECCC-
T ss_pred             CCEEEECCCC
Confidence            9999999884

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.42  E-value=0.00052  Score=60.36  Aligned_cols=104  Identities=19%  Similarity=0.269  Sum_probs=68.8

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCe-ee--CCCCCCCchHHHH---HHHhcCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTD-FI--NPDDEPNKSISEL---VKEMTHG  266 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~-v~--~~~~~~~~~~~~~---~~~~~~~  266 (332)
                      -.|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++... .+  |..+  .++..+.   +.+..+ 
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g-   81 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPRVHALRSDIAD--LNEIAVLGAAAGQTLG-   81 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHS-
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC--HHHHHHHHHHHHHHhC-
Confidence            36789999998 9999999999999999 999999998887644 4455332 22  3322  2333322   223322 


Q ss_pred             CCccEEEEcCCCh----------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          267 TGVDYGFECTGVA----------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       267 ~g~d~vid~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                       ++|++++++|..          +               ..+.++..++++ |+++.+++...
T Consensus        82 -~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~~  142 (255)
T 4eso_A           82 -AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREG-GSIVFTSSVAD  142 (255)
T ss_dssp             -SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCGGG
T ss_pred             -CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CEEEEECChhh
Confidence             589999998742          1               122333445566 99999987654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.42  E-value=0.0016  Score=55.23  Aligned_cols=102  Identities=15%  Similarity=0.173  Sum_probs=72.9

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC---eeeCCCCCCCchHHHHHH
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT---DFINPDDEPNKSISELVK  261 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~~~  261 (332)
                      ....++.++++||-+|+|. |..++.+++. +. +|+++|.+++..+.+++    .|.+   .++..+.   .+   .  
T Consensus        48 l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~---~--  116 (204)
T 3njr_A           48 LAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA---PA---A--  116 (204)
T ss_dssp             HHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT---TG---G--
T ss_pred             HHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch---hh---h--
Confidence            3566789999999999987 8888888887 76 99999999998876654    4544   2332221   11   1  


Q ss_pred             HhcCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                       +.....||+|+...+.. ..+..+.+.|+++ |++++.....
T Consensus       117 -~~~~~~~D~v~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~~~  157 (204)
T 3njr_A          117 -LADLPLPEAVFIGGGGSQALYDRLWEWLAPG-TRIVANAVTL  157 (204)
T ss_dssp             -GTTSCCCSEEEECSCCCHHHHHHHHHHSCTT-CEEEEEECSH
T ss_pred             -cccCCCCCEEEECCcccHHHHHHHHHhcCCC-cEEEEEecCc
Confidence             11123699999875542 2678999999998 9999877654

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.38  E-value=0.0011  Score=58.64  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=68.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH---HHcCCCe-e--eCCCCCCCchHHH---HHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG---EAFGMTD-F--INPDDEPNKSISE---LVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~---~~lga~~-v--~~~~~~~~~~~~~---~~~~~~~  265 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+   .+.|... .  .|..+  .++..+   .+.+..+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~v~~~~~~~G   82 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQD--DAQCRDAVAQTIATFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            6889999998 9999999999999999 999999988765443   3344332 2  23332  233332   3333333


Q ss_pred             CCCccEEEEcCCCh---------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          266 GTGVDYGFECTGVA---------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       266 ~~g~d~vid~~g~~---------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                        +.|++++++|..         +               ..+.++..++.++|++|.+++..+
T Consensus        83 --~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~  143 (258)
T 4gkb_A           83 --RLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTA  143 (258)
T ss_dssp             --CCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHH
T ss_pred             --CCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhh
Confidence              599999999842         1               233445555543499999987654

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.37  E-value=0.00077  Score=59.38  Aligned_cols=78  Identities=12%  Similarity=0.263  Sum_probs=53.4

Q ss_pred             CCCEEEEECC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe--e--eCCCCCCCchHHH---HHH
Q 043260          196 KGSSVAVFGL-G--AVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD--F--INPDDEPNKSISE---LVK  261 (332)
Q Consensus       196 ~g~~vlV~G~-g--~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~--v--~~~~~~~~~~~~~---~~~  261 (332)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|+++++++++++.+    ++++...  .  .|..+  .++..+   .+.
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   81 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQS--DEEVINGFEQIG   81 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCC--HHHHHHHHHHHH
Confidence            6889999997 5  899999999999999 999999998776544    3344322  2  23332  233333   333


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +..+  +.|+++++.|.
T Consensus        82 ~~~G--~iD~lvnnAg~   96 (256)
T 4fs3_A           82 KDVG--NIDGVYHSIAF   96 (256)
T ss_dssp             HHHC--CCSEEEECCCC
T ss_pred             HHhC--CCCEEEecccc
Confidence            3333  58999999873

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.35  E-value=0.0018  Score=53.94  Aligned_cols=102  Identities=20%  Similarity=0.205  Sum_probs=68.1

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCC---------CeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHH
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGA---------AKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKE  262 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~---------~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~  262 (332)
                      .++++++||.+|+|. |..+..+++..|.         .+|+++|.++.+.     +.....+ ..+- ......+.+.+
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~~~~~~d~-~~~~~~~~~~~   91 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGATFLCPADV-TDPRTSQRILE   91 (196)
T ss_dssp             CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCEEECSCCT-TSHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc-----CCCCeEEEeccC-CCHHHHHHHHH
Confidence            368899999999988 9999999998874         4899999987531     1112233 2221 11333444444


Q ss_pred             hcCCCCccEEEE-----cCCCh------------HHHHHHHHHhccCCcEEEEEcCC
Q 043260          263 MTHGTGVDYGFE-----CTGVA------------SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       263 ~~~~~g~d~vid-----~~g~~------------~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ..++..||+|+.     +++..            ..+..+.+.|+++ |++++.-..
T Consensus        92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~~  147 (196)
T 2nyu_A           92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG-GTFLCKTWA  147 (196)
T ss_dssp             HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEECC
T ss_pred             hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-CEEEEEecC
Confidence            444457999995     33331            4577889999998 999887443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.34  E-value=0.0018  Score=54.59  Aligned_cols=103  Identities=11%  Similarity=0.111  Sum_probs=73.2

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC--eeeCCCCCCCchHHHHHHH
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT--DFINPDDEPNKSISELVKE  262 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~--~v~~~~~~~~~~~~~~~~~  262 (332)
                      ....+++++++||-+|+|. |..+..+++.....+|+++|.+++..+.+++    .|.+  .++..+.   .+   .   
T Consensus        33 l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~---~---  102 (204)
T 3e05_A           33 LSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFA---PE---G---  102 (204)
T ss_dssp             HHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCT---TT---T---
T ss_pred             HHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCCh---hh---h---
Confidence            3556788999999999986 8888888888644599999999998877654    3443  2222221   11   1   


Q ss_pred             hcCCCCccEEEEcCCC---hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          263 MTHGTGVDYGFECTGV---ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +.....+|+|+.....   ...+..+.+.|+++ |++++....
T Consensus       103 ~~~~~~~D~i~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  144 (204)
T 3e05_A          103 LDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSE-GVIVLNAVT  144 (204)
T ss_dssp             CTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTT-CEEEEEECB
T ss_pred             hhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-eEEEEEecc
Confidence            1111369999987652   35778999999998 999987654

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.33  E-value=0.0017  Score=56.35  Aligned_cols=103  Identities=11%  Similarity=0.117  Sum_probs=66.5

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCC-ee--eCCCCCCCchHHHHHH---HhcCCCC
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMT-DF--INPDDEPNKSISELVK---EMTHGTG  268 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~-~v--~~~~~~~~~~~~~~~~---~~~~~~g  268 (332)
                      ++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +++.. ..  .|..+  .+++.+.+.   +..+  +
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g--~   77 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGIVADLAH--HEDVDVAFAAAVEWGG--L   77 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTS--HHHHHHHHHHHHHHHC--S
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCceEEECCCCC--HHHHHHHHHHHHHhcC--C
Confidence            578999998 9999999999999999 9999999988876543 34322 11  23322  233333332   2222  5


Q ss_pred             ccEEEEcCCCh----------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          269 VDYGFECTGVA----------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       269 ~d~vid~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .|++|+++|..          +               ..+.++..+...+|+++.+++...
T Consensus        78 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~  138 (235)
T 3l6e_A           78 PELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAA  138 (235)
T ss_dssp             CSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEEC
T ss_pred             CcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHh
Confidence            89999998842          1               123444455444378888887554

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.32  E-value=0.0017  Score=56.76  Aligned_cols=106  Identities=18%  Similarity=0.220  Sum_probs=67.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCe-eeCCCCCCCchHHHHHH---HhcCCCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTD-FINPDDEPNKSISELVK---EMTHGTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~-v~~~~~~~~~~~~~~~~---~~~~~~g~  269 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++... .+..+-.+.+++.+.+.   +..+  .+
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g--~i   81 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLG--TL   81 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHC--SC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcC--CC
Confidence            4678999998 9999999999999999 999999998776543 4455432 22221111233333332   2222  58


Q ss_pred             cEEEEcCCCh----------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          270 DYGFECTGVA----------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       270 d~vid~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      |++|+++|..          +               ..+.++..+...+|+++.+++...
T Consensus        82 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~  141 (253)
T 1hxh_A           82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSS  141 (253)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhh
Confidence            9999998841          1               123444455443389999987553

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.30  E-value=0.0016  Score=57.60  Aligned_cols=78  Identities=24%  Similarity=0.333  Sum_probs=54.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCee-e--CCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTDF-I--NPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~v-~--~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+. .++++.... +  |..+  .+++.+.+.   +..+  
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g--  100 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANLSD--RKSIKQLAEVAEREME--  100 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTS--HHHHHHHHHHHHHHHT--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEeecCC--HHHHHHHHHHHHHHcC--
Confidence            5788999998 9999999999999999 99999999887664 455665432 2  3322  233333222   2222  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus       101 ~iD~lvnnAg~  111 (266)
T 3grp_A          101 GIDILVNNAGI  111 (266)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            59999999984

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.29  E-value=0.0023  Score=56.14  Aligned_cols=79  Identities=18%  Similarity=0.231  Sum_probs=55.0

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCe-ee--CCCCCCCchHHHHHH---HhcCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTD-FI--NPDDEPNKSISELVK---EMTHG  266 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~-v~--~~~~~~~~~~~~~~~---~~~~~  266 (332)
                      -.++++||+|+ |++|.++++.+...|+ +|++++++.++.+. .++++... .+  |..+  .+++.+.+.   +..+ 
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g-   81 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGPAAYAVQMDVTR--QDSIDAAIAATVEHAG-   81 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHSS-
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCCceEEEeeCCC--HHHHHHHHHHHHHHcC-
Confidence            35789999998 9999999999999999 99999999887654 34555432 22  3332  233333333   2322 


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                       ++|++|+++|.
T Consensus        82 -~id~lv~~Ag~   92 (259)
T 4e6p_A           82 -GLDILVNNAAL   92 (259)
T ss_dssp             -SCCEEEECCCC
T ss_pred             -CCCEEEECCCc
Confidence             59999999884

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.28  E-value=0.0025  Score=56.67  Aligned_cols=104  Identities=14%  Similarity=0.162  Sum_probs=68.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCee---eCCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDF---INPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v---~~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++....   .|..+  .++..+.+.   +..+  
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g--  100 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRVDVSS--AKDAESMVEKTTAKWG--  100 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHS--
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHHcC--
Confidence            5788999998 9999999999999999 999999998876644 44554422   23332  233333332   2222  


Q ss_pred             CccEEEEcCCCh----------H---------------HHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          268 GVDYGFECTGVA----------S---------------LISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       268 g~d~vid~~g~~----------~---------------~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      ++|++|+++|..          +               ..+.++..+.+. .|+++.+++...
T Consensus       101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~  163 (277)
T 4dqx_A          101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTA  163 (277)
T ss_dssp             CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGG
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhh
Confidence            589999998831          1               123444455442 279999987553

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.27  E-value=0.00091  Score=54.74  Aligned_cols=105  Identities=12%  Similarity=0.198  Sum_probs=72.9

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC-eeeCCCCCCCchHHHHHHHhc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT-DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~-~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      +...+.++++||-+|+|. |..+..+++..+..+|+++|.+++..+.+++    .|.+ .+....+     ..+.+... 
T Consensus        19 ~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d-----~~~~~~~~-   91 (178)
T 3hm2_A           19 SALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQG-----APRAFDDV-   91 (178)
T ss_dssp             HHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECC-----TTGGGGGC-
T ss_pred             HHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecc-----hHhhhhcc-
Confidence            556788999999999986 8888888888744499999999988877654    3544 2221111     10111111 


Q ss_pred             CCCCccEEEEcCCCh--HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          265 HGTGVDYGFECTGVA--SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       265 ~~~g~d~vid~~g~~--~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                       ...||+|+......  ..+..+.+.|+++ |++++.....
T Consensus        92 -~~~~D~i~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~~  130 (178)
T 3hm2_A           92 -PDNPDVIFIGGGLTAPGVFAAAWKRLPVG-GRLVANAVTV  130 (178)
T ss_dssp             -CSCCSEEEECC-TTCTTHHHHHHHTCCTT-CEEEEEECSH
T ss_pred             -CCCCCEEEECCcccHHHHHHHHHHhcCCC-CEEEEEeecc
Confidence             13799999866543  3789999999998 9999876543

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.24  E-value=0.0035  Score=53.86  Aligned_cols=102  Identities=10%  Similarity=0.133  Sum_probs=65.4

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCe-e--eCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTD-F--INPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~-v--~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      +++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +++... .  .|..+  .+++.+.+.+. .. .+|++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~-~~-~~d~l   76 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLSNNVGYRARDLAS--HQEVEQLFEQL-DS-IPSTV   76 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCSSCCCEEECCTTC--HHHHHHHHHSC-SS-CCSEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhccCeEeecCCC--HHHHHHHHHHH-hh-cCCEE
Confidence            36899998 9999999999999999 8999999998877554 444321 1  23333  23333333333 22 35999


Q ss_pred             EEcCCCh----------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          273 FECTGVA----------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       273 id~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      |+++|..          +               .++.++..+.+.+++++.+++...
T Consensus        77 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~  133 (230)
T 3guy_A           77 VHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAA  133 (230)
T ss_dssp             EECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGG
T ss_pred             EEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeccc
Confidence            9998831          1               123444555554368888876543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.24  E-value=0.0011  Score=58.16  Aligned_cols=102  Identities=18%  Similarity=0.167  Sum_probs=67.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHHcCCCeee---CCCCCCCchHHHHHHHhcCCCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPC--RKDKGEAFGMTDFI---NPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~--~~~~~~~lga~~v~---~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      .|+++||+|+ +++|.+.++.+...|+ +|++++++++  ..+.+++.|.+...   |..+  ..+    +++.....+.
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d--~~~----v~~~~~~g~i   80 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNASALLIDFAD--PLA----AKDSFTDAGF   80 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTS--TTT----TTTSSTTTCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCC--HHH----HHHHHHhCCC
Confidence            5888999988 9999999999999999 9999998754  34566677754322   3222  121    2222222369


Q ss_pred             cEEEEcCCCh-------------------------HHHHHHHHHh-ccC-CcEEEEEcCCCC
Q 043260          270 DYGFECTGVA-------------------------SLISEALEAT-KLG-KGKVMAIGAANE  304 (332)
Q Consensus       270 d~vid~~g~~-------------------------~~~~~~~~~l-~~~-~G~~v~~G~~~~  304 (332)
                      |+++++.|..                         -..+.++..+ +.+ +|++|.+++..+
T Consensus        81 DiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~  142 (247)
T 4hp8_A           81 DILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLS  142 (247)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGG
T ss_pred             CEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhh
Confidence            9999999852                         1123444444 321 289999987654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.22  E-value=0.0012  Score=58.67  Aligned_cols=78  Identities=19%  Similarity=0.299  Sum_probs=52.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCC-Ce--ee--CCCCCCCchHHHHHH---H
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGM-TD--FI--NPDDEPNKSISELVK---E  262 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga-~~--v~--~~~~~~~~~~~~~~~---~  262 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+    ++.|. ..  ++  |..+  .+++.+.+.   +
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  107 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN--EEDILSMFSAIRS  107 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC--HHHHHHHHHHHHH
Confidence            4688999998 9999999999999999 999999988766533    23342 11  22  3332  233333332   2


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      ..+  ++|+||+++|.
T Consensus       108 ~~g--~iD~vi~~Ag~  121 (279)
T 1xg5_A          108 QHS--GVDICINNAGL  121 (279)
T ss_dssp             HHC--CCSEEEECCCC
T ss_pred             hCC--CCCEEEECCCC
Confidence            222  59999999883

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.22  E-value=0.002  Score=57.37  Aligned_cols=103  Identities=18%  Similarity=0.267  Sum_probs=66.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HH----HHHHcCCCee-e--CCCCCCCchHHHHHH---Hh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR-KD----KGEAFGMTDF-I--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~-~~----~~~~lga~~v-~--~~~~~~~~~~~~~~~---~~  263 (332)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++ .+    .+++.|.+.. +  |..+  .+++.+.+.   +.
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV--VEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5788999998 9999999999999999 89999887654 22    2344454422 2  3222  233333332   22


Q ss_pred             cCCCCccEEEEcCCCh----------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          264 THGTGVDYGFECTGVA----------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .+  ++|++|+++|..          +               .++.++..++.. |+++.+++...
T Consensus       105 ~g--~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~~  167 (283)
T 1g0o_A          105 FG--KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSITG  167 (283)
T ss_dssp             HS--CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCGGG
T ss_pred             cC--CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEechhh
Confidence            22  589999998842          1               123445555555 99999987543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.22  E-value=0.00048  Score=58.15  Aligned_cols=134  Identities=15%  Similarity=0.167  Sum_probs=81.0

Q ss_pred             ceeeEE-ecCCceEEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          151 MTEYMV-VDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       151 ~a~~~~-v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      |.+|.. .+....+.+++.+++..+..-  ........+ . ..++++++||-+|+|. |..+..+++ .+..+|+++|.
T Consensus        18 w~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~l-~-~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD~   91 (205)
T 3grz_A           18 WEDYQPVFKDQEIIRLDPGLAFGTGNHQ--TTQLAMLGI-E-RAMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATDI   91 (205)
T ss_dssp             TCCCCCSSTTCEEEEESCC-----CCHH--HHHHHHHHH-H-HHCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEES
T ss_pred             ccccccCCCCceeEEecCCcccCCCCCc--cHHHHHHHH-H-HhccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEEC
Confidence            677766 667788888888876654221  101111112 1 1267889999999976 777777666 56569999999


Q ss_pred             CcchHHHHHH----cCCC--eeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCCh---HHHHHHHHHhccCCcEEEEEc
Q 043260          230 NPCRKDKGEA----FGMT--DFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVA---SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       230 ~~~~~~~~~~----lga~--~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      +++.++.+++    .+..  .++..+.   .       +... ..||+|+......   ..+..+.+.|+++ |++++..
T Consensus        92 s~~~~~~a~~~~~~~~~~~v~~~~~d~---~-------~~~~-~~fD~i~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  159 (205)
T 3grz_A           92 SDESMTAAEENAALNGIYDIALQKTSL---L-------ADVD-GKFDLIVANILAEILLDLIPQLDSHLNED-GQVIFSG  159 (205)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCEEEESST---T-------TTCC-SCEEEEEEESCHHHHHHHGGGSGGGEEEE-EEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCceEEEeccc---c-------ccCC-CCceEEEECCcHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            9988876654    3433  2332221   1       1122 3799999876543   2355667788998 9998865


Q ss_pred             CC
Q 043260          301 AA  302 (332)
Q Consensus       301 ~~  302 (332)
                      ..
T Consensus       160 ~~  161 (205)
T 3grz_A          160 ID  161 (205)
T ss_dssp             EE
T ss_pred             cC
Confidence            44

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.21  E-value=0.002  Score=54.96  Aligned_cols=100  Identities=9%  Similarity=0.068  Sum_probs=64.2

Q ss_pred             CEEEEECC-ChHHHHHHHHHH-HcCCCeEEEEcCCcc-hHHHHHHcCCC-eeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRAR-IQGAAKIIGIDKNPC-RKDKGEAFGMT-DFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~-~~G~~~Vi~~~~~~~-~~~~~~~lga~-~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      +++||+|+ |.+|..+++.+. ..|. +|++++++++ +.+.+.+.+.. .++..+-   .+ .+.+.+...  ++|+||
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~---~d-~~~~~~~~~--~~d~vv   78 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIEGSF---QN-PGXLEQAVT--NAEVVF   78 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEECCT---TC-HHHHHHHHT--TCSEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEECCC---CC-HHHHHHHHc--CCCEEE
Confidence            46999998 999999988888 8999 9999999887 66544322322 2222221   11 123333332  689999


Q ss_pred             EcCCChHH-HHHHHHHhccCC-cEEEEEcCCCC
Q 043260          274 ECTGVASL-ISEALEATKLGK-GKVMAIGAANE  304 (332)
Q Consensus       274 d~~g~~~~-~~~~~~~l~~~~-G~~v~~G~~~~  304 (332)
                      +++|.... ...+++.+...+ ++++.+++...
T Consensus        79 ~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           79 VGAMESGSDMASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             ESCCCCHHHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             EcCCCCChhHHHHHHHHHhcCCCeEEEEeecee
Confidence            99986311 345555555442 58998877654

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.21  E-value=0.0021  Score=56.28  Aligned_cols=77  Identities=18%  Similarity=0.026  Sum_probs=51.7

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH---HcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE---AFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~---~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      +++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.   +.|.+.... +......+.+.+.+..+  ++|++|
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~-d~~~v~~~~~~~~~~~g--~iD~lv   77 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPM-SEQEPAELIEAVTSAYG--QVDVLV   77 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEEC-CCCSHHHHHHHHHHHHS--CCCEEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCcEEEE-CHHHHHHHHHHHHHHhC--CCCEEE
Confidence            46899998 9999999999999999 9999999887765443   335432221 22112233334433333  599999


Q ss_pred             EcCCC
Q 043260          274 ECTGV  278 (332)
Q Consensus       274 d~~g~  278 (332)
                      +++|.
T Consensus        78 ~nAg~   82 (254)
T 1zmt_A           78 SNDIF   82 (254)
T ss_dssp             EECCC
T ss_pred             ECCCc
Confidence            99874

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.21  E-value=0.002  Score=57.35  Aligned_cols=78  Identities=24%  Similarity=0.324  Sum_probs=54.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCC-eee--CCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMT-DFI--NPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~-~v~--~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.. ..+  |..+  .++..+.+.   +..+  
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g--  102 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCGAAACRVDVSD--EQQIIAMVDACVAAFG--  102 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSSCEEEECCTTC--HHHHHHHHHHHHHHHS--
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCcceEEEecCCC--HHHHHHHHHHHHHHcC--
Confidence            5788999998 9999999999999999 999999998876643 455543 222  3332  233333232   3332  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus       103 ~iD~lvnnAg~  113 (277)
T 3gvc_A          103 GVDKLVANAGV  113 (277)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            58999999884

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.20  E-value=0.0023  Score=56.96  Aligned_cols=80  Identities=18%  Similarity=0.156  Sum_probs=53.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHHhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      .|+++||+|+ +++|.++++.+...|+ +|+++++++++.+.+    ++.+... .+  |..+  .++..+.+.+.....
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~g  108 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSE--AGAGTDLIERAEAIA  108 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTS--TTHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCC--HHHHHHHHHHHHHhC
Confidence            5788999998 9999999999999999 999999988765433    2334432 22  3322  233333333221112


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus       109 ~iD~lvnnAg~  119 (275)
T 4imr_A          109 PVDILVINASA  119 (275)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.19  E-value=0.0032  Score=54.24  Aligned_cols=77  Identities=18%  Similarity=0.167  Sum_probs=51.8

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-----HcCCCee-e--CCCCCCCchHHHH---HHHhc
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-----AFGMTDF-I--NPDDEPNKSISEL---VKEMT  264 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-----~lga~~v-~--~~~~~~~~~~~~~---~~~~~  264 (332)
                      ++++||+|+ |++|...++.+...|+ +|++++++.++.+.+.     +.+.... +  |..+  .+++.+.   +.+..
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK--AESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC--HHHHHHHHHHHHHhc
Confidence            678999998 9999999999999999 8999999988765432     3344322 2  3332  2222222   22222


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  ++|++|+++|.
T Consensus        79 g--~id~li~~Ag~   90 (235)
T 3l77_A           79 G--DVDVVVANAGL   90 (235)
T ss_dssp             S--SCSEEEECCCC
T ss_pred             C--CCCEEEECCcc
Confidence            2  58999999884

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.17  E-value=0.0026  Score=56.30  Aligned_cols=78  Identities=21%  Similarity=0.324  Sum_probs=53.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee---eCCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF---INPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~~~---~~~  264 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.|....   .|..+  .++..+.+.   +..
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTD--RHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4678999998 9999999999999999 899999998876543    22344322   23332  233333332   222


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  +.|++|+++|.
T Consensus        80 g--~iD~lVnnAG~   91 (264)
T 3tfo_A           80 G--RIDVLVNNAGV   91 (264)
T ss_dssp             S--CCCEEEECCCC
T ss_pred             C--CCCEEEECCCC
Confidence            2  58999999884

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.17  E-value=0.00039  Score=60.04  Aligned_cols=101  Identities=15%  Similarity=0.227  Sum_probs=69.5

Q ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC---eeeCCCCCCCchHHHHHHHh
Q 043260          191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT---DFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~~~~~  263 (332)
                      .....++++||-+|+| .|..+..+++..+..+|+.++.+++..+.+++    .|..   .++..+.   .+   .+...
T Consensus        49 ~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~---~~~~~  121 (233)
T 2gpy_A           49 LLKMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDA---LQ---LGEKL  121 (233)
T ss_dssp             HHHHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCG---GG---SHHHH
T ss_pred             HHhccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH---HH---HHHhc
Confidence            3445688999999998 58888889988743499999999988877655    3542   2232221   22   12222


Q ss_pred             cCCCCccEEEEcCCC---hHHHHHHHHHhccCCcEEEEE
Q 043260          264 THGTGVDYGFECTGV---ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       264 ~~~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      .....||+|+.....   ...+..+.+.|+++ |++++.
T Consensus       122 ~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~  159 (233)
T 2gpy_A          122 ELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPG-GLILSD  159 (233)
T ss_dssp             TTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEE-EEEEEE
T ss_pred             ccCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEE
Confidence            212369999987654   35678889999998 999886

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.16  E-value=0.00075  Score=58.57  Aligned_cols=105  Identities=18%  Similarity=0.133  Sum_probs=70.8

Q ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhcC
Q 043260          191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      .....++++||-+|+|. |..+..+++..+ ..+|+.++.+++..+.+++    .|.+.-+....   .+..+.+.++..
T Consensus        55 l~~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~~~~~~~~  130 (239)
T 2hnk_A           55 LTKISGAKRIIEIGTFT-GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKL---GSALETLQVLID  130 (239)
T ss_dssp             HHHHHTCSEEEEECCTT-CHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHH
T ss_pred             HHHhhCcCEEEEEeCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE---CCHHHHHHHHHh
Confidence            34456789999999984 888889999874 3499999999988876654    35432111111   223333333211


Q ss_pred             -------------C-CCccEEEEcCCCh---HHHHHHHHHhccCCcEEEEEc
Q 043260          266 -------------G-TGVDYGFECTGVA---SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       266 -------------~-~g~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~G  300 (332)
                                   . ..||+|+......   ..+..+.+.|+++ |.+++--
T Consensus       131 ~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  181 (239)
T 2hnk_A          131 SKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPG-GLLIADN  181 (239)
T ss_dssp             CSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             hcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence                         1 3799999876654   4568899999998 9988754

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.16  E-value=0.0033  Score=54.81  Aligned_cols=78  Identities=15%  Similarity=0.231  Sum_probs=52.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH---cCCCe-ee--CCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA---FGMTD-FI--NPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~---lga~~-v~--~~~~~~~~~~~~~~~---~~~  264 (332)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ ++   .|... .+  |..+  .+++.+.+.   +..
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVAD--RQGVDAAVASTVEAL   82 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4688999998 9999999999999999 999999998776543 22   34332 22  3332  233333333   222


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  ++|++|+++|.
T Consensus        83 g--~id~lv~nAg~   94 (247)
T 2jah_A           83 G--GLDILVNNAGI   94 (247)
T ss_dssp             S--CCSEEEECCCC
T ss_pred             C--CCCEEEECCCC
Confidence            2  58999999873

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.16  E-value=0.0027  Score=55.86  Aligned_cols=105  Identities=12%  Similarity=0.217  Sum_probs=65.8

Q ss_pred             CCCEEEEECC-Ch--HHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCC-C-eee--CCCCCCCchHHHHHHHhc
Q 043260          196 KGSSVAVFGL-GA--VGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGM-T-DFI--NPDDEPNKSISELVKEMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~--vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga-~-~v~--~~~~~~~~~~~~~~~~~~  264 (332)
                      .|+++||+|+ |.  +|.++++.+...|+ +|++++++++..+.++    +.+. . .++  |..+  .+++.+.+.+..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~   82 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTN--DAEIETCFASIK   82 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSS--SHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCC--HHHHHHHHHHHH
Confidence            5788999987 66  99999999999999 8999998876554433    3333 1 222  3332  344443333321


Q ss_pred             CC-CCccEEEEcCCChH-----------------------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          265 HG-TGVDYGFECTGVAS-----------------------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       265 ~~-~g~d~vid~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .. ..+|++|+++|...                             .++.++..++++ |+++.+++...
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-g~iv~isS~~~  151 (266)
T 3oig_A           83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEG-GSIVTLTYLGG  151 (266)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTC-EEEEEEECGGG
T ss_pred             HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCC-ceEEEEecccc
Confidence            11 15899999987321                             122334445556 99999987554

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.16  E-value=0.0016  Score=57.85  Aligned_cols=79  Identities=19%  Similarity=0.131  Sum_probs=53.6

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCC-eee--CCCCCCCchHHHHHH---HhcCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMT-DFI--NPDDEPNKSISELVK---EMTHG  266 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~-~v~--~~~~~~~~~~~~~~~---~~~~~  266 (332)
                      ..++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ ++++.. ..+  |..+  .++..+.+.   +..+ 
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g-  101 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIGDDALCVPTDVTD--PDSVRALFTATVEKFG-  101 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEEEECCTTS--HHHHHHHHHHHHHHHS-
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEecCCC--HHHHHHHHHHHHHHcC-
Confidence            35788999998 9999999999999999 999999998877644 455532 222  3332  233333332   2232 


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                       ++|++|+++|.
T Consensus       102 -~iD~lVnnAg~  112 (272)
T 4dyv_A          102 -RVDVLFNNAGT  112 (272)
T ss_dssp             -CCCEEEECCCC
T ss_pred             -CCCEEEECCCC
Confidence             58999999884

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.15  E-value=0.0028  Score=56.74  Aligned_cols=102  Identities=17%  Similarity=0.169  Sum_probs=65.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH-HH----HHHcCCCee-e--CCCCCCCchHHHHH---HHh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK-DK----GEAFGMTDF-I--NPDDEPNKSISELV---KEM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~-~~----~~~lga~~v-~--~~~~~~~~~~~~~~---~~~  263 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++.++. +.    .++.|.... +  |..+  .+++.+.+   .+.
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSD--EQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            5789999998 9999999999999999 899998876532 22    233454422 2  3332  23333323   233


Q ss_pred             cCCCCccEEEEcCCCh-----------H---------------HHHHHHHHhccCCcEEEEEcCCC
Q 043260          264 THGTGVDYGFECTGVA-----------S---------------LISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .+  ++|++|+++|..           +               .++.++..++++ |+++.+++..
T Consensus       123 ~g--~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~iv~isS~~  185 (291)
T 3ijr_A          123 LG--SLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQG-DVIINTASIV  185 (291)
T ss_dssp             HS--SCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTT-CEEEEECCTH
T ss_pred             cC--CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CEEEEEechH
Confidence            32  589999987731           1               123344455566 8999998754

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.15  E-value=0.00036  Score=60.47  Aligned_cols=102  Identities=16%  Similarity=0.160  Sum_probs=71.0

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhc
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      .+...+.++++||.+|+| .|..+..+++..+ .+|++++.+++..+.+++    .|.+.+-...    .+.   ...+.
T Consensus        84 ~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~----~d~---~~~~~  154 (235)
T 1jg1_A           84 LEIANLKPGMNILEVGTG-SGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVIL----GDG---SKGFP  154 (235)
T ss_dssp             HHHHTCCTTCCEEEECCT-TSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE----SCG---GGCCG
T ss_pred             HHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE----CCc---ccCCC
Confidence            355678899999999998 5888999999887 499999999988776654    4543221111    111   01112


Q ss_pred             CCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEc
Q 043260          265 HGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       265 ~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ....||+|+.+..-......+.+.|+++ |++++.-
T Consensus       155 ~~~~fD~Ii~~~~~~~~~~~~~~~L~pg-G~lvi~~  189 (235)
T 1jg1_A          155 PKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIPV  189 (235)
T ss_dssp             GGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             CCCCccEEEECCcHHHHHHHHHHhcCCC-cEEEEEE
Confidence            2225999998877655567889999998 9877654

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.15  E-value=0.0025  Score=57.19  Aligned_cols=104  Identities=17%  Similarity=0.233  Sum_probs=67.4

Q ss_pred             CCCCEEEEECC-Ch--HHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCeee--CCCCCCCchHHHHHH---H
Q 043260          195 EKGSSVAVFGL-GA--VGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDFI--NPDDEPNKSISELVK---E  262 (332)
Q Consensus       195 ~~g~~vlV~G~-g~--vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v~--~~~~~~~~~~~~~~~---~  262 (332)
                      -.|+++||+|+ |.  +|.++++.+...|+ +|++++++++..+.+    ++.+....+  |..+  .+++.+.+.   +
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVAD--AASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCC--HHHHHHHHHHHHH
Confidence            46789999987 66  99999999999999 899999886544333    333432332  3332  233333333   2


Q ss_pred             hcCCCCccEEEEcCCChH-----------------------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          263 MTHGTGVDYGFECTGVAS-----------------------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ..+  ++|++|+++|...                             ..+.++..+.++ |+++.+++...
T Consensus       106 ~~g--~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~Iv~isS~~~  173 (293)
T 3grk_A          106 KWG--KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG-GSILTLTYYGA  173 (293)
T ss_dssp             HTS--CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC-EEEEEEECGGG
T ss_pred             hcC--CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CEEEEEeehhh
Confidence            222  5999999988420                             233455566676 99999987553

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.14  E-value=0.0018  Score=56.95  Aligned_cols=80  Identities=18%  Similarity=0.243  Sum_probs=53.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc-----CCC-eee--CCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF-----GMT-DFI--NPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l-----ga~-~v~--~~~~~~~~~~~~~~~~~~~  265 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +++     +.. ..+  |..+  .+++.+.+.+...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   82 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE--PGDIDRLFEKARD   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4688999998 9999999999999999 999999988776533 222     312 222  3332  3344444443332


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      ..++|++|+++|.
T Consensus        83 ~~gid~lv~~Ag~   95 (260)
T 2z1n_A           83 LGGADILVYSTGG   95 (260)
T ss_dssp             TTCCSEEEECCCC
T ss_pred             hcCCCEEEECCCC
Confidence            3349999999883

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.14  E-value=0.004  Score=54.94  Aligned_cols=77  Identities=17%  Similarity=0.155  Sum_probs=51.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---HcC--CC-eee--CCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-E---AFG--MT-DFI--NPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~---~lg--a~-~v~--~~~~~~~~~~~~~~~~~~~  265 (332)
                      .|+++||+|+ |++|.+.++.+...|+ +|+++++++++.+.. +   +.+  .. ..+  |..+   .+..+.+.+..+
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~g   84 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT---EQGCQDVIEKYP   84 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS---HHHHHHHHHHCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC---HHHHHHHHHhcC
Confidence            5788999998 9999999999999999 999999998776532 2   222  21 112  3332   333333333332


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                        +.|++|+++|.
T Consensus        85 --~id~lv~nAg~   95 (267)
T 3t4x_A           85 --KVDILINNLGI   95 (267)
T ss_dssp             --CCSEEEECCCC
T ss_pred             --CCCEEEECCCC
Confidence              59999999884

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.14  E-value=0.0036  Score=52.97  Aligned_cols=94  Identities=12%  Similarity=0.271  Sum_probs=64.3

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .+|||+|+ |.+|..+++.+...|. +|+++++++++.+.+. .+...+. |..+   .+. +.   +   .++|+||++
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~~~~~D~~d---~~~-~~---~---~~~d~vi~~   68 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDINILQKDIFD---LTL-SD---L---SDQNVVVDA   68 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSEEEECCGGG---CCH-HH---H---TTCSEEEEC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCeEEeccccC---hhh-hh---h---cCCCEEEEC
Confidence            36999998 9999999999999998 9999999987766543 2333221 2222   111 22   2   268999999


Q ss_pred             CCCh--------HHHHHHHHHhccC-CcEEEEEcCCC
Q 043260          276 TGVA--------SLISEALEATKLG-KGKVMAIGAAN  303 (332)
Q Consensus       276 ~g~~--------~~~~~~~~~l~~~-~G~~v~~G~~~  303 (332)
                      +|..        .....+++.++.. .++++.+++..
T Consensus        69 ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~  105 (221)
T 3ew7_A           69 YGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAA  105 (221)
T ss_dssp             CCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred             CcCCccccchHHHHHHHHHHHHHhcCCceEEEEecce
Confidence            9863        2345666666654 26889887654

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.13  E-value=0.0035  Score=55.29  Aligned_cols=103  Identities=19%  Similarity=0.284  Sum_probs=66.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCC-eee--CCCCCCCchHHHHHHH---hcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMT-DFI--NPDDEPNKSISELVKE---MTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~-~v~--~~~~~~~~~~~~~~~~---~~~~~  267 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.. ..+  |..+  .+++.+.+.+   ..+  
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g--   79 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD--PKAVEAVFAEALEEFG--   79 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS--HHHHHHHHHHHHHHHS--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC--HHHHHHHHHHHHHHcC--
Confidence            4688999998 9999999999999999 999999998877644 444422 122  3332  2333333322   222  


Q ss_pred             CccEEEEcCCCh----------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          268 GVDYGFECTGVA----------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       268 g~d~vid~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .+|++|++.|..          +               ..+.++..++.. |+++.+++...
T Consensus        80 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~~  140 (263)
T 2a4k_A           80 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG-GSLVLTGSVAG  140 (263)
T ss_dssp             CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT-CEEEEECCCTT
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CEEEEEecchh
Confidence            589999998741          0               122333344335 89999987653

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.12  E-value=0.0054  Score=54.73  Aligned_cols=88  Identities=16%  Similarity=0.238  Sum_probs=63.4

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      .+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|....        .+..+.+.      ..|+||.++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~~~~------~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAERA--------ATPCEVVE------SCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC--------SSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec--------CCHHHHHh------cCCEEEEEcC
Confidence            579999999999999999999998 99999999999888877765321        22333332      3689999988


Q ss_pred             ChHHHHHHH-------HHhccCCcEEEEEcC
Q 043260          278 VASLISEAL-------EATKLGKGKVMAIGA  301 (332)
Q Consensus       278 ~~~~~~~~~-------~~l~~~~G~~v~~G~  301 (332)
                      ++..+...+       ..++++ ..++..+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~-~~vi~~st   96 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEG-RGYVDMST   96 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTT-CEEEECSC
T ss_pred             CHHHHHHHHcCcchHhhcCCCC-CEEEeCCC
Confidence            654444444       455665 56665543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.12  E-value=0.0066  Score=52.99  Aligned_cols=81  Identities=12%  Similarity=0.078  Sum_probs=53.1

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-H---cCC-C-ee--eCCCCCCCchHHHHHH---H
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-A---FGM-T-DF--INPDDEPNKSISELVK---E  262 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~---lga-~-~v--~~~~~~~~~~~~~~~~---~  262 (332)
                      -.|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. +   .+. . ..  .|....+.++..+.+.   +
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence            46789999998 9999999999999999 9999999988765432 2   121 1 22  2321111233333333   3


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      ..+  +.|++|+++|.
T Consensus        89 ~~g--~id~lv~nAg~  102 (252)
T 3f1l_A           89 NYP--RLDGVLHNAGL  102 (252)
T ss_dssp             HCS--CCSEEEECCCC
T ss_pred             hCC--CCCEEEECCcc
Confidence            222  58999999884

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.12  E-value=0.0031  Score=55.54  Aligned_cols=79  Identities=19%  Similarity=0.196  Sum_probs=54.3

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHH---Hh
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~---~~  263 (332)
                      -.|+++||+|+ +++|.+.++.+...|+ +|++++++.++.+.+    ++.|... .+  |..+  .++..+.+.   +.
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   85 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITD--DAQVAHLVDETMKA   85 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            46789999998 9999999999999999 999999998876543    2334332 22  3332  233333333   22


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  +.|++|+++|.
T Consensus        86 ~g--~id~lv~nAg~   98 (264)
T 3ucx_A           86 YG--RVDVVINNAFR   98 (264)
T ss_dssp             TS--CCSEEEECCCS
T ss_pred             cC--CCcEEEECCCC
Confidence            22  58999999864

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.11  E-value=0.0025  Score=57.26  Aligned_cols=79  Identities=18%  Similarity=0.287  Sum_probs=53.3

Q ss_pred             CCCCEEEEECC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCeee--CCCCCCCchHHHHHH---H
Q 043260          195 EKGSSVAVFGL-G--AVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDFI--NPDDEPNKSISELVK---E  262 (332)
Q Consensus       195 ~~g~~vlV~G~-g--~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v~--~~~~~~~~~~~~~~~---~  262 (332)
                      -.|+++||+|+ |  ++|.++++.+...|+ +|++++++++..+.+    ++.+....+  |..+  .+++.+.+.   +
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~  104 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSD--AESVDNMFKVLAE  104 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCC--HHHHHHHHHHHHH
Confidence            35789999998 5  999999999999999 899999987655433    334543333  3332  233333333   2


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      ..+  ++|++|+++|.
T Consensus       105 ~~g--~iD~lVnnAG~  118 (296)
T 3k31_A          105 EWG--SLDFVVHAVAF  118 (296)
T ss_dssp             HHS--CCSEEEECCCC
T ss_pred             HcC--CCCEEEECCCc
Confidence            222  58999999884

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.11  E-value=0.0052  Score=54.43  Aligned_cols=102  Identities=24%  Similarity=0.323  Sum_probs=65.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHHH----HHHcCCCee-e--CCCCCCCchHHHHHH---Hh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP-CRKDK----GEAFGMTDF-I--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~-~~~~~----~~~lga~~v-~--~~~~~~~~~~~~~~~---~~  263 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++. ++.+.    +++.|.... +  |..+  .+++.+.+.   +.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRD--AEAIEQAIRETVEA  106 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            5789999998 9999999999999999 888885543 44332    233454422 2  3322  233333333   22


Q ss_pred             cCCCCccEEEEcCCCh-------------------------HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          264 THGTGVDYGFECTGVA-------------------------SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .+  ++|++|+++|..                         ..++.++..++++ |+++.+++..
T Consensus       107 ~g--~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-g~iv~isS~~  168 (271)
T 3v2g_A          107 LG--GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG-GRIITIGSNL  168 (271)
T ss_dssp             HS--CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCGG
T ss_pred             cC--CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CEEEEEeChh
Confidence            32  589999998741                         1234455566676 9999997743

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.11  E-value=0.0036  Score=56.39  Aligned_cols=79  Identities=19%  Similarity=0.276  Sum_probs=54.3

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-e--eCCCCCCCchHHHHHH---Hh
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-F--INPDDEPNKSISELVK---EM  263 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~~~---~~  263 (332)
                      -.|+++||+|+ |++|.++++.+...|+ +|++++++.++.+.+    ++.+... .  .|..+  .+++.+.+.   +.
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRH--LDEMVRLADEAFRL  105 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHh
Confidence            36789999998 9999999999999999 999999998876543    2234432 2  23332  233333333   22


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus       106 ~g--~id~lvnnAg~  118 (301)
T 3tjr_A          106 LG--GVDVVFSNAGI  118 (301)
T ss_dssp             HS--SCSEEEECCCC
T ss_pred             CC--CCCEEEECCCc
Confidence            22  59999999883

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.11  E-value=0.0073  Score=47.10  Aligned_cols=77  Identities=21%  Similarity=0.226  Sum_probs=53.4

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      +.+|+|+|+|.+|...++.+...|. +|+++++++++.+.+++ +|...+. .+.   .+. +.+.+. .-.++|+||.+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~-~d~---~~~-~~l~~~-~~~~~d~vi~~   76 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVIN-GDC---TKI-KTLEDA-GIEDADMYIAV   76 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEE-SCT---TSH-HHHHHT-TTTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcEEEE-cCC---CCH-HHHHHc-CcccCCEEEEe
Confidence            4689999999999999999998998 89999999888776653 5654332 111   111 123222 12369999999


Q ss_pred             CCChH
Q 043260          276 TGVAS  280 (332)
Q Consensus       276 ~g~~~  280 (332)
                      ++...
T Consensus        77 ~~~~~   81 (140)
T 1lss_A           77 TGKEE   81 (140)
T ss_dssp             CSCHH
T ss_pred             eCCch
Confidence            99853

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.10  E-value=0.003  Score=55.16  Aligned_cols=78  Identities=23%  Similarity=0.338  Sum_probs=53.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCC-ee--eCCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMT-DF--INPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~-~v--~~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++.. ..  .|..+  .++..+.+.   +..+  
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g--   82 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGDNGKGMALNVTN--PESIEAVLKAITDEFG--   82 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHC--
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceEEEEeCCC--HHHHHHHHHHHHHHcC--
Confidence            5788999998 9999999999999999 999999998877644 334322 12  23333  233333333   2332  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus        83 ~iD~lv~nAg~   93 (248)
T 3op4_A           83 GVDILVNNAGI   93 (248)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            58999999884

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.09  E-value=0.0031  Score=55.64  Aligned_cols=78  Identities=21%  Similarity=0.324  Sum_probs=53.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-H----cCCCe-e--eCCCCCCCchHHHH---HHHh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-A----FGMTD-F--INPDDEPNKSISEL---VKEM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~----lga~~-v--~~~~~~~~~~~~~~---~~~~  263 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++.++.+.+. +    .+... .  .|..+  .++..+.   +.+.
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   95 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE--PDAPAELARRAAEA   95 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS--TTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            5788999998 9999999999999999 8999999987765432 2    34432 2  23333  3333333   3333


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  +.|++|+++|.
T Consensus        96 ~g--~id~lv~nAg~  108 (266)
T 4egf_A           96 FG--GLDVLVNNAGI  108 (266)
T ss_dssp             HT--SCSEEEEECCC
T ss_pred             cC--CCCEEEECCCc
Confidence            33  59999999884

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.08  E-value=0.0039  Score=55.05  Aligned_cols=103  Identities=20%  Similarity=0.234  Sum_probs=66.7

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC-cchHH----HHHHcCCCee-e--CCCCCCCchHHHHHH---H
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN-PCRKD----KGEAFGMTDF-I--NPDDEPNKSISELVK---E  262 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~-~~~~~----~~~~lga~~v-~--~~~~~~~~~~~~~~~---~  262 (332)
                      -.|+++||+|+ +++|.++++.+...|+ +|++++++ .++.+    .+++.|.+.. +  |..+  .+++.+.+.   +
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   92 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQ--VPEIVKLFDQAVA   92 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHH
Confidence            35788999998 9999999999999999 88887654 34333    2334454422 2  3322  233333333   2


Q ss_pred             hcCCCCccEEEEcCCCh-------------------------HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGVA-------------------------SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ..+  +.|++|+++|..                         ...+.++..+.++ |+++.+++..
T Consensus        93 ~~g--~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~  155 (270)
T 3is3_A           93 HFG--HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG-GRIVLTSSNT  155 (270)
T ss_dssp             HHS--CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCTT
T ss_pred             HcC--CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CeEEEEeCch
Confidence            222  589999998841                         1234556667777 9999998765

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.08  E-value=0.0035  Score=54.21  Aligned_cols=77  Identities=14%  Similarity=0.236  Sum_probs=51.4

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      ++++||+|+ |++|.++++.+...|+ +|+++++++++  ..+++|...+ .|..+.....+.+.+.+..+  ++|++|+
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~g--~id~lv~   76 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGAVPLPTDLEKDDPKGLVKRALEALG--GLHVLVH   76 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTCEEEECCTTTSCHHHHHHHHHHHHT--SCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCcEEEecCCchHHHHHHHHHHHHHcC--CCCEEEE
Confidence            578999998 9999999999999998 99999998776  3445563222 13222111223333333332  5999999


Q ss_pred             cCCC
Q 043260          275 CTGV  278 (332)
Q Consensus       275 ~~g~  278 (332)
                      +.|.
T Consensus        77 ~Ag~   80 (239)
T 2ekp_A           77 AAAV   80 (239)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9873

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.06  E-value=0.0024  Score=56.08  Aligned_cols=91  Identities=12%  Similarity=0.168  Sum_probs=57.4

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc-------------------chHHHH----HHcCCC-eeeCCCCCC
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP-------------------CRKDKG----EAFGMT-DFINPDDEP  252 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~-------------------~~~~~~----~~lga~-~v~~~~~~~  252 (332)
                      +.+|+|+|+|++|..+++.+...|..+|+++|.+.                   .|.+.+    +++..+ .+.......
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~  110 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALL  110 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccC
Confidence            47899999999999999999999998999999887                   565543    222222 221111100


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccC
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLG  292 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~  292 (332)
                      ..   +.+.++..  ++|+||+++.+...-..+.+.+...
T Consensus       111 ~~---~~~~~~~~--~~DvVi~~~d~~~~~~~l~~~~~~~  145 (249)
T 1jw9_B          111 DD---AELAALIA--EHDLVLDCTDNVAVRNQLNAGCFAA  145 (249)
T ss_dssp             CH---HHHHHHHH--TSSEEEECCSSHHHHHHHHHHHHHH
T ss_pred             CH---hHHHHHHh--CCCEEEEeCCCHHHHHHHHHHHHHc
Confidence            11   12222222  5999999999875544444444433

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.06  E-value=0.0053  Score=53.92  Aligned_cols=78  Identities=22%  Similarity=0.290  Sum_probs=52.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH---cCCCe-ee--CCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA---FGMTD-FI--NPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~---lga~~-v~--~~~~~~~~~~~~~~~---~~~  264 (332)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ ++   .|... .+  |..+  .+++.+.+.   +..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS--EEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHh
Confidence            5788999998 9999999999999999 999999988776543 22   24332 22  3332  233333232   222


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  ++|++|+++|.
T Consensus        83 g--~id~lv~nAg~   94 (262)
T 1zem_A           83 G--KIDFLFNNAGY   94 (262)
T ss_dssp             S--CCCEEEECCCC
T ss_pred             C--CCCEEEECCCC
Confidence            2  58999999873

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.05  E-value=0.0037  Score=54.63  Aligned_cols=77  Identities=23%  Similarity=0.265  Sum_probs=50.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH---HHcCCCe-ee--CCCCCCCchHHHHHH---HhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG---EAFGMTD-FI--NPDDEPNKSISELVK---EMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~---~~lga~~-v~--~~~~~~~~~~~~~~~---~~~~  265 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++++ .+..   ++.|... .+  |..+  .+++.+.+.   +..+
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~-~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g   78 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP-APALAEIARHGVKAVHHPADLSD--VAQIEALFALAEREFG   78 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC-HHHHHHHHTTSCCEEEECCCTTS--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch-HHHHHHHHhcCCceEEEeCCCCC--HHHHHHHHHHHHHHcC
Confidence            4678999998 9999999999999999 9999998876 2222   3334432 22  2222  233333333   2222


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                        ++|++|+++|.
T Consensus        79 --~id~lv~~Ag~   89 (255)
T 2q2v_A           79 --GVDILVNNAGI   89 (255)
T ss_dssp             --SCSEEEECCCC
T ss_pred             --CCCEEEECCCC
Confidence              58999999873

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.05  E-value=0.0041  Score=52.80  Aligned_cols=93  Identities=15%  Similarity=0.282  Sum_probs=63.7

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      +|||+|+ |.+|..+++.+...|. +|+++++++++.+.+...+...+. |..+   .+. +   .+   .++|+||+++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~D~~d---~~~-~---~~---~~~d~vi~~a   70 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVATLVKEPLV---LTE-A---DL---DSVDAVVDAL   70 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEEEECCGGG---CCH-H---HH---TTCSEEEECC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceEEeccccc---ccH-h---hc---ccCCEEEECC
Confidence            6999998 9999999999999998 999999998877655433443322 3222   111 1   12   2689999999


Q ss_pred             CCh----------HHHHHHHHHhccCCcEEEEEcCC
Q 043260          277 GVA----------SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       277 g~~----------~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +..          .....+++.++..+++++.+++.
T Consensus        71 g~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           71 SVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             CCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             ccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            862          22345666666554789988653

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.05  E-value=0.0052  Score=56.63  Aligned_cols=105  Identities=19%  Similarity=0.239  Sum_probs=67.5

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-----------HHHHHHcCCCee---eCCCCCCCchHHHH
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR-----------KDKGEAFGMTDF---INPDDEPNKSISEL  259 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~-----------~~~~~~lga~~v---~~~~~~~~~~~~~~  259 (332)
                      -.|+++||+|+ +++|.++++.+...|+ +|+++++++++           .+.+++.|....   .|..+  .+++.+.
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d--~~~v~~~  119 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRD--EQQISAA  119 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHH
Confidence            35789999998 9999999999999999 99999988764           223344454322   23333  2333333


Q ss_pred             HH---HhcCCCCccEEEEcCCCh----------H---------------HHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          260 VK---EMTHGTGVDYGFECTGVA----------S---------------LISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       260 ~~---~~~~~~g~d~vid~~g~~----------~---------------~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      +.   +..+  ++|++|+++|..          +               ..+.++..+++. .|+++.+++...
T Consensus       120 ~~~~~~~~g--~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~  191 (346)
T 3kvo_A          120 VEKAIKKFG--GIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLN  191 (346)
T ss_dssp             HHHHHHHHS--CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCC
T ss_pred             HHHHHHHcC--CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence            33   2232  699999999841          1               123344444433 289999987664

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.05  E-value=0.001  Score=56.39  Aligned_cols=102  Identities=20%  Similarity=0.245  Sum_probs=71.2

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHH----cCCCe--eeCCCCCCCchHHHHHH
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEA----FGMTD--FINPDDEPNKSISELVK  261 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~~~  261 (332)
                      .+...+.++++||.+|+|. |..+..+++..|. .+|+.++.+++..+.+++    .|.+.  ++..+      ...   
T Consensus        70 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d------~~~---  139 (215)
T 2yxe_A           70 CELLDLKPGMKVLEIGTGC-GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGD------GTL---  139 (215)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC------GGG---
T ss_pred             HHhhCCCCCCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC------ccc---
Confidence            3556788999999999984 8888899988862 399999999988877654    34332  22111      100   


Q ss_pred             HhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcC
Q 043260          262 EMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      .......||+|+.+.........+.+.|+++ |++++.-.
T Consensus       140 ~~~~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~lv~~~~  178 (215)
T 2yxe_A          140 GYEPLAPYDRIYTTAAGPKIPEPLIRQLKDG-GKLLMPVG  178 (215)
T ss_dssp             CCGGGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred             CCCCCCCeeEEEECCchHHHHHHHHHHcCCC-cEEEEEEC
Confidence            1111236999999877654557889999998 98887643

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.05  E-value=0.0028  Score=54.97  Aligned_cols=78  Identities=18%  Similarity=0.299  Sum_probs=52.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCC--C-eee--CCCCCCCchHHHHHHH---hcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGM--T-DFI--NPDDEPNKSISELVKE---MTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga--~-~v~--~~~~~~~~~~~~~~~~---~~~  265 (332)
                      +++++||+|+ |++|..+++.+...|+ +|++++++.++.+.. +++..  . .++  |..+  .+++.+.+.+   ..+
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   81 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD--EDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence            4678999998 9999999999999999 899999988766543 33321  1 222  3322  2333333322   222


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                        .+|++|+++|.
T Consensus        82 --~id~li~~Ag~   92 (251)
T 1zk4_A           82 --PVSTLVNNAGI   92 (251)
T ss_dssp             --SCCEEEECCCC
T ss_pred             --CCCEEEECCCC
Confidence              58999999873

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.04  E-value=0.0044  Score=54.60  Aligned_cols=78  Identities=15%  Similarity=0.097  Sum_probs=52.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-H----cCCC--ee--eCCCCCCCchHHHHH---HH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-A----FGMT--DF--INPDDEPNKSISELV---KE  262 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~----lga~--~v--~~~~~~~~~~~~~~~---~~  262 (332)
                      .++++||+|+ +++|.++++.+...|+ +|++++++.++.+.+. +    .+..  ..  .|..+  .++..+.+   .+
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   83 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD--ALQVRAFAEACER   83 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCC--HHHHHHHHHHHHH
Confidence            5788999998 9999999999999999 8999999988765432 2    3332  12  23332  23333322   23


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      ..+  +.|++|+++|.
T Consensus        84 ~~g--~id~lvnnAg~   97 (265)
T 3lf2_A           84 TLG--CASILVNNAGQ   97 (265)
T ss_dssp             HHC--SCSEEEECCCC
T ss_pred             HcC--CCCEEEECCCC
Confidence            332  58999999984

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.04  E-value=0.0041  Score=54.56  Aligned_cols=78  Identities=22%  Similarity=0.325  Sum_probs=51.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHH-HHc----CCCe-ee--CCCCCCCchHHHHHH---H
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR-KDKG-EAF----GMTD-FI--NPDDEPNKSISELVK---E  262 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~-~~~~-~~l----ga~~-v~--~~~~~~~~~~~~~~~---~  262 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++ .+.+ +++    |... .+  |..+  .+++.+.+.   +
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   79 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK--GEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4678999998 9999999999999999 89999998776 5432 222    5432 22  2222  233333333   2


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      ..+  ++|++|+++|.
T Consensus        80 ~~g--~iD~lv~~Ag~   93 (260)
T 1x1t_A           80 QMG--RIDILVNNAGI   93 (260)
T ss_dssp             HHS--CCSEEEECCCC
T ss_pred             hcC--CCCEEEECCCC
Confidence            222  58999999873

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.04  E-value=0.0035  Score=57.92  Aligned_cols=97  Identities=24%  Similarity=0.261  Sum_probs=64.1

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC------C--CC---c-hH-HHHHH
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD------E--PN---K-SI-SELVK  261 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~------~--~~---~-~~-~~~~~  261 (332)
                      -+|++|+|+|.|.+|+.++++++.+|+ +|++.|.+.++.+.++++|++.+ +..+      +  .+   . .+ .+.+.
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~  250 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVAR  250 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHh
Confidence            578999999999999999999999999 99999988777666777776433 1100      0  00   0 00 11122


Q ss_pred             HhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEE
Q 043260          262 EMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMA  298 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~  298 (332)
                      .+    +.++|++++..+.+.+++.+.|..+ |.++.
T Consensus       251 ~l----k~~iVie~AN~p~t~~eA~~~L~~~-gIlv~  282 (355)
T 1c1d_A          251 TL----DCSVVAGAANNVIADEAASDILHAR-GILYA  282 (355)
T ss_dssp             HC----CCSEECCSCTTCBCSHHHHHHHHHT-TCEEC
T ss_pred             hC----CCCEEEECCCCCCCCHHHHHHHHhC-CEEEE
Confidence            22    4677777777653334666777776 66654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.03  E-value=0.0056  Score=54.87  Aligned_cols=105  Identities=16%  Similarity=0.123  Sum_probs=65.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcc--hHH----HHHHcCCCeeeCCCCC-CCchHHH---HHHHhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPC--RKD----KGEAFGMTDFINPDDE-PNKSISE---LVKEMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~--~~~----~~~~lga~~v~~~~~~-~~~~~~~---~~~~~~  264 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++.+  +.+    .+++.|....+..-+. +.++..+   .+.+..
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5789999998 9999999999999999 8999887632  222    2334454433222221 1222222   222333


Q ss_pred             CCCCccEEEEcCCCh-----------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          265 HGTGVDYGFECTGVA-----------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       265 ~~~g~d~vid~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      +  ++|++|++.|..           +               ..+.++..+.++ |+++.+++...
T Consensus       127 g--~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~Iv~isS~~~  189 (294)
T 3r3s_A          127 G--GLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKG-ASIITTSSIQA  189 (294)
T ss_dssp             T--CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCGGG
T ss_pred             C--CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC-CEEEEECChhh
Confidence            3  589999998841           0               123334455566 99999987654

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.03  E-value=0.0042  Score=54.60  Aligned_cols=79  Identities=15%  Similarity=0.167  Sum_probs=53.9

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHH---Hh
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~---~~  263 (332)
                      -.++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+    ++.+... ++  |..+  .+++.+.+.   +.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSH--SDAIAAFATGVLAA  103 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCC--HHHHHHHHHHHHHh
Confidence            35789999998 9999999999999999 899999998876543    2334332 22  3332  233333332   22


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  .+|++|+++|.
T Consensus       104 ~g--~id~lv~~Ag~  116 (262)
T 3rkr_A          104 HG--RCDVLVNNAGV  116 (262)
T ss_dssp             HS--CCSEEEECCCC
T ss_pred             cC--CCCEEEECCCc
Confidence            22  58999999885

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.03  E-value=0.00086  Score=58.73  Aligned_cols=106  Identities=9%  Similarity=0.141  Sum_probs=71.4

Q ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhcCC
Q 043260          192 FKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       192 ~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~~~  266 (332)
                      ....++++||-+|+|. |..+..+++..+ ..+|+.+|.+++..+.+++    .|...-+....   .+..+.+..+...
T Consensus        59 ~~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~~l~~~~~~  134 (248)
T 3tfw_A           59 VRLTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE---GPALQSLESLGEC  134 (248)
T ss_dssp             HHHHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHTCCSC
T ss_pred             HhhcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHhcCCC
Confidence            3456789999999976 888888888764 3499999999988876654    35431111111   2333344444333


Q ss_pred             CCccEEEEcCCC---hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          267 TGVDYGFECTGV---ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       267 ~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ..||+|+-....   ...+..+.+.|+++ |.+++-...
T Consensus       135 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~~~~~  172 (248)
T 3tfw_A          135 PAFDLIFIDADKPNNPHYLRWALRYSRPG-TLIIGDNVV  172 (248)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEECCS
T ss_pred             CCeEEEEECCchHHHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence            479999954433   24678889999998 988876543

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.02  E-value=0.0047  Score=53.06  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=66.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCeee--CCCCCCCchHHHHHH---HhcCCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDFI--NPDDEPNKSISELVK---EMTHGTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v~--~~~~~~~~~~~~~~~---~~~~~~g  268 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+ ++++....+  |..+  .+++.+.+.   +..+  +
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~--~   78 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVRE--EGDWARAVAAMEEAFG--E   78 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHHHHHHHHS--C
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCC--HHHHHHHHHHHHHHcC--C
Confidence            3568999998 9999999999999999 999999988776644 344322222  3322  233333333   2222  5


Q ss_pred             ccEEEEcCCCh----------H---------------HHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          269 VDYGFECTGVA----------S---------------LISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       269 ~d~vid~~g~~----------~---------------~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      +|++|++.|..          +               ..+.++..+.+. .|+++.+++...
T Consensus        79 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~  140 (234)
T 2ehd_A           79 LSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAG  140 (234)
T ss_dssp             CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTT
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchh
Confidence            89999998731          1               112444444432 289999987654

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.02  E-value=0.0053  Score=56.93  Aligned_cols=95  Identities=12%  Similarity=0.042  Sum_probs=67.8

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      .+|+|+|+|.+|..+++.+.. .. .|.+.+++.++++.+++......+|..+      .+.+.++..  ++|+||++++
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~d------~~~l~~~~~--~~DvVi~~~p   86 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVDASN------FDKLVEVMK--EFELVIGALP   86 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECCTTC------HHHHHHHHT--TCSEEEECCC
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEecCC------HHHHHHHHh--CCCEEEEecC
Confidence            579999999999998888754 34 8999999999888876654333344433      223444433  5899999998


Q ss_pred             ChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          278 VASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       278 ~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ..-....+-.|+..+ -.++.+....
T Consensus        87 ~~~~~~v~~~~~~~g-~~yvD~s~~~  111 (365)
T 3abi_A           87 GFLGFKSIKAAIKSK-VDMVDVSFMP  111 (365)
T ss_dssp             GGGHHHHHHHHHHHT-CEEEECCCCS
T ss_pred             CcccchHHHHHHhcC-cceEeeeccc
Confidence            755556667778876 7888876443

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.02  E-value=0.0027  Score=57.75  Aligned_cols=92  Identities=14%  Similarity=0.226  Sum_probs=64.9

Q ss_pred             CEEEEECCChHHHHHHHHHHH--cCCCeEEEEcCCcch--HHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          198 SSVAVFGLGAVGLGVMDRARI--QGAAKIIGIDKNPCR--KDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~--~G~~~Vi~~~~~~~~--~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      -+|.|+|+|.+|...+..+..  -+.+-+.++++++++  +++++++|.....       .++ +.+.+.++..++|+||
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~-------~~~-e~ll~~~~~~~iDvV~   76 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY-------AGV-EGLIKLPEFADIDFVF   76 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES-------SHH-HHHHHSGGGGGEEEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCccc-------CCH-HHHHhccCCCCCcEEE
Confidence            478999999999998888844  356445567777665  5677788864221       222 2333333335799999


Q ss_pred             EcCCChHHHHHHHHHhcc--CCcEEEE
Q 043260          274 ECTGVASLISEALEATKL--GKGKVMA  298 (332)
Q Consensus       274 d~~g~~~~~~~~~~~l~~--~~G~~v~  298 (332)
                      ++++...+...+.+++..  + .+++.
T Consensus        77 ~atp~~~h~~~a~~al~a~~G-k~Vi~  102 (312)
T 1nvm_B           77 DATSASAHVQNEALLRQAKPG-IRLID  102 (312)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTT-CEEEE
T ss_pred             ECCChHHHHHHHHHHHHhCCC-CEEEE
Confidence            999987778888899988  7 77776

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.02  E-value=0.0052  Score=53.07  Aligned_cols=79  Identities=16%  Similarity=0.183  Sum_probs=52.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ +++....++..+-.+.+++.+.+.   .-.++|++|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~~~id~vi   81 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALG---SVGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHT---TCCCCCEEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHH---HcCCCCEEE
Confidence            5789999998 9999999999999999 999999988776644 334322333222101222222222   112589999


Q ss_pred             EcCCC
Q 043260          274 ECTGV  278 (332)
Q Consensus       274 d~~g~  278 (332)
                      +++|.
T Consensus        82 ~~Ag~   86 (244)
T 3d3w_A           82 NNAAV   86 (244)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99883

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.01  E-value=0.0044  Score=54.90  Aligned_cols=78  Identities=17%  Similarity=0.242  Sum_probs=53.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCC-ee--eCCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMT-DF--INPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~-~v--~~~~~~~~~~~~~~~~---~~~  264 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.|.. ..  .|..+  .+++.+.+.   +..
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVND--ATAVDALVESTLKEF  103 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCC--HHHHHHHHHHHHHHc
Confidence            5788999998 9999999999999999 999999998776533    233432 22  23333  233333332   222


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  +.|++|+++|.
T Consensus       104 g--~iD~lvnnAg~  115 (270)
T 3ftp_A          104 G--ALNVLVNNAGI  115 (270)
T ss_dssp             S--CCCEEEECCCC
T ss_pred             C--CCCEEEECCCC
Confidence            2  58999999883

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.01  E-value=0.0049  Score=54.67  Aligned_cols=103  Identities=18%  Similarity=0.208  Sum_probs=64.6

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC------------cchHHH----HHHcCCCee---eCCCCCCCc
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN------------PCRKDK----GEAFGMTDF---INPDDEPNK  254 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~------------~~~~~~----~~~lga~~v---~~~~~~~~~  254 (332)
                      -.|+++||+|+ |++|.++++.+...|+ +|++++++            .++.+.    +++.+....   .|..+  .+
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~   84 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRD--RA   84 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTC--HH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCC--HH
Confidence            35789999998 9999999999999999 99999886            333332    233444322   23332  23


Q ss_pred             hHHHHHH---HhcCCCCccEEEEcCCCh--------H---------------HHHHHHHHhccCCcEEEEEcCCC
Q 043260          255 SISELVK---EMTHGTGVDYGFECTGVA--------S---------------LISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       255 ~~~~~~~---~~~~~~g~d~vid~~g~~--------~---------------~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +..+.+.   +..+  ++|++|+++|..        +               ..+.++..+.++ |+++.+++..
T Consensus        85 ~v~~~~~~~~~~~g--~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~  156 (287)
T 3pxx_A           85 AVSRELANAVAEFG--KLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSG-ASIITTGSVA  156 (287)
T ss_dssp             HHHHHHHHHHHHHS--CCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCHH
T ss_pred             HHHHHHHHHHHHcC--CCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcC-cEEEEeccch
Confidence            3333332   2222  589999998841        1               122333344555 8999988754

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.01  E-value=0.0063  Score=53.84  Aligned_cols=104  Identities=22%  Similarity=0.263  Sum_probs=65.1

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC------------cchHHH----HHHcCCCee-e--CCCCCCCc
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN------------PCRKDK----GEAFGMTDF-I--NPDDEPNK  254 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~------------~~~~~~----~~~lga~~v-~--~~~~~~~~  254 (332)
                      -.|+++||+|+ |++|.++++.+...|+ +|++++++            .++++.    +++.+.... +  |..+  .+
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~   87 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRD--RE   87 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTC--HH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCC--HH
Confidence            35789999998 9999999999999999 89999876            343332    233454322 2  3322  23


Q ss_pred             hHHHHHH---HhcCCCCccEEEEcCCCh------H---------------HHHHHHHHhcc---CCcEEEEEcCCCC
Q 043260          255 SISELVK---EMTHGTGVDYGFECTGVA------S---------------LISEALEATKL---GKGKVMAIGAANE  304 (332)
Q Consensus       255 ~~~~~~~---~~~~~~g~d~vid~~g~~------~---------------~~~~~~~~l~~---~~G~~v~~G~~~~  304 (332)
                      ++.+.+.   +..+  +.|++|+++|..      +               .++.++..+.+   + |+++.+++...
T Consensus        88 ~v~~~~~~~~~~~g--~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-g~iv~isS~~~  161 (278)
T 3sx2_A           88 SLSAALQAGLDELG--RLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTG-GSIVLISSSAG  161 (278)
T ss_dssp             HHHHHHHHHHHHHC--CCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSC-EEEEEECCGGG
T ss_pred             HHHHHHHHHHHHcC--CCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC-cEEEEEccHHh
Confidence            3333333   2222  589999998842      1               12333444432   4 89999987553

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.00  E-value=0.0021  Score=57.32  Aligned_cols=78  Identities=17%  Similarity=0.227  Sum_probs=51.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-Hc---CCC--eee--CCCCCCCchHHHHH---HHh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AF---GMT--DFI--NPDDEPNKSISELV---KEM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~l---ga~--~v~--~~~~~~~~~~~~~~---~~~  263 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++   +..  ..+  |..+  .+++.+.+   .+.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  108 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD--PDQVAALFAAVRAE  108 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5788999998 9999999999999999 9999999988765432 22   222  222  3332  23333333   233


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus       109 ~g--~iD~lvnnAG~  121 (281)
T 4dry_A          109 FA--RLDLLVNNAGS  121 (281)
T ss_dssp             HS--CCSEEEECCCC
T ss_pred             cC--CCCEEEECCCC
Confidence            32  58999999874

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.99  E-value=0.0049  Score=54.15  Aligned_cols=79  Identities=19%  Similarity=0.180  Sum_probs=51.8

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HHcCCCee-e--CCCCCCCchHHHHHH---H
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGI-DKNPCRKDKG----EAFGMTDF-I--NPDDEPNKSISELVK---E  262 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~-~~~~~~~~~~----~~lga~~v-~--~~~~~~~~~~~~~~~---~  262 (332)
                      ..++++||+|+ |++|.++++.+...|+ +|+++ ++++++.+.+    ++.|.... +  |..+  .+++.+.+.   +
T Consensus         2 ~~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   78 (258)
T 3oid_A            2 EQNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQ--PAKIKEMFQQIDE   78 (258)
T ss_dssp             -CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHH
Confidence            35788999998 9999999999999999 88886 7877765533    23344322 2  3322  233333332   2


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      ..+  ++|++|+++|.
T Consensus        79 ~~g--~id~lv~nAg~   92 (258)
T 3oid_A           79 TFG--RLDVFVNNAAS   92 (258)
T ss_dssp             HHS--CCCEEEECCCC
T ss_pred             HcC--CCCEEEECCCC
Confidence            222  58999999973

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.98  E-value=0.0094  Score=55.38  Aligned_cols=111  Identities=13%  Similarity=0.160  Sum_probs=79.0

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC----cch---------HHHHHHcCCCeeeCCCCCCCchHHHHHH
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN----PCR---------KDKGEAFGMTDFINPDDEPNKSISELVK  261 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~----~~~---------~~~~~~lga~~v~~~~~~~~~~~~~~~~  261 (332)
                      -+..+|+|+|+|..|..+++++..+|.++|+++|++    .+|         .+++++...  .  ..   ..++.+.++
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~--~--~~---~~~L~eav~  262 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP--E--RL---SGDLETALE  262 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT--T--CC---CSCHHHHHT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc--c--Cc---hhhHHHHHc
Confidence            356789999999999999999999999899999998    544         334444321  1  11   144555542


Q ss_pred             HhcCCCCccEEEEcCCChHHH-HHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEe
Q 043260          262 EMTHGTGVDYGFECTGVASLI-SEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGT  323 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~~~~~-~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~  323 (332)
                            ++|++|-+++. ..+ .+.++.++++ -.++.+.++.   .++.+.+... +..|..+
T Consensus       263 ------~ADVlIG~Sap-~l~t~emVk~Ma~~-pIIfalSNPt---~E~~p~~a~~~g~~i~at  315 (388)
T 1vl6_A          263 ------GADFFIGVSRG-NILKPEWIKKMSRK-PVIFALANPV---PEIDPELAREAGAFIVAT  315 (388)
T ss_dssp             ------TCSEEEECSCS-SCSCHHHHTTSCSS-CEEEECCSSS---CSSCHHHHHHTTCSEEEE
T ss_pred             ------cCCEEEEeCCC-CccCHHHHHhcCCC-CEEEEcCCCC---CCCCHHHHHHhcCeEEEe
Confidence                  48999999884 343 6777888887 7777777764   5777777666 5556555

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.98  E-value=0.0066  Score=53.74  Aligned_cols=104  Identities=14%  Similarity=0.204  Sum_probs=65.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-------HH----HHHHcCCCee---eCCCCCCCchHHHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR-------KD----KGEAFGMTDF---INPDDEPNKSISELV  260 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~-------~~----~~~~lga~~v---~~~~~~~~~~~~~~~  260 (332)
                      .|+++||+|+ +++|.++++.+...|+ +|++++++.++       ++    .+++.+....   .|..+  .++..+.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~   81 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIRE--EDQVRAAV   81 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTC--HHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCC--HHHHHHHH
Confidence            5788999998 9999999999999999 99999988753       22    2233344322   23332  23333333


Q ss_pred             H---HhcCCCCccEEEEcCCCh----------H---------------HHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          261 K---EMTHGTGVDYGFECTGVA----------S---------------LISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       261 ~---~~~~~~g~d~vid~~g~~----------~---------------~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      .   +..+  ++|++|+++|..          +               ..+.++..+.+. .|+++.+++...
T Consensus        82 ~~~~~~~g--~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~  152 (274)
T 3e03_A           82 AATVDTFG--GIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPS  152 (274)
T ss_dssp             HHHHHHHS--CCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCC
T ss_pred             HHHHHHcC--CCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHh
Confidence            3   3232  589999999841          1               123344444332 289999987664

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=96.98  E-value=0.0053  Score=54.28  Aligned_cols=103  Identities=19%  Similarity=0.325  Sum_probs=64.7

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HHcCCCee-e--CCCCCCCchHHHHHH---H
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGI-DKNPCRKDKG----EAFGMTDF-I--NPDDEPNKSISELVK---E  262 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~-~~~~~~~~~~----~~lga~~v-~--~~~~~~~~~~~~~~~---~  262 (332)
                      ..++++||+|+ +++|.++++.+...|+ +|+++ .+++++.+.+    ++.|.... +  |..+  .+++.+.+.   +
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  101 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD--PAAVRRLFATAEE  101 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHH
Confidence            45789999998 9999999999999999 88887 4455444432    33454322 2  3332  233333332   3


Q ss_pred             hcCCCCccEEEEcCCCh-------------------------HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGVA-------------------------SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ..+  ++|++|+++|..                         ..++.++..++++ |+++.+++..
T Consensus       102 ~~g--~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~isS~~  164 (267)
T 3u5t_A          102 AFG--GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG-GRIINMSTSQ  164 (267)
T ss_dssp             HHS--CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCTH
T ss_pred             HcC--CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CeEEEEeChh
Confidence            332  599999998842                         1233555566676 9999998754

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.98  E-value=0.0061  Score=53.28  Aligned_cols=77  Identities=19%  Similarity=0.201  Sum_probs=51.8

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---HcCCCe-ee--CCCCCCCchHHHHHH---HhcC
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-E---AFGMTD-FI--NPDDEPNKSISELVK---EMTH  265 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~---~lga~~-v~--~~~~~~~~~~~~~~~---~~~~  265 (332)
                      ++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +   +.|... .+  |..+  .+++.+.+.   +.. 
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~-   77 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD--RDQVFAAVEQARKTL-   77 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHT-
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHh-
Confidence            578999998 9999999999999999 999999988776533 2   234332 22  3332  233333333   222 


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      + ++|++|+++|.
T Consensus        78 g-~id~lv~nAg~   89 (256)
T 1geg_A           78 G-GFDVIVNNAGV   89 (256)
T ss_dssp             T-CCCEEEECCCC
T ss_pred             C-CCCEEEECCCC
Confidence            2 59999999873

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.97  E-value=0.0069  Score=54.80  Aligned_cols=88  Identities=17%  Similarity=0.200  Sum_probs=62.1

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      .+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...        .+..+.+.      ..|+||-++.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~--------~~~~~~~~------~aDvvi~~vp   86 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGASVC--------ESPAEVIK------KCKYTIAMLS   86 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC--------SSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCeEc--------CCHHHHHH------hCCEEEEEcC
Confidence            679999999999999999999998 99999999999888888775321        22333332      3688888887


Q ss_pred             ChHHHHHHH-------HHhccCCcEEEEEcC
Q 043260          278 VASLISEAL-------EATKLGKGKVMAIGA  301 (332)
Q Consensus       278 ~~~~~~~~~-------~~l~~~~G~~v~~G~  301 (332)
                      .+..+...+       ..+.++ ..++..+.
T Consensus        87 ~~~~~~~v~~~~~~l~~~l~~g-~~vv~~st  116 (310)
T 3doj_A           87 DPCAALSVVFDKGGVLEQICEG-KGYIDMST  116 (310)
T ss_dssp             SHHHHHHHHHSTTCGGGGCCTT-CEEEECSC
T ss_pred             CHHHHHHHHhCchhhhhccCCC-CEEEECCC
Confidence            754554444       234444 55555543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.97  E-value=0.0083  Score=53.18  Aligned_cols=78  Identities=18%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC------------cchHH----HHHHcCCCee-e--CCCCCCCch
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN------------PCRKD----KGEAFGMTDF-I--NPDDEPNKS  255 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~------------~~~~~----~~~~lga~~v-~--~~~~~~~~~  255 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++            .++.+    .+++.|.... +  |..+  .++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~   85 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKD--RAA   85 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCC--HHH
Confidence            5789999998 9999999999999999 89999986            33332    2234454322 2  3332  233


Q ss_pred             HHHHHH---HhcCCCCccEEEEcCCC
Q 043260          256 ISELVK---EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       256 ~~~~~~---~~~~~~g~d~vid~~g~  278 (332)
                      ..+.+.   +..+  ++|++|+++|.
T Consensus        86 v~~~~~~~~~~~g--~id~lv~nAg~  109 (281)
T 3s55_A           86 LESFVAEAEDTLG--GIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHHHHHHT--CCCEEEECCCC
T ss_pred             HHHHHHHHHHhcC--CCCEEEECCCC
Confidence            333332   3332  59999999884

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.96  E-value=0.002  Score=56.47  Aligned_cols=80  Identities=14%  Similarity=0.192  Sum_probs=53.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHHhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      .++++||+|+ +++|.++++.+...|+ +|++++++.++.+.+    ++.|... .+  |..+  .+++.+.+.+.....
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARN--EDEVTAFLNAADAHA   82 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCC--HHHHHHHHHHHHhhC
Confidence            5788999998 9999999999999999 999999998876543    2334432 22  3332  233333333221112


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      +.|++|+++|.
T Consensus        83 ~id~lv~nAg~   93 (252)
T 3h7a_A           83 PLEVTIFNVGA   93 (252)
T ss_dssp             CEEEEEECCCC
T ss_pred             CceEEEECCCc
Confidence            69999999984

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.96  E-value=0.0024  Score=55.94  Aligned_cols=79  Identities=25%  Similarity=0.283  Sum_probs=53.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHH---hcCCCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKE---MTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~---~~~~~g~d~  271 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+..+++.. ..+..+-.+.+++.+.+.+   ..+  ++|+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g--~iD~   80 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALG--RVDV   80 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHS--CCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcC--CCCE
Confidence            4688999998 9999999999999998 99999998877444455542 3332221112333333332   222  5899


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      +|+++|.
T Consensus        81 lv~~Ag~   87 (256)
T 2d1y_A           81 LVNNAAI   87 (256)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999873

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.95  E-value=0.0075  Score=53.49  Aligned_cols=79  Identities=27%  Similarity=0.325  Sum_probs=52.1

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC-------------CcchHHHH----HHcCCCee---eCCCCCCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK-------------NPCRKDKG----EAFGMTDF---INPDDEPN  253 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~-------------~~~~~~~~----~~lga~~v---~~~~~~~~  253 (332)
                      -.|+++||+|+ +++|.++++.+...|+ +|+++++             ++++.+.+    ++.|....   .|..+  .
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~   89 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRD--D   89 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC--H
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCC--H
Confidence            46789999998 9999999999999999 9999987             44444432    33343322   23332  2


Q ss_pred             chHHHHHH---HhcCCCCccEEEEcCCC
Q 043260          254 KSISELVK---EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       254 ~~~~~~~~---~~~~~~g~d~vid~~g~  278 (332)
                      +++.+.+.   +..+  +.|++|+++|.
T Consensus        90 ~~v~~~~~~~~~~~g--~id~lvnnAg~  115 (280)
T 3pgx_A           90 AALRELVADGMEQFG--RLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHHHHC--CCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcC--CCCEEEECCCC
Confidence            33333332   2232  58999999884

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.95  E-value=0.0057  Score=55.57  Aligned_cols=80  Identities=23%  Similarity=0.184  Sum_probs=53.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCC--C-eee--CCCCCCCchHHHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGM--T-DFI--NPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga--~-~v~--~~~~~~~~~~~~~~~~~~~  265 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+.    ..+.  . .++  |..+  .+++.+.+.+...
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   83 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS--REGFKMAADEVEA   83 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC--HHHHHHHHHHHHH
Confidence            5789999998 9999999999999999 9999999988765432    2332  2 222  3332  2333333332211


Q ss_pred             -CCCccEEEEcCCC
Q 043260          266 -GTGVDYGFECTGV  278 (332)
Q Consensus       266 -~~g~d~vid~~g~  278 (332)
                       -.++|++|+++|.
T Consensus        84 ~~g~id~lv~nAg~   97 (319)
T 3ioy_A           84 RFGPVSILCNNAGV   97 (319)
T ss_dssp             HTCCEEEEEECCCC
T ss_pred             hCCCCCEEEECCCc
Confidence             1258999999983

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.95  E-value=0.0015  Score=58.97  Aligned_cols=95  Identities=16%  Similarity=0.085  Sum_probs=64.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCCC--eeeCCCCCCCchHHHHHHHhcCCCCccE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGMT--DFINPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga~--~v~~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      -.+++++|+|+|++|.+++..+...|+.+|++++++.+|.+ ++++++..  .+++        + +.+.+..  ..+|+
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~--------~-~~~~~~~--~~aDi  207 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS--------L-AEAETRL--AEYDI  207 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC--------H-HHHHHTG--GGCSE
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee--------H-HHHHhhh--ccCCE
Confidence            36789999999999999999999999879999999988865 55666652  2221        1 1233332  25899


Q ss_pred             EEEcCCChHH-----HHHHHHHhccCCcEEEEEcC
Q 043260          272 GFECTGVASL-----ISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       272 vid~~g~~~~-----~~~~~~~l~~~~G~~v~~G~  301 (332)
                      ||++++....     .......+.++ ..++.+.-
T Consensus       208 vIn~t~~~~~~~~~~~~i~~~~l~~~-~~v~D~~y  241 (297)
T 2egg_A          208 IINTTSVGMHPRVEVQPLSLERLRPG-VIVSDIIY  241 (297)
T ss_dssp             EEECSCTTCSSCCSCCSSCCTTCCTT-CEEEECCC
T ss_pred             EEECCCCCCCCCCCCCCCCHHHcCCC-CEEEEcCC
Confidence            9999986421     00112446665 67777765

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.95  E-value=0.00083  Score=60.85  Aligned_cols=100  Identities=11%  Similarity=0.190  Sum_probs=71.7

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc----CCC---eeeCCCCCCCchHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF----GMT---DFINPDDEPNKSISELV  260 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l----ga~---~v~~~~~~~~~~~~~~~  260 (332)
                      +.+...+.++++||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++..+          +
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d----------~  149 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG----------W  149 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC----------G
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC----------h
Confidence            33556778999999999977 8888888888788 999999999988877653    432   222111          1


Q ss_pred             HHhcCCCCccEEEEc-----CCC---hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          261 KEMTHGTGVDYGFEC-----TGV---ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       261 ~~~~~~~g~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      .++ + ..||+|+..     .+.   ...+..+.+.|+++ |++++.-..
T Consensus       150 ~~~-~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  196 (318)
T 2fk8_A          150 EDF-A-EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQSSV  196 (318)
T ss_dssp             GGC-C-CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEEEE
T ss_pred             HHC-C-CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC-cEEEEEEec
Confidence            122 2 379999986     432   34678889999998 998876543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.95  E-value=0.0075  Score=54.82  Aligned_cols=91  Identities=18%  Similarity=0.261  Sum_probs=64.8

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      ...+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...        .+..+.+      ...|+||.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~--------~~~~e~~------~~aDvVi~~   94 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGATIH--------EQARAAA------RDADIVVSM   94 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCEEE--------SSHHHHH------TTCSEEEEC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCEee--------CCHHHHH------hcCCEEEEE
Confidence            34689999999999999999999998 99999999999888877775322        2222222      147899999


Q ss_pred             CCChHHHHHHH------HHhccCCcEEEEEcCC
Q 043260          276 TGVASLISEAL------EATKLGKGKVMAIGAA  302 (332)
Q Consensus       276 ~g~~~~~~~~~------~~l~~~~G~~v~~G~~  302 (332)
                      +..+..+...+      ..+.++ ..++..+..
T Consensus        95 vp~~~~~~~v~~~~~~~~~l~~~-~~vi~~st~  126 (320)
T 4dll_A           95 LENGAVVQDVLFAQGVAAAMKPG-SLFLDMASI  126 (320)
T ss_dssp             CSSHHHHHHHHTTTCHHHHCCTT-CEEEECSCC
T ss_pred             CCCHHHHHHHHcchhHHhhCCCC-CEEEecCCC
Confidence            88754544443      345565 566666543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.94  E-value=0.0029  Score=56.67  Aligned_cols=75  Identities=21%  Similarity=0.267  Sum_probs=52.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCC----CeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGM----TDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga----~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      -.+++++|+|+|++|.+++..+...|+++|++++++.+|.+ ++++++.    ..+.....   +++.+.+.      .+
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~---~~l~~~l~------~~  195 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA---RGIEDVIA------AA  195 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS---TTHHHHHH------HS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH---HHHHHHHh------cC
Confidence            46889999999999999999999999978999999988876 3344431    11211111   23433332      48


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |+||++++.
T Consensus       196 DiVInaTp~  204 (283)
T 3jyo_A          196 DGVVNATPM  204 (283)
T ss_dssp             SEEEECSST
T ss_pred             CEEEECCCC
Confidence            999999874

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.91  E-value=0.0016  Score=56.54  Aligned_cols=103  Identities=18%  Similarity=0.182  Sum_probs=63.0

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHH---HhcCCCCcc
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVK---EMTHGTGVD  270 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~---~~~~~~g~d  270 (332)
                      ..++++||+|+ |++|.++++.+...|+ +|+++++++++.+     +....+..+-.+.+++.+.+.   +..+..++|
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc-----CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            45788999998 9999999999999998 9999998876532     111122111101122222222   222212699


Q ss_pred             EEEEcCCC--------h---H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          271 YGFECTGV--------A---S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       271 ~vid~~g~--------~---~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ++|+++|.        .   +               ..+.+...+.++ |+++.+++...
T Consensus        79 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-g~iv~isS~~~  137 (241)
T 1dhr_A           79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-GLLTLAGAKAA  137 (241)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGGG
T ss_pred             EEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccC-CEEEEECCHHH
Confidence            99999883        1   0               122334455566 89999987553

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.91  E-value=0.0071  Score=52.81  Aligned_cols=41  Identities=20%  Similarity=0.253  Sum_probs=35.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG  237 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~  237 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQET   47 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            4678999998 9999999999999998 999999988776543

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.91  E-value=0.0035  Score=56.04  Aligned_cols=78  Identities=14%  Similarity=0.219  Sum_probs=55.3

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCe-e--eCCCCCCCchHHHHHHHhcCCCCc
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTD-F--INPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~-v--~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      -.|+++||+|+ |++|.++++.+...|+ +|++++++.++.+.+. +++... .  .|..+  .+++.+.+.+.  + ++
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~--~-~i   87 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAGQVEVRELDLQD--LSSVRRFADGV--S-GA   87 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSSEEEEEECCTTC--HHHHHHHHHTC--C-CE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCeeEEEcCCCC--HHHHHHHHHhc--C-CC
Confidence            36789999998 9999999999999999 9999999988876553 444322 2  23332  23333333333  2 68


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|+++|.
T Consensus        88 D~lv~nAg~   96 (291)
T 3rd5_A           88 DVLINNAGI   96 (291)
T ss_dssp             EEEEECCCC
T ss_pred             CEEEECCcC
Confidence            999999884

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.91  E-value=0.0032  Score=55.46  Aligned_cols=78  Identities=13%  Similarity=0.152  Sum_probs=49.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch---HHH-H---HHcCCCee---eCCCCCCCchHHHHHH---
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR---KDK-G---EAFGMTDF---INPDDEPNKSISELVK---  261 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~---~~~-~---~~lga~~v---~~~~~~~~~~~~~~~~---  261 (332)
                      .|+++||+|+ +++|.++++.+...|+ +|+++++....   .+. .   ++.|....   .|..+  .++..+.+.   
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~   86 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSN--EEEVAKLFDFAE   86 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCS--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHH
Confidence            5789999998 9999999999999999 89998765443   222 2   22343321   23332  233333333   


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +..+  +.|++|+++|.
T Consensus        87 ~~~g--~iD~lvnnAg~  101 (262)
T 3ksu_A           87 KEFG--KVDIAINTVGK  101 (262)
T ss_dssp             HHHC--SEEEEEECCCC
T ss_pred             HHcC--CCCEEEECCCC
Confidence            2222  59999999983

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.91  E-value=0.0019  Score=55.32  Aligned_cols=106  Identities=11%  Similarity=0.107  Sum_probs=70.5

Q ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhcC
Q 043260          191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      .....++++||-+|+| .|..++.+++..+ ..+|+.++.+++..+.+++    .|...-+....   .+..+.+.++..
T Consensus        64 l~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~---~d~~~~~~~~~~  139 (229)
T 2avd_A           64 LARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL---KPALETLDELLA  139 (229)
T ss_dssp             HHHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHHH
T ss_pred             HHHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE---cCHHHHHHHHHh
Confidence            3455678899999998 5888888888763 3499999999988877654    35421111111   223333333322


Q ss_pred             C---CCccEEEEcCCCh---HHHHHHHHHhccCCcEEEEEcC
Q 043260          266 G---TGVDYGFECTGVA---SLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       266 ~---~g~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      .   ..||+|+......   ..+..+.+.|+++ |.+++...
T Consensus       140 ~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~~  180 (229)
T 2avd_A          140 AGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLRV  180 (229)
T ss_dssp             TTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             cCCCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEECC
Confidence            1   3799998765432   4678999999998 99988654

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.91  E-value=0.0014  Score=56.74  Aligned_cols=101  Identities=21%  Similarity=0.291  Sum_probs=62.5

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHH---HhcCCCCccEE
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVK---EMTHGTGVDYG  272 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~---~~~~~~g~d~v  272 (332)
                      ++++||+|+ |++|.++++.+...|+ +|+++++++++.+     +....+..+-.+.+++.+.+.   +..+..++|++
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~l   76 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   76 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCccccc-----cccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEE
Confidence            578999998 9999999999999998 9999999876532     111222111101122222222   22221269999


Q ss_pred             EEcCCC--------h---H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          273 FECTGV--------A---S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       273 id~~g~--------~---~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      |+++|.        .   +               ..+.+...+.++ |+++.+++...
T Consensus        77 v~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~~  133 (236)
T 1ooe_A           77 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAAAA  133 (236)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGGG
T ss_pred             EECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccC-CEEEEECchhh
Confidence            999983        1   0               123444555566 89999987543

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.90  E-value=0.0084  Score=53.64  Aligned_cols=88  Identities=18%  Similarity=0.227  Sum_probs=63.7

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|...   .     .+..+.+.      .+|+||.++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~---~-----~~~~~~~~------~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET---A-----STAKAIAE------QCDVIITMLP   70 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE---C-----SSHHHHHH------HCSEEEECCS
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCee---c-----CCHHHHHh------CCCEEEEECC
Confidence            479999999999999998888898 8999999999888777766421   1     22333332      4799999999


Q ss_pred             ChHHHHHHH-------HHhccCCcEEEEEcC
Q 043260          278 VASLISEAL-------EATKLGKGKVMAIGA  301 (332)
Q Consensus       278 ~~~~~~~~~-------~~l~~~~G~~v~~G~  301 (332)
                      .+..+...+       ..++++ ..++.++.
T Consensus        71 ~~~~~~~~~~~~~~l~~~l~~~-~~vv~~s~  100 (299)
T 1vpd_A           71 NSPHVKEVALGENGIIEGAKPG-TVLIDMSS  100 (299)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTT-CEEEECSC
T ss_pred             CHHHHHHHHhCcchHhhcCCCC-CEEEECCC
Confidence            755555444       456665 66666653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.90  E-value=0.0016  Score=54.98  Aligned_cols=100  Identities=10%  Similarity=0.064  Sum_probs=69.7

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC--eeeCCCCCCCchHHHHHHH
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT--DFINPDDEPNKSISELVKE  262 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~--~v~~~~~~~~~~~~~~~~~  262 (332)
                      .+....+++++||-+|+|. |..+..+++. +. +|+.+|.+++..+.+++    .|..  .++..+.   .+      .
T Consensus        70 ~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~------~  137 (210)
T 3lbf_A           70 TELLELTPQSRVLEIGTGS-GYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDG---WQ------G  137 (210)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GG------C
T ss_pred             HHhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCc---cc------C
Confidence            3566788999999999985 8888888887 65 99999999988877654    3433  2222211   11      1


Q ss_pred             hcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcC
Q 043260          263 MTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      ......||+|+....-......+.+.|+++ |++++.-.
T Consensus       138 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~pg-G~lv~~~~  175 (210)
T 3lbf_A          138 WQARAPFDAIIVTAAPPEIPTALMTQLDEG-GILVLPVG  175 (210)
T ss_dssp             CGGGCCEEEEEESSBCSSCCTHHHHTEEEE-EEEEEEEC
T ss_pred             CccCCCccEEEEccchhhhhHHHHHhcccC-cEEEEEEc
Confidence            111237999999766544556788999998 98876543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=96.90  E-value=0.0032  Score=55.21  Aligned_cols=78  Identities=21%  Similarity=0.232  Sum_probs=51.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHH-cCCCeEEEEcCCcchHHHH----HHcCCC-eee--CCCCCCCchHHHHHHH---h
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARI-QGAAKIIGIDKNPCRKDKG----EAFGMT-DFI--NPDDEPNKSISELVKE---M  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~-~G~~~Vi~~~~~~~~~~~~----~~lga~-~v~--~~~~~~~~~~~~~~~~---~  263 (332)
                      +++++||+|+ |.+|..+++.+.. .|+ +|++++++.++.+.+    ++.+.. .++  |..+  .+++.+.+.+   .
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD--LQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCC--HHHHHHHHHHHHHh
Confidence            5788999998 9999999988888 899 999999987765432    222432 222  3322  2333333332   2


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|+||+++|.
T Consensus        80 ~g--~id~li~~Ag~   92 (276)
T 1wma_A           80 YG--GLDVLVNNAGI   92 (276)
T ss_dssp             HS--SEEEEEECCCC
T ss_pred             cC--CCCEEEECCcc
Confidence            22  59999999873

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.90  E-value=0.0062  Score=53.53  Aligned_cols=103  Identities=18%  Similarity=0.227  Sum_probs=65.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc-----CCC-eee--CCCCCCCchHHHHHHH---
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF-----GMT-DFI--NPDDEPNKSISELVKE---  262 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l-----ga~-~v~--~~~~~~~~~~~~~~~~---  262 (332)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ +++     +.. ..+  |..+  .+++.+.+.+   
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   82 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD--QQQLRDTFRKVVD   82 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCC--HHHHHHHHHHHHH
Confidence            5788999998 9999999999999998 999999988765432 222     111 122  3322  2333333322   


Q ss_pred             hcCCCCccEEEEcCCCh--H---------------HHHHHHHHhcc-----CCcEEEEEcCCCC
Q 043260          263 MTHGTGVDYGFECTGVA--S---------------LISEALEATKL-----GKGKVMAIGAANE  304 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~--~---------------~~~~~~~~l~~-----~~G~~v~~G~~~~  304 (332)
                      ..+  ++|++|+++|..  +               ....++..+.+     . |+++.+++...
T Consensus        83 ~~g--~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~  143 (267)
T 2gdz_A           83 HFG--RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEG-GIIINMSSLAG  143 (267)
T ss_dssp             HHS--CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC-EEEEEECCGGG
T ss_pred             HcC--CCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCC-CEEEEeCCccc
Confidence            222  589999999842  0               12334455543     4 89999987543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.89  E-value=0.01  Score=53.43  Aligned_cols=88  Identities=24%  Similarity=0.240  Sum_probs=62.1

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe-eeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD-FINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      .+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|... .-+..+            .  -...|+||.++
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~e------------~--~~~aDvvi~~v   72 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACGAAASARE------------F--AGVVDALVILV   72 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEESSSTT------------T--TTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCccccCCHHH------------H--HhcCCEEEEEC
Confidence            579999999999999999999998 9999999999999888888755 222211            1  12468888888


Q ss_pred             CChHHHHHHH-------HHhccCCcEEEEEcC
Q 043260          277 GVASLISEAL-------EATKLGKGKVMAIGA  301 (332)
Q Consensus       277 g~~~~~~~~~-------~~l~~~~G~~v~~G~  301 (332)
                      ..+..+...+       ..++++ ..++..+.
T Consensus        73 p~~~~~~~v~~~~~~l~~~l~~g-~ivv~~st  103 (303)
T 3g0o_A           73 VNAAQVRQVLFGEDGVAHLMKPG-SAVMVSST  103 (303)
T ss_dssp             SSHHHHHHHHC--CCCGGGSCTT-CEEEECSC
T ss_pred             CCHHHHHHHHhChhhHHhhCCCC-CEEEecCC
Confidence            8754554443       334444 45554443

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.89  E-value=0.0071  Score=53.63  Aligned_cols=78  Identities=10%  Similarity=0.114  Sum_probs=53.0

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH----cCCCe-ee--CCCCCCCchHHHHHH---H
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA----FGMTD-FI--NPDDEPNKSISELVK---E  262 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~----lga~~-v~--~~~~~~~~~~~~~~~---~  262 (332)
                      -.|+++||+|+ +++|.++++.+...|+ +|++++++.++.+.+ ++    .|... .+  |..+  .++..+.+.   +
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~  101 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA--PPAVMAAVDQALK  101 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHH
Confidence            36789999998 9999999999999999 999999998765432 22    34432 22  3332  233333332   2


Q ss_pred             hcCCCCccEEEEcCC
Q 043260          263 MTHGTGVDYGFECTG  277 (332)
Q Consensus       263 ~~~~~g~d~vid~~g  277 (332)
                      ..+  ++|++|+++|
T Consensus       102 ~~g--~id~lv~nAg  114 (277)
T 4fc7_A          102 EFG--RIDILINCAA  114 (277)
T ss_dssp             HHS--CCCEEEECCC
T ss_pred             HcC--CCCEEEECCc
Confidence            232  5899999998

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.87  E-value=0.0061  Score=54.75  Aligned_cols=77  Identities=16%  Similarity=0.250  Sum_probs=52.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---HcCC---C-eee--CCCCCCCchHHHHHH---
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-E---AFGM---T-DFI--NPDDEPNKSISELVK---  261 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~---~lga---~-~v~--~~~~~~~~~~~~~~~---  261 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +   +.|.   . .++  |..+  .+++.+.+.   
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~  101 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE--ASGQDDIINTTL  101 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC--HHHHHHHHHHHH
Confidence            5788999998 9999999999999999 999999998776533 2   2233   2 222  3332  233333332   


Q ss_pred             HhcCCCCccEEEEcCC
Q 043260          262 EMTHGTGVDYGFECTG  277 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g  277 (332)
                      +..+  ++|++|+++|
T Consensus       102 ~~~g--~iD~lvnnAG  115 (297)
T 1xhl_A          102 AKFG--KIDILVNNAG  115 (297)
T ss_dssp             HHHS--CCCEEEECCC
T ss_pred             HhcC--CCCEEEECCC
Confidence            2222  5899999987

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.87  E-value=0.006  Score=53.23  Aligned_cols=101  Identities=18%  Similarity=0.195  Sum_probs=65.3

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcC-CCCccEE
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTH-GTGVDYG  272 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~-~~g~d~v  272 (332)
                      +.++++||+|+ |++|.++++.+...|+ +|+++++++++.+.     ....++..+  .++..+.+.+... -.++|++
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~d~~d--~~~v~~~~~~~~~~~g~iD~l   91 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNAD-----HSFTIKDSG--EEEIKSVIEKINSKSIKVDTF   91 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTSS-----EEEECSCSS--HHHHHHHHHHHHTTTCCEEEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----cceEEEeCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            34688999998 9999999999999999 89999998765421     111222222  2444444443322 1258999


Q ss_pred             EEcCCCh--------------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          273 FECTGVA--------------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       273 id~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      |+++|..                          ...+.+...++++ |+++.+++...
T Consensus        92 i~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~~  148 (251)
T 3orf_A           92 VCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG-GLFVLTGASAA  148 (251)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGGG
T ss_pred             EECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC-CEEEEEechhh
Confidence            9999831                          0123445566676 89999987653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.87  E-value=0.0034  Score=55.77  Aligned_cols=95  Identities=13%  Similarity=0.058  Sum_probs=61.6

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      ++++++|+|+|++|.++++.+...|. +|++++++.++.+ ++++++...-++..+  .++    +   .. .++|+||+
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~~~~~~~--~~~----~---~~-~~~DivVn  186 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALS--MDE----L---EG-HEFDLIIN  186 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECC--SGG----G---TT-CCCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccCCeeEec--HHH----h---cc-CCCCEEEE
Confidence            67899999999999999999999996 9999999988864 455655311011111  011    1   11 37999999


Q ss_pred             cCCChHHH--H-HHHHHhccCCcEEEEEcCC
Q 043260          275 CTGVASLI--S-EALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       275 ~~g~~~~~--~-~~~~~l~~~~G~~v~~G~~  302 (332)
                      +++....-  . .....+.++ ..++.+.-.
T Consensus       187 ~t~~~~~~~~~~i~~~~l~~~-~~v~D~~y~  216 (271)
T 1nyt_A          187 ATSSGISGDIPAIPSSLIHPG-IYCYDMFYQ  216 (271)
T ss_dssp             CCSCGGGTCCCCCCGGGCCTT-CEEEESCCC
T ss_pred             CCCCCCCCCCCCCCHHHcCCC-CEEEEeccC
Confidence            99975320  0 012235555 666676543

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.86  E-value=0.0035  Score=54.51  Aligned_cols=78  Identities=18%  Similarity=0.255  Sum_probs=53.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCee-eCCCCCCCchHHHHHH---HhcCCCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDF-INPDDEPNKSISELVK---EMTHGTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v-~~~~~~~~~~~~~~~~---~~~~~~g~  269 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +++|...+ .|..+  .+++.+.+.   +..+  ++
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g--~i   78 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD--PASVERGFAEALAHLG--RL   78 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC--HHHHHHHHHHHHHHHS--SC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCEEEEecCCC--HHHHHHHHHHHHHHcC--CC
Confidence            4678999998 9999999999999999 999999998776644 44563222 23332  233333332   2222  58


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|+++|.
T Consensus        79 d~lvn~Ag~   87 (245)
T 1uls_A           79 DGVVHYAGI   87 (245)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999883

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.86  E-value=0.0034  Score=55.57  Aligned_cols=78  Identities=13%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc---C---CC-eee--CCCCCCCchHHHHHH---
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF---G---MT-DFI--NPDDEPNKSISELVK---  261 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l---g---a~-~v~--~~~~~~~~~~~~~~~---  261 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +++   .   .. ..+  |..+  .+++.+.+.   
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~   81 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT--DAGQDEILSTTL   81 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCC--HHHHHHHHHHHH
Confidence            4678999998 9999999999999999 999999998776543 333   2   11 122  3332  233333332   


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +..+  ++|++|+++|.
T Consensus        82 ~~~g--~id~lv~~Ag~   96 (278)
T 1spx_A           82 GKFG--KLDILVNNAGA   96 (278)
T ss_dssp             HHHS--CCCEEEECCC-
T ss_pred             HHcC--CCCEEEECCCC
Confidence            2222  58999999874

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.86  E-value=0.0033  Score=55.67  Aligned_cols=78  Identities=14%  Similarity=0.189  Sum_probs=54.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCe-e--eCCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTD-F--INPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~-v--~~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++... .  .|..+  .+++.+.+.   +..+  
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g--   84 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGRGAVHHVVDLTN--EVSVRALIDFTIDTFG--   84 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHS--
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCCeEEEECCCCC--HHHHHHHHHHHHHHcC--
Confidence            5789999998 9999999999999999 999999998877643 4555432 2  23332  233333332   2232  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus        85 ~id~lv~nAg~   95 (271)
T 3tzq_B           85 RLDIVDNNAAH   95 (271)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            58999999874

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.84  E-value=0.0024  Score=55.61  Aligned_cols=77  Identities=17%  Similarity=0.219  Sum_probs=52.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee--eCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF--INPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v--~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.++.--..  .|..+   .+..+.+.+..+  ++|++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~--~id~l   78 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK---KKQIDQFANEVE--RLDVL   78 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC---HHHHHHHHHHCS--CCSEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhccCceEEEeeCCC---HHHHHHHHHHhC--CCCEE
Confidence            4788999998 9999999999999998 99999998877654333321122  23332   222223333332  68999


Q ss_pred             EEcCCC
Q 043260          273 FECTGV  278 (332)
Q Consensus       273 id~~g~  278 (332)
                      |+++|.
T Consensus        79 v~~Ag~   84 (246)
T 2ag5_A           79 FNVAGF   84 (246)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999883

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.84  E-value=0.0054  Score=53.84  Aligned_cols=78  Identities=13%  Similarity=0.150  Sum_probs=50.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHH----HHHcCCCe-ee--CCCCCCCchHHHHHH---Hh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGI-DKNPCRKDK----GEAFGMTD-FI--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~-~~~~~~~~~----~~~lga~~-v~--~~~~~~~~~~~~~~~---~~  263 (332)
                      .|+++||+|+ +++|.++++.+...|+ +|+++ ++++++.+.    +++.|... .+  |..+  .++..+.+.   +.
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   83 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTN--AAEVEAAISAAADK   83 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999998 9999999999999999 88888 555554432    23345332 22  3322  233333333   22


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  +.|++|+++|.
T Consensus        84 ~g--~id~lv~nAg~   96 (259)
T 3edm_A           84 FG--EIHGLVHVAGG   96 (259)
T ss_dssp             HC--SEEEEEECCCC
T ss_pred             hC--CCCEEEECCCc
Confidence            22  58999999873

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.84  E-value=0.0035  Score=54.86  Aligned_cols=78  Identities=18%  Similarity=0.305  Sum_probs=54.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCe-ee--CCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTD-FI--NPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~-v~--~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      .++++||+|+ +++|.++++.+...|+ +|+++++++++.+.+ ++++... .+  |..+  .+++.+.+.   +..+  
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g--   82 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAADISK--EADVDAAVEAALSKFG--   82 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHS--
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHhcC--
Confidence            4788999998 9999999999999999 899999998887644 4555432 22  3322  233333332   2222  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus        83 ~id~li~~Ag~   93 (261)
T 3n74_A           83 KVDILVNNAGI   93 (261)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            58999999873

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.84  E-value=0.0055  Score=53.22  Aligned_cols=78  Identities=21%  Similarity=0.295  Sum_probs=51.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHH---Hh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK-NPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~-~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~---~~  263 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.+    ++.+... .+  |..+  .+++.+.+.   +.
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVAN--AEDVTNMVKQTVDV   79 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999998 9999999999999999 8999988 66665432    2335432 22  3332  233333333   22


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus        80 ~g--~id~lv~nAg~   92 (246)
T 2uvd_A           80 FG--QVDILVNNAGV   92 (246)
T ss_dssp             HS--CCCEEEECCCC
T ss_pred             cC--CCCEEEECCCC
Confidence            22  58999999884

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.83  E-value=0.0033  Score=56.96  Aligned_cols=88  Identities=20%  Similarity=0.305  Sum_probs=63.8

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++.++ +.+.++|++.+         ++.+.+.      ..|+|+.+
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~~---------~l~ell~------~aDvV~l~  203 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGKFV---------DLETLLK------ESDVVTIH  203 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCEEC---------CHHHHHH------HCSEEEEC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCcccc---------CHHHHHh------hCCEEEEe
Confidence            57899999999999999999999999 99999998877 55667776321         1222221      36888887


Q ss_pred             CCChH----HH-HHHHHHhccCCcEEEEEcC
Q 043260          276 TGVAS----LI-SEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       276 ~g~~~----~~-~~~~~~l~~~~G~~v~~G~  301 (332)
                      +....    .+ ...++.++++ +.++.++.
T Consensus       204 ~p~~~~t~~li~~~~l~~mk~g-a~lin~ar  233 (307)
T 1wwk_A          204 VPLVESTYHLINEERLKLMKKT-AILINTSR  233 (307)
T ss_dssp             CCCSTTTTTCBCHHHHHHSCTT-CEEEECSC
T ss_pred             cCCChHHhhhcCHHHHhcCCCC-eEEEECCC
Confidence            76421    22 3566778887 77777765

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.83  E-value=0.004  Score=54.46  Aligned_cols=78  Identities=12%  Similarity=0.118  Sum_probs=52.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----c--C-CC-eee--CCCCCCCchHHHHHH---
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----F--G-MT-DFI--NPDDEPNKSISELVK---  261 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----l--g-a~-~v~--~~~~~~~~~~~~~~~---  261 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+    .  + .. .++  |..+  .++..+.+.   
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   82 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD--CTKADTEIKDIH   82 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCC--HHHHHHHHHHHH
Confidence            5788999998 9999999999999999 99999999887654322    1  2 11 222  3332  233333332   


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +..+  ++|++|+++|.
T Consensus        83 ~~~g--~iD~lvnnAg~   97 (250)
T 3nyw_A           83 QKYG--AVDILVNAAAM   97 (250)
T ss_dssp             HHHC--CEEEEEECCCC
T ss_pred             HhcC--CCCEEEECCCc
Confidence            2222  59999999985

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.83  E-value=0.0093  Score=51.17  Aligned_cols=103  Identities=13%  Similarity=0.092  Sum_probs=68.3

Q ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCCC--eeeCCCCCCCchHHHHHHHhc
Q 043260          192 FKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGMT--DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       192 ~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga~--~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      .+.+++.+||-+|+|. |..++.+++.++ ..+|+.++.+++..+.+++    .|..  .+- ...   .+..+.+..+.
T Consensus        52 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~-~~~---gda~~~l~~~~  126 (221)
T 3dr5_A           52 TNGNGSTGAIAITPAA-GLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVR-FLL---SRPLDVMSRLA  126 (221)
T ss_dssp             SCCTTCCEEEEESTTH-HHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEE-EEC---SCHHHHGGGSC
T ss_pred             hCCCCCCCEEEEcCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEE-EEE---cCHHHHHHHhc
Confidence            3444566999999977 888889998863 2399999999988776644    4543  221 111   22333333332


Q ss_pred             CCCCccEEEEcCCCh---HHHHHHHHHhccCCcEEEEEcC
Q 043260          265 HGTGVDYGFECTGVA---SLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       265 ~~~g~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      + ..||+||-.....   ..+..+.+.|+++ |.+++-..
T Consensus       127 ~-~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~dn~  164 (221)
T 3dr5_A          127 N-DSYQLVFGQVSPMDLKALVDAAWPLLRRG-GALVLADA  164 (221)
T ss_dssp             T-TCEEEEEECCCTTTHHHHHHHHHHHEEEE-EEEEETTT
T ss_pred             C-CCcCeEEEcCcHHHHHHHHHHHHHHcCCC-cEEEEeCC
Confidence            2 3799999755432   3578899999998 99987443

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.82  E-value=0.0036  Score=60.31  Aligned_cols=91  Identities=22%  Similarity=0.245  Sum_probs=69.9

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      -.|++|+|+|.|.+|..+++.++.+|+ +|++++++..+...+...|.. +        .+    +.++..  ..|+|+.
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~-~--------~~----l~ell~--~aDiVi~  338 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYR-V--------VT----MEYAAD--KADIFVT  338 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCE-E--------CC----HHHHTT--TCSEEEE
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCE-e--------CC----HHHHHh--cCCEEEE
Confidence            578999999999999999999999999 999999988775444455653 2        11    222322  5899999


Q ss_pred             cCCChHHH-HHHHHHhccCCcEEEEEcCC
Q 043260          275 CTGVASLI-SEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       275 ~~g~~~~~-~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ++++...+ ...++.++++ ..++.+|..
T Consensus       339 ~~~t~~lI~~~~l~~MK~g-AilINvgrg  366 (494)
T 3d64_A          339 ATGNYHVINHDHMKAMRHN-AIVCNIGHF  366 (494)
T ss_dssp             CSSSSCSBCHHHHHHCCTT-EEEEECSSS
T ss_pred             CCCcccccCHHHHhhCCCC-cEEEEcCCC
Confidence            98776555 4778899997 888888864

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.82  E-value=0.0034  Score=54.60  Aligned_cols=80  Identities=23%  Similarity=0.364  Sum_probs=53.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCe--ee--CCCCCCCchHHHHHHHhcCCCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTD--FI--NPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~--v~--~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+ ++++...  .+  |..+  .+++.+.+.+...-.++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~i   86 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGAAVAARIVADVTD--AEAMTAAAAEAEAVAPV   86 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTC--HHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceeEEEEecCC--HHHHHHHHHHHHhhCCC
Confidence            5688999998 9999999999999998 999999998776543 4444332  22  3332  23333333322111268


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|+++|.
T Consensus        87 d~li~~Ag~   95 (254)
T 2wsb_A           87 SILVNSAGI   95 (254)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCcc
Confidence            999999873

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.81  E-value=0.0037  Score=55.65  Aligned_cols=77  Identities=18%  Similarity=0.239  Sum_probs=51.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe--ee--CCCCCCCchHHHHHH---Hh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD--FI--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~--v~--~~~~~~~~~~~~~~~---~~  263 (332)
                      +++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.|...  ++  |..+  .+++.+.+.   +.
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED--MTFAEQFVAQAGKL  103 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCC--HHHHHHHHHHHHHH
Confidence            4688999998 9999999999999998 999999998876543    2335422  22  3322  223322222   22


Q ss_pred             cCCCCccEEEEc-CC
Q 043260          264 THGTGVDYGFEC-TG  277 (332)
Q Consensus       264 ~~~~g~d~vid~-~g  277 (332)
                      .+  ++|++|++ .|
T Consensus       104 ~g--~iD~li~naag  116 (286)
T 1xu9_A          104 MG--GLDMLILNHIT  116 (286)
T ss_dssp             HT--SCSEEEECCCC
T ss_pred             cC--CCCEEEECCcc
Confidence            22  69999998 44

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.80  E-value=0.0049  Score=54.66  Aligned_cols=77  Identities=18%  Similarity=0.287  Sum_probs=53.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCe-ee--CCCCCCCchHHHHHHHhcCCCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTD-FI--NPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~-v~--~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      .|+++||+|+ +++|.++++.+...|+ +|++++++.++.+.+ ++++... ++  |..+  .+++.+.+.+...-.+.|
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~~id  105 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGNRAEFVSTNVTS--EDSVLAAIEAANQLGRLR  105 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHhCCCC
Confidence            5788999998 9999999999999999 999999998887644 4565432 22  3332  344444444442222689


Q ss_pred             EEEEc
Q 043260          271 YGFEC  275 (332)
Q Consensus       271 ~vid~  275 (332)
                      ++|.+
T Consensus       106 ~lv~~  110 (281)
T 3ppi_A          106 YAVVA  110 (281)
T ss_dssp             EEEEC
T ss_pred             eEEEc
Confidence            99998

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.79  E-value=0.0039  Score=52.98  Aligned_cols=97  Identities=12%  Similarity=0.154  Sum_probs=63.9

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      +|||+|+ |.+|..+++.+...|. +|+++++++++.+..  .+. .++..+-   .+..+.+.+...  ++|+||.+++
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~--~~~-~~~~~D~---~d~~~~~~~~~~--~~d~vi~~ag   72 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY--NNV-KAVHFDV---DWTPEEMAKQLH--GMDAIINVSG   72 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC--TTE-EEEECCT---TSCHHHHHTTTT--TCSEEEECCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc--CCc-eEEEecc---cCCHHHHHHHHc--CCCEEEECCc
Confidence            6999998 9999999999999998 999999988765322  122 2332222   221234555443  5999999998


Q ss_pred             ChH---------HHHHHHHHhccCC-cEEEEEcCCCC
Q 043260          278 VAS---------LISEALEATKLGK-GKVMAIGAANE  304 (332)
Q Consensus       278 ~~~---------~~~~~~~~l~~~~-G~~v~~G~~~~  304 (332)
                      ...         ....+++.++..+ ++++.+++...
T Consensus        73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           73 SGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS  109 (219)
T ss_dssp             CTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             CCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence            531         2334445444441 58999887655

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.79  E-value=0.0037  Score=55.04  Aligned_cols=78  Identities=13%  Similarity=0.097  Sum_probs=53.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHHcCCCee-eCCCCCCCchHHHHHH---HhcCCCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK-DKGEAFGMTDF-INPDDEPNKSISELVK---EMTHGTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~-~~~~~lga~~v-~~~~~~~~~~~~~~~~---~~~~~~g~  269 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++. +.+++.+...+ .|..+  .+++.+.+.   +..+  ++
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g--~i  100 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAVALYGDFSC--ETGIMAFIDLLKTQTS--SL  100 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCEEEECCTTS--HHHHHHHHHHHHHHCS--CC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCeEEECCCCC--HHHHHHHHHHHHHhcC--CC
Confidence            4678999998 9999999999999999 899999988764 34455664332 23332  233333333   2222  68


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|+++|.
T Consensus       101 D~lv~nAg~  109 (260)
T 3gem_A          101 RAVVHNASE  109 (260)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999883

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.79  E-value=0.0095  Score=52.70  Aligned_cols=79  Identities=22%  Similarity=0.256  Sum_probs=51.3

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC-------------CcchHHHH----HHcCCCee---eCCCCCCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK-------------NPCRKDKG----EAFGMTDF---INPDDEPN  253 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~-------------~~~~~~~~----~~lga~~v---~~~~~~~~  253 (332)
                      -.|+++||+|+ +++|.++++.+...|+ +|+++++             +.++.+..    ++.+....   .|..+  .
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~   85 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRD--F   85 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC--H
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC--H
Confidence            35789999998 9999999999999999 9999987             34443322    23343322   23332  2


Q ss_pred             chHHHHHHH---hcCCCCccEEEEcCCC
Q 043260          254 KSISELVKE---MTHGTGVDYGFECTGV  278 (332)
Q Consensus       254 ~~~~~~~~~---~~~~~g~d~vid~~g~  278 (332)
                      +++.+.+.+   ..+  +.|++|+++|.
T Consensus        86 ~~v~~~~~~~~~~~g--~id~lvnnAg~  111 (277)
T 3tsc_A           86 DRLRKVVDDGVAALG--RLDIIVANAGV  111 (277)
T ss_dssp             HHHHHHHHHHHHHHS--CCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcC--CCCEEEECCCC
Confidence            333333332   222  58999999884

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.79  E-value=0.0037  Score=55.65  Aligned_cols=78  Identities=18%  Similarity=0.232  Sum_probs=54.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCee-e--CCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDF-I--NPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v-~--~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      .|+++||+|+ +++|.++++.+...|+ +|++++++.++.+.+ ++++.... +  |..+  .++..+.+.   +..+  
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g--   78 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGNAVGVVGDVRS--LQDQKRAAERCLAAFG--   78 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTTEEEEECCTTC--HHHHHHHHHHHHHHHS--
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHHHHHhcC--
Confidence            4788999998 9999999999999999 999999998887654 44554322 2  3322  233333332   3332  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus        79 ~iD~lvnnAg~   89 (281)
T 3zv4_A           79 KIDTLIPNAGI   89 (281)
T ss_dssp             CCCEEECCCCC
T ss_pred             CCCEEEECCCc
Confidence            58999999884

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.79  E-value=0.0054  Score=53.44  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=53.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHH-HHHHcCCCe-ee--CCCCCCCchHHHHHHH---hcCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP-CRKD-KGEAFGMTD-FI--NPDDEPNKSISELVKE---MTHG  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~-~~~~-~~~~lga~~-v~--~~~~~~~~~~~~~~~~---~~~~  266 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++ ++.+ .+++.|... .+  |..+  .+++.+.+.+   ..+ 
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g-   81 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ--PGDVEAFGKQVISTFG-   81 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHHS-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHHHHHHcC-
Confidence            4788999998 9999999999999999 999999987 6554 345555432 22  3332  2333333322   222 


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                       ++|++|+++|.
T Consensus        82 -~id~lv~nAg~   92 (249)
T 2ew8_A           82 -RCDILVNNAGI   92 (249)
T ss_dssp             -CCCEEEECCCC
T ss_pred             -CCCEEEECCCC
Confidence             58999999874

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.78  E-value=0.00087  Score=59.39  Aligned_cols=74  Identities=19%  Similarity=0.181  Sum_probs=48.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHH---HHHHHhcCCCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSIS---ELVKEMTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~---~~~~~~~~~~g~d~  271 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++.++.+....+    ..|..+  .++..   +.+.+..+  ++|+
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~----~~Dv~~--~~~~~~~~~~~~~~~g--~iD~   97 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIAADLHL----PGDLRE--AAYADGLPGAVAAGLG--RLDI   97 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSCCSEEC----CCCTTS--HHHHHHHHHHHHHHHS--CCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHhhhcc----CcCCCC--HHHHHHHHHHHHHhcC--CCCE
Confidence            5788999998 9999999999999999 999999876654221111    112222  12222   22223332  5999


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      +|+++|.
T Consensus        98 lvnnAg~  104 (266)
T 3uxy_A           98 VVNNAGV  104 (266)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.78  E-value=0.003  Score=55.37  Aligned_cols=78  Identities=19%  Similarity=0.334  Sum_probs=48.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCC-eee--CCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMT-DFI--NPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~-~v~--~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      .++++||+|+ +++|.++++.+...|+ +|+++++++++.+. .++++.. ..+  |..+  .++..+.+.   +..+  
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g--   80 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGAAVRFRNADVTN--EADATAALAFAKQEFG--   80 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC------------CEEEECCTTC--HHHHHHHHHHHHHHHS--
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcC--
Confidence            5788999998 9999999999999999 99999998877654 3445432 222  3322  233333332   3332  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      +.|++|+++|.
T Consensus        81 ~id~lv~nAg~   91 (257)
T 3tpc_A           81 HVHGLVNCAGT   91 (257)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            58999999884

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.77  E-value=0.0089  Score=53.04  Aligned_cols=86  Identities=13%  Similarity=0.109  Sum_probs=61.6

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      +++++|+|+|++|.+++..+...| .+|+++.|+.+|.+.+.++|. .+....+            +  . .+|+||+++
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt~~ka~~la~~~~-~~~~~~~------------l--~-~~DiVInaT  180 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRSSRGLDFFQRLGC-DCFMEPP------------K--S-AFDLIINAT  180 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCTTHHHHHHHTC-EEESSCC------------S--S-CCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHCCC-eEecHHH------------h--c-cCCEEEEcc
Confidence            889999999999999999999999 599999999988765447774 3333322            1  1 689999998


Q ss_pred             CChH----HH--HHHHHHhccCCcEEEEEc
Q 043260          277 GVAS----LI--SEALEATKLGKGKVMAIG  300 (332)
Q Consensus       277 g~~~----~~--~~~~~~l~~~~G~~v~~G  300 (332)
                      +...    .+  ......++++ ..++.+-
T Consensus       181 p~Gm~~~~~l~~~~l~~~l~~~-~~v~D~v  209 (269)
T 3phh_A          181 SASLHNELPLNKEVLKGYFKEG-KLAYDLA  209 (269)
T ss_dssp             TTCCCCSCSSCHHHHHHHHHHC-SEEEESC
T ss_pred             cCCCCCCCCCChHHHHhhCCCC-CEEEEeC
Confidence            7531    12  1222367776 7777664

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.77  E-value=0.017  Score=51.45  Aligned_cols=80  Identities=13%  Similarity=0.077  Sum_probs=51.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHHHH-H----HcCCCe-eeCCCCCC----CchHHHHHH--
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP-CRKDKG-E----AFGMTD-FINPDDEP----NKSISELVK--  261 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~-~~~~~~-~----~lga~~-v~~~~~~~----~~~~~~~~~--  261 (332)
                      .++++||+|+ |++|.++++.+...|+ +|++++++. ++.+.+ +    +.|... .+..+-.+    .+++.+.+.  
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~  100 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC  100 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence            4688999998 9999999999999999 999999987 655432 2    334332 22111111    122332222  


Q ss_pred             -HhcCCCCccEEEEcCCC
Q 043260          262 -EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 -~~~~~~g~d~vid~~g~  278 (332)
                       +..+  ++|++|+++|.
T Consensus       101 ~~~~g--~iD~lvnnAG~  116 (288)
T 2x9g_A          101 FRAFG--RCDVLVNNASA  116 (288)
T ss_dssp             HHHHS--CCCEEEECCCC
T ss_pred             HHhcC--CCCEEEECCCC
Confidence             2222  58999999873

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.77  E-value=0.011  Score=53.62  Aligned_cols=79  Identities=22%  Similarity=0.189  Sum_probs=51.5

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC------------cchHH----HHHHcCCCeee---CCCCCCCc
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN------------PCRKD----KGEAFGMTDFI---NPDDEPNK  254 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~------------~~~~~----~~~~lga~~v~---~~~~~~~~  254 (332)
                      -.|+++||+|+ |++|.++++.+...|+ +|++++++            .++++    .+++.|.....   |..+  .+
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~  120 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRD--LA  120 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC--HH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCC--HH
Confidence            46789999998 9999999999999999 99998775            33333    22344544222   3332  23


Q ss_pred             hHHHHHH---HhcCCCCccEEEEcCCC
Q 043260          255 SISELVK---EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       255 ~~~~~~~---~~~~~~g~d~vid~~g~  278 (332)
                      ++.+.+.   +..+  ++|++|+++|.
T Consensus       121 ~v~~~~~~~~~~~g--~iD~lVnnAg~  145 (317)
T 3oec_A          121 SLQAVVDEALAEFG--HIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHHHHHHS--CCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcC--CCCEEEECCCC
Confidence            3333333   2222  58999999884

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.77  E-value=0.0064  Score=51.22  Aligned_cols=97  Identities=14%  Similarity=0.126  Sum_probs=69.4

Q ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe--eeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          192 FKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD--FINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       192 ~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~--v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      ..+.++.+||-+|+|. |..+..+++. |. +|+++|.+++.++.+++.+...  ++..+.   .       ++.....|
T Consensus        42 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~---~-------~~~~~~~~  108 (218)
T 3ou2_A           42 RAGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDL---F-------DWTPDRQW  108 (218)
T ss_dssp             TTTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEECCT---T-------SCCCSSCE
T ss_pred             hcCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEeccc---c-------cCCCCCce
Confidence            3477888999999976 7777777776 77 9999999999999888866332  222211   1       11234479


Q ss_pred             cEEEEcCCC--------hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          270 DYGFECTGV--------ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       270 d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      |+|+....-        ...+..+.+.|+++ |.+++....
T Consensus       109 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  148 (218)
T 3ou2_A          109 DAVFFAHWLAHVPDDRFEAFWESVRSAVAPG-GVVEFVDVT  148 (218)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred             eEEEEechhhcCCHHHHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence            999985432        34678889999998 998887543

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.77  E-value=0.012  Score=52.17  Aligned_cols=34  Identities=29%  Similarity=0.326  Sum_probs=31.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      .|+++||+|+ +++|.++++.+...|+ +|++++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence            5789999998 9999999999999999 99999876

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.77  E-value=0.013  Score=51.30  Aligned_cols=96  Identities=24%  Similarity=0.365  Sum_probs=67.1

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC-eeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT-DFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~-~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ++++++||-+|+|. |..++.+++ .|. +|+++|.++...+.+++    .+.+ .++.      .+..+.   +.. ..
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~------~d~~~~---~~~-~~  184 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE------GSLEAA---LPF-GP  184 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE------SCHHHH---GGG-CC
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEE------CChhhc---CcC-CC
Confidence            67899999999976 777776666 687 99999999988876654    3443 2221      222222   222 37


Q ss_pred             ccEEEEcCCC---hHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          269 VDYGFECTGV---ASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       269 ~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ||+|+.+...   ...+..+.+.|+++ |++++.+...
T Consensus       185 fD~Vv~n~~~~~~~~~l~~~~~~Lkpg-G~lils~~~~  221 (254)
T 2nxc_A          185 FDLLVANLYAELHAALAPRYREALVPG-GRALLTGILK  221 (254)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEEEG
T ss_pred             CCEEEECCcHHHHHHHHHHHHHHcCCC-CEEEEEeecc
Confidence            9999976532   23567888899998 9999987654

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.77  E-value=0.0052  Score=54.67  Aligned_cols=91  Identities=8%  Similarity=0.086  Sum_probs=61.6

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCC--CeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGM--TDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga--~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      .+++++|+|+|++|.+++..+...|+++|+++.|+.+|.+ ++++++.  -.++...     +       +.. ..+|+|
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~-----~-------l~~-~~~Div  185 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYE-----A-------LEG-QSFDIV  185 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSG-----G-------GTT-CCCSEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHH-----H-------hcc-cCCCEE
Confidence            5789999999999999999999999779999999988865 4455553  1233221     1       111 379999


Q ss_pred             EEcCCChHH---HHHHHHHhccCCcEEEEEc
Q 043260          273 FECTGVASL---ISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       273 id~~g~~~~---~~~~~~~l~~~~G~~v~~G  300 (332)
                      |++++..-.   .....+.++++ ..++.+-
T Consensus       186 InaTp~gm~~~~~~i~~~~l~~~-~~V~Dlv  215 (272)
T 3pwz_A          186 VNATSASLTADLPPLPADVLGEA-ALAYELA  215 (272)
T ss_dssp             EECSSGGGGTCCCCCCGGGGTTC-SEEEESS
T ss_pred             EECCCCCCCCCCCCCCHHHhCcC-CEEEEee
Confidence            999876311   00112456665 6666654

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.76  E-value=0.0036  Score=53.35  Aligned_cols=97  Identities=16%  Similarity=0.270  Sum_probs=62.4

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      ++|||+|+ |.+|..+++.+...|. +|+++++++++.+.+.  ..-.++..+-   .+ .+.+.+...  ++|+||.++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~--~~~~~~~~Dl---~d-~~~~~~~~~--~~d~vi~~a   75 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN--EHLKVKKADV---SS-LDEVCEVCK--GADAVISAF   75 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC--TTEEEECCCT---TC-HHHHHHHHT--TCSEEEECC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc--CceEEEEecC---CC-HHHHHHHhc--CCCEEEEeC
Confidence            58999998 9999999999999998 9999999887653221  1112222221   11 123333333  599999998


Q ss_pred             CCh-----------HHHHHHHHHhccCC-cEEEEEcCCC
Q 043260          277 GVA-----------SLISEALEATKLGK-GKVMAIGAAN  303 (332)
Q Consensus       277 g~~-----------~~~~~~~~~l~~~~-G~~v~~G~~~  303 (332)
                      +..           .....+++.+.+.+ .+++.+++..
T Consensus        76 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           76 NPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             CC------CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             cCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence            863           12344555555541 4899888755

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.76  E-value=0.017  Score=51.26  Aligned_cols=79  Identities=18%  Similarity=0.164  Sum_probs=51.8

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHH----HHHcCCCe-ee--CCCCCCCchHHHHHH---H
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK-NPCRKDK----GEAFGMTD-FI--NPDDEPNKSISELVK---E  262 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~-~~~~~~~----~~~lga~~-v~--~~~~~~~~~~~~~~~---~  262 (332)
                      ..++++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.    +++.|... .+  |..+  .++..+.+.   +
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~  103 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLAD--LSSHQATVDAVVA  103 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTS--GGGHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHH
Confidence            45788999998 9999999999999999 8999885 5555432    23345432 22  3332  334433333   3


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      ..+  +.|++|+++|.
T Consensus       104 ~~g--~iD~lvnnAg~  117 (280)
T 4da9_A          104 EFG--RIDCLVNNAGI  117 (280)
T ss_dssp             HHS--CCCEEEEECC-
T ss_pred             HcC--CCCEEEECCCc
Confidence            333  58999999985

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.75  E-value=0.004  Score=55.83  Aligned_cols=100  Identities=14%  Similarity=0.168  Sum_probs=72.5

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC---eeeCCCCCCCchHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT---DFINPDDEPNKSISELV  260 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~~  260 (332)
                      +.+..+++++++||-+|+|. |..+..+++..|. +|+++|.+++.++.+++    .|..   .++..+      +    
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d------~----  131 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG------W----  131 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECC------G----
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC------H----
Confidence            44566789999999999986 8888899998886 99999999988876654    3432   122221      1    


Q ss_pred             HHhcCCCCccEEEEcCCC---------------hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          261 KEMTHGTGVDYGFECTGV---------------ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~---------------~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      .++ + ..||+|+....-               ...+..+.+.|+|+ |++++....
T Consensus       132 ~~~-~-~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~  185 (302)
T 3hem_A          132 EEF-D-EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTIT  185 (302)
T ss_dssp             GGC-C-CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT-CEEEEEEEE
T ss_pred             HHc-C-CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC-cEEEEEEEe
Confidence            122 2 379999985321               25678999999998 999887654

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.75  E-value=0.016  Score=50.96  Aligned_cols=78  Identities=21%  Similarity=0.278  Sum_probs=52.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCC--C-eee--CCCCCCCchHHHHHHH---hcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGM--T-DFI--NPDDEPNKSISELVKE---MTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga--~-~v~--~~~~~~~~~~~~~~~~---~~~  265 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+. .++++.  . .++  |..+  .+++.+.+.+   ..+
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   91 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK--DEDVRNLVDTTIAKHG   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            5788999998 9999999999999999 99999998776543 344432  1 222  3322  2333333332   222


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                        ++|++|+++|.
T Consensus        92 --~id~li~~Ag~  102 (278)
T 2bgk_A           92 --KLDIMFGNVGV  102 (278)
T ss_dssp             --CCCEEEECCCC
T ss_pred             --CCCEEEECCcc
Confidence              58999999873

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.75  E-value=0.003  Score=60.58  Aligned_cols=103  Identities=22%  Similarity=0.291  Sum_probs=75.1

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      .-.|++|+|+|.|.+|..+++.++.+|+ +|++++++..+...+...|.. +        .+    +.+..  ...|+|+
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~-~--------~~----l~ell--~~aDiVi  317 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-V--------VT----LDEIV--DKGDFFI  317 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-E--------CC----HHHHT--TTCSEEE
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCE-e--------cC----HHHHH--hcCCEEE
Confidence            3578999999999999999999999999 999999998775445556652 2        11    22222  2589999


Q ss_pred             EcCCChHHH-HHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc
Q 043260          274 ECTGVASLI-SEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL  316 (332)
Q Consensus       274 d~~g~~~~~-~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~  316 (332)
                      -++++...+ ...++.++++ ..++.+|...   ..++...+..
T Consensus       318 ~~~~t~~lI~~~~l~~MK~g-ailiNvgrg~---~EId~~aL~~  357 (479)
T 1v8b_A          318 TCTGNVDVIKLEHLLKMKNN-AVVGNIGHFD---DEIQVNELFN  357 (479)
T ss_dssp             ECCSSSSSBCHHHHTTCCTT-CEEEECSSTT---TSBCHHHHHT
T ss_pred             ECCChhhhcCHHHHhhcCCC-cEEEEeCCCC---ccccchhhhc
Confidence            998776555 3677889997 8999888643   3345444433

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.74  E-value=0.011  Score=53.77  Aligned_cols=93  Identities=19%  Similarity=0.235  Sum_probs=66.7

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHHcCCC-eeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAA-KIIGIDKNPCRKDKGEAFGMT-DFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~-~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .+|.|+|.|.+|.+.++.++..|.. +|+++++++++.+.++++|.. ......    .+.      .  -..+|+||.|
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~----~~~------~--~~~aDvVila  101 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI----AKV------E--DFSPDFVMLS  101 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCT----TGG------G--GGCCSEEEEC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCH----HHH------h--hccCCEEEEe
Confidence            6899999999999999999999863 799999999999999888863 232211    110      1  1258999999


Q ss_pred             CCChH---HHHHHHHHhccCCcEEEEEcCCC
Q 043260          276 TGVAS---LISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       276 ~g~~~---~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +....   .+.+....++++ ..++.+++..
T Consensus       102 vp~~~~~~vl~~l~~~l~~~-~iv~d~~Svk  131 (314)
T 3ggo_A          102 SPVRTFREIAKKLSYILSED-ATVTDQGSVK  131 (314)
T ss_dssp             SCGGGHHHHHHHHHHHSCTT-CEEEECCSCC
T ss_pred             CCHHHHHHHHHHHhhccCCC-cEEEECCCCc
Confidence            98742   344555566666 6777776543

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.74  E-value=0.0089  Score=52.10  Aligned_cols=75  Identities=20%  Similarity=0.158  Sum_probs=52.4

Q ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          194 VEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       194 ~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      ...++++||+|+ |++|.++++.+...|+ +|++++++++.   +++++...++ . +. .++..+.+.+..   ++|++
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~---~~~~~~~~~~-~-D~-~~~~~~~~~~~~---~iD~l   85 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVV-C-DL-RKDLDLLFEKVK---EVDIL   85 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEE-C-CT-TTCHHHHHHHSC---CCSEE
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHH---HHhhCCeEEE-e-eH-HHHHHHHHHHhc---CCCEE
Confidence            346789999998 9999999999999999 89999988643   4445532232 1 11 234444444432   69999


Q ss_pred             EEcCCC
Q 043260          273 FECTGV  278 (332)
Q Consensus       273 id~~g~  278 (332)
                      |+++|.
T Consensus        86 v~~Ag~   91 (249)
T 1o5i_A           86 VLNAGG   91 (249)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.74  E-value=0.0046  Score=55.10  Aligned_cols=79  Identities=20%  Similarity=0.211  Sum_probs=52.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc---CCCeeeCCCCC-CCchHHHHHH---HhcCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF---GMTDFINPDDE-PNKSISELVK---EMTHG  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l---ga~~v~~~~~~-~~~~~~~~~~---~~~~~  266 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +++   +.......-+. +.++..+.+.   +..+ 
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g-   84 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFG-   84 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHS-
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC-
Confidence            5788999998 9999999999999999 899999998876544 333   33322211111 1223322222   2222 


Q ss_pred             CCccEEEEcCC
Q 043260          267 TGVDYGFECTG  277 (332)
Q Consensus       267 ~g~d~vid~~g  277 (332)
                       +.|++|+++|
T Consensus        85 -~iD~lvnnAg   94 (280)
T 3tox_A           85 -GLDTAFNNAG   94 (280)
T ss_dssp             -CCCEEEECCC
T ss_pred             -CCCEEEECCC
Confidence             5999999988

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.72  E-value=0.0076  Score=50.16  Aligned_cols=102  Identities=17%  Similarity=0.207  Sum_probs=70.5

Q ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCC-C--eeeCCCCCCCchHHHHHHH
Q 043260          191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGM-T--DFINPDDEPNKSISELVKE  262 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga-~--~v~~~~~~~~~~~~~~~~~  262 (332)
                      ...++++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|. +  .++..+.   .++    ..
T Consensus        17 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~----~~   88 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH---QNM----DK   88 (197)
T ss_dssp             HHHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG---GGG----GG
T ss_pred             HhcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH---HHH----hh
Confidence            34678999999999977 788888888864 2399999999988876654    343 1  2333221   111    11


Q ss_pred             hcCCCCccEEEEcCCC---------------hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          263 MTHGTGVDYGFECTGV---------------ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~---------------~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ..+ ..||+|+...+-               ...+..+.+.|+++ |++++....
T Consensus        89 ~~~-~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~~  141 (197)
T 3eey_A           89 YID-CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG-GIITVVIYY  141 (197)
T ss_dssp             TCC-SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE-EEEEEEECC
T ss_pred             hcc-CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC-CEEEEEEcc
Confidence            222 379999976532               24788999999998 999887543

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.71  E-value=0.012  Score=51.89  Aligned_cols=78  Identities=18%  Similarity=0.179  Sum_probs=50.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHH----HHHcCCCee-e--CCCCCCCchHHHHHH---Hh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK-NPCRKDK----GEAFGMTDF-I--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~-~~~~~~~----~~~lga~~v-~--~~~~~~~~~~~~~~~---~~  263 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++ +.++.+.    +++.|.... +  |..+  .+++.+.+.   +.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~v~~~~~~~~~~  103 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQ--ESEVEALFAAVIER  103 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            5788999998 9999999999999999 8988877 4444432    233444322 2  3332  233333332   33


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus       104 ~g--~id~lv~nAg~  116 (269)
T 4dmm_A          104 WG--RLDVLVNNAGI  116 (269)
T ss_dssp             HS--CCCEEEECCCC
T ss_pred             cC--CCCEEEECCCC
Confidence            32  58999999874

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.71  E-value=0.0044  Score=54.95  Aligned_cols=80  Identities=16%  Similarity=0.273  Sum_probs=50.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc---CCCe-e--eCCCCCCCchHHHHHHHhcCCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF---GMTD-F--INPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l---ga~~-v--~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++++..+.++++   +... .  .|..+  .++..+.........+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~g~  106 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADGGGSAEAVVADLAD--LEGAANVAEELAATRR  106 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTC--HHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHhcCC
Confidence            5789999998 9999999999999999 899999765444444433   3321 2  23332  2222222111111126


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|++|+++|.
T Consensus       107 iD~lv~nAg~  116 (273)
T 3uf0_A          107 VDVLVNNAGI  116 (273)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999884

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.71  E-value=0.0087  Score=53.37  Aligned_cols=73  Identities=18%  Similarity=0.203  Sum_probs=53.7

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~  278 (332)
                      +|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...        .+..+.+.      ..|+||.++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~~~~------~advvi~~v~~   67 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGARQA--------SSPAEVCA------ACDITIAMLAD   67 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTCEEC--------SCHHHHHH------HCSEEEECCSS
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec--------CCHHHHHH------cCCEEEEEcCC
Confidence            68899999999999888888898 89999999999888877775321        22333332      36888888887


Q ss_pred             hHHHHHHH
Q 043260          279 ASLISEAL  286 (332)
Q Consensus       279 ~~~~~~~~  286 (332)
                      +..+...+
T Consensus        68 ~~~~~~v~   75 (287)
T 3pdu_A           68 PAAAREVC   75 (287)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54554444

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.71  E-value=0.024  Score=49.26  Aligned_cols=104  Identities=15%  Similarity=0.196  Sum_probs=63.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHHc--CCC-eee--CCCCCCC-chHHHHHH---Hh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPC--RKDKGEAF--GMT-DFI--NPDDEPN-KSISELVK---EM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~--~~~~~~~l--ga~-~v~--~~~~~~~-~~~~~~~~---~~  263 (332)
                      .++++||+|+ |++|..+++.+...|++.|++++++.+  ..+.+++.  +.. .++  |..+  . +++.+.+.   +.
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTV--PVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS--CHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCC--ChHHHHHHHHHHHHh
Confidence            4688999998 999999999999999834888888763  33333332  222 122  3332  2 23333333   22


Q ss_pred             cCCCCccEEEEcCCCh-----------------HHHHHHHHHhcc-----CCcEEEEEcCCCC
Q 043260          264 THGTGVDYGFECTGVA-----------------SLISEALEATKL-----GKGKVMAIGAANE  304 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~-----------------~~~~~~~~~l~~-----~~G~~v~~G~~~~  304 (332)
                      .+  ++|++|+++|..                 ..++.++..+.+     . |+++.+++...
T Consensus        82 ~g--~id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~-g~iv~isS~~~  141 (254)
T 1sby_A           82 LK--TVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPG-GIIANICSVTG  141 (254)
T ss_dssp             HS--CCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC-EEEEEECCGGG
T ss_pred             cC--CCCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCC-CEEEEECchhh
Confidence            22  589999999831                 012334444433     4 88999987543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.70  E-value=0.006  Score=53.84  Aligned_cols=79  Identities=15%  Similarity=0.310  Sum_probs=53.4

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H----HcCCCe-ee--CCCCCCCchHHHHHH---H
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-E----AFGMTD-FI--NPDDEPNKSISELVK---E  262 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~----~lga~~-v~--~~~~~~~~~~~~~~~---~  262 (332)
                      -.++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ +    +.|... .+  |..+  .+++.+.+.   +
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   95 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN--YEEVKKLLEAVKE   95 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHH
Confidence            35788999998 9999999999999999 999999988776532 2    235432 22  3332  233333332   2


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      ..+  ++|++|+++|.
T Consensus        96 ~~g--~iD~lvnnAg~  109 (267)
T 1vl8_A           96 KFG--KLDTVVNAAGI  109 (267)
T ss_dssp             HHS--CCCEEEECCCC
T ss_pred             HcC--CCCEEEECCCc
Confidence            222  58999999884

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.70  E-value=0.0096  Score=52.76  Aligned_cols=99  Identities=13%  Similarity=0.152  Sum_probs=70.1

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc----CCC---eeeCCCCCCCchHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF----GMT---DFINPDDEPNKSISELV  260 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l----ga~---~v~~~~~~~~~~~~~~~  260 (332)
                      +.+..++.++++||-+|+|. |..+..+++..|. +|++++.+++..+.+++.    |..   .++.. +         +
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~-d---------~  123 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-G---------W  123 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-C---------G
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC-C---------h
Confidence            33556788999999999977 7788888877898 999999999888777553    322   12211 1         1


Q ss_pred             HHhcCCCCccEEEEc-----CC--C-hHHHHHHHHHhccCCcEEEEEcC
Q 043260          261 KEMTHGTGVDYGFEC-----TG--V-ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       261 ~~~~~~~g~d~vid~-----~g--~-~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      .++.  ..||+|+..     .+  . ...+..+.+.|+|+ |++++...
T Consensus       124 ~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  169 (287)
T 1kpg_A          124 EQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHTI  169 (287)
T ss_dssp             GGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred             hhCC--CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC-CEEEEEEe
Confidence            1222  379999975     22  1 34678999999998 99887543

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.70  E-value=0.0038  Score=54.81  Aligned_cols=78  Identities=17%  Similarity=0.309  Sum_probs=52.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc----CCCe-ee--CCCCCCCchHHHHHH---Hh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF----GMTD-FI--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l----ga~~-v~--~~~~~~~~~~~~~~~---~~  263 (332)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ +++    +... .+  |..+  .+++.+.+.   +.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT--PEGVDAVVESVRSS   82 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4688999998 9999999999999999 999999988776533 222    5332 22  3332  233333332   22


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus        83 ~g--~id~lv~~Ag~   95 (263)
T 3ai3_A           83 FG--GADILVNNAGT   95 (263)
T ss_dssp             HS--SCSEEEECCCC
T ss_pred             cC--CCCEEEECCCC
Confidence            22  58999999873

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.70  E-value=0.0038  Score=54.60  Aligned_cols=78  Identities=17%  Similarity=0.193  Sum_probs=53.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCe-e--eCCCCCCCchHHHHHHH---hcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTD-F--INPDDEPNKSISELVKE---MTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~-v--~~~~~~~~~~~~~~~~~---~~~~~  267 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++... .  .|..+  .+++.+.+.+   ..+  
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g--   78 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI--EEDWQRVVAYAREEFG--   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC--HHHHHHHHHHHHHHHS--
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEecCCC--HHHHHHHHHHHHHHcC--
Confidence            4688999998 9999999999999999 999999998776543 4454322 2  23332  2333333332   222  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus        79 ~iD~lv~nAg~   89 (254)
T 1hdc_A           79 SVDGLVNNAGI   89 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            58999999874

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.69  E-value=0.014  Score=50.31  Aligned_cols=76  Identities=13%  Similarity=0.116  Sum_probs=51.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCeee--CCCCCCCchHHHHHHHhcCCCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTDFI--NPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~v~--~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      +++++||+|+ |.+|..+++.+...|+ +|++++++.++.+.+. +.....++  |..+  .+++.+.+.   .-..+|+
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~---~~~~id~   79 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD--WDATEKALG---GIGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHT---TCCCCSE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCCcEEecCCC--HHHHHHHHH---HcCCCCE
Confidence            5688999998 9999999999999999 9999999887765443 33222333  3222  122222222   1125899


Q ss_pred             EEEcCC
Q 043260          272 GFECTG  277 (332)
Q Consensus       272 vid~~g  277 (332)
                      ||+++|
T Consensus        80 vi~~Ag   85 (244)
T 1cyd_A           80 LVNNAA   85 (244)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999988

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.69  E-value=0.0055  Score=53.31  Aligned_cols=78  Identities=21%  Similarity=0.250  Sum_probs=53.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCCe-ee--CCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMTD-FI--NPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~~-v~--~~~~~~~~~~~~~~~---~~~  264 (332)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+.    +.+... .+  |..+  .+++.+.+.   +..
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSD--PESAKAMADRTLAEF   84 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            5788999998 9999999999999999 8999999988765432    234322 22  3322  233333322   222


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  ++|++|+++|.
T Consensus        85 g--~id~li~~Ag~   96 (253)
T 3qiv_A           85 G--GIDYLVNNAAI   96 (253)
T ss_dssp             S--CCCEEEECCCC
T ss_pred             C--CCCEEEECCCc
Confidence            2  59999999875

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.69  E-value=0.0028  Score=54.24  Aligned_cols=102  Identities=16%  Similarity=0.056  Sum_probs=69.7

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcC-----CCeEEEEcCCcchHHHHHHc----C-----CC--eeeCCCCCCCchH
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQG-----AAKIIGIDKNPCRKDKGEAF----G-----MT--DFINPDDEPNKSI  256 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G-----~~~Vi~~~~~~~~~~~~~~l----g-----a~--~v~~~~~~~~~~~  256 (332)
                      .++++++||-+|+|. |..+..+++..+     ..+|+.++.+++..+.+++.    +     .+  .++..+.  ....
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~--~~~~  153 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI--YQVN  153 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG--GGCC
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh--Hhcc
Confidence            578999999999977 888888888876     23899999999888766542    3     22  2222211  0111


Q ss_pred             HHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcC
Q 043260          257 SELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       257 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      .+....   ...||+|+........+..+.+.|+++ |++++.-.
T Consensus       154 ~~~~~~---~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lv~~~~  194 (227)
T 2pbf_A          154 EEEKKE---LGLFDAIHVGASASELPEILVDLLAEN-GKLIIPIE  194 (227)
T ss_dssp             HHHHHH---HCCEEEEEECSBBSSCCHHHHHHEEEE-EEEEEEEE
T ss_pred             cccCcc---CCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEEc
Confidence            000011   226999999877666678999999998 98887644

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.008  Score=52.51  Aligned_cols=103  Identities=20%  Similarity=0.309  Sum_probs=64.4

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcC--CCeEEEEcCCcchHHHH-HHcCCCee-e--CCCCCCCchHHHHHH---HhcCC
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQG--AAKIIGIDKNPCRKDKG-EAFGMTDF-I--NPDDEPNKSISELVK---EMTHG  266 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G--~~~Vi~~~~~~~~~~~~-~~lga~~v-~--~~~~~~~~~~~~~~~---~~~~~  266 (332)
                      |+++||+|+ +++|.++++.+...|  . .|+.+++++++.+.+ ++++.... +  |..+  .++..+.+.   +..+ 
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g-   77 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKYGDRFFYVVGDITE--DSVLKQLVNAAVKGHG-   77 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHHGGGEEEEESCTTS--HHHHHHHHHHHHHHHS-
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHhcC-
Confidence            578999998 999999888777665  5 888899998877654 34453322 2  3332  233333332   2222 


Q ss_pred             CCccEEEEcCCCh-----------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          267 TGVDYGFECTGVA-----------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       267 ~g~d~vid~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                       ++|++|+++|..           +               ..+.++..+.+.+|+++.+++...
T Consensus        78 -~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~  140 (254)
T 3kzv_A           78 -KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDAC  140 (254)
T ss_dssp             -CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCC
T ss_pred             -CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchh
Confidence             589999998841           0               122334444442389999988664

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.68  E-value=0.0045  Score=54.26  Aligned_cols=77  Identities=14%  Similarity=0.229  Sum_probs=53.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-Hc---CCCe-ee--CCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AF---GMTD-FI--NPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~l---ga~~-v~--~~~~~~~~~~~~~~~---~~~  264 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++   +... .+  |..+  .++..+.+.   +..
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRN--TDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4788999998 9999999999999999 8999999988776543 32   3222 22  3332  233333332   222


Q ss_pred             CCCCccEEEEcCC
Q 043260          265 HGTGVDYGFECTG  277 (332)
Q Consensus       265 ~~~g~d~vid~~g  277 (332)
                      +  +.|++|+++|
T Consensus        82 g--~id~lv~nAg   92 (257)
T 3imf_A           82 G--RIDILINNAA   92 (257)
T ss_dssp             S--CCCEEEECCC
T ss_pred             C--CCCEEEECCC
Confidence            2  5899999998

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.68  E-value=0.0073  Score=53.49  Aligned_cols=97  Identities=13%  Similarity=0.077  Sum_probs=64.2

Q ss_pred             EEEEECC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      +|||+|+ |.+|..+++.+... |. +|++++++.++.+.+...+...+ .|..+      .+.+.+...  ++|+||.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~~~~~v~~~~~D~~d------~~~l~~~~~--~~d~vi~~   72 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDDWRGKVSVRQLDYFN------QESMVEAFK--GMDTVVFI   72 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGGGBTTBEEEECCTTC------HHHHHHHTT--TCSEEEEC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHhhhCCCEEEEcCCCC------HHHHHHHHh--CCCEEEEe
Confidence            6999998 99999999988887 87 89999998877544433344322 23322      123444433  69999999


Q ss_pred             CCCh-------HHHHHHHHHhccCC-cEEEEEcCCCC
Q 043260          276 TGVA-------SLISEALEATKLGK-GKVMAIGAANE  304 (332)
Q Consensus       276 ~g~~-------~~~~~~~~~l~~~~-G~~v~~G~~~~  304 (332)
                      ++..       .....+++.++..+ ++++.+++...
T Consensus        73 a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~  109 (289)
T 3e48_A           73 PSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYAD  109 (289)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred             CCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccCC
Confidence            8852       22345556665542 47888887654

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.68  E-value=0.0061  Score=53.20  Aligned_cols=78  Identities=15%  Similarity=0.179  Sum_probs=50.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHH---h
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK-NPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKE---M  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~-~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~---~  263 (332)
                      .++++||+|+ |++|..+++.+...|+ +|+++++ ++++.+.+    ++.+... ++  |..+  .+++.+.+.+   .
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV--ESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999998 9999999999999999 8999998 66555432    2234322 22  3322  2333333332   2


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus        83 ~g--~id~li~~Ag~   95 (261)
T 1gee_A           83 FG--KLDVMINNAGL   95 (261)
T ss_dssp             HS--CCCEEEECCCC
T ss_pred             cC--CCCEEEECCCC
Confidence            22  58999999873

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.67  E-value=0.0073  Score=52.57  Aligned_cols=102  Identities=18%  Similarity=0.144  Sum_probs=72.2

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC----eeeCCCCCCCchHHHHHHHh
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT----DFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~----~v~~~~~~~~~~~~~~~~~~  263 (332)
                      +.+...++++++||-+|+| .|..+..+++..+. +|+++|.+++.++.+++....    .++..+.   .+.      .
T Consensus        47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~------~  115 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEANDI---LTK------E  115 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECCT---TTC------C
T ss_pred             HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc---ccC------C
Confidence            3355577899999999998 48888888887787 999999999999988876432    2222211   110      1


Q ss_pred             cCCCCccEEEEcCCC--------hHHHHHHHHHhccCCcEEEEEcC
Q 043260          264 THGTGVDYGFECTGV--------ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       264 ~~~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      .....||+|+....-        ...+..+.+.|+|+ |++++...
T Consensus       116 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  160 (266)
T 3ujc_A          116 FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT-GTLLITDY  160 (266)
T ss_dssp             CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC-CEEEEEEe
Confidence            123479999986432        13478889999998 99888754

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.67  E-value=0.0036  Score=53.59  Aligned_cols=89  Identities=13%  Similarity=0.187  Sum_probs=60.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      .++++||+|+ +++|.+.++.+...|+ +|++++++.+             .|..+  .++..+.+.+.  + ++|++|+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~-------------~D~~~--~~~v~~~~~~~--g-~id~lv~   65 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG-------------LDISD--EKSVYHYFETI--G-AFDHLIV   65 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT-------------CCTTC--HHHHHHHHHHH--C-SEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc-------------cCCCC--HHHHHHHHHHh--C-CCCEEEE
Confidence            4678999998 9999999999888898 9999987754             23333  23344444443  2 6899999


Q ss_pred             cCCCh-----------H---------------HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          275 CTGVA-----------S---------------LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       275 ~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      +.|..           +               ..+.++..++++ |+++.+++...
T Consensus        66 nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~~sS~~~  120 (223)
T 3uce_A           66 TAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQG-GSITLTSGMLS  120 (223)
T ss_dssp             CCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEE-EEEEEECCGGG
T ss_pred             CCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCC-eEEEEecchhh
Confidence            98842           0               122333445566 89999987543

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.66  E-value=0.025  Score=50.41  Aligned_cols=40  Identities=10%  Similarity=0.117  Sum_probs=34.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGID-KNPCRKDK  236 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~-~~~~~~~~  236 (332)
                      .++++||+|+ |++|.++++.+...|+ +|++++ +++++.+.
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~   49 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANA   49 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHH
Confidence            4678999998 9999999999999999 999999 88876653

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.66  E-value=0.0059  Score=54.00  Aligned_cols=79  Identities=18%  Similarity=0.246  Sum_probs=53.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-e--eCCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-F--INPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~~~---~~~  264 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.|... .  .|..+  .+++.+.+.   +..
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS--RTERDKLMQTVAHVF   96 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5788999998 9999999999999999 999999998776533    2234432 2  23332  233333332   222


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      ++ ++|++|+++|.
T Consensus        97 ~g-~id~lv~nAg~  109 (273)
T 1ae1_A           97 DG-KLNILVNNAGV  109 (273)
T ss_dssp             TS-CCCEEEECCCC
T ss_pred             CC-CCcEEEECCCC
Confidence            13 69999999884

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.66  E-value=0.0034  Score=54.57  Aligned_cols=75  Identities=7%  Similarity=0.006  Sum_probs=52.3

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEE-c--CCcchHHHH-HHc-CCCeeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGI-D--KNPCRKDKG-EAF-GMTDFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~-~--~~~~~~~~~-~~l-ga~~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      ++++||+|+ |++|.++++.+...|+ +|+++ +  +++++.+.+ +++ +. .+.+..  ....+.+.+.+..+  ++|
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~g--~iD   74 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGT-IALAEQ--KPERLVDATLQHGE--AID   74 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTE-EECCCC--CGGGHHHHHGGGSS--CEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCC-cccCHH--HHHHHHHHHHHHcC--CCC
Confidence            467899998 9999999999999999 99999 6  888776644 444 33 233322  23444444444432  599


Q ss_pred             EEEEcCC
Q 043260          271 YGFECTG  277 (332)
Q Consensus       271 ~vid~~g  277 (332)
                      ++|+++|
T Consensus        75 ~lv~~Ag   81 (244)
T 1zmo_A           75 TIVSNDY   81 (244)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.66  E-value=0.0041  Score=54.79  Aligned_cols=77  Identities=19%  Similarity=0.189  Sum_probs=52.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc-----CCCe-ee--CCCCCCCchHHHHHH---H
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF-----GMTD-FI--NPDDEPNKSISELVK---E  262 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l-----ga~~-v~--~~~~~~~~~~~~~~~---~  262 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +++     +... .+  |..+  .+++.+.+.   +
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   88 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD--EAQVEAYVTATTE   88 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            5788999998 9999999999999999 999999998776533 222     4332 22  3332  233333333   2


Q ss_pred             hcCCCCccEEEEcCC
Q 043260          263 MTHGTGVDYGFECTG  277 (332)
Q Consensus       263 ~~~~~g~d~vid~~g  277 (332)
                      ..+  ++|++|+++|
T Consensus        89 ~~g--~id~lv~nAg  101 (267)
T 1iy8_A           89 RFG--RIDGFFNNAG  101 (267)
T ss_dssp             HHS--CCSEEEECCC
T ss_pred             HcC--CCCEEEECCC
Confidence            222  5899999987

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.66  E-value=0.0053  Score=54.52  Aligned_cols=78  Identities=14%  Similarity=0.153  Sum_probs=53.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCC-eee--CCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMT-DFI--NPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~-~v~--~~~~~~~~~~~~~~~---~~~  264 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.|.. ..+  |..+  .+++.+.+.   +..
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQ--PDQVRGMLDQMTGEL  107 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            5789999998 9999999999999999 999999988776543    233432 222  3332  233333333   223


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  ++|++|+++|.
T Consensus       108 g--~iD~lvnnAg~  119 (276)
T 3r1i_A          108 G--GIDIAVCNAGI  119 (276)
T ss_dssp             S--CCSEEEECCCC
T ss_pred             C--CCCEEEECCCC
Confidence            2  59999999884

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.66  E-value=0.012  Score=51.69  Aligned_cols=79  Identities=22%  Similarity=0.358  Sum_probs=52.7

Q ss_pred             CCCCEEEEECC-C-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH---cCCC--eee--CCCCCCCchHHHHHH---
Q 043260          195 EKGSSVAVFGL-G-AVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA---FGMT--DFI--NPDDEPNKSISELVK---  261 (332)
Q Consensus       195 ~~g~~vlV~G~-g-~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~---lga~--~v~--~~~~~~~~~~~~~~~---  261 (332)
                      -.++++||+|+ | ++|..+++.+...|+ +|++++++.++.+.+ ++   .+..  .++  |..+  .+++.+.+.   
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~   96 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS--TEAVDALITQTV   96 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCC--HHHHHHHHHHHH
Confidence            35789999998 7 799999999999999 899999998876543 22   2322  222  3332  233333333   


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +..+  .+|++|+++|.
T Consensus        97 ~~~g--~id~li~~Ag~  111 (266)
T 3o38_A           97 EKAG--RLDVLVNNAGL  111 (266)
T ss_dssp             HHHS--CCCEEEECCCC
T ss_pred             HHhC--CCcEEEECCCc
Confidence            2222  58999999984

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.66  E-value=0.0066  Score=55.19  Aligned_cols=76  Identities=17%  Similarity=0.237  Sum_probs=51.2

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC---cchHHH-HHHc----CCC-eeeCCCCCCCchHHHHHHHhcC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN---PCRKDK-GEAF----GMT-DFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~---~~~~~~-~~~l----ga~-~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      -.|+++||+|+|++|.+++..+...|+++|+++.|+   .+|.+. ++++    +.. .++...+     . +.+.+...
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~-----~-~~l~~~l~  225 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED-----H-EQLRKEIA  225 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-----H-HHHHHHHH
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch-----H-HHHHhhhc
Confidence            368899999999999999999999999889999998   555443 2332    321 2333322     1 11222211


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                        .+|+||++++.
T Consensus       226 --~aDiIINaTp~  236 (315)
T 3tnl_A          226 --ESVIFTNATGV  236 (315)
T ss_dssp             --TCSEEEECSST
T ss_pred             --CCCEEEECccC
Confidence              48999999874

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.65  E-value=0.0064  Score=53.93  Aligned_cols=78  Identities=19%  Similarity=0.198  Sum_probs=52.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~---~~~  264 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.|... .+  |..+  .+++.+.+.   +..
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS--VPEIEALVAAVVERY   97 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            4688999998 9999999999999999 999999998776532    2235432 22  3332  233333333   222


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                       + ++|++|+++|.
T Consensus        98 -g-~iD~lv~~Ag~  109 (277)
T 2rhc_B           98 -G-PVDVLVNNAGR  109 (277)
T ss_dssp             -C-SCSEEEECCCC
T ss_pred             -C-CCCEEEECCCC
Confidence             2 59999999873

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.65  E-value=0.0074  Score=53.90  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=52.3

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH---cCCC--ee--eCCCCCCC-chHH---HHHH
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA---FGMT--DF--INPDDEPN-KSIS---ELVK  261 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~---lga~--~v--~~~~~~~~-~~~~---~~~~  261 (332)
                      ..++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ ++   .+..  .+  .|..+  . ++..   +.+.
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~~v~~~~~~~~   86 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTD--PIATMSSLADFIK   86 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTS--CHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCC--cHHHHHHHHHHHH
Confidence            45788999998 9999999999999999 999999998776432 22   2322  12  23333  2 2222   2333


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +..+  ++|++|+++|.
T Consensus        87 ~~~g--~iD~lv~nAg~  101 (311)
T 3o26_A           87 THFG--KLDILVNNAGV  101 (311)
T ss_dssp             HHHS--SCCEEEECCCC
T ss_pred             HhCC--CCCEEEECCcc
Confidence            3332  59999999985

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.65  E-value=0.0064  Score=53.85  Aligned_cols=82  Identities=21%  Similarity=0.289  Sum_probs=53.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCeeeCCCCC-CCchHHHHHHHhcC-CCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDFINPDDE-PNKSISELVKEMTH-GTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v~~~~~~-~~~~~~~~~~~~~~-~~g  268 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.|.......-+. +.+++.+.+.+... ..+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            5788999998 9999999999999999 999999998776533    23354432211111 22333333332211 115


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|++|+++|.
T Consensus       104 iD~lv~nAg~  113 (271)
T 4ibo_A          104 VDILVNNAGI  113 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999884

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.64  E-value=0.009  Score=51.59  Aligned_cols=78  Identities=19%  Similarity=0.251  Sum_probs=49.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHH---h
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGI-DKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKE---M  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~-~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~---~  263 (332)
                      .++++||+|+ |++|..+++.+...|+ +|+++ .+++++.+.+    ++.+... .+  |..+  .+++.+.+.+   .
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKN--PEDVENMVKTAMDA   80 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTS--HHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHh
Confidence            4678999998 9999999999999998 89988 6666554432    2335432 22  3322  2333333322   2


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus        81 ~~--~~d~vi~~Ag~   93 (247)
T 2hq1_A           81 FG--RIDILVNNAGI   93 (247)
T ss_dssp             HS--CCCEEEECC--
T ss_pred             cC--CCCEEEECCCC
Confidence            22  58999999874

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.64  E-value=0.0069  Score=53.99  Aligned_cols=78  Identities=10%  Similarity=0.164  Sum_probs=53.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc---CCCe-ee--CCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF---GMTD-FI--NPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l---ga~~-v~--~~~~~~~~~~~~~~~---~~~  264 (332)
                      +++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ +++   |... .+  |..+  .++..+.+.   +..
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSD--ELQMRNAVRDLVLKF  103 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            5788999998 9999999999999999 999999998876543 333   3332 22  3332  233333333   333


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  ++|++|+++|.
T Consensus       104 g--~iD~lVnnAg~  115 (283)
T 3v8b_A          104 G--HLDIVVANAGI  115 (283)
T ss_dssp             S--CCCEEEECCCC
T ss_pred             C--CCCEEEECCCC
Confidence            2  59999999884

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.63  E-value=0.0066  Score=53.95  Aligned_cols=79  Identities=15%  Similarity=0.198  Sum_probs=52.2

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee---eCCCCCCCchHHHHHH---Hh
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF---INPDDEPNKSISELVK---EM  263 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~~~---~~  263 (332)
                      ..++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.|.+..   .|..+  .++..+.+.   +.
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~   98 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTS--TDEVHAAVAAAVER   98 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            46789999998 9999999999999999 899999998876543    22344322   23332  233333332   22


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  +.|++|+++|.
T Consensus        99 ~g--~id~lv~nAg~  111 (279)
T 3sju_A           99 FG--PIGILVNSAGR  111 (279)
T ss_dssp             HC--SCCEEEECCCC
T ss_pred             cC--CCcEEEECCCC
Confidence            32  58999999884

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.63  E-value=0.018  Score=52.00  Aligned_cols=91  Identities=16%  Similarity=0.104  Sum_probs=64.6

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      ...+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...        .+..+.+.      ..|+||.+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~e~~~------~aDvVi~~   72 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGAHLC--------ESVKAALS------ASPATIFV   72 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTCEEC--------SSHHHHHH------HSSEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeec--------CCHHHHHh------cCCEEEEE
Confidence            34679999999999999999999998 89999999999888877775321        23333332      36899999


Q ss_pred             CCChHHHHHHH-----HHhccCCcEEEEEcCC
Q 043260          276 TGVASLISEAL-----EATKLGKGKVMAIGAA  302 (332)
Q Consensus       276 ~g~~~~~~~~~-----~~l~~~~G~~v~~G~~  302 (332)
                      +..+..+...+     ..+.++ ..++..+..
T Consensus        73 vp~~~~~~~v~~~~~l~~~~~g-~ivid~st~  103 (306)
T 3l6d_A           73 LLDNHATHEVLGMPGVARALAH-RTIVDYTTN  103 (306)
T ss_dssp             CSSHHHHHHHHTSTTHHHHTTT-CEEEECCCC
T ss_pred             eCCHHHHHHHhcccchhhccCC-CEEEECCCC
Confidence            98765444433     334554 566666543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.63  E-value=0.0048  Score=54.10  Aligned_cols=78  Identities=18%  Similarity=0.275  Sum_probs=52.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---HcCCCe-ee--CCCCCCCchHHHHHHH---hc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-E---AFGMTD-FI--NPDDEPNKSISELVKE---MT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~---~lga~~-v~--~~~~~~~~~~~~~~~~---~~  264 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +   +.|... .+  |..+  .+++.+.+.+   ..
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS--RSERQELMNTVANHF   84 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            5788999998 9999999999999999 999999988776532 2   234331 22  3332  2333333332   22


Q ss_pred             CCCCccEEEEcCC
Q 043260          265 HGTGVDYGFECTG  277 (332)
Q Consensus       265 ~~~g~d~vid~~g  277 (332)
                      ++ ++|++|+++|
T Consensus        85 ~g-~id~lv~~Ag   96 (260)
T 2ae2_A           85 HG-KLNILVNNAG   96 (260)
T ss_dssp             TT-CCCEEEECCC
T ss_pred             CC-CCCEEEECCC
Confidence            12 6999999988

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.63  E-value=0.0057  Score=54.06  Aligned_cols=77  Identities=23%  Similarity=0.312  Sum_probs=51.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHH---hc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKE---MT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~---~~  264 (332)
                      .++++||+|+ |++|..++..+...|+ +|++++++.++.+.+    ++.+... .+  |..+  .+++.+.+.+   ..
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~  109 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISD--PKSVEETISQQEKDF  109 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCC--HHHHHHHHHHHHHHh
Confidence            4688999998 9999999998888898 899999887665433    2234332 22  3322  2333333332   22


Q ss_pred             CCCCccEEEEcCC
Q 043260          265 HGTGVDYGFECTG  277 (332)
Q Consensus       265 ~~~g~d~vid~~g  277 (332)
                      +  .+|++|+++|
T Consensus       110 g--~id~li~~Ag  120 (279)
T 3ctm_A          110 G--TIDVFVANAG  120 (279)
T ss_dssp             S--CCSEEEECGG
T ss_pred             C--CCCEEEECCc
Confidence            2  5899999887

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.62  E-value=0.013  Score=55.42  Aligned_cols=97  Identities=16%  Similarity=0.216  Sum_probs=69.2

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      .+++|+|+|.|.+|..+++.++..|. +|++++.++++.+.+++.|...++ |..+   .   +.+++. +-..+|+||-
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~GDat~---~---~~L~~a-gi~~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFYGDATR---M---DLLESA-GAAKAEVLIN   74 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEESCTTC---H---HHHHHT-TTTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEEcCCCC---H---HHHHhc-CCCccCEEEE
Confidence            35679999999999999999999998 999999999999999998876443 3222   2   223332 3347999999


Q ss_pred             cCCChHHH---HHHHHHhccCCcEEEEEcC
Q 043260          275 CTGVASLI---SEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       275 ~~g~~~~~---~~~~~~l~~~~G~~v~~G~  301 (332)
                      ++++...-   ....+.+.+. .+++.-..
T Consensus        75 ~~~~~~~n~~i~~~ar~~~p~-~~Iiara~  103 (413)
T 3l9w_A           75 AIDDPQTNLQLTEMVKEHFPH-LQIIARAR  103 (413)
T ss_dssp             CCSSHHHHHHHHHHHHHHCTT-CEEEEEES
T ss_pred             CCCChHHHHHHHHHHHHhCCC-CeEEEEEC
Confidence            99986432   3444455555 56665443

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.62  E-value=0.0039  Score=55.05  Aligned_cols=80  Identities=16%  Similarity=0.258  Sum_probs=51.9

Q ss_pred             CCCEEEEEC---CChHHHHHHHHHHHcCCCeEEEEcCCcch-HH-HHHHcCCC-ee--eCCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFG---LGAVGLGVMDRARIQGAAKIIGIDKNPCR-KD-KGEAFGMT-DF--INPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G---~g~vG~~~~~la~~~G~~~Vi~~~~~~~~-~~-~~~~lga~-~v--~~~~~~~~~~~~~~~~---~~~  264 (332)
                      .++++||+|   +|++|.++++.+...|+ +|+++++++++ .+ ..++++.. ..  .|..+  .+++.+.+.   +..
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   82 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN--EEHLASLAGRVTEAI   82 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCCCceEEEccCCC--HHHHHHHHHHHHHHh
Confidence            578899998   48999999999999999 89999988765 23 33445432 12  23332  233333333   222


Q ss_pred             C-CCCccEEEEcCCC
Q 043260          265 H-GTGVDYGFECTGV  278 (332)
Q Consensus       265 ~-~~g~d~vid~~g~  278 (332)
                      + ..++|++|+++|.
T Consensus        83 g~~~~iD~lv~nAg~   97 (269)
T 2h7i_A           83 GAGNKLDGVVHSIGF   97 (269)
T ss_dssp             CTTCCEEEEEECCCC
T ss_pred             CCCCCceEEEECCcc
Confidence            2 1258999999873

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.62  E-value=0.012  Score=53.92  Aligned_cols=89  Identities=15%  Similarity=0.146  Sum_probs=62.9

Q ss_pred             CEEEEECCChHHHHHHHHHH-Hc-CCCeE-EEEcCCcchHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          198 SSVAVFGLGAVGLGVMDRAR-IQ-GAAKI-IGIDKNPCRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~-~~-G~~~V-i~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      -+|.|+|+|.+|...++.++ .. ++ ++ .+.++++++.+ .++++|...+++       ++.+    +.....+|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~-~~vav~d~~~~~~~~~a~~~g~~~~~~-------~~~~----~l~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGV-KLVAACALDSNQLEWAKNELGVETTYT-------NYKD----MIDTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSE-EEEEEECSCHHHHHHHHHTTCCSEEES-------CHHH----HHTTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCc-EEEEEecCCHHHHHHHHHHhCCCcccC-------CHHH----HhcCCCCCEEE
Confidence            47899999999998888776 43 66 54 56788888775 456678765542       2222    22333699999


Q ss_pred             EcCCChHHHHHHHHHhccCCcEEEEEc
Q 043260          274 ECTGVASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       274 d~~g~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      .++....+...+.++++.+  .-+++.
T Consensus        77 i~tp~~~h~~~~~~al~~G--~~v~~e  101 (346)
T 3cea_A           77 IVAPTPFHPEMTIYAMNAG--LNVFCE  101 (346)
T ss_dssp             ECSCGGGHHHHHHHHHHTT--CEEEEC
T ss_pred             EeCChHhHHHHHHHHHHCC--CEEEEc
Confidence            9999987888888888874  444443

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.62  E-value=0.0042  Score=54.33  Aligned_cols=78  Identities=22%  Similarity=0.343  Sum_probs=53.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCe-ee--CCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTD-FI--NPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~-v~--~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+. .++++... ++  |..+  .+++.+.+.   +..+  
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g--   85 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS--EKDVQTALALAKGKFG--   85 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHS--
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHHCC--
Confidence            5788999998 9999999999999999 99999998877654 44555432 22  3322  233333333   2222  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus        86 ~id~li~~Ag~   96 (265)
T 2o23_A           86 RVDVAVNCAGI   96 (265)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            59999999873

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.62  E-value=0.0056  Score=53.62  Aligned_cols=78  Identities=14%  Similarity=0.173  Sum_probs=53.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee-e--CCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF-I--NPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v-~--~~~~~~~~~~~~~~~---~~~  264 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++.++.+.+    ++.+.... +  |..+  .++..+.+.   +..
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTD--EQHREAVIKAALDQF   87 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5788999998 9999999999999999 899999998776543    23354322 2  3332  233333222   333


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  +.|++|+++|.
T Consensus        88 g--~id~lv~nAg~   99 (256)
T 3gaf_A           88 G--KITVLVNNAGG   99 (256)
T ss_dssp             S--CCCEEEECCCC
T ss_pred             C--CCCEEEECCCC
Confidence            2  58999999874

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.61  E-value=0.0094  Score=51.91  Aligned_cols=76  Identities=18%  Similarity=0.302  Sum_probs=49.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHHHHHHhcC-CCCccEE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISELVKEMTH-GTGVDYG  272 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~-~~g~d~v  272 (332)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.+.    ++.+...+ .|..+  .+++.+.+.+... -.++|++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~g~id~l   78 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ----EQYPFATEVMDVAD--AAQVAQVCQRLLAETERLDAL   78 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS----SCCSSEEEECCTTC--HHHHHHHHHHHHHHCSCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh----hcCCceEEEcCCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4688999998 9999999999999999 99999987653    22342211 23332  2333333332211 1158999


Q ss_pred             EEcCCC
Q 043260          273 FECTGV  278 (332)
Q Consensus       273 id~~g~  278 (332)
                      |+++|.
T Consensus        79 v~~Ag~   84 (250)
T 2fwm_X           79 VNAAGI   84 (250)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999884

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.61  E-value=0.0099  Score=52.09  Aligned_cols=78  Identities=15%  Similarity=0.153  Sum_probs=53.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCC-ee--eCCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMT-DF--INPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~-~v--~~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++... ..  .|..+  .+++.+.+.   +..+  
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d--~~~v~~~~~~~~~~~g--   85 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTK--RASVDAAMQKAIDALG--   85 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTC--HHHHHHHHHHHHHHHT--
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCC--HHHHHHHHHHHHHHcC--
Confidence            4789999998 9999999999999999 9999999987766443 34321 12  23332  233333332   2222  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus        86 ~iD~lv~~Ag~   96 (263)
T 3ak4_A           86 GFDLLCANAGV   96 (263)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            58999999883

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.61  E-value=0.0067  Score=53.81  Aligned_cols=77  Identities=14%  Similarity=0.175  Sum_probs=51.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCC--C-eee--CCCCCCCchHHHHHH---HhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGM--T-DFI--NPDDEPNKSISELVK---EMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga--~-~v~--~~~~~~~~~~~~~~~---~~~~  265 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +++..  . ..+  |..+  .+++.+.+.   +.. 
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~-  103 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSS--EAGARRLAQALGELS-  103 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTS--HHHHHHHHHHHHHHC-
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCC--HHHHHHHHHHHHHhc-
Confidence            4688999998 9999999999999998 999999988776533 33321  2 122  2222  233333332   222 


Q ss_pred             CCCccEEEEcCC
Q 043260          266 GTGVDYGFECTG  277 (332)
Q Consensus       266 ~~g~d~vid~~g  277 (332)
                      + ++|++|+++|
T Consensus       104 g-~iD~lvnnAg  114 (276)
T 2b4q_A          104 A-RLDILVNNAG  114 (276)
T ss_dssp             S-CCSEEEECCC
T ss_pred             C-CCCEEEECCC
Confidence            2 5899999988

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.61  E-value=0.0036  Score=56.21  Aligned_cols=78  Identities=18%  Similarity=0.216  Sum_probs=52.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc---CCCe--ee--CCCCCCCchHHHHH---HHh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF---GMTD--FI--NPDDEPNKSISELV---KEM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l---ga~~--v~--~~~~~~~~~~~~~~---~~~  263 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ +++   +...  .+  |..+  .+++.+.+   .+.
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD--PGSCADAARTVVDA  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC--HHHHHHHHHHHHHH
Confidence            5788999998 9999999999999999 999999998876543 333   3121  22  3332  23333322   233


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus       117 ~g--~iD~lvnnAg~  129 (293)
T 3rih_A          117 FG--ALDVVCANAGI  129 (293)
T ss_dssp             HS--CCCEEEECCCC
T ss_pred             cC--CCCEEEECCCC
Confidence            32  58999999884

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.61  E-value=0.0077  Score=53.23  Aligned_cols=76  Identities=20%  Similarity=0.290  Sum_probs=50.4

Q ss_pred             CCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee--eCCCCCCCchHHHHHH---HhcCC
Q 043260          193 KVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF--INPDDEPNKSISELVK---EMTHG  266 (332)
Q Consensus       193 ~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v--~~~~~~~~~~~~~~~~---~~~~~  266 (332)
                      ....|+++||+|+ |++|.++++.+...|+ +|+++++++++..     +....  .|..+  .++..+.+.   +..+ 
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~-----~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g-   80 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDV-----NVSDHFKIDVTN--EEEVKEAVEKTTKKYG-   80 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CT-----TSSEEEECCTTC--HHHHHHHHHHHHHHHS-
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhcc-----CceeEEEecCCC--HHHHHHHHHHHHHHcC-
Confidence            3457889999998 9999999999999999 9999998876541     11122  23333  233333332   2222 


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                       ++|++|+++|.
T Consensus        81 -~iD~lv~nAg~   91 (269)
T 3vtz_A           81 -RIDILVNNAGI   91 (269)
T ss_dssp             -CCCEEEECCCC
T ss_pred             -CCCEEEECCCc
Confidence             58999999884

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.61  E-value=0.006  Score=55.43  Aligned_cols=89  Identities=22%  Similarity=0.269  Sum_probs=62.0

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      -.|++|.|+|.|.+|...++.++.+|. +|++.+++.++. .++++|+...    +     +.+.+.      ..|+|+.
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~~----~-----l~ell~------~aDvVvl  202 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAKAV----S-----LEELLK------NSDVISL  202 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCEEC----C-----HHHHHH------HCSEEEE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCceec----C-----HHHHHh------hCCEEEE
Confidence            367899999999999999999999999 999999988765 4566775421    1     222221      3678887


Q ss_pred             cCCChH----HH-HHHHHHhccCCcEEEEEcC
Q 043260          275 CTGVAS----LI-SEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       275 ~~g~~~----~~-~~~~~~l~~~~G~~v~~G~  301 (332)
                      ++....    .+ ...++.++++ +.++.++.
T Consensus       203 ~~P~~~~t~~li~~~~l~~mk~g-a~lIn~ar  233 (313)
T 2ekl_A          203 HVTVSKDAKPIIDYPQFELMKDN-VIIVNTSR  233 (313)
T ss_dssp             CCCCCTTSCCSBCHHHHHHSCTT-EEEEESSC
T ss_pred             eccCChHHHHhhCHHHHhcCCCC-CEEEECCC
Confidence            776321    12 3556677776 66776664

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.60  E-value=0.0055  Score=53.80  Aligned_cols=78  Identities=15%  Similarity=0.247  Sum_probs=51.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHH----HHHcCCCe-ee--CCCCCCCchHHHHHHH---h
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK-NPCRKDK----GEAFGMTD-FI--NPDDEPNKSISELVKE---M  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~-~~~~~~~----~~~lga~~-v~--~~~~~~~~~~~~~~~~---~  263 (332)
                      .++++||+|+ |++|..+++.+...|+ +|+++++ +.++.+.    +++.+... .+  |..+  .+++.+.+.+   .
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK--PSEVVALFDKAVSH   96 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            4678999998 9999999999999998 8999888 6655443    23345442 22  3332  2333333332   2


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus        97 ~~--~~d~vi~~Ag~  109 (274)
T 1ja9_A           97 FG--GLDFVMSNSGM  109 (274)
T ss_dssp             HS--CEEEEECCCCC
T ss_pred             cC--CCCEEEECCCC
Confidence            22  58999998873

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.60  E-value=0.0035  Score=55.39  Aligned_cols=78  Identities=12%  Similarity=0.120  Sum_probs=51.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe-eeCCCCCCCchHHHHHH---HhcCCCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD-FINPDDEPNKSISELVK---EMTHGTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~~~---~~~~~~g~d  270 (332)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++++.+....... ..|..+  .+++.+.+.   +..+  ++|
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g--~iD   89 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKALNLPNTLCAQVDVTD--KYTFDTAITRAEKIYG--PAD   89 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTTCCTTEEEEECCTTC--HHHHHHHHHHHHHHHC--SEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHhhcCCceEEEecCCC--HHHHHHHHHHHHHHCC--CCC
Confidence            4688999998 9999999999999999 8999999877654332211111 123322  233333332   2222  589


Q ss_pred             EEEEcCCC
Q 043260          271 YGFECTGV  278 (332)
Q Consensus       271 ~vid~~g~  278 (332)
                      ++|+++|.
T Consensus        90 ~lvnnAg~   97 (266)
T 3p19_A           90 AIVNNAGM   97 (266)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999884

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.60  E-value=0.0039  Score=54.84  Aligned_cols=78  Identities=23%  Similarity=0.282  Sum_probs=52.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCC-C-eee--CCCCCCCchHHHHHH---Hh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGM-T-DFI--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga-~-~v~--~~~~~~~~~~~~~~~---~~  263 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++.++.+.+    ++.+. . ..+  |..+  .+++.+.+.   +.
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   85 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD--RAQCDALAGRAVEE   85 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5788999998 9999999999999999 999999998876543    22332 2 222  3322  233333222   32


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus        86 ~g--~id~lvnnAg~   98 (262)
T 3pk0_A           86 FG--GIDVVCANAGV   98 (262)
T ss_dssp             HS--CCSEEEECCCC
T ss_pred             hC--CCCEEEECCCC
Confidence            32  59999999883

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.59  E-value=0.0032  Score=54.35  Aligned_cols=98  Identities=13%  Similarity=0.138  Sum_probs=63.8

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      ++|||+|+ |.+|..+++.+...| . +|+++++++++.+.+...+...+ .|..+   .   +.+.+...  ++|+||.
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d---~---~~~~~~~~--~~D~vv~   94 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNSQIIMGDVLN---H---AALKQAMQ--GQDIVYA   94 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTEEEEECCTTC---H---HHHHHHHT--TCSEEEE
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCcEEEEecCCC---H---HHHHHHhc--CCCEEEE
Confidence            57999998 999999999999999 7 99999998876543222222221 12222   1   23333333  5899999


Q ss_pred             cCCChHH---HHHHHHHhccCC-cEEEEEcCCCC
Q 043260          275 CTGVASL---ISEALEATKLGK-GKVMAIGAANE  304 (332)
Q Consensus       275 ~~g~~~~---~~~~~~~l~~~~-G~~v~~G~~~~  304 (332)
                      +.+....   .+.+++.++..+ +++|.+++...
T Consensus        95 ~a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A           95 NLTGEDLDIQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             ECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             cCCCCchhHHHHHHHHHHHHcCCCEEEEEeccee
Confidence            9887432   344555555442 68999887553

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.59  E-value=0.016  Score=52.29  Aligned_cols=88  Identities=16%  Similarity=0.272  Sum_probs=62.8

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|.. +  .     .+..+.+.      .+|+||.++.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~--~-----~~~~~~~~------~~DvVi~av~   95 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGAR-L--G-----RTPAEVVS------TCDITFACVS   95 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTCE-E--C-----SCHHHHHH------HCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCCE-E--c-----CCHHHHHh------cCCEEEEeCC
Confidence            579999999999999988888898 899999999988877776653 1  1     22222232      4799999999


Q ss_pred             ChHHHHHHHH-------HhccCCcEEEEEcC
Q 043260          278 VASLISEALE-------ATKLGKGKVMAIGA  301 (332)
Q Consensus       278 ~~~~~~~~~~-------~l~~~~G~~v~~G~  301 (332)
                      ++..+...+.       .+.++ ..++.++.
T Consensus        96 ~~~~~~~v~~~~~~~~~~l~~~-~~vv~~s~  125 (316)
T 2uyy_A           96 DPKAAKDLVLGPSGVLQGIRPG-KCYVDMST  125 (316)
T ss_dssp             SHHHHHHHHHSTTCGGGGCCTT-CEEEECSC
T ss_pred             CHHHHHHHHcCchhHhhcCCCC-CEEEECCC
Confidence            6555655553       34454 56666654

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.58  E-value=0.0062  Score=56.24  Aligned_cols=90  Identities=14%  Similarity=0.219  Sum_probs=62.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      -.|++|.|+|.|.+|...++.++.+|. +|++.+++..+.+.++++|...+        .++.+.+    .  ..|+|+-
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~l~ell----~--~aDvV~l  226 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAKFV--------EDLNEML----P--KCDVIVI  226 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCEEC--------SCHHHHG----G--GCSEEEE
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCeEc--------CCHHHHH----h--cCCEEEE
Confidence            358899999999999999999999999 89999998777777777776432        1222221    1  3677777


Q ss_pred             cCCCh-H---HH-HHHHHHhccCCcEEEEEc
Q 043260          275 CTGVA-S---LI-SEALEATKLGKGKVMAIG  300 (332)
Q Consensus       275 ~~g~~-~---~~-~~~~~~l~~~~G~~v~~G  300 (332)
                      ++... .   .+ ...++.++++ ..++.++
T Consensus       227 ~~Plt~~t~~li~~~~l~~mk~g-ailIN~a  256 (351)
T 3jtm_A          227 NMPLTEKTRGMFNKELIGKLKKG-VLIVNNA  256 (351)
T ss_dssp             CSCCCTTTTTCBSHHHHHHSCTT-EEEEECS
T ss_pred             CCCCCHHHHHhhcHHHHhcCCCC-CEEEECc
Confidence            76631 1   12 4566677776 6666665

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.57  E-value=0.0025  Score=54.91  Aligned_cols=102  Identities=22%  Similarity=0.120  Sum_probs=68.9

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC--C--eeeCCCCCCCchHHHHHHHhcC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM--T--DFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga--~--~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      +...++++++||-+|+|. |..+..+++..|..+|+++|.+++..+.+++.-.  +  .++..+.   .+....  ....
T Consensus        68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~---~~~~~~--~~~~  141 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQEY--ANIV  141 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGGGG--TTTS
T ss_pred             cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC---CCcccc--cccC
Confidence            344678899999999987 8888889988874599999999988876655321  1  1221111   110000  0112


Q ss_pred             CCCccEEEEcCCCh---H-HHHHHHHHhccCCcEEEEE
Q 043260          266 GTGVDYGFECTGVA---S-LISEALEATKLGKGKVMAI  299 (332)
Q Consensus       266 ~~g~d~vid~~g~~---~-~~~~~~~~l~~~~G~~v~~  299 (332)
                       ..||+|+.....+   . .+..+.+.|+++ |++++.
T Consensus       142 -~~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  177 (230)
T 1fbn_A          142 -EKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA  177 (230)
T ss_dssp             -CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -ccEEEEEEecCChhHHHHHHHHHHHhCCCC-cEEEEE
Confidence             3699999776654   3 478889999998 998885

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.56  E-value=0.0082  Score=54.42  Aligned_cols=78  Identities=15%  Similarity=0.190  Sum_probs=49.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH-H---HHH-cCCC-eeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKD-K---GEA-FGMT-DFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~---~~~-lga~-~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      .+++|||+|+ |.+|..+++.+...|. +|++++++.++.+ .   +.+ .+.. .++..+-.+.+++.+.+.+    .+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~   78 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDA----HP   78 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHH----SC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhc----cC
Confidence            4678999998 9999999999999998 9999988665432 1   111 1322 2332221112333333332    36


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|+||++++.
T Consensus        79 ~d~vih~A~~   88 (341)
T 3enk_A           79 ITAAIHFAAL   88 (341)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECccc
Confidence            9999999874

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.55  E-value=0.0047  Score=53.59  Aligned_cols=75  Identities=17%  Similarity=0.178  Sum_probs=46.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHH-----HHhcC-CCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELV-----KEMTH-GTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~-----~~~~~-~~g  268 (332)
                      .++++||+|+ |++|.++++.+.. |. +|+++++++++.+.+.+......+..      ++.+..     .+... -.+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~------D~~~~~~~~~~~~~~~~~~~   75 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEIEGVEPIES------DIVKEVLEEGGVDKLKNLDH   75 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTSTTEEEEEC------CHHHHHHTSSSCGGGTTCSC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhhcCCcceec------ccchHHHHHHHHHHHHhcCC
Confidence            4688999998 9999998887765 87 89999999888876666432222221      111111     11111 126


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|++|+++|.
T Consensus        76 id~lv~~Ag~   85 (245)
T 3e9n_A           76 VDTLVHAAAV   85 (245)
T ss_dssp             CSEEEECC--
T ss_pred             CCEEEECCCc
Confidence            8999999885

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.55  E-value=0.011  Score=51.61  Aligned_cols=74  Identities=19%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee--CCCCCCCchHHHHHHHhcC-CCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI--NPDDEPNKSISELVKEMTH-GTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~--~~~~~~~~~~~~~~~~~~~-~~g~d~  271 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.      -..+  |..+  .+++.+.+.+... -..+|+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~------~~~~~~Dl~d--~~~v~~~~~~~~~~~g~iD~   90 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPEG------FLAVKCDITD--TEQVEQAYKEIEETHGPVEV   90 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT------SEEEECCTTS--HHHHHHHHHHHHHHTCSCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhcc------ceEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            4688999998 9999999999999998 99999988765431      1222  3332  2333333332211 115899


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      +|+++|.
T Consensus        91 lv~nAg~   97 (253)
T 2nm0_A           91 LIANAGV   97 (253)
T ss_dssp             EEEECSC
T ss_pred             EEECCCC
Confidence            9998874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.55  E-value=0.0029  Score=54.28  Aligned_cols=97  Identities=14%  Similarity=0.168  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCC------CeEEEEcCCcchHHHHHHc----C-----CC--eeeCCCCCCCch
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGA------AKIIGIDKNPCRKDKGEAF----G-----MT--DFINPDDEPNKS  255 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~------~~Vi~~~~~~~~~~~~~~l----g-----a~--~v~~~~~~~~~~  255 (332)
                      .++++++||-+|+|. |..+..+++..+.      .+|+.++.+++..+.+++.    +     .+  .++..+.   .+
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~  156 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG---RK  156 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG---GG
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCc---cc
Confidence            578999999999976 8888888887662      3899999999887766542    2     11  2222211   10


Q ss_pred             HHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEc
Q 043260          256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       256 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                            .+.....||+|+...........+.+.|+++ |++++.-
T Consensus       157 ------~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lvi~~  194 (227)
T 1r18_A          157 ------GYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVPV  194 (227)
T ss_dssp             ------CCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             ------CCCcCCCccEEEECCchHHHHHHHHHHhcCC-CEEEEEE
Confidence                  1111236999998877665678999999998 9887653

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.54  E-value=0.0072  Score=52.37  Aligned_cols=80  Identities=20%  Similarity=0.308  Sum_probs=53.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHHhc-CC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKEMT-HG  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~~~-~~  266 (332)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+... .+  |..+  .+++.+.+.+.. ..
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISD--IESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHc
Confidence            4678999998 9999999999999999 999999998776543    3335432 22  3332  233333333321 11


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      .++|++|+++|.
T Consensus        81 ~~id~li~~Ag~   92 (247)
T 3lyl_A           81 LAIDILVNNAGI   92 (247)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            258999999884

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.54  E-value=0.0044  Score=57.53  Aligned_cols=91  Identities=26%  Similarity=0.333  Sum_probs=63.3

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCe-EEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAK-IIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~-Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      -.|++|.|+|.|.+|...++.++.+|. + |++.+++..+.+.+.++|+..+        .++.+.+.      ..|+|+
T Consensus       162 l~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~------~aDvV~  226 (364)
T 2j6i_A          162 IEGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQALPKDAEEKVGARRV--------ENIEELVA------QADIVT  226 (364)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSCCCHHHHHHTTEEEC--------SSHHHHHH------TCSEEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCccchhHHHhcCcEec--------CCHHHHHh------cCCEEE
Confidence            367899999999999999999999999 6 9999988877776777775321        12222221      367888


Q ss_pred             EcCCCh----HHH-HHHHHHhccCCcEEEEEcC
Q 043260          274 ECTGVA----SLI-SEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       274 d~~g~~----~~~-~~~~~~l~~~~G~~v~~G~  301 (332)
                      .++...    ..+ ...+..++++ +.++.++.
T Consensus       227 l~~P~t~~t~~li~~~~l~~mk~g-a~lIn~ar  258 (364)
T 2j6i_A          227 VNAPLHAGTKGLINKELLSKFKKG-AWLVNTAR  258 (364)
T ss_dssp             ECCCCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred             ECCCCChHHHHHhCHHHHhhCCCC-CEEEECCC
Confidence            777642    122 3455667776 66666664

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.54  E-value=0.017  Score=51.50  Aligned_cols=41  Identities=22%  Similarity=0.352  Sum_probs=36.7

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA  239 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~  239 (332)
                      ++|.|+|+|.+|...++.+...|. +|++.++++++.+.+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~   45 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKK   45 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH
Confidence            579999999999999999999999 99999999988776644

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.53  E-value=0.018  Score=52.86  Aligned_cols=93  Identities=10%  Similarity=0.171  Sum_probs=65.4

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      .+|.|+|.|.+|.+.+..++..|. +|++.++++++.+.++++|....        .+..+.+.+-  ..+.|+||-++.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~~~--------~~~~e~~~~a--~~~aDlVilavP   77 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFDVS--------ADLEATLQRA--AAEDALIVLAVP   77 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCCEE--------SCHHHHHHHH--HHTTCEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeee--------CCHHHHHHhc--ccCCCEEEEeCC
Confidence            579999999999999999999998 99999999999999999997432        2233333321  114799999998


Q ss_pred             ChHHHHHHHH---HhccCCcEEEEEcCCC
Q 043260          278 VASLISEALE---ATKLGKGKVMAIGAAN  303 (332)
Q Consensus       278 ~~~~~~~~~~---~l~~~~G~~v~~G~~~  303 (332)
                      .. .+...++   .++++ ..++.+++..
T Consensus        78 ~~-~~~~vl~~l~~~~~~-~iv~Dv~Svk  104 (341)
T 3ktd_A           78 MT-AIDSLLDAVHTHAPN-NGFTDVVSVK  104 (341)
T ss_dssp             HH-HHHHHHHHHHHHCTT-CCEEECCSCS
T ss_pred             HH-HHHHHHHHHHccCCC-CEEEEcCCCC
Confidence            64 3333332   23554 6666776553

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.53  E-value=0.012  Score=55.50  Aligned_cols=98  Identities=12%  Similarity=0.135  Sum_probs=65.1

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCC--CeEEEEcCCcchHHHH-HHcCC-----Cee--eCCCCCCCchHHHHHHHhcCCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGA--AKIIGIDKNPCRKDKG-EAFGM-----TDF--INPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~--~~Vi~~~~~~~~~~~~-~~lga-----~~v--~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      .+|+|+|+|.+|..+++.+...|.  .+|++++++.++.+.+ ++++.     -..  ++..+  .+++.+.+.+.    
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d--~~~l~~~l~~~----   75 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADS--IEELVALINEV----   75 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTC--HHHHHHHHHHH----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCC--HHHHHHHHHhh----
Confidence            379999999999999998888873  4899999999887643 33321     122  23222  23344444332    


Q ss_pred             CccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          268 GVDYGFECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       268 g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ++|+||++++.......+..++..+ -.++.+...
T Consensus        76 ~~DvVin~ag~~~~~~v~~a~l~~g-~~vvD~a~~  109 (405)
T 4ina_A           76 KPQIVLNIALPYQDLTIMEACLRTG-VPYLDTANY  109 (405)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHHT-CCEEESSCC
T ss_pred             CCCEEEECCCcccChHHHHHHHHhC-CCEEEecCC
Confidence            5899999998754555666677776 677765443

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.52  E-value=0.0068  Score=49.77  Aligned_cols=100  Identities=16%  Similarity=0.211  Sum_probs=69.4

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCC-C--eeeCCCCCCCchHHHHHH
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGM-T--DFINPDDEPNKSISELVK  261 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga-~--~v~~~~~~~~~~~~~~~~  261 (332)
                      .....+.++++||-+|+|. |..+..+++.. . +|+++|.+++..+.+++    .+. +  .++.      .+..+.+ 
T Consensus        26 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~------~d~~~~~-   95 (192)
T 1l3i_A           26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME------GDAPEAL-   95 (192)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE------SCHHHHH-
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHHHHHHcCCCcceEEEe------cCHHHhc-
Confidence            3556788999999999977 87777777765 4 99999999988877654    444 2  2222      2222222 


Q ss_pred             HhcCCCCccEEEEcCCC---hHHHHHHHHHhccCCcEEEEEcC
Q 043260          262 EMTHGTGVDYGFECTGV---ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                        .....+|+|+.....   ...+..+.+.|+++ |++++...
T Consensus        96 --~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~g-G~l~~~~~  135 (192)
T 1l3i_A           96 --CKIPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTAI  135 (192)
T ss_dssp             --TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             --ccCCCCCEEEECCchHHHHHHHHHHHHhcCCC-cEEEEEec
Confidence              221379999976542   35678888999998 99887654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.52  E-value=0.0033  Score=51.85  Aligned_cols=101  Identities=16%  Similarity=0.201  Sum_probs=67.0

Q ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC--eeeCCCCCCCchHHHHHHHhc
Q 043260          191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT--DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~--~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      ...++++++||-+|+|. |..+..+++. +. +|+++|.+++.++.+++    .|.+  .++. .+  ..+    +....
T Consensus        17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~~--~~~----l~~~~   86 (185)
T 3mti_A           17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELIL-DG--HEN----LDHYV   86 (185)
T ss_dssp             HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-SC--GGG----GGGTC
T ss_pred             HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-Cc--HHH----HHhhc
Confidence            34678999999999976 7778888876 66 99999999988776644    3433  2332 11  011    21222


Q ss_pred             CCCCccEEEEcCCC-----------h----HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV-----------A----SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       265 ~~~g~d~vid~~g~-----------~----~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                       ...||+|+-+.+.           .    ..+..+.+.|+++ |+++++....
T Consensus        87 -~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~~  138 (185)
T 3mti_A           87 -REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG-GRLAIMIYYG  138 (185)
T ss_dssp             -CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE-EEEEEEEC--
T ss_pred             -cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC-cEEEEEEeCC
Confidence             3369999876321           1    2457888999998 9998876543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.52  E-value=0.0049  Score=54.61  Aligned_cols=101  Identities=10%  Similarity=0.021  Sum_probs=70.3

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHHc-----CCC--eeeCCCCCCCchHHHHHH
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEAF-----GMT--DFINPDDEPNKSISELVK  261 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~l-----ga~--~v~~~~~~~~~~~~~~~~  261 (332)
                      ....++++++||-+|+|. |..+..+++.. ...+|+++|.+++..+.+++.     |.+  .++..+.   .       
T Consensus       104 ~~~~~~~~~~VLD~G~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~---~-------  172 (275)
T 1yb2_A          104 MRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI---A-------  172 (275)
T ss_dssp             --CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT---T-------
T ss_pred             HHcCCCCcCEEEEecCCC-CHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECch---h-------
Confidence            556788999999999974 77778888873 223999999999888876553     533  2222221   1       


Q ss_pred             HhcCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCC
Q 043260          262 EMTHGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +......||+|+...... ..+..+.+.|+++ |++++....
T Consensus       173 ~~~~~~~fD~Vi~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~  213 (275)
T 1yb2_A          173 DFISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLPN  213 (275)
T ss_dssp             TCCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEESS
T ss_pred             ccCcCCCccEEEEcCcCHHHHHHHHHHHcCCC-CEEEEEeCC
Confidence            112233699999876654 4678999999998 999887654

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.51  E-value=0.0058  Score=54.02  Aligned_cols=78  Identities=22%  Similarity=0.270  Sum_probs=53.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCeee--CCCCCCCchHHHHHH---HhcCCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTDFI--NPDDEPNKSISELVK---EMTHGTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~v~--~~~~~~~~~~~~~~~---~~~~~~g  268 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++.....+  |..+  .+++.+.+.   +..+  +
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g--~   82 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ--EDDVKTLVSETIRRFG--R   82 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHS--C
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCeEEEcCCCC--HHHHHHHHHHHHHHcC--C
Confidence            5788999998 9999999999999999 9999999988766443 34322222  3322  233333332   2222  5


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|++|+++|.
T Consensus        83 iD~lv~nAg~   92 (270)
T 1yde_A           83 LDCVVNNAGH   92 (270)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999873

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.51  E-value=0.0063  Score=52.68  Aligned_cols=81  Identities=17%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCC--eee--CCCCCCCchHHHH---HHH
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMT--DFI--NPDDEPNKSISEL---VKE  262 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~--~v~--~~~~~~~~~~~~~---~~~  262 (332)
                      -.|+++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+..  .++  +.+..+.+++.+.   +.+
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            35789999998 9999999999999999 999999998876543    233321  222  2211112333332   223


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      ..+  ++|++|+++|.
T Consensus        91 ~~g--~id~lv~nAg~  104 (247)
T 3i1j_A           91 EFG--RLDGLLHNASI  104 (247)
T ss_dssp             HHS--CCSEEEECCCC
T ss_pred             hCC--CCCEEEECCcc
Confidence            332  59999999884

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.51  E-value=0.011  Score=52.00  Aligned_cols=71  Identities=14%  Similarity=0.229  Sum_probs=48.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC-ee--eCCCCCCCchHHHHHH---HhcCCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT-DF--INPDDEPNKSISELVK---EMTHGTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~-~v--~~~~~~~~~~~~~~~~---~~~~~~g  268 (332)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++       +.. ..  .|..+  .+++.+.+.   +..+  +
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-------~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~g--~   74 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-------EAKYDHIECDVTN--PDQVKASIDHIFKEYG--S   74 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-------SCSSEEEECCTTC--HHHHHHHHHHHHHHHS--C
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-------CCceEEEEecCCC--HHHHHHHHHHHHHHcC--C
Confidence            4688999998 9999999999999999 99999988765       221 22  23332  233333333   2222  5


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|++|+++|.
T Consensus        75 iD~lv~~Ag~   84 (264)
T 2dtx_A           75 ISVLVNNAGI   84 (264)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999883

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.51  E-value=0.0042  Score=53.61  Aligned_cols=105  Identities=16%  Similarity=0.183  Sum_probs=69.3

Q ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhcCC
Q 043260          192 FKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       192 ~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~~~  266 (332)
                      ....++++||-+|+| .|..+..+++..+ ..+|+.++.+++..+.+++    .|...-+....   .+..+.+.++...
T Consensus        68 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---~d~~~~l~~l~~~  143 (232)
T 3cbg_A           68 ISLTGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRL---GPALATLEQLTQG  143 (232)
T ss_dssp             HHHHTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHHHHHHHHTS
T ss_pred             HHhcCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHhc
Confidence            344577899999997 4888888988763 2399999999988876654    35432111111   2233334444321


Q ss_pred             ---CCccEEEEcCCC---hHHHHHHHHHhccCCcEEEEEcC
Q 043260          267 ---TGVDYGFECTGV---ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       267 ---~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                         ..||+||-....   ...+..+.+.|+++ |.+++-..
T Consensus       144 ~~~~~fD~V~~d~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~  183 (232)
T 3cbg_A          144 KPLPEFDLIFIDADKRNYPRYYEIGLNLLRRG-GLMVIDNV  183 (232)
T ss_dssp             SSCCCEEEEEECSCGGGHHHHHHHHHHTEEEE-EEEEEECT
T ss_pred             CCCCCcCEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence               379999965432   24578899999998 99987543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.51  E-value=0.0037  Score=56.73  Aligned_cols=102  Identities=19%  Similarity=0.234  Sum_probs=70.1

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHH----cCCCe--eeCCCCCCCchHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEA----FGMTD--FINPDDEPNKSISELV  260 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~~  260 (332)
                      +.+...++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++    .|...  ++..+.   .+   . 
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~---~~---~-  138 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG---YY---G-  138 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GG---C-
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECCh---hh---c-
Confidence            34566789999999999977 8888888887542 479999999988877654    35432  222111   11   0 


Q ss_pred             HHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEc
Q 043260          261 KEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                        ......||+|+...........+.+.|+++ |++++.-
T Consensus       139 --~~~~~~fD~Iv~~~~~~~~~~~~~~~Lkpg-G~lvi~~  175 (317)
T 1dl5_A          139 --VPEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVPI  175 (317)
T ss_dssp             --CGGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEEB
T ss_pred             --cccCCCeEEEEEcCCHHHHHHHHHHhcCCC-cEEEEEE
Confidence              111236999999776544457888999998 9888764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.50  E-value=0.0086  Score=55.54  Aligned_cols=48  Identities=27%  Similarity=0.350  Sum_probs=41.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCCC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGMT  243 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga~  243 (332)
                      -.|++|+|+|.|.+|..+++.+..+|+ +|+++|++.++++ +++++|++
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            578999999999999999999999999 8999999988876 55666764

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.50  E-value=0.0064  Score=52.52  Aligned_cols=80  Identities=19%  Similarity=0.293  Sum_probs=52.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-----cCCCe-ee--CCCCCCCchHHHHHHHhcC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-----FGMTD-FI--NPDDEPNKSISELVKEMTH-  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-----lga~~-v~--~~~~~~~~~~~~~~~~~~~-  265 (332)
                      +++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+.+     .+... .+  |..+  .+++.+.+.+... 
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLS--EESINKAFEEIYNL   82 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCC--HHHHHHHHHHHHHh
Confidence            4678999998 9999999999999998 99999998876654322     34332 22  3322  2333333332211 


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      -.++|+||+++|.
T Consensus        83 ~~~~d~vi~~Ag~   95 (248)
T 2pnf_A           83 VDGIDILVNNAGI   95 (248)
T ss_dssp             SSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1159999999873

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.49  E-value=0.011  Score=51.78  Aligned_cols=78  Identities=14%  Similarity=0.181  Sum_probs=52.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH---cCCCe-ee--CCCCCCCchHHHHHHHhc---
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA---FGMTD-FI--NPDDEPNKSISELVKEMT---  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~---lga~~-v~--~~~~~~~~~~~~~~~~~~---  264 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++   .|... .+  |..+  .+++.+.+.+..   
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   80 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQ--ESEVRSLFEQVDREQ   80 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCC--HHHHHHHHHHHHHhc
Confidence            4678999998 9999999999999998 999999988776533 22   24321 22  3332  233333333321   


Q ss_pred             CCCCccEEEEcCC
Q 043260          265 HGTGVDYGFECTG  277 (332)
Q Consensus       265 ~~~g~d~vid~~g  277 (332)
                      .+ .+|++|+++|
T Consensus        81 ~g-~id~lvnnAg   92 (260)
T 2qq5_A           81 QG-RLDVLVNNAY   92 (260)
T ss_dssp             TT-CCCEEEECCC
T ss_pred             CC-CceEEEECCc
Confidence            23 6899999994

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.49  E-value=0.0082  Score=55.43  Aligned_cols=88  Identities=20%  Similarity=0.266  Sum_probs=62.1

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .|++|.|+|.|.+|..+++.++.+|. +|++.+++. +.+.+.+.|...+        .++.+.+.      ..|+|+-+
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~~~--------~~l~ell~------~aDiV~l~  222 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFAVA--------ESKDALFE------QSDVLSVH  222 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCEEC--------SSHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCceEe--------CCHHHHHh------hCCEEEEe
Confidence            47899999999999999999999999 999999875 3455666776422        22333332      36888887


Q ss_pred             CCChH----HH-HHHHHHhccCCcEEEEEc
Q 043260          276 TGVAS----LI-SEALEATKLGKGKVMAIG  300 (332)
Q Consensus       276 ~g~~~----~~-~~~~~~l~~~~G~~v~~G  300 (332)
                      +...+    .+ ...++.++++ ..++.++
T Consensus       223 ~Plt~~t~~li~~~~l~~mk~g-ailIN~a  251 (352)
T 3gg9_A          223 LRLNDETRSIITVADLTRMKPT-ALFVNTS  251 (352)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred             ccCcHHHHHhhCHHHHhhCCCC-cEEEECC
Confidence            65321    12 3566777876 7777776

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.49  E-value=0.019  Score=52.28  Aligned_cols=76  Identities=17%  Similarity=0.280  Sum_probs=49.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcc----hHHHHHHc------CCCeeeCCCCCCCchHHHHHHHhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPC----RKDKGEAF------GMTDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~----~~~~~~~l------ga~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      .+++|||+|+ |.+|..+++.+...|. +|++++++..    ..+.++..      ..-.++..+-   .+ .+.+.+..
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl---~d-~~~~~~~~   98 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI---RD-LTTCEQVM   98 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCT---TC-HHHHHHHT
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccC---CC-HHHHHHHh
Confidence            4679999998 9999999999999998 9999998553    22333332      2122322221   11 12344443


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      .  ++|+||++++.
T Consensus        99 ~--~~d~Vih~A~~  110 (351)
T 3ruf_A           99 K--GVDHVLHQAAL  110 (351)
T ss_dssp             T--TCSEEEECCCC
T ss_pred             c--CCCEEEECCcc
Confidence            3  69999999984

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.49  E-value=0.004  Score=54.59  Aligned_cols=81  Identities=16%  Similarity=0.271  Sum_probs=52.8

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcC---CCeEEEEcCCcchHHHHHHc---CCC-eee--CCCCCCCchHHHHHHH--
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQG---AAKIIGIDKNPCRKDKGEAF---GMT-DFI--NPDDEPNKSISELVKE--  262 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G---~~~Vi~~~~~~~~~~~~~~l---ga~-~v~--~~~~~~~~~~~~~~~~--  262 (332)
                      .+++++||+|+ |++|..+++.+...|   . +|++++++.++.+.++++   +.. .++  |..+  .+++.+.+.+  
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~   95 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN--FDAYDKLVADIE   95 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC--GGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCC--hHHHHHHHHHHH
Confidence            45678999998 999999999999899   7 999999987654433332   332 222  3322  3444443333  


Q ss_pred             -hcCCCCccEEEEcCCC
Q 043260          263 -MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 -~~~~~g~d~vid~~g~  278 (332)
                       ..+..++|++|+++|.
T Consensus        96 ~~~g~~~id~li~~Ag~  112 (267)
T 1sny_A           96 GVTKDQGLNVLFNNAGI  112 (267)
T ss_dssp             HHHGGGCCSEEEECCCC
T ss_pred             HhcCCCCccEEEECCCc
Confidence             2221258999999873

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.48  E-value=0.0067  Score=50.55  Aligned_cols=98  Identities=20%  Similarity=0.202  Sum_probs=60.6

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      ++|+|+|+ |.+|..+++.+...|. +|+++++++++.+.....+. .++..+-   .+ .+.+.+...  ++|+||.++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~---~~-~~~~~~~~~--~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPA-HVVVGDV---LQ-AADVDKTVA--GQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCS-EEEESCT---TS-HHHHHHHHT--TCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccccCCce-EEEEecC---CC-HHHHHHHHc--CCCEEEECc
Confidence            68999998 9999999999999998 99999998776432111122 2222221   11 122333332  589999998


Q ss_pred             CChH----------HHHHHHHHhccC-CcEEEEEcCCC
Q 043260          277 GVAS----------LISEALEATKLG-KGKVMAIGAAN  303 (332)
Q Consensus       277 g~~~----------~~~~~~~~l~~~-~G~~v~~G~~~  303 (332)
                      +...          ....+++.+.+. -++++.+++..
T Consensus        76 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~  113 (206)
T 1hdo_A           76 GTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF  113 (206)
T ss_dssp             CCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGG
T ss_pred             cCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeeee
Confidence            8532          123444444432 15888887653

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.48  E-value=0.0084  Score=54.63  Aligned_cols=90  Identities=13%  Similarity=0.216  Sum_probs=62.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK-NPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~-~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      -.|++|.|+|.|.+|...++.++.+|. +|++.++ +.++ +.++++|+..+        .++.+.+.      ..|+|+
T Consensus       144 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~~--------~~l~ell~------~aDvVi  207 (320)
T 1gdh_A          144 LDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQATFH--------DSLDSLLS------VSQFFS  207 (320)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCEEC--------SSHHHHHH------HCSEEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcEEc--------CCHHHHHh------hCCEEE
Confidence            357899999999999999999999998 9999998 7766 35566676321        12222221      368888


Q ss_pred             EcCCChH----HH-HHHHHHhccCCcEEEEEcC
Q 043260          274 ECTGVAS----LI-SEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       274 d~~g~~~----~~-~~~~~~l~~~~G~~v~~G~  301 (332)
                      .++....    .+ ...++.++++ ..++.++.
T Consensus       208 l~~p~~~~t~~~i~~~~l~~mk~g-ailIn~ar  239 (320)
T 1gdh_A          208 LNAPSTPETRYFFNKATIKSLPQG-AIVVNTAR  239 (320)
T ss_dssp             ECCCCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             EeccCchHHHhhcCHHHHhhCCCC-cEEEECCC
Confidence            8776421    22 3456677776 77777765

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.48  E-value=0.011  Score=54.47  Aligned_cols=91  Identities=23%  Similarity=0.341  Sum_probs=61.1

Q ss_pred             CCCCEEEEECCChHHHHHHHHHH-HcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRAR-IQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~-~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      -.|++|.|+|.|.+|...++.++ .+|. +|++.+++.++.+.+.++|...+        .++.+.+.      ..|+|+
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~------~aDvVi  225 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAERV--------DSLEELAR------RSDCVS  225 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHHH------HCSEEE
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcEEe--------CCHHHHhc------cCCEEE
Confidence            45789999999999999999999 9999 99999998877666666665322        11222221      367777


Q ss_pred             EcCCChH----HH-HHHHHHhccCCcEEEEEcC
Q 043260          274 ECTGVAS----LI-SEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       274 d~~g~~~----~~-~~~~~~l~~~~G~~v~~G~  301 (332)
                      .++....    .+ ...++.++++ ..++.++.
T Consensus       226 l~vp~~~~t~~li~~~~l~~mk~g-ailin~sr  257 (348)
T 2w2k_A          226 VSVPYMKLTHHLIDEAFFAAMKPG-SRIVNTAR  257 (348)
T ss_dssp             ECCCCSGGGTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred             EeCCCChHHHHHhhHHHHhcCCCC-CEEEECCC
Confidence            7765421    12 2455666665 55555543

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.48  E-value=0.024  Score=49.17  Aligned_cols=78  Identities=18%  Similarity=0.220  Sum_probs=50.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHH----HHHcCCCee-e--CCCCCCCchHHHHHH---Hh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK-NPCRKDK----GEAFGMTDF-I--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~-~~~~~~~----~~~lga~~v-~--~~~~~~~~~~~~~~~---~~  263 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++ +.++.+.    +++.|.+.. +  |..+  .++..+.+.   +.
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~   79 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVAD--ADEVKAMIKEVVSQ   79 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            4678999998 9999999999999999 8888776 4344432    233454422 2  3322  233333332   22


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus        80 ~g--~id~lv~nAg~   92 (246)
T 3osu_A           80 FG--SLDVLVNNAGI   92 (246)
T ss_dssp             HS--CCCEEEECCCC
T ss_pred             cC--CCCEEEECCCC
Confidence            22  58999999884

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.48  E-value=0.011  Score=53.12  Aligned_cols=79  Identities=20%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC------------cchHH----HHHHcCCCee---eCCCCCCCc
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN------------PCRKD----KGEAFGMTDF---INPDDEPNK  254 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~------------~~~~~----~~~~lga~~v---~~~~~~~~~  254 (332)
                      -.|+++||+|+ +++|.++++.+...|+ +|++++++            .++++    .+++.|....   .|..+  .+
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~  102 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRD--FD  102 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC--HH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCC--HH
Confidence            35789999998 9999999999999999 99999876            33333    2234454322   23332  23


Q ss_pred             hHHHHHH---HhcCCCCccEEEEcCCC
Q 043260          255 SISELVK---EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       255 ~~~~~~~---~~~~~~g~d~vid~~g~  278 (332)
                      ++.+.+.   +..+  +.|++|+++|.
T Consensus       103 ~v~~~~~~~~~~~g--~iD~lv~nAg~  127 (299)
T 3t7c_A          103 AMQAAVDDGVTQLG--RLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHHHHS--CCCEEEECCCC
T ss_pred             HHHHHHHHHHHHhC--CCCEEEECCCC
Confidence            3333333   2222  58999999873

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.012  Score=56.56  Aligned_cols=94  Identities=13%  Similarity=0.112  Sum_probs=59.6

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHH-cCCCe-eeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEA-FGMTD-FINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~-lga~~-v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      ++.+|+|+|+|.+|..++..+... |. +|++++++.++.+.+.+ .+... .++..+  .+++.+.+    .  ++|+|
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~~~~~D~~d--~~~l~~~l----~--~~DvV   92 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSKAISLDVTD--DSALDKVL----A--DNDVV   92 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCEEEECCTTC--HHHHHHHH----H--TSSEE
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCcEEEEecCC--HHHHHHHH----c--CCCEE
Confidence            356899999999999999888877 66 89999999888765543 34322 223322  12222222    1  58999


Q ss_pred             EEcCCChHHHHHHHHHhccCCcEEEEE
Q 043260          273 FECTGVASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       273 id~~g~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      |++++..........++..+ -.++..
T Consensus        93 In~tp~~~~~~v~~a~l~~g-~~vvd~  118 (467)
T 2axq_A           93 ISLIPYTFHPNVVKSAIRTK-TDVVTS  118 (467)
T ss_dssp             EECSCGGGHHHHHHHHHHHT-CEEEEC
T ss_pred             EECCchhhhHHHHHHHHhcC-CEEEEe
Confidence            99999753323344556665 555554

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.47  E-value=0.016  Score=52.29  Aligned_cols=100  Identities=17%  Similarity=0.132  Sum_probs=62.8

Q ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-----CCC-eee---CCCCCCCchHHHHHHHh
Q 043260          194 VEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-----GMT-DFI---NPDDEPNKSISELVKEM  263 (332)
Q Consensus       194 ~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-----ga~-~v~---~~~~~~~~~~~~~~~~~  263 (332)
                      ..++++|||+|+ |.+|..++..+...|. +|++++++.++.+.+.+.     +.. .++   |..+  .+.    +.+.
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~----~~~~   80 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK--QGA----YDEV   80 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS--TTT----TTTT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC--hHH----HHHH
Confidence            346789999998 9999999999888998 999999987765543321     221 222   2222  121    2222


Q ss_pred             cCCCCccEEEEcCCCh--------------HHHHHHHHHhcc-C-CcEEEEEcCC
Q 043260          264 THGTGVDYGFECTGVA--------------SLISEALEATKL-G-KGKVMAIGAA  302 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~--------------~~~~~~~~~l~~-~-~G~~v~~G~~  302 (332)
                      ..  ++|+||++++..              .....+++.+.+ . .++++.+++.
T Consensus        81 ~~--~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~  133 (342)
T 1y1p_A           81 IK--GAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSST  133 (342)
T ss_dssp             TT--TCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCG
T ss_pred             Hc--CCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccH
Confidence            22  689999998742              112244444442 2 2689988764

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.47  E-value=0.021  Score=50.19  Aligned_cols=80  Identities=19%  Similarity=0.122  Sum_probs=51.1

Q ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHH---
Q 043260          194 VEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGI-DKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVK---  261 (332)
Q Consensus       194 ~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~-~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~---  261 (332)
                      ...++++||+|+ |++|.++++.+...|+ +|+++ .++.++.+.+    ++.+... ++  |..+  .+++.+.+.   
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~   99 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGN--AADIAAMFSAVD   99 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHH
Confidence            356788999998 9999999999999999 78776 6666655433    3334332 22  3322  233333332   


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +..+  ++|++|+++|.
T Consensus       100 ~~~g--~id~li~nAg~  114 (272)
T 4e3z_A          100 RQFG--RLDGLVNNAGI  114 (272)
T ss_dssp             HHHS--CCCEEEECCCC
T ss_pred             HhCC--CCCEEEECCCC
Confidence            2222  58999999873

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.46  E-value=0.0071  Score=53.90  Aligned_cols=78  Identities=21%  Similarity=0.313  Sum_probs=52.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch-------H----HHHHHcCCCee-e--CCCCCCCchHHHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR-------K----DKGEAFGMTDF-I--NPDDEPNKSISELV  260 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~-------~----~~~~~lga~~v-~--~~~~~~~~~~~~~~  260 (332)
                      .++++||+|+ +++|.++++.+...|+ +|++++++.++       +    +.+++.+.... +  |..+  .++..+.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~   84 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRD--GDAVAAAV   84 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTS--HHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHH
Confidence            5788999998 9999999999999999 99999998763       2    22334454322 2  3332  23333333


Q ss_pred             H---HhcCCCCccEEEEcCCC
Q 043260          261 K---EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       261 ~---~~~~~~g~d~vid~~g~  278 (332)
                      .   +..+  +.|++|+++|.
T Consensus        85 ~~~~~~~g--~id~lvnnAg~  103 (285)
T 3sc4_A           85 AKTVEQFG--GIDICVNNASA  103 (285)
T ss_dssp             HHHHHHHS--CCSEEEECCCC
T ss_pred             HHHHHHcC--CCCEEEECCCC
Confidence            2   3332  59999999884

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.46  E-value=0.0035  Score=54.62  Aligned_cols=93  Identities=19%  Similarity=0.273  Sum_probs=58.4

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCC--CCccEEEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHG--TGVDYGFE  274 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~--~g~d~vid  274 (332)
                      +++||+|+ |++|..+++.+...|+ +|+++++++++.+.      +...|.      .-.+.+.+....  .++|++|+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~------~~~~Dl------~~~~~v~~~~~~~~~~id~lv~   68 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA------DLSTAE------GRKQAIADVLAKCSKGMDGLVL   68 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------CTTSHH------HHHHHHHHHHTTCTTCCSEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc------ccccCC------CCHHHHHHHHHHhCCCCCEEEE
Confidence            46899998 9999999999999999 89999988765321      100011      111223332221  26899999


Q ss_pred             cCCChH------------------HHHHHHHHhccC-CcEEEEEcCCC
Q 043260          275 CTGVAS------------------LISEALEATKLG-KGKVMAIGAAN  303 (332)
Q Consensus       275 ~~g~~~------------------~~~~~~~~l~~~-~G~~v~~G~~~  303 (332)
                      ++|...                  ..+.++..+.+. .|+++.+++..
T Consensus        69 ~Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  116 (257)
T 1fjh_A           69 CAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA  116 (257)
T ss_dssp             CCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             CCCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence            988532                  133444444332 28999998754

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.46  E-value=0.007  Score=53.16  Aligned_cols=78  Identities=14%  Similarity=0.128  Sum_probs=52.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCC-eee--CCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMT-DFI--NPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~-~v~--~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ +++... ..+  |..+  .+++.+.+.   +..+  
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g--   80 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ--PAQWKAAVDTAVTAFG--   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC--HHHHHHHHHHHHHHHS--
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcCceEEEecCCC--HHHHHHHHHHHHHHcC--
Confidence            4788999998 9999999999999999 999999988776543 334321 122  3332  233333333   2222  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus        81 ~iD~lv~~Ag~   91 (260)
T 1nff_A           81 GLHVLVNNAGI   91 (260)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            59999999883

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.46  E-value=0.0051  Score=53.06  Aligned_cols=80  Identities=19%  Similarity=0.305  Sum_probs=53.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHHc-CCC-eee--CCCCCCCchHHHHHHH---hcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQG--AAKIIGIDKNPCRKDKGEAF-GMT-DFI--NPDDEPNKSISELVKE---MTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G--~~~Vi~~~~~~~~~~~~~~l-ga~-~v~--~~~~~~~~~~~~~~~~---~~~  265 (332)
                      .++++||+|+ |++|..+++.+...|  . +|++++++.++.+.++++ +.. .++  |..+  .+++.+.+.+   ..+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g   78 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTVTC--DKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCTTC--HHHHHHHHHHHHHHHG
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeecCC--HHHHHHHHHHHHHhcC
Confidence            3578999998 999999999998899  7 999999998887766665 322 222  3222  2333333332   222


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      ..++|++|+++|.
T Consensus        79 ~~~id~li~~Ag~   91 (250)
T 1yo6_A           79 SDGLSLLINNAGV   91 (250)
T ss_dssp             GGCCCEEEECCCC
T ss_pred             CCCCcEEEECCcc
Confidence            1258999998873

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.46  E-value=0.0079  Score=52.21  Aligned_cols=100  Identities=19%  Similarity=0.240  Sum_probs=69.7

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC---eeeCCCCCCCchHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT---DFINPDDEPNKSISELV  260 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~~  260 (332)
                      +.....+.++++||-+|+|. |..+..+++..|. +|+++|.+++.++.+++    .|..   .++..+.   .+     
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~---~~-----   97 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---AG-----   97 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---TT-----
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh---Hh-----
Confidence            33556788999999999977 8888888888887 99999999988776644    3432   2222211   11     


Q ss_pred             HHhcCCCCccEEEEcCC------ChHHHHHHHHHhccCCcEEEEEc
Q 043260          261 KEMTHGTGVDYGFECTG------VASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                        +.....||+|+....      -...+..+.+.|+|+ |++++..
T Consensus        98 --~~~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~~~~  140 (256)
T 1nkv_A           98 --YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE  140 (256)
T ss_dssp             --CCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             --CCcCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC-eEEEEec
Confidence              111337999996322      234678899999998 9988764

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.46  E-value=0.013  Score=53.21  Aligned_cols=75  Identities=16%  Similarity=0.233  Sum_probs=50.2

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC---cchHHH-HHHc----CCC-eeeCCCCCCCchH-HHHHHHhcC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN---PCRKDK-GEAF----GMT-DFINPDDEPNKSI-SELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~---~~~~~~-~~~l----ga~-~v~~~~~~~~~~~-~~~~~~~~~  265 (332)
                      .++++||+|+|++|.+++..+...|+++|+++.|+   .+|.+. ++++    +.. .++...+   .+. .+.+.    
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~---l~~~~~~l~----  219 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLAD---QHAFTEALA----  219 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTC---HHHHHHHHH----
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHh---hhhhHhhcc----
Confidence            57899999999999999999999999899999999   444432 2333    221 2233322   111 12221    


Q ss_pred             CCCccEEEEcCCCh
Q 043260          266 GTGVDYGFECTGVA  279 (332)
Q Consensus       266 ~~g~d~vid~~g~~  279 (332)
                        .+|+||++++..
T Consensus       220 --~~DiIINaTp~G  231 (312)
T 3t4e_A          220 --SADILTNGTKVG  231 (312)
T ss_dssp             --HCSEEEECSSTT
T ss_pred             --CceEEEECCcCC
Confidence              489999998753

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.45  E-value=0.01  Score=51.72  Aligned_cols=77  Identities=21%  Similarity=0.279  Sum_probs=52.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHH---hc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKE---MT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~---~~  264 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+    ++.+... .+  |..+  .+++.+.+.+   ..
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTN--TESVQNAVRSVHEQE   88 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHc
Confidence            5788999998 9999999999999998 999999988765432    2334332 22  3322  2333333332   22


Q ss_pred             CCCCccEEEEcCC
Q 043260          265 HGTGVDYGFECTG  277 (332)
Q Consensus       265 ~~~g~d~vid~~g  277 (332)
                      +  ++|++|+++|
T Consensus        89 ~--~id~vi~~Ag   99 (260)
T 3awd_A           89 G--RVDILVACAG   99 (260)
T ss_dssp             S--CCCEEEECCC
T ss_pred             C--CCCEEEECCC
Confidence            2  5899999987

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.45  E-value=0.023  Score=50.34  Aligned_cols=92  Identities=22%  Similarity=0.272  Sum_probs=63.3

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHcCCCe-eeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAFGMTD-FINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .+|.|+|+|.+|.+.++.++..|. .+|+++++++++.+.+++.|... ....       ..    +.... .+|+||.+
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~-------~~----~~~~~-~aDvVila   69 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTS-------IA----KVEDF-SPDFVMLS   69 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESC-------GG----GGGGT-CCSEEEEC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCC-------HH----HHhcC-CCCEEEEc
Confidence            368999999999999999988885 27999999999988888888642 2211       11    11111 58999999


Q ss_pred             CCChHH---HHHHHHHhccCCcEEEEEcCC
Q 043260          276 TGVASL---ISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       276 ~g~~~~---~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +.....   +......++++ ..++.++..
T Consensus        70 vp~~~~~~v~~~l~~~l~~~-~iv~~~~~~   98 (281)
T 2g5c_A           70 SPVRTFREIAKKLSYILSED-ATVTDQGSV   98 (281)
T ss_dssp             SCHHHHHHHHHHHHHHSCTT-CEEEECCSC
T ss_pred             CCHHHHHHHHHHHHhhCCCC-cEEEECCCC
Confidence            987532   23334456665 666666654

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.44  E-value=0.0049  Score=54.60  Aligned_cols=78  Identities=19%  Similarity=0.196  Sum_probs=53.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCe-ee--CCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTD-FI--NPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~-v~--~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+ .+++... .+  |..+  .+++.+.+.   +..+  
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g--   78 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTD--GERIDVVAADVLARYG--   78 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS--
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCceEEEeeCCC--HHHHHHHHHHHHHhCC--
Confidence            4678999998 9999999999999999 999999998876644 4454332 22  3332  233333332   2222  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus        79 ~id~lv~~Ag~   89 (281)
T 3m1a_A           79 RVDVLVNNAGR   89 (281)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            58999999884

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.44  E-value=0.0098  Score=52.75  Aligned_cols=78  Identities=19%  Similarity=0.314  Sum_probs=53.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCC---C-ee--eCCCCCCCchHHHHHH---
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGM---T-DF--INPDDEPNKSISELVK---  261 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga---~-~v--~~~~~~~~~~~~~~~~---  261 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.+.   . ..  .|..+  .++..+.+.   
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   86 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN--EDETARAVDAVT   86 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC--HHHHHHHHHHHH
Confidence            5789999998 9999999999999999 999999998776533    33343   1 11  23332  233333333   


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +..+  ++|++|+++|.
T Consensus        87 ~~~g--~id~lv~nAg~  101 (281)
T 3svt_A           87 AWHG--RLHGVVHCAGG  101 (281)
T ss_dssp             HHHS--CCCEEEECCCC
T ss_pred             HHcC--CCCEEEECCCc
Confidence            2222  58999999985

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.43  E-value=0.025  Score=52.25  Aligned_cols=92  Identities=20%  Similarity=0.256  Sum_probs=64.3

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      ..+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+...        .+..+.+...   ..+|+||-++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~--------~s~~e~~~~a---~~~DvVi~~v   89 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIAGA--------RSIEEFCAKL---VKPRVVWLMV   89 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCBCC--------SSHHHHHHHS---CSSCEEEECS
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCEEe--------CCHHHHHhcC---CCCCEEEEeC
Confidence            4689999999999999999999998 99999999999888877765321        3344444332   2469999998


Q ss_pred             CChHHHHHHHH----HhccCCcEEEEEcCC
Q 043260          277 GVASLISEALE----ATKLGKGKVMAIGAA  302 (332)
Q Consensus       277 g~~~~~~~~~~----~l~~~~G~~v~~G~~  302 (332)
                      ... .+...++    .+.++ ..++..+..
T Consensus        90 p~~-~v~~vl~~l~~~l~~g-~iiId~st~  117 (358)
T 4e21_A           90 PAA-VVDSMLQRMTPLLAAN-DIVIDGGNS  117 (358)
T ss_dssp             CGG-GHHHHHHHHGGGCCTT-CEEEECSSC
T ss_pred             CHH-HHHHHHHHHHhhCCCC-CEEEeCCCC
Confidence            875 4444433    34444 555555543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.43  E-value=0.0086  Score=54.92  Aligned_cols=89  Identities=24%  Similarity=0.378  Sum_probs=63.9

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      -.|++|.|+|.|.+|...++.++.+|. +|++.+++..+ +.++++|++..    +     +.    ++.  ...|+|+.
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~~----~-----l~----ell--~~aDvV~l  225 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQQL----P-----LE----EIW--PLCDFITV  225 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCEEC----C-----HH----HHG--GGCSEEEE
T ss_pred             CCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCceeC----C-----HH----HHH--hcCCEEEE
Confidence            357899999999999999999999999 99999988766 35667776421    1     21    221  14788888


Q ss_pred             cCCChH----HH-HHHHHHhccCCcEEEEEcC
Q 043260          275 CTGVAS----LI-SEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       275 ~~g~~~----~~-~~~~~~l~~~~G~~v~~G~  301 (332)
                      ++....    .+ ...++.++++ +.++.++.
T Consensus       226 ~~P~t~~t~~li~~~~l~~mk~g-ailIN~ar  256 (335)
T 2g76_A          226 HTPLLPSTTGLLNDNTFAQCKKG-VRVVNCAR  256 (335)
T ss_dssp             CCCCCTTTTTSBCHHHHTTSCTT-EEEEECSC
T ss_pred             ecCCCHHHHHhhCHHHHhhCCCC-cEEEECCC
Confidence            776532    22 3567778886 77777775

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.43  E-value=0.0068  Score=53.53  Aligned_cols=78  Identities=18%  Similarity=0.173  Sum_probs=53.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHH---hc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKE---MT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~---~~  264 (332)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.|... ++  |..+  .+++.+.+.+   ..
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~  106 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN--REDIYSSAKKVKAEI  106 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCC--HHHHHHHHHHHHHHC
Confidence            5688999998 9999999999999998 899999988766533    2334432 22  3322  2333333332   22


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                       + ++|++|+++|.
T Consensus       107 -g-~iD~li~~Ag~  118 (272)
T 1yb1_A          107 -G-DVSILVNNAGV  118 (272)
T ss_dssp             -C-CCSEEEECCCC
T ss_pred             -C-CCcEEEECCCc
Confidence             2 58999999874

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.43  E-value=0.0026  Score=55.48  Aligned_cols=74  Identities=19%  Similarity=0.211  Sum_probs=49.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHH---HhcCCCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVK---EMTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~---~~~~~~g~d~  271 (332)
                      .++++||+|+ |++|.++++.+...|+ +|++++++.++.+.+.  +  ...|..+  .+++.+.+.   +..+  ++|+
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~--~--~~~D~~~--~~~~~~~~~~~~~~~g--~id~   84 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF--G--VEVDVTD--SDAVDRAFTAVEEHQG--PVEV   84 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE--E--EECCTTC--HHHHHHHHHHHHHHHS--SCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHhc--C--eeccCCC--HHHHHHHHHHHHHHcC--CCCE
Confidence            4688999998 9999999999999998 9999998876543221  1  2233333  233333332   2222  5899


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      +|++.|.
T Consensus        85 lv~~Ag~   91 (247)
T 1uzm_A           85 LVSNAGL   91 (247)
T ss_dssp             EEEECSC
T ss_pred             EEECCCC
Confidence            9999884

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.43  E-value=0.0065  Score=54.31  Aligned_cols=78  Identities=17%  Similarity=0.172  Sum_probs=52.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc----CCCe-ee--CCCCCCCchHHHHHHHhc--
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF----GMTD-FI--NPDDEPNKSISELVKEMT--  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l----ga~~-v~--~~~~~~~~~~~~~~~~~~--  264 (332)
                      .++++||+|+ |++|..++..+...|+ +|++++++.++.+.+ +++    +... ++  |..+  .+++.+.+.+..  
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD--PDMVQNTVSELIKV  101 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC--HHHHHHHHHHHHHH
Confidence            5688999998 9999999999999999 999999988776533 222    4332 22  3322  233333333221  


Q ss_pred             CCCCccEEEEcCC
Q 043260          265 HGTGVDYGFECTG  277 (332)
Q Consensus       265 ~~~g~d~vid~~g  277 (332)
                      .+ .+|++|+++|
T Consensus       102 ~g-~id~li~~Ag  113 (302)
T 1w6u_A          102 AG-HPNIVINNAA  113 (302)
T ss_dssp             TC-SCSEEEECCC
T ss_pred             cC-CCCEEEECCC
Confidence            12 5899999988

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.42  E-value=0.014  Score=51.87  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=50.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH-HH---c-CCCe-ee--CCCCCCCchHHHHHH---H
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK-NPCRKDKG-EA---F-GMTD-FI--NPDDEPNKSISELVK---E  262 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~-~~~~~~~~-~~---l-ga~~-v~--~~~~~~~~~~~~~~~---~  262 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++ +.++.+.+ ++   . +... .+  |..+  .+++.+.+.   +
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~  100 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTK--PSEIADMMAMVAD  100 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCC--HHHHHHHHHHHHH
Confidence            4688999998 9999999999999999 9999998 44444332 22   2 3222 22  2222  233333333   2


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      ..+  ++|++|+++|.
T Consensus       101 ~~g--~iD~lv~nAg~  114 (281)
T 3v2h_A          101 RFG--GADILVNNAGV  114 (281)
T ss_dssp             HTS--SCSEEEECCCC
T ss_pred             HCC--CCCEEEECCCC
Confidence            222  58999999884

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.42  E-value=0.0065  Score=51.84  Aligned_cols=98  Identities=18%  Similarity=0.218  Sum_probs=67.9

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHH----cC-----CC--eeeCCCCCCCchHHHHH
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEA----FG-----MT--DFINPDDEPNKSISELV  260 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~----lg-----a~--~v~~~~~~~~~~~~~~~  260 (332)
                      .++++++||-+|+|. |..+..+++..|. .+|+.+|.+++..+.+++    .|     .+  .++..+.   ..     
T Consensus        74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~-----  144 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG---RM-----  144 (226)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG---GG-----
T ss_pred             hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc---cc-----
Confidence            378999999999976 8888888888763 389999999988876643    22     11  2222211   10     


Q ss_pred             HHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcC
Q 043260          261 KEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                       .......||+|+........+..+.+.|+++ |++++.-.
T Consensus       145 -~~~~~~~fD~i~~~~~~~~~~~~~~~~Lkpg-G~lv~~~~  183 (226)
T 1i1n_A          145 -GYAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILPVG  183 (226)
T ss_dssp             -CCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred             -CcccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEEe
Confidence             0111236999998777656678999999998 98887543

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.40  E-value=0.013  Score=51.59  Aligned_cols=78  Identities=8%  Similarity=0.092  Sum_probs=51.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC-CcchHHHH-HHc----CCCe-ee--CCCCCCC----chHHHHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK-NPCRKDKG-EAF----GMTD-FI--NPDDEPN----KSISELVK  261 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~-~~~~~~~~-~~l----ga~~-v~--~~~~~~~----~~~~~~~~  261 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++ ++++.+.+ +++    |... .+  |..+  .    +++.+.+.
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   86 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL--SSSLLDCCEDIID   86 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS--STTHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCC--ccccHHHHHHHHH
Confidence            4678999998 9999999999999999 9999998 77665533 222    4332 22  3333  2    23333222


Q ss_pred             ---HhcCCCCccEEEEcCCC
Q 043260          262 ---EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ---~~~~~~g~d~vid~~g~  278 (332)
                         +..+  ++|++|+++|.
T Consensus        87 ~~~~~~g--~id~lv~nAg~  104 (276)
T 1mxh_A           87 CSFRAFG--RCDVLVNNASA  104 (276)
T ss_dssp             HHHHHHS--CCCEEEECCCC
T ss_pred             HHHHhcC--CCCEEEECCCC
Confidence               2222  58999999883

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.40  E-value=0.013  Score=56.01  Aligned_cols=103  Identities=13%  Similarity=0.172  Sum_probs=74.4

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHc-CC--CeEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHHHHHHhcCCCC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQ-GA--AKIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~-G~--~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      .+....+|||+|+|++|..++.++... +.  ..|++++..+.+.+..+.+|.... ...++   ++..+.+..+..+ +
T Consensus         9 ~~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vda---dnv~~~l~aLl~~-~   84 (480)
T 2ph5_A            9 KILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITP---QNYLEVIGSTLEE-N   84 (480)
T ss_dssp             CBCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCT---TTHHHHTGGGCCT-T
T ss_pred             eecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccc---hhHHHHHHHHhcC-C
Confidence            455667899999999999998877664 44  379999988777676777775332 23323   6666666666654 4


Q ss_pred             ccEEEEcCCChHHHHHHHHHhccCCcEEEEEcC
Q 043260          269 VDYGFECTGVASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       269 ~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                       |+||+++-....+..+-.|+..+ -.++....
T Consensus        85 -DvVIN~s~~~~~l~Im~acleaG-v~YlDTa~  115 (480)
T 2ph5_A           85 -DFLIDVSIGISSLALIILCNQKG-ALYINAAT  115 (480)
T ss_dssp             -CEEEECCSSSCHHHHHHHHHHHT-CEEEESSC
T ss_pred             -CEEEECCccccCHHHHHHHHHcC-CCEEECCC
Confidence             99999776656677777788887 88888875

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.40  E-value=0.0062  Score=53.38  Aligned_cols=79  Identities=19%  Similarity=0.181  Sum_probs=52.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHH---hc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKE---MT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~---~~  264 (332)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+... .+  |..+  .+++.+.+.+   ..
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL--RPEREKLMQTVSSMF   89 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            5678999998 9999999999999998 999999988766532    2234332 22  2222  2233333322   22


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      ++ ++|++|+++|.
T Consensus        90 ~~-~id~li~~Ag~  102 (266)
T 1xq1_A           90 GG-KLDILINNLGA  102 (266)
T ss_dssp             TT-CCSEEEEECCC
T ss_pred             CC-CCcEEEECCCC
Confidence            12 68999999884

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.40  E-value=0.012  Score=51.16  Aligned_cols=78  Identities=19%  Similarity=0.259  Sum_probs=52.5

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCe-ee--CCCCCCCchHHHHHHHhcCC-CCccE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTD-FI--NPDDEPNKSISELVKEMTHG-TGVDY  271 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~-v~--~~~~~~~~~~~~~~~~~~~~-~g~d~  271 (332)
                      +++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++++... .+  |..+  .+++.+.+.+.... .++|+
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iD~   77 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN--RAAIEEMLASLPAEWCNIDI   77 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHTSCTTTCCCCE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC--HHHHHHHHHHHHHhCCCCCE
Confidence            36888998 9999999999999998 999999998776644 4454332 22  3332  23344444433221 15899


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      +|+++|.
T Consensus        78 lvnnAg~   84 (248)
T 3asu_A           78 LVNNAGL   84 (248)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999873

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.39  E-value=0.025  Score=56.06  Aligned_cols=105  Identities=16%  Similarity=0.099  Sum_probs=66.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc---------chHHH----HHHcCCCeeeCCCCC-CCchHHHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP---------CRKDK----GEAFGMTDFINPDDE-PNKSISELV  260 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~---------~~~~~----~~~lga~~v~~~~~~-~~~~~~~~~  260 (332)
                      .|+++||+|+ +++|.+.++.+...|+ +|++++++.         ++.+.    +++.|...+.+..+. ....+.+.+
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~   85 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGA-KVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETA   85 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence            4678899998 9999999999999999 999988754         33332    233454444444441 112333444


Q ss_pred             HHhcCCCCccEEEEcCCCh-------------------------HHHHHHHHHhcc-CCcEEEEEcCCC
Q 043260          261 KEMTHGTGVDYGFECTGVA-------------------------SLISEALEATKL-GKGKVMAIGAAN  303 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~G~~~  303 (332)
                      .+..+  ..|++|++.|..                         ...+.++..+++ +.|++|.+++..
T Consensus        86 ~~~~G--~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~a  152 (604)
T 2et6_A           86 VKNFG--TVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPA  152 (604)
T ss_dssp             HHHHS--CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHH
T ss_pred             HHHcC--CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHH
Confidence            44433  599999999841                         123445555533 228999998754

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.38  E-value=0.0078  Score=52.61  Aligned_cols=78  Identities=17%  Similarity=0.247  Sum_probs=49.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe-ee--CCCCCCCchHHHHHHHhcCCCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD-FI--NPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~-v~--~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      .++++||+|+ +++|.++++.+...|+ +|++++++.++  ..++++... .+  |..+  .++..+.+.....-.+.|+
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~g~id~   82 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGED--VVADLGDRARFAAADVTD--EAAVASALDLAETMGTLRI   82 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCHH--HHHHTCTTEEEEECCTTC--HHHHHHHHHHHHHHSCEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchHH--HHHhcCCceEEEECCCCC--HHHHHHHHHHHHHhCCCCE
Confidence            4688999998 9999999999999999 99999885443  345555432 22  3332  2333332222111126999


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      +|+++|.
T Consensus        83 lv~nAg~   89 (257)
T 3tl3_A           83 VVNCAGT   89 (257)
T ss_dssp             EEECGGG
T ss_pred             EEECCCC
Confidence            9999984

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.37  E-value=0.0064  Score=52.03  Aligned_cols=101  Identities=19%  Similarity=0.185  Sum_probs=69.8

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC---C-eeeCCCCCCCchHHHHHHHhc
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM---T-DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga---~-~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      .+...+.++++||-+|+|. |..+..+++.. . +|++++.+++..+.+++...   . .++..+.   .+      ...
T Consensus        63 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~---~~------~~~  130 (231)
T 1vbf_A           63 LDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILGDG---TL------GYE  130 (231)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG---GG------CCG
T ss_pred             HHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCc---cc------ccc
Confidence            3556788999999999986 88888888764 4 99999999998887766421   1 2222211   11      011


Q ss_pred             CCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          265 HGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       265 ~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ....||+|+....-......+.+.|+++ |++++.-..
T Consensus       131 ~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~l~~~~~~  167 (231)
T 1vbf_A          131 EEKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILPIGV  167 (231)
T ss_dssp             GGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEECS
T ss_pred             cCCCccEEEECCcHHHHHHHHHHHcCCC-cEEEEEEcC
Confidence            1236999998766544557889999998 988876443

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.37  E-value=0.0072  Score=56.63  Aligned_cols=90  Identities=17%  Similarity=0.180  Sum_probs=61.7

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .|+++.|+|.|.+|..+++.++.+|. +|++.+++..+.+.++++|+..+        .++.    ++.  ...|+|+.+
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~~~--------~~l~----ell--~~aDvV~l~  254 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH--------ATRE----DMY--PVCDVVTLN  254 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC--------SSHH----HHG--GGCSEEEEC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCceec--------CCHH----HHH--hcCCEEEEe
Confidence            67899999999999999999999999 99999988766666667775422        1121    121  146777777


Q ss_pred             CCCh----HHH-HHHHHHhccCCcEEEEEcC
Q 043260          276 TGVA----SLI-SEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       276 ~g~~----~~~-~~~~~~l~~~~G~~v~~G~  301 (332)
                      +...    ..+ ...++.++++ ..++.++.
T Consensus       255 ~Plt~~t~~li~~~~l~~mk~g-ailIN~aR  284 (393)
T 2nac_A          255 CPLHPETEHMINDETLKLFKRG-AYIVNTAR  284 (393)
T ss_dssp             SCCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             cCCchHHHHHhhHHHHhhCCCC-CEEEECCC
Confidence            6532    122 3455666765 66666663

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.36  E-value=0.0065  Score=51.75  Aligned_cols=106  Identities=15%  Similarity=0.139  Sum_probs=69.4

Q ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhcCC
Q 043260          192 FKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       192 ~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~~~  266 (332)
                      ....++++||-+|+|. |..+..+++..+ ..+|+.+|.+++..+.+++    .|...-+....   .+..+.+..+...
T Consensus        60 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~  135 (225)
T 3tr6_A           60 VKLMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL---SPAKDTLAELIHA  135 (225)
T ss_dssp             HHHHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHHTT
T ss_pred             HHhhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe---CCHHHHHHHhhhc
Confidence            3456788999999976 788888888764 3499999999988776654    35432111111   2233333333321


Q ss_pred             ---CCccEEEEcCCC---hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          267 ---TGVDYGFECTGV---ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       267 ---~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                         ..||+|+-....   ...+..+.+.|+++ |.+++-...
T Consensus       136 ~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~~~  176 (225)
T 3tr6_A          136 GQAWQYDLIYIDADKANTDLYYEESLKLLREG-GLIAVDNVL  176 (225)
T ss_dssp             TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEECSS
T ss_pred             cCCCCccEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEeCCC
Confidence               379999965543   24578889999998 999875543

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.35  E-value=0.0063  Score=53.30  Aligned_cols=78  Identities=18%  Similarity=0.239  Sum_probs=52.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-e--eCCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-F--INPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~~~---~~~  264 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.+... .  .|..+  .+++.+.+.   +..
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK--AEDRERLVAMAVNLH   89 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            5788999998 9999999999999999 999999988766432    2234332 1  23322  233333222   222


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  ++|++|+++|.
T Consensus        90 g--~iD~lv~~Ag~  101 (260)
T 2zat_A           90 G--GVDILVSNAAV  101 (260)
T ss_dssp             S--CCCEEEECCCC
T ss_pred             C--CCCEEEECCCC
Confidence            2  59999999873

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.35  E-value=0.013  Score=51.29  Aligned_cols=77  Identities=17%  Similarity=0.230  Sum_probs=50.8

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch--HHH-HHH---cCCCe-ee--CCCCCCCchHHHHHH---Hh
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR--KDK-GEA---FGMTD-FI--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~--~~~-~~~---lga~~-v~--~~~~~~~~~~~~~~~---~~  263 (332)
                      ++++||+|+ |++|.++++.+...|+ +|++++++.++  .+. .++   .+... .+  |..+  .+++.+.+.   +.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   78 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTD--KANFDSAIDEAAEK   78 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            578999998 9999999999988999 89999998776  432 222   24332 22  3332  233333332   22


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus        79 ~g--~iD~lv~nAg~   91 (258)
T 3a28_C           79 LG--GFDVLVNNAGI   91 (258)
T ss_dssp             HT--CCCEEEECCCC
T ss_pred             hC--CCCEEEECCCC
Confidence            22  58999999884

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.35  E-value=0.0098  Score=53.14  Aligned_cols=90  Identities=13%  Similarity=0.086  Sum_probs=59.5

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCC---CeeeCCCCCCCchHHHHHHHhcCCCCccE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGM---TDFINPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga---~~v~~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      .+++++|+|+|++|.+++..+...|+.+|++++++.++.+ ++++++.   -.+....            ++.  ..+|+
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~------------~l~--~~aDi  190 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE------------QLK--QSYDV  190 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG------------GCC--SCEEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHH------------Hhc--CCCCE
Confidence            6789999999999999999888899779999999988865 4455542   1222221            111  37999


Q ss_pred             EEEcCCChHHHH---HHHHHhccCCcEEEEEc
Q 043260          272 GFECTGVASLIS---EALEATKLGKGKVMAIG  300 (332)
Q Consensus       272 vid~~g~~~~~~---~~~~~l~~~~G~~v~~G  300 (332)
                      ||++++....-.   .-.+.++++ ..++.+-
T Consensus       191 IInaTp~gm~~~~~~l~~~~l~~~-~~V~Dlv  221 (281)
T 3o8q_A          191 IINSTSASLDGELPAIDPVIFSSR-SVCYDMM  221 (281)
T ss_dssp             EEECSCCCC----CSCCGGGEEEE-EEEEESC
T ss_pred             EEEcCcCCCCCCCCCCCHHHhCcC-CEEEEec
Confidence            999998641100   012345664 5556554

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.34  E-value=0.026  Score=50.13  Aligned_cols=92  Identities=16%  Similarity=0.193  Sum_probs=62.7

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccE
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      ....+++++|+|+|++|.+++..+...|+++|+++.|+.+|.+ ++++++.+ ...  .   .      .    ...+|+
T Consensus       115 ~~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~-~~~--~---~------~----~~~~Di  178 (271)
T 1npy_A          115 HLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-YIN--S---L------E----NQQADI  178 (271)
T ss_dssp             TCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-EES--C---C------T----TCCCSE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-cch--h---h------h----cccCCE
Confidence            3446788999999999999999999999888999999987754 55666642 111  1   0      0    126899


Q ss_pred             EEEcCCChHH-------HHHHHHHhccCCcEEEEEcC
Q 043260          272 GFECTGVASL-------ISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       272 vid~~g~~~~-------~~~~~~~l~~~~G~~v~~G~  301 (332)
                      ||++++....       .......+.++ ..++.+--
T Consensus       179 vInaTp~gm~~~~~~~~~~~~~~~l~~~-~~v~DlvY  214 (271)
T 1npy_A          179 LVNVTSIGMKGGKEEMDLAFPKAFIDNA-SVAFDVVA  214 (271)
T ss_dssp             EEECSSTTCTTSTTTTSCSSCHHHHHHC-SEEEECCC
T ss_pred             EEECCCCCccCccccCCCCCCHHHcCCC-CEEEEeec
Confidence            9999986421       11123456666 66776653

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.34  E-value=0.034  Score=49.65  Aligned_cols=88  Identities=17%  Similarity=0.214  Sum_probs=61.4

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|.. +  .     .+..+.+.      .+|+||.++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~--~-----~~~~~~~~------~~D~vi~~vp   69 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLMEANVAAVVAQGAQ-A--C-----ENNQKVAA------ASDIIFTSLP   69 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHTTTCE-E--C-----SSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe-e--c-----CCHHHHHh------CCCEEEEECC
Confidence            579999999999999888888898 899999999888877665542 1  1     22333332      3799999997


Q ss_pred             ChHHHHHHH-------HHhccCCcEEEEEcC
Q 043260          278 VASLISEAL-------EATKLGKGKVMAIGA  301 (332)
Q Consensus       278 ~~~~~~~~~-------~~l~~~~G~~v~~G~  301 (332)
                      .+..+...+       ..++++ ..++.++.
T Consensus        70 ~~~~~~~v~~~~~~l~~~l~~~-~~vv~~~~   99 (301)
T 3cky_A           70 NAGIVETVMNGPGGVLSACKAG-TVIVDMSS   99 (301)
T ss_dssp             SHHHHHHHHHSTTCHHHHSCTT-CEEEECCC
T ss_pred             CHHHHHHHHcCcchHhhcCCCC-CEEEECCC
Confidence            655454444       345555 55665543

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.33  E-value=0.017  Score=52.86  Aligned_cols=87  Identities=20%  Similarity=0.345  Sum_probs=61.8

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++.++ +.++++|...         .++.+.+.      ..|+|+.+
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~---------~~l~~~l~------~aDvVil~  211 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNAEF---------KPLEDLLR------ESDFVVLA  211 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCCEE---------CCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCccc---------CCHHHHHh------hCCEEEEC
Confidence            56899999999999999999999998 99999998877 6566666521         11222222      36888888


Q ss_pred             CCChH----HH-HHHHHHhccCCcEEEEEc
Q 043260          276 TGVAS----LI-SEALEATKLGKGKVMAIG  300 (332)
Q Consensus       276 ~g~~~----~~-~~~~~~l~~~~G~~v~~G  300 (332)
                      +....    .+ ...+..++++ ..++.++
T Consensus       212 vp~~~~t~~~i~~~~~~~mk~~-ailIn~s  240 (334)
T 2dbq_A          212 VPLTRETYHLINEERLKLMKKT-AILINIA  240 (334)
T ss_dssp             CCCCTTTTTCBCHHHHHHSCTT-CEEEECS
T ss_pred             CCCChHHHHhhCHHHHhcCCCC-cEEEECC
Confidence            76532    22 3556677776 6676665

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.33  E-value=0.01  Score=51.17  Aligned_cols=79  Identities=15%  Similarity=0.236  Sum_probs=49.9

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEE-EcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHHhcC-C
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIG-IDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~-~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      |+++||+|+ |++|..+++.+...|+ +|++ .++++++.+.+    ++.+... .+  |..+  .+++.+.+.+... -
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK--EADVEAMMKTAIDAW   77 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS--HHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCC--HHHHHHHHHHHHHHc
Confidence            468899998 9999999999999999 8888 47877665433    2234322 22  3322  2333333332211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      .++|++|+++|.
T Consensus        78 g~id~li~~Ag~   89 (244)
T 1edo_A           78 GTIDVVVNNAGI   89 (244)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            158999999873

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.32  E-value=0.0078  Score=53.69  Aligned_cols=93  Identities=16%  Similarity=0.141  Sum_probs=64.6

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-----CC---------C--eeeCCCCCCCchHHH
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-----GM---------T--DFINPDDEPNKSISE  258 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-----ga---------~--~v~~~~~~~~~~~~~  258 (332)
                      .++++||++|+|. |..+..+++. +..+|++++.+++..+.+++.     +.         .  .++.      .+..+
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~------~D~~~  145 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI------GDGFE  145 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE------SCHHH
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEE------CchHH
Confidence            4678999999865 6666677776 766999999999988887753     21         1  1221      22333


Q ss_pred             HHHHhcCCCCccEEEEcCC----------ChHHHHHHHHHhccCCcEEEEE
Q 043260          259 LVKEMTHGTGVDYGFECTG----------VASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       259 ~~~~~~~~~g~d~vid~~g----------~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      .+..  . ..||+|+-...          ....+..+.+.|+++ |.++..
T Consensus       146 ~l~~--~-~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~  192 (281)
T 1mjf_A          146 FIKN--N-RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQ  192 (281)
T ss_dssp             HHHH--C-CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEE
T ss_pred             Hhcc--c-CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEE
Confidence            3443  3 37999997554          245678999999998 998875

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.32  E-value=0.0061  Score=51.90  Aligned_cols=103  Identities=11%  Similarity=0.172  Sum_probs=68.5

Q ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCCCe---eeCCCCCCCchHHHHHHHh
Q 043260          192 FKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGMTD---FINPDDEPNKSISELVKEM  263 (332)
Q Consensus       192 ~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga~~---v~~~~~~~~~~~~~~~~~~  263 (332)
                      ....++++||-+|+|. |..+..+++... ..+|+.++.+++..+.+++    .|...   ++.      .+..+.+..+
T Consensus        54 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~------~d~~~~~~~~  126 (223)
T 3duw_A           54 VQIQGARNILEIGTLG-GYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRT------GLALDSLQQI  126 (223)
T ss_dssp             HHHHTCSEEEEECCTT-SHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE------SCHHHHHHHH
T ss_pred             HHhhCCCEEEEecCCc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE------cCHHHHHHHH
Confidence            3456789999999975 788888888763 2399999999988776643    45432   222      2222333332


Q ss_pred             cCC--CCccEEEEcCCC---hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          264 THG--TGVDYGFECTGV---ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       264 ~~~--~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ...  ..||+|+-....   ...+..+.+.|+++ |.+++-...
T Consensus       127 ~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~~~  169 (223)
T 3duw_A          127 ENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPG-TVIIGDNVV  169 (223)
T ss_dssp             HHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEESCS
T ss_pred             HhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCC-cEEEEeCCC
Confidence            211  369999965533   24578889999998 988876543

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.31  E-value=0.0096  Score=53.03  Aligned_cols=95  Identities=18%  Similarity=0.164  Sum_probs=64.4

Q ss_pred             cccchhhhHHHHHHhhCCCCCCEEEEECCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCch
Q 043260          177 LSCGYSSGFGAAWKEFKVEKGSSVAVFGLG-AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS  255 (332)
Q Consensus       177 l~~~~~ta~~al~~~~~~~~g~~vlV~G~g-~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~  255 (332)
                      ++|+...++..+.+..---.|++++|+|.| .+|..+++++...|+ +|+++.+..                      .+
T Consensus       141 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t----------------------~~  197 (285)
T 3l07_A          141 ESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFT----------------------TD  197 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC----------------------SS
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc----------------------hh
Confidence            444444444434332223589999999985 589999999999999 888875431                      22


Q ss_pred             HHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       256 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +.+.+      +.+|+||.++|.+..+.  .++++++ ..++.+|...
T Consensus       198 L~~~~------~~ADIVI~Avg~p~~I~--~~~vk~G-avVIDvgi~~  236 (285)
T 3l07_A          198 LKSHT------TKADILIVAVGKPNFIT--ADMVKEG-AVVIDVGINH  236 (285)
T ss_dssp             HHHHH------TTCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCEE
T ss_pred             HHHhc------ccCCEEEECCCCCCCCC--HHHcCCC-cEEEEecccC
Confidence            33222      25899999999864443  2567887 8999999764

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.31  E-value=0.017  Score=49.66  Aligned_cols=96  Identities=17%  Similarity=0.069  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      .++++++||-+|+|. |..+..+++. |. +|+++|.+++..+.+++.  -.++..      +..+.+..+. ...||+|
T Consensus        38 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~~~--~~~~~~------d~~~~~~~~~-~~~fD~i  105 (240)
T 3dli_A           38 YFKGCRRVLDIGCGR-GEFLELCKEE-GI-ESIGVDINEDMIKFCEGK--FNVVKS------DAIEYLKSLP-DKYLDGV  105 (240)
T ss_dssp             GTTTCSCEEEETCTT-THHHHHHHHH-TC-CEEEECSCHHHHHHHHTT--SEEECS------CHHHHHHTSC-TTCBSEE
T ss_pred             hhcCCCeEEEEeCCC-CHHHHHHHhC-CC-cEEEEECCHHHHHHHHhh--cceeec------cHHHHhhhcC-CCCeeEE
Confidence            357889999999865 5556666664 87 899999999988888776  333322      2222222333 3379999


Q ss_pred             EEcCC-----C---hHHHHHHHHHhccCCcEEEEEcC
Q 043260          273 FECTG-----V---ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       273 id~~g-----~---~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      +....     .   ...+..+.+.|+++ |.+++.-.
T Consensus       106 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  141 (240)
T 3dli_A          106 MISHFVEHLDPERLFELLSLCYSKMKYS-SYIVIESP  141 (240)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHBCTT-CCEEEEEE
T ss_pred             EECCchhhCCcHHHHHHHHHHHHHcCCC-cEEEEEeC
Confidence            97432     2   25678999999998 98887543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.31  E-value=0.02  Score=50.63  Aligned_cols=86  Identities=21%  Similarity=0.333  Sum_probs=60.8

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC-eeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT-DFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      +|.|+|+|.+|.+.+..+...|. +|+++++++++.+.+.+.|.. .+...           ..+.   .++|+||.++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~---~~~D~vi~av~   66 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQD-----------LSLL---QTAKIIFLCTP   66 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESC-----------GGGG---TTCSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCccccCC-----------HHHh---CCCCEEEEECC
Confidence            68999999999999999888998 899999999988888787753 22211           1122   25899999998


Q ss_pred             ChHHHHHHHHH----hccCCcEEEEEcC
Q 043260          278 VASLISEALEA----TKLGKGKVMAIGA  301 (332)
Q Consensus       278 ~~~~~~~~~~~----l~~~~G~~v~~G~  301 (332)
                      .. .+...++.    ++++ ..++.++.
T Consensus        67 ~~-~~~~~~~~l~~~~~~~-~~vv~~~~   92 (279)
T 2f1k_A           67 IQ-LILPTLEKLIPHLSPT-AIVTDVAS   92 (279)
T ss_dssp             HH-HHHHHHHHHGGGSCTT-CEEEECCS
T ss_pred             HH-HHHHHHHHHHhhCCCC-CEEEECCC
Confidence            74 44444443    4444 56666544

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.29  E-value=0.0019  Score=58.68  Aligned_cols=96  Identities=16%  Similarity=0.209  Sum_probs=63.4

Q ss_pred             CCCCEEEEECCC-hHHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHHcCCCee-eC----CCCCCCchHHHHHHHhcCCC
Q 043260          195 EKGSSVAVFGLG-AVGLGVMDRARIQGAAKIIGIDKNPCRK-DKGEAFGMTDF-IN----PDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       195 ~~g~~vlV~G~g-~vG~~~~~la~~~G~~~Vi~~~~~~~~~-~~~~~lga~~v-~~----~~~~~~~~~~~~~~~~~~~~  267 (332)
                      -.|.+++|+|+| .+|..+++++...|+ +|++++++..+. +.+.+++.... ..    ...   .++.+.++      
T Consensus       175 l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~---~~L~e~l~------  244 (320)
T 1edz_A          175 LYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSE---DLLKKCSL------  244 (320)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSSCCCCEEEEEEECCH---HHHHHHHH------
T ss_pred             CCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHhhhcccccccccccH---hHHHHHhc------
Confidence            478999999997 569999999999998 899998875432 22233332100 00    000   23333332      


Q ss_pred             CccEEEEcCCChHH-HHHHHHHhccCCcEEEEEcCCC
Q 043260          268 GVDYGFECTGVASL-ISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       268 g~d~vid~~g~~~~-~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .+|+||.++|.+.. +..  ++++++ ..++.+|.+.
T Consensus       245 ~ADIVIsAtg~p~~vI~~--e~vk~G-avVIDVgi~r  278 (320)
T 1edz_A          245 DSDVVITGVPSENYKFPT--EYIKEG-AVCINFACTK  278 (320)
T ss_dssp             HCSEEEECCCCTTCCBCT--TTSCTT-EEEEECSSSC
T ss_pred             cCCEEEECCCCCcceeCH--HHcCCC-eEEEEcCCCc
Confidence            48999999998643 332  336887 8999999875

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.29  E-value=0.012  Score=52.63  Aligned_cols=77  Identities=16%  Similarity=0.212  Sum_probs=51.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH--------cCCCe-ee--CCCCCCCchHHHHHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA--------FGMTD-FI--NPDDEPNKSISELVKE  262 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~--------lga~~-v~--~~~~~~~~~~~~~~~~  262 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+ ++        .+... .+  |..+  .+++.+.+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~   93 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN--EEEVNNLVKS   93 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC--HHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCC--HHHHHHHHHH
Confidence            4688999998 9999999999999998 899999988776533 22        13221 22  3322  2333333322


Q ss_pred             ---hcCCCCccEEEEcCC
Q 043260          263 ---MTHGTGVDYGFECTG  277 (332)
Q Consensus       263 ---~~~~~g~d~vid~~g  277 (332)
                         ..+  ++|++|+++|
T Consensus        94 ~~~~~g--~id~li~~Ag  109 (303)
T 1yxm_A           94 TLDTFG--KINFLVNNGG  109 (303)
T ss_dssp             HHHHHS--CCCEEEECCC
T ss_pred             HHHHcC--CCCEEEECCC
Confidence               222  5899999988

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.29  E-value=0.0078  Score=52.23  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=69.2

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHc----CCCeeeCCCCCCCchHHHHHHHhc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAF----GMTDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      +...++||++||=+|+|. |..+..+++..|. .+|+++|.+++..+.+++.    +.-..+..+...+..    .. ..
T Consensus        71 ~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~----~~-~~  144 (233)
T 4df3_A           71 IELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEK----YR-HL  144 (233)
T ss_dssp             SCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGG----GT-TT
T ss_pred             hhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccc----cc-cc
Confidence            456899999999999987 8888899998874 5899999999888766543    211122111101111    11 11


Q ss_pred             CCCCccEEEEcCCCh----HHHHHHHHHhccCCcEEEEE
Q 043260          265 HGTGVDYGFECTGVA----SLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       265 ~~~g~d~vid~~g~~----~~~~~~~~~l~~~~G~~v~~  299 (332)
                       ...+|+|+.....+    ..+.++.+.|+|+ |++++.
T Consensus       145 -~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpG-G~lvI~  181 (233)
T 4df3_A          145 -VEGVDGLYADVAQPEQAAIVVRNARFFLRDG-GYMLMA  181 (233)
T ss_dssp             -CCCEEEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -cceEEEEEEeccCChhHHHHHHHHHHhccCC-CEEEEE
Confidence             12589998766543    2567888899998 998874

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.26  E-value=0.016  Score=48.29  Aligned_cols=62  Identities=23%  Similarity=0.391  Sum_probs=44.5

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      ++||+|+ |.+|..+++.+. .|. +|++++++.+          ....|..+  .+++.+.+.+.  + ++|+||+++|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~----------~~~~D~~~--~~~~~~~~~~~--~-~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSG----------DVTVDITN--IDSIKKMYEQV--G-KVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSS----------SEECCTTC--HHHHHHHHHHH--C-CEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCcc----------ceeeecCC--HHHHHHHHHHh--C-CCCEEEECCC
Confidence            7999998 999999999888 898 9999988764          12223333  23344444443  2 6899999987

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.24  E-value=0.01  Score=52.59  Aligned_cols=77  Identities=12%  Similarity=0.190  Sum_probs=51.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HH---cCC---C-eee--CCCCCCCchHHHHHH---
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EA---FGM---T-DFI--NPDDEPNKSISELVK---  261 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~---lga---~-~v~--~~~~~~~~~~~~~~~---  261 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ ++   .+.   . ..+  |..+  .+++.+.+.   
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   81 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT--EDGQDQIINSTL   81 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCC--HHHHHHHHHHHH
Confidence            4678999998 9999999999999999 999999998776543 22   232   2 222  3332  233333332   


Q ss_pred             HhcCCCCccEEEEcCC
Q 043260          262 EMTHGTGVDYGFECTG  277 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g  277 (332)
                      +..+  ++|++|+++|
T Consensus        82 ~~~g--~iD~lv~nAg   95 (280)
T 1xkq_A           82 KQFG--KIDVLVNNAG   95 (280)
T ss_dssp             HHHS--CCCEEEECCC
T ss_pred             HhcC--CCCEEEECCC
Confidence            2222  5899999987

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.24  E-value=0.0082  Score=52.06  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=52.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~---~~~  264 (332)
                      .++++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    ++.+... .+  |..+  .+++.+.+.   +..
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence            5688999998 9999999999998998 999999988765432    2234332 22  3322  233333332   222


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  ++|+||+++|.
T Consensus        87 ~--~~d~vi~~Ag~   98 (255)
T 1fmc_A           87 G--KVDILVNNAGG   98 (255)
T ss_dssp             S--SCCEEEECCCC
T ss_pred             C--CCCEEEECCCC
Confidence            2  69999999873

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.24  E-value=0.016  Score=52.19  Aligned_cols=100  Identities=16%  Similarity=0.205  Sum_probs=69.3

Q ss_pred             HhhC-CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC---eeeCCCCCCCchHHHHHH
Q 043260          190 KEFK-VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT---DFINPDDEPNKSISELVK  261 (332)
Q Consensus       190 ~~~~-~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~~~  261 (332)
                      +... ++++++||-+|+|. |..+..+++..|. +|+++|.+++..+.+++    .|..   .++..+.   .++     
T Consensus       110 ~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~-----  179 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM---LDT-----  179 (312)
T ss_dssp             TTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC-----
T ss_pred             HHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---hcC-----
Confidence            3344 78899999999976 7788888887787 99999999988876654    4432   2222211   110     


Q ss_pred             HhcCCCCccEEEEcCC-----ChHHHHHHHHHhccCCcEEEEEcC
Q 043260          262 EMTHGTGVDYGFECTG-----VASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g-----~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                       -.....||+|+..-.     -...+..+.+.|+++ |++++...
T Consensus       180 -~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  222 (312)
T 3vc1_A          180 -PFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVG-GRYVTITG  222 (312)
T ss_dssp             -CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             -CCCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCC-cEEEEEEc
Confidence             012337999987432     245788999999998 99987764

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=96.23  E-value=0.03  Score=44.94  Aligned_cols=102  Identities=17%  Similarity=0.144  Sum_probs=65.1

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      ++++++||-+|+|. |..+..+++..|. .+++++|.++ ..+.    ..-.++..+. ......+.+........||+|
T Consensus        20 ~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----~~~~~~~~d~-~~~~~~~~~~~~~~~~~~D~i   92 (180)
T 1ej0_A           20 FKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI----VGVDFLQGDF-RDELVMKALLERVGDSKVQVV   92 (180)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC----TTEEEEESCT-TSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc----CcEEEEEccc-ccchhhhhhhccCCCCceeEE
Confidence            68899999999977 8888888888642 4999999887 3321    1112222221 112222233332334479999


Q ss_pred             EEc-----CCC------------hHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          273 FEC-----TGV------------ASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       273 id~-----~g~------------~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +..     .+.            ...+..+.+.|+++ |++++.....
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~~  139 (180)
T 1ej0_A           93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVKVFQG  139 (180)
T ss_dssp             EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEESS
T ss_pred             EECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC-cEEEEEEecC
Confidence            983     333            25678889999998 9998865543

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.23  E-value=0.013  Score=51.74  Aligned_cols=97  Identities=20%  Similarity=0.158  Sum_probs=63.2

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQ--GAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~--G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      ++|||+|+ |.+|..+++.+...  |. +|++++++.++.+.+...+...+. |..+   .   +.+.+...  ++|+||
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~D~~d---~---~~l~~~~~--~~d~vi   71 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGVEVRHGDYNQ---P---ESLQKAFA--GVSKLL   71 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTCEEEECCTTC---H---HHHHHHTT--TCSEEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCCeEEEeccCC---H---HHHHHHHh--cCCEEE
Confidence            36899998 99999999888877  87 899999988776655544543332 3322   1   23444433  589999


Q ss_pred             EcCCCh-------HHHHHHHHHhccCC-cEEEEEcCCC
Q 043260          274 ECTGVA-------SLISEALEATKLGK-GKVMAIGAAN  303 (332)
Q Consensus       274 d~~g~~-------~~~~~~~~~l~~~~-G~~v~~G~~~  303 (332)
                      .+++..       .....+++.+...+ ++++.+++..
T Consensus        72 ~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~  109 (287)
T 2jl1_A           72 FISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAF  109 (287)
T ss_dssp             ECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             EcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            998741       12334555555441 4888887654

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.21  E-value=0.028  Score=49.39  Aligned_cols=79  Identities=15%  Similarity=0.083  Sum_probs=49.3

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHH----HHcCCC-eee--CCCCCCCchHHHHH---HH
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGID-KNPCRKDKG----EAFGMT-DFI--NPDDEPNKSISELV---KE  262 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~-~~~~~~~~~----~~lga~-~v~--~~~~~~~~~~~~~~---~~  262 (332)
                      ..++++||+|+ |++|.++++.+...|+ +|++++ ++.++.+..    ++.+.. .++  |..+  .++..+.+   .+
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   99 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVAD--FESCERCAEKVLA   99 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHH
Confidence            35678999998 9999999999999999 898887 444443322    223432 222  3332  23333322   23


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      ..+  +.|++|+++|.
T Consensus       100 ~~g--~id~li~nAg~  113 (269)
T 3gk3_A          100 DFG--KVDVLINNAGI  113 (269)
T ss_dssp             HHS--CCSEEEECCCC
T ss_pred             HcC--CCCEEEECCCc
Confidence            332  58999999884

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.21  E-value=0.027  Score=49.11  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=67.0

Q ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhc-
Q 043260          192 FKVEKGSSVAVFGLGAVGLGVMDRARIQ--GAAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMT-  264 (332)
Q Consensus       192 ~~~~~g~~vlV~G~g~vG~~~~~la~~~--G~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~-  264 (332)
                      ....++++||-+|+|. |..++.+++.+  +. +|+.++.+++..+.+++    .|.+.-+....   .+..+.+..+. 
T Consensus        75 ~~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~---gda~~~l~~l~~  149 (247)
T 1sui_A           75 LKLINAKNTMEIGVYT-GYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFRE---GPALPVLDEMIK  149 (247)
T ss_dssp             HHHTTCCEEEEECCGG-GHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHH
T ss_pred             HHhhCcCEEEEeCCCc-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE---CCHHHHHHHHHh
Confidence            3446778999999875 77888888886  45 99999999988876654    45421111111   22223333331 


Q ss_pred             ---CCCCccEEEEcCCC---hHHHHHHHHHhccCCcEEEEEc
Q 043260          265 ---HGTGVDYGFECTGV---ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       265 ---~~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                         ....||+||-....   ...+..+.+.|+++ |.+++-.
T Consensus       150 ~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d~  190 (247)
T 1sui_A          150 DEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN  190 (247)
T ss_dssp             SGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEEC
T ss_pred             ccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCC-eEEEEec
Confidence               02369999965432   34578899999998 9988643

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=96.20  E-value=0.024  Score=47.82  Aligned_cols=102  Identities=18%  Similarity=0.183  Sum_probs=69.2

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHH-HhcCCCC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVK-EMTHGTG  268 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~-~~~~~~g  268 (332)
                      +.....++.+||-+|+|. |..+..+++. |. +|+++|.+++-++.+++.+...+...+      +..... ....+..
T Consensus        46 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~  116 (227)
T 3e8s_A           46 LAILGRQPERVLDLGCGE-GWLLRALADR-GI-EAVGVDGDRTLVDAARAAGAGEVHLAS------YAQLAEAKVPVGKD  116 (227)
T ss_dssp             HHHHHTCCSEEEEETCTT-CHHHHHHHTT-TC-EEEEEESCHHHHHHHHHTCSSCEEECC------HHHHHTTCSCCCCC
T ss_pred             HHhhcCCCCEEEEeCCCC-CHHHHHHHHC-CC-EEEEEcCCHHHHHHHHHhcccccchhh------HHhhcccccccCCC
Confidence            334456779999999865 6666666665 77 999999999999988887544343222      211111 1133435


Q ss_pred             ccEEEEcCCC-----hHHHHHHHHHhccCCcEEEEEcC
Q 043260          269 VDYGFECTGV-----ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       269 ~d~vid~~g~-----~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      ||+|+....-     ...+..+.+.|+++ |++++.-.
T Consensus       117 fD~v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~~  153 (227)
T 3e8s_A          117 YDLICANFALLHQDIIELLSAMRTLLVPG-GALVIQTL  153 (227)
T ss_dssp             EEEEEEESCCCSSCCHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             ccEEEECchhhhhhHHHHHHHHHHHhCCC-eEEEEEec
Confidence            9999985432     35788999999998 99888654

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=96.20  E-value=0.018  Score=57.17  Aligned_cols=80  Identities=16%  Similarity=0.138  Sum_probs=47.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC---------CcchHH----HHHHcCCCeeeCCCCCCCchHHHHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK---------NPCRKD----KGEAFGMTDFINPDDEPNKSISELVK  261 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~---------~~~~~~----~~~~lga~~v~~~~~~~~~~~~~~~~  261 (332)
                      .|+++||+|+ +++|.+.++.+...|+ +|+++++         +.++.+    .+++.+...+.+..+  ..+..+.+.
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d--~~~~~~~~~   94 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNS--VIDGAKVIE   94 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--------------CHHHHHHHHHHTTCCEEECCCC--GGGHHHHHC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCC--HHHHHHHHH
Confidence            5788999998 9999999999999999 9999876         444433    234456665666554  233333333


Q ss_pred             HhcCC-CCccEEEEcCCC
Q 043260          262 EMTHG-TGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~-~g~d~vid~~g~  278 (332)
                      +.... .+.|++|+++|.
T Consensus        95 ~~~~~~g~iDiLVnnAGi  112 (613)
T 3oml_A           95 TAIKAFGRVDILVNNAGI  112 (613)
T ss_dssp             ----------CEECCCCC
T ss_pred             HHHHHCCCCcEEEECCCC
Confidence            22111 258999999884

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.20  E-value=0.0071  Score=52.34  Aligned_cols=76  Identities=14%  Similarity=0.209  Sum_probs=51.0

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc----CCC-eee--CCCCCCCchHHHHHH---Hhc
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF----GMT-DFI--NPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l----ga~-~v~--~~~~~~~~~~~~~~~---~~~  264 (332)
                      ++++||+|+ |++|..++..+...|+ +|++++++.++.+.+ +++    +.. .++  |..+  .+++.+.+.   +..
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   78 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVAD--EGDVNAAIAATMEQF   78 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHh
Confidence            578999998 9999999999999998 999999988776543 222    322 122  3322  233333333   222


Q ss_pred             CCCCccEEEEcCC
Q 043260          265 HGTGVDYGFECTG  277 (332)
Q Consensus       265 ~~~g~d~vid~~g  277 (332)
                      +  ++|++|+++|
T Consensus        79 ~--~id~li~~Ag   89 (250)
T 2cfc_A           79 G--AIDVLVNNAG   89 (250)
T ss_dssp             S--CCCEEEECCC
T ss_pred             C--CCCEEEECCC
Confidence            2  5899999987

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.19  E-value=0.012  Score=53.50  Aligned_cols=81  Identities=20%  Similarity=0.217  Sum_probs=51.5

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC----------cchHHH----HHHcCCCeeeCCCCC-CCchHHH
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN----------PCRKDK----GEAFGMTDFINPDDE-PNKSISE  258 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~----------~~~~~~----~~~lga~~v~~~~~~-~~~~~~~  258 (332)
                      -.|+++||+|+ +++|.++++.+...|+ +|++++++          .++.+.    +++.|.......-+. +.+++.+
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  103 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAG  103 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHH
Confidence            35788999998 9999999999999999 99999886          444332    233454322211111 1233332


Q ss_pred             HHH---HhcCCCCccEEEEcCCC
Q 043260          259 LVK---EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       259 ~~~---~~~~~~g~d~vid~~g~  278 (332)
                      .+.   +..+  ++|++|+++|.
T Consensus       104 ~~~~~~~~~g--~iD~lv~nAg~  124 (322)
T 3qlj_A          104 LIQTAVETFG--GLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHHHS--CCCEEECCCCC
T ss_pred             HHHHHHHHcC--CCCEEEECCCC
Confidence            232   2222  58999999984

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.17  E-value=0.0082  Score=53.02  Aligned_cols=72  Identities=14%  Similarity=0.154  Sum_probs=48.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee--eCCCCCCCchHH---HHHHHhcCCCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF--INPDDEPNKSIS---ELVKEMTHGTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v--~~~~~~~~~~~~---~~~~~~~~~~g~  269 (332)
                      +|+++||+|+ +++|++.++.+...|+ +|+++++++++.     +.....  .|..+  .++..   +.+.+..+  +.
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~-----~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G--~i   79 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPEG-----LPEELFVEADLTT--KEGCAIVAEATRQRLG--GV   79 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCTT-----SCTTTEEECCTTS--HHHHHHHHHHHHHHTS--SC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchhC-----CCcEEEEEcCCCC--HHHHHHHHHHHHHHcC--CC
Confidence            7899999998 9999999999999999 999999875431     111111  22222  23333   23333333  58


Q ss_pred             cEEEEcCC
Q 043260          270 DYGFECTG  277 (332)
Q Consensus       270 d~vid~~g  277 (332)
                      |+++++.|
T Consensus        80 DilVnnAG   87 (261)
T 4h15_A           80 DVIVHMLG   87 (261)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.17  E-value=0.0075  Score=52.34  Aligned_cols=80  Identities=25%  Similarity=0.320  Sum_probs=51.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC-cchHHHH-H---HcCCC-eee--CCCCCCCchHHHHHHHhcCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN-PCRKDKG-E---AFGMT-DFI--NPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~-~~~~~~~-~---~lga~-~v~--~~~~~~~~~~~~~~~~~~~~  266 (332)
                      .++++||+|+ |.+|..+++.+...|+ +|++++++ .++.+.+ +   +.+.. .++  |..+  .+++.+.+.+....
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLAT--SEACQQLVDEFVAK   82 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999998 9999999999999999 89999998 6665432 2   22432 122  3322  23333333322110


Q ss_pred             -CCccEEEEcCCC
Q 043260          267 -TGVDYGFECTGV  278 (332)
Q Consensus       267 -~g~d~vid~~g~  278 (332)
                       .++|++|+++|.
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             159999999884

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=96.16  E-value=0.013  Score=55.18  Aligned_cols=84  Identities=21%  Similarity=0.183  Sum_probs=54.3

Q ss_pred             hhCC-CCCCEEEEECC-ChHHHHHHHHHHH-cCCCeEEEEcCCcchH----------------HHHHHcCCCee-e--CC
Q 043260          191 EFKV-EKGSSVAVFGL-GAVGLGVMDRARI-QGAAKIIGIDKNPCRK----------------DKGEAFGMTDF-I--NP  248 (332)
Q Consensus       191 ~~~~-~~g~~vlV~G~-g~vG~~~~~la~~-~G~~~Vi~~~~~~~~~----------------~~~~~lga~~v-~--~~  248 (332)
                      ...+ +.++++||+|+ +++|++.+..+.. .|+ +|++++++.++.                +.+++.|.... +  |.
T Consensus        54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dv  132 (422)
T 3s8m_A           54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDA  132 (422)
T ss_dssp             TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             ccccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecC
Confidence            3445 35778899998 9999998888888 999 999988765431                34556675432 2  32


Q ss_pred             CCCCCchHH---HHHHHhcCCCCccEEEEcCCC
Q 043260          249 DDEPNKSIS---ELVKEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       249 ~~~~~~~~~---~~~~~~~~~~g~d~vid~~g~  278 (332)
                      .+  .++..   +.+.+..+| +.|++++++|.
T Consensus       133 td--~~~v~~~v~~i~~~~~G-~IDiLVNNAG~  162 (422)
T 3s8m_A          133 FS--DAARAQVIELIKTEMGG-QVDLVVYSLAS  162 (422)
T ss_dssp             TS--HHHHHHHHHHHHHHSCS-CEEEEEECCCC
T ss_pred             CC--HHHHHHHHHHHHHHcCC-CCCEEEEcCcc
Confidence            22  23333   233333323 69999999875

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.16  E-value=0.0027  Score=55.12  Aligned_cols=97  Identities=12%  Similarity=0.063  Sum_probs=65.8

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC----C-eeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM----T-DFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga----~-~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ..+|.+||-+|+|. |..+..+++..+. +|++++.+++-++.+++...    . .++..      +....+..+ ....
T Consensus        58 ~~~G~rVLdiG~G~-G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~------~a~~~~~~~-~~~~  128 (236)
T 3orh_A           58 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKG------LWEDVAPTL-PDGH  128 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEES------CHHHHGGGS-CTTC
T ss_pred             ccCCCeEEEECCCc-cHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEee------hHHhhcccc-cccC
Confidence            47899999999975 7888888876665 89999999998888876432    1 22221      222222233 3337


Q ss_pred             ccEEE-EcCCC----------hHHHHHHHHHhccCCcEEEEEc
Q 043260          269 VDYGF-ECTGV----------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       269 ~d~vi-d~~g~----------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ||.|+ |....          ...+.++.+.|+|+ |+++++.
T Consensus       129 FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG-G~l~f~~  170 (236)
T 3orh_A          129 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCN  170 (236)
T ss_dssp             EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred             CceEEEeeeecccchhhhcchhhhhhhhhheeCCC-CEEEEEe
Confidence            99884 43322          13567889999998 9999864

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.16  E-value=0.013  Score=50.88  Aligned_cols=100  Identities=16%  Similarity=0.094  Sum_probs=69.0

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHHcCC-CeeeCCCCCCCchHHHHHHHhcC
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEAFGM-TDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~lga-~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      +.+.....++++||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++... -.++..+.   .+       +..
T Consensus        25 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~---~~-------~~~   92 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGP-GNSTELLTDRYGVN-VITGIDSDDDMLEKAADRLPNTNFGKADL---AT-------WKP   92 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTT-THHHHHHHHHHCTT-SEEEEESCHHHHHHHHHHSTTSEEEECCT---TT-------CCC
T ss_pred             HHHhcCCCCCCEEEEecCcC-CHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHhCCCcEEEECCh---hh-------cCc
Confidence            33555678889999999975 77777888776 55 99999999998888876532 22322221   11       112


Q ss_pred             CCCccEEEEcCC-----C-hHHHHHHHHHhccCCcEEEEEc
Q 043260          266 GTGVDYGFECTG-----V-ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       266 ~~g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ...||+|+....     . ...+..+.+.|+++ |++++.-
T Consensus        93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~  132 (259)
T 2p35_A           93 AQKADLLYANAVFQWVPDHLAVLSQLMDQLESG-GVLAVQM  132 (259)
T ss_dssp             SSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             cCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCC-eEEEEEe
Confidence            337999998653     2 24577888999998 9888764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.15  E-value=0.04  Score=48.45  Aligned_cols=90  Identities=18%  Similarity=0.156  Sum_probs=62.9

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      ++|||+|+|.+|..++..+...|. +|+++++++.+.+.+...+...+. |..     ++    .    -.++|+||.++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~-----d~----~----~~~~d~vi~~a   71 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLLWPGE-----EP----S----LDGVTHLLIST   71 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTEEEEESSSS-----CC----C----CTTCCEEEECC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCCeEEEeccc-----cc----c----cCCCCEEEECC
Confidence            689999999999999999988998 999999999888777766654443 222     11    1    23799999998


Q ss_pred             CCh----HHHHHHHHHhcc--C-CcEEEEEcC
Q 043260          277 GVA----SLISEALEATKL--G-KGKVMAIGA  301 (332)
Q Consensus       277 g~~----~~~~~~~~~l~~--~-~G~~v~~G~  301 (332)
                      +..    ......++.++.  . -.+++.+++
T Consensus        72 ~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           72 APDSGGDPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             CCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             CccccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence            742    223444444433  1 157887764

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.019  Score=51.25  Aligned_cols=81  Identities=10%  Similarity=0.126  Sum_probs=53.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCC--CeEEEEcCCcchHHHHH-Hc-----CCCe-ee--CCCCCCCchHHHHHHHh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGA--AKIIGIDKNPCRKDKGE-AF-----GMTD-FI--NPDDEPNKSISELVKEM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~--~~Vi~~~~~~~~~~~~~-~l-----ga~~-v~--~~~~~~~~~~~~~~~~~  263 (332)
                      .|+++||+|+ |++|.++++.+...|+  .+|++++++.++.+.+. ++     +... .+  |..+  .+++.+.+.+.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~  109 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQ--AEKIKPFIENL  109 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTC--GGGHHHHHHTS
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCC--HHHHHHHHHHH
Confidence            4789999998 9999998877766664  38999999988776442 22     3321 22  3333  35555555443


Q ss_pred             cCC-CCccEEEEcCCC
Q 043260          264 THG-TGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~-~g~d~vid~~g~  278 (332)
                      ... .++|++|+++|.
T Consensus       110 ~~~~g~iD~lVnnAG~  125 (287)
T 3rku_A          110 PQEFKDIDILVNNAGK  125 (287)
T ss_dssp             CGGGCSCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence            221 158999999883

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.13  E-value=0.023  Score=49.83  Aligned_cols=80  Identities=18%  Similarity=0.242  Sum_probs=50.9

Q ss_pred             CCCEEEEECC---ChHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHH-HHcCCCeee--CCCCCCCchHHHHHHHhcCC
Q 043260          196 KGSSVAVFGL---GAVGLGVMDRARIQGAAKIIGIDKNPC---RKDKG-EAFGMTDFI--NPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       196 ~g~~vlV~G~---g~vG~~~~~la~~~G~~~Vi~~~~~~~---~~~~~-~~lga~~v~--~~~~~~~~~~~~~~~~~~~~  266 (332)
                      .++++||+|+   |++|.++++.+...|+ +|++++++++   ..+.+ .+.+...++  |..+  .+++.+.+.+....
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE--DASIDTMFAELGKV   84 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCC--HHHHHHHHHHHHHH
Confidence            5688999986   6999999999999999 8999998762   22222 223433333  3332  23333334333221


Q ss_pred             -CCccEEEEcCCC
Q 043260          267 -TGVDYGFECTGV  278 (332)
Q Consensus       267 -~g~d~vid~~g~  278 (332)
                       .++|++|+++|.
T Consensus        85 ~g~iD~lv~~Ag~   97 (265)
T 1qsg_A           85 WPKFDGFVHSIGF   97 (265)
T ss_dssp             CSSEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             258999999873

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.12  E-value=0.013  Score=52.50  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=32.6

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ...+|+|+|+|++|-.+++.+...|..++.++|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            457899999999999999999999999999999765

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.12  E-value=0.01  Score=52.07  Aligned_cols=95  Identities=11%  Similarity=0.007  Sum_probs=62.1

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCC---------------------C-eeeCCC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGM---------------------T-DFINPD  249 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga---------------------~-~v~~~~  249 (332)
                      ...++.+||.+|+|. |..+..+++ .|+ +|+++|.+++-++.+++ .+.                     . .++..+
T Consensus        65 ~~~~~~~vLD~GCG~-G~~~~~La~-~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D  141 (252)
T 2gb4_A           65 KGQSGLRVFFPLCGK-AIEMKWFAD-RGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS  141 (252)
T ss_dssp             TTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC
T ss_pred             cCCCCCeEEEeCCCC-cHHHHHHHH-CCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECc
Confidence            346889999999976 777777776 488 99999999998887754 321                     1 111111


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCC--------hHHHHHHHHHhccCCcEEEEE
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGV--------ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      -   .++    . ......||+|++...-        ...+..+.+.|+|+ |+++++
T Consensus       142 ~---~~l----~-~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG-G~l~l~  190 (252)
T 2gb4_A          142 I---FDL----P-RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE-FQYLVA  190 (252)
T ss_dssp             T---TTG----G-GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEE
T ss_pred             c---ccC----C-cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC-eEEEEE
Confidence            1   111    0 1111379999985321        13577888999998 998644

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.12  E-value=0.042  Score=50.11  Aligned_cols=76  Identities=18%  Similarity=0.128  Sum_probs=49.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHc--CC-Ceee--CCCCCCCchHHHHHHHhcCCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAF--GM-TDFI--NPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~l--ga-~~v~--~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      .+++|||+|+ |.+|..+++.+...|. +|++++++..+.+. ...+  +. -.++  |..+  .+++.+.+...    +
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~----~   80 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD--QNKLLESIREF----Q   80 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC--HHHHHHHHHHH----C
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcccchhhHhhccCCceEEEEccccC--HHHHHHHHHhc----C
Confidence            3578999998 9999999999988998 99999987755432 2222  11 1222  2222  22333333322    5


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|+||.+++.
T Consensus        81 ~d~vih~A~~   90 (357)
T 1rkx_A           81 PEIVFHMAAQ   90 (357)
T ss_dssp             CSEEEECCSC
T ss_pred             CCEEEECCCC
Confidence            8999999883

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.11  E-value=0.0092  Score=54.69  Aligned_cols=97  Identities=18%  Similarity=0.171  Sum_probs=66.1

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc------CC--C--eeeCCCCCCCchHHHHHHHh
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF------GM--T--DFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l------ga--~--~v~~~~~~~~~~~~~~~~~~  263 (332)
                      ..++.+||.+|+|. |..+..+++..+..+|++++.+++-.+.+++.      |.  .  .++.      .+..+.+...
T Consensus       118 ~~~~~~VLdIG~G~-G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~------~D~~~~l~~~  190 (334)
T 1xj5_A          118 IPNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI------GDGVAFLKNA  190 (334)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE------SCHHHHHHTS
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE------CCHHHHHHhc
Confidence            45678999999865 66677777765545999999999888877653      11  1  2222      2333334333


Q ss_pred             cCCCCccEEEEcCC----------ChHHHHHHHHHhccCCcEEEEE
Q 043260          264 THGTGVDYGFECTG----------VASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       264 ~~~~g~d~vid~~g----------~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      . ...||+|+....          ....+..+.+.|+++ |.+++-
T Consensus       191 ~-~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~  234 (334)
T 1xj5_A          191 A-EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQ  234 (334)
T ss_dssp             C-TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEE
T ss_pred             c-CCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence            2 237999997443          235788999999998 999885

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.11  E-value=0.042  Score=48.87  Aligned_cols=74  Identities=19%  Similarity=0.130  Sum_probs=53.9

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~  278 (332)
                      +|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|....        .+..+.+.      .+|+||.++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~------~~Dvvi~~vp~   66 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFPDACKEFQDAGEQVV--------SSPADVAE------KADRIITMLPT   66 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSSTHHHHHHHTTTCEEC--------SSHHHHHH------HCSEEEECCSS
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeec--------CCHHHHHh------cCCEEEEeCCC
Confidence            58899999999999988888898 89999999998887777664211        22222232      36899998876


Q ss_pred             hHHHHHHHH
Q 043260          279 ASLISEALE  287 (332)
Q Consensus       279 ~~~~~~~~~  287 (332)
                      +..+...+.
T Consensus        67 ~~~~~~v~~   75 (296)
T 2gf2_A           67 SINAIEAYS   75 (296)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            555555554

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.10  E-value=0.054  Score=47.38  Aligned_cols=36  Identities=22%  Similarity=0.295  Sum_probs=31.5

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .+.+|+|+|+|++|..++..+...|.+++.++|.+.
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            357899999999999999999999998999987653

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.09  E-value=0.045  Score=46.50  Aligned_cols=75  Identities=12%  Similarity=0.025  Sum_probs=54.1

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      +|+|+|+|.+|..+++.+...|. +|+++++++++.+.+. +.|...+. .+.   .+ .+.+.+. +-.++|+||-+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~~i~-gd~---~~-~~~l~~a-~i~~ad~vi~~~~   74 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKATIIH-GDG---SH-KEILRDA-EVSKNDVVVILTP   74 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSEEEE-SCT---TS-HHHHHHH-TCCTTCEEEECCS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCeEEE-cCC---CC-HHHHHhc-CcccCCEEEEecC
Confidence            58999999999999999999998 9999999999887654 45654332 222   11 1223332 2337999999999


Q ss_pred             ChH
Q 043260          278 VAS  280 (332)
Q Consensus       278 ~~~  280 (332)
                      +..
T Consensus        75 ~d~   77 (218)
T 3l4b_C           75 RDE   77 (218)
T ss_dssp             CHH
T ss_pred             CcH
Confidence            853

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.09  E-value=0.045  Score=49.45  Aligned_cols=69  Identities=17%  Similarity=0.292  Sum_probs=49.8

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC--cchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN--PCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~--~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .+|.|+|.|.+|...++.+...|..+|++.+++  +++.+.+++.|....        .+..+.+.      ..|+||.+
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~--------~~~~e~~~------~aDvVi~~   90 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCK--------ASVAEVAG------ECDVIFSL   90 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEEC--------SCHHHHHH------HCSEEEEC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEe--------CCHHHHHh------cCCEEEEe
Confidence            579999999999999998888897689999996  577777777775321        22222222      36777777


Q ss_pred             CCChH
Q 043260          276 TGVAS  280 (332)
Q Consensus       276 ~g~~~  280 (332)
                      +....
T Consensus        91 vp~~~   95 (312)
T 3qsg_A           91 VTAQA   95 (312)
T ss_dssp             SCTTT
T ss_pred             cCchh
Confidence            77643

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.07  E-value=0.021  Score=51.55  Aligned_cols=77  Identities=16%  Similarity=0.200  Sum_probs=50.0

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH--HHHHHcCC--C-eeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK--DKGEAFGM--T-DFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~--~~~~~lga--~-~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      +++|||+|+ |.+|..+++.+...|. +|++++++.++.  +.+++++.  . .++..+-.+.+++.+.+...    ++|
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----~~d   77 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKV----QPD   77 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHH----CCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhc----CCC
Confidence            578999998 9999999998888998 999999887653  23444431  1 22211110122333333332    579


Q ss_pred             EEEEcCCC
Q 043260          271 YGFECTGV  278 (332)
Q Consensus       271 ~vid~~g~  278 (332)
                      +||++++.
T Consensus        78 ~vih~A~~   85 (345)
T 2z1m_A           78 EVYNLAAQ   85 (345)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999874

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.07  E-value=0.017  Score=51.78  Aligned_cols=86  Identities=15%  Similarity=0.085  Sum_probs=58.5

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      .+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...        .+..+    ..  . .|+||.++.
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~----~~--~-aDvvi~~vp   79 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEAGATLA--------DSVAD----VA--A-ADLIHITVL   79 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHTTCEEC--------SSHHH----HT--T-SSEEEECCS
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCEEc--------CCHHH----HH--h-CCEEEEECC
Confidence            579999999999999998888998 89999999999888877775321        12222    21  2 688888888


Q ss_pred             ChHHHHHHH----HHhccCCcEEEEEc
Q 043260          278 VASLISEAL----EATKLGKGKVMAIG  300 (332)
Q Consensus       278 ~~~~~~~~~----~~l~~~~G~~v~~G  300 (332)
                      ++..+...+    ..++++ ..++..+
T Consensus        80 ~~~~~~~v~~~l~~~l~~g-~ivv~~s  105 (296)
T 3qha_A           80 DDAQVREVVGELAGHAKPG-TVIAIHS  105 (296)
T ss_dssp             SHHHHHHHHHHHHTTCCTT-CEEEECS
T ss_pred             ChHHHHHHHHHHHHhcCCC-CEEEEeC
Confidence            654443333    334443 4444444

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.06  E-value=0.022  Score=52.29  Aligned_cols=97  Identities=14%  Similarity=0.112  Sum_probs=59.9

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHH-cCCCeee-CCC-CCCCchHHHHHHHhcCCCCccE
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEA-FGMTDFI-NPD-DEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~-lga~~v~-~~~-~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      +++|||+|+ |.+|..+++.+... |. +|++++++.++.+.+.+ .+...+. |.. +   .+   .+.+...  ++|+
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d---~~---~~~~~~~--~~d~   94 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDLVKHERMHFFEGDITIN---KE---WVEYHVK--KCDV   94 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGGGGSTTEEEEECCTTTC---HH---HHHHHHH--HCSE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhhccCCCeEEEeCccCCC---HH---HHHHHhc--cCCE
Confidence            578999998 99999999988887 88 99999998876544333 2222221 222 2   22   2222221  6999


Q ss_pred             EEEcCCChHH-----------------HHHHHHHhccCCcEEEEEcCC
Q 043260          272 GFECTGVASL-----------------ISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       272 vid~~g~~~~-----------------~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ||.+++....                 ...+++.+...+.++|.+++.
T Consensus        95 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~  142 (372)
T 3slg_A           95 ILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS  142 (372)
T ss_dssp             EEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCG
T ss_pred             EEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcH
Confidence            9998774210                 022344444332688888764

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.06  E-value=0.011  Score=52.46  Aligned_cols=80  Identities=18%  Similarity=0.256  Sum_probs=52.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-H---HcCCCe-ee--CCCCCCCchHHHHHHHhcC-C
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-E---AFGMTD-FI--NPDDEPNKSISELVKEMTH-G  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~---~lga~~-v~--~~~~~~~~~~~~~~~~~~~-~  266 (332)
                      .++++||+|+ |++|..+++.+...|. +|+++++++++.+.+ +   +.+... .+  |..+  .+++.+.+.+... -
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK--KEEISEVINKILTEH  119 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCC--HHHHHHHHHHHHHhc
Confidence            4678999998 9999999999888898 899998887765533 2   234432 22  3332  2333333332211 1


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      .++|++|+++|.
T Consensus       120 ~~id~li~~Ag~  131 (285)
T 2c07_A          120 KNVDILVNNAGI  131 (285)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            258999999874

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.05  E-value=0.012  Score=52.70  Aligned_cols=95  Identities=23%  Similarity=0.240  Sum_probs=64.9

Q ss_pred             hcccchhhhHHHHHHhhCC-CCCCEEEEECCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          176 FLSCGYSSGFGAAWKEFKV-EKGSSVAVFGLG-AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       176 ~l~~~~~ta~~al~~~~~~-~~g~~vlV~G~g-~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      .++|+.......+ +.... -.|.+++|+|.| .+|.-+++++...|+ +|+++.+..                      
T Consensus       144 ~~PcTp~gi~~ll-~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t----------------------  199 (301)
T 1a4i_A          144 FIPCTPKGCLELI-KETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKT----------------------  199 (301)
T ss_dssp             CCCHHHHHHHHHH-HTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC----------------------
T ss_pred             ccCchHHHHHHHH-HHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECCc----------------------
Confidence            3444433333333 33333 478999999997 689999999999998 898885331                      


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .++.+.+      +.+|+||.++|.+..+.  -++++++ ..++.+|...
T Consensus       200 ~~L~~~~------~~ADIVI~Avg~p~~I~--~~~vk~G-avVIDVgi~~  240 (301)
T 1a4i_A          200 AHLDEEV------NKGDILVVATGQPEMVK--GEWIKPG-AIVIDCGINY  240 (301)
T ss_dssp             SSHHHHH------TTCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCBC
T ss_pred             ccHHHHh------ccCCEEEECCCCcccCC--HHHcCCC-cEEEEccCCC
Confidence            3333333      25899999999874433  2347887 9999999864

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=96.05  E-value=0.025  Score=54.65  Aligned_cols=82  Identities=26%  Similarity=0.359  Sum_probs=54.7

Q ss_pred             CCC--CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcc---h----HHHHHHcCCCeee---CCCCCCCchHHHHHH
Q 043260          195 EKG--SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPC---R----KDKGEAFGMTDFI---NPDDEPNKSISELVK  261 (332)
Q Consensus       195 ~~g--~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~---~----~~~~~~lga~~v~---~~~~~~~~~~~~~~~  261 (332)
                      +++  +++||+|+ |++|..+++.+...|.++|+++.++..   +    .+.+++.|....+   |..+  .+++.+.+.
T Consensus       235 ~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd--~~~v~~~~~  312 (496)
T 3mje_A          235 RPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAAD--REALAALLA  312 (496)
T ss_dssp             CCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHH
Confidence            445  89999988 999999999888899878888888632   1    1234556764322   2222  344444454


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +.....+.|.||++.|.
T Consensus       313 ~i~~~g~ld~vVh~AGv  329 (496)
T 3mje_A          313 ELPEDAPLTAVFHSAGV  329 (496)
T ss_dssp             TCCTTSCEEEEEECCCC
T ss_pred             HHHHhCCCeEEEECCcc
Confidence            44333368999999884

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.05  E-value=0.033  Score=46.78  Aligned_cols=96  Identities=9%  Similarity=-0.001  Sum_probs=62.0

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-CC---------------C--eeeCCCCC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-GM---------------T--DFINPDDE  251 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-ga---------------~--~v~~~~~~  251 (332)
                      ....+.++.+||.+|+|. |..+..+++. |. +|+++|.+++-++.+++. +.               .  .++..+. 
T Consensus        16 ~~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~-   91 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF-   91 (203)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC-
T ss_pred             HhcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc-
Confidence            444677899999999976 7777777775 88 999999999988877653 21               1  1221111 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCC-----h---HHHHHHHHHhccCCcEEE
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGV-----A---SLISEALEATKLGKGKVM  297 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~-----~---~~~~~~~~~l~~~~G~~v  297 (332)
                      ....+.       +...||+|++...-     .   ..+..+.+.|+|+ |+++
T Consensus        92 ~~l~~~-------~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg-G~~~  137 (203)
T 1pjz_A           92 FALTAR-------DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGL  137 (203)
T ss_dssp             SSSTHH-------HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEE
T ss_pred             ccCCcc-------cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC-cEEE
Confidence            001111       00269999974321     1   2467889999998 9833

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.04  E-value=0.019  Score=51.63  Aligned_cols=70  Identities=13%  Similarity=0.036  Sum_probs=50.9

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-------CCCeeeCCCCCCCchHHHHHHHhcCCC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-------GMTDFINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-------ga~~v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      ...++|.|+|+|.+|...++.+. .|. +|++.++++++++.+.+.       ++...-+.            .+   -.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~------------~~---~~   72 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQIPEELLSKIEFTTTL------------EK---VK   72 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHHSCGGGGGGEEEESSC------------TT---GG
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCH------------HH---Hc
Confidence            45688999999999998888888 999 999999999998877665       22111111            01   12


Q ss_pred             CccEEEEcCCChHH
Q 043260          268 GVDYGFECTGVASL  281 (332)
Q Consensus       268 g~d~vid~~g~~~~  281 (332)
                      ++|+||+++.....
T Consensus        73 ~aDlVieavpe~~~   86 (293)
T 1zej_A           73 DCDIVMEAVFEDLN   86 (293)
T ss_dssp             GCSEEEECCCSCHH
T ss_pred             CCCEEEEcCcCCHH
Confidence            68999999998643

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.04  E-value=0.029  Score=52.78  Aligned_cols=111  Identities=17%  Similarity=0.161  Sum_probs=72.0

Q ss_pred             hHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-----------HcCC--Ce--eeCC
Q 043260          184 GFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-----------AFGM--TD--FINP  248 (332)
Q Consensus       184 a~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-----------~lga--~~--v~~~  248 (332)
                      .+..+.+..+++++++||=+|+|. |..++++++..|+.+|++++.+++-.+.++           .+|.  +.  ++..
T Consensus       161 ~i~~il~~l~l~~gd~VLDLGCGt-G~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G  239 (438)
T 3uwp_A          161 LVAQMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  239 (438)
T ss_dssp             HHHHHHHHHCCCTTCEEEEESCTT-SHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence            344455778899999999999976 888888898889867999999986554443           2343  22  2322


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCC--Ch---HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTG--VA---SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g--~~---~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +-   .+..  ..+..+  .+|+|+-+.-  .+   ..+...++.|++| |+++..-...
T Consensus       240 D~---~~lp--~~d~~~--~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPG-GrIVssE~f~  291 (438)
T 3uwp_A          240 DF---LSEE--WRERIA--NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSKPFA  291 (438)
T ss_dssp             CT---TSHH--HHHHHH--TCSEEEECCTTCCHHHHHHHHHHHTTSCTT-CEEEESSCSS
T ss_pred             cc---cCCc--cccccC--CccEEEEcccccCchHHHHHHHHHHcCCCC-cEEEEeeccc
Confidence            21   1211  111111  4899985321  11   3466778889998 9999875443

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.04  E-value=0.015  Score=51.71  Aligned_cols=95  Identities=18%  Similarity=0.153  Sum_probs=64.2

Q ss_pred             cccchhhhHHHHHHhhCCCCCCEEEEECCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCch
Q 043260          177 LSCGYSSGFGAAWKEFKVEKGSSVAVFGLG-AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS  255 (332)
Q Consensus       177 l~~~~~ta~~al~~~~~~~~g~~vlV~G~g-~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~  255 (332)
                      ++|+..-++..+.+..---.|++++|+|.| .+|..+++++...|+ +|+++.+..                      .+
T Consensus       140 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t----------------------~~  196 (285)
T 3p2o_A          140 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKT----------------------KD  196 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC----------------------SC
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCc----------------------hh
Confidence            444433334334222223589999999985 589999999999999 888886432                      22


Q ss_pred             HHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       256 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +.+.+      +.+|+||.++|.+..+.  -++++++ ..++.+|...
T Consensus       197 L~~~~------~~ADIVI~Avg~p~~I~--~~~vk~G-avVIDVgi~~  235 (285)
T 3p2o_A          197 LSLYT------RQADLIIVAAGCVNLLR--SDMVKEG-VIVVDVGINR  235 (285)
T ss_dssp             HHHHH------TTCSEEEECSSCTTCBC--GGGSCTT-EEEEECCCEE
T ss_pred             HHHHh------hcCCEEEECCCCCCcCC--HHHcCCC-eEEEEeccCc
Confidence            32222      25899999999864442  3567887 8899999764

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.03  E-value=0.024  Score=48.99  Aligned_cols=104  Identities=18%  Similarity=0.178  Sum_probs=67.2

Q ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhc--
Q 043260          192 FKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMT--  264 (332)
Q Consensus       192 ~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~--  264 (332)
                      ....++++||-+|+|. |..++.+++.+. ..+|+.++.+++..+.+++    .|...-+....   .+..+.+..+.  
T Consensus        66 ~~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---gda~~~l~~l~~~  141 (237)
T 3c3y_A           66 LKLVNAKKTIEVGVFT-GYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIE---SDAMLALDNLLQG  141 (237)
T ss_dssp             HHHTTCCEEEEECCTT-SHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHHS
T ss_pred             HHhhCCCEEEEeCCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHhc
Confidence            3446778999999875 777788888763 2499999999988876654    45432111111   22233333331  


Q ss_pred             --CCCCccEEEEcCCC---hHHHHHHHHHhccCCcEEEEEc
Q 043260          265 --HGTGVDYGFECTGV---ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       265 --~~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                        ....||+||-....   ...+..+.+.|+++ |.++.-.
T Consensus       142 ~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pG-G~lv~d~  181 (237)
T 3c3y_A          142 QESEGSYDFGFVDADKPNYIKYHERLMKLVKVG-GIVAYDN  181 (237)
T ss_dssp             TTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cCCCCCcCEEEECCchHHHHHHHHHHHHhcCCC-eEEEEec
Confidence              12369999975443   24578889999998 9888753

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.03  E-value=0.018  Score=50.68  Aligned_cols=82  Identities=20%  Similarity=0.259  Sum_probs=51.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHHH----HHHcCCCe-eeCCCCCCCchHHHHHHHhcC-CC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP-CRKDK----GEAFGMTD-FINPDDEPNKSISELVKEMTH-GT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~-~~~~~----~~~lga~~-v~~~~~~~~~~~~~~~~~~~~-~~  267 (332)
                      .|+++||+|+ |++|.++++.+...|+ +|++++++. +..+.    +++.+... ++..+-.+.+++.+.+.+... ..
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  106 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG  106 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5788999998 9999999999999999 899998844 33332    23345432 222221122333333332211 12


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      ++|++|+++|.
T Consensus       107 ~id~li~nAg~  117 (271)
T 4iin_A          107 GLSYLVNNAGV  117 (271)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            69999999884

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.03  E-value=0.022  Score=49.57  Aligned_cols=99  Identities=18%  Similarity=0.208  Sum_probs=67.0

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc----CCC--eeeCCCCCCCchHHHHHHH
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF----GMT--DFINPDDEPNKSISELVKE  262 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l----ga~--~v~~~~~~~~~~~~~~~~~  262 (332)
                      .+.....++++||-+|+|. |..+..+++. +. +|+++|.+++.++.+++.    |..  .++..+.   .++     .
T Consensus        30 ~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~l-----~   98 (260)
T 1vl5_A           30 MQIAALKGNEEVLDVATGG-GHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQM-----P   98 (260)
T ss_dssp             HHHHTCCSCCEEEEETCTT-CHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CC-----C
T ss_pred             HHHhCCCCCCEEEEEeCCC-CHHHHHHHHh-CC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH---HhC-----C
Confidence            3455678999999999974 7777777765 44 999999999888776543    422  2222211   111     0


Q ss_pred             hcCCCCccEEEEcCCC------hHHHHHHHHHhccCCcEEEEEc
Q 043260          263 MTHGTGVDYGFECTGV------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                       .....||+|+....-      ...+.++.+.|+|+ |++++..
T Consensus        99 -~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~~~~  140 (260)
T 1vl5_A           99 -FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVD  140 (260)
T ss_dssp             -SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             -CCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC-CEEEEEE
Confidence             122379999986443      25688999999998 9998863

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.03  E-value=0.0073  Score=52.37  Aligned_cols=73  Identities=18%  Similarity=0.272  Sum_probs=47.6

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHH-cCCCeEEEEcCCcc-hHHHHHHcCCCeee--CCCCCCCchHHHHHHHhcCCCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARI-QGAAKIIGIDKNPC-RKDKGEAFGMTDFI--NPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~-~G~~~Vi~~~~~~~-~~~~~~~lga~~v~--~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      +++++||+|+ +++|.++++.+.. .|. +|++++++++ +.+.      ...+  |..+  .++..+.+.... ..++|
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~-~v~~~~~~~~~~~~~------~~~~~~Dv~~--~~~v~~~~~~~~-~~~id   72 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNH-TVINIDIQQSFSAEN------LKFIKADLTK--QQDITNVLDIIK-NVSFD   72 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTE-EEEEEESSCCCCCTT------EEEEECCTTC--HHHHHHHHHHTT-TCCEE
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCc-EEEEecccccccccc------ceEEecCcCC--HHHHHHHHHHHH-hCCCC
Confidence            4678999998 9999998877776 676 8998887765 2111      1222  3332  344444443333 33799


Q ss_pred             EEEEcCCC
Q 043260          271 YGFECTGV  278 (332)
Q Consensus       271 ~vid~~g~  278 (332)
                      ++|+++|.
T Consensus        73 ~lv~nAg~   80 (244)
T 4e4y_A           73 GIFLNAGI   80 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999985

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.02  E-value=0.024  Score=45.36  Aligned_cols=96  Identities=10%  Similarity=0.035  Sum_probs=59.2

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC-cchHHHHHH-c--CCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN-PCRKDKGEA-F--GMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~-~~~~~~~~~-l--ga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      .++++|+|+|.+|...++.+...|. +|++++++ +++.+.+++ +  |.. ++..+.   .+ .+.+.+. +-.++|.|
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~~-~i~gd~---~~-~~~l~~a-~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNAD-VIPGDS---ND-SSVLKKA-GIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCE-EEESCT---TS-HHHHHHH-TTTTCSEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCCe-EEEcCC---CC-HHHHHHc-ChhhCCEE
Confidence            4579999999999999999999998 89999997 455544432 2  433 332222   11 1223332 22369999


Q ss_pred             EEcCCChHH---HHHHHHHhccCCcEEEEEc
Q 043260          273 FECTGVASL---ISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       273 id~~g~~~~---~~~~~~~l~~~~G~~v~~G  300 (332)
                      +-++++...   +....+.+.+. .+++..-
T Consensus        76 i~~~~~d~~n~~~~~~a~~~~~~-~~ii~~~  105 (153)
T 1id1_A           76 LALSDNDADNAFVVLSAKDMSSD-VKTVLAV  105 (153)
T ss_dssp             EECSSCHHHHHHHHHHHHHHTSS-SCEEEEC
T ss_pred             EEecCChHHHHHHHHHHHHHCCC-CEEEEEE
Confidence            999998532   22334444444 4555543

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.02  E-value=0.0088  Score=51.69  Aligned_cols=96  Identities=20%  Similarity=0.321  Sum_probs=57.6

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      +++||+|+ |.+|..++..+...|. +|++++++.++.+.      ....|..+  .+++.+.+.++ .+ ++|+||+++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------~~~~D~~~--~~~~~~~~~~~-~~-~~d~vi~~A   70 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQADIEA------DLSTPGGR--ETAVAAVLDRC-GG-VLDGLVCCA   70 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------CTTSHHHH--HHHHHHHHHHH-TT-CCSEEEECC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChhHccc------cccCCccc--HHHHHHHHHHc-CC-CccEEEECC
Confidence            36899998 9999999999888998 99999988654321      10001100  12222223222 12 699999998


Q ss_pred             CChH------------------HHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          277 GVAS------------------LISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       277 g~~~------------------~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      |...                  .++.+.+.+... .++++.+++...
T Consensus        71 g~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~  117 (255)
T 2dkn_A           71 GVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAA  117 (255)
T ss_dssp             CCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred             CCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecccc
Confidence            7421                  122333344332 278999887543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.00  E-value=0.049  Score=46.83  Aligned_cols=115  Identities=16%  Similarity=0.108  Sum_probs=67.0

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC-RKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~-~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      -.|.+|||+|+|.+|...++.+...|+ +|++++.... .++.+.+.|.-..+...- .+.       .   -.++|+||
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~l~~~~~i~~i~~~~-~~~-------d---L~~adLVI   96 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSAEINEWEAKGQLRVKRKKV-GEE-------D---LLNVFFIV   96 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCHHHHHHHHTTSCEEECSCC-CGG-------G---SSSCSEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHcCCcEEEECCC-CHh-------H---hCCCCEEE
Confidence            357889999999999999999999999 8999876543 233333333223332111 001       1   13699999


Q ss_pred             EcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc--CcEEEEee
Q 043260          274 ECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL--GRNLKGTI  324 (332)
Q Consensus       274 d~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~--~~~i~g~~  324 (332)
                      -+++++ .++..+...++. |..+.+-... ....|-+..++.  .+.|--|.
T Consensus        97 aAT~d~-~~N~~I~~~ak~-gi~VNvvD~p-~~~~f~~Paiv~rg~l~iaIST  146 (223)
T 3dfz_A           97 VATNDQ-AVNKFVKQHIKN-DQLVNMASSF-SDGNIQIPAQFSRGRLSLAIST  146 (223)
T ss_dssp             ECCCCT-HHHHHHHHHSCT-TCEEEC------CCSEECCEEEEETTEEEEEEC
T ss_pred             ECCCCH-HHHHHHHHHHhC-CCEEEEeCCc-ccCeEEEeeEEEeCCEEEEEEC
Confidence            999996 555555555556 8777665444 233333333333  44444333

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.99  E-value=0.015  Score=53.25  Aligned_cols=46  Identities=22%  Similarity=0.367  Sum_probs=38.7

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++.++.+.+.+.|.
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  199 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQA  199 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCc
Confidence            47799999999999999999999999 89999988776665555554

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=95.99  E-value=0.03  Score=47.23  Aligned_cols=97  Identities=16%  Similarity=0.111  Sum_probs=65.9

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC--CeeeCCCCCCCchHHHHHHHhcCCC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM--TDFINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga--~~v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      +.....++.+||-+|+|. |..+..+++. +. +++++|.+++..+.+++.-.  -.++..+.   .+       +....
T Consensus        39 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~---~~-------~~~~~  105 (220)
T 3hnr_A           39 EDVVNKSFGNVLEFGVGT-GNLTNKLLLA-GR-TVYGIEPSREMRMIAKEKLPKEFSITEGDF---LS-------FEVPT  105 (220)
T ss_dssp             HHHHHTCCSEEEEECCTT-SHHHHHHHHT-TC-EEEEECSCHHHHHHHHHHSCTTCCEESCCS---SS-------CCCCS
T ss_pred             HHhhccCCCeEEEeCCCC-CHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHhCCCceEEEeCCh---hh-------cCCCC
Confidence            444556889999999865 6666666665 77 99999999998888876422  12332221   11       11114


Q ss_pred             CccEEEEcCCC-----h---HHHHHHHHHhccCCcEEEEEc
Q 043260          268 GVDYGFECTGV-----A---SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       268 g~d~vid~~g~-----~---~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      .||+|+....-     .   ..+..+.+.|+++ |.+++.-
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  145 (220)
T 3hnr_A          106 SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG-GKIVFAD  145 (220)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             CeEEEEECcchhcCChHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            79999986432     1   1678999999998 9988874

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.98  E-value=0.021  Score=51.16  Aligned_cols=96  Identities=17%  Similarity=0.190  Sum_probs=64.3

Q ss_pred             cccchhhhHHHHHHhhCCCCCCEEEEECCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCch
Q 043260          177 LSCGYSSGFGAAWKEFKVEKGSSVAVFGLG-AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS  255 (332)
Q Consensus       177 l~~~~~ta~~al~~~~~~~~g~~vlV~G~g-~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~  255 (332)
                      ++|+...++..+.+..---.|++++|+|.| .+|..+++++...|+ +|+++.+....++                    
T Consensus       145 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~~l~--------------------  203 (300)
T 4a26_A          145 TPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTSTED--------------------  203 (300)
T ss_dssp             CCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSCHHH--------------------
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCCCch--------------------
Confidence            444444444434333233589999999985 589999999999999 8999876332211                    


Q ss_pred             HHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       256 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +.+.++      .+|+||.++|.+..+..  ++++++ ..++.+|..
T Consensus       204 l~~~~~------~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~  241 (300)
T 4a26_A          204 MIDYLR------TADIVIAAMGQPGYVKG--EWIKEG-AAVVDVGTT  241 (300)
T ss_dssp             HHHHHH------TCSEEEECSCCTTCBCG--GGSCTT-CEEEECCCE
T ss_pred             hhhhhc------cCCEEEECCCCCCCCcH--HhcCCC-cEEEEEecc
Confidence            002221      48999999998644432  457887 899999965

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.98  E-value=0.016  Score=51.41  Aligned_cols=93  Identities=11%  Similarity=0.129  Sum_probs=65.7

Q ss_pred             cccchhhhHHHHHHhhCCCCCCEEEEECCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCch
Q 043260          177 LSCGYSSGFGAAWKEFKVEKGSSVAVFGLG-AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS  255 (332)
Q Consensus       177 l~~~~~ta~~al~~~~~~~~g~~vlV~G~g-~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~  255 (332)
                      +||+....+..+ +..+ -.|++++|+|.| .+|..+++++...|+ +|+++.+..                      .+
T Consensus       132 ~PcTp~gv~~lL-~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~t----------------------~~  186 (276)
T 3ngx_A          132 VPATPRAVIDIM-DYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSKT----------------------KD  186 (276)
T ss_dssp             CCHHHHHHHHHH-HHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC----------------------SC
T ss_pred             CCCcHHHHHHHH-HHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCCc----------------------cc
Confidence            444444444444 3344 789999999985 689999999999999 898886421                      33


Q ss_pred             HHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       256 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +.+.++      .+|+||.++|.+..+..  ++++++ ..++.+|...
T Consensus       187 L~~~~~------~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~~  225 (276)
T 3ngx_A          187 IGSMTR------SSKIVVVAVGRPGFLNR--EMVTPG-SVVIDVGINY  225 (276)
T ss_dssp             HHHHHH------HSSEEEECSSCTTCBCG--GGCCTT-CEEEECCCEE
T ss_pred             HHHhhc------cCCEEEECCCCCccccH--hhccCC-cEEEEeccCc
Confidence            433333      37999999998654432  457887 8999999754

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=95.98  E-value=0.031  Score=50.88  Aligned_cols=40  Identities=10%  Similarity=0.117  Sum_probs=34.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGID-KNPCRKDK  236 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~-~~~~~~~~  236 (332)
                      .++++||+|+ |++|.++++.+...|+ +|++++ +++++.+.
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~   86 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANA   86 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHH
Confidence            5688999998 9999999999999999 999999 88876653

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=95.98  E-value=0.017  Score=52.48  Aligned_cols=96  Identities=17%  Similarity=0.121  Sum_probs=64.4

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC------C--C--eeeCCCCCCCchHHHHHHHhc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG------M--T--DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg------a--~--~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      .++++||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-      .  .  .++.      .+..+.+.. .
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~------~D~~~~l~~-~  178 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC------GDGFEFLKN-H  178 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC------SCHHHHHHH-C
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEE------ChHHHHHHh-c
Confidence            4568999999865 666677777655459999999999888887631      1  1  1221      333334443 2


Q ss_pred             CCCCccEEEEcCCC----------hHHHHHHHHHhccCCcEEEEEc
Q 043260          265 HGTGVDYGFECTGV----------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       265 ~~~g~d~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                       ...||+||-....          ...+..+.+.|+++ |.++.-.
T Consensus       179 -~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg-G~lv~~~  222 (314)
T 2b2c_A          179 -KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQG  222 (314)
T ss_dssp             -TTCEEEEEECCC-------------HHHHHHHHEEEE-EEEEEEC
T ss_pred             -CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCC-eEEEEEC
Confidence             3379999965532          35678899999998 9988764

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.97  E-value=0.018  Score=53.09  Aligned_cols=45  Identities=29%  Similarity=0.474  Sum_probs=37.0

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++.++. ..+++|+
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~g~  211 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGL  211 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcchh-hHhhcCC
Confidence            57899999999999999999999999 999999876542 3345555

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.97  E-value=0.037  Score=45.28  Aligned_cols=102  Identities=14%  Similarity=0.079  Sum_probs=68.6

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc----CCC----eeeCCCCCCCchHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF----GMT----DFINPDDEPNKSISEL  259 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l----ga~----~v~~~~~~~~~~~~~~  259 (332)
                      +.+....+++++||-+|+|. |..+..+++. +. +++++|.+++..+.+++.    +..    .++..+.   .+    
T Consensus        44 l~~~~~~~~~~~vLdiG~G~-G~~~~~~~~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~----  113 (194)
T 1dus_A           44 LVENVVVDKDDDILDLGCGY-GVIGIALADE-VK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL---YE----  113 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST---TT----
T ss_pred             HHHHcccCCCCeEEEeCCCC-CHHHHHHHHc-CC-eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECch---hc----
Confidence            33555677899999999865 6667777776 66 999999999887766542    432    2222221   11    


Q ss_pred             HHHhcCCCCccEEEEcCCC-------hHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          260 VKEMTHGTGVDYGFECTGV-------ASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       260 ~~~~~~~~g~d~vid~~g~-------~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                         ......+|+|+....-       ...+..+.+.|+++ |.+++.....
T Consensus       114 ---~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~~  160 (194)
T 1dus_A          114 ---NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVVIQTK  160 (194)
T ss_dssp             ---TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEEEEST
T ss_pred             ---ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCC-CEEEEEECCC
Confidence               1113379999986541       24567888899998 9998876654

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.97  E-value=0.017  Score=50.75  Aligned_cols=96  Identities=18%  Similarity=0.212  Sum_probs=60.5

Q ss_pred             EEEEECC-ChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQ--GAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~--G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      +|||+|+ |.+|..+++.+...  |. +|+++++++++.+.+...+...+. |..+   .   +.+.+...  ++|+||.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d---~---~~~~~~~~--~~d~vi~   71 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGITVRQADYGD---E---AALTSALQ--GVEKLLL   71 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTCHHHHHTTCEEEECCTTC---H---HHHHHHTT--TCSEEEE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChHhhhhhhcCCCeEEEcCCCC---H---HHHHHHHh--CCCEEEE
Confidence            4899998 99999999888877  88 899999988776555444543332 3322   1   23444433  5899999


Q ss_pred             cCCCh-----HHHHHHHHHhccC-CcEEEEEcCCC
Q 043260          275 CTGVA-----SLISEALEATKLG-KGKVMAIGAAN  303 (332)
Q Consensus       275 ~~g~~-----~~~~~~~~~l~~~-~G~~v~~G~~~  303 (332)
                      +++..     .....+++.+... -++++.+++..
T Consensus        72 ~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~  106 (286)
T 2zcu_A           72 ISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLH  106 (286)
T ss_dssp             CC--------CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             eCCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            98742     1233444444433 15788887654

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=95.97  E-value=0.059  Score=48.48  Aligned_cols=45  Identities=22%  Similarity=0.202  Sum_probs=39.6

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT  243 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~  243 (332)
                      ++|-++|.|.+|...+.-+...|. +|++.++++++.+.+.+.|+.
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l~~~Ga~   48 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGAS   48 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHcCCE
Confidence            478999999999988888888999 999999999999988887763

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.97  E-value=0.02  Score=50.93  Aligned_cols=94  Identities=17%  Similarity=0.188  Sum_probs=65.0

Q ss_pred             cccchhhhHHHHHHhhCC-CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCc
Q 043260          177 LSCGYSSGFGAAWKEFKV-EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK  254 (332)
Q Consensus       177 l~~~~~ta~~al~~~~~~-~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~  254 (332)
                      ++|+..-++..+ +..+. -.|++++|+|. +.+|..+++++...|+ +|+++.+..                      .
T Consensus       141 ~PcTp~gv~~lL-~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~T----------------------~  196 (286)
T 4a5o_A          141 RPCTPKGIMTLL-ASTGADLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRFT----------------------R  196 (286)
T ss_dssp             CCHHHHHHHHHH-HHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTTC----------------------S
T ss_pred             CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCC----------------------c
Confidence            444444444434 33333 48999999998 5589999999999999 888875422                      2


Q ss_pred             hHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       255 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ++.+.++      .+|+||.++|.+..+.  -++++++ ..++.+|...
T Consensus       197 ~L~~~~~------~ADIVI~Avg~p~~I~--~~~vk~G-avVIDvgi~~  236 (286)
T 4a5o_A          197 DLADHVS------RADLVVVAAGKPGLVK--GEWIKEG-AIVIDVGINR  236 (286)
T ss_dssp             CHHHHHH------TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCSCS
T ss_pred             CHHHHhc------cCCEEEECCCCCCCCC--HHHcCCC-eEEEEecccc
Confidence            2333332      4899999999864443  2567887 8999999765

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=95.97  E-value=0.038  Score=49.06  Aligned_cols=97  Identities=14%  Similarity=0.148  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC---eeeCCCCCCCchHHHHHHHhcC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT---DFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      .+.++.+||-+|+|. |..+..+++..|. +|+++|.++..++.+++    .|..   .++..+.   .++      -..
T Consensus        79 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~------~~~  147 (297)
T 2o57_A           79 VLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEI------PCE  147 (297)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSC------SSC
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc---ccC------CCC
Confidence            778999999999974 7788888887788 99999999987776644    3432   2222211   110      011


Q ss_pred             CCCccEEEEcCCC------hHHHHHHHHHhccCCcEEEEEcC
Q 043260          266 GTGVDYGFECTGV------ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       266 ~~g~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      ...||+|+....-      ...+..+.+.|+|+ |++++...
T Consensus       148 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  188 (297)
T 2o57_A          148 DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP  188 (297)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCEeEEEecchhhhcCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence            2369999975432      34688999999998 99887753

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=95.97  E-value=0.015  Score=51.53  Aligned_cols=78  Identities=13%  Similarity=0.126  Sum_probs=51.9

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCC--C-eee--CCCCCCCchHHHHHHHhcCC-CCc
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGM--T-DFI--NPDDEPNKSISELVKEMTHG-TGV  269 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga--~-~v~--~~~~~~~~~~~~~~~~~~~~-~g~  269 (332)
                      +++||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +++..  . ..+  |..+  .+++.+.+.+.... .++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i   98 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAKTRVLPLTLDVRD--RAAMSAAVDNLPEEFATL   98 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHTCCGGGSSC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHhCCC
Confidence            68999998 9999999999999999 999999998876643 33322  1 222  3332  23333334332111 258


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|+++|.
T Consensus        99 D~lvnnAG~  107 (272)
T 2nwq_A           99 RGLINNAGL  107 (272)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=95.96  E-value=0.029  Score=54.05  Aligned_cols=83  Identities=19%  Similarity=0.249  Sum_probs=55.1

Q ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch---H----HHHHHcCCCe-ee--CCCCCCCchHHHHHHH
Q 043260          194 VEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR---K----DKGEAFGMTD-FI--NPDDEPNKSISELVKE  262 (332)
Q Consensus       194 ~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~---~----~~~~~lga~~-v~--~~~~~~~~~~~~~~~~  262 (332)
                      +++++++||+|+ |++|..+++.+...|.++|++++++...   .    +.+++.|... ++  |..+  .+++.+.+.+
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d--~~~v~~~~~~  300 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD--RESVRELLGG  300 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCC--HHHHHHHHHH
Confidence            567899999988 9999999988888898669999887642   1    2234556542 22  3322  2344444444


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                      .......|.||++.|.
T Consensus       301 i~~~g~ld~VIh~AG~  316 (486)
T 2fr1_A          301 IGDDVPLSAVFHAAAT  316 (486)
T ss_dssp             SCTTSCEEEEEECCCC
T ss_pred             HHhcCCCcEEEECCcc
Confidence            3222357999999884

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.96  E-value=0.019  Score=50.81  Aligned_cols=83  Identities=19%  Similarity=0.232  Sum_probs=51.5

Q ss_pred             CCCCEEEEECC-Ch--HHHHHHHHHHHcCCCeEEEEcCCc--chHHHHHH-cCCCeeeCCCCCCCchHHHHHHHhcC-CC
Q 043260          195 EKGSSVAVFGL-GA--VGLGVMDRARIQGAAKIIGIDKNP--CRKDKGEA-FGMTDFINPDDEPNKSISELVKEMTH-GT  267 (332)
Q Consensus       195 ~~g~~vlV~G~-g~--vG~~~~~la~~~G~~~Vi~~~~~~--~~~~~~~~-lga~~v~~~~~~~~~~~~~~~~~~~~-~~  267 (332)
                      -.++++||+|+ |.  +|.++++.+...|+ +|++++++.  ++.+.+.+ .+....+..+-.+.+++.+.+.+... -.
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWD  102 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcC
Confidence            45789999985 44  99999999999999 899999887  44444433 33323332221122333333332211 12


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      .+|++|+++|.
T Consensus       103 ~id~li~nAg~  113 (280)
T 3nrc_A          103 GLDAIVHSIAF  113 (280)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            58999999874

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.94  E-value=0.02  Score=49.16  Aligned_cols=73  Identities=19%  Similarity=0.129  Sum_probs=49.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHHHHHHhcCCCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQ--GAAKIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~--G~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      .+++|||+|+ |.+|..+++.+...  |. +|+++++++++.+.+ ..+...+ .|..+   .   +.+.+...  ++|+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~~~~~D~~d---~---~~~~~~~~--~~d~   72 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEADVFIGDITD---A---DSINPAFQ--GIDA   72 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTTEEECCTTS---H---HHHHHHHT--TCSE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCeeEEEecCCC---H---HHHHHHHc--CCCE
Confidence            4678999998 99999999999888  77 999999987665432 1122222 23222   1   23333333  5899


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      ||++++.
T Consensus        73 vi~~a~~   79 (253)
T 1xq6_A           73 LVILTSA   79 (253)
T ss_dssp             EEECCCC
T ss_pred             EEEeccc
Confidence            9998873

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=95.94  E-value=0.024  Score=50.66  Aligned_cols=45  Identities=18%  Similarity=0.237  Sum_probs=37.4

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF  240 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l  240 (332)
                      .++++||-+|+|. |..+..+++..+..+|+++|.++.-++.+++.
T Consensus        45 ~~~~~VLDiGCG~-G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           45 FRGRDVLDLGCNV-GHLTLSIACKWGPSRMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             TTTSEEEEESCTT-CHHHHHHHHHTCCSEEEEEESCHHHHHHHHHT
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence            4688999999976 78888899987655999999999888777653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=95.94  E-value=0.021  Score=49.88  Aligned_cols=81  Identities=19%  Similarity=0.238  Sum_probs=53.1

Q ss_pred             CCCCCCEEEEECC---ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCeee--CCCCCCCchHHHHHH--
Q 043260          193 KVEKGSSVAVFGL---GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDFI--NPDDEPNKSISELVK--  261 (332)
Q Consensus       193 ~~~~g~~vlV~G~---g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v~--~~~~~~~~~~~~~~~--  261 (332)
                      ...+++++||+|+   +++|..+++.+...|+ +|++++++++..+.+    ++.+...++  |..+  .+++.+.+.  
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~   86 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVAD--DAQIDALFASL   86 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCC--HHHHHHHHHHH
Confidence            3457889999974   6999999999999999 999998886554433    333432333  3322  233333333  


Q ss_pred             -HhcCCCCccEEEEcCCC
Q 043260          262 -EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 -~~~~~~g~d~vid~~g~  278 (332)
                       +.. + ++|++|+++|.
T Consensus        87 ~~~~-g-~id~lv~nAg~  102 (271)
T 3ek2_A           87 KTHW-D-SLDGLVHSIGF  102 (271)
T ss_dssp             HHHC-S-CEEEEEECCCC
T ss_pred             HHHc-C-CCCEEEECCcc
Confidence             222 2 68999999873

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.93  E-value=0.012  Score=51.68  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=47.4

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC-eee--CCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT-DFI--NPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~-~v~--~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      +++|||+|+ |.+|..+++.+...|. +|+++++++.+.+     +.. .++  |..+   .   +.+.++..  ++|+|
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~~~~~-----~~~~~~~~~Dl~d---~---~~~~~~~~--~~D~v   68 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPLDPA-----GPNEECVQCDLAD---A---NAVNAMVA--GCDGI   68 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSCCCCC-----CTTEEEEECCTTC---H---HHHHHHHT--TCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCCcccc-----CCCCEEEEcCCCC---H---HHHHHHHc--CCCEE
Confidence            467999998 9999999999988998 9999999876543     222 222  2222   2   23333333  68999


Q ss_pred             EEcCCC
Q 043260          273 FECTGV  278 (332)
Q Consensus       273 id~~g~  278 (332)
                      |++.|.
T Consensus        69 i~~Ag~   74 (267)
T 3rft_A           69 VHLGGI   74 (267)
T ss_dssp             EECCSC
T ss_pred             EECCCC
Confidence            999874

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=95.93  E-value=0.021  Score=55.64  Aligned_cols=84  Identities=12%  Similarity=0.110  Sum_probs=54.5

Q ss_pred             CCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEE-cCCc-------------ch----HHHHHHcCCCeee---CCCC
Q 043260          193 KVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGI-DKNP-------------CR----KDKGEAFGMTDFI---NPDD  250 (332)
Q Consensus       193 ~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~-~~~~-------------~~----~~~~~~lga~~v~---~~~~  250 (332)
                      .+++++++||+|+ |++|..+++.+...|.+.|+++ +++.             ++    .+.+++.|....+   |..+
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd  326 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD  326 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC
Confidence            3567899999988 9999999998888899668887 7773             22    2234455754322   2222


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCC
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~  278 (332)
                        .+++.+.+.+.......|.||++.|.
T Consensus       327 --~~~v~~~~~~i~~~g~id~vVh~AGv  352 (525)
T 3qp9_A          327 --AEAAARLLAGVSDAHPLSAVLHLPPT  352 (525)
T ss_dssp             --HHHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred             --HHHHHHHHHHHHhcCCCcEEEECCcC
Confidence              34444444443322368999999884

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=95.93  E-value=0.024  Score=51.42  Aligned_cols=77  Identities=22%  Similarity=0.183  Sum_probs=51.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC---------CcchHHH----HHHcCCCeeeCCCCCCCchHHHH--
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK---------NPCRKDK----GEAFGMTDFINPDDEPNKSISEL--  259 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~---------~~~~~~~----~~~lga~~v~~~~~~~~~~~~~~--  259 (332)
                      .|+++||+|+ |++|..+++.+...|+ +|+++++         +.++.+.    +++.+...+.+..+  ..+..+.  
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~--~~~~~~~~~   84 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS--VEAGEKLVK   84 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC--GGGHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCC--HHHHHHHHH
Confidence            5788999998 9999999999999999 9999754         3444432    23345444445444  2333333  


Q ss_pred             -HHHhcCCCCccEEEEcCC
Q 043260          260 -VKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       260 -~~~~~~~~g~d~vid~~g  277 (332)
                       +.+..+  ++|++|++.|
T Consensus        85 ~~~~~~g--~iD~lVnnAG  101 (319)
T 1gz6_A           85 TALDTFG--RIDVVVNNAG  101 (319)
T ss_dssp             HHHHHTS--CCCEEEECCC
T ss_pred             HHHHHcC--CCCEEEECCC
Confidence             333332  5899999988

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=95.93  E-value=0.0067  Score=51.95  Aligned_cols=98  Identities=16%  Similarity=0.106  Sum_probs=68.4

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC-CeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM-TDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga-~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      +.++++||-+|+|. |..+..+++. |. +|+.+|.++..++.+++... -.++..+.   .+   .+. ......||+|
T Consensus        46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~---~~~-~~~~~~fD~v  115 (226)
T 3m33_A           46 LTPQTRVLEAGCGH-GPDAARFGPQ-AA-RWAAYDFSPELLKLARANAPHADVYEWNG---KG---ELP-AGLGAPFGLI  115 (226)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHCTTSEEEECCS---CS---SCC-TTCCCCEEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHc-CC-EEEEEECCHHHHHHHHHhCCCceEEEcch---hh---ccC-CcCCCCEEEE
Confidence            47889999999976 6777777776 76 99999999998888877532 22332221   00   000 1102379999


Q ss_pred             EEcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          273 FECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       273 id~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +....-...+..+.+.|+++ |+++..+..
T Consensus       116 ~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  144 (226)
T 3m33_A          116 VSRRGPTSVILRLPELAAPD-AHFLYVGPR  144 (226)
T ss_dssp             EEESCCSGGGGGHHHHEEEE-EEEEEEESS
T ss_pred             EeCCCHHHHHHHHHHHcCCC-cEEEEeCCc
Confidence            99866666789999999998 999955543

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=95.92  E-value=0.02  Score=49.70  Aligned_cols=40  Identities=20%  Similarity=0.217  Sum_probs=32.2

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHH
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGI-DKNPCRKD  235 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~-~~~~~~~~  235 (332)
                      -.++++||+|+ +++|.++++.+...|+ +|+++ .++.++.+
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~   46 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAE   46 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHH
Confidence            35789999998 9999999999999999 88775 55555543

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=95.91  E-value=0.022  Score=49.66  Aligned_cols=79  Identities=8%  Similarity=0.128  Sum_probs=51.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHH---cCCCeEEEEcCCcchHHHH-HHc-----CCC-ee--eCCCCCCCchHHHHHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARI---QGAAKIIGIDKNPCRKDKG-EAF-----GMT-DF--INPDDEPNKSISELVKE  262 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~---~G~~~Vi~~~~~~~~~~~~-~~l-----ga~-~v--~~~~~~~~~~~~~~~~~  262 (332)
                      .++++||+|+ |++|.++++.+..   .|+ +|+++++++++.+.+ +++     +.. ..  .|..+  .+++.+.+.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~   81 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT--EAGVQRLLSA   81 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS--HHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCC--HHHHHHHHHH
Confidence            4678899998 9999998888887   798 999999998776543 222     332 12  23332  2334444443


Q ss_pred             hcC---CCCcc--EEEEcCC
Q 043260          263 MTH---GTGVD--YGFECTG  277 (332)
Q Consensus       263 ~~~---~~g~d--~vid~~g  277 (332)
                      ...   -..+|  ++|+++|
T Consensus        82 ~~~~~~~g~~d~~~lvnnAg  101 (259)
T 1oaa_A           82 VRELPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCC
T ss_pred             HHhccccccCCccEEEECCc
Confidence            321   12577  9999877

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=95.90  E-value=0.013  Score=52.92  Aligned_cols=99  Identities=14%  Similarity=0.029  Sum_probs=65.9

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC--------CC--eeeCCCCCCCchHHHHHHHh
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG--------MT--DFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg--------a~--~v~~~~~~~~~~~~~~~~~~  263 (332)
                      ..++++||++|+|. |..+..+++..+..+|++++.+++-.+.+++.-        ..  .++.      .+..+.+.+.
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~~~~~  165 (304)
T 3bwc_A           93 HPKPERVLIIGGGD-GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV------GDGLAFVRQT  165 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHSS
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE------CcHHHHHHhc
Confidence            35678999999865 666677777655559999999998888776532        11  2222      2233333321


Q ss_pred             cCCCCccEEEEcCCC----------hHHHHHHHHHhccCCcEEEEEcC
Q 043260          264 THGTGVDYGFECTGV----------ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       264 ~~~~g~d~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      . ...||+|+.....          ...+..+.+.|+++ |.+++...
T Consensus       166 ~-~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~~  211 (304)
T 3bwc_A          166 P-DNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD-GICCNQGE  211 (304)
T ss_dssp             C-TTCEEEEEEECC---------CCHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             c-CCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence            2 3379999975432          35678999999998 99988643

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=95.90  E-value=0.063  Score=48.60  Aligned_cols=106  Identities=18%  Similarity=0.166  Sum_probs=72.0

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHH-cCCCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARI-QGAAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~-~G~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      +..++++|+|+|.+|...++.+.. .+.++|.+.+++ +..+++++    +|......  +     ..+.++      ++
T Consensus       119 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~--~-----~~eav~------~a  184 (313)
T 3hdj_A          119 PRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA--A-----PADIAA------QA  184 (313)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC--C-----HHHHHH------HC
T ss_pred             CCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe--C-----HHHHHh------hC
Confidence            456789999999999988877665 567799999999 55555544    46543222  2     333332      48


Q ss_pred             cEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc
Q 043260          270 DYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL  316 (332)
Q Consensus       270 d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~  316 (332)
                      |+|+.|++....+-. .+.++++ -.++.+|......-+++...+..
T Consensus       185 DIVi~aT~s~~pvl~-~~~l~~G-~~V~~vGs~~p~~~El~~~~~~~  229 (313)
T 3hdj_A          185 DIVVTATRSTTPLFA-GQALRAG-AFVGAIGSSLPHTRELDDEALRR  229 (313)
T ss_dssp             SEEEECCCCSSCSSC-GGGCCTT-CEEEECCCSSTTCCCCCHHHHHH
T ss_pred             CEEEEccCCCCcccC-HHHcCCC-cEEEECCCCCCchhhcCHHHHhc
Confidence            999999987532211 3568887 89999998765456777665444

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=95.90  E-value=0.021  Score=51.95  Aligned_cols=77  Identities=8%  Similarity=0.092  Sum_probs=49.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC-----cchHHHH----HHcCCCe-ee--CCCCCCCchHHHHHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN-----PCRKDKG----EAFGMTD-FI--NPDDEPNKSISELVKE  262 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~-----~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~~~  262 (332)
                      .++++||+|+ |++|.++++.+...|+ +|+++.++     +++.+.+    ++.+.+. .+  |..+  .+++.+.+.+
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd--~~~v~~~~~~   80 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQS--QVSVDRAIDQ   80 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHH
Confidence            3578999998 9999999999999999 89987765     3333322    2334332 22  3322  2334333332


Q ss_pred             ---hcCCCCccEEEEcCC
Q 043260          263 ---MTHGTGVDYGFECTG  277 (332)
Q Consensus       263 ---~~~~~g~d~vid~~g  277 (332)
                         ..+  +.|++|+++|
T Consensus        81 ~~~~~g--~iD~lVnnAG   96 (324)
T 3u9l_A           81 IIGEDG--RIDVLIHNAG   96 (324)
T ss_dssp             HHHHHS--CCSEEEECCC
T ss_pred             HHHHcC--CCCEEEECCC
Confidence               222  5999999998

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.89  E-value=0.046  Score=48.68  Aligned_cols=75  Identities=16%  Similarity=0.244  Sum_probs=51.6

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc----CCCe-eeCCCCCCCchHHHHHHHhcCCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF----GMTD-FINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l----ga~~-v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      -+|+++||+|+ |++|.+++..+...|+ +|++++++.++.+.+ +++    +... ..+..+   .   +.+.+...  
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~---~---~~~~~~~~--  187 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD---D---ASRAEAVK--  187 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS---H---HHHHHHTT--
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCC---H---HHHHHHHH--
Confidence            46889999995 9999999999999999 799999988776533 332    3221 223322   1   12333332  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      .+|++|+++|.
T Consensus       188 ~~DvlVn~ag~  198 (287)
T 1lu9_A          188 GAHFVFTAGAI  198 (287)
T ss_dssp             TCSEEEECCCT
T ss_pred             hCCEEEECCCc
Confidence            38999999974

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.89  E-value=0.022  Score=50.44  Aligned_cols=85  Identities=14%  Similarity=0.075  Sum_probs=56.7

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~  278 (332)
                      +|.|+|+|.+|...+..+.. |. +|+++++++++.+.+.+.|.... +  .   .+       ..  ..+|+||.++..
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~~~~~~~~~~g~~~~-~--~---~~-------~~--~~~D~vi~~v~~   65 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTFEKALRHQEEFGSEA-V--P---LE-------RV--AEARVIFTCLPT   65 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TS-CEEEECSSTHHHHHHHHHHCCEE-C--C---GG-------GG--GGCSEEEECCSS
T ss_pred             eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHCCCccc-C--H---HH-------HH--hCCCEEEEeCCC
Confidence            68899999999998887777 98 89999999988877766564322 1  1   11       11  147888888887


Q ss_pred             hHHHHHHHH----HhccCCcEEEEEcC
Q 043260          279 ASLISEALE----ATKLGKGKVMAIGA  301 (332)
Q Consensus       279 ~~~~~~~~~----~l~~~~G~~v~~G~  301 (332)
                      +..+...++    .++++ ..++.++.
T Consensus        66 ~~~~~~v~~~l~~~l~~~-~~vv~~s~   91 (289)
T 2cvz_A           66 TREVYEVAEALYPYLREG-TYWVDATS   91 (289)
T ss_dssp             HHHHHHHHHHHTTTCCTT-EEEEECSC
T ss_pred             hHHHHHHHHHHHhhCCCC-CEEEECCC
Confidence            644554443    33443 45555543

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=95.89  E-value=0.075  Score=52.62  Aligned_cols=105  Identities=19%  Similarity=0.173  Sum_probs=64.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc-ch-HHHHHHcCCCeeeCCCCC--CCchHHHHHHHhcCCCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP-CR-KDKGEAFGMTDFINPDDE--PNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~-~~-~~~~~~lga~~v~~~~~~--~~~~~~~~~~~~~~~~g~d  270 (332)
                      .|+++||+|+ +++|.+.++.+...|+ +|++.++.. ++ .+.+++.|...+....+.  ..+.+.+.+.+..+  +.|
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G--~iD  397 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGA-KVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYG--TID  397 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHS--CCC
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCC-EEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcC--CCC
Confidence            4678889998 9999999999999999 899987532 22 233444565433322220  01223333333333  599


Q ss_pred             EEEEcCCCh-------------------------HHHHHHHHHhccC-CcEEEEEcCCC
Q 043260          271 YGFECTGVA-------------------------SLISEALEATKLG-KGKVMAIGAAN  303 (332)
Q Consensus       271 ~vid~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~G~~~  303 (332)
                      ++|++.|..                         ...+.++..+.+. +|++|.+++..
T Consensus       398 iLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~a  456 (604)
T 2et6_A          398 ILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTS  456 (604)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChh
Confidence            999998841                         1234455555332 38999998754

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=95.88  E-value=0.018  Score=49.45  Aligned_cols=77  Identities=17%  Similarity=0.176  Sum_probs=50.1

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HHcCCCe-e-e--CCCCCCCchHHHHHH---Hh
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGI-DKNPCRKDKG----EAFGMTD-F-I--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~-~~~~~~~~~~----~~lga~~-v-~--~~~~~~~~~~~~~~~---~~  263 (332)
                      ++++||+|+ |++|..+++.+...|+ +|+++ +++.++.+.+    ++.+... . +  |..+  .+++.+.+.   +.
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   77 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE--AEAATALVHQAAEV   77 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCC--HHHHHHHHHHHHHh
Confidence            357899998 9999999999988998 88887 7887765533    2234332 2 2  3322  233333322   22


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus        78 ~~--~~d~li~~Ag~   90 (245)
T 2ph3_A           78 LG--GLDTLVNNAGI   90 (245)
T ss_dssp             HT--CCCEEEECCCC
T ss_pred             cC--CCCEEEECCCC
Confidence            22  58999999873

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.88  E-value=0.02  Score=49.89  Aligned_cols=80  Identities=15%  Similarity=0.224  Sum_probs=50.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHH----HcCCCe-ee--CCCCCCCchHHHHHHHhcC-
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGE----AFGMTD-FI--NPDDEPNKSISELVKEMTH-  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~----~lga~~-v~--~~~~~~~~~~~~~~~~~~~-  265 (332)
                      .++++||+|+ |++|..+++.+...|+ +|++++++.++.+ .++    +.+... .+  |..+  .+++.+.+.+... 
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   89 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN--TDIVTKTIQQIDAD   89 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCC--HHHHHHHHHHHHHh
Confidence            4678999998 9999999999999998 9999998655432 222    234332 22  3332  2333333333211 


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      -..+|++|+++|.
T Consensus        90 ~~~id~li~~Ag~  102 (265)
T 1h5q_A           90 LGPISGLIANAGV  102 (265)
T ss_dssp             SCSEEEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1258999999874

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.88  E-value=0.024  Score=49.56  Aligned_cols=78  Identities=19%  Similarity=0.328  Sum_probs=50.3

Q ss_pred             CCCEEEEECC---ChHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHH-HHcCCCeee--CCCCCCCchHHHHHH---Hh
Q 043260          196 KGSSVAVFGL---GAVGLGVMDRARIQGAAKIIGIDKNPC---RKDKG-EAFGMTDFI--NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       196 ~g~~vlV~G~---g~vG~~~~~la~~~G~~~Vi~~~~~~~---~~~~~-~~lga~~v~--~~~~~~~~~~~~~~~---~~  263 (332)
                      .++++||+|+   |++|.++++.+...|+ +|++++++++   ..+.+ .+.+....+  |..+  .+++.+.+.   +.
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQ--DEELDALFAGVKEA   83 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4688999986   6999999998888999 8999998875   22222 223432333  3332  233333332   22


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  ++|++|+++|.
T Consensus        84 ~g--~iD~lv~~Ag~   96 (261)
T 2wyu_A           84 FG--GLDYLVHAIAF   96 (261)
T ss_dssp             HS--SEEEEEECCCC
T ss_pred             cC--CCCEEEECCCC
Confidence            22  58999999873

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.86  E-value=0.024  Score=52.08  Aligned_cols=87  Identities=20%  Similarity=0.308  Sum_probs=56.0

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++..+.+...  |...+        +++.+.++      ..|+|+-+
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~--g~~~~--------~~l~ell~------~sDvV~l~  234 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHALEE--GAIYH--------DTLDSLLG------ASDIFLIA  234 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHT--TCEEC--------SSHHHHHH------TCSEEEEC
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcchhhhc--CCeEe--------CCHHHHHh------hCCEEEEe
Confidence            46899999999999999999999999 9999998865443322  33221        12222221      35777776


Q ss_pred             CCCh-H---HH-HHHHHHhccCCcEEEEEc
Q 043260          276 TGVA-S---LI-SEALEATKLGKGKVMAIG  300 (332)
Q Consensus       276 ~g~~-~---~~-~~~~~~l~~~~G~~v~~G  300 (332)
                      +... +   .+ ...++.++++ ..+|.++
T Consensus       235 ~Plt~~T~~li~~~~l~~mk~g-ailIN~a  263 (345)
T 4g2n_A          235 APGRPELKGFLDHDRIAKIPEG-AVVINIS  263 (345)
T ss_dssp             SCCCGGGTTCBCHHHHHHSCTT-EEEEECS
T ss_pred             cCCCHHHHHHhCHHHHhhCCCC-cEEEECC
Confidence            6531 1   12 3556666665 6666655

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.85  E-value=0.045  Score=50.04  Aligned_cols=87  Identities=22%  Similarity=0.166  Sum_probs=58.2

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++.++.  +++. +..+        .++.+.+.      ..|+|+.+
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~--~~~~-~~~~--------~~l~ell~------~aDvV~l~  206 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE--LEKK-GYYV--------DSLDDLYK------QADVISLH  206 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH--HHHT-TCBC--------SCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh--HHhh-Ceec--------CCHHHHHh------hCCEEEEc
Confidence            46899999999999999999999999 999999887665  2332 2111        12222221      36788877


Q ss_pred             CCChH----HH-HHHHHHhccCCcEEEEEcC
Q 043260          276 TGVAS----LI-SEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       276 ~g~~~----~~-~~~~~~l~~~~G~~v~~G~  301 (332)
                      +....    .+ ...++.++++ +.++.++.
T Consensus       207 ~p~~~~t~~li~~~~l~~mk~g-a~lIn~ar  236 (333)
T 1j4a_A          207 VPDVPANVHMINDESIAKMKQD-VVIVNVSR  236 (333)
T ss_dssp             SCCCGGGTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred             CCCcHHHHHHHhHHHHhhCCCC-cEEEECCC
Confidence            76421    12 3456677776 77776664

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.84  E-value=0.03  Score=53.39  Aligned_cols=93  Identities=15%  Similarity=0.040  Sum_probs=56.5

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCeee--CCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTDFI--NPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~v~--~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      +++|+|+|+|.+|..+++.+...|. +|++++++.++.+.+. +++....+  +..+     . +.+.+...  ++|+|+
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d-----~-~~l~~~l~--~~DvVI   73 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVND-----D-AALDAEVA--KHDLVI   73 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCTTC-----H-HHHHHHHT--TSSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeecCC-----H-HHHHHHHc--CCcEEE
Confidence            5789999999999999988888897 8999999887765432 33321222  2222     1 12333322  699999


Q ss_pred             EcCCChHHHHHHHHHhccCCcEEEEE
Q 043260          274 ECTGVASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       274 d~~g~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      ++++..........++..+ ..++..
T Consensus        74 n~a~~~~~~~i~~a~l~~g-~~vvd~   98 (450)
T 1ff9_A           74 SLIPYTFHATVIKSAIRQK-KHVVTT   98 (450)
T ss_dssp             ECCC--CHHHHHHHHHHHT-CEEEES
T ss_pred             ECCccccchHHHHHHHhCC-CeEEEe
Confidence            9998632222334445554 444433

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=95.83  E-value=0.016  Score=51.15  Aligned_cols=99  Identities=16%  Similarity=0.049  Sum_probs=64.7

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee--CCCCCCCchHHHHHHHhcCCC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI--NPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~--~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      +...+.++++||=+|+|. |..+..+++. |. +|+++|.+++-++.+++.-....+  +..+   .+.  ...... ..
T Consensus        39 ~~l~l~~g~~VLDlGcGt-G~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~---~~~--~~~~~~-~~  109 (261)
T 3iv6_A           39 FLENIVPGSTVAVIGAST-RFLIEKALER-GA-SVTVFDFSQRMCDDLAEALADRCVTIDLLD---ITA--EIPKEL-AG  109 (261)
T ss_dssp             HTTTCCTTCEEEEECTTC-HHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTSSSCCEEEECC---TTS--CCCGGG-TT
T ss_pred             HhcCCCCcCEEEEEeCcc-hHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHHHhccceeeeee---ccc--cccccc-CC
Confidence            556788999999999976 7778787764 76 999999999998888764322211  1111   000  000011 23


Q ss_pred             CccEEEEcCCC--------hHHHHHHHHHhccCCcEEEEE
Q 043260          268 GVDYGFECTGV--------ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       268 g~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      .||+|+.+..-        ...+..+.+.+ |+ |++++.
T Consensus       110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG-G~l~lS  147 (261)
T 3iv6_A          110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-GS-GTVRAS  147 (261)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred             CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC-cEEEEE
Confidence            69999986431        12567777788 98 988754

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.83  E-value=0.068  Score=49.02  Aligned_cols=98  Identities=16%  Similarity=0.176  Sum_probs=60.7

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH--HHHHHc-CCCee-eC-CCCCCCchHHHHHHHhcCCCCcc
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK--DKGEAF-GMTDF-IN-PDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~--~~~~~l-ga~~v-~~-~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      +++|||+|+ |.+|..+++.+...|. +|++++++.++.  +.+.+. +...+ .| ..+  .+    .+.+...  ++|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d--~~----~l~~~~~--~~d   75 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNN--VP----LMDTLFE--GAH   75 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSHHHHHHHTSTTEEEEESCCTTC--HH----HHHHHHT--TCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCChhhHHHHhhcCCcEEEECCccCC--HH----HHHHHHh--cCC
Confidence            567999998 9999999988888898 899999887764  233332 22222 12 222  12    2333332  589


Q ss_pred             EEEEcCCCh-----HHHHHHHHHhccCC--cEEEEEcCCC
Q 043260          271 YGFECTGVA-----SLISEALEATKLGK--GKVMAIGAAN  303 (332)
Q Consensus       271 ~vid~~g~~-----~~~~~~~~~l~~~~--G~~v~~G~~~  303 (332)
                      +||.+.+..     .....+++.+...+  +++|.+++..
T Consensus        76 ~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           76 LAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             EEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            999877642     11234445444431  5899888754

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=95.82  E-value=0.022  Score=48.98  Aligned_cols=80  Identities=14%  Similarity=0.149  Sum_probs=51.0

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCC------eEEEEcCCcchHHHHH-Hc---CCC-eee--CCCCCCCchHHHHHHH
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAA------KIIGIDKNPCRKDKGE-AF---GMT-DFI--NPDDEPNKSISELVKE  262 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~------~Vi~~~~~~~~~~~~~-~l---ga~-~v~--~~~~~~~~~~~~~~~~  262 (332)
                      ++++||+|+ |++|..+++.+...|..      +|++++++.++.+.+. ++   +.. ..+  |..+  .+++.+.+.+
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~   79 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD--MADVRRLTTH   79 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS--HHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCC--HHHHHHHHHH
Confidence            567999998 99999999888888875      7999999887765432 22   432 122  3322  2333333332


Q ss_pred             hcC-CCCccEEEEcCCC
Q 043260          263 MTH-GTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~-~~g~d~vid~~g~  278 (332)
                      ... -.++|++|+++|.
T Consensus        80 ~~~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           80 IVERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHHHTSCCSEEEECCCC
T ss_pred             HHHhCCCCCEEEEcCCc
Confidence            211 1159999999873

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=95.81  E-value=0.022  Score=55.23  Aligned_cols=79  Identities=16%  Similarity=0.274  Sum_probs=53.0

Q ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch----HH---HHHHcCCCee-e--CCCCCCCchHHHHHHH
Q 043260          194 VEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR----KD---KGEAFGMTDF-I--NPDDEPNKSISELVKE  262 (332)
Q Consensus       194 ~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~----~~---~~~~lga~~v-~--~~~~~~~~~~~~~~~~  262 (332)
                      +++++++||+|+ |++|..++..+...|.++|++++++...    .+   .+++.|.... +  |..+  .+++.+.+.+
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd--~~~v~~~~~~  333 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAE--RDALAALVTA  333 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSC--HHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCC--HHHHHHHHhc
Confidence            567899999988 9999999998888998678888887632    12   2344465422 2  3322  2333333333


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                          ..+|+||++.|.
T Consensus       334 ----~~ld~VVh~AGv  345 (511)
T 2z5l_A          334 ----YPPNAVFHTAGI  345 (511)
T ss_dssp             ----SCCSEEEECCCC
T ss_pred             ----CCCcEEEECCcc
Confidence                368999999884

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.81  E-value=0.023  Score=48.68  Aligned_cols=101  Identities=19%  Similarity=0.245  Sum_probs=61.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAA-KIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~-~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      .++++||+|+ |.+|..+++.+...|.. +|+++++++++.+....-+...+ .|..+  .+    .+.+...  ++|+|
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d--~~----~~~~~~~--~~d~v   88 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK--LD----DYASAFQ--GHDVG   88 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG--GG----GGGGGGS--SCSEE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCC--HH----HHHHHhc--CCCEE
Confidence            3678999998 99999999988888863 79999888765432211122111 12211  11    2333332  69999


Q ss_pred             EEcCCChH--------------HHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          273 FECTGVAS--------------LISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       273 id~~g~~~--------------~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      |+++|...              ....+++.+.+. .++++.+++...
T Consensus        89 i~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~  135 (242)
T 2bka_A           89 FCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGA  135 (242)
T ss_dssp             EECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             EECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcC
Confidence            99998531              112334444433 268999887654

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=95.80  E-value=0.02  Score=51.85  Aligned_cols=75  Identities=13%  Similarity=0.164  Sum_probs=45.9

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      ++|||+|+ |.+|..+++.+... |. +|++++++.++.+.+.+...-.++..+-.+..+.   +.+...  ++|+||.+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~---~~~~~~--~~d~vih~   74 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEW---IEYHVK--KCDVVLPL   74 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHH---HHHHHH--HCSEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCCcchHHHhhcCCCeEEEeccccCcHHH---HHhhcc--CCCEEEEc
Confidence            37999998 99999999988887 78 9999999876643321111112222111011222   222211  58999998


Q ss_pred             CCC
Q 043260          276 TGV  278 (332)
Q Consensus       276 ~g~  278 (332)
                      ++.
T Consensus        75 A~~   77 (345)
T 2bll_A           75 VAI   77 (345)
T ss_dssp             BCC
T ss_pred             ccc
Confidence            773

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.79  E-value=0.043  Score=50.18  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=31.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHH--cCCCeEEEEcCCcc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARI--QGAAKIIGIDKNPC  232 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~--~G~~~Vi~~~~~~~  232 (332)
                      .+++|||+|+ |.+|..+++.+..  .|. +|++++++..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~   47 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRS   47 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCc
Confidence            5689999998 9999999998888  898 9999988654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=95.79  E-value=0.038  Score=48.67  Aligned_cols=97  Identities=21%  Similarity=0.241  Sum_probs=66.5

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC-CeeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM-TDFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga-~~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      +.....++.+||-+|+|. |..+..+++ .+. +|+++|.+++-++.+++... -.++..+.   .+       +.....
T Consensus        51 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~---~~-------~~~~~~  117 (279)
T 3ccf_A           51 QLLNPQPGEFILDLGCGT-GQLTEKIAQ-SGA-EVLGTDNAATMIEKARQNYPHLHFDVADA---RN-------FRVDKP  117 (279)
T ss_dssp             HHHCCCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHCTTSCEEECCT---TT-------CCCSSC
T ss_pred             HHhCCCCCCEEEEecCCC-CHHHHHHHh-CCC-eEEEEECCHHHHHHHHhhCCCCEEEECCh---hh-------CCcCCC
Confidence            445678899999999876 777777777 676 99999999988887776421 12222211   11       111236


Q ss_pred             ccEEEEcCCC------hHHHHHHHHHhccCCcEEEEEc
Q 043260          269 VDYGFECTGV------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       269 ~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ||+|+....-      ...+..+.+.|+++ |++++.-
T Consensus       118 fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~~  154 (279)
T 3ccf_A          118 LDAVFSNAMLHWVKEPEAAIASIHQALKSG-GRFVAEF  154 (279)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cCEEEEcchhhhCcCHHHHHHHHHHhcCCC-cEEEEEe
Confidence            9999985432      24678999999998 9888753

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.78  E-value=0.017  Score=50.91  Aligned_cols=88  Identities=22%  Similarity=0.210  Sum_probs=61.3

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      .| +++|+|+|.+|.+++..+...|. +|++++++.++.+ +++++|..  +  .+         +.+.   ..+|+|+.
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~~~~~~~l~~~~~~~--~--~~---------~~~~---~~~Divi~  177 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRTPQRALALAEEFGLR--A--VP---------LEKA---REARLLVN  177 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHTCE--E--CC---------GGGG---GGCSEEEE
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccc--h--hh---------Hhhc---cCCCEEEE
Confidence            56 89999999999999999999998 8999999987754 55566753  2  11         1122   26899999


Q ss_pred             cCCChHHH---HH-HHHHhccCCcEEEEEcCC
Q 043260          275 CTGVASLI---SE-ALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       275 ~~g~~~~~---~~-~~~~l~~~~G~~v~~G~~  302 (332)
                      +++....-   .. ..+.++++ ..++.++..
T Consensus       178 ~tp~~~~~~~~~~l~~~~l~~g-~~viD~~~~  208 (263)
T 2d5c_A          178 ATRVGLEDPSASPLPAELFPEE-GAAVDLVYR  208 (263)
T ss_dssp             CSSTTTTCTTCCSSCGGGSCSS-SEEEESCCS
T ss_pred             ccCCCCCCCCCCCCCHHHcCCC-CEEEEeecC
Confidence            99875210   00 13566776 677776643

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.76  E-value=0.019  Score=48.02  Aligned_cols=98  Identities=14%  Similarity=0.178  Sum_probs=66.2

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC----eeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT----DFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~----~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      +.++++||-+|+|. |..+..+++. |..+|+++|.++...+.+++....    .++..+.   .++     .. ....|
T Consensus        40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~---~~~-----~~-~~~~f  108 (215)
T 2pxx_A           40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV---RKL-----DF-PSASF  108 (215)
T ss_dssp             CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT---TSC-----CS-CSSCE
T ss_pred             cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch---hcC-----CC-CCCcc
Confidence            47889999999976 7777777765 544899999999988888764321    2222211   111     11 22369


Q ss_pred             cEEEEcCCC---------------------hHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          270 DYGFECTGV---------------------ASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       270 d~vid~~g~---------------------~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      |+|+....-                     ...+..+.+.|+++ |++++.....
T Consensus       109 D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~~~  162 (215)
T 2pxx_A          109 DVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG-GRFISMTSAA  162 (215)
T ss_dssp             EEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE-EEEEEEESCC
T ss_pred             cEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC-CEEEEEeCCC
Confidence            999973211                     34678889999998 9999877544

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=95.76  E-value=0.028  Score=49.80  Aligned_cols=78  Identities=18%  Similarity=0.246  Sum_probs=50.1

Q ss_pred             CCCEEEEECC---ChHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHH-HHcCCCeee--CCCCCCCchHHHHHHH---h
Q 043260          196 KGSSVAVFGL---GAVGLGVMDRARIQGAAKIIGIDKNPC---RKDKG-EAFGMTDFI--NPDDEPNKSISELVKE---M  263 (332)
Q Consensus       196 ~g~~vlV~G~---g~vG~~~~~la~~~G~~~Vi~~~~~~~---~~~~~-~~lga~~v~--~~~~~~~~~~~~~~~~---~  263 (332)
                      .|+++||+|+   |++|.++++.+...|+ +|++++++++   ..+.+ .+.+....+  |..+  .+++.+.+.+   .
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   96 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSL--DEDIKNLKKFLEEN   96 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5788999986   5999999999999998 9999998875   22222 223432222  3332  2333333332   2


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      . + ++|++|+++|.
T Consensus        97 ~-g-~iD~lv~~Ag~  109 (285)
T 2p91_A           97 W-G-SLDIIVHSIAY  109 (285)
T ss_dssp             T-S-CCCEEEECCCC
T ss_pred             c-C-CCCEEEECCCC
Confidence            2 2 58999999873

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.76  E-value=0.11  Score=45.04  Aligned_cols=90  Identities=20%  Similarity=0.233  Sum_probs=59.6

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch--------------HHH-HHHcCCCeeeCCCCCCCchHHHH
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR--------------KDK-GEAFGMTDFINPDDEPNKSISEL  259 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~--------------~~~-~~~lga~~v~~~~~~~~~~~~~~  259 (332)
                      ..+.+|.|+|+|.+|.+.++.+...|. +|++.++++++              .+. +.++|....        .+..+.
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~e~   87 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHL--------AAFADV   87 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEE--------EEHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceec--------cCHHHH
Confidence            346789999999999999999999998 99999999886              222 233443222        233333


Q ss_pred             HHHhcCCCCccEEEEcCCChHHHH---HH-HHHhccCCcEEEEEcC
Q 043260          260 VKEMTHGTGVDYGFECTGVASLIS---EA-LEATKLGKGKVMAIGA  301 (332)
Q Consensus       260 ~~~~~~~~g~d~vid~~g~~~~~~---~~-~~~l~~~~G~~v~~G~  301 (332)
                      +.      ..|+||-++.......   +. ...+ ++ ..++.+++
T Consensus        88 ~~------~aDvVilavp~~~~~~~~~~i~~~~l-~g-~ivi~~s~  125 (245)
T 3dtt_A           88 AA------GAELVVNATEGASSIAALTAAGAENL-AG-KILVDIAN  125 (245)
T ss_dssp             HH------HCSEEEECSCGGGHHHHHHHHCHHHH-TT-SEEEECCC
T ss_pred             Hh------cCCEEEEccCcHHHHHHHHHhhhhhc-CC-CEEEECCC
Confidence            32      4799999999864332   22 2334 55 67777773

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=95.76  E-value=0.013  Score=53.55  Aligned_cols=46  Identities=24%  Similarity=0.463  Sum_probs=39.3

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++.++.+.++++|.
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  189 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGL  189 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCc
Confidence            47899999999999999999999999 99999998755555555564

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.76  E-value=0.029  Score=49.88  Aligned_cols=92  Identities=14%  Similarity=0.203  Sum_probs=57.1

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc-------chHHHHH---HcCCCeee-CCCCCCCchHHHHHHHhc
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP-------CRKDKGE---AFGMTDFI-NPDDEPNKSISELVKEMT  264 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~-------~~~~~~~---~lga~~v~-~~~~~~~~~~~~~~~~~~  264 (332)
                      +++|||+|+ |.+|..+++.+...|. +|++++++.       ++.+.++   ..|...+. |..+  .+    .+.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d--~~----~l~~~~   74 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIND--HE----TLVKAI   74 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTC--HH----HHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCC--HH----HHHHHH
Confidence            467999998 9999999998888898 899998886       5544333   33544332 3322  12    233333


Q ss_pred             CCCCccEEEEcCCCh--HHHHHHHHHhccCC--cEEE
Q 043260          265 HGTGVDYGFECTGVA--SLISEALEATKLGK--GKVM  297 (332)
Q Consensus       265 ~~~g~d~vid~~g~~--~~~~~~~~~l~~~~--G~~v  297 (332)
                      .  ++|+||++++..  .....+++.+...+  .+++
T Consensus        75 ~--~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           75 K--QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             T--TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             h--CCCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence            2  599999998852  12234444444331  4665

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=95.76  E-value=0.031  Score=46.92  Aligned_cols=94  Identities=17%  Similarity=0.126  Sum_probs=64.6

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-CCCeeeCCCCCCCchHHHHHHHhcCCCCccE
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-GMTDFINPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-ga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      .+.++.+||-+|+|. |..+..+++. |. +|+++|.+++-++.+++. +...+. .+-   .       ++.....||+
T Consensus        40 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~d~---~-------~~~~~~~fD~  105 (211)
T 3e23_A           40 ELPAGAKILELGCGA-GYQAEAMLAA-GF-DVDATDGSPELAAEASRRLGRPVRT-MLF---H-------QLDAIDAYDA  105 (211)
T ss_dssp             TSCTTCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHTSCCEE-CCG---G-------GCCCCSCEEE
T ss_pred             hcCCCCcEEEECCCC-CHHHHHHHHc-CC-eEEEECCCHHHHHHHHHhcCCceEE-eee---c-------cCCCCCcEEE
Confidence            467889999999865 6666666665 77 999999999888877664 433221 111   1       1112447999


Q ss_pred             EEEcCCC--------hHHHHHHHHHhccCCcEEEEEcC
Q 043260          272 GFECTGV--------ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       272 vid~~g~--------~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      |+....-        ...+..+.+.|+++ |++++.-.
T Consensus       106 v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  142 (211)
T 3e23_A          106 VWAHACLLHVPRDELADVLKLIWRALKPG-GLFYASYK  142 (211)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             EEecCchhhcCHHHHHHHHHHHHHhcCCC-cEEEEEEc
Confidence            9985421        14678899999998 99887643

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=95.75  E-value=0.044  Score=51.25  Aligned_cols=84  Identities=19%  Similarity=0.124  Sum_probs=52.6

Q ss_pred             HhhCC-CCCCEEEEECC-ChHHHHHHHHHHH-cCCCeEEEEcCCcch----------------HHHHHHcCCCee-e--C
Q 043260          190 KEFKV-EKGSSVAVFGL-GAVGLGVMDRARI-QGAAKIIGIDKNPCR----------------KDKGEAFGMTDF-I--N  247 (332)
Q Consensus       190 ~~~~~-~~g~~vlV~G~-g~vG~~~~~la~~-~G~~~Vi~~~~~~~~----------------~~~~~~lga~~v-~--~  247 (332)
                      ....+ ..++++||+|+ +++|++.++.+.. .|+ +|++++++.++                .+.+++.|.... +  |
T Consensus        39 ~~~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~D  117 (405)
T 3zu3_A           39 TEGPIANGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGD  117 (405)
T ss_dssp             HHCCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             hcCCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECC
Confidence            33444 44677788898 9999998888888 999 89988765432                123455665432 2  2


Q ss_pred             CCCCCCchHHH---HHHHhcCCCCccEEEEcCCC
Q 043260          248 PDDEPNKSISE---LVKEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       248 ~~~~~~~~~~~---~~~~~~~~~g~d~vid~~g~  278 (332)
                      ..+  .++..+   .+.+.. + +.|++++++|.
T Consensus       118 vtd--~~~v~~~v~~i~~~~-G-~IDiLVNNAG~  147 (405)
T 3zu3_A          118 AFS--DEIKQLTIDAIKQDL-G-QVDQVIYSLAS  147 (405)
T ss_dssp             TTS--HHHHHHHHHHHHHHT-S-CEEEEEECCCC
T ss_pred             CCC--HHHHHHHHHHHHHHc-C-CCCEEEEcCcc
Confidence            222  233333   333333 3 59999999875

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=95.74  E-value=0.018  Score=51.32  Aligned_cols=98  Identities=12%  Similarity=0.104  Sum_probs=66.0

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-CC-------C--eeeCCCCCCCchHHHHHHHh
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-GM-------T--DFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-ga-------~--~v~~~~~~~~~~~~~~~~~~  263 (332)
                      ..++++||++|+|. |..+..+++..+..+|++++.+++-.+.+++. ..       .  .++.      .+..+.+...
T Consensus        76 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~l~~~  148 (283)
T 2i7c_A           76 SKEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI------EDASKFLENV  148 (283)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE------SCHHHHHHHC
T ss_pred             CCCCCeEEEEeCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEE------CChHHHHHhC
Confidence            35678999998865 66666677665555999999999988888763 21       1  2221      2333334333


Q ss_pred             cCCCCccEEEEcCCC----------hHHHHHHHHHhccCCcEEEEEcC
Q 043260          264 THGTGVDYGFECTGV----------ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       264 ~~~~g~d~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                        ...||+|+-....          ...+..+.+.|+++ |.++....
T Consensus       149 --~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~~~  193 (283)
T 2i7c_A          149 --TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN-GYCVAQCE  193 (283)
T ss_dssp             --CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             --CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEECC
Confidence              3379999974321          35678999999998 99987753

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=95.74  E-value=0.076  Score=48.07  Aligned_cols=88  Identities=18%  Similarity=0.229  Sum_probs=58.6

Q ss_pred             EEEEECCChHHHHH-HHHHHHcCCCeEE-EEcCCcchHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          199 SVAVFGLGAVGLGV-MDRARIQGAAKII-GIDKNPCRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       199 ~vlV~G~g~vG~~~-~~la~~~G~~~Vi-~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      +|.|+|+|.+|... +..++..+. +++ ++++++++.+ +++++|...++       .++.+.+    ....+|+|+.+
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~-~~vav~d~~~~~~~~~~~~~g~~~~~-------~~~~~~l----~~~~~D~V~i~   69 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGG-EVVSMMSTSAERGAAYATENGIGKSV-------TSVEELV----GDPDVDAVYVS   69 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTC-EEEEEECSCHHHHHHHHHHTTCSCCB-------SCHHHHH----TCTTCCEEEEC
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCC-eEEEEECCCHHHHHHHHHHcCCCccc-------CCHHHHh----cCCCCCEEEEe
Confidence            68899999999876 544444677 655 6788887765 45667764332       2233222    22368999999


Q ss_pred             CCChHHHHHHHHHhccCCcEEEEEc
Q 043260          276 TGVASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       276 ~g~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      +....+...+.+++..  |+-+++.
T Consensus        70 tp~~~h~~~~~~al~~--Gk~v~~e   92 (332)
T 2glx_A           70 TTNELHREQTLAAIRA--GKHVLCE   92 (332)
T ss_dssp             SCGGGHHHHHHHHHHT--TCEEEEC
T ss_pred             CChhHhHHHHHHHHHC--CCeEEEe
Confidence            9987777888888876  4444443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=95.73  E-value=0.0072  Score=53.34  Aligned_cols=94  Identities=19%  Similarity=0.316  Sum_probs=64.8

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHc---CCCeEEEEcCCcchHHHHHH----cCCC---eeeCCCCCCCchHHHHHHH
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQ---GAAKIIGIDKNPCRKDKGEA----FGMT---DFINPDDEPNKSISELVKE  262 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~---G~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~~~~  262 (332)
                      -+++|.+||-+|+|. |..+..+++..   |+ +|+++|.+++-++.+++    .+..   .++..+          +.+
T Consensus        67 ~~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D----------~~~  134 (261)
T 4gek_A           67 FVQPGTQVYDLGCSL-GAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGD----------IRD  134 (261)
T ss_dssp             HCCTTCEEEEETCTT-THHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC----------TTT
T ss_pred             hCCCCCEEEEEeCCC-CHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEeecc----------ccc
Confidence            378999999999976 77777888764   56 89999999987777654    3432   122211          112


Q ss_pred             hcCCCCccEEEEcCCC--------hHHHHHHHHHhccCCcEEEEEc
Q 043260          263 MTHGTGVDYGFECTGV--------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      +.. ..+|+|+....-        ...+..+.+.|+|+ |++++.-
T Consensus       135 ~~~-~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG-G~lii~e  178 (261)
T 4gek_A          135 IAI-ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG-GALVLSE  178 (261)
T ss_dssp             CCC-CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ccc-cccccceeeeeeeecCchhHhHHHHHHHHHcCCC-cEEEEEe
Confidence            222 368998875432        13578999999998 9998763

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.72  E-value=0.041  Score=50.31  Aligned_cols=101  Identities=18%  Similarity=0.238  Sum_probs=64.2

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHH-HcCCC--eee--CCCCCCCchHHHHHHHhcCCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGE-AFGMT--DFI--NPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~-~lga~--~v~--~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      -.+++|||+|+ |.+|..+++.+... |..+|+++++++.+.+.+. ++...  .++  |..+   .   +.+.+...  
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d---~---~~l~~~~~--   90 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRD---L---ERLNYALE--   90 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTC---H---HHHHHHTT--
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCC---H---HHHHHHHh--
Confidence            45789999998 99999999888888 8668999999887765443 33221  222  3322   2   23444433  


Q ss_pred             CccEEEEcCCChH-----------------HHHHHHHHhccC-CcEEEEEcCCC
Q 043260          268 GVDYGFECTGVAS-----------------LISEALEATKLG-KGKVMAIGAAN  303 (332)
Q Consensus       268 g~d~vid~~g~~~-----------------~~~~~~~~l~~~-~G~~v~~G~~~  303 (332)
                      ++|+||.+++...                 ....+++.+.+. -++++.+++..
T Consensus        91 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~  144 (344)
T 2gn4_A           91 GVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDK  144 (344)
T ss_dssp             TCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGG
T ss_pred             cCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence            6999999987421                 012334444433 15888888643

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.70  E-value=0.029  Score=50.55  Aligned_cols=80  Identities=14%  Similarity=0.109  Sum_probs=48.4

Q ss_pred             hCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH--HHHHHcC--CC-eee--CCCCCCCchHHHHHHHh
Q 043260          192 FKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK--DKGEAFG--MT-DFI--NPDDEPNKSISELVKEM  263 (332)
Q Consensus       192 ~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~--~~~~~lg--a~-~v~--~~~~~~~~~~~~~~~~~  263 (332)
                      -.-.++.+|||+|+ |.+|..+++.+...|. +|++++++..+.  +.++.+.  .. .++  |..+  .+++.+.+...
T Consensus         9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~   85 (335)
T 1rpn_A            9 HHGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD--ACSVQRAVIKA   85 (335)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTC--HHHHHHHHHHH
T ss_pred             cccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCccccccchhhccccCceEEEECCCCC--HHHHHHHHHHc
Confidence            34578899999998 9999999999988998 999999876541  2233331  11 222  2222  23333333322


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                          ++|+||.+++.
T Consensus        86 ----~~d~Vih~A~~   96 (335)
T 1rpn_A           86 ----QPQEVYNLAAQ   96 (335)
T ss_dssp             ----CCSEEEECCSC
T ss_pred             ----CCCEEEECccc
Confidence                58999999874

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.69  E-value=0.015  Score=51.11  Aligned_cols=87  Identities=20%  Similarity=0.158  Sum_probs=57.0

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      .+ +++|+|+|++|.+++..+...|+++|++++++.+|.+.+ ++++.   ...     ++..+.+.      .+|+||+
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~-----~~~~~~~~------~aDiVIn  172 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSL-----DQLDEVVK------KAKSLFN  172 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEG-----GGHHHHHH------TCSEEEE
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCH-----HHHHhhhc------CCCEEEE
Confidence            46 899999999999999999999988999999998775533 22221   111     23322221      4899999


Q ss_pred             cCCCh-----HHHHHHHHHhccCCcEEEEEc
Q 043260          275 CTGVA-----SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       275 ~~g~~-----~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      +++..     ..+  ..+.++++ ..++.+-
T Consensus       173 atp~gm~p~~~~i--~~~~l~~~-~~V~Div  200 (253)
T 3u62_A          173 TTSVGMKGEELPV--SDDSLKNL-SLVYDVI  200 (253)
T ss_dssp             CSSTTTTSCCCSC--CHHHHTTC-SEEEECS
T ss_pred             CCCCCCCCCCCCC--CHHHhCcC-CEEEEee
Confidence            88642     111  13456665 6666553

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=95.68  E-value=0.015  Score=51.71  Aligned_cols=96  Identities=16%  Similarity=0.057  Sum_probs=66.1

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc------CC--C--eeeCCCCCCCchHHHHHHHhc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF------GM--T--DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l------ga--~--~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      ..+++||++|+|. |..+..+++..+..+|++++.+++-.+.+++.      +.  .  .++..+      ..+.+.+. 
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D------~~~~l~~~-  145 (275)
T 1iy9_A           74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD------GFMHIAKS-  145 (275)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESC------SHHHHHTC-
T ss_pred             CCCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECc------HHHHHhhC-
Confidence            3568999999865 66666777766766999999999888877652      21  1  233222      22334332 


Q ss_pred             CCCCccEEEEcCCC----------hHHHHHHHHHhccCCcEEEEEc
Q 043260          265 HGTGVDYGFECTGV----------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       265 ~~~g~d~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                       ...||+|+-....          .+.+..+.+.|+++ |.++...
T Consensus       146 -~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pg-G~lv~~~  189 (275)
T 1iy9_A          146 -ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT  189 (275)
T ss_dssp             -CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred             -CCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence             3479999985543          35789999999998 9998764

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=95.68  E-value=0.039  Score=52.69  Aligned_cols=101  Identities=17%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHH----HcCCCeeeCCCCCCCchHHHHHHHhcC
Q 043260          191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGE----AFGMTDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~----~lga~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      ....++|++||=+|+|+ |..++++++.++ ..+|+++|.++++++.++    .+|...+....    .+..+ +....+
T Consensus       100 ~L~~~~g~~VLDlcaGp-Ggkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~----~Da~~-l~~~~~  173 (456)
T 3m4x_A          100 AAAAKPGEKVLDLCAAP-GGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN----HAPAE-LVPHFS  173 (456)
T ss_dssp             HHCCCTTCEEEESSCTT-CHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEEC----CCHHH-HHHHHT
T ss_pred             HcCCCCCCEEEEECCCc-CHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe----CCHHH-hhhhcc
Confidence            34678999999888755 555566666543 348999999999887664    46765332111    11211 222122


Q ss_pred             CCCccEEEE---cCCCh-------------------------HHHHHHHHHhccCCcEEEEE
Q 043260          266 GTGVDYGFE---CTGVA-------------------------SLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       266 ~~g~d~vid---~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~  299 (332)
                      + .||.|+-   |+|..                         ..+..+++.|+++ |+++..
T Consensus       174 ~-~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYs  233 (456)
T 3m4x_A          174 G-FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNK-GQLIYS  233 (456)
T ss_dssp             T-CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred             c-cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEE
Confidence            3 6999986   44432                         3577888999998 998864

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.67  E-value=0.018  Score=51.36  Aligned_cols=96  Identities=17%  Similarity=0.155  Sum_probs=64.7

Q ss_pred             hcccchhhhHHHHHHhhCCCCCCEEEEECCC-hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCc
Q 043260          176 FLSCGYSSGFGAAWKEFKVEKGSSVAVFGLG-AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK  254 (332)
Q Consensus       176 ~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g-~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~  254 (332)
                      .+||+.......+.+..---.|.+++|+|.| .+|.-+++++...|+ +|+++.+..                      .
T Consensus       138 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t----------------------~  194 (288)
T 1b0a_A          138 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT----------------------K  194 (288)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC----------------------S
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeCCc----------------------h
Confidence            3444443334334222223578999999996 589999999999998 899885332                      2


Q ss_pred             hHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       255 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ++.+.++      .+|+||.++|.+..+..  ++++++ ..++.+|...
T Consensus       195 ~L~~~~~------~ADIVI~Avg~p~lI~~--~~vk~G-avVIDVgi~r  234 (288)
T 1b0a_A          195 NLRHHVE------NADLLIVAVGKPGFIPG--DWIKEG-AIVIDVGINR  234 (288)
T ss_dssp             CHHHHHH------HCSEEEECSCCTTCBCT--TTSCTT-CEEEECCCEE
T ss_pred             hHHHHhc------cCCEEEECCCCcCcCCH--HHcCCC-cEEEEccCCc
Confidence            3333343      48999999998754322  346887 8999999764

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.67  E-value=0.0072  Score=53.91  Aligned_cols=91  Identities=11%  Similarity=0.101  Sum_probs=57.0

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .+++++|+|+|++|.+++..+...|+++|+++.|+.++.+.+.+ .. ...        .+ +.+.+..  ..+|+||++
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~-~~-~~~--------~~-~~~~~~~--~~aDiVIna  182 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSL-NI-NKI--------NL-SHAESHL--DEFDIIINT  182 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS-CC-EEE--------CH-HHHHHTG--GGCSEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-hc-ccc--------cH-hhHHHHh--cCCCEEEEC
Confidence            57899999999999999999999998889999999877543321 00 111        11 1233322  258999999


Q ss_pred             CCChHHHHH-----HHHHhccCCcEEEEEcC
Q 043260          276 TGVASLISE-----ALEATKLGKGKVMAIGA  301 (332)
Q Consensus       276 ~g~~~~~~~-----~~~~l~~~~G~~v~~G~  301 (332)
                      ++.. ....     ..+.++++ ..++.+--
T Consensus       183 Tp~G-m~~~~~~~l~~~~l~~~-~~V~D~vY  211 (277)
T 3don_A          183 TPAG-MNGNTDSVISLNRLASH-TLVSDIVY  211 (277)
T ss_dssp             CC--------CCSSCCTTCCSS-CEEEESCC
T ss_pred             ccCC-CCCCCcCCCCHHHcCCC-CEEEEecC
Confidence            8763 1111     13445665 66666643

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.67  E-value=0.014  Score=52.88  Aligned_cols=77  Identities=14%  Similarity=0.123  Sum_probs=49.1

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCCCeee--CCCCCCCchHHHHHHHhcCCCCcc
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGMTDFI--NPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga~~v~--~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      -.+++|||+|+ |.+|..+++.+...|. +|++++++..+.. .++++..-.++  |..+  .+++.+.+.+.    ++|
T Consensus        18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d--~~~~~~~~~~~----~~D   90 (330)
T 2pzm_A           18 GSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFATGKREVLPPVAGLSVIEGSVTD--AGLLERAFDSF----KPT   90 (330)
T ss_dssp             TTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCSSSCGGGSCSCTTEEEEECCTTC--HHHHHHHHHHH----CCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCccchhhhhccCCceEEEeeCCC--HHHHHHHHhhc----CCC
Confidence            35678999998 9999999999888898 9999988654321 11222111222  2222  23333334332    689


Q ss_pred             EEEEcCCC
Q 043260          271 YGFECTGV  278 (332)
Q Consensus       271 ~vid~~g~  278 (332)
                      +||++++.
T Consensus        91 ~vih~A~~   98 (330)
T 2pzm_A           91 HVVHSAAA   98 (330)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999873

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=95.66  E-value=0.029  Score=49.01  Aligned_cols=98  Identities=14%  Similarity=0.136  Sum_probs=64.0

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC--eeeCCCCCCCchHHHHHHHh-cCC
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT--DFINPDDEPNKSISELVKEM-THG  266 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~--~v~~~~~~~~~~~~~~~~~~-~~~  266 (332)
                      ..++.+||=+|+|. |..++.+++.....+|+++|.+++..+.+++    +|..  .++..+      .. .+... ...
T Consensus        78 ~~~~~~vLDiG~G~-G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d------~~-~~~~~~~~~  149 (249)
T 3g89_A           78 WQGPLRVLDLGTGA-GFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGR------AE-VLAREAGHR  149 (249)
T ss_dssp             CCSSCEEEEETCTT-TTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECC------HH-HHTTSTTTT
T ss_pred             cCCCCEEEEEcCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECc------HH-HhhcccccC
Confidence            35788999999865 6666777777644499999999998876644    5654  233221      11 11110 012


Q ss_pred             CCccEEEEcCCC--hHHHHHHHHHhccCCcEEEEEc
Q 043260          267 TGVDYGFECTGV--ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       267 ~g~d~vid~~g~--~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ..||+|+...-.  ...+..+.+.|+++ |+++.+-
T Consensus       150 ~~fD~I~s~a~~~~~~ll~~~~~~Lkpg-G~l~~~~  184 (249)
T 3g89_A          150 EAYARAVARAVAPLCVLSELLLPFLEVG-GAAVAMK  184 (249)
T ss_dssp             TCEEEEEEESSCCHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             CCceEEEECCcCCHHHHHHHHHHHcCCC-eEEEEEe
Confidence            379999974332  34567788899998 9988764

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.66  E-value=0.087  Score=46.68  Aligned_cols=97  Identities=22%  Similarity=0.151  Sum_probs=60.4

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcC-CCeEEEEcCCcchHH--HHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccE
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQG-AAKIIGIDKNPCRKD--KGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~--~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      .++|||+|+ |.+|..+++.+...| . +|+++++++++..  .+...+...+. |..+  .    +.+.+...  ++|+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d--~----~~l~~~~~--~~d~   75 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPRKKAAKELRLQGAEVVQGDQDD--Q----VIMELALN--GAYA   75 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS-EEEEEESCTTSHHHHHHHHTTCEEEECCTTC--H----HHHHHHHT--TCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc-eEEEEEcCCCCHHHHHHHHCCCEEEEecCCC--H----HHHHHHHh--cCCE
Confidence            468999998 999999998888888 7 9999999876642  33344554332 3322  1    22333332  5899


Q ss_pred             EEEcCCChH---------HHHHHHHHhccC-CcEEEEEcCC
Q 043260          272 GFECTGVAS---------LISEALEATKLG-KGKVMAIGAA  302 (332)
Q Consensus       272 vid~~g~~~---------~~~~~~~~l~~~-~G~~v~~G~~  302 (332)
                      ||.+++...         ....+++.+... -++++..+..
T Consensus        76 vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~  116 (299)
T 2wm3_A           76 TFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLE  116 (299)
T ss_dssp             EEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred             EEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence            999987421         123444444433 1577775543

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=95.65  E-value=0.043  Score=52.82  Aligned_cols=96  Identities=13%  Similarity=0.207  Sum_probs=64.1

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC--eeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT--DFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~--~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.++.  .+...     .+..+.+..+   ...|+||-+
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~g~~i~~~-----~s~~e~v~~l---~~aDvVil~   75 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGTKVVGA-----QSLKEMVSKL---KKPRRIILL   75 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTSSCEEC-----SSHHHHHHTB---CSSCEEEEC
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcccCCCceecc-----CCHHHHHhhc---cCCCEEEEe
Confidence            468999999999999999999998 999999999998887765432  11111     2344444332   247999999


Q ss_pred             CCChHHHHH----HHHHhccCCcEEEEEcCCC
Q 043260          276 TGVASLISE----ALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       276 ~g~~~~~~~----~~~~l~~~~G~~v~~G~~~  303 (332)
                      +.....+..    +...+.++ ..++..+...
T Consensus        76 Vp~~~~v~~vl~~l~~~L~~g-~iIId~st~~  106 (484)
T 4gwg_A           76 VKAGQAVDDFIEKLVPLLDTG-DIIIDGGNSE  106 (484)
T ss_dssp             SCSSHHHHHHHHHHGGGCCTT-CEEEECSCCC
T ss_pred             cCChHHHHHHHHHHHHhcCCC-CEEEEcCCCC
Confidence            887534333    33444454 5555555443

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.65  E-value=0.032  Score=49.15  Aligned_cols=80  Identities=14%  Similarity=0.179  Sum_probs=50.4

Q ss_pred             CCCEEEEECC---ChHHHHHHHHHHHcCCCeEEEEcCCcc---hHHHH-HHcCCCeee--CCCCCCCchHHHHHHHhcC-
Q 043260          196 KGSSVAVFGL---GAVGLGVMDRARIQGAAKIIGIDKNPC---RKDKG-EAFGMTDFI--NPDDEPNKSISELVKEMTH-  265 (332)
Q Consensus       196 ~g~~vlV~G~---g~vG~~~~~la~~~G~~~Vi~~~~~~~---~~~~~-~~lga~~v~--~~~~~~~~~~~~~~~~~~~-  265 (332)
                      .++++||+|+   |++|.++++.+...|+ +|++++++++   ..+.+ ++.+...++  |..+  .+++.+.+.+... 
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK--EEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4688999985   6999999999999998 8999998875   23322 223422222  3332  2333333332211 


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      -.++|++|+++|.
T Consensus        82 ~g~id~lv~nAg~   94 (275)
T 2pd4_A           82 LGSLDFIVHSVAF   94 (275)
T ss_dssp             TSCEEEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            1158999999873

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=95.65  E-value=0.044  Score=47.87  Aligned_cols=101  Identities=18%  Similarity=0.242  Sum_probs=69.1

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC---eeeCCCCCCCchHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT---DFINPDDEPNKSISELV  260 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~~  260 (332)
                      +.+...+.++++||-+|+|. |..+..+++..+. +|++++.+++..+.+++    .|..   .++..+.   .++    
T Consensus        53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~----  123 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADA---MDL----  123 (273)
T ss_dssp             HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC----
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc---ccC----
Confidence            34566788999999999976 7788888888887 99999999988776654    2432   2222211   110    


Q ss_pred             HHhcCCCCccEEEEcCC-----C-hHHHHHHHHHhccCCcEEEEEc
Q 043260          261 KEMTHGTGVDYGFECTG-----V-ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                        -.....||+|+..-.     . ...+..+.+.|+++ |++++..
T Consensus       124 --~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~  166 (273)
T 3bus_A          124 --PFEDASFDAVWALESLHHMPDRGRALREMARVLRPG-GTVAIAD  166 (273)
T ss_dssp             --CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred             --CCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC-eEEEEEE
Confidence              012236999986422     2 24578889999998 9988765

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.64  E-value=0.047  Score=48.76  Aligned_cols=93  Identities=16%  Similarity=0.134  Sum_probs=59.7

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .++|||+|+ |.+|..+++.+...|. +|++++++..+.+ ++  +.. ++..+    -. .+.+.+...  ++|+||.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~--~~~-~~~~D----l~-~~~~~~~~~--~~d~Vih~   69 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIGNKA-IN--DYE-YRVSD----YT-LEDLINQLN--DVDAVVHL   69 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC--------CCE-EEECC----CC-HHHHHHHTT--TCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCCccc-CC--ceE-EEEcc----cc-HHHHHHhhc--CCCEEEEc
Confidence            368999998 9999999999999998 9999999855554 33  332 33222    22 445555544  69999999


Q ss_pred             CCCh-------------HHHHHHHHHhccCC-cEEEEEcC
Q 043260          276 TGVA-------------SLISEALEATKLGK-GKVMAIGA  301 (332)
Q Consensus       276 ~g~~-------------~~~~~~~~~l~~~~-G~~v~~G~  301 (332)
                      ++..             .....+++.+...+ .+++.+++
T Consensus        70 a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS  109 (311)
T 3m2p_A           70 AATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYAST  109 (311)
T ss_dssp             CCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            8742             11234455554431 46887765

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.63  E-value=0.014  Score=54.36  Aligned_cols=111  Identities=18%  Similarity=0.194  Sum_probs=76.4

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc----ch---H-----HHHHHcCCCeeeCCCCCCCchHHHHHHHh
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP----CR---K-----DKGEAFGMTDFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~----~~---~-----~~~~~lga~~v~~~~~~~~~~~~~~~~~~  263 (332)
                      +..+|+|.|+|..|..+++++..+|.++|+++|++-    .|   +     .+++....    ...   ..++.+.++  
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~----~~~---~~~L~eav~--  257 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNR----EFK---SGTLEDALE--  257 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSC----TTC---CCSCSHHHH--
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCc----ccc---hhhHHHHhc--
Confidence            446899999999999999999999998999999863    11   1     12222110    000   133434442  


Q ss_pred             cCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEe
Q 043260          264 THGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGT  323 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~  323 (332)
                          ++|++|-+++..-.-++.++.++++ -.++.+.++.   .++.+.+... +..|..+
T Consensus       258 ----~ADV~IG~Sapgl~T~EmVk~Ma~~-pIIfalsNPt---~E~~pe~a~~~g~~i~at  310 (398)
T 2a9f_A          258 ----GADIFIGVSAPGVLKAEWISKMAAR-PVIFAMANPI---PEIYPDEALEAGAYIVGT  310 (398)
T ss_dssp             ----TTCSEEECCSTTCCCHHHHHTSCSS-CEEEECCSSS---CSSCHHHHHTTTCSEEEE
T ss_pred             ----cCCEEEecCCCCCCCHHHHHhhCCC-CEEEECCCCC---ccCCHHHHHHhCCeEEEe
Confidence                4799999887432346888999998 8998998876   4778887776 5556655

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.63  E-value=0.042  Score=49.09  Aligned_cols=68  Identities=16%  Similarity=0.247  Sum_probs=38.8

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      +++|||+|+ |.+|..+++.+...|. +|++++++..+.      + -...|..+  .+++.+.+...    ++|+||++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~------~-~~~~Dl~d--~~~~~~~~~~~----~~d~vih~   67 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW-HAVGCGFRRARP------K-FEQVNLLD--SNAVHHIIHDF----QPHVIVHC   67 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEC---------------------------CHHHHHHH----CCSEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC-eEEEEccCCCCC------C-eEEecCCC--HHHHHHHHHhh----CCCEEEEC
Confidence            578999998 9999999999888898 999998765431      1 01112221  12333333322    58999998


Q ss_pred             CCC
Q 043260          276 TGV  278 (332)
Q Consensus       276 ~g~  278 (332)
                      ++.
T Consensus        68 A~~   70 (315)
T 2ydy_A           68 AAE   70 (315)
T ss_dssp             C--
T ss_pred             Ccc
Confidence            874

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=95.63  E-value=0.063  Score=49.09  Aligned_cols=85  Identities=20%  Similarity=0.215  Sum_probs=59.5

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR-KDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~-~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      +.+|.|+|.|.+|.+.++.++..|. +|++.+++.++ .+.+++.|.. +.   +     ..+.+.      .+|+||-+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~~G~~-~~---~-----~~e~~~------~aDvVila   79 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGLK-VA---D-----VKTAVA------AADVVMIL   79 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTCE-EE---C-----HHHHHH------TCSEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHHCCCE-Ec---c-----HHHHHh------cCCEEEEe
Confidence            4579999999999999999999998 89999988766 6777888863 22   1     222221      47999999


Q ss_pred             CCChHHHHHHHH-----HhccCCcEEEEE
Q 043260          276 TGVASLISEALE-----ATKLGKGKVMAI  299 (332)
Q Consensus       276 ~g~~~~~~~~~~-----~l~~~~G~~v~~  299 (332)
                      +... .....++     .++++ ..++..
T Consensus        80 vp~~-~~~~v~~~~i~~~l~~~-~ivi~~  106 (338)
T 1np3_A           80 TPDE-FQGRLYKEEIEPNLKKG-ATLAFA  106 (338)
T ss_dssp             SCHH-HHHHHHHHHTGGGCCTT-CEEEES
T ss_pred             CCcH-HHHHHHHHHHHhhCCCC-CEEEEc
Confidence            9875 3344444     34444 455544

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=95.62  E-value=0.073  Score=45.40  Aligned_cols=101  Identities=17%  Similarity=0.186  Sum_probs=67.6

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC---eeeCCCCCCCchHHHHHHHhc
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT---DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~---~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      +.......++.+||-+|+|. |..+..+++. |..+|+++|.+++..+.+++....   .++..+.   .++      ..
T Consensus        35 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~------~~  103 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERADL---DKL------HL  103 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCG---GGC------CC
T ss_pred             HHHhccccCCCEEEEEcCcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcCh---hhc------cC
Confidence            43455667889999999865 6666666665 655899999999988888775432   1222111   110      01


Q ss_pred             CCCCccEEEEcCCC------hHHHHHHHHHhccCCcEEEEEc
Q 043260          265 HGTGVDYGFECTGV------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       265 ~~~g~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ....||+|+....-      ...+..+.+.|+++ |++++.-
T Consensus       104 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~  144 (243)
T 3bkw_A          104 PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPG-GHFVFST  144 (243)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CCCCceEEEEeccccccchHHHHHHHHHHhcCcC-cEEEEEe
Confidence            23379999975432      24678899999998 9988753

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.61  E-value=0.062  Score=47.86  Aligned_cols=93  Identities=14%  Similarity=0.097  Sum_probs=57.1

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc-----chHHHHHH---cCCCeeeCCCCCCCchHHHHHHHhcCCC
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP-----CRKDKGEA---FGMTDFINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~-----~~~~~~~~---lga~~v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      .++|||+|+ |.+|..+++.+...|. +|++++++.     ++.+.+++   .+. .++..+-   .+ .+.+.+...  
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~D~---~d-~~~l~~~~~--   75 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQMLLYFKQLGA-KLIEASL---DD-HQRLVDALK--   75 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHHHHHHHHTTTC-EEECCCS---SC-HHHHHHHHT--
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCcccchhHHHHHHHHHhCCe-EEEeCCC---CC-HHHHHHHHh--
Confidence            357999998 9999999999988998 899999873     34443332   243 3332221   11 123333332  


Q ss_pred             CccEEEEcCCCh------HHHHHHHHHhccCC--cEEE
Q 043260          268 GVDYGFECTGVA------SLISEALEATKLGK--GKVM  297 (332)
Q Consensus       268 g~d~vid~~g~~------~~~~~~~~~l~~~~--G~~v  297 (332)
                      ++|+||.+++..      .....+++.+...+  .+++
T Consensus        76 ~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           76 QVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             TCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             CCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            599999998742      12344555555441  3676

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.61  E-value=0.022  Score=49.56  Aligned_cols=80  Identities=20%  Similarity=0.216  Sum_probs=49.4

Q ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHH----HHHHcCCCe-ee--CCCCCCCchHHHHHH---
Q 043260          194 VEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGID-KNPCRKD----KGEAFGMTD-FI--NPDDEPNKSISELVK---  261 (332)
Q Consensus       194 ~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~-~~~~~~~----~~~~lga~~-v~--~~~~~~~~~~~~~~~---  261 (332)
                      ..+++++||+|+ |++|.++++.+...|+ +|++++ ++.++.+    .+++.+.+. ++  |..+  .++..+.+.   
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   86 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGD--WDSTKQAFDKVK   86 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCC--HHHHHHHHHHHH
Confidence            456788999998 9999999999999999 888876 4444432    233445432 22  2222  233333333   


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +..+  ++|++|+++|.
T Consensus        87 ~~~g--~id~lv~~Ag~  101 (256)
T 3ezl_A           87 AEVG--EIDVLVNNAGI  101 (256)
T ss_dssp             HHTC--CEEEEEECCCC
T ss_pred             HhcC--CCCEEEECCCC
Confidence            3322  58999999884

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=95.61  E-value=0.018  Score=51.89  Aligned_cols=100  Identities=15%  Similarity=0.092  Sum_probs=62.0

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC---------e-eeCCCCCCCchHHHHH
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT---------D-FINPDDEPNKSISELV  260 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~---------~-v~~~~~~~~~~~~~~~  260 (332)
                      .++.+||-+|+|. |..+..+++..+. +|+++|.+++-++.+++    .+..         . +.+...   +.+...+
T Consensus        47 ~~~~~VLDlGCG~-G~~l~~~~~~~~~-~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~---d~~~~~l  121 (302)
T 2vdw_A           47 SNKRKVLAIDFGN-GADLEKYFYGEIA-LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRS---DTFVSSV  121 (302)
T ss_dssp             CSCCEEEETTCTT-TTTHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTS---SSHHHHH
T ss_pred             CCCCeEEEEecCC-cHhHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhccc---chhhhhh
Confidence            4588999999965 4333344443344 99999999998877654    2321         1 111221   3333444


Q ss_pred             HHhcCCCCccEEEEcCCC---------hHHHHHHHHHhccCCcEEEEEc
Q 043260          261 KEMTHGTGVDYGFECTGV---------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~---------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      .+......||+|+....-         ...+..+.+.|+|+ |.++..-
T Consensus       122 ~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpG-G~~i~~~  169 (302)
T 2vdw_A          122 REVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASG-GKVLITT  169 (302)
T ss_dssp             HTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             hccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCC-CEEEEEe
Confidence            433333479999864321         35688999999998 9987643

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.60  E-value=0.048  Score=49.57  Aligned_cols=89  Identities=13%  Similarity=0.062  Sum_probs=56.4

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc----chHHHHH---HcCCCeee-CCCCCCCchHHHHHHHhcCCC
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP----CRKDKGE---AFGMTDFI-NPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~----~~~~~~~---~lga~~v~-~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      .++|||+|+ |.+|..+++.+...|. +|++++++.    ++.+.++   ..+...+. |..+  .+++.+.+.+    .
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d--~~~l~~~~~~----~   82 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR-PTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINE--QEAMEKILKE----H   82 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTC--HHHHHHHHHH----T
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCC--HHHHHHHHhh----C
Confidence            357999998 9999999999999997 899998876    4444333   33444332 3322  2333333332    2


Q ss_pred             CccEEEEcCCCh--HHHHHHHHHhccC
Q 043260          268 GVDYGFECTGVA--SLISEALEATKLG  292 (332)
Q Consensus       268 g~d~vid~~g~~--~~~~~~~~~l~~~  292 (332)
                      ++|+||.+++..  .....+++.++..
T Consensus        83 ~~d~Vi~~a~~~n~~~~~~l~~aa~~~  109 (346)
T 3i6i_A           83 EIDIVVSTVGGESILDQIALVKAMKAV  109 (346)
T ss_dssp             TCCEEEECCCGGGGGGHHHHHHHHHHH
T ss_pred             CCCEEEECCchhhHHHHHHHHHHHHHc
Confidence            699999998852  1223455555544

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=95.60  E-value=0.057  Score=47.29  Aligned_cols=105  Identities=14%  Similarity=0.103  Sum_probs=66.0

Q ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-------CCC---eeeCCCCCCCchH-HHHH
Q 043260          192 FKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-------GMT---DFINPDDEPNKSI-SELV  260 (332)
Q Consensus       192 ~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-------ga~---~v~~~~~~~~~~~-~~~~  260 (332)
                      ....++++||-+|+|. |..++.+++.....+|++++.+++..+.+++.       +..   .++..+-   .++ .+..
T Consensus        32 ~~~~~~~~VLDlG~G~-G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~---~~~~~~~~  107 (260)
T 2ozv_A           32 VADDRACRIADLGAGA-GAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV---TLRAKARV  107 (260)
T ss_dssp             CCCCSCEEEEECCSSS-SHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCT---TCCHHHHH
T ss_pred             hcccCCCEEEEeCChH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCH---HHHhhhhh
Confidence            4567788899888855 55666667766323999999999988877653       221   2333322   222 1111


Q ss_pred             HHhcCCCCccEEEEcCC------------------------ChHHHHHHHHHhccCCcEEEEEcC
Q 043260          261 KEMTHGTGVDYGFECTG------------------------VASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g------------------------~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      .+......||+|+.+..                        -...+..+.+.|+++ |+++++-.
T Consensus       108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  171 (260)
T 2ozv_A          108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSG-GQLSLISR  171 (260)
T ss_dssp             HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCC-CEEEEEEc
Confidence            12222347999998621                        123567888999998 99987643

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=95.59  E-value=0.075  Score=49.79  Aligned_cols=101  Identities=11%  Similarity=0.089  Sum_probs=70.7

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      +...+.++.+||-+|+|. |..+..+++ .|. +|+.+|.+++-.+.+++.+.......-.   .+..+.+.. .+ ..|
T Consensus       101 ~~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~---~~~~~~l~~-~~-~~f  172 (416)
T 4e2x_A          101 ATELTGPDPFIVEIGCND-GIMLRTIQE-AGV-RHLGFEPSSGVAAKAREKGIRVRTDFFE---KATADDVRR-TE-GPA  172 (416)
T ss_dssp             HTTTCSSSCEEEEETCTT-TTTHHHHHH-TTC-EEEEECCCHHHHHHHHTTTCCEECSCCS---HHHHHHHHH-HH-CCE
T ss_pred             HHhCCCCCCEEEEecCCC-CHHHHHHHH-cCC-cEEEECCCHHHHHHHHHcCCCcceeeec---hhhHhhccc-CC-CCE
Confidence            445667899999999866 666666665 577 9999999999999998887655443322   233333321 12 369


Q ss_pred             cEEEEcCC-----C-hHHHHHHHHHhccCCcEEEEE
Q 043260          270 DYGFECTG-----V-ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       270 d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      |+|+..-.     . ...+..+.+.|+++ |++++.
T Consensus       173 D~I~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~  207 (416)
T 4e2x_A          173 NVIYAANTLCHIPYVQSVLEGVDALLAPD-GVFVFE  207 (416)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEEECChHHhcCCHHHHHHHHHHHcCCC-eEEEEE
Confidence            99997543     2 24678999999998 998875

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=95.58  E-value=0.048  Score=48.45  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=55.7

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      .+|.|+|+ |.+|...+..+...|. +|+++++++++.+.+.+.|.+.. +.     .       +..  ..+|+||.++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~g~~~~-~~-----~-------~~~--~~aDvVi~av   75 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQGMGIPLT-DG-----D-------GWI--DEADVVVLAL   75 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHHTTCCCC-CS-----S-------GGG--GTCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHhcCCCcC-CH-----H-------HHh--cCCCEEEEcC
Confidence            47999999 9999999999989998 99999999988887777774321 11     1       111  2589999999


Q ss_pred             CChHHHHHHHHHhc
Q 043260          277 GVASLISEALEATK  290 (332)
Q Consensus       277 g~~~~~~~~~~~l~  290 (332)
                      ... .+...++.+.
T Consensus        76 ~~~-~~~~v~~~l~   88 (286)
T 3c24_A           76 PDN-IIEKVAEDIV   88 (286)
T ss_dssp             CHH-HHHHHHHHHG
T ss_pred             Cch-HHHHHHHHHH
Confidence            875 3555555443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.58  E-value=0.045  Score=46.54  Aligned_cols=99  Identities=14%  Similarity=0.168  Sum_probs=67.1

Q ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCC-CeeeCCCCCCCchHHHHHHHhcCC
Q 043260          192 FKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGM-TDFINPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       192 ~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga-~~v~~~~~~~~~~~~~~~~~~~~~  266 (332)
                      ..++++++||=+|+|..|..+..+++..+. +|+++|.+++..+.+++    .|. -.++..+.   ..    +..+.+ 
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~---~~----~~~~~~-  121 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVKSNG---GI----IKGVVE-  121 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS---CS----STTTCC-
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc---hh----hhhccc-
Confidence            346789999999998558888888887666 99999999988776653    343 23332221   00    111222 


Q ss_pred             CCccEEEEcCCC-------------------------hHHHHHHHHHhccCCcEEEEEc
Q 043260          267 TGVDYGFECTGV-------------------------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       267 ~g~d~vid~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ..||+|+-...-                         ...+..+.+.|+++ |+++++-
T Consensus       122 ~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  179 (230)
T 3evz_A          122 GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG-GKVALYL  179 (230)
T ss_dssp             SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC-eEEEEEe
Confidence            379999965220                         34678888899998 9988863

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=95.56  E-value=0.04  Score=50.01  Aligned_cols=94  Identities=10%  Similarity=0.019  Sum_probs=64.6

Q ss_pred             CEEEEECCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHHc-CC---C--eeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEAF-GM---T--DFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~l-ga---~--~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      .+||++|+|. |..+..+++.. +. +|++++.+++-.+.+++. +.   .  .++.      .+..+.+.+..+ ..||
T Consensus        91 ~rVLdIG~G~-G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~------~Da~~~l~~~~~-~~fD  161 (317)
T 3gjy_A           91 LRITHLGGGA-CTMARYFADVYPQS-RNTVVELDAELARLSREWFDIPRAPRVKIRV------DDARMVAESFTP-ASRD  161 (317)
T ss_dssp             CEEEEESCGG-GHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCCCTTTEEEEE------SCHHHHHHTCCT-TCEE
T ss_pred             CEEEEEECCc-CHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhccccCCCceEEEE------CcHHHHHhhccC-CCCC
Confidence            3899999876 67777888865 56 999999999999888763 32   1  1221      333444444322 3799


Q ss_pred             EEEEcCCC----------hHHHHHHHHHhccCCcEEEEEcC
Q 043260          271 YGFECTGV----------ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       271 ~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      +||-....          .+.+..+.+.|+++ |.++..-.
T Consensus       162 vIi~D~~~~~~~~~~L~t~efl~~~~r~Lkpg-Gvlv~~~~  201 (317)
T 3gjy_A          162 VIIRDVFAGAITPQNFTTVEFFEHCHRGLAPG-GLYVANCG  201 (317)
T ss_dssp             EEEECCSTTSCCCGGGSBHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             EEEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEEec
Confidence            99874321          35688999999998 98876543

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=95.56  E-value=0.041  Score=48.92  Aligned_cols=74  Identities=14%  Similarity=0.108  Sum_probs=52.3

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      .+|.|+|+|.+|...+..+...|. +|++++ ++++.+.+.+.|...   .     .+..+.+.      .+|+||.++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~-~~~~~~~~~~~g~~~---~-----~~~~~~~~------~~D~vi~~vp   67 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT-IGPVADELLSLGAVN---V-----ETARQVTE------FADIIFIMVP   67 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC-SSCCCHHHHTTTCBC---C-----SSHHHHHH------TCSEEEECCS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc-CHHHHHHHHHcCCcc---c-----CCHHHHHh------cCCEEEEECC
Confidence            479999999999999888888898 899998 887777666655321   1     22322221      4788888887


Q ss_pred             ChHHHHHHHH
Q 043260          278 VASLISEALE  287 (332)
Q Consensus       278 ~~~~~~~~~~  287 (332)
                      .+..+...+.
T Consensus        68 ~~~~~~~v~~   77 (295)
T 1yb4_A           68 DTPQVEDVLF   77 (295)
T ss_dssp             SHHHHHHHHH
T ss_pred             CHHHHHHHHh
Confidence            7655555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	332
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	6e-35
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	4e-33
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	7e-33
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	4e-31
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	8e-31
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	6e-24
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	6e-23
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	2e-22
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	1e-21
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	1e-20
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	5e-20
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	2e-19
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	3e-19
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	1e-18
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	4e-18
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	8e-17
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	1e-15
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	3e-15
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	2e-14
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	9e-14
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	2e-13
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	6e-13
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	4e-12
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	6e-12
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	1e-11
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	6e-11
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	8e-11
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	3e-09
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	1e-04
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	5e-04
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	8e-04

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  124 bits (311), Expect = 6e-35
 Identities = 71/197 (36%), Positives = 97/197 (49%), Gaps = 11/197 (5%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A V W   +P  +E I V PPKA EVR K+L + IC +D    K      FP +LGHE V
Sbjct: 11  AAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFPVILGHEAV 70

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHG-LMPDGSSRM 135
           G+VESIG  V  +K GD VIP F+ +C  C  C S  +N C K        LM D +SR 
Sbjct: 71  GVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRF 130

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
           + RG+ +Y++   ST TEY VV    V K+DP I+++                    ++ 
Sbjct: 131 TCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLD----------QIN 180

Query: 196 KGSSVAVFGLGAVGLGV 212
           K   +   G G   + +
Sbjct: 181 KAFELLSSGQGVRSIMI 197

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  119 bits (299), Expect = 4e-33
 Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 10/192 (5%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A + W  G P  +EEI+V PPKA EVR +++   +C TD+ ++      LFP VLGHE  
Sbjct: 11  AAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLGHECA 70

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLK-----YPFTFHGLMPDG 131
           G+VES+G  V   K GD VIP F  +C+ C+ C S + NLC K     YP     LM D 
Sbjct: 71  GIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDR 130

Query: 132 SSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKE 191
           +SR + +G+ +YH    S+ ++Y VV    + +VD   DL L    +  +     +    
Sbjct: 131 TSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPF----ESINDA 186

Query: 192 F-KVEKGSSVAV 202
              +++G S+  
Sbjct: 187 IDLMKEGKSIRT 198

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  118 bits (297), Expect = 7e-33
 Identities = 62/189 (32%), Positives = 90/189 (47%), Gaps = 2/189 (1%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV-LGHEG 75
           A V W   +P  +EEI+V+ P A E+R K++   +CHTD+             V LGHEG
Sbjct: 11  AAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEG 70

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSR 134
            G+VES+G  V E + G+ VIP FI +C EC  C S   N C+K        +M    +R
Sbjct: 71  AGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETR 130

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
            + +G+K+      ST ++Y VV+   V K+DPS+ L           S   A       
Sbjct: 131 FTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHG 190

Query: 195 EKGSSVAVF 203
           +   +V   
Sbjct: 191 KCIRTVLSL 199

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  114 bits (285), Expect = 4e-31
 Identities = 73/188 (38%), Positives = 101/188 (53%), Gaps = 2/188 (1%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRV-LGHEG 75
           A V W  G+P  +EEI+V PPKA EVR K++  ++CHTD  +  G        V LGH G
Sbjct: 9   AAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLG 68

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFH-GLMPDGSSR 134
            G+VES+G+ V +LK GD VIP +I +C EC+ C +   NLC K   T   GLMPDG+SR
Sbjct: 69  AGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSR 128

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
            + +G+ + H    ST +EY VV    V K+DP I +      +  +     A       
Sbjct: 129 FTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSG 188

Query: 195 EKGSSVAV 202
           +   +V  
Sbjct: 189 KSIRTVVK 196

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  113 bits (283), Expect = 8e-31
 Identities = 66/189 (34%), Positives = 95/189 (50%), Gaps = 4/189 (2%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A V W E +P+ +EE++V PPKA EVR KM+   IC +D     G  +   P + GHE  
Sbjct: 11  AAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAA 70

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRM 135
           G+VESIG+ V  ++ GD VIP F  +C +C  C     N CLK   +   G M DG+SR 
Sbjct: 71  GIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRF 130

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVE 195
           + RG+ ++H    ST ++Y VVD   V K+D +  L         +       +   +  
Sbjct: 131 TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPF-EKINEGFDLLRS- 188

Query: 196 KGSSVAVFG 204
            G S+    
Sbjct: 189 -GESIRTIL 196

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 94.5 bits (234), Expect = 6e-24
 Identities = 60/159 (37%), Positives = 94/159 (59%), Gaps = 3/159 (1%)

Query: 174 AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR 233
           +  + CG+++G+GAA    KV  GS+ AVFGLG VG   +   +  GA++IIG+  +  +
Sbjct: 5   SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK 64

Query: 234 KDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGK 293
             K    G T+ +NP D  +K I E++ E T+G GVDY  EC G    +  AL++T  G 
Sbjct: 65  FPKAIELGATECLNPKDY-DKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYCGS 122

Query: 294 GKVMAIGAAN-EAKVPLNFPAIALGRNLKGTIFGGIKTK 331
           G  + +G A+   ++PL+   +  GR+LKG++FGG K +
Sbjct: 123 GVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKGE 161

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 91.9 bits (227), Expect = 6e-23
 Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 29/214 (13%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGV 76
           A V   +G  ++++ +++  P+  EV  K++   +CHTD++          P VLGHEG 
Sbjct: 6   AAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAVLGHEGS 65

Query: 77  GMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-PFTFHGLMPDGSSRM 135
           G++E+IG  V EL+ GD V+ ++   C +C  C +     C ++    F G   +G+  +
Sbjct: 66  GIIEAIGPNVTELQVGDHVVLSYG-YCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHAL 124

Query: 136 SIRGQKLY--HIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFK 193
               Q +   H F  S+   Y +   N  VKV                            
Sbjct: 125 CTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQL------------------- 165

Query: 194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGI 227
                 V  +    +    +D  +      II I
Sbjct: 166 ------VKFYAFDEINQAAIDSRKGITLKPIIKI 193

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 90.3 bits (223), Expect = 2e-22
 Identities = 58/166 (34%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGI 227
           +        + CG+S+G+GAA K  KV+ GS+  VFGLG VGL V+   +  GA++IIGI
Sbjct: 1   AAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGI 60

Query: 228 DKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALE 287
           D N  + +K  A G T+ I+P D         V     G  V Y FE  G    + +AL 
Sbjct: 61  DLNKDKFEKAMAVGATECISPKDSTK--PISEVLSEMTGNNVGYTFEVIGHLETMIDALA 118

Query: 288 ATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGGIKTKS 332
           +  +  G  + +G    AK+    P +   GR  KG +FGG+K++ 
Sbjct: 119 SCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRD 164

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 88.5 bits (218), Expect = 1e-21
 Identities = 61/163 (37%), Positives = 83/163 (50%), Gaps = 3/163 (1%)

Query: 170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK 229
           +L     + CG+SSG+GAA    KV  GS+ AVFGLG VGL  +   +I GA++II ID 
Sbjct: 2   NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI 61

Query: 230 NPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEAT 289
           N  +  K +A G TD +NP +                 GVDY  +C G A  +  A++ T
Sbjct: 62  NGEKFPKAKALGATDCLNPRELDKPVQDV--ITELTAGGVDYSLDCAGTAQTLKAAVDCT 119

Query: 290 KLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGIKTKS 332
            LG G    +GA  +         I LGR++ GT FGG K+  
Sbjct: 120 VLGWGSCTVVGAKVDEMTIPTVDVI-LGRSINGTFFGGWKSVD 161

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 85.4 bits (210), Expect = 1e-20
 Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 15/175 (8%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSK-GFPLPLFPRVLGHEG 75
           AV  +   +P +  +I    P   +V+ ++ Y  +CH+D+   +  +   ++P V GHE 
Sbjct: 3   AVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEI 62

Query: 76  VGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSR 134
           VG V ++GD+V++   GD+V +   +  C+ CE C   + N C     T++   PD    
Sbjct: 63  VGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPG- 121

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKV-DPSIDLSLAGFLSCGYSSGFGAA 188
                       T    ++ +VV   YV+++    I++  A  ++  Y       
Sbjct: 122 -----------HTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRGD 165

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 83.8 bits (206), Expect = 5e-20
 Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 23/175 (13%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLGHE 74
           A V    G P ++EE++V  P   +V  K+  + +CHTD+ +++G     P  P + GHE
Sbjct: 8   AAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHE 67

Query: 75  GVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSS 133
           GVG V ++G  V  +KEGD V IP     C  CE+C +    LC                
Sbjct: 68  GVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN----------- 116

Query: 134 RMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAA 188
                              EY++ D NYV  +  ++  ++        +      
Sbjct: 117 ---------TGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQM 162

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 82.3 bits (202), Expect = 2e-19
 Identities = 64/162 (39%), Positives = 93/162 (57%), Gaps = 3/162 (1%)

Query: 171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN 230
           L     + CG+S+G+G+A K  KV +GS+ AVFGLG VGL V+   +  GAA+IIG+D N
Sbjct: 3   LEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN 62

Query: 231 PCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATK 290
             +  K +  G T+ +NP D   K I E++ EM++G GVD+ FE  G    +  AL   +
Sbjct: 63  KDKFAKAKEVGATECVNPQDYK-KPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQ 120

Query: 291 LGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGGIKTK 331
              G  + +G   +++     P + L GR  KG IFGG K+K
Sbjct: 121 EAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSK 162

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.2 bits (202), Expect = 3e-19
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 17/180 (9%)

Query: 28  KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG-FPLPLFPRVLGHEGVGMVESIGDEV 86
           K  +   +P    ++  K+    +C +D+  + G +     P V+GHE VG V  +G + 
Sbjct: 22  KKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKS 81

Query: 87  KE-LKEGD-IVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYH 144
              LK G  + +   +  C EC+ C ++    C K+  T+     D              
Sbjct: 82  NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYED-------------G 128

Query: 145 IFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFG 204
             +      Y+ V  ++VV +  +I +        G    F    ++  V    ++  + 
Sbjct: 129 YVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAF-ERMEKGDVRYRFTLVGYD 187

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 79.9 bits (196), Expect = 1e-18
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 5/165 (3%)

Query: 169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGID 228
           + + L G L CG  +G GA     KV   SS   +G GAVGL  +  A++ GA+ II +D
Sbjct: 1   VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVD 60

Query: 229 KNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEA 288
               R +  +  G T  IN   +        +KE+T G GV++  E TG   ++ + ++A
Sbjct: 61  IVESRLELAKQLGATHVINSKTQ---DPVAAIKEITDG-GVNFALESTGSPEILKQGVDA 116

Query: 289 TK-LGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGIKTKS 332
              LGK  V+                +  G+ + G + G    K 
Sbjct: 117 LGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKK 161

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 4e-18
 Identities = 70/160 (43%), Positives = 92/160 (57%), Gaps = 3/160 (1%)

Query: 171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN 230
           L     L CG S+G+GAA    K+E GS  AVFGLG VGL V+   ++ GA++IIG+D N
Sbjct: 3   LDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN 62

Query: 231 PCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATK 290
             +  + + FG T+ INP D  +K I E++ EMT G GVDY FEC G   ++  ALEA  
Sbjct: 63  KDKFARAKEFGATECINPQDF-SKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACH 120

Query: 291 LGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGGIK 329
            G G  + +G A   +     P   + GR  KGT FGG K
Sbjct: 121 KGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWK 160

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 75.1 bits (183), Expect = 8e-17
 Identities = 66/161 (40%), Positives = 91/161 (56%), Gaps = 2/161 (1%)

Query: 171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN 230
           L     L CG S+GFGAA    KVE GS+ AVFGLGAVGL  +      GA +II +D N
Sbjct: 3   LDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN 62

Query: 231 PCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATK 290
           P + +K + FG TDF+NP+D       +++ +MT+G GVD+  EC G   ++  ALE+  
Sbjct: 63  PDKFEKAKVFGATDFVNPNDHSEPIS-QVLSKMTNG-GVDFSLECVGNVGVMRNALESCL 120

Query: 291 LGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGIKTK 331
            G G  + +G  +   V      +  GR  KG++FGG K K
Sbjct: 121 KGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFKGK 161

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 1e-15
 Identities = 41/197 (20%), Positives = 63/197 (31%), Gaps = 28/197 (14%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL----SSKGFPLPLFPRVLG 72
           ++V  G G+  ++E   +  P   EV  +M    IC +DV        G  +   P VLG
Sbjct: 10  SLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLG 68

Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
           HE  G VE +G  VK LK GD V           E C     NL     F          
Sbjct: 69  HEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATP------ 122

Query: 133 SRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
                             +  +   +A +  K+  ++   +              A++ F
Sbjct: 123 -------------PDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPLEK---ALEAFETF 166

Query: 193 KVEKGSSVAVFGLGAVG 209
           K   G  + +       
Sbjct: 167 KKGLGLKIML-KCDPSD 182

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 70.6 bits (172), Expect = 3e-15
 Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 27/195 (13%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDV-LSSKGFPLPLFPRVLGHEG 75
           A+V     +P   +E ++       +  ++L A +C +DV +     P    P +LGHEG
Sbjct: 7   AMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEG 66

Query: 76  VGMVESIGDEVKELKEGD-----IVIPTFIGECRECENC-TSEMANLCLKYPFTFHGLMP 129
            G V  +  E ++L         +++      C EC  C  S+   LC       +G+  
Sbjct: 67  AGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNR--KVYGINR 124

Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDA-NYVVKVDPSIDLSLAGFLSCGYSSGFGAA 188
             S    +RG            + ++V+D    V+KV   I   L   L          A
Sbjct: 125 GCSEYPHLRG----------CYSSHIVLDPETDVLKVSEKITHRLP--LKEAN-----KA 167

Query: 189 WKEFKVEKGSSVAVF 203
            +  +  +   V ++
Sbjct: 168 LELMESREALKVILY 182

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 68.5 bits (166), Expect = 2e-14
 Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 25/192 (13%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG----FPLPLFPRVLG 72
           + V + + +  ++E+  +  PK  EV  +M Y  IC +DV   +       +   P V+G
Sbjct: 4   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62

Query: 73  HEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGS 132
           HE  G V  +G  VK LK+GD V       CR C+ C     NLC    F          
Sbjct: 63  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC--------- 113

Query: 133 SRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEF 192
                             +  Y V  A++  K+  + ++      S         A++  
Sbjct: 114 ----------ATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVD-AFEAA 162

Query: 193 KVEKGSSVAVFG 204
           + +  +++ V  
Sbjct: 163 RKKADNTIKVMI 174

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 66.5 bits (161), Expect = 9e-14
 Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGID 228
           + L  A  ++   ++GF  A +   +E GSSV V G+GAVGL  +  A+++GA +IIG+ 
Sbjct: 1   MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG 59

Query: 229 KNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEA 288
             P   +  + +G TD +N  +   +   + V ++T+G GVD      G +  +S+A++ 
Sbjct: 60  SRPICVEAAKFYGATDILNYKNGHIE---DQVMKLTNGKGVDRVIMAGGGSETLSQAVKM 116

Query: 289 TKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKG-TIFGGI 328
            K G G +  I     +   L  P +  G  +   TI GG+
Sbjct: 117 VKPG-GIISNINYHG-SGDALLIPRVEWGCGMAHKTIKGGL 155

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 65.4 bits (158), Expect = 2e-13
 Identities = 45/196 (22%), Positives = 67/196 (34%), Gaps = 32/196 (16%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKG---------FPLPLF 67
           AV     G+P  ++EI V  PK  +V  K+  A +CH+DV   +G               
Sbjct: 3   AVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKL 62

Query: 68  PRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGL 127
           P  LGHE  G +E +GDEV    +GD+V          C  C     +LC          
Sbjct: 63  PVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLC---------- 112

Query: 128 MPDGSSRMSIRGQKLYHIFTCSTMTEYMVV-DANYVVKVDPSIDLSLAGFLSCGYSSGFG 186
                        +   I       EY++V    Y+ K+     +          +    
Sbjct: 113 ----------DSPRWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAI- 161

Query: 187 AAWKEFKVEKGSSVAV 202
              + FK   G  V +
Sbjct: 162 DNLENFKA-IGRQVLI 176

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 63.9 bits (154), Expect = 6e-13
 Identities = 37/191 (19%), Positives = 65/191 (34%), Gaps = 27/191 (14%)

Query: 17  AVVCWGEGEPWKVEEIQV-EPPKATEVRFKMLYASICHTDVLSSKG----FPLPLFPRVL 71
           A       +P ++E++         +V  ++  A +CHTD+   +G       P  P  L
Sbjct: 2   AARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTL 61

Query: 72  GHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDG 131
           GHE VG +E + + V+ L++GD VI         C  C +     C    F         
Sbjct: 62  GHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGL------ 115

Query: 132 SSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKE 191
                                E+M      V+K+   + + +        +       K 
Sbjct: 116 --------------NIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLEK- 160

Query: 192 FKVEKGSSVAV 202
            +V  G +V +
Sbjct: 161 GEV-LGRAVLI 170

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 61.5 bits (148), Expect = 4e-12
 Identities = 47/193 (24%), Positives = 69/193 (35%), Gaps = 31/193 (16%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGF--PLPLFPRVLGHE 74
           A V     EP K++E++       EV  ++    +CHTD+ ++ G     P  P + GHE
Sbjct: 3   AAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHE 62

Query: 75  GVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSS 133
           GVG+VE +G  V  LK GD V IP     C  C+ C S    LC                
Sbjct: 63  GVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKN----------- 111

Query: 134 RMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGF--LSCGYSSGFGAAWKE 191
                              EY    A+YVVK+  +  + +     ++  +          
Sbjct: 112 ---------AGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLEKINEVFDRMLKGQI-- 160

Query: 192 FKVEKGSSVAVFG 204
                G  V    
Sbjct: 161 ----NGRVVLTLE 169

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.5 bits (148), Expect = 6e-12
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 4/163 (2%)

Query: 170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK 229
           DL +     C  ++ + A  +  +   G +V + G G +GL  +  AR  GA  +I I  
Sbjct: 2   DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG 61

Query: 230 NPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEAT 289
           +P R    E  G    +N  +   +   + + ++THG G D+  E TG +  + E  E  
Sbjct: 62  SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELL 121

Query: 290 KLGKGKVMAIG-AANEAKVPLNFPAIALGRN--LKGTIFGGIK 329
           + G G     G A  +  VP       + +N   KG       
Sbjct: 122 RRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTS 163

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 60.7 bits (146), Expect = 1e-11
 Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 25/214 (11%)

Query: 17  AVVCWGEGEPWKVEEIQV-------EPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPR 69
            VV  G G+  +V++I                V  K++  +IC +D    +G        
Sbjct: 4   GVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGL 62

Query: 70  VLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMP 129
           VLGHE  G V   G +V+ L+ GD+V   F   C  C +C      +CL       G   
Sbjct: 63  VLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAY 122

Query: 130 DGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN--YVVKVDPSIDLSLAGFLSCGYSSGFGA 187
                                  EY++V      ++K+           ++        +
Sbjct: 123 GYVDMGD----------WTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVIS 172

Query: 188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA 221
                    G     F  G     V+D  +   A
Sbjct: 173 LDD-APRGYG----EFDAGVPKKFVIDPHKTFSA 201

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 6e-11
 Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 7/153 (4%)

Query: 172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP 231
           +L   LS G       A +   V  G  V V G G +G+  +  A+  GAA+++  D + 
Sbjct: 7   ALIEPLSVGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA 61

Query: 232 CRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKL 291
            R  K +  G    +    E  + I+    E   G   +   ECTG  + I   + AT+ 
Sbjct: 62  TRLSKAKEIGADLVLQISKESPQEIAR-KVEGQLGCKPEVTIECTGAEASIQAGIYATRS 120

Query: 292 GKGKVMAIGAANEAKVPLNFPAIALGRNLKGTI 324
           G   V+    +    VPL   A     ++KG  
Sbjct: 121 GGTLVLVGLGSEMTTVPLL-HAAIREVDIKGVF 152

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 58.3 bits (140), Expect = 8e-11
 Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 20/144 (13%)

Query: 174 AGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR 233
              LS    +G+  A     V  GS+V V G G VGL     AR+ GAA +I  D NP R
Sbjct: 4   LTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR 62

Query: 234 KDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGV--------------- 278
               +A G        D P   + E +  +     VD   +  G                
Sbjct: 63  LAHAKAQGFEIADLSLDTP---LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAP 119

Query: 279 ASLISEALEATKLGKGKVMAIGAA 302
           A++++  ++ T++  GK+   G  
Sbjct: 120 ATVLNSLMQVTRVA-GKIGIPGLY 142

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 53.4 bits (127), Expect = 3e-09
 Identities = 34/197 (17%), Positives = 57/197 (28%), Gaps = 32/197 (16%)

Query: 17  AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSK-GFPLPLFPRVLGHEG 75
                G  +     E +     + +   + L  S C +D+ +   G        +LGHE 
Sbjct: 3   GFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEA 61

Query: 76  VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRM 135
           VG V  +G EVK+ K GD VI              +            +           
Sbjct: 62  VGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWK---------- 111

Query: 136 SIRGQKLYHIFTCSTMTEYMVVDA--NYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFK 193
                  +  F      EY  V+     +  +   +DLS    ++  Y  GF        
Sbjct: 112 -------FSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKL--VTHVY-HGFDHI----- 156

Query: 194 VEKGSSVAVFGLGAVGL 210
                ++ +       L
Sbjct: 157 ---EEALLLMKDKPKDL 170

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 6/120 (5%)

Query: 17  AVVCWGEGEPW--KVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHE 74
           A V       +   V+ I ++     +V  ++ Y+S+ + D L+S      +        
Sbjct: 6   AFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPG 65

Query: 75  GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSR 134
                  +  +    +EGD VI T            SE A L  ++       +P G  R
Sbjct: 66  IDLAGVVVSSQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVP----LPKGLER 121

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 7/39 (17%), Positives = 15/39 (38%)

Query: 17 AVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTD 55
          A V    G P ++ ++     +  EV  ++    +   D
Sbjct: 3  AWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFAD 41

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.5 bits (86), Expect = 8e-04
 Identities = 23/199 (11%), Positives = 47/199 (23%), Gaps = 47/199 (23%)

Query: 17  AVVC--WGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHE 74
           A+      +     V+ I  E      V  K+ Y+ I + D L+ K     +    L   
Sbjct: 6   ALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLIL- 64

Query: 75  GVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSR 134
                                     G      +      +  +   +        G   
Sbjct: 65  ---------------------GIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGG--- 100

Query: 135 MSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKV 194
                           ++EY  V  +++V +  ++ L  A                  + 
Sbjct: 101 ----------------LSEYASVPGDWLVPLPQNLSLKEAMVDQL---LTIVDREVSLEE 141

Query: 195 EKGSSVAVFGLGAVGLGVM 213
             G+   +      G  V+
Sbjct: 142 TPGALKDILQNRIQG-RVI 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	100.0
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	100.0
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	100.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	100.0
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	100.0
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	100.0
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	100.0
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	100.0
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	100.0
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.96
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.95
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.95
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.95
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.94
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.94
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.94
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.94
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.94
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.94
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.93
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.93
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.92
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.92
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.92
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.92
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.92
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.92
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.92
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.92
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.91
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.91
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.91
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.91
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.91
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.91
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.91
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.9
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.89
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.89
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.87
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.85
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.84
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.83
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.61
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.59
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.43
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.05
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.03
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.94
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.9
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.89
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.84
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.74
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.69
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.65
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.65
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.6
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.59
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.57
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.57
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.56
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.51
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.49
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.49
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.48
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.43
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.43
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.42
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.42
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.42
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.41
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.39
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.35
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.33
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.32
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.32
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.32
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.31
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.31
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.27
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.27
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.27
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.27
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.26
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.25
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.24
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.23
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.23
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.23
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.2
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.2
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.19
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.18
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.17
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.15
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.14
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.13
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.13
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.13
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.1
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.09
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.08
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.08
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.08
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.06
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.06
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.06
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.05
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.03
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.02
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.96
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.96
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.95
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.92
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	96.92
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.92
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.91
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.9
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.89
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.89
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.88
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.86
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.86
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.84
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.84
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.82
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.76
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.74
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.71
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.71
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.68
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.68
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.63
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.59
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.56
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.53
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.45
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.44
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.41
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.38
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.33
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.28
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.27
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.21
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.18
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.17
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.14
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	96.05
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.05
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.93
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	95.86
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.85
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	95.84
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.83
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.8
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.78
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	95.65
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	95.64
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.61
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	95.52
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.4
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	95.4
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.34
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.32
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.32
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	95.3
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	95.29
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.29
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.28
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.19
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	95.19
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.13
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.13
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	95.07
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	95.04
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	95.01
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.0
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	94.95
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	94.88
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.87
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.74
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.73
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.73
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	94.69
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	94.68
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.65
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	94.64
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.63
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.62
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.61
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	94.6
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.59
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.56
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.56
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	94.48
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.41
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.37
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.31
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	94.3
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.29
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.27
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	94.27
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.27
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.25
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.24
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.16
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.14
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.13
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.09
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.08
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.96
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	93.92
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.85
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	93.81
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.78
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	93.72
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.67
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.67
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.63
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.62
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.57
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	93.54
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	93.52
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	93.49
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	93.46
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.44
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.41
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.41
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.39
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	93.39
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.37
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	93.36
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	93.35
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	93.34
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.3
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	93.3
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.29
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.23
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.14
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	93.13
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	93.11
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.02
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.01
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	92.99
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	92.98
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	92.98
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	92.97
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	92.96
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	92.91
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.88
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.86
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	92.78
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	92.77
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	92.75
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	92.65
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	92.63
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	92.58
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.49
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	92.47
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	92.47
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.42
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	92.41
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	92.37
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	92.21
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.12
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	92.12
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	92.11
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	91.98
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	91.97
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	91.95
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	91.91
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	91.88
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.88
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	91.86
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.81
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.74
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	91.73
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	91.72
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	91.72
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.71
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.62
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	91.62
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	91.56
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	91.54
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	91.5
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.5
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	91.5
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.42
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.42
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.37
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	91.29
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.21
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	91.15
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.97
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	90.93
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	90.88
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	90.82
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	90.82
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.8
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	90.78
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	90.67
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	90.66
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	90.66
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.62
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	90.62
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	90.49
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	90.38
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	90.24
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	90.23
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	90.15
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	90.08
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	90.01
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	90.01
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	89.98
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.84
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	89.82
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.79
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	89.68
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	89.63
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	89.34
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	89.32
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	89.27
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.21
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.18
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	89.06
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	88.93
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	88.66
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	88.61
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.53
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	88.41
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	88.32
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	88.26
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.08
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	88.05
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	87.93
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.78
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	87.73
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.64
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	87.49
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	87.4
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	87.35
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	87.25
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.05
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	86.92
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	86.73
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.65
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	86.55
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	86.45
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	86.43
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	86.05
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	86.0
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	85.97
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	85.94
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	85.91
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	85.85
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	85.79
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.76
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	85.66
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	85.57
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	85.52
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	85.51
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.43
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	85.43
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	85.37
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	84.98
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	84.98
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	84.92
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	84.67
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	84.4
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	84.38
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	83.74
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	83.53
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	83.49
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	83.43
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.98
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	82.95
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	82.79
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	82.6
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.48
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	82.37
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	82.33
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	82.29
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	82.23
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	82.2
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.0
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	81.86
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.82
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	81.53
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	81.52
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.46
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	81.44
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	81.34
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	81.23
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	81.16
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.71
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	80.66
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	80.59
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	80.33
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	80.31
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	80.3
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	80.21
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	80.14
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	80.02

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=7e-40  Score=281.60  Aligned_cols=194  Identities=34%  Similarity=0.514  Sum_probs=181.0

Q ss_pred             cccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCC
Q 043260           10 LKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        10 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      +.+|++||++++++++++++++++.|+|++|||||||.++|||++|++ +.+..+...+|.++|||++|+|+++|+++++
T Consensus         4 ~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v~~   83 (199)
T d1cdoa1           4 GKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVTE   83 (199)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCCce
Confidence            567899999999999899999999999999999999999999999999 8887777789999999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      +++||||++.+..+|+.|.+|++|+++.|++..... .+...++...+..+|...++....|+||||+.+++++++++|+
T Consensus        84 ~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~iP~  163 (199)
T d1cdoa1          84 FQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDP  163 (199)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCT
T ss_pred             ecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEECCC
Confidence            999999999999999999999999999999987655 5667777788888888999888889999999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEE
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVF  203 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~  203 (332)
                      +++++++|++.+++.|+++++....+.+.|++|||+
T Consensus       164 ~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         164 SVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             TSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            999999999999999999999777888999999984

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=100.00  E-value=3.4e-38  Score=270.36  Aligned_cols=193  Identities=39%  Similarity=0.640  Sum_probs=176.6

Q ss_pred             ccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCC
Q 043260           11 KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKEL   89 (332)
Q Consensus        11 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~   89 (332)
                      -+|+|||+++++++++|+++++|.|+|+++||||||+++|||++|++ +.|.++...+|.++|||++|+|+++|++|+++
T Consensus         3 ~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~~   82 (197)
T d2fzwa1           3 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTKL   82 (197)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             CceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCceec
Confidence            47899999999999999999999999999999999999999999999 88887778899999999999999999999999


Q ss_pred             CCCCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCC
Q 043260           90 KEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        90 ~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      ++||||++.+...|+.|.+|+.|+++.|++..... .+...+....+..+|.++++..+.|+|+||+++++.+++++|++
T Consensus        83 ~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp~~  162 (197)
T d2fzwa1          83 KAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPL  162 (197)
T ss_dssp             CTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTT
T ss_pred             CCCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEechHHEEECCCC
Confidence            99999999999999999999999999999976443 56777777778888888888888899999999999999999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEE
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVF  203 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~  203 (332)
                      ++++++|.+.+++.|++.++.....-+.+++|||+
T Consensus       163 l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         163 IKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             SCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            99999999999999999988555555788899885

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=100.00  E-value=1.9e-37  Score=267.12  Aligned_cols=192  Identities=36%  Similarity=0.602  Sum_probs=170.3

Q ss_pred             ccccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCC
Q 043260            9 FLKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus         9 ~~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      ...+|+|||+++++++++++++++|.|+|+++||||||.++|||++|++ +.|.++ ..+|.++|||++|+|+++|++|+
T Consensus         3 ~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~-~~~P~v~GHE~~G~V~~vG~~V~   81 (202)
T d1e3ia1           3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKK-ALFPVVLGHECAGIVESVGPGVT   81 (202)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSC-CCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeecc-cccccccccccceEEeeecCCce
Confidence            4678999999999999899999999999999999999999999999999 888665 57899999999999999999999


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCcccc-----ccccCCCCCcccccccceecccccCCceeeEEecCCce
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-----HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYV  162 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-----~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v  162 (332)
                      ++++||||++.+...|+.|.+|++|+++.|++....-     .+...++...+..+|...++....|+|+||+++++.++
T Consensus        82 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l  161 (202)
T d1e3ia1          82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANL  161 (202)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             eccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhE
Confidence            9999999999999999999999999999999886441     12334555667778888888888899999999999999


Q ss_pred             EEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEEC
Q 043260          163 VKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFG  204 (332)
Q Consensus       163 ~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G  204 (332)
                      +++|++++++.++++.+++.++++++.   .+++|++|.|+.
T Consensus       162 ~~lP~~~~~~~~~~~~~~~~~~~~a~~---~~k~G~~V~vi~  200 (202)
T d1e3ia1         162 ARVDDEFDLDLLVTHALPFESINDAID---LMKEGKSIRTIL  200 (202)
T ss_dssp             EECCTTSCGGGGEEEEEEGGGHHHHHH---HHHTTCCSEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEEE
Confidence            999999999999998888888888762   357899998863

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=9.4e-37  Score=257.55  Aligned_cols=169  Identities=26%  Similarity=0.406  Sum_probs=150.2

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC---CCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP---LPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      +.|++++++++ |+++++++|+|+++|||||+++++||++|++ +.+...   ...+|.++|||++|+|+++|+++++|+
T Consensus         2 ~maAVl~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~   80 (178)
T d1e3ja1           2 NLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLK   80 (178)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCC
T ss_pred             ceEEEEEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCC
Confidence            34555778876 9999999999999999999999999999998 665332   256789999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccc-cCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGL-MPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSI  169 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~  169 (332)
                      +||||++.+..+|+.|++|+.|+.++|++..+.  |. ..+                  |+|+||+.+++++++++|+++
T Consensus        81 ~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~--~~~~~~------------------G~~aey~~v~~~~~~~iP~~~  140 (178)
T d1e3ja1          81 KGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC--ATPPDD------------------GNLARYYVHAADFCHKLPDNC  140 (178)
T ss_dssp             TTCEEEECCEECCSSSHHHHTTCGGGCTTCEET--TBTTBC------------------CSCBSEEEEEGGGEEECCTTC
T ss_pred             CCCEEEECcccccCCccccccCCccccccccce--eccccc------------------cccceeeeecccceeeCCCCC
Confidence            999999999999999999999999999988765  33 233                  359999999999999999999


Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL  205 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~  205 (332)
                      +++++|.+++++.|||+++ +.+++++|++|+|+|+
T Consensus       141 ~~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         141 NVKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             CCGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             CHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            9999999999999999987 6889999999999974

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=3.1e-36  Score=253.66  Aligned_cols=172  Identities=28%  Similarity=0.460  Sum_probs=155.2

Q ss_pred             cccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCC
Q 043260           10 LKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        10 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      ++|.||||++++++++++++++++.|+|++|||||||++++||++|++ +.|.++. ..+|.++|||++|+|+++|++++
T Consensus         1 ~~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~   80 (175)
T d1llua1           1 TLPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVT   80 (175)
T ss_dssp             CCCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCC
T ss_pred             CcchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCcc
Confidence            468999999999999889999999999999999999999999999999 8887754 67899999999999999999999


Q ss_pred             CCCCCCEEEeec-ccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcC
Q 043260           88 ELKEGDIVIPTF-IGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVD  166 (332)
Q Consensus        88 ~~~vGdrV~~~~-~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP  166 (332)
                      ++++||||+..+ ...|+.|.+|+.|++++|++....  |+..+|+                  |+||+.+++++++++|
T Consensus        81 ~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~--G~~~~gg------------------~aey~~v~~~~~~~iP  140 (175)
T d1llua1          81 RVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNT--GYSVNGG------------------YAEYVLADPNYVGILP  140 (175)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEB--TTTBCCS------------------SBSEEEECTTTSEECC
T ss_pred             ccccCCEEEeccccccCCccccccCCccccccccccc--ccccccc------------------cceEEEechHHEEECC
Confidence            999999998765 467999999999999999998877  7777775                  9999999999999999


Q ss_pred             CCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEE
Q 043260          167 PSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVF  203 (332)
Q Consensus       167 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~  203 (332)
                      ++++++.++++.+++.|+++++ +. ...+|++|||+
T Consensus       141 d~l~~~~a~~~~~~~~t~~~~~-~~-g~~~G~~VLVl  175 (175)
T d1llua1         141 KNVKATIHPGKLDDINQILDQM-RA-GQIEGRIVLEM  175 (175)
T ss_dssp             TTCCCCEEEECGGGHHHHHHHH-HT-TCCSSEEEEEC
T ss_pred             CCCChhHHHHHHhHHHHHHHHH-Hh-CCCCCCEEEeC
Confidence            9999998888888999999876 43 34579999984

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=4.8e-36  Score=256.18  Aligned_cols=189  Identities=27%  Similarity=0.515  Sum_probs=156.3

Q ss_pred             cceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 043260           12 IYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |++|+|+++.+.++++++++++.|+|++|||||||.++|||++|++ +.|.++ .++|.++|||++|+|+++|++|++|+
T Consensus         1 ~k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~-~~~P~i~GHE~~G~V~~vG~~v~~~~   79 (194)
T d1f8fa1           1 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQ   79 (194)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             CceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhccc-ccCCcccccceEEEeeecCccceeEc
Confidence            5789999999999899999999999999999999999999999999 888765 47899999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCcc-ccccccCCCCCccccc--ccceecccccCCceeeEEecCCceEEcCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPF-TFHGLMPDGSSRMSIR--GQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~-~~~g~~~~g~~~~~~~--~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      +||||+. ++.+|++|.+|++|++++|++... ...|...+|+..+...  +....+....|+|+||.+++..+++++|+
T Consensus        80 vGDrVv~-~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~  158 (194)
T d1f8fa1          80 VGDHVVL-SYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK  158 (194)
T ss_dssp             TTCEEEE-CCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred             cCceeee-ecccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECCC
Confidence            9999955 556899999999999999998642 2245555554322221  22233455668999999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEE
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGI  227 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~  227 (332)
                      +++++++                         +++.|+|++|++++|+++.+|.++|+++
T Consensus       159 ~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         159 DFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             TCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            9886543                         3456779999999999999998667664

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=2.2e-36  Score=253.51  Aligned_cols=165  Identities=24%  Similarity=0.362  Sum_probs=152.1

Q ss_pred             eeEEEecCCCCeEEEEEecCCC-CCCeEEEEEeeeecCccccc-ccCCCCC---CCCCcccccceeEEEEEeCCCCCCCC
Q 043260           16 AAVVCWGEGEPWKVEEIQVEPP-KATEVRFKMLYASICHTDVL-SSKGFPL---PLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        16 ~a~~~~~~~~~l~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~-~~g~~~~---~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      ||+++++++++|++++++.|++ +++||||||.+++||++|++ +.|..+.   ..+|.++|||++|+|+++|+++++++
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   80 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE   80 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence            7999999999999999999986 68999999999999999998 8776543   56899999999999999999999999


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||||++.+..+|+.|.+|++|++++|++..+.  |+..+|+                  |+||+.+++++++++|++++
T Consensus        81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~--g~~~~G~------------------~aey~~v~~~~~~~iP~~~~  140 (171)
T d1h2ba1          81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEFP--GLNIDGG------------------FAEFMRTSHRSVIKLPKDVR  140 (171)
T ss_dssp             TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCB--TTTBCCS------------------SBSEEEECGGGEEECCTTCC
T ss_pred             CCCEEEEcCccCCCCcccccccccccccccccc--eeecccc------------------cceeeeehhhcceecCCCCC
Confidence            999999999999999999999999999998876  7777765                  99999999999999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEE
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAV  202 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV  202 (332)
                      ++.++++.+++.|||+++ +.+++ .|++|||
T Consensus       141 ~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         141 VEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             CCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             HHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            998988889999999998 56777 8999998

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=100.00  E-value=4.7e-36  Score=257.14  Aligned_cols=191  Identities=38%  Similarity=0.621  Sum_probs=164.9

Q ss_pred             cccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCC
Q 043260           10 LKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        10 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      ....||||+++++++++++++++++|+|+++||||||.++|||++|++ +.|.++ ..+|.++|||++|+|+++|+++++
T Consensus         4 ~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~-~~~P~i~GHE~~G~Vv~~G~~v~~   82 (198)
T d1p0fa1           4 GKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAGVTC   82 (198)
T ss_dssp             TSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeeccc-cccccccceeeeeeeeecCccccc
Confidence            456799999999999889999999999999999999999999999999 888765 478999999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      +++||||++.+..+|+.|.+|++|++++|++..... .|...++...+...+...++....|+|+||+.+++..++++|+
T Consensus        83 ~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip~  162 (198)
T d1p0fa1          83 VKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDP  162 (198)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECT
T ss_pred             CcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEECCC
Confidence            999999999999999999999999999999987543 4566666777777888887777789999999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHH
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLG  211 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~  211 (332)
                      +++.+.++...+.+.          .+.++++|||+|+|++|++
T Consensus       163 ~~~~~~~~~~~~~~~----------~v~~~~~vlv~G~G~iGl~  196 (198)
T d1p0fa1         163 KINVNFLVSTKLTLD----------QINKAFELLSSGQGVRSIM  196 (198)
T ss_dssp             TSCGGGGEEEEECGG----------GHHHHHHHTTTSSCSEEEE
T ss_pred             CCCHHHHHHhhcchh----------hcCCCCEEEEECCCcceEE
Confidence            999877665443332          2334456888898887753

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.9e-35  Score=248.00  Aligned_cols=175  Identities=23%  Similarity=0.294  Sum_probs=148.6

Q ss_pred             ccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCC--
Q 043260           11 KIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVK--   87 (332)
Q Consensus        11 ~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~--   87 (332)
                      |.++|||++++++++++++++++.|+|+++||||||.++|||++|++ +.|.++..++|+++|||++|+|+++|++|+  
T Consensus         1 m~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~   80 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDL   80 (184)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCT
T ss_pred             CCceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEecccccc
Confidence            57899999999999999999999999999999999999999999999 999887778999999999999999999986  


Q ss_pred             ---CCCCCCEEEeecccCCCCCcccccCCcc-cCCCCccccccccCCCCCcccccccceecccccCCceeeEEec-CCce
Q 043260           88 ---ELKEGDIVIPTFIGECRECENCTSEMAN-LCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVD-ANYV  162 (332)
Q Consensus        88 ---~~~vGdrV~~~~~~~c~~c~~c~~g~~~-~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~-~~~v  162 (332)
                         .+++||||++.+..+|+.|.+|+.|.+. .|++....  |+...-. .+         ....|+|+||+.++ .+++
T Consensus        81 ~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~--G~~~~~~-~~---------~~~~Gg~ae~~~v~~~~~v  148 (184)
T d1vj0a1          81 NGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVY--GINRGCS-EY---------PHLRGCYSSHIVLDPETDV  148 (184)
T ss_dssp             TSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEET--TTTCCSS-ST---------TCCCSSSBSEEEECTTCCE
T ss_pred             ccccccceeeeEeccccccccChhHhCccccccCCCceee--ccCCCCC-CC---------CCcceeCcCcEEechhHcE
Confidence               4689999999999999999999999976 48887655  5432110 00         11246799999996 5799


Q ss_pred             EEcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEEC
Q 043260          163 VKVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFG  204 (332)
Q Consensus       163 ~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G  204 (332)
                      +++|+++++++      ++.+|++++ +.+++++|++|||+-
T Consensus       149 ~~ip~~l~~~~------pl~~A~~a~-~~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         149 LKVSEKITHRL------PLKEANKAL-ELMESREALKVILYP  183 (184)
T ss_dssp             EEECTTCCEEE------EGGGHHHHH-HHHHHTSCSCEEEEC
T ss_pred             EECCCCCCHHH------HHHHHHHHH-HHhCCCcCCEEEEee
Confidence            99999999653      456788877 778999999999973

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=5.6e-35  Score=250.66  Aligned_cols=191  Identities=35%  Similarity=0.587  Sum_probs=166.9

Q ss_pred             cccceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCC
Q 043260           10 LKIYYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        10 ~~~~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      ...++|||++++++++++++++++.|+|+++||||||.++|||++|++ +.|.++ ..+|.++|||++|+|+++|+++++
T Consensus         4 ~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~-~~~P~i~GHE~~G~Vv~vG~~v~~   82 (198)
T d2jhfa1           4 GKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLV-TPLPVIAGHEAAGIVESIGEGVTT   82 (198)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSC-CCSSBCCCCSEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCcc-cccceecccceeEEEEecCccccC
Confidence            467899999999999899999999999999999999999999999999 888766 468999999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      +++||||++.+..+|+.|.+|++|+++.|++..... .|...++...+..++..+++....|+|+||+++++.+++++|+
T Consensus        83 ~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~~p~  162 (198)
T d2jhfa1          83 VRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDA  162 (198)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCT
T ss_pred             cCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeEECCC
Confidence            999999999999999999999999999999987654 5666667777788888888888889999999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEEC
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFG  204 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G  204 (332)
                      +++++.++....++.....+   ...+++|++|+|+.
T Consensus       163 ~~~~e~l~~~~~~~~~v~~g---~~~l~~G~~VaVi~  196 (198)
T d2jhfa1         163 AFALDPLITHVLPFEKINEG---FDLLRSGESIRTIL  196 (198)
T ss_dssp             TSCCGGGEEEEEEGGGHHHH---HHHHHTTCCSEEEE
T ss_pred             CCCHHHHHHHHHHHHhhhhC---CceeeCCCEEEEEE
Confidence            99987776655554443332   23468999998863

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-35  Score=248.47  Aligned_cols=180  Identities=19%  Similarity=0.267  Sum_probs=152.2

Q ss_pred             cccceeeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCC
Q 043260           10 LKIYYAAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEV   86 (332)
Q Consensus        10 ~~~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   86 (332)
                      +.|.+|||+++..+.+.  +++.+++.++++++||||||+++|||++|++ +.|.++...+|+++|||++|+|+++|+++
T Consensus         2 ~~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~v   81 (192)
T d1piwa1           2 SYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKS   81 (192)
T ss_dssp             CTTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTC
T ss_pred             CCCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhccccc
Confidence            45889999999887653  6777877777899999999999999999999 88887778899999999999999999998


Q ss_pred             -CCCCCCCEEEeecc-cCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEE
Q 043260           87 -KELKEGDIVIPTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVK  164 (332)
Q Consensus        87 -~~~~vGdrV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~  164 (332)
                       +.+++||||.+.+. ..|+.|.+|+.|++++|++......+...+|             ....|+|+||+.++++++++
T Consensus        82 ~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G-------------~~~~Ggfaey~~v~~~~~~~  148 (192)
T d1piwa1          82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDG-------------YVSQGGYANYVRVHEHFVVP  148 (192)
T ss_dssp             CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTS-------------CBCCCSSBSEEEEEGGGEEE
T ss_pred             ccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccc-------------cccccceeeEEEeehHHeEE
Confidence             56999999987665 5799999999999999999875532222222             12235699999999999999


Q ss_pred             cCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEE
Q 043260          165 VDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVF  203 (332)
Q Consensus       165 lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~  203 (332)
                      +|+++++++|+.+.+.+.|||+++ +.+++++|++|||.
T Consensus       149 iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         149 IPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             CCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            999999988877665578999988 67899999999874

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-35  Score=249.35  Aligned_cols=170  Identities=25%  Similarity=0.333  Sum_probs=148.7

Q ss_pred             ceeeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC---CCCCCcccccceeEEEEEeCCCCCC
Q 043260           13 YYAAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP---LPLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        13 ~~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      .+++|++++++++ +++++++.|+|+++||||||++++||++|++ +.+...   ...+|.++|||++|+|+++|+++++
T Consensus         6 p~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~   84 (185)
T d1pl8a1           6 PNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKH   84 (185)
T ss_dssp             CCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCS
T ss_pred             CCCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceee
Confidence            3678999999987 9999999999999999999999999999998 664321   2567999999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCcccccccc-CCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      |++||||++.+..+|+.|++|+.|+++.|++..+.  |.. .+|                  +|+||+.+++++++++|+
T Consensus        85 ~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~--g~~~~~G------------------~~aey~~~~~~~~~~lP~  144 (185)
T d1pl8a1          85 LKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFC--ATPPDDG------------------NLCRFYKHNAAFCYKLPD  144 (185)
T ss_dssp             CCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEET--TBTTBCC------------------SCBSEEEEEGGGEEECCT
T ss_pred             ecccccceecceeccccchhhccchhchhccceee--ecccccc------------------cceEEEEEchHHEEECCC
Confidence            99999999999999999999999999999988766  432 333                  599999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCCh
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGA  207 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~  207 (332)
                      ++++++++++  +++++++++ +..++++|++||| |+|+
T Consensus       145 ~~~~~~aa~~--pl~~a~~a~-~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         145 NVKPLVTHRF--PLEKALEAF-ETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             TCGGGEEEEE--EGGGHHHHH-HHHHTTCCSEEEE-ECCT
T ss_pred             CCCHHHHHHH--HHHHHHHHH-HHhCCCCCCEEEE-EeCC
Confidence            9999998765  566788876 6678999999988 6654

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=100.00  E-value=4.1e-36  Score=252.73  Aligned_cols=168  Identities=20%  Similarity=0.188  Sum_probs=140.8

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||++++++++ ++++++|.|+|+++|||||++++|||++|++ +.+......+|+++|||++|+|+++|+++++|++||
T Consensus         1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGd   79 (177)
T d1jqba1           1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGD   79 (177)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecCCC
Confidence            89999999998 9999999999999999999999999999998 766666678899999999999999999999999999


Q ss_pred             EEEeecccCCCCCcccccCCcccCCCCcccc-ccccCCCCCcccccccceecccccCCceeeEEecC--CceEEcCCCCC
Q 043260           94 IVIPTFIGECRECENCTSEMANLCLKYPFTF-HGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDA--NYVVKVDPSID  170 (332)
Q Consensus        94 rV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~--~~v~~lP~~~~  170 (332)
                      ||++.+..+|++|.+|++|++++|.+..... .|...+|                  +|+||+++|.  ..++++|++++
T Consensus        80 rV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G------------------~~aEy~~vp~a~~~l~~iP~~~~  141 (177)
T d1jqba1          80 RVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDG------------------VFGEYFHVNDADMNLAILPKDVD  141 (177)
T ss_dssp             EEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCC------------------SSBSSEEESSHHHHCEECCTTSC
T ss_pred             cEEEeeeeccccccchhhhhhcccccccccccccCCCCh------------------hcCeeEEEEhhhCeEEECCCCcc
Confidence            9999999999999999999999999885432 3444444                  5999999985  47999999999


Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHH
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGV  212 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~  212 (332)
                      +++++....   +++..+        ++.+||+|+|++|+++
T Consensus       142 ~~~~~~~~~---~~~~~~--------~~~vlv~g~gp~gl~a  172 (177)
T d1jqba1         142 LSKLVTHVY---HGFDHI--------EEALLLMKDKPKDLIK  172 (177)
T ss_dssp             GGGGEEEEE---ESGGGH--------HHHHHHHHHCCTTCSE
T ss_pred             hHHHHHHHH---HHHHHh--------cCceEEECCCHHHhhe
Confidence            887765432   233322        2346777777777644

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1e-33  Score=238.58  Aligned_cols=166  Identities=28%  Similarity=0.409  Sum_probs=144.4

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCC--------CCCCCcccccceeEEEEEeCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFP--------LPLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~--------~~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      |||++++++++++++++++.|+|++|||||||.++|||++|++ +.|.++        ...+|+++|||++|+|+++|++
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            8999999999889999999999999999999999999999999 887543        2578999999999999999999


Q ss_pred             CCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCC-ceEE
Q 043260           86 VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDAN-YVVK  164 (332)
Q Consensus        86 v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~-~v~~  164 (332)
                      +++|++||||++.+..+|+.|.+|++|+++.|++....  |+..+|+                  |+||+.+++. .+++
T Consensus        81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~--g~~~~G~------------------~aey~~vp~~~~~~~  140 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL--GINFDGA------------------YAEYVIVPHYKYMYK  140 (177)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEB--TTTBCCS------------------SBSEEEESCGGGEEE
T ss_pred             ccccccCceEeeeeccccccccccccccccccCCccee--eeccccc------------------cccEEEEEhHHeEEE
Confidence            99999999999999999999999999999999998766  7766665                  9999999765 5667


Q ss_pred             cCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEE
Q 043260          165 VDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAV  202 (332)
Q Consensus       165 lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV  202 (332)
                      +|+..+.+.|+.+..++.++++++ ..+++ .|++|||
T Consensus       141 ~~~~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         141 LRRVKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             CSSSCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            766665555555556888999987 55565 6899987

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=6.7e-36  Score=256.42  Aligned_cols=189  Identities=22%  Similarity=0.219  Sum_probs=155.9

Q ss_pred             eeeEEEecCCCCeEEEEEecCCC-------CCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPP-------KATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEV   86 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~-------~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   86 (332)
                      +||++++++++ +++++++.|++       .++||+|||.+++||++|++ +.|.++ ..+|+++|||++|+|+++|++|
T Consensus         2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~-~~~P~v~GHE~~G~Vv~vG~~V   79 (201)
T d1kola1           2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDV   79 (201)
T ss_dssp             EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred             cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc-cccceeccceeeeeeecccccc
Confidence            69999999997 99999999975       46999999999999999999 888765 5789999999999999999999


Q ss_pred             CCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccc-cccCCCCCcccccccceecccccCCceeeEEecC--CceE
Q 043260           87 KELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFH-GLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDA--NYVV  163 (332)
Q Consensus        87 ~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~-g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~--~~v~  163 (332)
                      ++|++||||++.+..+|++|++|++|+++.|.+...... +.......           ....|+|+||+++|.  ..++
T Consensus        80 ~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~-----------~~~~Gg~aeyv~vp~~~~~l~  148 (201)
T d1kola1          80 ENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDM-----------GDWTGGQAEYVLVPYADFNLL  148 (201)
T ss_dssp             CSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTS-----------CCBCCCSBSEEEESSHHHHCE
T ss_pred             ccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccCC-----------CccccccccEEEeehHHCeEE
Confidence            999999999999999999999999999999988764432 22111100           112367999999975  3799


Q ss_pred             EcCCCCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCC
Q 043260          164 KVDPSIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA  221 (332)
Q Consensus       164 ~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~  221 (332)
                      +|||+.++.+++.+..++.++++++ +..+.+.++    +|+|++|+.++|+||.+|+
T Consensus       149 ~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g~----~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         149 KLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYGE----FDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             ECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHHH----HHHTCSCEEEECTTCSSCC
T ss_pred             ECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCeE----EeeCHHHHHHHHHHHHcCC
Confidence            9999877777777777888888876 445554443    5889999999999998874

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.4e-33  Score=234.90  Aligned_cols=167  Identities=29%  Similarity=0.455  Sum_probs=145.3

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCC-CCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~-~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||++++++++++++++++.|+|++|||||||+++|||++|++ +.+. .....+|.++|||++|+|+++|++++++++|
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG   80 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence            8999999999889999999999999999999999999999998 6654 3446789999999999999999999999999


Q ss_pred             CEEEeecc-cCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCCh
Q 043260           93 DIVIPTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDL  171 (332)
Q Consensus        93 drV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~  171 (332)
                      |||++.+. ..|+.|..|+.+.++.|.+....  |+..+|+                  |+||+.+++++++++|+++++
T Consensus        81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~G~------------------~aey~~v~~~~~~~iP~~~~~  140 (171)
T d1rjwa1          81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKNA--GYSVDGG------------------YAEYCRAAADYVVKIPDNTII  140 (171)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEEB--TTTBCCS------------------SBSEEEEEGGGCEECCTTCCE
T ss_pred             eEEeeccccccccccccccCCCcccccccccc--ceeccCc------------------cccceEecHHHEEECCCCCCH
Confidence            99987665 56899999999999999998776  7766665                  999999999999999999998


Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL  205 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~  205 (332)
                      +.|+ +. .+.++++.+. .+.+ +|++|||+|.
T Consensus       141 e~A~-l~-~~~~~~~~~~-~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         141 EVQP-LE-KINEVFDRML-KGQI-NGRVVLTLED  170 (171)
T ss_dssp             EEEE-GG-GHHHHHHHHH-TTCC-SSEEEEECCC
T ss_pred             HHHH-HH-HHHHHHHHHH-hcCC-CCCEEEEeCC
Confidence            7665 43 5667777663 4455 5999999984

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.2e-33  Score=234.68  Aligned_cols=165  Identities=24%  Similarity=0.449  Sum_probs=137.4

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGD   93 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   93 (332)
                      |||++.++++++|++++++.|+|++|||||||.++|||++|++ +.|..+...+|+++|||++|+|+++|++|+++++||
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGd   80 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGD   80 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCCCC
Confidence            8999999999999999999999999999999999999999999 888877788999999999999999999999999999


Q ss_pred             EEEeecc-cCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           94 IVIPTFI-GECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        94 rV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      ||.+.+. .+|+.|.+|++|++++|++......+......            ....|+|+||+.+++++++++|+.....
T Consensus        81 rV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~------------~~~~GgfaEy~~v~~~~~~~ip~~~~~~  148 (179)
T d1uufa1          81 LVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEP------------GHTLGGYSQQIVVHERYVLRIRVADIEM  148 (179)
T ss_dssp             EEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTT------------SBCCCSSBSEEEEEGGGCEECCCCCEEE
T ss_pred             EEEEcccccccCccccccCcccccCCCccccccccCCCCC------------cccccccceEEEechHHEEECCCCCcCh
Confidence            9987664 69999999999999999998755333332221            1224679999999999999999665433


Q ss_pred             hhhhcccchhhhHHHHHHhhCCC
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVE  195 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~  195 (332)
                      ..+   .++.++++++ ..+.++
T Consensus       149 ~~a---~~l~~a~~a~-~~a~v~  167 (179)
T d1uufa1         149 IRA---DQINEAYERM-LRGDVK  167 (179)
T ss_dssp             ECG---GGHHHHHHHH-HTTCSS
T ss_pred             hHh---chhHHHHHHH-HHhCcc
Confidence            222   3667888877 344443

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.4e-29  Score=204.18  Aligned_cols=144  Identities=20%  Similarity=0.295  Sum_probs=127.9

Q ss_pred             eeeeEEEecCCCC--eEEE-EEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCC
Q 043260           14 YAAAVVCWGEGEP--WKVE-EIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        14 ~~~a~~~~~~~~~--l~~~-~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      .|||+++++++++  ++++ +++.|+|++|||||||++++||++|++ +.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (150)
T d1yb5a1           2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA   81 (150)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred             ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence            5899999987765  7774 689999999999999999999999999 8776654 578999999999999999999999


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      |++||||+..+.                            .                  .|+|+||+.+++++++++|++
T Consensus        82 ~~vGdrV~~~~~----------------------------~------------------~G~~ae~~~v~~~~~~~iP~~  115 (150)
T d1yb5a1          82 FKKGDRVFTSST----------------------------I------------------SGGYAEYALAADHTVYKLPEK  115 (150)
T ss_dssp             CCTTCEEEESCC----------------------------S------------------SCSSBSEEEEEGGGEEECCTT
T ss_pred             cccCcccccccc----------------------------c------------------cccccccccccccccccccCC
Confidence            999999984321                            1                  246999999999999999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEE
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVF  203 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~  203 (332)
                      +++++||+++++..|+|+++...+....|+++||+
T Consensus       116 ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         116 LKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             CCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             CCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            99999999999999999998888899999999874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.95  E-value=1.9e-27  Score=199.21  Aligned_cols=157  Identities=30%  Similarity=0.539  Sum_probs=145.2

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      +|++.|+.++|++.|||+++.+.+++++|++|+|+|+|++|++++|+++.+|++.|++++.+++|+++++++|+++++++
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~   80 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS   80 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence            46788999999999999999899999999999999999999999999999999888899999999999999999999999


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhc-CcEEEEeecc
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      ++   +++.+++++++++ |+|+||||+|++..++++++.++++ |+++.+|.+.. ...++++..++. +++|+|++++
T Consensus        81 ~~---~~~~~~i~~~t~g-g~D~vid~~G~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g  155 (174)
T d1f8fa2          81 KT---QDPVAAIKEITDG-GVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEG  155 (174)
T ss_dssp             TT---SCHHHHHHHHTTS-CEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGG
T ss_pred             CC---cCHHHHHHHHcCC-CCcEEEEcCCcHHHHHHHHhcccCc-eEEEEEeecCCCcccccCHHHHHHCCCEEEEEEec
Confidence            88   8899999999988 9999999999988999999999998 99999998765 678899988877 9999999988


Q ss_pred             cccc
Q 043260          327 GIKT  330 (332)
Q Consensus       327 ~~~~  330 (332)
                      +..+
T Consensus       156 ~~~~  159 (174)
T d1f8fa2         156 SGSP  159 (174)
T ss_dssp             GSCH
T ss_pred             CCCh
Confidence            7653

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.4e-27  Score=193.14  Aligned_cols=140  Identities=21%  Similarity=0.291  Sum_probs=120.2

Q ss_pred             eeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           16 AAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        16 ~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      +.++|++++.+  |++++.+.|+|++|||||||++++||++|+. +.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vG   81 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAG   81 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeeccccccc
Confidence            45778888876  8999999999999999999999999999999 89988888899999999999999999999999999


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      |||+..                            ..                  ..|+|+||+.++.+.++++|++++++
T Consensus        82 drV~~~----------------------------~~------------------~~G~~ae~~~v~~~~~~~~P~~~~~~  115 (147)
T d1qora1          82 DRVVYA----------------------------QS------------------ALGAYSSVHNIIADKAAILPAAIKVD  115 (147)
T ss_dssp             CEEEES----------------------------CC------------------SSCCSBSEEEEEGGGEEECCTTSCCC
T ss_pred             ceeeee----------------------------cc------------------ccccceeEEEEehHHeEEcCcccchH
Confidence            999721                            11                  12569999999999999999999887


Q ss_pred             hhh--hcccchhhhHHHHHHhhCCCCCCEEEE
Q 043260          173 LAG--FLSCGYSSGFGAAWKEFKVEKGSSVAV  202 (332)
Q Consensus       173 ~aa--~l~~~~~ta~~al~~~~~~~~g~~vlV  202 (332)
                      +++  +++....++++++.+ .++++|++|||
T Consensus       116 ~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI  146 (147)
T d1qora1         116 VAEQQKYPLKDAQRAHEILE-SRATQGSSLLI  146 (147)
T ss_dssp             CCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence            554  455666777777744 68999999998

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.95  E-value=1.8e-27  Score=199.35  Aligned_cols=156  Identities=29%  Similarity=0.450  Sum_probs=139.5

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      +|+++|+.+++++.|+|+++ +.+++++|++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++|+++++++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY   79 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence            57899999999999999997 67899999999999999999999999999998789999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCC---hHhHhcCcEEEEee
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLN---FPAIALGRNLKGTI  324 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~---~~~~~~~~~i~g~~  324 (332)
                      ++   +++.+.+.+++++.|+|+||||+|++..+++++++++++ |+++.+|.+.. ...+++   +..++.++++.|+.
T Consensus        80 ~~---~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~  155 (174)
T d1jqba2          80 KN---GHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGL  155 (174)
T ss_dssp             GG---SCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBC
T ss_pred             cc---hhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcC-CEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEec
Confidence            88   888999999999999999999999988999999999998 99999998775 444433   33334589999998


Q ss_pred             ccccc
Q 043260          325 FGGIK  329 (332)
Q Consensus       325 ~~~~~  329 (332)
                      .+.++
T Consensus       156 ~~~~r  160 (174)
T d1jqba2         156 CPGGR  160 (174)
T ss_dssp             CCCHH
T ss_pred             CCCCc
Confidence            87654

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=1.5e-27  Score=195.51  Aligned_cols=148  Identities=20%  Similarity=0.204  Sum_probs=124.3

Q ss_pred             cceeeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCC
Q 043260           12 IYYAAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVK   87 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~   87 (332)
                      |.+|||+++++++++  +++++++.|+|++|||||||+++|||++|+. +.+.++. ...|.++|||++|+|++  ..++
T Consensus         1 m~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~   78 (152)
T d1xa0a1           1 MSAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHP   78 (152)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSS
T ss_pred             CCceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCC
Confidence            568999999988875  5588999999999999999999999999988 7776553 57899999999999999  5567


Q ss_pred             CCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCC
Q 043260           88 ELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDP  167 (332)
Q Consensus        88 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~  167 (332)
                      .+++||+|+...+.                       .+...                  .|+|+||+.++++.++++|+
T Consensus        79 ~~~~g~~v~~~~~~-----------------------~~~~~------------------~G~~aEy~~v~~~~~~~iP~  117 (152)
T d1xa0a1          79 RFREGDEVIATGYE-----------------------IGVTH------------------FGGYSEYARLHGEWLVPLPK  117 (152)
T ss_dssp             SCCTTCEEEEESTT-----------------------BTTTB------------------CCSSBSEEEECGGGCEECCT
T ss_pred             ccccCCEEEEecCc-----------------------ccccc------------------CCCcceeeeehhhccccCCC
Confidence            89999999844221                       02222                  35699999999999999999


Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEEC
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFG  204 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G  204 (332)
                      ++++ +||+++++..||+.++....+++ |++|||+|
T Consensus       118 ~l~~-~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         118 GLER-IAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             THHH-HEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CCCH-HHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            9984 68888889899988887878875 99999975

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.94  E-value=9e-27  Score=195.06  Aligned_cols=158  Identities=35%  Similarity=0.606  Sum_probs=136.4

Q ss_pred             hhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      |.+||++.|++.|+|+++.+.+++++|++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++|+++++|+.+
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~   81 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKD   81 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence            56799999999999999888899999999999999999999999999999989999999999999999999999998865


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeeccccc
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIFGGIK  329 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~  329 (332)
                        .+...+.+.+.+.+.|+|++||++|+...+.+++..+.+++|+++++|.... ..+++++..++++++|+|++++++.
T Consensus        82 --~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~  159 (174)
T d1p0fa2          82 --YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFK  159 (174)
T ss_dssp             --CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred             --chhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHhCCCEEEEEEeCCCC
Confidence              1223334444444559999999999988899999988774489999998765 7788887777779999999998865


Q ss_pred             c
Q 043260          330 T  330 (332)
Q Consensus       330 ~  330 (332)
                      +
T Consensus       160 ~  160 (174)
T d1p0fa2         160 G  160 (174)
T ss_dssp             G
T ss_pred             H
Confidence            4

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.94  E-value=5.5e-27  Score=196.28  Aligned_cols=158  Identities=39%  Similarity=0.655  Sum_probs=138.5

Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      ++++||.++|++.|+|+++.+.+++++|++|+|+|+|++|++++|+++.+|+++|++++.+++|+++++++|+++++++.
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            57899999999999999998889999999999999999999999999999998999999999999999999999999875


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhcCcEEEEeeccccc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGIK  329 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  329 (332)
                      .  .++..+.+.+.+.+.|+|+||||+|++.++++++++++++.|+++++|.+. ...++++..++++++|.|++.+++.
T Consensus        82 ~--~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~-~~~~i~~~~~~~~k~i~Gs~~Gs~~  158 (174)
T d1e3ia2          82 E--LDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV-DEMTIPTVDVILGRSINGTFFGGWK  158 (174)
T ss_dssp             G--CSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSS-SEEEEEHHHHHTTCEEEECSGGGCC
T ss_pred             c--chhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCC-CccccchHHHhccCEEEEEEeeCCC
Confidence            4  133444455545556999999999999999999999999339999999877 6678888888888999999998875


Q ss_pred             c
Q 043260          330 T  330 (332)
Q Consensus       330 ~  330 (332)
                      +
T Consensus       159 ~  159 (174)
T d1e3ia2         159 S  159 (174)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.2e-27  Score=196.07  Aligned_cols=152  Identities=22%  Similarity=0.293  Sum_probs=140.6

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN  247 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~  247 (332)
                      +|+++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +||+++++++|+++++++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence            6899999999999999999988889999999999997 9999999999999999 8999999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      +++   .++.+.+++.+++.++|+|||++|+ ..++.++++++++ |+++.+|..+  ..++++..++. +++|.|+.+.
T Consensus        80 ~~~---~~~~~~i~~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~k~~~i~g~~~~  152 (174)
T d1yb5a2          80 HRE---VNYIDKIKKYVGEKGIDIIIEMLAN-VNLSKDLSLLSHG-GRVIVVGSRG--TIEINPRDTMAKESSIIGVTLF  152 (174)
T ss_dssp             TTS---TTHHHHHHHHHCTTCEEEEEESCHH-HHHHHHHHHEEEE-EEEEECCCCS--CEEECTHHHHTTTCEEEECCGG
T ss_pred             ccc---ccHHHHhhhhhccCCceEEeecccH-HHHHHHHhccCCC-CEEEEEecCC--CCCCCHHHHHHCCCEEEEEEec
Confidence            988   8999999999999999999999997 5899999999998 9999999754  47788888777 9999999876


Q ss_pred             cc
Q 043260          327 GI  328 (332)
Q Consensus       327 ~~  328 (332)
                      +.
T Consensus       153 ~~  154 (174)
T d1yb5a2         153 SS  154 (174)
T ss_dssp             GC
T ss_pred             CC
Confidence            54

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=1.7e-27  Score=189.88  Aligned_cols=129  Identities=20%  Similarity=0.213  Sum_probs=115.2

Q ss_pred             eeeEEEecCCCCeEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCCCC
Q 043260           15 AAAVVCWGEGEPWKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELKEG   92 (332)
Q Consensus        15 ~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   92 (332)
                      |||++++++++++++++++.|+|+++|||||++++|||++|+. ..|.++. ..+|+++|||++|+|           +|
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG   69 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG   69 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence            8999999999889999999999999999999999999999999 8887654 579999999999999           39


Q ss_pred             CEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCChh
Q 043260           93 DIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLS  172 (332)
Q Consensus        93 drV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~~~  172 (332)
                      |||+                             ++..+|                  +|+||+.+++++++++|++++++
T Consensus        70 d~V~-----------------------------~~~~~G------------------~~aey~~v~~~~~~~~P~~~~~~  102 (131)
T d1iz0a1          70 RRYA-----------------------------ALVPQG------------------GLAERVAVPKGALLPLPEGRPVV  102 (131)
T ss_dssp             EEEE-----------------------------EECSSC------------------CSBSEEEEEGGGCEECCTTCCCE
T ss_pred             ceEE-----------------------------EEeccC------------------ccceeeeeCHHHeEEccCCCCHH
Confidence            9998                             443334                  59999999999999999999999


Q ss_pred             hhhhcccchhhhHHHHHHhhCCCCCCEEEEE
Q 043260          173 LAGFLSCGYSSGFGAAWKEFKVEKGSSVAVF  203 (332)
Q Consensus       173 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~  203 (332)
                      +||++++++.|||+++.+++  +.|++||++
T Consensus       103 ~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1         103 GPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             EEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            99999999999999996654  569988863

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.94  E-value=1e-26  Score=195.05  Aligned_cols=160  Identities=34%  Similarity=0.566  Sum_probs=140.9

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      .|+++||.++|++.|+|+++.+.+++++|++|+|+|+|++|++++|+++.+|+.+||+++.+++|+++++++|+++++|+
T Consensus         2 ~P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~   81 (176)
T d1d1ta2           2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISP   81 (176)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECG
T ss_pred             cCHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECc
Confidence            46899999999999999999888999999999999999999999999999998899999999999999999999999998


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeeccc
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIFGG  327 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~  327 (332)
                      .+  .+...+.+.+.+.+.|+|++||++|....+..++..+.+++|+++.+|.+.. ....+++..++++++|+|+++|+
T Consensus        82 ~~--~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~  159 (176)
T d1d1ta2          82 KD--STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGG  159 (176)
T ss_dssp             GG--CSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGG
T ss_pred             cc--cchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHhCCCEEEEEEEeC
Confidence            76  2233455666676779999999999988888888877664499999998876 77788888888899999999988


Q ss_pred             ccc
Q 043260          328 IKT  330 (332)
Q Consensus       328 ~~~  330 (332)
                      .++
T Consensus       160 ~~~  162 (176)
T d1d1ta2         160 LKS  162 (176)
T ss_dssp             CCH
T ss_pred             CCc
Confidence            764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=2.1e-26  Score=194.16  Aligned_cols=159  Identities=25%  Similarity=0.340  Sum_probs=139.3

Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +++.+|.+.|+..|||+++.+..++++|++|||+|+|++|++++|+++.+|+++|++++++++|+++++++|+++++++.
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~   81 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRR   81 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEecc
Confidence            34678888999999999998888999999999999999999999999999987899999999999999999999999998


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHh-Hhc-CcEEEEeecc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPA-IAL-GRNLKGTIFG  326 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~-~~~-~~~i~g~~~~  326 (332)
                      +....+..+.+.+++++.|+|+|||++|++.++++++++++++ |+++.+|.... ..+++++.. +++ +++|.|++.+
T Consensus        82 ~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~  160 (182)
T d1vj0a2          82 ETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVS  160 (182)
T ss_dssp             TSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCC
T ss_pred             ccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCC-CEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeC
Confidence            7333445566888898989999999999988899999999998 99999997665 667777654 444 9999999987


Q ss_pred             ccc
Q 043260          327 GIK  329 (332)
Q Consensus       327 ~~~  329 (332)
                      +..
T Consensus       161 ~~~  163 (182)
T d1vj0a2         161 DTS  163 (182)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.93  E-value=6.8e-26  Score=188.87  Aligned_cols=155  Identities=21%  Similarity=0.297  Sum_probs=143.4

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN  247 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~  247 (332)
                      +++.+||+++|++.|||+++ +..++++|++|+|+|+ |++|++++|+++.+|..+|++++++++|+++++++|++++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence            57899999999999999998 6789999999999996 999999999999999879999999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      +++   +++.+.+++.+.+.++|+||||+|++..++.++++++++ |+++.+|... ...+++...+++ +++|.|++.+
T Consensus        80 ~~~---~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~k~i~i~Gs~~~  154 (170)
T d1jvba2          80 ASM---QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFG-ADLHYHAPLITLSEIQFVGSLVG  154 (170)
T ss_dssp             TTT---SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSC-CCCCCCHHHHHHHTCEEEECCSC
T ss_pred             cCC---cCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccC-CEEEEecccc-CccccCHHHHHhCCcEEEEEecC
Confidence            887   888999999998889999999999988899999999998 9999999877 568899888877 9999999987


Q ss_pred             ccc
Q 043260          327 GIK  329 (332)
Q Consensus       327 ~~~  329 (332)
                      ++.
T Consensus       155 ~~~  157 (170)
T d1jvba2         155 NQS  157 (170)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.93  E-value=3.7e-25  Score=185.22  Aligned_cols=158  Identities=42%  Similarity=0.691  Sum_probs=132.9

Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      |+++||+++|++.|+|+++.+.+++++|++|||+|+|++|++++|+++.+|+++|++++++++|+++++++|+++++++.
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~   81 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence            57899999999999999998889999999999999999999999999999988999999999999999999999999886


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC--CcccCChHhHhcCcEEEEeeccc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE--AKVPLNFPAIALGRNLKGTIFGG  327 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~--~~~~~~~~~~~~~~~i~g~~~~~  327 (332)
                      + ..+...+.+++.+++ |+|+|||++|+...+..+..+++++ ++++.++....  .....+...++++++|.|+++++
T Consensus        82 ~-~~~~~~~~~~~~~~~-g~D~vid~~G~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~  158 (176)
T d2fzwa2          82 D-FSKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKG-WGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGG  158 (176)
T ss_dssp             G-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGG
T ss_pred             c-hhhHHHHHHHHHcCC-CCcEeeecCCCHHHHHHHHHhhcCC-ceeEEEEeeccccccccccHHHHHCCCEEEEEeeeC
Confidence            5 223444555555554 9999999999988889999999987 78777654443  44444555566799999999988


Q ss_pred             ccc
Q 043260          328 IKT  330 (332)
Q Consensus       328 ~~~  330 (332)
                      +.+
T Consensus       159 ~~~  161 (176)
T d2fzwa2         159 WKS  161 (176)
T ss_dssp             CCH
T ss_pred             CcH
Confidence            654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.8e-25  Score=182.27  Aligned_cols=153  Identities=23%  Similarity=0.353  Sum_probs=131.6

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      +|+++||++. ++++||+++ +++++++|++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++|++++++.
T Consensus         1 vS~e~Aal~e-pla~a~~a~-~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~   78 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI   78 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence            5789999774 889999987 67899999999999999999999999999999889999999999999999999999988


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      .+.......+.+.... +.++|+|||++|++..++.++++++++ |+++++|.+. ...++++..++. +++|+|++.+
T Consensus        79 ~~~~~~~~~~~~~~~~-g~g~Dvvid~~G~~~~~~~a~~~~~~g-G~iv~~G~~~-~~~~~~~~~~~~k~l~i~Gs~~~  154 (171)
T d1pl8a2          79 SKESPQEIARKVEGQL-GCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGS-EMTTVPLLHAAIREVDIKGVFRY  154 (171)
T ss_dssp             SSCCHHHHHHHHHHHH-TSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCC-SCCCCCHHHHHHTTCEEEECCSC
T ss_pred             cccccccccccccccC-CCCceEEEeccCCchhHHHHHHHhcCC-CEEEEEecCC-CCCccCHHHHHHCCcEEEEEeCC
Confidence            8722222233333333 458999999999988999999999998 9999999887 567889888877 9999999754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.8e-25  Score=184.33  Aligned_cols=152  Identities=18%  Similarity=0.310  Sum_probs=137.2

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      +++++||+++|++.|||+++ +.+++++|++|+|+|+|++|++++|+++.+|+ +|++++++++|+++++++|+++++++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence            57999999999999999998 56899999999999999999999999999997 99999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeeccc
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      .+   ++..+.+.+.+.  ++|.+++++++++.+++++++++++ |+++.+|.+. ...+++...++. +++|.|++.++
T Consensus        79 ~~---~~~~~~~~~~~~--g~~~~i~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~k~~~i~Gs~~~~  151 (166)
T d1llua2          79 RQ---EDPVEAIQRDIG--GAHGVLVTAVSNSAFGQAIGMARRG-GTIALVGLPP-GDFPTPIFDVVLKGLHIAGSIVGT  151 (166)
T ss_dssp             TT---SCHHHHHHHHHS--SEEEEEECCSCHHHHHHHHTTEEEE-EEEEECCCCS-SEEEEEHHHHHHTTCEEEECCSCC
T ss_pred             cc---hhHHHHHHHhhc--CCcccccccccchHHHHHHHHhcCC-cEEEEEEecC-CCccCCHHHHHhCCcEEEEEeecC
Confidence            88   788888887764  4777888888888999999999998 9999999877 567888888777 99999998876


Q ss_pred             cc
Q 043260          328 IK  329 (332)
Q Consensus       328 ~~  329 (332)
                      +.
T Consensus       152 ~~  153 (166)
T d1llua2         152 RA  153 (166)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=6.4e-26  Score=189.31  Aligned_cols=149  Identities=19%  Similarity=0.267  Sum_probs=125.2

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN  247 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~  247 (332)
                      +++++||++++++.|||+++ +..++++|++|||+|+ |++|++++|+++.+|+ +||+++++++|++.++++|+++++|
T Consensus         1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence            58999999999999999998 5589999999999997 9999999999999999 9999999999999999999999998


Q ss_pred             CCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      +.+     .   ..+.+.+.|+|+|||++|.  .+++++++++++ |+++.+|...+...++++..++. +++|.|+++.
T Consensus        79 ~~~-----~---~~~~~~~~g~D~v~d~~G~--~~~~~~~~l~~~-G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~  147 (171)
T d1iz0a2          79 YAE-----V---PERAKAWGGLDLVLEVRGK--EVEESLGLLAHG-GRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLT  147 (171)
T ss_dssp             GGG-----H---HHHHHHTTSEEEEEECSCT--THHHHHTTEEEE-EEEEEC-------CCCCTTHHHHTTCEEEECCHH
T ss_pred             hhh-----h---hhhhhccccccccccccch--hHHHHHHHHhcC-CcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCc
Confidence            753     2   3344556799999999884  679999999998 99999998776667788888777 9999999887


Q ss_pred             cccc
Q 043260          327 GIKT  330 (332)
Q Consensus       327 ~~~~  330 (332)
                      .+.+
T Consensus       148 ~~~~  151 (171)
T d1iz0a2         148 PLLR  151 (171)
T ss_dssp             HHTT
T ss_pred             Chhh
Confidence            6543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.92  E-value=1.2e-24  Score=182.37  Aligned_cols=159  Identities=36%  Similarity=0.603  Sum_probs=132.9

Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      |+++||+++|++.|+|+++.+.+++++|++|||+|+|++|++++++++.+|+++|++++++++|+++++++|+++++++.
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~   81 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence            67899999999999999998999999999999999999999999999999988999999999999999999999999875


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeecccc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIFGGI  328 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~~  328 (332)
                      +  .++..+...+.+.+.|+|++||++|.+..+.+++..+++++|+++..+.... .....+...++++++|.|+++++.
T Consensus        82 ~--~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~  159 (176)
T d2jhfa2          82 D--YKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGF  159 (176)
T ss_dssp             G--CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGC
T ss_pred             C--chhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCC
Confidence            4  2333444444455559999999999988889999999997345555555554 445555566667999999998876


Q ss_pred             cc
Q 043260          329 KT  330 (332)
Q Consensus       329 ~~  330 (332)
                      .+
T Consensus       160 ~~  161 (176)
T d2jhfa2         160 KS  161 (176)
T ss_dssp             CH
T ss_pred             CH
Confidence            54

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3e-25  Score=186.38  Aligned_cols=148  Identities=19%  Similarity=0.233  Sum_probs=133.2

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN  247 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~  247 (332)
                      +|+++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+..|+ +|++++++++|+++++++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence            5899999999999999999988889999999999987 8899999999999999 9999999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc--CcEEEE
Q 043260          248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL--GRNLKG  322 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~--~~~i~g  322 (332)
                      +++   +++.+.++++|++.++|+|+|+++. +.+..++++++++ |+++.+|.......+++...+..  ++.+.+
T Consensus        80 ~~~---~d~~~~v~~~t~g~g~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  151 (179)
T d1qora2          80 YRE---EDLVERLKEITGGKKVRVVYDSVGR-DTWERSLDCLQRR-GLMVSFGNSSGAVTGVNLGILNQKGSLYVTR  151 (179)
T ss_dssp             TTT---SCHHHHHHHHTTTCCEEEEEECSCG-GGHHHHHHTEEEE-EEEEECCCTTCCCCCBCTHHHHHTTSCEEEC
T ss_pred             CCC---CCHHHHHHHHhCCCCeEEEEeCccH-HHHHHHHHHHhcC-CeeeecccccCCccccchhhhhccceEEEEe
Confidence            998   8999999999999999999999997 5899999999998 99999998877666666655544  444443

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.92  E-value=9.3e-25  Score=182.32  Aligned_cols=152  Identities=17%  Similarity=0.265  Sum_probs=135.4

Q ss_pred             hhhhhhcccchhhhHHHHHHhh-CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          171 LSLAGFLSCGYSSGFGAAWKEF-KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~al~~~~-~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      +.++|+++|++.|||+++.+.. .+++|++|||+|+|++|++++|+++.+|+.+|++++++++|+++++++|+++++++.
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~   85 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR   85 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence            5788999999999999997655 479999999999999999999999999988999999999999999999999999987


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecccc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGGI  328 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~~  328 (332)
                      +   + ..+.+.+.+++.++|+|||++|+..++++++++++++ |+++.+|...  ..++++..++. +++|+|++.+++
T Consensus        86 ~---~-~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~--~~~~~~~~l~~k~~~i~Gs~~~~~  158 (172)
T d1h2ba2          86 R---D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYGG--ELRFPTIRVISSEVSFEGSLVGNY  158 (172)
T ss_dssp             S---C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEE-EEEEECCCSS--CCCCCHHHHHHTTCEEEECCSCCH
T ss_pred             c---c-HHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCC-CEEEEEeCcc--cccCCHHHHHhCCcEEEEEEecCH
Confidence            5   4 4455667788889999999999988899999999998 9999999754  47888888777 999999998876


Q ss_pred             c
Q 043260          329 K  329 (332)
Q Consensus       329 ~  329 (332)
                      .
T Consensus       159 ~  159 (172)
T d1h2ba2         159 V  159 (172)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.92  E-value=1.6e-24  Score=181.29  Aligned_cols=159  Identities=40%  Similarity=0.645  Sum_probs=133.3

Q ss_pred             ChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          170 DLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       170 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      |+++||+++|++.|+|+++.+.+++++|++|+|+|+|++|++++++++..|..+|++++++++|++.++++|||+++|+.
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~   81 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN   81 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence            67899999999999999998889999999999999999999999999999988999999999999999999999999987


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhcCcEEEEeeccccc
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIALGRNLKGTIFGGIK  329 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  329 (332)
                      +  .++..+.+.+.+.+.|+|++||++|+..++..+++++++++++++.+|.............++++++|+|++.+++.
T Consensus        82 ~--~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~  159 (175)
T d1cdoa2          82 D--HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFK  159 (175)
T ss_dssp             G--CSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCEEEECSGGGCC
T ss_pred             C--cchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCcccCccHHHHHCCcEEEEEEEeCCc
Confidence            6  23344566666666699999999999888899999988873455556665544444445555569999999988865


Q ss_pred             c
Q 043260          330 T  330 (332)
Q Consensus       330 ~  330 (332)
                      +
T Consensus       160 ~  160 (175)
T d1cdoa2         160 G  160 (175)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.92  E-value=3.6e-24  Score=178.20  Aligned_cols=153  Identities=22%  Similarity=0.337  Sum_probs=129.9

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      +|+++||++. ++++||+++ +..++++|++|+|+|+|++|++++|+++.+|+ +|++++++++|+++++++|++.+++.
T Consensus         1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence            5789999874 889999998 67899999999999999999999999999998 99999999999999999999987654


Q ss_pred             CCC--CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          249 DDE--PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       249 ~~~--~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      +..  ...+..+.+.+.. +.++|+|||++|++.++++++++++++ |+++.+|.+. ...++++..++. +++|.|++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~-g~g~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~-~~~~~~~~~~~~k~i~i~gs~~  154 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAI-GDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGS-QMVTVPLVNACAREIDIKSVFR  154 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHS-SSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCS-SCCCCCHHHHHTTTCEEEECCS
T ss_pred             cccccccchhhhhhhccc-ccCCceeeecCCChHHHHHHHHHHhcC-CceEEEecCC-CCCCcCHHHHHHCCCEEEEEEC
Confidence            431  2223344455544 458999999999988899999999998 9999999887 567889888887 999999975


Q ss_pred             cc
Q 043260          326 GG  327 (332)
Q Consensus       326 ~~  327 (332)
                      +.
T Consensus       155 ~~  156 (170)
T d1e3ja2         155 YC  156 (170)
T ss_dssp             CS
T ss_pred             CH
Confidence            54

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=8.6e-25  Score=177.41  Aligned_cols=130  Identities=15%  Similarity=0.115  Sum_probs=108.7

Q ss_pred             eeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 043260           15 AAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKELK   90 (332)
Q Consensus        15 ~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   90 (332)
                      |||+++++++.+  +++++++.|+|++|||||||.|+|||++|.. ..|.++. ..+|.++|+|++|+|+++|.+  .++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~~--~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSEDP--RFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECST--TCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeeccC--Ccc
Confidence            899999988765  7889999999999999999999999999998 8887654 578999999999999998764  699


Q ss_pred             CCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCCCC
Q 043260           91 EGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSID  170 (332)
Q Consensus        91 vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~~~  170 (332)
                      +||+|++....                       .|...+                  |+|+||+.+|+++++++|+++|
T Consensus        79 ~g~~v~~~~~~-----------------------~g~~~~------------------G~~Aey~~v~~~~vv~lP~~ls  117 (146)
T d1o89a1          79 AGQEVLLTGWG-----------------------VGENHW------------------GGLAEQARVKGDWLVAMPQGQA  117 (146)
T ss_dssp             TTCEEEEECTT-----------------------BTTTBC------------------CSSBSEEEECGGGCEECCTTSC
T ss_pred             ceeeEEeeccc-----------------------ceecCC------------------CcceeeeeeeeeeEEECCCCCC
Confidence            99999854321                       033333                  4699999999999999999999


Q ss_pred             hhhhhhcccchhhhHHH
Q 043260          171 LSLAGFLSCGYSSGFGA  187 (332)
Q Consensus       171 ~~~aa~l~~~~~ta~~a  187 (332)
                      +++||+++++..||+..
T Consensus       118 ~~eAA~l~~a~~tA~~~  134 (146)
T d1o89a1         118 AKEISLSEAPNFAEAII  134 (146)
T ss_dssp             CEEECGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999888887653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=1e-24  Score=183.65  Aligned_cols=149  Identities=17%  Similarity=0.302  Sum_probs=133.3

Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD  250 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  250 (332)
                      +|||++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +++++++++++++.++++|+++++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence            5899999999999999988889999999999987 9999999999999999 9999999999999999999999999988


Q ss_pred             CCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC-CcccCChHhHhcCcEEEEeecc
Q 043260          251 EPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE-AKVPLNFPAIALGRNLKGTIFG  326 (332)
Q Consensus       251 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~  326 (332)
                         +++.+.+++.++++|+|+|||++|+ +.++.++++++++ |+++.+|.... ....++...+.+++++.++...
T Consensus        80 ---~~~~~~v~~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (183)
T d1pqwa_          80 ---VDFADEILELTDGYGVDVVLNSLAG-EAIQRGVQILAPG-GRFIELGKKDVYADASLGLAALAKSASFSVVDLD  151 (183)
T ss_dssp             ---STHHHHHHHHTTTCCEEEEEECCCT-HHHHHHHHTEEEE-EEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHH
T ss_pred             ---cCHHHHHHHHhCCCCEEEEEecccc-hHHHHHHHHhcCC-CEEEEEccCCCCCCcccchHHHhCCcEEEEEEcc
Confidence               8999999999999999999999998 5899999999998 99999997765 3444444555558898887644

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=4.2e-26  Score=188.72  Aligned_cols=151  Identities=22%  Similarity=0.215  Sum_probs=124.7

Q ss_pred             ceeeeEEEecCCCC--eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC-CCCCcccccceeEEEEEeCCCCCC
Q 043260           13 YYAAAVVCWGEGEP--WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL-PLFPRVLGHEGVGMVESIGDEVKE   88 (332)
Q Consensus        13 ~~~~a~~~~~~~~~--l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~   88 (332)
                      .+|||++++..++.  +++++++.|++++|||||||+|+|||++|+. +.+.++. ...|.++|+|++|+|++  +.+++
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~   79 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR   79 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence            47999999976654  9999999999999999999999999999998 8887664 56788999999999998  56678


Q ss_pred             CCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEcCCC
Q 043260           89 LKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPS  168 (332)
Q Consensus        89 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~lP~~  168 (332)
                      +++||+|+..+...                       |...+                  |+|+||+.+|++.++++|++
T Consensus        80 ~~~g~~v~~~~~~~-----------------------g~~~~------------------G~~aey~~v~~~~l~~iP~~  118 (162)
T d1tt7a1          80 FAEGDEVIATSYEL-----------------------GVSRD------------------GGLSEYASVPGDWLVPLPQN  118 (162)
T ss_dssp             CCTTCEEEEESTTB-----------------------TTTBC------------------CSSBSSEEECGGGEEECCTT
T ss_pred             cccceeeEeeeccc-----------------------eeccc------------------cccceEEEecHHHEEECCCC
Confidence            99999998553311                       33333                  46999999999999999999


Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECC-Ch
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GA  207 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~  207 (332)
                      +|+++||.+++...|||.++. ..+...+++|||.|+ |+
T Consensus       119 ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~ga~G~  157 (162)
T d1tt7a1         119 LSLKEAMVDQLLTIVDREVSL-EETPGALKDILQNRIQGR  157 (162)
T ss_dssp             CCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTTCCSSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECCcce
Confidence            999999999999999998753 334455577777776 54

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.91  E-value=1.1e-24  Score=182.01  Aligned_cols=149  Identities=17%  Similarity=0.162  Sum_probs=126.9

Q ss_pred             CChhhhhhcccchhhhHHHH---HHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe
Q 043260          169 IDLSLAGFLSCGYSSGFGAA---WKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD  244 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al---~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~  244 (332)
                      +|++|||++++++.|||+++   .+..+.++|++|||+|+ |++|.+++|+++.+|+ +|+++.++++|.++++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            68999999999999999664   35678889999999997 9999999999999999 9999999999999999999999


Q ss_pred             eeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEe
Q 043260          245 FINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGT  323 (332)
Q Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~  323 (332)
                      ++++++    .+.+ ..+.+++.++|+|||++|+ +.+...+++|+++ |+++.+|...+...+++...++. +++|+|+
T Consensus        80 vi~~~~----~~~~-~~~~~~~~gvD~vid~vgg-~~~~~~l~~l~~~-Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv  152 (176)
T d1xa0a2          80 VLARED----VMAE-RIRPLDKQRWAAAVDPVGG-RTLATVLSRMRYG-GAVAVSGLTGGAEVPTTVHPFILRGVSLLGI  152 (176)
T ss_dssp             EEECC--------------CCSCCEEEEEECSTT-TTHHHHHHTEEEE-EEEEECSCCSSSCCCCCSHHHHHTTCEEEEC
T ss_pred             eeecch----hHHH-HHHHhhccCcCEEEEcCCc-hhHHHHHHHhCCC-ceEEEeecccCcccCCCHHHHHHCCcEEEEE
Confidence            999864    2333 3345566699999999998 4899999999998 99999999877778888888877 9999996


Q ss_pred             ec
Q 043260          324 IF  325 (332)
Q Consensus       324 ~~  325 (332)
                      ..
T Consensus       153 ~~  154 (176)
T d1xa0a2         153 DS  154 (176)
T ss_dssp             CS
T ss_pred             eC
Confidence            43

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.91  E-value=6.9e-27  Score=195.75  Aligned_cols=155  Identities=20%  Similarity=0.170  Sum_probs=126.5

Q ss_pred             cceeeeEEEecCCCC-----eEEEEEecCCCCCCeEEEEEeeeecCccccc-ccCCCCC----------CCCCcccccce
Q 043260           12 IYYAAAVVCWGEGEP-----WKVEEIQVEPPKATEVRFKMLYASICHTDVL-SSKGFPL----------PLFPRVLGHEG   75 (332)
Q Consensus        12 ~~~~~a~~~~~~~~~-----l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~g~~~~----------~~~p~v~G~e~   75 (332)
                      |.+|||++++++++|     ++..++|.|+|+++||||||++++||++|++ +.|.++.          ...|.++|+|+
T Consensus         1 m~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~   80 (175)
T d1gu7a1           1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (175)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccccccc
Confidence            679999999998875     4445677778899999999999999999998 7776543          35788999999


Q ss_pred             eEEEEEeCCCCCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeE
Q 043260           76 VGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYM  155 (332)
Q Consensus        76 ~G~Vv~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~  155 (332)
                      +|+|++.|.++..++.||+|.....                            .                  .|+|+||+
T Consensus        81 ~g~V~~~~~~~~~~~~g~~v~~~~~----------------------------~------------------~g~~aey~  114 (175)
T d1gu7a1          81 LFEVIKVGSNVSSLEAGDWVIPSHV----------------------------N------------------FGTWRTHA  114 (175)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS----------------------------C------------------CCCSBSEE
T ss_pred             ccccccccccccccccccceecccc----------------------------c------------------ccccccee
Confidence            9999999999999999999984321                            1                  24699999


Q ss_pred             EecCCceEEcCCCCChhhhhhcccchhhhHHHHHH-hhCCCCCCEEEEEC-C-ChHHHHHHH
Q 043260          156 VVDANYVVKVDPSIDLSLAGFLSCGYSSGFGAAWK-EFKVEKGSSVAVFG-L-GAVGLGVMD  214 (332)
Q Consensus       156 ~v~~~~v~~lP~~~~~~~aa~l~~~~~ta~~al~~-~~~~~~g~~vlV~G-~-g~vG~~~~~  214 (332)
                      .+++++++++|++++.+.++  .+...|||+++.. ..++++|++|||.| + |++|++++|
T Consensus       115 ~v~~~~~~~iP~~~~~~~a~--~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         115 LGNDDDFIKLPNPAQSKANG--KPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             EEEGGGEEEECCHHHHHHTT--CSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             eehhhhccCCCccchhhhhc--cchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence            99999999999987644443  4577788887753 46799999999997 4 679987765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.8e-24  Score=177.86  Aligned_cols=151  Identities=17%  Similarity=0.349  Sum_probs=127.0

Q ss_pred             CCChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeC
Q 043260          168 SIDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFIN  247 (332)
Q Consensus       168 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~  247 (332)
                      +.+++.+|.++|+..|+|+++ +.+++++|++|+|+|+|++|++++|+++.+|+ ++|+++.+++|+++++++|++++++
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~   80 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVN   80 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEE
T ss_pred             cccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEE
Confidence            456788888999999999998 67899999999999999999999999999999 7888999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          248 PDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      +.+   .+..     ....+++|++||++|++..+..++++++++ |+++.+|.+.+....++...++. +++|.|++.+
T Consensus        81 ~~~---~~~~-----~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~  151 (168)
T d1uufa2          81 SRN---ADEM-----AAHLKSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIG  151 (168)
T ss_dssp             TTC---HHHH-----HTTTTCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC-------CHHHHHTTTCEEEECCSC
T ss_pred             Cch---hhHH-----HHhcCCCceeeeeeecchhHHHHHHHHhcC-CEEEEeccCCCCcccccHHHHHHCCcEEEEEeec
Confidence            876   4322     233458999999999987899999999998 99999998776556778888777 9999999987


Q ss_pred             ccc
Q 043260          327 GIK  329 (332)
Q Consensus       327 ~~~  329 (332)
                      +..
T Consensus       152 ~~~  154 (168)
T d1uufa2         152 GIP  154 (168)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            654

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.91  E-value=4.5e-24  Score=179.73  Aligned_cols=150  Identities=20%  Similarity=0.182  Sum_probs=133.2

Q ss_pred             hhcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          175 GFLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       175 a~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      +++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +||++++++++.++++++|+++++++.+   
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~---   83 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT---   83 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS---
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccccc---
Confidence            4577899999999999999999999999998 9999999999999999 9999999999999999999999999988   


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC------CcccCChHhHhc-CcEEEEeecc
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE------AKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~------~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      +++.+.+.+.+.+.|+|+|||++|. +.+++++++++++ |+++.+|....      .+..+++..+++ ++++.|++..
T Consensus        84 ~~~~~~~~~~~~~~Gvd~v~D~vG~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~  161 (182)
T d1v3va2          84 VNSLEEALKKASPDGYDCYFDNVGG-EFLNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVY  161 (182)
T ss_dssp             CSCHHHHHHHHCTTCEEEEEESSCH-HHHHHHGGGEEEE-EEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGG
T ss_pred             ccHHHHHHHHhhcCCCceeEEecCc-hhhhhhhhhccCC-CeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEe
Confidence            8888888888888899999999997 6899999999998 99999996432      345677777777 9999999887


Q ss_pred             cccc
Q 043260          327 GIKT  330 (332)
Q Consensus       327 ~~~~  330 (332)
                      .+.+
T Consensus       162 ~~~~  165 (182)
T d1v3va2         162 RWQG  165 (182)
T ss_dssp             GCCH
T ss_pred             ccCh
Confidence            7643

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.90  E-value=1.7e-23  Score=173.53  Aligned_cols=151  Identities=20%  Similarity=0.355  Sum_probs=136.5

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      +|+++||++++++.|||+++ +..++++|++|||+|+|++|++++++++..|+ +|++++++++|++.++++|++.++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence            58999999999999999998 57899999999999999999999999999999 89999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeeccc
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFGG  327 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~~  327 (332)
                      .+   +++.+.+++.+.+  .|.++++++++..+..++++++++ |+++.+|... ...+++...++. +++|+|+..++
T Consensus        79 ~~---~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~a~~~l~~~-G~i~~~g~~~-~~~~~~~~~~~~~~~~i~gs~~~~  151 (168)
T d1rjwa2          79 LK---EDAAKFMKEKVGG--VHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPP-EEMPIPIFDTVLNGIKIIGSIVGT  151 (168)
T ss_dssp             TT---SCHHHHHHHHHSS--EEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCS-SEEEEEHHHHHHTTCEEEECCSCC
T ss_pred             cc---chhhhhcccccCC--CceEEeecCCHHHHHHHHHHhccC-CceEeccccc-CCCCCCHHHHHHCCcEEEEEeeCC
Confidence            98   8888889888865  666667788888999999999998 9999999887 567788888777 99999998775


Q ss_pred             c
Q 043260          328 I  328 (332)
Q Consensus       328 ~  328 (332)
                      +
T Consensus       152 ~  152 (168)
T d1rjwa2         152 R  152 (168)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.89  E-value=8.7e-24  Score=179.05  Aligned_cols=158  Identities=13%  Similarity=0.150  Sum_probs=130.6

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEE-CC-ChHHHHHHHHHHHcCCCeEEEEcCCcc----hHHHHHHcCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVF-GL-GAVGLGVMDRARIQGAAKIIGIDKNPC----RKDKGEAFGM  242 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~-G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~----~~~~~~~lga  242 (332)
                      +|+++||++++++.|||+++.+..++++|++|+|+ |+ |++|++++|+|+.+|+ +||++.++.+    +.+.++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            68999999999999999999888999999999997 65 9999999999999999 8888765543    4557789999


Q ss_pred             CeeeCCCCCCCchHHHHHHHhc--CCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcE
Q 043260          243 TDFINPDDEPNKSISELVKEMT--HGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRN  319 (332)
Q Consensus       243 ~~v~~~~~~~~~~~~~~~~~~~--~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~  319 (332)
                      ++++++++....++.+.+++.+  .+.++|+|||++|+ +.+..++++|+++ |+++.+|...+.+.+++...+++ +++
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~-~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~l~~k~~~  157 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGG-KSSTGIARKLNNN-GLMLTYGGMSFQPVTIPTSLYIFKNFT  157 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCH-HHHHHHHHTSCTT-CEEEECCCCSSCCEEECHHHHHHSCCE
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCc-chhhhhhhhhcCC-cEEEEECCccCCCccCcHHHHHHCCcE
Confidence            9999875422344445555543  24589999999997 4889999999998 99999998776778889888777 999


Q ss_pred             EEEeeccccc
Q 043260          320 LKGTIFGGIK  329 (332)
Q Consensus       320 i~g~~~~~~~  329 (332)
                      +.|++++.+.
T Consensus       158 i~G~~~~~~~  167 (189)
T d1gu7a2         158 SAGFWVTELL  167 (189)
T ss_dssp             EEECCHHHHH
T ss_pred             EEEEEehHhh
Confidence            9999887653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=7.7e-24  Score=176.03  Aligned_cols=150  Identities=19%  Similarity=0.280  Sum_probs=125.7

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~  248 (332)
                      +|.+.||.++|+..|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+ +|++++++++|+++++++|+++++++
T Consensus         1 lp~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~   78 (168)
T d1piwa2           1 IPSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIAT   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEG
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeec
Confidence            35678999999999999998 56899999999999999999999999999999 89999999999999999999999987


Q ss_pred             CCCCCchHHHHHHHhcCCCCccEEEEcCCChH--HHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeec
Q 043260          249 DDEPNKSISELVKEMTHGTGVDYGFECTGVAS--LISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIF  325 (332)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~--~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~  325 (332)
                      .+  ..++   .++.  ..++|+++|++++..  .++.++++++++ |+++.+|.+. ...+++...++. +++|.|+..
T Consensus        79 ~~--~~~~---~~~~--~~~~d~vi~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~k~~~i~Gs~~  149 (168)
T d1piwa2          79 LE--EGDW---GEKY--FDTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPE-QHEMLSLKPYGLKAVSISYSAL  149 (168)
T ss_dssp             GG--TSCH---HHHS--CSCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCC-SSCCEEECGGGCBSCEEEECCC
T ss_pred             cc--hHHH---HHhh--hcccceEEEEecCCccchHHHHHHHhhcc-ceEEEecccc-ccccccHHHHHhCCcEEEEEee
Confidence            65  1222   2223  237999999988643  467899999998 9999999877 445666666666 999999988


Q ss_pred             cccc
Q 043260          326 GGIK  329 (332)
Q Consensus       326 ~~~~  329 (332)
                      +++.
T Consensus       150 g~~~  153 (168)
T d1piwa2         150 GSIK  153 (168)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            7754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=9.5e-22  Score=167.07  Aligned_cols=146  Identities=25%  Similarity=0.297  Sum_probs=128.0

Q ss_pred             hhhhhcccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC
Q 043260          172 SLAGFLSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       172 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  251 (332)
                      ++.+.|..+++|||+++ +.+++++|++|||+|+|++|++++++++.+|+++|++++.+++|+++++++|+++++++.+ 
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-   79 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD-   79 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-
Confidence            46778889999999998 6799999999999999999999999999999989999999999999999999999999988 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCC---------------hHHHHHHHHHhccCCcEEEEEcCCCC-C----------
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGV---------------ASLISEALEATKLGKGKVMAIGAANE-A----------  305 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~---------------~~~~~~~~~~l~~~~G~~v~~G~~~~-~----------  305 (332)
                        .++.+.+.+++++.|+|++||++|.               .++++.++++++++ |+++++|.+.. .          
T Consensus        80 --~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g-G~v~~~G~~~~~~~~~~~~~~~~  156 (195)
T d1kola2          80 --TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKI  156 (195)
T ss_dssp             --SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSCCCSCCTTCSSHHHHT
T ss_pred             --cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC-CEEEEeeecCCCcccchhhhhhc
Confidence              8999999999999999999999983               36899999999998 99999998654 2          


Q ss_pred             -cccCChHhHhc-CcEEEE
Q 043260          306 -KVPLNFPAIAL-GRNLKG  322 (332)
Q Consensus       306 -~~~~~~~~~~~-~~~i~g  322 (332)
                       ..++++..++. +++|.+
T Consensus       157 ~~~~~~~~~~~~k~~~i~~  175 (195)
T d1kola2         157 GSLSIRFGLGWAKSHSFHT  175 (195)
T ss_dssp             TCCCCCHHHHHHTTCEEEE
T ss_pred             CceeeeHHHHHhhcceecc
Confidence             23445444444 777765

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.5e-21  Score=163.42  Aligned_cols=155  Identities=15%  Similarity=0.186  Sum_probs=121.5

Q ss_pred             CChhhhhhcccchhhhHHHHHHhhCCCCC--CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHHcCCCe
Q 043260          169 IDLSLAGFLSCGYSSGFGAAWKEFKVEKG--SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK-DKGEAFGMTD  244 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g--~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~-~~~~~lga~~  244 (332)
                      +|+.+.| ++++..|||+++.+..++++|  ++|||+|+ |++|++++|+|+.+|++.|+.++.++++. ++++++|+|.
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            5566655 667899999999999999988  88999997 99999999999999996777777666655 4667899999


Q ss_pred             eeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC--CcccC----C---hHhHh
Q 043260          245 FINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE--AKVPL----N---FPAIA  315 (332)
Q Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~--~~~~~----~---~~~~~  315 (332)
                      ++|+.+   +++.+.+++.++ .|+|+|||++|+ +.++.++++++++ |+++.+|...+  ...+.    .   ...+.
T Consensus        81 vi~~~~---~~~~~~~~~~~~-~GvDvv~D~vGg-~~~~~~~~~l~~~-G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~  154 (187)
T d1vj1a2          81 AVNYKT---GNVAEQLREACP-GGVDVYFDNVGG-DISNTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPPAVEAIRK  154 (187)
T ss_dssp             EEETTS---SCHHHHHHHHCT-TCEEEEEESSCH-HHHHHHHTTEEEE-EEEEEC------------CCCCCHHHHHHHH
T ss_pred             Eeeccc---hhHHHHHHHHhc-cCceEEEecCCc-hhHHHHhhhcccc-ccEEEeccccccccccccCCchHHHHHHHHH
Confidence            999998   899999999886 599999999997 5899999999998 99999997543  11111    1   12222


Q ss_pred             -cCcEEEEeecccccc
Q 043260          316 -LGRNLKGTIFGGIKT  330 (332)
Q Consensus       316 -~~~~i~g~~~~~~~~  330 (332)
                       +++++.|+.+..+.+
T Consensus       155 ~k~i~~~g~~~~~~~~  170 (187)
T d1vj1a2         155 ERNITRERFTVLNYKD  170 (187)
T ss_dssp             HTTCEEEECCGGGCGG
T ss_pred             hcceEEEEeEecchHH
Confidence             388999998776654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=6.4e-22  Score=165.37  Aligned_cols=149  Identities=15%  Similarity=0.176  Sum_probs=124.7

Q ss_pred             CChhhhhhcccchhhhHHHHH---HhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe
Q 043260          169 IDLSLAGFLSCGYSSGFGAAW---KEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD  244 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~---~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~  244 (332)
                      +|+.+||.++++..|||++++   +.....++++|||+|+ |++|++++|+|+.+|+ +||++.+++++.+.++++|+|+
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            578999999999999998764   2333445669999987 9999999999999999 8999999999999999999999


Q ss_pred             eeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEe
Q 043260          245 FINPDDEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGT  323 (332)
Q Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~  323 (332)
                      ++++++   .++.+   .+ ....+|.++|++++ ..+...+++++++ |+++.+|...+...+++...++. +++|.|+
T Consensus        80 vi~~~~---~~~~~---~l-~~~~~~~vvD~Vgg-~~~~~~l~~l~~~-Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~  150 (177)
T d1o89a2          80 VLPRDE---FAESR---PL-EKQVWAGAIDTVGD-KVLAKVLAQMNYG-GCVAACGLAGGFTLPTTVMPFILRNVRLQGV  150 (177)
T ss_dssp             EEEGGG---SSSCC---SS-CCCCEEEEEESSCH-HHHHHHHHTEEEE-EEEEECCCTTCSCCCCCSHHHHHHCCEEEEC
T ss_pred             cccccc---HHHHH---HH-HhhcCCeeEEEcch-HHHHHHHHHhccc-cceEeecccCCccccccHHHHHHCCCeEEEE
Confidence            999876   33322   22 23368999999998 4899999999998 99999998887778888877776 9999997


Q ss_pred             eccc
Q 043260          324 IFGG  327 (332)
Q Consensus       324 ~~~~  327 (332)
                      ....
T Consensus       151 ~~~~  154 (177)
T d1o89a2         151 DSVM  154 (177)
T ss_dssp             CSSS
T ss_pred             eccc
Confidence            6543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=3.4e-21  Score=159.38  Aligned_cols=139  Identities=18%  Similarity=0.155  Sum_probs=116.0

Q ss_pred             chhhhH---HHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCch
Q 043260          180 GYSSGF---GAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKS  255 (332)
Q Consensus       180 ~~~ta~---~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~  255 (332)
                      +..|||   ++|.+....+++++|||+|+ |++|++++|+|+.+|+ +||.+.++++|.++++++|++.++++++     
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~-----   77 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED-----   77 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH-----
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccc-----
Confidence            344555   55555566778889999997 9999999999999999 9999999999999999999999987642     


Q ss_pred             HHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc-CcEEEEeecc
Q 043260          256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL-GRNLKGTIFG  326 (332)
Q Consensus       256 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~-~~~i~g~~~~  326 (332)
                      +..+..+.+.+.++|+|||++|+ +.++.++++|+++ |+++.+|...+...++++..++. +++++|+...
T Consensus        78 ~~~~~~~~~~~~gvd~vid~vgg-~~~~~~~~~l~~~-G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~~  147 (167)
T d1tt7a2          78 VYDGTLKALSKQQWQGAVDPVGG-KQLASLLSKIQYG-GSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSV  147 (167)
T ss_dssp             HCSSCCCSSCCCCEEEEEESCCT-HHHHHHHTTEEEE-EEEEECCCSSCSCEEECSHHHHTSCCEEEECCSS
T ss_pred             hhchhhhcccCCCceEEEecCcH-HHHHHHHHHhccC-ceEEEeeccCCCcccCCHHHHHHCCcEEEEEecC
Confidence            22233344556699999999998 5999999999998 99999999988778888888877 9999997543

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.59  E-value=1.3e-14  Score=116.51  Aligned_cols=134  Identities=18%  Similarity=0.151  Sum_probs=99.7

Q ss_pred             cceeeeEEEecC--CCC----eEEEEEecCCCCCCeEEEEEeeeecCcccccccCCCCCCCCCcccccceeEEEEEeCCC
Q 043260           12 IYYAAAVVCWGE--GEP----WKVEEIQVEPPKATEVRFKMLYASICHTDVLSSKGFPLPLFPRVLGHEGVGMVESIGDE   85 (332)
Q Consensus        12 ~~~~~a~~~~~~--~~~----l~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   85 (332)
                      |++.|+|++...  +.+    +++++.++|+|++||||||++|.++++.........   +..-++..+.+|+|++  |+
T Consensus         1 M~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~~---~~g~~~~g~~vg~Vv~--S~   75 (147)
T d1v3va1           1 MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKRL---KEGAVMMGQQVARVVE--SK   75 (147)
T ss_dssp             CCEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGGGS---CTTSBCCCCEEEEEEE--ES
T ss_pred             CcccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEccccccccccc---ccCCccccceEEEEEE--eC
Confidence            567899999765  322    899999999999999999999999987655532222   2223456688999998  67


Q ss_pred             CCCCCCCCEEEeecccCCCCCcccccCCcccCCCCccccccccCCCCCcccccccceecccccCCceeeEEecCCceEEc
Q 043260           86 VKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKV  165 (332)
Q Consensus        86 v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~G~~a~~~~v~~~~v~~l  165 (332)
                      .++|++||+|+..                                                  ++|+||.+++++.+.++
T Consensus        76 ~~~f~~GD~V~g~--------------------------------------------------~gw~ey~v~~~~~l~kv  105 (147)
T d1v3va1          76 NSAFPAGSIVLAQ--------------------------------------------------SGWTTHFISDGKGLEKL  105 (147)
T ss_dssp             CTTSCTTCEEEEC--------------------------------------------------CCSBSEEEECSSSCEEC
T ss_pred             CCcccCCCEEEEc--------------------------------------------------cCCEeEEEeccceeeEc
Confidence            7889999999821                                                  34999999999999999


Q ss_pred             CCCCChh-----hhhhcccchhh-hHHHHHHhhCCCCCCEEEE
Q 043260          166 DPSIDLS-----LAGFLSCGYSS-GFGAAWKEFKVEKGSSVAV  202 (332)
Q Consensus       166 P~~~~~~-----~aa~l~~~~~t-a~~al~~~~~~~~g~~vlV  202 (332)
                      |+.++..     ..+++.....| ||..+.  ...+.|++||+
T Consensus       106 ~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~--~~~k~Getvv~  146 (147)
T d1v3va1         106 LTEWPDKKIQYHEHVTKGFENMPAAFIEML--NGANLGKAVVT  146 (147)
T ss_dssp             CTTCCTTSSCCCEEEEECGGGHHHHHHHHH--TTCCSSEEEEE
T ss_pred             cccccccccchhhhHhccccchHHHHHHhh--CCCCCCCEEEe
Confidence            8765432     34455556666 454553  34567999986

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=7.9e-14  Score=98.72  Aligned_cols=73  Identities=12%  Similarity=0.152  Sum_probs=66.2

Q ss_pred             CChhhhhhcccchhhhHHHHH---HhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC
Q 043260          169 IDLSLAGFLSCGYSSGFGAAW---KEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       169 ~~~~~aa~l~~~~~ta~~al~---~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      +|+++|+.++++..|||.+++   +....+++++|||+|+ |++|.+++|+++.+|+ +|+++.+++++.++++++||
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            578999999999999988765   3455689999999988 9999999999999999 99999999999999999985

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.05  E-value=8.1e-06  Score=66.03  Aligned_cols=104  Identities=22%  Similarity=0.307  Sum_probs=75.9

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCC-----------------CCCchHHHH
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDD-----------------EPNKSISEL  259 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~-----------------~~~~~~~~~  259 (332)
                      ..+|+|+|+|.+|+.++..|+.+|+ .|.++|.+.++++.++++++..+.....                 +......+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~  107 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA  107 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence            4579999999999999999999999 9999999999999999998755421100                 000112233


Q ss_pred             HHHhcCCCCccEEEEcCCCh-----H-HHHHHHHHhccCCcEEEEEcCCCC
Q 043260          260 VKEMTHGTGVDYGFECTGVA-----S-LISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       260 ~~~~~~~~g~d~vid~~g~~-----~-~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      +.+...  .+|+||-++--+     . .-.+.++.++++ +.+|++....+
T Consensus       108 l~~~l~--~aDlVI~talipG~~aP~lit~~mv~~Mk~G-SVIVDvaidqG  155 (183)
T d1l7da1         108 VLKELV--KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAG  155 (183)
T ss_dssp             HHHHHT--TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGT
T ss_pred             HHHHHH--hhhhheeeeecCCcccceeehHHHHHhcCCC-cEEEEEeecCC
Confidence            333332  489999976532     1 236889999998 99999987655

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.03  E-value=7e-05  Score=59.42  Aligned_cols=103  Identities=16%  Similarity=0.186  Sum_probs=71.9

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      +...--.+.++||+|+|.+|.++++.+...|+++++++.|+.+|.+ +++++|. +++..     +++.+.+.      .
T Consensus        17 ~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~-~~~~~-----~~~~~~l~------~   84 (159)
T d1gpja2          17 RELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG-EAVRF-----DELVDHLA------R   84 (159)
T ss_dssp             HHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-EECCG-----GGHHHHHH------T
T ss_pred             HHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc-ccccc-----hhHHHHhc------c
Confidence            3444457889999999999999999999999988999999987754 7778885 34443     34444442      5


Q ss_pred             ccEEEEcCCChH------HHHHHHHHhccCC-cEEEEEcCCCC
Q 043260          269 VDYGFECTGVAS------LISEALEATKLGK-GKVMAIGAANE  304 (332)
Q Consensus       269 ~d~vid~~g~~~------~~~~~~~~l~~~~-G~~v~~G~~~~  304 (332)
                      +|+||.|++++.      .+...++.-..+. =.++.++.+..
T Consensus        85 ~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~  127 (159)
T d1gpja2          85 SDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRD  127 (159)
T ss_dssp             CSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCS
T ss_pred             CCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCCC
Confidence            899999999752      2333333222220 26888888764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.94  E-value=6e-06  Score=65.88  Aligned_cols=98  Identities=20%  Similarity=0.201  Sum_probs=74.3

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC--eeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT--DFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~--~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      +..+|+|+|+|.+|+.+++.|+.+|+ .|.++|.+.++++.+++....  ..+..+.   +.+.+.++      .+|+||
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~---~~l~~~~~------~aDivI  100 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETAVA------EADLLI  100 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHHHH------TCSEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhhh---hhHHHhhc------cCcEEE
Confidence            34679999999999999999999999 999999999999988775432  2222222   33433332      489999


Q ss_pred             EcCCCh-----HH-HHHHHHHhccCCcEEEEEcCCCC
Q 043260          274 ECTGVA-----SL-ISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       274 d~~g~~-----~~-~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .++--+     .. -.+.++.++++ +.+|++....+
T Consensus       101 ~aalipG~~aP~lIt~~mv~~Mk~G-SVIVDvaidqG  136 (168)
T d1pjca1         101 GAVLVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQG  136 (168)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTC
T ss_pred             EeeecCCcccCeeecHHHHhhcCCC-cEEEEeecCCC
Confidence            986542     12 36889999998 99999987665

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.90  E-value=4.7e-05  Score=65.19  Aligned_cols=107  Identities=18%  Similarity=0.194  Sum_probs=73.5

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCeeeCCCCC-CCchHHH---HHHHhcCCCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTDFINPDDE-PNKSISE---LVKEMTHGTG  268 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~v~~~~~~-~~~~~~~---~~~~~~~~~g  268 (332)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+++++++++++. .++++.......-+. +.++..+   .+.+..+  +
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g--~   80 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLG--T   80 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHC--S
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhC--C
Confidence            36889999998 9999999999999999 99999999988764 466775543321111 1223322   3333332  5


Q ss_pred             ccEEEEcCCCh-------------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          269 VDYGFECTGVA-------------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       269 ~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .|++++++|..                         ...+.++..++..+|+++.+++...
T Consensus        81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~  141 (253)
T d1hxha_          81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSS  141 (253)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhh
Confidence            89999999852                         1245566667654499999987654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.89  E-value=6.6e-05  Score=64.03  Aligned_cols=105  Identities=20%  Similarity=0.209  Sum_probs=75.4

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHH---HHHHhcCCCCc
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISE---LVKEMTHGTGV  269 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~---~~~~~~~~~g~  269 (332)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+++.+...+ .|..+  .++..+   .+.+..+  +.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G--~i   77 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFFQVDLED--ERERVRFVEEAAYALG--RV   77 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEEECCTTC--HHHHHHHHHHHHHHHS--CC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEEEEeCCC--HHHHHHHHHHHHHhcC--CC
Confidence            47899999998 9999999999999999 99999999999888888876543 23332  233333   3333333  58


Q ss_pred             cEEEEcCCCh-------------------------HHHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          270 DYGFECTGVA-------------------------SLISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       270 d~vid~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      |++|+++|..                         ...+.++..+.+. +|+++.+++...
T Consensus        78 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~  138 (248)
T d2d1ya1          78 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQG  138 (248)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             CeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccc
Confidence            9999998852                         1234555666543 389999987654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=5.5e-05  Score=64.62  Aligned_cols=104  Identities=22%  Similarity=0.268  Sum_probs=71.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCCeee--CCCCCCCchHHHHHH---HhcCCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMTDFI--NPDDEPNKSISELVK---EMTHGTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~~v~--~~~~~~~~~~~~~~~---~~~~~~g  268 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+.+ ++....+  |..+  .++..+.+.   +..+  +
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~~~~~~g--~   79 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ--EDDVKTLVSETIRRFG--R   79 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHS--C
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEccCCC--HHHHHHHHHHHHHhcC--C
Confidence            6899999998 9999999999999999 99999999998876654 4432222  3322  233333332   3332  5


Q ss_pred             ccEEEEcCCCh--------------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          269 VDYGFECTGVA--------------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       269 ~d~vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .|++|+++|..                          ...+.++..+++++|+++.+++...
T Consensus        80 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~  141 (250)
T d1ydea1          80 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVG  141 (250)
T ss_dssp             CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHH
T ss_pred             CCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccc
Confidence            89999998842                          1234555566554489999887543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.74  E-value=7.8e-05  Score=59.58  Aligned_cols=73  Identities=18%  Similarity=0.236  Sum_probs=56.0

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCeeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      +...+.++++|||+|+|+.+.+++..++..|+++|.++.|+.+|.+.+ +.++...+ +...               ...
T Consensus        10 ~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~-~~~~---------------~~~   73 (167)
T d1npya1          10 EKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYI-NSLE---------------NQQ   73 (167)
T ss_dssp             HHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEE-SCCT---------------TCC
T ss_pred             HHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhh-hccc---------------ccc
Confidence            556677889999999999999999999999988999999999887655 44554332 2211               125


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|+||+|++-
T Consensus        74 ~DliINaTpi   83 (167)
T d1npya1          74 ADILVNVTSI   83 (167)
T ss_dssp             CSEEEECSST
T ss_pred             hhhheecccc
Confidence            8999998763

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=0.0001  Score=62.53  Aligned_cols=104  Identities=22%  Similarity=0.366  Sum_probs=70.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCe---eeCCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTD---FINPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~---v~~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+ ++++...   ..|..+  .++..+.+.   +.. + 
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~-g-   77 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTD--PASIESVLEKIRAEF-G-   77 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHT-C-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecC--HHHhhhhhhhhhccc-C-
Confidence            5889999998 9999999999999999 999999999887644 5565432   233333  233333333   333 2 


Q ss_pred             CccEEEEcCCCh-------------------------HHHHHHHHHhcc-CCcEEEEEcCCCC
Q 043260          268 GVDYGFECTGVA-------------------------SLISEALEATKL-GKGKVMAIGAANE  304 (332)
Q Consensus       268 g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~G~~~~  304 (332)
                      +.|++++++|..                         ...+.++..+.+ ++|+++.+++...
T Consensus        78 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~  140 (243)
T d1q7ba_          78 EVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVG  140 (243)
T ss_dssp             SCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHH
T ss_pred             CcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhh
Confidence            699999998753                         123455556533 2389999987554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00027  Score=59.89  Aligned_cols=104  Identities=17%  Similarity=0.189  Sum_probs=71.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee---eCCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF---INPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~~~---~~~  264 (332)
                      .|+++||+|+ +++|...+..+...|+ +|+++++++++++.+    ++.|....   .|..+  .++..+.+.   +..
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN--REDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHHc
Confidence            6899999998 9999999999999999 999999999887643    34554422   23333  233333333   333


Q ss_pred             CCCCccEEEEcCCCh-------------------------HHHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          265 HGTGVDYGFECTGVA-------------------------SLISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       265 ~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                       + ..|++++++|..                         ...+.++..+.++ .|+++.+++..+
T Consensus        83 -g-~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~  146 (244)
T d1yb1a_          83 -G-DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAG  146 (244)
T ss_dssp             -C-CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-
T ss_pred             -C-CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchh
Confidence             2 599999999863                         1234455555443 378999988775

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.65  E-value=0.00015  Score=61.98  Aligned_cols=104  Identities=19%  Similarity=0.231  Sum_probs=70.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCee---eCCCCCCCchHHHHH---HHhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTDF---INPDDEPNKSISELV---KEMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~v---~~~~~~~~~~~~~~~---~~~~~~~  267 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++. +++++....   .|..+  .++..+.+   .+..+  
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g--   78 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI--EEDWQRVVAYAREEFG--   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC--HHHHHHHHHHHHHHHS--
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEcccCC--HHHHHHHHHHHHHHcC--
Confidence            6899999998 9999999999999999 99999999988764 456664322   23322  23333333   33333  


Q ss_pred             CccEEEEcCCCh-------------------------HHHHHHHHHhcc-CCcEEEEEcCCCC
Q 043260          268 GVDYGFECTGVA-------------------------SLISEALEATKL-GKGKVMAIGAANE  304 (332)
Q Consensus       268 g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~G~~~~  304 (332)
                      +.|++|+++|..                         ...+.++..+.+ ++|++|.+++...
T Consensus        79 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~  141 (254)
T d1hdca_          79 SVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAG  141 (254)
T ss_dssp             CCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             CccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchh
Confidence            599999998853                         122344444333 2399999987654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.60  E-value=0.0003  Score=59.85  Aligned_cols=103  Identities=17%  Similarity=0.314  Sum_probs=70.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-----HHHcCCCee---eCCCCCCCchHHH---HHHHh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-----GEAFGMTDF---INPDDEPNKSISE---LVKEM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-----~~~lga~~v---~~~~~~~~~~~~~---~~~~~  263 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.     .++.|.+..   .|..+  .++..+   .+.+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN--YEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            5889999998 9999999999999999 99999999887653     234565432   23333  233333   33333


Q ss_pred             cCCCCccEEEEcCCCh-------------------------HHHHHHHHHhccC-CcEEEEEcCCC
Q 043260          264 THGTGVDYGFECTGVA-------------------------SLISEALEATKLG-KGKVMAIGAAN  303 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~G~~~  303 (332)
                      .+  +.|++|+++|..                         ...+.++..+.+. +|+++.+++..
T Consensus        81 ~g--~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~  144 (251)
T d1vl8a_          81 FG--KLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLT  144 (251)
T ss_dssp             HS--CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGG
T ss_pred             cC--CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccch
Confidence            33  599999998852                         1345666677543 37999987643

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.59  E-value=2.2e-05  Score=65.68  Aligned_cols=114  Identities=17%  Similarity=0.197  Sum_probs=78.0

Q ss_pred             cccchhhhHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHHcCCCeeeCCCCCC
Q 043260          177 LSCGYSSGFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDK----GEAFGMTDFINPDDEP  252 (332)
Q Consensus       177 l~~~~~ta~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~----~~~lga~~v~~~~~~~  252 (332)
                      +..+...|.  +.+..++++|++||.+|+|. |..++.+++..|. +|+.++.+++-.+.    ++++|.+.+.....  
T Consensus        61 is~P~~~a~--ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g--  134 (215)
T d1jg1a_          61 VSAPHMVAI--MLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILG--  134 (215)
T ss_dssp             ECCHHHHHH--HHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEES--
T ss_pred             hhhhhhHHH--HHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeEEEEC--
Confidence            333444444  34778999999999999977 8888888888885 89999998765443    45577664432222  


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEE-EcCC
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMA-IGAA  302 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~-~G~~  302 (332)
                       +..    ........||.|+-..+........++.|+++ |+++. +|..
T Consensus       135 -d~~----~g~~~~~pfD~Iiv~~a~~~ip~~l~~qL~~g-GrLv~pv~~~  179 (215)
T d1jg1a_         135 -DGS----KGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIPVGSY  179 (215)
T ss_dssp             -CGG----GCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEECSS
T ss_pred             -ccc----cCCcccCcceeEEeecccccCCHHHHHhcCCC-CEEEEEEccC
Confidence             110    11122336999998877765567889999998 99886 4443

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00015  Score=61.60  Aligned_cols=104  Identities=15%  Similarity=0.173  Sum_probs=71.2

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCee--eCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDF--INPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v--~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      -.|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+ ++++....  .|..+   .+-.+.+.+..+  ..|
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~g--~iD   78 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD---WEATERALGSVG--PVD   78 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTTCC--CCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHHhC--Cce
Confidence            37899999998 9999999999999999 999999999887744 55554332  34433   333333333332  589


Q ss_pred             EEEEcCCCh-------------------------HHHHHHHH-Hhcc-CCcEEEEEcCCCC
Q 043260          271 YGFECTGVA-------------------------SLISEALE-ATKL-GKGKVMAIGAANE  304 (332)
Q Consensus       271 ~vid~~g~~-------------------------~~~~~~~~-~l~~-~~G~~v~~G~~~~  304 (332)
                      ++++++|..                         ...+.++. ++++ .+|+++.+++...
T Consensus        79 ilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~  139 (244)
T d1pr9a_          79 LLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCS  139 (244)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGG
T ss_pred             EEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccc
Confidence            999998853                         12334444 3332 2389999987654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.57  E-value=0.00032  Score=59.95  Aligned_cols=78  Identities=22%  Similarity=0.271  Sum_probs=55.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee---eCCCCCCCchHHH---HHHHhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF---INPDDEPNKSISE---LVKEMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~---~~~~~~  264 (332)
                      +|+++||+|+ +++|.++++.+...|+ +|+++++++++++.+    ++.|.+..   .|..+  .++..+   .+.+..
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS--EEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            6899999998 9999999999999999 999999999887644    33454422   23332  233333   333333


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  +.|++|++.|.
T Consensus        81 g--~iDilVnnaG~   92 (260)
T d1zema1          81 G--KIDFLFNNAGY   92 (260)
T ss_dssp             S--CCCEEEECCCC
T ss_pred             C--CCCeehhhhcc
Confidence            3  59999998874

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.56  E-value=0.00036  Score=59.65  Aligned_cols=105  Identities=19%  Similarity=0.259  Sum_probs=69.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee---eCCCCCCCchHHHHHHH---hc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF---INPDDEPNKSISELVKE---MT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~~~~---~~  264 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+    ++.|....   .|..+  .++..+.+.+   ..
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS--RSERQELMNTVANHF   83 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCC--HHHHHHHHHHHHHHh
Confidence            6899999998 9999999999999999 999999998887643    33444322   23322  2333333333   22


Q ss_pred             CCCCccEEEEcCCCh-------------------------HHHHHHHHHhcc-CCcEEEEEcCCCC
Q 043260          265 HGTGVDYGFECTGVA-------------------------SLISEALEATKL-GKGKVMAIGAANE  304 (332)
Q Consensus       265 ~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~G~~~~  304 (332)
                      ++ ..|+++++.|..                         ...+.++..+.+ .+|+++.+++...
T Consensus        84 ~~-~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~  148 (259)
T d2ae2a_          84 HG-KLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSG  148 (259)
T ss_dssp             TT-CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGG
T ss_pred             CC-CceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccc
Confidence            32 589999998852                         112344444433 2389999987654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.51  E-value=1.1e-05  Score=67.37  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=71.4

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHH----cCCCeee-CCCCCCCchHHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEA----FGMTDFI-NPDDEPNKSISELVK  261 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~----lga~~v~-~~~~~~~~~~~~~~~  261 (332)
                      +.+..++++|++||-+|+|. |..++.+++..|. .+|+.++.+++..+.+++    .+.+.+. ...+     .   ..
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d-----~---~~  137 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGD-----G---YY  137 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC-----G---GG
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCc-----h---HH
Confidence            34778999999999999987 8888889988763 489999999988776644    3443222 1111     0   00


Q ss_pred             HhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEE
Q 043260          262 EMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMA  298 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~  298 (332)
                      .......||+|+...+-.......++.|+++ |+++.
T Consensus       138 ~~~~~~~fD~I~~~~~~~~~p~~l~~~LkpG-G~lv~  173 (213)
T d1dl5a1         138 GVPEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIV  173 (213)
T ss_dssp             CCGGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEE
T ss_pred             ccccccchhhhhhhccHHHhHHHHHHhcCCC-cEEEE
Confidence            1111235999999877655557788999998 99887

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=0.00019  Score=60.47  Aligned_cols=102  Identities=20%  Similarity=0.181  Sum_probs=67.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC---CCchHHHHHHHhcCCCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE---PNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~---~~~~~~~~~~~~~~~~g~d~  271 (332)
                      +|++|||+|+ +++|.+.++.+...|+ +|+.+++++.+..     .....+.....   ..+.....+.+..+..+.|+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~   74 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   74 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccc-----cccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence            5899999998 9999999999999999 9999988765421     11111111110   11223334444444446999


Q ss_pred             EEEcCCCh--------------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          272 GFECTGVA--------------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       272 vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      +|+++|.-                          .....++..++++ |+++.+++...
T Consensus        75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-G~Iv~isS~~~  132 (236)
T d1dhra_          75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-GLLTLAGAKAA  132 (236)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGGG
T ss_pred             EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc-cceeEEccHHH
Confidence            99998731                          1234455677887 99999987654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.49  E-value=0.00039  Score=59.39  Aligned_cols=105  Identities=19%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe---eeCCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD---FINPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~---v~~~~~~~~~~~~~~~~---~~~  264 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+    ++.+...   ..|..+  .++..+.+.   +..
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL--RPEREKLMQTVSSMF   83 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCC--HHHHHHHHHHHHHHh
Confidence            6899999998 9999999999999999 999999998887643    2234332   123332  233333333   333


Q ss_pred             CCCCccEEEEcCCCh-------------------------HHHHHHHHHhcc-CCcEEEEEcCCCC
Q 043260          265 HGTGVDYGFECTGVA-------------------------SLISEALEATKL-GKGKVMAIGAANE  304 (332)
Q Consensus       265 ~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~G~~~~  304 (332)
                      ++ ..|++++++|..                         ...+.++..+.+ ++|+++.+++...
T Consensus        84 ~g-~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~  148 (259)
T d1xq1a_          84 GG-KLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAG  148 (259)
T ss_dssp             TT-CCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----
T ss_pred             CC-CcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccc
Confidence            33 589999998853                         112344444432 2389999987654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.48  E-value=0.00058  Score=55.43  Aligned_cols=76  Identities=16%  Similarity=0.229  Sum_probs=55.1

Q ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-c----CC-CeeeCCCCCCCchHHHHHHHhcCC
Q 043260          194 VEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-F----GM-TDFINPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       194 ~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-l----ga-~~v~~~~~~~~~~~~~~~~~~~~~  266 (332)
                      --+|+++||+|+ |++|..+++.+...|+ +|++++++.++.+.+.+ +    .. ....+..+   .   +.+.+..+ 
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~---~---~~~~~~~~-   91 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD---D---ASRAEAVK-   91 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS---H---HHHHHHTT-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhccc---H---HHHHHHhc-
Confidence            358899999998 9999999999999999 99999999988764422 2    21 22333333   1   23444443 


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                       ++|++|+++|.
T Consensus        92 -~iDilin~Ag~  102 (191)
T d1luaa1          92 -GAHFVFTAGAI  102 (191)
T ss_dssp             -TCSEEEECCCT
T ss_pred             -CcCeeeecCcc
Confidence             58999999874

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=0.00032  Score=59.32  Aligned_cols=77  Identities=14%  Similarity=0.126  Sum_probs=55.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCeee--CCCCCCCchHHHHHHHhcCCCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDFI--NPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v~--~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      .|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+ ++++....+  |..+   .+..+.+.+..+  +.|+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~g--~iDi   77 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD---WDATEKALGGIG--PVDL   77 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTTCC--CCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHHcC--CCeE
Confidence            6899999998 9999999999999999 999999998887644 455433332  3333   333333333332  5899


Q ss_pred             EEEcCCC
Q 043260          272 GFECTGV  278 (332)
Q Consensus       272 vid~~g~  278 (332)
                      +++++|.
T Consensus        78 lVnnAg~   84 (242)
T d1cyda_          78 LVNNAAL   84 (242)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999884

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.43  E-value=0.00067  Score=57.23  Aligned_cols=103  Identities=19%  Similarity=0.274  Sum_probs=70.4

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCee-e--CCCCCCCchHHHHH---HHhcCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTDF-I--NPDDEPNKSISELV---KEMTHG  266 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~v-~--~~~~~~~~~~~~~~---~~~~~~  266 (332)
                      -+|+++||+|+ +++|.+.++-+...|+ +|++++++.++++. .++++.+.. +  |..+  .++..+.+   .+..+ 
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~--~~~i~~~~~~i~~~~g-   78 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD--PKAVEAVFAEALEEFG-   78 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS--HHHHHHHHHHHHHHHS-
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCC--HHHHHHHHHHHHHHhC-
Confidence            36899999998 9999999999999999 99999999988764 466775432 2  3332  33333333   33333 


Q ss_pred             CCccEEEEcCCCh-------------------------HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          267 TGVDYGFECTGVA-------------------------SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       267 ~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                       +.|++|++++..                         ...+..+..+.++ +.++.++...
T Consensus        79 -~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~-~~i~~~ss~a  138 (241)
T d2a4ka1          79 -RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG-GSLVLTGSVA  138 (241)
T ss_dssp             -CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT-CEEEEECCCT
T ss_pred             -CccEeccccccccccchhhhhccccccccccccccccccccccccccccc-cceeeccccc
Confidence             589999988753                         1234455566666 6666666554

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.42  E-value=0.00077  Score=57.05  Aligned_cols=104  Identities=14%  Similarity=0.202  Sum_probs=69.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH--HHHHHcCCCee---eCCCCCCCchHHHH---HHHhcCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK--DKGEAFGMTDF---INPDDEPNKSISEL---VKEMTHG  266 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~--~~~~~lga~~v---~~~~~~~~~~~~~~---~~~~~~~  266 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.  +.+++.|....   .|..+  .++..+.   +.+..+ 
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~--~~~v~~~~~~~~~~~G-   79 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ--PGDVEAFGKQVISTFG-   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHHS-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCC--HHHHHHHHHHHHHHcC-
Confidence            5889999998 9999999999999999 999999876543  34566775432   23332  2333333   333333 


Q ss_pred             CCccEEEEcCCCh-------------------------HHHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          267 TGVDYGFECTGVA-------------------------SLISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       267 ~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                       +.|++++++|..                         ...+.++..+.+. +|+++.+++...
T Consensus        80 -~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~  142 (247)
T d2ew8a1          80 -RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTY  142 (247)
T ss_dssp             -CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             -CCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchh
Confidence             599999998853                         1223444455432 389999987654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.42  E-value=0.00015  Score=61.82  Aligned_cols=103  Identities=9%  Similarity=0.045  Sum_probs=71.8

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHH----cC-CCeeeCCCCCCCchHHHHHHHh
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEA----FG-MTDFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~----lg-a~~v~~~~~~~~~~~~~~~~~~  263 (332)
                      ...+++||++||=.|+|. |.++..+|+..|. .+|+.++.+++..+.+++    ++ .+.+-...    .+    +.+.
T Consensus        79 ~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~----~D----i~~~  149 (250)
T d1yb2a1          79 MRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR----SD----IADF  149 (250)
T ss_dssp             --CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC----SC----TTTC
T ss_pred             HHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEE----ee----eecc
Confidence            567899999999999977 7778888887653 489999999998887754    22 22221111    11    1222


Q ss_pred             cCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCC
Q 043260          264 THGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      .....||.||-....+ ..+..+.+.|+|+ |+++++...
T Consensus       150 ~~~~~fD~V~ld~p~p~~~l~~~~~~LKpG-G~lv~~~P~  188 (250)
T d1yb2a1         150 ISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLPN  188 (250)
T ss_dssp             CCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEESS
T ss_pred             cccceeeeeeecCCchHHHHHHHHHhcCCC-ceEEEEeCC
Confidence            3344799998666553 4689999999998 999987653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.0006  Score=58.12  Aligned_cols=79  Identities=20%  Similarity=0.325  Sum_probs=55.6

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCC-Ceee----CCCCCCCchH---HHHHH
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGM-TDFI----NPDDEPNKSI---SELVK  261 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga-~~v~----~~~~~~~~~~---~~~~~  261 (332)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+    ++.+. ..++    |..+  .++.   .+.+.
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~--~~~v~~~v~~~~   84 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN--EEDILSMFSAIR   84 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC--HHHHHHHHHHHH
Confidence            46789999998 9999999999999999 999999999887643    33332 2222    3333  2333   33344


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +..+  +.|++|+++|.
T Consensus        85 ~~~g--~iD~lVnnAg~   99 (257)
T d1xg5a_          85 SQHS--GVDICINNAGL   99 (257)
T ss_dssp             HHHC--CCSEEEECCCC
T ss_pred             HhcC--CCCEEEecccc
Confidence            4443  59999999886

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.41  E-value=0.00023  Score=60.32  Aligned_cols=78  Identities=18%  Similarity=0.248  Sum_probs=56.8

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCee-eCCCCCCCchHHHHH---HHhcCCCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDF-INPDDEPNKSISELV---KEMTHGTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v-~~~~~~~~~~~~~~~---~~~~~~~g~  269 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+ +++++..+ .|..+  .++..+.+   .+..+  +.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g--~i   78 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD--PASVERGFAEALAHLG--RL   78 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC--HHHHHHHHHHHHHHHS--SC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEEEEecCC--HHHHHHHHHHHHHhcC--Cc
Confidence            5789999998 9999999999999999 999999999888755 45665433 23332  23333333   33333  59


Q ss_pred             cEEEEcCCC
Q 043260          270 DYGFECTGV  278 (332)
Q Consensus       270 d~vid~~g~  278 (332)
                      |++|+++|.
T Consensus        79 DilVnnAG~   87 (242)
T d1ulsa_          79 DGVVHYAGI   87 (242)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEECCcc
Confidence            999999885

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.39  E-value=0.00053  Score=58.26  Aligned_cols=104  Identities=15%  Similarity=0.193  Sum_probs=68.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee---eCCCCCCCchHHHHHH---Hhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF---INPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~~~---~~~  264 (332)
                      +++++||+|+ +++|.+.++.+...|+ +|+++++++++++.+    ++.|.+..   .|..+  .++..+.+.   +..
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK--KEEISEVINKILTEH   85 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            4788899998 9999999999999999 999999998887643    34554422   23332  233333333   332


Q ss_pred             CCCCccEEEEcCCCh-------------------------HHHHHHHHHhcc-CCcEEEEEcCCCC
Q 043260          265 HGTGVDYGFECTGVA-------------------------SLISEALEATKL-GKGKVMAIGAANE  304 (332)
Q Consensus       265 ~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~G~~~~  304 (332)
                       + +.|++|++.|..                         ...+.++..+.+ ++|++|.+++..+
T Consensus        86 -g-~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~  149 (251)
T d2c07a1          86 -K-NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVG  149 (251)
T ss_dssp             -S-CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHH
T ss_pred             -C-CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHh
Confidence             2 689999988853                         122344444422 2399999987654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.0007  Score=57.53  Aligned_cols=104  Identities=16%  Similarity=0.175  Sum_probs=68.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc----CCCee----eCCCCCCCchHHHHHH---H
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF----GMTDF----INPDDEPNKSISELVK---E  262 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l----ga~~v----~~~~~~~~~~~~~~~~---~  262 (332)
                      .|+++||+|+ +++|.+.++.+...|+ +|++++++.++++.+ +++    +...+    .|..+  .++..+.+.   +
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   78 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD--QQQLRDTFRKVVD   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCC--HHHHHHHHHHHHH
Confidence            5889999998 9999999999999999 999999999887644 232    21111    23333  233333333   3


Q ss_pred             hcCCCCccEEEEcCCCh-----------------HHHHHHHHHhccC----CcEEEEEcCCCC
Q 043260          263 MTHGTGVDYGFECTGVA-----------------SLISEALEATKLG----KGKVMAIGAANE  304 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~-----------------~~~~~~~~~l~~~----~G~~v~~G~~~~  304 (332)
                      ..+  +.|++++++|..                 .....++..+.+.    +|+++.+++..+
T Consensus        79 ~~G--~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~  139 (254)
T d2gdza1          79 HFG--RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAG  139 (254)
T ss_dssp             HHS--CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGG
T ss_pred             HcC--CcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhh
Confidence            333  589999999863                 1233445555432    288999987654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.33  E-value=0.00024  Score=60.68  Aligned_cols=78  Identities=17%  Similarity=0.211  Sum_probs=57.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCCCee---eCCCCCCCchHHHHHH---HhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGMTDF---INPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga~~v---~~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++ .++++|....   .|..+  .++..+.+.   +..+  
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~~~~g--   78 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTD--QASIDRCVAELLDRWG--   78 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHS--
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEeeCCC--HHHHHHHHHHHHHHhC--
Confidence            5889999998 9999999999999999 9999999988876 4567775532   23333  233333333   3332  


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      +.|+++++.|.
T Consensus        79 ~iDilVnnAg~   89 (256)
T d1k2wa_          79 SIDILVNNAAL   89 (256)
T ss_dssp             CCCEEEECCCC
T ss_pred             CccEEEeeccc
Confidence            59999999885

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.32  E-value=0.00029  Score=59.70  Aligned_cols=105  Identities=15%  Similarity=0.133  Sum_probs=70.5

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCee---eCCCCCCCchHHHHH---HHhcCC
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDF---INPDDEPNKSISELV---KEMTHG  266 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v---~~~~~~~~~~~~~~~---~~~~~~  266 (332)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+ ++++....   .|..+  .++..+.+   .+..+ 
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g-   79 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ--PAQWKAAVDTAVTAFG-   79 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC--HHHHHHHHHHHHHHHS-
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhCcceEEEeecCC--HHHHHHHHHHHHHHhC-
Confidence            46899999998 9999999999999999 999999999887644 55653322   23332  23333333   33332 


Q ss_pred             CCccEEEEcCCCh-------------------------HHHHHHHHHhcc-CCcEEEEEcCCCC
Q 043260          267 TGVDYGFECTGVA-------------------------SLISEALEATKL-GKGKVMAIGAANE  304 (332)
Q Consensus       267 ~g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~G~~~~  304 (332)
                       +.|++++++|..                         ...+.++..+.. ++|+++.+++..+
T Consensus        80 -~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~  142 (244)
T d1nffa_          80 -GLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEG  142 (244)
T ss_dssp             -CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             -CCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccc
Confidence             589999998853                         112334444432 2389999987664

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00014  Score=60.96  Aligned_cols=99  Identities=20%  Similarity=0.257  Sum_probs=68.6

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCC-----C--eeeCCCCCCCchHHHHH
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGM-----T--DFINPDDEPNKSISELV  260 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga-----~--~v~~~~~~~~~~~~~~~  260 (332)
                      .+++|++||-+|+|. |..++.+++..| ..+|+.++.+++-.+.+++    .+.     +  .+...+.         .
T Consensus        73 ~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~---------~  142 (224)
T d1i1na_          73 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG---------R  142 (224)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG---------G
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec---------c
Confidence            789999999999977 888888888876 3489999999887665532    222     1  1121110         0


Q ss_pred             HHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEE-EcCC
Q 043260          261 KEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMA-IGAA  302 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~-~G~~  302 (332)
                      ........||+|+.+..........++.|+++ |+++. +|..
T Consensus       143 ~~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpG-G~LV~pv~~~  184 (224)
T d1i1na_         143 MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILPVGPA  184 (224)
T ss_dssp             GCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEESCT
T ss_pred             cccchhhhhhhhhhhcchhhcCHHHHhhcCCC-cEEEEEEccC
Confidence            01112236999998877765667889999998 99887 4543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.32  E-value=0.00044  Score=59.06  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=56.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCe-e--eCCCCCCCchHH---HHHHHhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTD-F--INPDDEPNKSIS---ELVKEMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~---~~~~~~~  264 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+    ++.+... .  .|..+  .++..   +.+.+..
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~--~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS--RTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCC--HHHHHHHHHHHHHHh
Confidence            7899999998 9999999999999999 999999999876543    3445443 2  23333  23332   2333444


Q ss_pred             CCCCccEEEEcCCCh
Q 043260          265 HGTGVDYGFECTGVA  279 (332)
Q Consensus       265 ~~~g~d~vid~~g~~  279 (332)
                      ++ ..|++++++|..
T Consensus        82 ~g-~idilinnag~~   95 (258)
T d1ae1a_          82 DG-KLNILVNNAGVV   95 (258)
T ss_dssp             TS-CCCEEEECCCCC
T ss_pred             CC-CcEEEecccccc
Confidence            33 589999988853

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.31  E-value=0.00077  Score=53.32  Aligned_cols=98  Identities=15%  Similarity=0.025  Sum_probs=65.3

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      +++|+|+|+|.+|..+++.+...|. +|++++++.++.+.+.+ ++...+.....   ... ....+..  ...|.++.+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~~~~~---~~~-~~~~~~i--~~~~~~i~~   74 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDV---NDD-AALDAEV--AKHDLVISL   74 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCT---TCH-HHHHHHH--TTSSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhcccccccccccc---cch-hhhHhhh--hccceeEee
Confidence            5789999999999999999999999 99999999999886654 43322222211   111 1122222  147888888


Q ss_pred             CCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          276 TGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       276 ~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +...........++..+ ..++.....
T Consensus        75 ~~~~~~~~~~~~~~~~~-~~~~~~~~~  100 (182)
T d1e5qa1          75 IPYTFHATVIKSAIRQK-KHVVTTSYV  100 (182)
T ss_dssp             SCGGGHHHHHHHHHHHT-CEEECSSCC
T ss_pred             ccchhhhHHHHHHHhhc-cceeecccC
Confidence            87755555555666665 666666543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.0013  Score=51.71  Aligned_cols=113  Identities=20%  Similarity=0.237  Sum_probs=77.8

Q ss_pred             hHHHHHHhhC-CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHH
Q 043260          184 GFGAAWKEFK-VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKE  262 (332)
Q Consensus       184 a~~al~~~~~-~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~  262 (332)
                      .+.++.+..+ +-.|++++|+|-|-+|...++.++.+|+ +|++++.++.+.=.+.--|. .+.        .+.+.+  
T Consensus        10 ~~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~-~v~--------~~~~a~--   77 (163)
T d1li4a1          10 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGY-EVT--------TMDEAC--   77 (163)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC-EEC--------CHHHHT--
T ss_pred             HHHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCce-Eee--------ehhhhh--
Confidence            3444545444 4589999999999999999999999999 99999998865433333343 232        111111  


Q ss_pred             hcCCCCccEEEEcCCChHHH-HHHHHHhccCCcEEEEEcCCCCCcccCChHhHhc
Q 043260          263 MTHGTGVDYGFECTGVASLI-SEALEATKLGKGKVMAIGAANEAKVPLNFPAIAL  316 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~~~~-~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~~  316 (332)
                          ...|+++-++|+...+ .+-++.|+++ ..+..+|...   .+++...+..
T Consensus        78 ----~~adivvtaTGn~~vI~~eh~~~MKdg-aIL~N~Ghfd---~EId~~~L~~  124 (163)
T d1li4a1          78 ----QEGNIFVTTTGCIDIILGRHFEQMKDD-AIVCNIGHFD---VEIDVKWLNE  124 (163)
T ss_dssp             ----TTCSEEEECSSCSCSBCHHHHTTCCTT-EEEEECSSST---TSBCHHHHHH
T ss_pred             ----hhccEEEecCCCccchhHHHHHhccCC-eEEEEecccc---ceecHHHHhh
Confidence                2479999999986555 5888889886 5555556543   6666666543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.27  E-value=0.001  Score=56.44  Aligned_cols=104  Identities=14%  Similarity=0.213  Sum_probs=69.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCC--C-eee--CCCCCCCchH---HHHHHHhcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGM--T-DFI--NPDDEPNKSI---SELVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga--~-~v~--~~~~~~~~~~---~~~~~~~~~  265 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+ ++++.  . ..+  |..+  .++.   .+.+.+..+
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD--EDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCC--HHHHHHHHHHHHHHhC
Confidence            6889999998 9999999999999999 999999999887754 34432  1 222  3332  2332   333333333


Q ss_pred             CCCccEEEEcCCCh-------------------------HHHHHHHHHhccC--CcEEEEEcCCCC
Q 043260          266 GTGVDYGFECTGVA-------------------------SLISEALEATKLG--KGKVMAIGAANE  304 (332)
Q Consensus       266 ~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~--~G~~v~~G~~~~  304 (332)
                        +.|++++++|..                         ...+.++..+.+.  +|+++.+++..+
T Consensus        82 --~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~  145 (251)
T d1zk4a1          82 --PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEG  145 (251)
T ss_dssp             --SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGG
T ss_pred             --CceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccce
Confidence              599999998853                         1234555566543  258888876553

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00035  Score=59.22  Aligned_cols=79  Identities=16%  Similarity=0.212  Sum_probs=59.1

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe--eeCCCCCCCchHHHHHHHhcCCCCccE
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD--FINPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~--v~~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+.+....+  +.+...   .+..+...+..+  +.|+
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~--~id~   77 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK---KKQIDQFANEVE--RLDV   77 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC---HHHHHHHHHHCS--CCSE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeeccc---cccccccccccc--ccee
Confidence            46899999998 9999999999999999 9999999998887665533322  223333   555555555543  5899


Q ss_pred             EEEcCCCh
Q 043260          272 GFECTGVA  279 (332)
Q Consensus       272 vid~~g~~  279 (332)
                      ++++.|..
T Consensus        78 lVn~ag~~   85 (245)
T d2ag5a1          78 LFNVAGFV   85 (245)
T ss_dssp             EEECCCCC
T ss_pred             EEeccccc
Confidence            99998853

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00034  Score=60.20  Aligned_cols=100  Identities=24%  Similarity=0.416  Sum_probs=64.6

Q ss_pred             CCEE-EEECC-ChHHHHHHHHH-HHcCCCeEEEEcCCcchHHHH----HHcCCC-ee--eCCCCCCCchH---HHHHHHh
Q 043260          197 GSSV-AVFGL-GAVGLGVMDRA-RIQGAAKIIGIDKNPCRKDKG----EAFGMT-DF--INPDDEPNKSI---SELVKEM  263 (332)
Q Consensus       197 g~~v-lV~G~-g~vG~~~~~la-~~~G~~~Vi~~~~~~~~~~~~----~~lga~-~v--~~~~~~~~~~~---~~~~~~~  263 (332)
                      |++| ||+|+ +++|+++++.+ +..|. +|+++++++++.+.+    ++.|.. .+  .|..+  .++.   .+.+.+.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~--~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD--LQSIRALRDFLRKE   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCC--HHHHHHHHHHHHHh
Confidence            6777 56688 99999987654 44577 999999999887643    333433 22  23333  2232   3334443


Q ss_pred             cCCCCccEEEEcCCCh-------------------------HHHHHHHHHhccCCcEEEEEcCC
Q 043260          264 THGTGVDYGFECTGVA-------------------------SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      .+  +.|++|+++|..                         ...+.++..|+++ |+++.+++.
T Consensus        79 ~g--~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-g~ivnisS~  139 (275)
T d1wmaa1          79 YG--GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ-GRVVNVSSI  139 (275)
T ss_dssp             HS--SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCH
T ss_pred             cC--CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccccccc
Confidence            33  599999999852                         1234455566787 999998864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00088  Score=53.26  Aligned_cols=79  Identities=14%  Similarity=0.175  Sum_probs=55.1

Q ss_pred             HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcC---CCeeeCCCCCCCchHHHHHHH
Q 043260          187 AAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFG---MTDFINPDDEPNKSISELVKE  262 (332)
Q Consensus       187 al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lg---a~~v~~~~~~~~~~~~~~~~~  262 (332)
                      +|.+..-..+|++|||+|+|+.+.+++..+...|+ +|+++.|+.+|.+.+ +.+.   ....+...     +       
T Consensus         8 ~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~-----~-------   74 (170)
T d1nyta1           8 DLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMD-----E-------   74 (170)
T ss_dssp             HHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECCSG-----G-------
T ss_pred             HHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhcccccccccc-----c-------
Confidence            35343334678999999999999999999999998 899999998887654 3332   22222221     1       


Q ss_pred             hcCCCCccEEEEcCCCh
Q 043260          263 MTHGTGVDYGFECTGVA  279 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~  279 (332)
                      . ....+|+||+|+...
T Consensus        75 ~-~~~~~dliIN~Tp~G   90 (170)
T d1nyta1          75 L-EGHEFDLIINATSSG   90 (170)
T ss_dssp             G-TTCCCSEEEECCSCG
T ss_pred             c-cccccceeecccccC
Confidence            1 123689999998753

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.26  E-value=0.0002  Score=59.99  Aligned_cols=99  Identities=19%  Similarity=0.199  Sum_probs=69.2

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC--C--eeeCCCCCCCchHHHHHHHh
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM--T--DFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga--~--~v~~~~~~~~~~~~~~~~~~  263 (332)
                      +.+..++++|++||-+|+|. |..++.+++. +. +|+.++.+++..+.+++.-.  .  .++..+.  ...       .
T Consensus        62 ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~l-~~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~--~~g-------~  129 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEI-VD-KVVSVEINEKMYNYASKLLSYYNNIKLILGDG--TLG-------Y  129 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG--GGC-------C
T ss_pred             HHHHhhhcccceEEEecCCC-CHHHHHHHHH-hc-ccccccccHHHHHHHHHHHhcccccccccCch--hhc-------c
Confidence            34677999999999999975 7777777775 44 89999999988887766421  1  2222211  000       1


Q ss_pred             cCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEE
Q 043260          264 THGTGVDYGFECTGVASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      .....||.|+-+.+.+......++.|+++ |+++..
T Consensus       130 ~~~~pfD~Iiv~~a~~~ip~~l~~qLk~G-GrLV~p  164 (224)
T d1vbfa_         130 EEEKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILP  164 (224)
T ss_dssp             GGGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             hhhhhHHHHHhhcchhhhhHHHHHhcCCC-CEEEEE
Confidence            11225999998777655667788999998 998874

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.25  E-value=0.001  Score=56.97  Aligned_cols=104  Identities=18%  Similarity=0.227  Sum_probs=69.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHH----HHHHcCCCeeeC-CCCCCCchHHHHHHH---hcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP-CRKD----KGEAFGMTDFIN-PDDEPNKSISELVKE---MTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~-~~~~----~~~~lga~~v~~-~~~~~~~~~~~~~~~---~~~  265 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|++++++. ++.+    .+++.|.+.... .+-.+.+++.+.+.+   ..+
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            5889999998 9999999999999999 999988764 3333    345566553321 121123444444433   332


Q ss_pred             CCCccEEEEcCCCh-------------------------HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          266 GTGVDYGFECTGVA-------------------------SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       266 ~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                        +.|+++++.+..                         ...+.++..|.++ |+++.+++..
T Consensus        96 --~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-g~~i~i~s~~  155 (272)
T d1g0oa_          96 --KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSIT  155 (272)
T ss_dssp             --CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCGG
T ss_pred             --CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc-cccccccccc
Confidence              589999988753                         1345677788887 8888886543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00062  Score=58.33  Aligned_cols=106  Identities=16%  Similarity=0.151  Sum_probs=67.4

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-----cCCCee-eCCCCCCCchHHH----HHHHh
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-----FGMTDF-INPDDEPNKSISE----LVKEM  263 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-----lga~~v-~~~~~~~~~~~~~----~~~~~  263 (332)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+.+     .+.... +..+. ......+    .+.+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~   89 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTM-EDMTFAEQFVAQAGKL   89 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCT-TCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhh-hhHHHHHHHHHHHHHH
Confidence            47899999998 9999999999999999 99999999998875422     233221 11111 1122222    22222


Q ss_pred             cCCCCccEEEEcCCCh-------------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          264 THGTGVDYGFECTGVA-------------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       264 ~~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .+  ..|+++++.|..                         .....++..++.++|+++.+++..+
T Consensus        90 ~g--~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~  153 (269)
T d1xu9a_          90 MG--GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAG  153 (269)
T ss_dssp             HT--SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGG
T ss_pred             hC--CccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchh
Confidence            22  589999887752                         1233444455443389888876654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.23  E-value=0.00094  Score=52.62  Aligned_cols=89  Identities=17%  Similarity=0.273  Sum_probs=60.2

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC-CeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM-TDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga-~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      .+|.|+|+|.+|...+..++..|. +|++.++++++.+.+++.|. +...+..+        .+      ...|+||-++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~~~--------~~------~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLS--------LL------QTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCGG--------GG------TTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeeecc--------cc------cccccccccC
Confidence            368999999999999988899999 99999999999999998884 44432211        11      2578888877


Q ss_pred             CChH---HHHHHHHHhccCCcEEEEEcCC
Q 043260          277 GVAS---LISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       277 g~~~---~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ....   .+++....+.++ ..++..++.
T Consensus        66 p~~~~~~vl~~l~~~l~~~-~iv~~~~s~   93 (165)
T d2f1ka2          66 PIQLILPTLEKLIPHLSPT-AIVTDVASV   93 (165)
T ss_dssp             CHHHHHHHHHHHGGGSCTT-CEEEECCSC
T ss_pred             cHhhhhhhhhhhhhhcccc-cceeecccc
Confidence            6531   233333334443 455555443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.23  E-value=0.0016  Score=55.29  Aligned_cols=97  Identities=23%  Similarity=0.303  Sum_probs=66.6

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC-eeeCCCCCCCchHHHHHHHhcCCC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT-DFINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~-~v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      ..++|++||=+|+|. |.+++.++ ..|. +|+++|.+++..+.+++    .|.. .++..      +..    +.....
T Consensus       117 ~~~~g~~VLDiGcGs-G~l~i~aa-~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~------d~~----~~~~~~  183 (254)
T d2nxca1         117 HLRPGDKVLDLGTGS-GVLAIAAE-KLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEG------SLE----AALPFG  183 (254)
T ss_dssp             HCCTTCEEEEETCTT-SHHHHHHH-HTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEES------CHH----HHGGGC
T ss_pred             hcCccCEEEEcccch-hHHHHHHH-hcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEec------ccc----cccccc
Confidence            368999999999975 66666555 4787 89999999998876653    4543 23322      121    122223


Q ss_pred             CccEEEEcCCCh---HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          268 GVDYGFECTGVA---SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       268 g~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .||+|+.+....   ..+..+.+.|+|+ |++++.|...
T Consensus       184 ~fD~V~ani~~~~l~~l~~~~~~~LkpG-G~lilSgil~  221 (254)
T d2nxca1         184 PFDLLVANLYAELHAALAPRYREALVPG-GRALLTGILK  221 (254)
T ss_dssp             CEEEEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEEEG
T ss_pred             ccchhhhccccccHHHHHHHHHHhcCCC-cEEEEEecch
Confidence            799999865543   2356788899998 9999887654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00045  Score=58.18  Aligned_cols=100  Identities=19%  Similarity=0.242  Sum_probs=71.0

Q ss_pred             HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC---eeeCCCCCCCchHHHH
Q 043260          187 AAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT---DFINPDDEPNKSISEL  259 (332)
Q Consensus       187 al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~  259 (332)
                      .+.+..+++||++||=+|+|. |..+..+++..|+ +|+.+|.+++-.+.+++    .|..   .++..+          
T Consensus        24 ~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d----------   91 (245)
T d1nkva_          24 TLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHND----------   91 (245)
T ss_dssp             HHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC----------
T ss_pred             HHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhhhH----------
Confidence            355778999999999999976 6667778888898 99999999887765544    4543   222211          


Q ss_pred             HHHhcCCCCccEEEEcCC------ChHHHHHHHHHhccCCcEEEEE
Q 043260          260 VKEMTHGTGVDYGFECTG------VASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       260 ~~~~~~~~g~d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      +.++.....||+|+..-.      -...+..+.+.|+|+ |++++.
T Consensus        92 ~~~~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG-G~l~i~  136 (245)
T d1nkva_          92 AAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIG  136 (245)
T ss_dssp             CTTCCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEE
T ss_pred             HhhccccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC-cEEEEE
Confidence            112233447999986422      235778999999998 998875

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.20  E-value=0.00034  Score=60.32  Aligned_cols=77  Identities=21%  Similarity=0.226  Sum_probs=55.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCee---eCCCCCCCchHHHHH---HHhcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTDF---INPDDEPNKSISELV---KEMTHGT  267 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~v---~~~~~~~~~~~~~~~---~~~~~~~  267 (332)
                      +|+++||+|+ +++|.++++.+...|+ +|+++++++++++. .+++|....   .|..+  .++..+.+   .+..+  
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g--   78 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDNVLGIVGDVRS--LEDQKQAASRCVARFG--   78 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHS--
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeeEEeccccc--HHHHHHHHHHHHHHhC--
Confidence            6899999998 9999999999999999 99999999988764 455664322   23332  23333333   33332  


Q ss_pred             CccEEEEcCC
Q 043260          268 GVDYGFECTG  277 (332)
Q Consensus       268 g~d~vid~~g  277 (332)
                      ..|++++++|
T Consensus        79 ~idilvnnAG   88 (276)
T d1bdba_          79 KIDTLIPNAG   88 (276)
T ss_dssp             CCCEEECCCC
T ss_pred             Cccccccccc
Confidence            5899999987

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.20  E-value=0.0013  Score=55.97  Aligned_cols=104  Identities=21%  Similarity=0.285  Sum_probs=67.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc-chHHHH-----HHcCCCeee---CCCCCCCchHHHH---HHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP-CRKDKG-----EAFGMTDFI---NPDDEPNKSISEL---VKE  262 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~-~~~~~~-----~~lga~~v~---~~~~~~~~~~~~~---~~~  262 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++ ++++.+     .+.|.....   |..+  .++..+.   +.+
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~   79 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK--GEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS--HHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHH
Confidence            6889999998 9999999999999999 999999874 344322     233544322   2222  2333333   333


Q ss_pred             hcCCCCccEEEEcCCCh-------------------------HHHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          263 MTHGTGVDYGFECTGVA-------------------------SLISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      ..+  +.|++|+++|..                         ...+.++..+.+. .|+++.+++..+
T Consensus        80 ~~G--~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~  145 (260)
T d1x1ta1          80 QMG--RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHG  145 (260)
T ss_dssp             HHS--CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             HhC--CCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccc
Confidence            333  599999998853                         1234455555542 389999987654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=0.001  Score=56.98  Aligned_cols=104  Identities=23%  Similarity=0.278  Sum_probs=76.3

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHH----cCCC-ee-eCCCCCCCchHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEA----FGMT-DF-INPDDEPNKSISELV  260 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~----lga~-~v-~~~~~~~~~~~~~~~  260 (332)
                      +....+++||++||=+|+|. |.++..+|+..|. .+|+.+|.+++..+.+++    +|.. .+ +...+         +
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d---------~  164 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD---------I  164 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC---------G
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc---------c
Confidence            44678999999999999977 7888888988762 489999999998876644    4542 22 22222         2


Q ss_pred             HHhcCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCC
Q 043260          261 KEMTHGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ....+...+|.|+.-...+ ..+..+.+.|+|+ |+++.+...
T Consensus       165 ~~~~~~~~~D~V~~d~p~p~~~l~~~~~~LKpG-G~lv~~~P~  206 (266)
T d1o54a_         165 SEGFDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCPT  206 (266)
T ss_dssp             GGCCSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEESS
T ss_pred             cccccccceeeeEecCCCHHHHHHHHHhhcCCC-CEEEEEeCc
Confidence            2233444689888877775 4679999999998 999987643

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=0.0015  Score=57.02  Aligned_cols=106  Identities=18%  Similarity=0.177  Sum_probs=67.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcc---------hHH-HH---HHcCCCeeeCCCCC-CCchHHHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPC---------RKD-KG---EAFGMTDFINPDDE-PNKSISELV  260 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~---------~~~-~~---~~lga~~v~~~~~~-~~~~~~~~~  260 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|++++++.+         +.+ ..   ...+.....+..+. ..+.+.+.+
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   84 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA   84 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH
Confidence            5888999998 9999999999999999 9999876532         222 22   22344444444431 112233333


Q ss_pred             HHhcCCCCccEEEEcCCCh-------------------------HHHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          261 KEMTHGTGVDYGFECTGVA-------------------------SLISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      .+..+  +.|++|+++|..                         ...+.++..+++. +|++|.+++..+
T Consensus        85 ~~~~G--~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~  152 (302)
T d1gz6a_          85 LDTFG--RIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASG  152 (302)
T ss_dssp             HHHTS--CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHH
T ss_pred             HHHcC--CCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhh
Confidence            33332  599999998853                         1234555555432 389999987553

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.17  E-value=0.00084  Score=57.14  Aligned_cols=104  Identities=14%  Similarity=0.242  Sum_probs=68.1

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHH----HHHHcCCCee-eCCCCCCCchHHH---HHHHhc
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGID-KNPCRKD----KGEAFGMTDF-INPDDEPNKSISE---LVKEMT  264 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~-~~~~~~~----~~~~lga~~v-~~~~~~~~~~~~~---~~~~~~  264 (332)
                      -.|+++||+|+ +++|.+.++.+...|+ +|+++. ++++..+    .+++.|.+.. +..+-.+.++..+   .+.+..
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence            46899999998 9999999999999999 888764 4444443    3455676533 2222112233333   333333


Q ss_pred             CCCCccEEEEcCCCh-------------------------HHHHHHHHHhccCCcEEEEEcCC
Q 043260          265 HGTGVDYGFECTGVA-------------------------SLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       265 ~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +  +.|++++++|..                         ...+.++..++++ |.++.+.+.
T Consensus        83 g--~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~~iii~s~  142 (259)
T d1ja9a_          83 G--GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSI  142 (259)
T ss_dssp             S--CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred             C--CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC-Ccccccccc
Confidence            3  599999998863                         1356677788887 777777553

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.15  E-value=0.00014  Score=61.42  Aligned_cols=100  Identities=18%  Similarity=0.228  Sum_probs=65.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHH---HHHHhcCCCCccE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISE---LVKEMTHGTGVDY  271 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~---~~~~~~~~~g~d~  271 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+..    ...|..+  .++..+   .+.+..+  +.|+
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~----~~~Dv~~--~~~v~~~~~~~~~~~g--~iDi   76 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLFG----VEVDVTD--SDAVDRAFTAVEEHQG--PVEV   76 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSEE----EECCTTC--HHHHHHHHHHHHHHHS--SCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCceE----EEEecCC--HHHHHHHHHHHHHhcC--CceE
Confidence            6889999998 9999999999999999 99999998776542211    1223332  233333   3333332  5999


Q ss_pred             EEEcCCCh-------------------------HHHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          272 GFECTGVA-------------------------SLISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       272 vid~~g~~-------------------------~~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      +++++|..                         ...+.++..+.+. +|+++.+++...
T Consensus        77 LVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~  135 (237)
T d1uzma1          77 LVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSG  135 (237)
T ss_dssp             EEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC
T ss_pred             EEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhh
Confidence            99998852                         1123344444433 379999987665

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.0013  Score=55.15  Aligned_cols=72  Identities=21%  Similarity=0.182  Sum_probs=52.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++   +++.+...+. |..    +. .+.+.+..+  .+|+++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~---l~~~~~~~~~~Dv~----~~-~~~~~~~~g--~iD~lV   71 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVVCDLR----KD-LDLLFEKVK--EVDILV   71 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEECCTT----TC-HHHHHHHSC--CCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHH---HHhcCCcEEEcchH----HH-HHHHHHHhC--CCcEEE
Confidence            5789999998 9999999999999999 99999988654   4555554433 222    22 334444443  599999


Q ss_pred             EcCCC
Q 043260          274 ECTGV  278 (332)
Q Consensus       274 d~~g~  278 (332)
                      +++|.
T Consensus        72 nnAG~   76 (234)
T d1o5ia_          72 LNAGG   76 (234)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            99885

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00047  Score=58.72  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=55.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee-e--CCCCCCCchHHH---HHHHhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF-I--NPDDEPNKSISE---LVKEMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v-~--~~~~~~~~~~~~---~~~~~~  264 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+    ++.|.... +  |..+  .++..+   .+.+..
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~--~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            6899999998 9999999999999999 999999998876643    44565432 2  3222  233333   233333


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  +.|++++++|.
T Consensus        87 g--~iDilvnnAG~   98 (255)
T d1fmca_          87 G--KVDILVNNAGG   98 (255)
T ss_dssp             S--SCCEEEECCCC
T ss_pred             C--CCCEeeeCCcC
Confidence            3  59999999885

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.13  E-value=0.00071  Score=53.99  Aligned_cols=92  Identities=16%  Similarity=0.161  Sum_probs=60.7

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCC-------CCchHHHHHHHhcCCCCcc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDE-------PNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~-------~~~~~~~~~~~~~~~~g~d  270 (332)
                      +++.|+|+|.+|++.+..+...|. +|+++++++++.+.+++.+..........       ...+..+.+      ..+|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~------~~aD   74 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV------KDAD   74 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH------TTCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh------cCCC
Confidence            689999999999999999999999 99999999999888877653221110000       012222222      2589


Q ss_pred             EEEEcCCChH---HHHHHHHHhccCCcEEE
Q 043260          271 YGFECTGVAS---LISEALEATKLGKGKVM  297 (332)
Q Consensus       271 ~vid~~g~~~---~~~~~~~~l~~~~G~~v  297 (332)
                      +||-++....   .+.+....+.++ -.++
T Consensus        75 ~iii~v~~~~~~~~~~~i~~~l~~~-~~iv  103 (184)
T d1bg6a2          75 VILIVVPAIHHASIAANIASYISEG-QLII  103 (184)
T ss_dssp             EEEECSCGGGHHHHHHHHGGGCCTT-CEEE
T ss_pred             EEEEEEchhHHHHHHHHhhhccCCC-CEEE
Confidence            9999998752   233444455544 4444

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.13  E-value=0.00059  Score=58.48  Aligned_cols=79  Identities=20%  Similarity=0.258  Sum_probs=55.7

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCC---eee--CCCCCCCchHHHHHH---Hhc
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMT---DFI--NPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~---~v~--~~~~~~~~~~~~~~~---~~~  264 (332)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+ ++++..   ..+  |..+  .++..+.+.   +..
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK--DEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            37899999998 9999999999999999 999999999887744 444421   222  3332  333433333   333


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  ..|++++++|.
T Consensus        81 g--~iD~lVnnAG~   92 (268)
T d2bgka1          81 G--KLDIMFGNVGV   92 (268)
T ss_dssp             S--CCCEEEECCCC
T ss_pred             C--Ccceecccccc
Confidence            2  58999998873

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.10  E-value=0.0017  Score=55.15  Aligned_cols=106  Identities=12%  Similarity=0.076  Sum_probs=65.4

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCee----eCCC-CC-CCchHHHHHHHhc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTDF----INPD-DE-PNKSISELVKEMT  264 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~v----~~~~-~~-~~~~~~~~~~~~~  264 (332)
                      +|++|||+|+ +++|.+++..+...|+ +|+++.++.++.+.+.+    .+...+    .+.. +. +..++.+.+.+..
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            5899999998 9999999999999999 88887666665543332    232222    1221 10 1122233444444


Q ss_pred             CCCCccEEEEcCCCh-----------------HHHHHHHHHhccC----CcEEEEEcCCCC
Q 043260          265 HGTGVDYGFECTGVA-----------------SLISEALEATKLG----KGKVMAIGAANE  304 (332)
Q Consensus       265 ~~~g~d~vid~~g~~-----------------~~~~~~~~~l~~~----~G~~v~~G~~~~  304 (332)
                      +  +.|++++++|..                 .....++..+.+.    +|+++.+++..+
T Consensus        83 g--~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~  141 (254)
T d1sbya1          83 K--TVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTG  141 (254)
T ss_dssp             S--CCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGG
T ss_pred             C--CCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhh
Confidence            3  599999999963                 1234444555331    288988876554

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.09  E-value=0.00087  Score=56.85  Aligned_cols=101  Identities=21%  Similarity=0.181  Sum_probs=68.1

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC----CCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG----MTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg----a~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      ++||+|+ +++|++.++.+...|+ +|++++++.++++.+++.+    ...+.+..  +...+.+.+.+..+  +.|++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~--~~~~~~~~~~~~~G--~iDiLV   76 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQ--EPAELIEAVTSAYG--QVDVLV   76 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCC--SHHHHHHHHHHHHS--CCCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccCCHH--HHHHHHHHHHHHcC--CCCEEE
Confidence            6889998 9999999999999999 9999999888877665432    22333332  23445555555544  599999


Q ss_pred             EcCCCh--------------------------HHHHHHHHHhccC-CcEEEEEcCCCC
Q 043260          274 ECTGVA--------------------------SLISEALEATKLG-KGKVMAIGAANE  304 (332)
Q Consensus       274 d~~g~~--------------------------~~~~~~~~~l~~~-~G~~v~~G~~~~  304 (332)
                      ++.|..                          ...+.++..+.+. +|++|.+++...
T Consensus        77 nNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~  134 (252)
T d1zmta1          77 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATP  134 (252)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTT
T ss_pred             ECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccc
Confidence            987631                          1123444445332 389999987765

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.08  E-value=0.00099  Score=56.63  Aligned_cols=77  Identities=19%  Similarity=0.207  Sum_probs=53.9

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee---eCCCCCCCchHHHHHH---HhcC
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF---INPDDEPNKSISELVK---EMTH  265 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~~~---~~~~  265 (332)
                      |+.+||+|+ +++|.+.++.+...|+ +|+++++++++++.+    ++.|....   .|..+  .++..+.+.   +.. 
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~--~~~v~~~~~~~~~~~-   77 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS--VPEIEALVAAVVERY-   77 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT-
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHHHHHHh-
Confidence            567799998 9999999999999999 999999998877643    34554422   23333  233333333   333 


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      + +.|++|+++|.
T Consensus        78 g-~iDilVnnAG~   89 (257)
T d2rhca1          78 G-PVDVLVNNAGR   89 (257)
T ss_dssp             C-SCSEEEECCCC
T ss_pred             C-CCCEEEecccc
Confidence            2 59999999885

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.08  E-value=0.0011  Score=52.99  Aligned_cols=99  Identities=10%  Similarity=0.003  Sum_probs=66.2

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC-CC-----------------eeeCCCCC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG-MT-----------------DFINPDDE  251 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg-a~-----------------~v~~~~~~  251 (332)
                      ....+.+|++||.+|+|. |..+..+|+ .|+ +|+++|.+++-++.+++.- ..                 ..+..+. 
T Consensus        14 ~~l~~~~~~rvLd~GCG~-G~~a~~la~-~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-   89 (201)
T d1pjza_          14 SSLNVVPGARVLVPLCGK-SQDMSWLSG-QGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF-   89 (201)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHH-HCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC-
T ss_pred             HHcCCCCCCEEEEecCcC-CHHHHHHHH-cCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc-
Confidence            455789999999999977 778888886 598 9999999999988887632 11                 0110000 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCC--------hHHHHHHHHHhccCCcEEEEEc
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGV--------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                        .+.....     ...+|+|++...-        ...+..+.+.|+++ |++++..
T Consensus        90 --~~l~~~~-----~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg-G~l~l~~  138 (201)
T d1pjza_          90 --FALTARD-----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLIT  138 (201)
T ss_dssp             --SSSTHHH-----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEEE
T ss_pred             --ccccccc-----ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC-cEEEEEE
Confidence              1110011     1258999985442        23567888999998 9876543

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.08  E-value=0.0003  Score=59.69  Aligned_cols=80  Identities=20%  Similarity=0.281  Sum_probs=55.1

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHHcCCC--eee--CCCCCCCchH---HHHHHHhcCCC
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAA-KIIGIDKNPCRKDKGEAFGMT--DFI--NPDDEPNKSI---SELVKEMTHGT  267 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~-~Vi~~~~~~~~~~~~~~lga~--~v~--~~~~~~~~~~---~~~~~~~~~~~  267 (332)
                      .++|||+|+ +++|+++++.+...|+. +|+.+.++.++++.+++....  .++  |..+  .++.   .+.+.+..+..
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~~~~   80 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTC--DKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTC--HHHHHHHHHHHHHHHGGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCC--HHHHHHHHHHHHHHhCCC
Confidence            378999998 99999999888888852 788899999988877665432  222  3332  2233   33344444444


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      +.|++|+++|.
T Consensus        81 ~idilinnAG~   91 (250)
T d1yo6a1          81 GLSLLINNAGV   91 (250)
T ss_dssp             CCCEEEECCCC
T ss_pred             CeEEEEEcCcc
Confidence            68999999984

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.06  E-value=0.0014  Score=56.79  Aligned_cols=100  Identities=13%  Similarity=0.110  Sum_probs=69.8

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCeeeCCCCCCCchHHHHHHHh
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v~~~~~~~~~~~~~~~~~~  263 (332)
                      +.+.+++++|++||=+|+|- |-.+..+|+..|+ +|+.++.+++..+.+    ++.|....+....   .++     ..
T Consensus        53 ~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~---~d~-----~~  122 (291)
T d1kpia_          53 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI---QGW-----EE  122 (291)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE---CCG-----GG
T ss_pred             HHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhh---hcc-----cc
Confidence            55788999999999999975 4567788888999 999999999876544    4456543222111   111     11


Q ss_pred             cCCCCccEEEEc-----CCC----------hHHHHHHHHHhccCCcEEEEE
Q 043260          264 THGTGVDYGFEC-----TGV----------ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       264 ~~~~g~d~vid~-----~g~----------~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      .++ .||.|+..     ++.          ...+..+.+.|+|+ |++++-
T Consensus       123 ~~~-~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg-G~~~l~  171 (291)
T d1kpia_         123 FDE-PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLH  171 (291)
T ss_dssp             CCC-CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT-CEEEEE
T ss_pred             ccc-ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC-CceEEE
Confidence            223 69998862     332          24678899999998 998853

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.06  E-value=0.00086  Score=56.14  Aligned_cols=101  Identities=24%  Similarity=0.283  Sum_probs=63.7

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCC---CchHHHHHHHhcCCCCccEE
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEP---NKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~---~~~~~~~~~~~~~~~g~d~v  272 (332)
                      +.+|||+|+ +++|.+.++.+...|+ +|+++++++++..     .....+..+...   .....+.+.........|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l   75 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   75 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhcc-----cccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence            357899998 9999999999999999 9999998875421     111111111100   01111222232233368999


Q ss_pred             EEcCCCh--------------------------HHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          273 FECTGVA--------------------------SLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       273 id~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      |+++|..                          ......+..++++ |+++.+++...
T Consensus        76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~Iv~isS~~~  132 (235)
T d1ooea_          76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAAAA  132 (235)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGGG
T ss_pred             EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc-eEEEEeccHHh
Confidence            9998841                          1234556677887 99999987653

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.0017  Score=52.09  Aligned_cols=97  Identities=16%  Similarity=0.154  Sum_probs=61.7

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcC----C-CeeeCCCCCCCchHHHHHHHhcC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFG----M-TDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lg----a-~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      -.+++|+|+|+|+.+.+++..+...|.++++++.++.++.+.+    ++++    . ..+.+..+     .. .+.+.. 
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~-   88 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD-----QQ-AFAEAL-   88 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC-----HH-HHHHHH-
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc-----cc-chhhhh-
Confidence            4678999999999999999999999998999999988766533    2322    1 12233322     11 122221 


Q ss_pred             CCCccEEEEcCCCh------HHHHHHHHHhccCCcEEEEEc
Q 043260          266 GTGVDYGFECTGVA------SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       266 ~~g~d~vid~~g~~------~~~~~~~~~l~~~~G~~v~~G  300 (332)
                       ..+|+||+|++-.      +.+..-+..+.++ ..++.+-
T Consensus        89 -~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~-~~v~Di~  127 (182)
T d1vi2a1          89 -ASADILTNGTKVGMKPLENESLVNDISLLHPG-LLVTECV  127 (182)
T ss_dssp             -HTCSEEEECSSTTSTTSCSCCSCCCGGGSCTT-CEEEECC
T ss_pred             -cccceeccccCCccccccchhhhhHHHhhhcc-hhhHHhh
Confidence             2589999998742      1111123456666 7777774

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.05  E-value=0.0014  Score=55.44  Aligned_cols=85  Identities=19%  Similarity=0.234  Sum_probs=56.7

Q ss_pred             hCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcch----H---HHHHHcCCCeee---CCCCCCCchHHHHH
Q 043260          192 FKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCR----K---DKGEAFGMTDFI---NPDDEPNKSISELV  260 (332)
Q Consensus       192 ~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~----~---~~~~~lga~~v~---~~~~~~~~~~~~~~  260 (332)
                      ..++|+.++||+|+ |++|++.++.+...|+++|+++.+++.+    .   +.+++.|....+   |..+  .++..+.+
T Consensus         4 ~~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d--~~~~~~~~   81 (259)
T d2fr1a1           4 DEWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD--RESVRELL   81 (259)
T ss_dssp             CCCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHH
T ss_pred             cccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccch--HHHHHHhh
Confidence            35789999999998 9999999999999998678888776422    1   223456654322   3333  33443334


Q ss_pred             HHhcCCCCccEEEEcCCC
Q 043260          261 KEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g~  278 (332)
                      .+.......|.|+.+.|.
T Consensus        82 ~~i~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          82 GGIGDDVPLSAVFHAAAT   99 (259)
T ss_dssp             HTSCTTSCEEEEEECCCC
T ss_pred             cccccccccccccccccc
Confidence            444344468999998885

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.03  E-value=0.0033  Score=46.17  Aligned_cols=93  Identities=11%  Similarity=0.024  Sum_probs=63.2

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchH--HHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRK--DKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~--~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      .|++|||+|+|.+|..-++.+...|+ +|++++......  +++++ +.-..+...- ...+       +   .++++|+
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~-~~i~~~~~~~-~~~d-------l---~~~~lv~   77 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANE-GMLTLVEGPF-DETL-------L---DSCWLAI   77 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTT-TSCEEEESSC-CGGG-------G---TTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhc-CCceeeccCC-CHHH-------h---CCCcEEe
Confidence            57899999999999999999999999 888887654332  22322 2222221111 0111       1   2689999


Q ss_pred             EcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          274 ECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       274 d~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      -++++...-.+..+..++. |.++-+-..
T Consensus        78 ~at~d~~~n~~i~~~a~~~-~ilVNv~D~  105 (113)
T d1pjqa1          78 AATDDDTVNQRVSDAAESR-RIFCNVVDA  105 (113)
T ss_dssp             ECCSCHHHHHHHHHHHHHT-TCEEEETTC
T ss_pred             ecCCCHHHHHHHHHHHHHc-CCEEEeCCC
Confidence            9999965556777888887 888876543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.02  E-value=0.004  Score=48.69  Aligned_cols=89  Identities=18%  Similarity=0.231  Sum_probs=62.7

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~  278 (332)
                      +|.|+|.|.+|...+.-+...|. +|++.++++++.+.+++.++...        .+..+.++      ..|+||-|+.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~~--------~~~~e~~~------~~d~ii~~v~~   66 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAETA--------STAKAIAE------QCDVIITMLPN   66 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC--------SSHHHHHH------HCSEEEECCSS
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhhhc--------ccHHHHHh------CCCeEEEEcCC
Confidence            68899999999999988888999 99999999999998888776322        22222222      36888888877


Q ss_pred             hHHHHHH-------HHHhccCCcEEEEEcCCC
Q 043260          279 ASLISEA-------LEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       279 ~~~~~~~-------~~~l~~~~G~~v~~G~~~  303 (332)
                      +......       ...+.++ ..++..+...
T Consensus        67 ~~~v~~v~~~~~~~~~~~~~g-~iiid~sT~~   97 (161)
T d1vpda2          67 SPHVKEVALGENGIIEGAKPG-TVLIDMSSIA   97 (161)
T ss_dssp             HHHHHHHHHSTTCHHHHCCTT-CEEEECSCCC
T ss_pred             HHHHHHHHhCCcchhhccCCC-CEEEECCCCC
Confidence            6555443       3344554 5566665543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.96  E-value=0.0035  Score=47.29  Aligned_cols=75  Identities=21%  Similarity=0.232  Sum_probs=54.9

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH-cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA-FGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      .+|+|+|.|.+|...++.+...|. +|++++.++++.+.+.+ ++.. ++..+.   .+ .+.+.+. +-..+|.++-++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~-vi~Gd~---~~-~~~l~~~-~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL-VINGDC---TK-IKTLEDA-GIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE-EEESCT---TS-HHHHHHT-TTTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhh-hccCcc---cc-hhhhhhc-ChhhhhhhcccC
Confidence            368999999999999999999998 99999999999887654 5543 443322   11 1223332 334689999999


Q ss_pred             CCh
Q 043260          277 GVA  279 (332)
Q Consensus       277 g~~  279 (332)
                      .+.
T Consensus        74 ~~d   76 (132)
T d1lssa_          74 GKE   76 (132)
T ss_dssp             SCH
T ss_pred             CcH
Confidence            885

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.96  E-value=0.0011  Score=56.37  Aligned_cols=104  Identities=16%  Similarity=0.213  Sum_probs=67.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcC-CCee----eCCCCCCCchHHHH---HHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFG-MTDF----INPDDEPNKSISEL---VKE  262 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lg-a~~v----~~~~~~~~~~~~~~---~~~  262 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+.    +.+ ...+    .|..+  .++..+.   +.+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~~   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD--EAQVEAYVTATTE   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCC--HHHHHHHHHHHHH
Confidence            5789999998 9999999999999999 9999999998876432    222 1122    23333  2333333   333


Q ss_pred             hcCCCCccEEEEcCCCh--------------------------HHHHHHHHHhc-cCCcEEEEEcCCCC
Q 043260          263 MTHGTGVDYGFECTGVA--------------------------SLISEALEATK-LGKGKVMAIGAANE  304 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~--------------------------~~~~~~~~~l~-~~~G~~v~~G~~~~  304 (332)
                      ..+  +.|++|+++|..                          ...+.++..+. .+.|+++.+++...
T Consensus        80 ~~G--~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~  146 (258)
T d1iy8a_          80 RFG--RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGG  146 (258)
T ss_dssp             HHS--CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGG
T ss_pred             HhC--CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhh
Confidence            333  589999998731                          12234444443 22389999987654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.95  E-value=0.00097  Score=56.79  Aligned_cols=78  Identities=17%  Similarity=0.278  Sum_probs=54.5

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHH-----HHHcCCCee---eCCCCCCCchHHHHHH---Hh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDK-----GEAFGMTDF---INPDDEPNKSISELVK---EM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~-----~~~lga~~v---~~~~~~~~~~~~~~~~---~~  263 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.     .++.|.+..   .|..+  .++..+.+.   +.
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN--TDIVTKTIQQIDAD   84 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHH
Confidence            5789999998 9999999999999999 99999999877643     234564422   23332  233333333   33


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      . + +.|+++++.|.
T Consensus        85 ~-g-~iDilVnnAg~   97 (260)
T d1h5qa_          85 L-G-PISGLIANAGV   97 (260)
T ss_dssp             S-C-SEEEEEECCCC
T ss_pred             h-C-CCcEecccccc
Confidence            3 2 69999999874

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0016  Score=56.56  Aligned_cols=80  Identities=14%  Similarity=0.217  Sum_probs=55.2

Q ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHc--------CCCee---eCCCCCCCchHHHHH
Q 043260          194 VEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAF--------GMTDF---INPDDEPNKSISELV  260 (332)
Q Consensus       194 ~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~l--------ga~~v---~~~~~~~~~~~~~~~  260 (332)
                      .-+|+++||+|+ +++|.++++.+...|+ +|++++++.++++.+ +++        +...+   .|..+  .++..+.+
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~   85 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN--EEEVNNLV   85 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC--HHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC--HHHHHHHH
Confidence            457899999998 9999999999999999 999999998887543 222        22221   23332  23333333


Q ss_pred             H---HhcCCCCccEEEEcCCC
Q 043260          261 K---EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       261 ~---~~~~~~g~d~vid~~g~  278 (332)
                      .   +..+  +.|++|+++|.
T Consensus        86 ~~~~~~~G--~iDiLVnnAg~  104 (297)
T d1yxma1          86 KSTLDTFG--KINFLVNNGGG  104 (297)
T ss_dssp             HHHHHHHS--CCCEEEECCCC
T ss_pred             HHHHHHhC--CeEEEEeeccc
Confidence            3   3333  58999999885

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.92  E-value=0.00057  Score=59.23  Aligned_cols=97  Identities=13%  Similarity=0.136  Sum_probs=69.3

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC-ee-eCCCCCCCchHHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT-DF-INPDDEPNKSISELVK  261 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~-~v-~~~~~~~~~~~~~~~~  261 (332)
                      +.+..++++|++||=+|+|- |..++.+++..|+ +|++++.+++..+.+++    .|.. .+ +...+     +    +
T Consensus        54 ~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d-----~----~  122 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG-----W----E  122 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESC-----G----G
T ss_pred             HHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhh-----h----h
Confidence            55778999999999999976 7778889999998 99999999998876644    3422 11 11111     1    1


Q ss_pred             HhcCCCCccEEEE-----cCCC---hHHHHHHHHHhccCCcEEEE
Q 043260          262 EMTHGTGVDYGFE-----CTGV---ASLISEALEATKLGKGKVMA  298 (332)
Q Consensus       262 ~~~~~~g~d~vid-----~~g~---~~~~~~~~~~l~~~~G~~v~  298 (332)
                      ++ ++ .||.|+.     .++.   ...+..+.+.|+|+ |++++
T Consensus       123 ~~-~~-~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg-G~~~l  164 (285)
T d1kpga_         123 QF-DE-PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLL  164 (285)
T ss_dssp             GC-CC-CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEE
T ss_pred             cc-cc-cccceeeehhhhhcCchhHHHHHHHHHhhcCCC-CcEEE
Confidence            22 23 6898876     3332   24578899999998 99875

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.92  E-value=0.0015  Score=56.50  Aligned_cols=80  Identities=14%  Similarity=0.095  Sum_probs=54.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----HHcCCCe-ee--CCCCCCCchHHHHHHHh-cC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-----EAFGMTD-FI--NPDDEPNKSISELVKEM-TH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-----~~lga~~-v~--~~~~~~~~~~~~~~~~~-~~  265 (332)
                      +|+++||+|+ +++|.++++.+...|+ +|++++++.++++.+     .+.|... .+  |..+  .++..+.+... ..
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~--~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD--PDMVQNTVSELIKV  100 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccC--hHHHHHHhhhhhhh
Confidence            5799999998 9999999999999999 999999998876532     3345442 22  2222  23332222221 11


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                      ..+.|+++++.|.
T Consensus       101 ~g~iDilvnnAg~  113 (294)
T d1w6ua_         101 AGHPNIVINNAAG  113 (294)
T ss_dssp             TCSCSEEEECCCC
T ss_pred             ccccchhhhhhhh
Confidence            2269999999885

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.91  E-value=0.002  Score=48.73  Aligned_cols=74  Identities=18%  Similarity=0.325  Sum_probs=55.1

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeee-CCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      ++++|+|.|.+|..+++.+...|. +|++++.++++.+.+++.|...++ +..+   .+.   +.+. +-..+|.||-++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~gd~~~---~~~---l~~a-~i~~a~~vi~~~   72 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIANATE---ENE---LLSL-GIRNFEYVIVAI   72 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEECCTTC---TTH---HHHH-TGGGCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCcceeeeccc---chh---hhcc-CCccccEEEEEc
Confidence            357899999999999999999999 999999999999988888765444 2222   222   2222 223589999888


Q ss_pred             CCh
Q 043260          277 GVA  279 (332)
Q Consensus       277 g~~  279 (332)
                      ++.
T Consensus        73 ~~~   75 (134)
T d2hmva1          73 GAN   75 (134)
T ss_dssp             CSC
T ss_pred             Cch
Confidence            764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.90  E-value=0.0044  Score=48.73  Aligned_cols=92  Identities=20%  Similarity=0.248  Sum_probs=65.8

Q ss_pred             EEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHcCC-CeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAFGM-TDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~lga-~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      +|+|+|+|.+|...+..++..|. .+|+++|++++.++.+++.|. +......+           +.. ....|+||-|+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~-----------~~~-~~~~dlIila~   70 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA-----------KVE-DFSPDFVMLSS   70 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGG-----------GGG-GTCCSEEEECS
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhh-----------hhh-ccccccccccC
Confidence            69999999999999999998884 479999999999999999885 44443321           011 12578888888


Q ss_pred             CChH---HHHHHHHHhccCCcEEEEEcCCC
Q 043260          277 GVAS---LISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       277 g~~~---~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ....   .+.+....+.++ ..++.++...
T Consensus        71 p~~~~~~vl~~l~~~~~~~-~ii~d~~s~k   99 (171)
T d2g5ca2          71 PVRTFREIAKKLSYILSED-ATVTDQGSVK   99 (171)
T ss_dssp             CHHHHHHHHHHHHHHSCTT-CEEEECCSCC
T ss_pred             Cchhhhhhhhhhhcccccc-cccccccccc
Confidence            7542   344555566665 6777777654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.89  E-value=0.0027  Score=54.11  Aligned_cols=105  Identities=16%  Similarity=0.190  Sum_probs=74.6

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHH----c-C--CCee-eCCCCCCCchHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEA----F-G--MTDF-INPDDEPNKSISE  258 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~----l-g--a~~v-~~~~~~~~~~~~~  258 (332)
                      +....+++||++||=.|+|. |.++..+|+..|. .+|+.++.+++..+.+++    + +  .+.+ +...+        
T Consensus        88 Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d--------  158 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD--------  158 (264)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC--------
T ss_pred             HHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc--------
Confidence            44678999999999999977 8888899998873 489999999998887754    2 1  2222 11111        


Q ss_pred             HHHH-hcCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          259 LVKE-MTHGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       259 ~~~~-~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                       +.+ ..+...||.||--...+ ..+..+.+.|+++ |+++.+-..-
T Consensus       159 -~~~~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpG-G~lv~~~P~i  203 (264)
T d1i9ga_         159 -LADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVATV  203 (264)
T ss_dssp             -GGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEESSH
T ss_pred             -cccccccCCCcceEEEecCCHHHHHHHHHhccCCC-CEEEEEeCcc
Confidence             111 12234799887766654 4678999999998 9998876443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.89  E-value=0.0011  Score=56.86  Aligned_cols=78  Identities=12%  Similarity=0.115  Sum_probs=54.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCC--Cee----eCCCCCCCchHHH---HHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGM--TDF----INPDDEPNKSISE---LVK  261 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga--~~v----~~~~~~~~~~~~~---~~~  261 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+    ++.+.  ..+    .|..+  .++..+   .+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~~~   80 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT--EDGQDQIINSTL   80 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC--HHHHHHHHHHHH
Confidence            5788999998 9999999999999999 999999999887644    23332  112    23333  233333   333


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +..+  +.|++++++|.
T Consensus        81 ~~~g--~iDilvnnAG~   95 (272)
T d1xkqa_          81 KQFG--KIDVLVNNAGA   95 (272)
T ss_dssp             HHHS--CCCEEEECCCC
T ss_pred             HHhC--CceEEEeCCcc
Confidence            3332  58999999774

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.88  E-value=0.0012  Score=54.99  Aligned_cols=94  Identities=13%  Similarity=0.153  Sum_probs=69.5

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      ...++.+||=+|+|. |..+..+++ .|. +|+++|.+++.++.+++.+.+..+..+.   .++     .. ....||+|
T Consensus        39 ~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~---~~l-----~~-~~~~fD~i  106 (246)
T d2avna1          39 YLKNPCRVLDLGGGT-GKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKA---EDL-----PF-PSGAFEAV  106 (246)
T ss_dssp             HCCSCCEEEEETCTT-CHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCT---TSC-----CS-CTTCEEEE
T ss_pred             hcCCCCEEEEECCCC-chhcccccc-cce-EEEEeecccccccccccccccccccccc---ccc-----cc-ccccccce
Confidence            356788999999985 888888876 587 9999999999999999887766654433   221     11 22379999


Q ss_pred             EEcCCC-------hHHHHHHHHHhccCCcEEEEE
Q 043260          273 FECTGV-------ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       273 id~~g~-------~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      +.....       ...+..+.+.|+++ |.+++.
T Consensus       107 i~~~~~~~~~~d~~~~l~~i~r~Lk~g-G~~ii~  139 (246)
T d2avna1         107 LALGDVLSYVENKDKAFSEIRRVLVPD-GLLIAT  139 (246)
T ss_dssp             EECSSHHHHCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             eeecchhhhhhhHHHHHHHHHhhcCcC-cEEEEE
Confidence            975432       23577888999998 988764

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.86  E-value=0.0012  Score=56.20  Aligned_cols=78  Identities=15%  Similarity=0.181  Sum_probs=53.0

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcc-hHH----HHHHcCCCeee---CCCCCCCchHHHHHH---Hh
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPC-RKD----KGEAFGMTDFI---NPDDEPNKSISELVK---EM  263 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~-~~~----~~~~lga~~v~---~~~~~~~~~~~~~~~---~~  263 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|++++++.+ +.+    .+++.|.+...   |..+  .++..+.+.   +.
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~   82 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV--ESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            6889999988 9999999999999999 9999998754 333    33455654222   3332  233333232   33


Q ss_pred             cCCCCccEEEEcCCC
Q 043260          264 THGTGVDYGFECTGV  278 (332)
Q Consensus       264 ~~~~g~d~vid~~g~  278 (332)
                      .+  +.|++++++|.
T Consensus        83 ~G--~iDiLVnnAG~   95 (261)
T d1geea_          83 FG--KLDVMINNAGL   95 (261)
T ss_dssp             HS--CCCEEEECCCC
T ss_pred             hC--CCCEeecccee
Confidence            32  58999999885

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.86  E-value=0.0011  Score=56.84  Aligned_cols=78  Identities=15%  Similarity=0.193  Sum_probs=54.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCC--ee----eCCCCCCCchHHHH---HH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMT--DF----INPDDEPNKSISEL---VK  261 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~--~v----~~~~~~~~~~~~~~---~~  261 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+    ++.|..  .+    .|..+  .++..+.   +.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   79 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE--ASGQDDIINTTL   79 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCC--HHHHHHHHHHHH
Confidence            5889999998 9999999999999999 999999998887643    334432  22    23333  2333333   33


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +..+  +.|++++++|.
T Consensus        80 ~~~G--~iDilVnnAG~   94 (274)
T d1xhla_          80 AKFG--KIDILVNNAGA   94 (274)
T ss_dssp             HHHS--CCCEEEECCCC
T ss_pred             HHcC--CceEEEeeccc
Confidence            3332  58999999874

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.84  E-value=0.0007  Score=58.51  Aligned_cols=101  Identities=11%  Similarity=0.134  Sum_probs=68.6

Q ss_pred             HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHH
Q 043260          187 AAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKE  262 (332)
Q Consensus       187 al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~  262 (332)
                      -+.+..++++|++||=+|+|- |..+..+++..|+ +|++++.+++..+.+++    .|....+....   .+    .++
T Consensus        43 ~~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~---~d----~~~  113 (280)
T d2fk8a1          43 LNLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL---QG----WED  113 (280)
T ss_dssp             HHHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SC----GGG
T ss_pred             HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhh---hh----hhh
Confidence            355777899999999999975 4456778888898 99999999998876654    34322111111   11    111


Q ss_pred             hcCCCCccEEEE-----cCCC---hHHHHHHHHHhccCCcEEEEE
Q 043260          263 MTHGTGVDYGFE-----CTGV---ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       263 ~~~~~g~d~vid-----~~g~---~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      . ++ .||.|+.     .++.   ...+..+.+.|+|+ |++++-
T Consensus       114 ~-~~-~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg-G~~~i~  155 (280)
T d2fk8a1         114 F-AE-PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQ  155 (280)
T ss_dssp             C-CC-CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEE
T ss_pred             h-cc-chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC-ceEEEE
Confidence            2 23 6898875     3332   24578899999998 998763

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.84  E-value=0.0021  Score=54.47  Aligned_cols=75  Identities=20%  Similarity=0.224  Sum_probs=51.9

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee---eCCCCCCCchHHHHHH---HhcCCC
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF---INPDDEPNKSISELVK---EMTHGT  267 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~~~---~~~~~~  267 (332)
                      .+||+|+ +++|.+.++.+...|+ +|+++++++++++.+    ++.|.+..   .|..+  .++..+.+.   +.. + 
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~-g-   77 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD--RDQVFAAVEQARKTL-G-   77 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHT-T-
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHHh-C-
Confidence            4588898 9999999999999999 999999999887643    44564422   23332  333333333   333 2 


Q ss_pred             CccEEEEcCCC
Q 043260          268 GVDYGFECTGV  278 (332)
Q Consensus       268 g~d~vid~~g~  278 (332)
                      +.|++++++|.
T Consensus        78 ~iDilVnnAG~   88 (255)
T d1gega_          78 GFDVIVNNAGV   88 (255)
T ss_dssp             CCCEEEECCCC
T ss_pred             CccEEEecccc
Confidence            59999999885

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.82  E-value=0.00098  Score=56.90  Aligned_cols=78  Identities=14%  Similarity=0.162  Sum_probs=53.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCC--ee----eCCCCCCCchHHHHHH---
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMT--DF----INPDDEPNKSISELVK---  261 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~--~v----~~~~~~~~~~~~~~~~---  261 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+    ++.|..  .+    .|..+  .++..+.+.   
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~   80 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT--DAGQDEILSTTL   80 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCC--HHHHHHHHHHHH
Confidence            6788999998 9999999999999999 999999999887643    233321  12    23333  233333232   


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                      +..+  +.|++++++|.
T Consensus        81 ~~~g--~iDilvnnAG~   95 (264)
T d1spxa_          81 GKFG--KLDILVNNAGA   95 (264)
T ss_dssp             HHHS--CCCEEEECCC-
T ss_pred             HHhC--CCCEeeccccc
Confidence            3332  58999999874

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.76  E-value=0.00073  Score=56.35  Aligned_cols=99  Identities=16%  Similarity=0.274  Sum_probs=62.9

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHH---HcCC---CeEEEEcCCcchHHHHHH---------cCCCe--eeCCCCCCCch
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRAR---IQGA---AKIIGIDKNPCRKDKGEA---------FGMTD--FINPDDEPNKS  255 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~---~~G~---~~Vi~~~~~~~~~~~~~~---------lga~~--v~~~~~~~~~~  255 (332)
                      .+++|++||.+|+|. |..++.+++   ..|.   .+|+.++.+++-.+.+++         .+...  ++..+.     
T Consensus        77 ~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~-----  150 (223)
T d1r18a_          77 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG-----  150 (223)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG-----
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccc-----
Confidence            789999999999854 555555554   4442   379999998876655432         12222  221111     


Q ss_pred             HHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEE-EcCC
Q 043260          256 ISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMA-IGAA  302 (332)
Q Consensus       256 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~-~G~~  302 (332)
                          .........||.|+-+.+-+......++.|+++ |+++. +|..
T Consensus       151 ----~~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~g-G~lV~pvg~~  193 (223)
T d1r18a_         151 ----RKGYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVPVGPD  193 (223)
T ss_dssp             ----GGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEEESCS
T ss_pred             ----ccccccccceeeEEEEeechhchHHHHHhcCCC-cEEEEEEecC
Confidence                001111236999998887765667889999998 99976 5643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.74  E-value=0.0021  Score=54.32  Aligned_cols=80  Identities=20%  Similarity=0.323  Sum_probs=53.3

Q ss_pred             CCCEEEEECC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCCeeeCCCCCCCchHHH---HHHHhcC
Q 043260          196 KGSSVAVFGL-G--AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMTDFINPDDEPNKSISE---LVKEMTH  265 (332)
Q Consensus       196 ~g~~vlV~G~-g--~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~~v~~~~~~~~~~~~~---~~~~~~~  265 (332)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|++++++++..+.++    +.+....+..+-.+.++..+   .+.+..+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcC
Confidence            6899999998 5  799999999999999 8999998876655433    33433443222212333333   3333333


Q ss_pred             CCCccEEEEcCCC
Q 043260          266 GTGVDYGFECTGV  278 (332)
Q Consensus       266 ~~g~d~vid~~g~  278 (332)
                        +.|+++++.+.
T Consensus        86 --~iDilVnnag~   96 (256)
T d1ulua_          86 --GLDYLVHAIAF   96 (256)
T ss_dssp             --SEEEEEECCCC
T ss_pred             --CceEEEecccc
Confidence              59999998874

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.71  E-value=0.0047  Score=51.87  Aligned_cols=101  Identities=16%  Similarity=0.231  Sum_probs=63.4

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEc-CCcchHHHH----HHcCCCe-ee--CCCCCCCchHHHHH---HHhcCC
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGID-KNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISELV---KEMTHG  266 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~-~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~~---~~~~~~  266 (332)
                      .+||+|+ +++|++.++.+...|+ +|++++ +++++.+.+    ++.|.+. .+  |..+  .++..+.+   .+.. +
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~-g   78 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK--EADVEAMMKTAIDAW-G   78 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS--HHHHHHHHHHHHHHS-S
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHHHHHHc-C
Confidence            5677888 9999999999999999 888865 455554433    4456432 22  3332  23333333   3333 2


Q ss_pred             CCccEEEEcCCCh-------------------------HHHHHHHHHhcc-CCcEEEEEcCCCC
Q 043260          267 TGVDYGFECTGVA-------------------------SLISEALEATKL-GKGKVMAIGAANE  304 (332)
Q Consensus       267 ~g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~G~~~~  304 (332)
                       +.|++++++|..                         ...+.++..+.+ ++|+++.+++..+
T Consensus        79 -~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~  141 (244)
T d1edoa_          79 -TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVG  141 (244)
T ss_dssp             -CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHH
T ss_pred             -CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhh
Confidence             599999998853                         123455555532 2399999987654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.71  E-value=0.0044  Score=51.94  Aligned_cols=102  Identities=14%  Similarity=0.128  Sum_probs=65.4

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCC------eEEEEcCCcchHHHH----HHcCCCe-ee--CCCCCCCchHHH---HHH
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAA------KIIGIDKNPCRKDKG----EAFGMTD-FI--NPDDEPNKSISE---LVK  261 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~------~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~---~~~  261 (332)
                      .|||+|+ +++|.+.++.+...|++      .|+.+++++++++.+    ++.|... .+  |..+  .++..+   .+.
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~   80 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD--MADVRRLTTHIV   80 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHH
Confidence            4688898 99999999999989983      288999998887643    3345432 12  3333  233333   333


Q ss_pred             HhcCCCCccEEEEcCCCh-------------------------HHHHHHHHHhcc-CCcEEEEEcCCCC
Q 043260          262 EMTHGTGVDYGFECTGVA-------------------------SLISEALEATKL-GKGKVMAIGAANE  304 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~G~~~~  304 (332)
                      +..+  +.|+++++.|..                         ...+.++..+++ ++|+++.+++..+
T Consensus        81 ~~~g--~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~  147 (240)
T d2bd0a1          81 ERYG--HIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAA  147 (240)
T ss_dssp             HHTS--CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             HHcC--CcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhh
Confidence            3332  589999998852                         123455555543 2389999987654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.68  E-value=0.002  Score=53.54  Aligned_cols=99  Identities=16%  Similarity=0.175  Sum_probs=68.2

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCCe--eeCCCCCCCchHHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMTD--FINPDDEPNKSISELVK  261 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~~--v~~~~~~~~~~~~~~~~  261 (332)
                      +.+.+++++|++||=+|+|. |..+..+++ .+. +|+++|.++.-++.++    +.|.+.  ++..+.   .++     
T Consensus         8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~-~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~---~~~-----   76 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGA-GHTALAFSP-YVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA---ESL-----   76 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT---TBC-----
T ss_pred             HHHHhCCCCCCEEEEeCCcC-cHHHHHHHH-hCC-eEEEEeCChhhhhhhhhhhccccccccccccccc---ccc-----
Confidence            55788999999999999977 777778877 465 9999999987766553    334332  222111   111     


Q ss_pred             HhcCCCCccEEEEcCCC------hHHHHHHHHHhccCCcEEEEE
Q 043260          262 EMTHGTGVDYGFECTGV------ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      .. ....||+|+.+-.-      ...+..+.+.|+|+ |++++.
T Consensus        77 ~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~~~~~  118 (234)
T d1xxla_          77 PF-PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD-GRFLLV  118 (234)
T ss_dssp             CS-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             cc-cccccceeeeeceeecccCHHHHHHHHHHeeCCC-cEEEEE
Confidence            01 22369999975432      24678999999998 988875

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.68  E-value=0.0081  Score=46.88  Aligned_cols=110  Identities=21%  Similarity=0.300  Sum_probs=76.8

Q ss_pred             HHHHHhhC-CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhc
Q 043260          186 GAAWKEFK-VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       186 ~al~~~~~-~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      .++.+..+ +-.|++++|.|=|-+|...++-++.+|+ +|++++.++-+.=.+.--|. ++..        .    .+..
T Consensus        11 d~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA~mdGf-~v~~--------~----~~a~   76 (163)
T d1v8ba1          11 DGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGF-NVVT--------L----DEIV   76 (163)
T ss_dssp             HHHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTC-EECC--------H----HHHT
T ss_pred             HHHHHHhCceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHHHhcCC-ccCc--------h----hHcc
Confidence            34444444 4689999999999999999999999999 99999999855322222233 3321        1    1221


Q ss_pred             CCCCccEEEEcCCChHHH-HHHHHHhccCCcEEEEEcCCCCCcccCChHhHh
Q 043260          265 HGTGVDYGFECTGVASLI-SEALEATKLGKGKVMAIGAANEAKVPLNFPAIA  315 (332)
Q Consensus       265 ~~~g~d~vid~~g~~~~~-~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~  315 (332)
                        ...|+++-++|+.+.+ .+-++.++.+ ..+...|--.   .+++...+.
T Consensus        77 --~~aDi~vTaTGn~~vI~~~h~~~MKdg-aIl~N~GHfd---~EIdv~~L~  122 (163)
T d1v8ba1          77 --DKGDFFITCTGNVDVIKLEHLLKMKNN-AVVGNIGHFD---DEIQVNELF  122 (163)
T ss_dssp             --TTCSEEEECCSSSSSBCHHHHTTCCTT-CEEEECSSTT---TSBCHHHHH
T ss_pred             --ccCcEEEEcCCCCccccHHHHHHhhCC-eEEEeccccc---hhhhhHHHH
Confidence              2479999999997654 5778899987 6666666543   666766554

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.63  E-value=0.0039  Score=53.30  Aligned_cols=102  Identities=14%  Similarity=0.099  Sum_probs=70.2

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC---eeeCCCCCCCchHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT---DFINPDDEPNKSISELV  260 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~~  260 (332)
                      +.+...+.+|++||=+|+|. |..+..+++..|+ +|++++.++...+.+++    .|..   .++..+.   .++    
T Consensus        59 l~~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~---~~l----  129 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEI----  129 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSC----
T ss_pred             HHHhcCCCCCCEEEEeCCCC-cHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccccc---ccc----
Confidence            44556889999999999975 6777788888898 99999999987765544    3432   2232221   111    


Q ss_pred             HHhcCCCCccEEEEcCC-----C-hHHHHHHHHHhccCCcEEEEEcC
Q 043260          261 KEMTHGTGVDYGFECTG-----V-ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       261 ~~~~~~~g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                       .. ....||+|+..-.     + ...+..+.+.|+|+ |++++...
T Consensus       130 -~~-~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg-G~l~~~~~  173 (282)
T d2o57a1         130 -PC-EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP  173 (282)
T ss_dssp             -SS-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             -cc-cccccchhhccchhhhccCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence             01 2236999987432     2 24678999999998 99887643

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.59  E-value=0.0079  Score=48.07  Aligned_cols=101  Identities=16%  Similarity=0.207  Sum_probs=68.0

Q ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCC-Ce--eeCCCCCCCchHHHHHH
Q 043260          189 WKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGM-TD--FINPDDEPNKSISELVK  261 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga-~~--v~~~~~~~~~~~~~~~~  261 (332)
                      ....++++|++||=+|+|. |..++.+++. +. +|+.+|.+++.++.+++    .|. +.  ++..      +..+.  
T Consensus        26 l~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~g------da~~~--   94 (186)
T d1l3ia_          26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG------DAPEA--   94 (186)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES------CHHHH--
T ss_pred             HHhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEEC------chhhc--
Confidence            3557899999999999855 5555566653 44 99999999988776644    564 22  2322      22222  


Q ss_pred             HhcCCCCccEEEEcCCC---hHHHHHHHHHhccCCcEEEEEcCC
Q 043260          262 EMTHGTGVDYGFECTGV---ASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                       ......||.|+.....   ...+..+.+.|+++ |+++.....
T Consensus        95 -~~~~~~~D~v~~~~~~~~~~~~~~~~~~~Lkpg-G~lvi~~~~  136 (186)
T d1l3ia_          95 -LCKIPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTAIL  136 (186)
T ss_dssp             -HTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEECB
T ss_pred             -ccccCCcCEEEEeCccccchHHHHHHHHHhCcC-CEEEEEeec
Confidence             2333479999976543   34678888999998 998876543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.56  E-value=0.0065  Score=50.57  Aligned_cols=97  Identities=22%  Similarity=0.286  Sum_probs=67.3

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC-eeeCCCCCCCchHHHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT-DFINPDDEPNKSISELVKE  262 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~-~v~~~~~~~~~~~~~~~~~  262 (332)
                      +.+.....+.++||=+|+|. |..+..+++ .|. +|+++|.+++-++.+++    .+.. .++..+          +.+
T Consensus        33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d----------~~~   99 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGD----------VLE   99 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESC----------GGG
T ss_pred             HHHHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchheehh----------hhh
Confidence            34455667788999999987 777777776 688 99999999987776654    3432 233222          222


Q ss_pred             hcCCCCccEEEEcCCC------h---HHHHHHHHHhccCCcEEEE
Q 043260          263 MTHGTGVDYGFECTGV------A---SLISEALEATKLGKGKVMA  298 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~------~---~~~~~~~~~l~~~~G~~v~  298 (332)
                      +.-...||+|+...+.      +   ..+..+.+.|+|+ |++++
T Consensus       100 l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg-G~lii  143 (251)
T d1wzna1         100 IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG-GVFIT  143 (251)
T ss_dssp             CCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             cccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC-cEEEE
Confidence            3333479999986432      1   3578899999998 98875

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0017  Score=52.87  Aligned_cols=98  Identities=20%  Similarity=0.190  Sum_probs=63.6

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .++|+|+|+ |.+|..++..+...|. +|+++.|+.++++.....+...+. .+-   .+. +.+.+...  +.|+||.+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~~~~-gD~---~d~-~~l~~al~--~~d~vi~~   74 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVV-GDV---LQA-ADVDKTVA--GQDAVIVL   74 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEE-SCT---TSH-HHHHHHHT--TCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhccccccccccccc-ccc---cch-hhHHHHhc--CCCEEEEE
Confidence            478999998 9999999998888998 999999998886544344443332 222   222 23333332  58999999


Q ss_pred             CCCh----------HHHHHHHHHhccCC-cEEEEEcCC
Q 043260          276 TGVA----------SLISEALEATKLGK-GKVMAIGAA  302 (332)
Q Consensus       276 ~g~~----------~~~~~~~~~l~~~~-G~~v~~G~~  302 (332)
                      +|..          .....+++.++..+ .+++.++..
T Consensus        75 ~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~  112 (205)
T d1hdoa_          75 LGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (205)
T ss_dssp             CCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             eccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEeee
Confidence            8853          11234455555541 378877653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.45  E-value=0.017  Score=44.95  Aligned_cols=45  Identities=22%  Similarity=0.202  Sum_probs=39.0

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT  243 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~  243 (332)
                      .+|.++|.|.+|...+.-+...|. +|.+.+++.++.+.+.+.++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~   46 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGAS   46 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhcc
Confidence            368899999999998888888999 999999999998888777653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.44  E-value=0.013  Score=45.21  Aligned_cols=82  Identities=15%  Similarity=0.171  Sum_probs=55.5

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      ++.++|+|.+|.+.++-+...|..+|+++++++++.+.+. ++|.. +.+..+    .       .   ...|+||=++-
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~-~~~~~~----~-------v---~~~Div~lavk   66 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE-TSATLP----E-------L---HSDDVLILAVK   66 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE-EESSCC----C-------C---CTTSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc-cccccc----c-------c---cccceEEEecC
Confidence            6889999999998877544456349999999999887665 46653 332221    0       1   24688888876


Q ss_pred             ChHHHHHHHHHhccCCcEEE
Q 043260          278 VASLISEALEATKLGKGKVM  297 (332)
Q Consensus       278 ~~~~~~~~~~~l~~~~G~~v  297 (332)
                       +..+...++-+.+. +.++
T Consensus        67 -P~~~~~v~~~l~~~-~~~v   84 (152)
T d1yqga2          67 -PQDMEAACKNIRTN-GALV   84 (152)
T ss_dssp             -HHHHHHHHTTCCCT-TCEE
T ss_pred             -HHHHHHhHHHHhhc-ccEE
Confidence             34666777777665 5544

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0034  Score=44.37  Aligned_cols=70  Identities=21%  Similarity=0.290  Sum_probs=47.9

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR--KDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~--~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      +|++|+|+|.|..|+++++++...|+ +|++.|.+...  .+.+++ +....+...+   ..   .+      ..+|.|+
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~---~~---~~------~~~d~vi   69 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTPPGLDKLPE-AVERHTGSLN---DE---WL------MAADLIV   69 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSSCTTGGGSCT-TSCEEESBCC---HH---HH------HHCSEEE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcCchhHHHHhh-ccceeecccc---hh---hh------ccCCEEE
Confidence            57889999999999999999999999 99999975532  222222 2333333322   11   11      1579999


Q ss_pred             EcCCCh
Q 043260          274 ECTGVA  279 (332)
Q Consensus       274 d~~g~~  279 (332)
                      -+.|-+
T Consensus        70 ~SPGi~   75 (93)
T d2jfga1          70 ASPGIA   75 (93)
T ss_dssp             ECTTSC
T ss_pred             ECCCCC
Confidence            988875

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.38  E-value=0.0033  Score=51.74  Aligned_cols=100  Identities=16%  Similarity=0.151  Sum_probs=68.4

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCCe--eeCCCCCCCchHHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMTD--FINPDDEPNKSISELVK  261 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~~--v~~~~~~~~~~~~~~~~  261 (332)
                      +.+.++++++++||=+|+|. |..+..+++ .|. +|+++|.+++-++.++    +.+.+.  ++..+.   .++     
T Consensus         7 ll~~~~l~~~~rVLDiGcG~-G~~~~~l~~-~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~---~~l-----   75 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATGG-GHVANAFAP-FVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQM-----   75 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCTT-CHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CC-----
T ss_pred             HHHhcCCCCcCEEEEecccC-cHHHHHHHH-hCC-EEEEEECCHHHHhhhhhccccccccccccccccc---ccc-----
Confidence            44778999999999999974 776666665 476 9999999988766554    345442  332222   111     


Q ss_pred             HhcCCCCccEEEEcCC-----Ch-HHHHHHHHHhccCCcEEEEEc
Q 043260          262 EMTHGTGVDYGFECTG-----VA-SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g-----~~-~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      .+. ...||+|+..-.     +. ..+.++.+.|+|+ |++++.-
T Consensus        76 ~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~i~~  118 (231)
T d1vl5a_          76 PFT-DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVD  118 (231)
T ss_dssp             CSC-TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ccc-ccccccccccccccccCCHHHHHHHHHHhcCCC-cEEEEEe
Confidence            112 236999997533     22 4678999999998 9988753

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0017  Score=57.13  Aligned_cols=105  Identities=13%  Similarity=0.119  Sum_probs=69.3

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHH----cC-----------CCee--eCCC
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEA----FG-----------MTDF--INPD  249 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~----lg-----------a~~v--~~~~  249 (332)
                      +....+++||++||=.|+|. |.++..+|+..|. .+|+.++.+++..+.+++    .+           .+.+  +..+
T Consensus        90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d  168 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  168 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence            34567999999999999977 8888999998874 489999999988877653    11           1111  1111


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCCh-HHHHHHHHHhccCCcEEEEEcC
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVA-SLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      -   .+.   ...+. ...||.||--...+ ..+..+.+.|+|+ |+++.+-.
T Consensus       169 i---~~~---~~~~~-~~~fD~V~LD~p~P~~~l~~~~~~LKpG-G~lv~~~P  213 (324)
T d2b25a1         169 I---SGA---TEDIK-SLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV  213 (324)
T ss_dssp             T---TCC---C--------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred             h---hhc---ccccC-CCCcceEeecCcCHHHHHHHHHHhccCC-CEEEEEeC
Confidence            0   111   11111 22588887545443 4788999999998 99998754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.28  E-value=0.0082  Score=47.46  Aligned_cols=92  Identities=17%  Similarity=0.169  Sum_probs=58.3

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcC---CCeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFG---MTDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lg---a~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      ..++++|+|+|+|+.+.+++..+...+ .+|+++.|+.++.+.+ +.++   ....+..+.             ..-..+
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~-------------~~~~~~   80 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYGNIQAVSMDS-------------IPLQTY   80 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG-------------CCCSCC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHHHHhhccccchhhhcc-------------cccccc
Confidence            457889999999999999888877655 5999999999887644 3343   112221111             112368


Q ss_pred             cEEEEcCCChH---HHHHHHHHhccCCcEEEEEc
Q 043260          270 DYGFECTGVAS---LISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       270 d~vid~~g~~~---~~~~~~~~l~~~~G~~v~~G  300 (332)
                      |++|+|++..-   ......+.+.++ ..++.+-
T Consensus        81 diiIN~tp~g~~~~~~~~~~~~~~~~-~~~~D~v  113 (171)
T d1p77a1          81 DLVINATSAGLSGGTASVDAEILKLG-SAFYDMQ  113 (171)
T ss_dssp             SEEEECCCC-------CCCHHHHHHC-SCEEESC
T ss_pred             ceeeecccccccccccchhhhhhccc-ceeeeee
Confidence            99999988631   111223445665 6666554

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.27  E-value=0.0076  Score=49.05  Aligned_cols=81  Identities=26%  Similarity=0.282  Sum_probs=59.6

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      -.|.+|+|.|-|.+|..+++++...|+ +|++.+.+.++.+....+|++.+ ..     ++       +. ....|+++-
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~~~-~~-----~~-------~~-~~~~DI~iP   89 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-AL-----ED-------VL-STPCDVFAP   89 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CG-----GG-------GG-GCCCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhccccc-Cc-----cc-------cc-cccceeeec
Confidence            478999999999999999999999998 99999999999988888887543 22     11       11 225788887


Q ss_pred             cCCChHHHHHHHHHhc
Q 043260          275 CTGVASLISEALEATK  290 (332)
Q Consensus       275 ~~g~~~~~~~~~~~l~  290 (332)
                      |......-....+.++
T Consensus        90 cA~~~~I~~~~a~~i~  105 (201)
T d1c1da1          90 CAMGGVITTEVARTLD  105 (201)
T ss_dssp             CSCSCCBCHHHHHHCC
T ss_pred             ccccccccHHHHhhhh
Confidence            7654323245555553

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.21  E-value=0.0059  Score=51.78  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=51.9

Q ss_pred             CCCCEEEEECC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCCeeeCCCCCCCchHHHHH---HHhc
Q 043260          195 EKGSSVAVFGL-G--AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMTDFINPDDEPNKSISELV---KEMT  264 (332)
Q Consensus       195 ~~g~~vlV~G~-g--~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~~v~~~~~~~~~~~~~~~---~~~~  264 (332)
                      -+|+++||+|+ |  ++|.+.++.+...|+ +|++++++++..+.++    +.+...+...+.....+..+.+   .+..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL   81 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc
Confidence            36899999986 5  799999999999999 9999999875443332    2222222212211123333333   3333


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      +  .+|+++.+.+.
T Consensus        82 g--~id~lV~nag~   93 (274)
T d2pd4a1          82 G--SLDFIVHSVAF   93 (274)
T ss_dssp             S--CEEEEEECCCC
T ss_pred             C--CCCeEEeeccc
Confidence            2  58999998874

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0019  Score=53.79  Aligned_cols=98  Identities=13%  Similarity=0.087  Sum_probs=64.3

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC---eeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT---DFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~---~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      ..+|++||-+|+|. |..+..+++..+. +|++++.+++-++.+++...+   .+....    .+.......+.+ ..||
T Consensus        51 ~~~g~~VLdIGcG~-G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~fD  123 (229)
T d1zx0a1          51 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK----GLWEDVAPTLPD-GHFD  123 (229)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE----SCHHHHGGGSCT-TCEE
T ss_pred             ccCCCeEEEeeccc-hHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhccccccccc----cccccccccccc-cccc
Confidence            47899999999976 7778888876555 899999999988888764321   111110    122222223333 3788


Q ss_pred             EEE-EcCCC----------hHHHHHHHHHhccCCcEEEEE
Q 043260          271 YGF-ECTGV----------ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       271 ~vi-d~~g~----------~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      .|+ |....          ...+..+.+.|+|| |++++.
T Consensus       124 ~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpG-G~~~~~  162 (229)
T d1zx0a1         124 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYC  162 (229)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEEC
T ss_pred             ceeecccccccccccccCHHHHHHHHHHHcCCC-cEEEEE
Confidence            885 54332          12567788999998 999874

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.01  Score=49.70  Aligned_cols=83  Identities=19%  Similarity=0.222  Sum_probs=54.1

Q ss_pred             CCCCEEEEECC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCCeeeCCCCCCCchHHHHHHHhc-CC
Q 043260          195 EKGSSVAVFGL-G--AVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMTDFINPDDEPNKSISELVKEMT-HG  266 (332)
Q Consensus       195 ~~g~~vlV~G~-g--~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~~v~~~~~~~~~~~~~~~~~~~-~~  266 (332)
                      -+|+++||+|+ |  ++|.+.+..+...|+ +|++++++++..+.++    ..+....+..+.....+..+...+.. ..
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence            47899999987 6  688999999999999 8999999877655443    34544443333212233333333322 22


Q ss_pred             CCccEEEEcCCC
Q 043260          267 TGVDYGFECTGV  278 (332)
Q Consensus       267 ~g~d~vid~~g~  278 (332)
                      ...|+++++.+.
T Consensus        82 ~~~d~~v~~a~~   93 (258)
T d1qsga_          82 PKFDGFVHSIGF   93 (258)
T ss_dssp             SSEEEEEECCCC
T ss_pred             cccceEEEeecc
Confidence            357999998654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.014  Score=52.51  Aligned_cols=105  Identities=19%  Similarity=0.242  Sum_probs=69.6

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-----------C----CCee-eCCCCC
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-----------G----MTDF-INPDDE  251 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-----------g----a~~v-~~~~~~  251 (332)
                      +.+..++++|+++|=+|+|. |..+.++|+..|+.+|++++.++...+.+++.           |    .... +.... 
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f-  285 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF-  285 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS-
T ss_pred             HHHHhCCCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeech-
Confidence            44778999999999999987 99999999999987899999998776665432           1    1111 11111 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCC--C---hHHHHHHHHHhccCCcEEEEEc
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTG--V---ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g--~---~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      .....   .....  ..+|+|+-..-  .   ...+....+.|++| |+++..-
T Consensus       286 ~~~~~---~d~~~--~~adVV~inn~~f~~~l~~~L~ei~r~LKPG-GrIVs~~  333 (406)
T d1u2za_         286 VDNNR---VAELI--PQCDVILVNNFLFDEDLNKKVEKILQTAKVG-CKIISLK  333 (406)
T ss_dssp             TTCHH---HHHHG--GGCSEEEECCTTCCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             hhccc---ccccc--ccceEEEEecccCchHHHHHHHHHHHhcCCC-cEEEEec
Confidence            00111   12211  14788885322  1   13567888899998 9998753

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.05  E-value=0.0062  Score=51.04  Aligned_cols=78  Identities=17%  Similarity=0.288  Sum_probs=50.3

Q ss_pred             CEEEEECC-ChHHHHHHHHHH---HcCCCeEEEEcCCcchHHHHHHc---CCC-eee--CCCCCCCchHHHHHH---Hhc
Q 043260          198 SSVAVFGL-GAVGLGVMDRAR---IQGAAKIIGIDKNPCRKDKGEAF---GMT-DFI--NPDDEPNKSISELVK---EMT  264 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~---~~G~~~Vi~~~~~~~~~~~~~~l---ga~-~v~--~~~~~~~~~~~~~~~---~~~  264 (332)
                      ++|||+|+ +++|+++++.+.   ..|+ +|+++++++++.+.++++   +.. .++  |..+  .++..+.+.   +..
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~   79 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN--FDAYDKLVADIEGVT   79 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC--GGGHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEecc--HHHHHHHHhhhHHHh
Confidence            57999998 999999887654   3577 999999999887654432   222 222  3332  344443333   333


Q ss_pred             CCCCccEEEEcCCC
Q 043260          265 HGTGVDYGFECTGV  278 (332)
Q Consensus       265 ~~~g~d~vid~~g~  278 (332)
                      ...+.|++|++.|.
T Consensus        80 ~~~~iDiLvnNAg~   93 (248)
T d1snya_          80 KDQGLNVLFNNAGI   93 (248)
T ss_dssp             GGGCCSEEEECCCC
T ss_pred             hcCCcceEEeeccc
Confidence            33369999999874

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.05  E-value=0.036  Score=42.94  Aligned_cols=96  Identities=17%  Similarity=0.271  Sum_probs=60.2

Q ss_pred             CEEEEECCChHHH-HHHHHHHHcCCCeEEEE-cCCcc--hHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          198 SSVAVFGLGAVGL-GVMDRARIQGAAKIIGI-DKNPC--RKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       198 ~~vlV~G~g~vG~-~~~~la~~~G~~~Vi~~-~~~~~--~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      -++.|+|+|.+|. ...++++.....+++.+ +++.+  .+++++++|.....       .+ .+.+.+...-.++|+||
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~-------~~-~d~l~~~~~~~~iDiVf   76 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY-------AG-VEGLIKLPEFADIDFVF   76 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES-------SH-HHHHHHSGGGGGEEEEE
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc-------cc-eeeeeecccccccCEEE
Confidence            4789999999986 56778877654466665 44543  34677888765432       22 22333332233699999


Q ss_pred             EcCCChHHHHH--HHHHhccCCcEEEEEcCC
Q 043260          274 ECTGVASLISE--ALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       274 d~~g~~~~~~~--~~~~l~~~~G~~v~~G~~  302 (332)
                      .++....+...  +.+.++.| -.++.....
T Consensus        77 ~ATpag~h~~~~~~~~aa~~G-~~VID~s~a  106 (157)
T d1nvmb1          77 DATSASAHVQNEALLRQAKPG-IRLIDLTPA  106 (157)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTT-CEEEECSTT
T ss_pred             EcCCchhHHHhHHHHHHHHcC-CEEEEcccc
Confidence            99987656554  45556664 556666543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.93  E-value=0.036  Score=43.62  Aligned_cols=44  Identities=16%  Similarity=0.240  Sum_probs=38.3

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      .+|-++|.|.+|...+.-+...|. +|++.++++++.+.+.+.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~   46 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA   46 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcc
Confidence            468899999999998888888999 99999999999887766554

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.86  E-value=0.0039  Score=53.64  Aligned_cols=99  Identities=12%  Similarity=0.092  Sum_probs=64.5

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc----CCC------eeeCCCCCCCchHHHH
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF----GMT------DFINPDDEPNKSISEL  259 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l----ga~------~v~~~~~~~~~~~~~~  259 (332)
                      +..+.+++++||-+|+|. |..+..+++ .|. +|+++|.+++-++.+++.    +..      .+.+.      ++...
T Consensus        50 ~~l~~~~~~~vLD~GcG~-G~~~~~la~-~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~------~~~~~  120 (292)
T d1xvaa_          50 GLLRQHGCHRVLDVACGT-GVDSIMLVE-EGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA------NWLTL  120 (292)
T ss_dssp             HHHHHTTCCEEEESSCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC------CGGGH
T ss_pred             HHhhhcCCCEEEEecCCC-cHHHHHHHH-cCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeec------ccccc
Confidence            334456778999999977 777778876 488 999999999877766542    221      11111      11111


Q ss_pred             HHHhcCCCCccEEEEcCCC--------------hHHHHHHHHHhccCCcEEEE
Q 043260          260 VKEMTHGTGVDYGFECTGV--------------ASLISEALEATKLGKGKVMA  298 (332)
Q Consensus       260 ~~~~~~~~g~d~vid~~g~--------------~~~~~~~~~~l~~~~G~~v~  298 (332)
                      -.......+||.|+.....              ...+..+.+.|+|+ |.+++
T Consensus       121 ~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~  172 (292)
T d1xvaa_         121 DKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG-GLLVI  172 (292)
T ss_dssp             HHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE-EEEEE
T ss_pred             ccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC-cEEEE
Confidence            1233334579999874321              12688999999998 99886

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.85  E-value=0.012  Score=47.85  Aligned_cols=94  Identities=18%  Similarity=0.218  Sum_probs=63.4

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC-eeeCCCCCCCchHHHHHHHhcCCC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT-DFINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~-~v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      -++++++||=+|+|. |..+..+++ .|. +|+++|.+++-++.+++    .+.. ..+..+.   .++     .. ...
T Consensus        34 ~l~~~~~ILDiGcG~-G~~~~~la~-~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~---~~l-----~~-~~~  101 (226)
T d1ve3a1          34 YMKKRGKVLDLACGV-GGFSFLLED-YGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKL-----SF-EDK  101 (226)
T ss_dssp             SCCSCCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT---TSC-----CS-CTT
T ss_pred             hcCCCCEEEEECCCc-chhhhhHhh-hhc-ccccccccccchhhhhhhhcccccccccccccc---ccc-----cc-cCc
Confidence            467889999999977 777777776 577 99999999988776654    3322 2222211   111     01 223


Q ss_pred             CccEEEEcCCC-----h---HHHHHHHHHhccCCcEEEEE
Q 043260          268 GVDYGFECTGV-----A---SLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       268 g~d~vid~~g~-----~---~~~~~~~~~l~~~~G~~v~~  299 (332)
                      .||+|+....-     .   ..+..+.+.|+|+ |++++.
T Consensus       102 ~fD~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~lii~  140 (226)
T d1ve3a1         102 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPS-GKFIMY  140 (226)
T ss_dssp             CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             CceEEEEecchhhCChhHHHHHHHHHHHHcCcC-cEEEEE
Confidence            69999975442     1   2578899999998 998764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.011  Score=48.65  Aligned_cols=107  Identities=10%  Similarity=0.000  Sum_probs=67.2

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe-------------eeCCCCCCCchH
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD-------------FINPDDEPNKSI  256 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~-------------v~~~~~~~~~~~  256 (332)
                      +.....++.+||..|+|. |..+..+++ .|+ +|+++|.+++-.+.+++.-...             ....... ..++
T Consensus        39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~  114 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSG-NISL  114 (229)
T ss_dssp             HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS-SEEE
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCC-cEEE
Confidence            445678999999999977 777777776 699 9999999999888776532111             0000000 0000


Q ss_pred             -HHHHHHh--cCCCCccEEEEcCCC--------hHHHHHHHHHhccCCcEEEEEcC
Q 043260          257 -SELVKEM--THGTGVDYGFECTGV--------ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       257 -~~~~~~~--~~~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                       ...+.++  .....+|+|+++..-        ...+..+.+.|+|+ |++++...
T Consensus       115 ~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg-G~~~l~~~  169 (229)
T d2bzga1         115 YCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK-FQYLLCVL  169 (229)
T ss_dssp             EESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             EEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc-ceEEEEEc
Confidence             0001111  122368999996542        23567899999998 98766643

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0068  Score=50.69  Aligned_cols=47  Identities=23%  Similarity=0.331  Sum_probs=40.7

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHcCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAFGMT  243 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~lga~  243 (332)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++ .+++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCC
Confidence            6899999998 9999999999999999 9999999988876 44666654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.80  E-value=0.047  Score=41.64  Aligned_cols=96  Identities=14%  Similarity=0.048  Sum_probs=64.8

Q ss_pred             CEEEEEC-CChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCC-ccEEEEc
Q 043260          198 SSVAVFG-LGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTG-VDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G-~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g-~d~vid~  275 (332)
                      ++|+|+| .|.+|...+..++..|. +|.+.+++..........+++.++....  .....+.+.+..+... =.+++|+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~~~iiiD~   86 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVP--INLTLETIERLKPYLTENMLLADL   86 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEEC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccc--hhhheeeeecccccccCCceEEEe
Confidence            5799999 69999999999999999 9999999887776666667887765443  2444444444432211 2588998


Q ss_pred             CCChHHHHHHHHHhccCCcEEEE
Q 043260          276 TGVASLISEALEATKLGKGKVMA  298 (332)
Q Consensus       276 ~g~~~~~~~~~~~l~~~~G~~v~  298 (332)
                      ++....+...++...+  .+++.
T Consensus        87 ~Svk~~~~~~~~~~~~--~~~v~  107 (152)
T d2pv7a2          87 TSVKREPLAKMLEVHT--GAVLG  107 (152)
T ss_dssp             CSCCHHHHHHHHHHCS--SEEEE
T ss_pred             cccCHHHHHHHHHHcc--CCEEE
Confidence            8875454444444433  45543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.78  E-value=0.016  Score=47.37  Aligned_cols=101  Identities=17%  Similarity=0.047  Sum_probs=67.0

Q ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCCeeeCCCCCCCchHHHHHHHhcCC
Q 043260          191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMTDFINPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~~v~~~~~~~~~~~~~~~~~~~~~  266 (332)
                      ...++||++||=+|+|. |..+..+++..+..+|+++|.+++..+.++    +.+....+..+.   .... .-...  -
T Consensus        51 ~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~---~~~~-~~~~~--~  123 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKPW-KYSGI--V  123 (209)
T ss_dssp             CCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCGG-GTTTT--C
T ss_pred             cCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeec---cCcc-ccccc--c
Confidence            45789999999999976 777888888877558999999998776553    344333333322   1110 00111  1


Q ss_pred             CCccEEEEcCCCh----HHHHHHHHHhccCCcEEEEE
Q 043260          267 TGVDYGFECTGVA----SLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       267 ~g~d~vid~~g~~----~~~~~~~~~l~~~~G~~v~~  299 (332)
                      ..+|+++......    ..+..+.+.|+++ |.++..
T Consensus       124 ~~vd~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  159 (209)
T d1nt2a_         124 EKVDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIM  159 (209)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ceEEEEEecccChhhHHHHHHHHHHHhccC-CeEEEE
Confidence            2478887755432    2467888999998 988765

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.65  E-value=0.034  Score=45.88  Aligned_cols=102  Identities=26%  Similarity=0.254  Sum_probs=68.9

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHc----CCCeeeCCCCCCCchHHHHHHHhc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAF----GMTDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      +...++||++||=+|+|. |..+..+++..|. .+|+++|.+++..+.+++.    +....+..+...+..    .... 
T Consensus        67 ~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~----~~~~-  140 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEE----YRAL-  140 (227)
T ss_dssp             CCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGG----GTTT-
T ss_pred             cccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccc----cccc-
Confidence            456789999999999977 8888899998863 5899999999887766443    322222222201111    1111 


Q ss_pred             CCCCccEEEEcCCCh----HHHHHHHHHhccCCcEEEEE
Q 043260          265 HGTGVDYGFECTGVA----SLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       265 ~~~g~d~vid~~g~~----~~~~~~~~~l~~~~G~~v~~  299 (332)
                       ...+|+|+.....+    ..+..+.+.|+++ |+++..
T Consensus       141 -~~~vD~i~~d~~~~~~~~~~l~~~~~~Lkpg-G~lvi~  177 (227)
T d1g8aa_         141 -VPKVDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA  177 (227)
T ss_dssp             -CCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -ccceEEEEEEccccchHHHHHHHHHHhcccC-CeEEEE
Confidence             12589888766532    2477888999998 988764

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.64  E-value=0.014  Score=51.09  Aligned_cols=105  Identities=22%  Similarity=0.190  Sum_probs=65.8

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHh-cCCC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEM-THGT  267 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~-~~~~  267 (332)
                      .+++|++||=.++|. |..++.+++ .|+.+|+.+|.+++.++.+++    .|.+.-+....   .+..+.+..+ ..+.
T Consensus       142 ~~~~g~~VLDl~~g~-G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~---~d~~~~~~~~~~~~~  216 (324)
T d2as0a2         142 WVQPGDRVLDVFTYT-GGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV---GSAFEEMEKLQKKGE  216 (324)
T ss_dssp             GCCTTCEEEETTCTT-THHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHHTTC
T ss_pred             hcCCCCeeecccCcc-cchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeee---chhhhhhHHHHhccC
Confidence            367899999887633 333334443 477699999999998887644    45532111111   2333333332 1345


Q ss_pred             CccEEEEcCCC---------------hHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          268 GVDYGFECTGV---------------ASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       268 g~d~vid~~g~---------------~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .||+|+-....               .+.+..+++.|+++ |.++.+....
T Consensus       217 ~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG-G~lv~~s~s~  266 (324)
T d2as0a2         217 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-GILVTCSCSQ  266 (324)
T ss_dssp             CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-EEEEEEECCT
T ss_pred             CCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEEeCCc
Confidence            79999974332               12567788899998 9999887654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.61  E-value=0.014  Score=49.15  Aligned_cols=84  Identities=18%  Similarity=0.228  Sum_probs=54.3

Q ss_pred             CCCCCEEEEECC-C--hHHHHHHHHHHHcCCCeEEEEcCCcchH-H-HHHHcCCCee---eCCCCC-CCchHHHHHHHhc
Q 043260          194 VEKGSSVAVFGL-G--AVGLGVMDRARIQGAAKIIGIDKNPCRK-D-KGEAFGMTDF---INPDDE-PNKSISELVKEMT  264 (332)
Q Consensus       194 ~~~g~~vlV~G~-g--~vG~~~~~la~~~G~~~Vi~~~~~~~~~-~-~~~~lga~~v---~~~~~~-~~~~~~~~~~~~~  264 (332)
                      +-+|+++||+|+ |  ++|.+.++.+...|+ +|++++++.+++ + ..++++....   .+..+. ..++..+.+.+..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~   81 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAI   81 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcc
Confidence            457899999985 4  599999999999999 999999888775 3 3345554321   223220 1123333444333


Q ss_pred             C-CCCccEEEEcCCC
Q 043260          265 H-GTGVDYGFECTGV  278 (332)
Q Consensus       265 ~-~~g~d~vid~~g~  278 (332)
                      . ....|+++++.+.
T Consensus        82 ~~~~~ld~~i~~ag~   96 (268)
T d2h7ma1          82 GAGNKLDGVVHSIGF   96 (268)
T ss_dssp             CTTCCEEEEEECCCC
T ss_pred             ccCCCcceeeecccc
Confidence            2 2358999999873

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.073  Score=46.28  Aligned_cols=104  Identities=17%  Similarity=0.190  Sum_probs=68.9

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-----------CC----CeeeCCCCCC
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-----------GM----TDFINPDDEP  252 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-----------ga----~~v~~~~~~~  252 (332)
                      +.+..+++++++||=+|+|. |..+.++|+..++.++++++.+++..+.+++.           |.    -.++..+- .
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~-~  220 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF-L  220 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT-T
T ss_pred             HHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc-c
Confidence            44778899999999999977 88889999999987899999999876655331           21    12332222 1


Q ss_pred             CchHHHHHHHhcCCCCccEEEEcCC--Ch---HHHHHHHHHhccCCcEEEEEc
Q 043260          253 NKSISELVKEMTHGTGVDYGFECTG--VA---SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       253 ~~~~~~~~~~~~~~~g~d~vid~~g--~~---~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ...+.+.+.      .+|+|+-..-  .+   ..+...++.|++| |++|..-
T Consensus       221 ~~~~~~~~~------~advi~~~~~~f~~~~~~~l~e~~r~LKpG-g~iv~~~  266 (328)
T d1nw3a_         221 SEEWRERIA------NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSK  266 (328)
T ss_dssp             SHHHHHHHH------HCSEEEECCTTTCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             ccccccccC------cceEEEEcceecchHHHHHHHHHHHhCCCC-cEEEEec
Confidence            122222221      2688875322  12   3466778889998 9998753

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.40  E-value=0.022  Score=47.14  Aligned_cols=102  Identities=21%  Similarity=0.120  Sum_probs=66.0

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc----CCCeeeCCCCCCCchHHHHHHHhcC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF----GMTDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      +...++||++||=+|+|. |..+..+++......|+++|.+++..+.+++.    +....+..+...+..+    ...  
T Consensus        68 ~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~----~~~--  140 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEY----ANI--  140 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGG----TTT--
T ss_pred             HhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCccc----ccc--
Confidence            456789999999999976 77788888875445899999999888766554    2222232222111111    111  


Q ss_pred             CCCccEEEEcCCCh----HHHHHHHHHhccCCcEEEEE
Q 043260          266 GTGVDYGFECTGVA----SLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       266 ~~g~d~vid~~g~~----~~~~~~~~~l~~~~G~~v~~  299 (332)
                      ...+|+++......    ..+..+.+.|+++ |.+++.
T Consensus       141 ~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpg-G~~~i~  177 (230)
T d1g8sa_         141 VEKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA  177 (230)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             cceeEEeeccccchHHHHHHHHHHHHhcccC-ceEEEE
Confidence            11356666655432    3467888899998 988765

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.40  E-value=0.019  Score=45.99  Aligned_cols=95  Identities=24%  Similarity=0.313  Sum_probs=61.2

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCCee-eCCCCCCCchHHHHHHHhcCCC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMTDF-INPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~~v-~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      ...++.+||-+|+| .|..+..+++ .|+ +|+++|.+++-++.++    +.|.+.+ +...+         +.++....
T Consensus        27 ~~~~~grvLDiGcG-~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d---------~~~~~~~~   94 (198)
T d2i6ga1          27 KVVAPGRTLDLGCG-NGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVD---------LNTLTFDG   94 (198)
T ss_dssp             TTSCSCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECC---------TTTCCCCC
T ss_pred             ccCCCCcEEEECCC-CCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhccccchhhhhee---------cccccccc
Confidence            33334489999997 4777777776 588 9999999998777654    3454422 11111         11111233


Q ss_pred             CccEEEEcCCC--------hHHHHHHHHHhccCCcEEEEEc
Q 043260          268 GVDYGFECTGV--------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       268 g~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      .||+|+...--        ...+..+.+.|+++ |.+++.-
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~  134 (198)
T d2i6ga1          95 EYDFILSTVVMMFLEAQTIPGLIANMQRCTKPG-GYNLIVA  134 (198)
T ss_dssp             CEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             cccEEEEeeeeecCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence            69999974321        13677888899998 9888764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.34  E-value=0.037  Score=42.52  Aligned_cols=85  Identities=13%  Similarity=0.226  Sum_probs=61.0

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG-EAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTG  277 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~-~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g  277 (332)
                      ++.++|+|.+|.+.+.-+...|. ++++.+++.++.+.+ +++|...+-        +..+.+.      ..|+||-|+-
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~~--------~~~~~~~------~~dvIilavk   66 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYAM--------SHQDLID------QVDLVILGIK   66 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBCS--------SHHHHHH------TCSEEEECSC
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeeec--------hhhhhhh------ccceeeeecc
Confidence            68899999999988886666787 999999998887654 667764332        2222221      4799998886


Q ss_pred             ChHHHHHHHHHhccCCcEEEEEc
Q 043260          278 VASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       278 ~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      - ..+...++.+.++ -.++.+.
T Consensus        67 p-~~~~~vl~~l~~~-~~iis~~   87 (152)
T d2ahra2          67 P-QLFETVLKPLHFK-QPIISMA   87 (152)
T ss_dssp             G-GGHHHHHTTSCCC-SCEEECC
T ss_pred             h-HhHHHHhhhcccc-eeEeccc
Confidence            4 5667778888776 6666554

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.32  E-value=0.049  Score=43.85  Aligned_cols=37  Identities=30%  Similarity=0.310  Sum_probs=33.2

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR  233 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~  233 (332)
                      .|++|.|+|.|.+|..++++++.+|+ +|++.++....
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~~   78 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNP   78 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCccccc
Confidence            47899999999999999999999999 99999876543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.32  E-value=0.014  Score=42.90  Aligned_cols=38  Identities=8%  Similarity=0.281  Sum_probs=33.4

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .++..++|+|+|+|.+|.-+++.++.+|. +|.++.+.+
T Consensus        18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred             ccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence            45556899999999999999999999998 999998764

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.062  Score=45.69  Aligned_cols=102  Identities=19%  Similarity=0.276  Sum_probs=59.3

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEE---EEcCCcchHH----HHHHcC---CC-ee--eCCCCCCCchHHHHHHHhc
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKII---GIDKNPCRKD----KGEAFG---MT-DF--INPDDEPNKSISELVKEMT  264 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi---~~~~~~~~~~----~~~~lg---a~-~v--~~~~~~~~~~~~~~~~~~~  264 (332)
                      .|||+|+ +++|.+++..+...|+ +++   .+.++.++.+    .++++.   .. ..  .|..+  .++..+.+.+..
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga-~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~   80 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD--SKSVAAARERVT   80 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC--HHHHHHHHHTCT
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCC-CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccc--hHhhhhhhhhcc
Confidence            3566798 9999999999988998 543   3344433332    333432   22 12  23333  344444444444


Q ss_pred             CCCCccEEEEcCCCh-------------------------HHHHHHHHHhcc-CCcEEEEEcCCCC
Q 043260          265 HGTGVDYGFECTGVA-------------------------SLISEALEATKL-GKGKVMAIGAANE  304 (332)
Q Consensus       265 ~~~g~d~vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~G~~~~  304 (332)
                      . ...|+++++.|..                         ...+.++..|.+ ++|+++.+++..+
T Consensus        81 ~-g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g  145 (285)
T d1jtva_          81 E-GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGG  145 (285)
T ss_dssp             T-SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGG
T ss_pred             c-cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhh
Confidence            4 3789999988753                         123344444533 2389999987654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.29  E-value=0.032  Score=46.58  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=30.6

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK  234 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~  234 (332)
                      +.||+|+ +++|.+.++.+...|+ +|++++++.++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHH
Confidence            4678898 9999999999999999 999999886653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.0055  Score=47.65  Aligned_cols=93  Identities=13%  Similarity=0.111  Sum_probs=56.9

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCe--eeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTD--FINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~--v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .+|+|+|+|.+|.+.+..+...|. +|.++++++++.+.....+.+.  ......   .+..+.+      ..+|+||-+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~D~iii~   70 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLT---ANDPDFL------ATSDLLLVT   70 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEE---ESCHHHH------HTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCccccccccc---cchhhhh------cccceEEEe
Confidence            479999999999999888888999 9999999887554333333221  110000   1111222      158999999


Q ss_pred             CCChHH---HHHHHHHhccCCcEEEEEcC
Q 043260          276 TGVASL---ISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       276 ~g~~~~---~~~~~~~l~~~~G~~v~~G~  301 (332)
                      +...++   +..+...+.++ ..++.+.+
T Consensus        71 vka~~~~~~~~~l~~~~~~~-~~Iv~~qN   98 (167)
T d1ks9a2          71 LKAWQVSDAVKSLASTLPVT-TPILLIHN   98 (167)
T ss_dssp             SCGGGHHHHHHHHHTTSCTT-SCEEEECS
T ss_pred             ecccchHHHHHhhccccCcc-cEEeeccC
Confidence            998533   22333344444 55666543

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.28  E-value=0.0084  Score=47.62  Aligned_cols=36  Identities=17%  Similarity=0.272  Sum_probs=31.9

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      +++|+|+|+|+.|+.++..++..|...|+++++++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            678999999999999999999999856888887654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.017  Score=46.45  Aligned_cols=39  Identities=26%  Similarity=0.381  Sum_probs=35.1

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG  237 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~  237 (332)
                      ++|.|+|+|.+|...++++...|+ +|++.|++++.++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHH
Confidence            579999999999999999999999 999999999876644

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.19  E-value=0.052  Score=43.27  Aligned_cols=98  Identities=15%  Similarity=0.100  Sum_probs=63.3

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC----eeeCCCCCCCchHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT----DFINPDDEPNKSISEL  259 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~----~v~~~~~~~~~~~~~~  259 (332)
                      +.+.....++++||=+|+|. |..++.+++ .+. +|+++|.++...+.+++    .+..    .++..+.         
T Consensus        44 Li~~l~~~~~~~VLDiGcG~-G~~~~~la~-~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~---------  111 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGY-GVIGIALAD-EVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL---------  111 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST---------
T ss_pred             HHHhCCcCCCCeEEEEeecC-ChhHHHHHh-hcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcch---------
Confidence            33556788999999999865 555666665 455 99999999988776653    2322    2222211         


Q ss_pred             HHHhcCCCCccEEEEcCC---Ch----HHHHHHHHHhccCCcEEEEE
Q 043260          260 VKEMTHGTGVDYGFECTG---VA----SLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       260 ~~~~~~~~g~d~vid~~g---~~----~~~~~~~~~l~~~~G~~v~~  299 (332)
                       .+......||+|+....   ..    ..+..+.+.|+++ |.++++
T Consensus       112 -~~~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  156 (194)
T d1dusa_         112 -YENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVV  156 (194)
T ss_dssp             -TTTCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -hhhhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcC-cEEEEE
Confidence             11112347999997433   21    3467888999998 987654

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.13  E-value=0.058  Score=44.46  Aligned_cols=81  Identities=25%  Similarity=0.295  Sum_probs=55.9

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-HcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE-AFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~-~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      -.|.+|+|.|-|.+|..+++++...|+ +|++++.+..+.+.+. +.|+..+ +.     ++       +. ....|+++
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~~~-~~-----~~-------~~-~~~cDIl~  101 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGADAV-AP-----NA-------IY-GVTCDIFA  101 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCEEC-CG-----GG-------TT-TCCCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCccc-CC-----cc-------cc-cccccEec
Confidence            478999999999999999999999999 9999999888876554 4565432 21     11       11 22578887


Q ss_pred             EcCCChHHHHHHHHHhc
Q 043260          274 ECTGVASLISEALEATK  290 (332)
Q Consensus       274 d~~g~~~~~~~~~~~l~  290 (332)
                      =|.-....-.+....++
T Consensus       102 PcA~~~~I~~~~~~~l~  118 (230)
T d1leha1         102 PCALGAVLNDFTIPQLK  118 (230)
T ss_dssp             ECSCSCCBSTTHHHHCC
T ss_pred             ccccccccChHHhhccC
Confidence            77665322234444453

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.13  E-value=0.14  Score=40.02  Aligned_cols=100  Identities=22%  Similarity=0.237  Sum_probs=64.6

Q ss_pred             EEEEECCChHHHHHHHHHHHcC-CCeEEEEc-CCc-chHHHHHHcCCCeeeCCCCCCCchHHHHHHHhc--C------CC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQG-AAKIIGID-KNP-CRKDKGEAFGMTDFINPDDEPNKSISELVKEMT--H------GT  267 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~-~~~-~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~--~------~~  267 (332)
                      +|.|.|-|-+|...++.+.... . +++.+- .++ .....+.+.+.+......    ...........  .      -.
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~di-eiVaINd~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   78 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDM-ELIGITKTKPDFEAYRAKELGIPVYAASE----EFIPRFEKEGFEVAGTLNDLLE   78 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEEESSCSHHHHHHHHTTCCEEESSG----GGHHHHHHHTCCCSCBHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-eEEEEecCCChHHHHHhhhcCceeecccc----cceeeecccCccccchhhhhhc
Confidence            6899999999999888876554 4 555543 333 334456666665443221    11111111100  0      02


Q ss_pred             CccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          268 GVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       268 g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ++|+|+||+|.-...+.+-..+..+ -+.|+.+.+..
T Consensus        79 ~vDvViEcTG~f~~~~~~~~hl~~G-~k~Vi~s~~~~  114 (172)
T d2czca2          79 KVDIIVDATPGGIGAKNKPLYEKAG-VKAIFQGGEKA  114 (172)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHHT-CEEEECTTSCG
T ss_pred             cCCEEEECCCCCCCHHHHHHHHHcC-CCEEEECCCCc
Confidence            6999999999877778888899987 89999888754

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.07  E-value=0.02  Score=47.48  Aligned_cols=90  Identities=12%  Similarity=0.082  Sum_probs=60.3

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC-eeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT-DFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~-~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      .++++||=+|+|. |..+..+++ .|. +|+++|.+++-++.+++    .|.. .++..+          +.++.....|
T Consensus        36 ~~~~~vLDiGCG~-G~~~~~l~~-~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d----------~~~~~~~~~f  102 (246)
T d1y8ca_          36 LVFDDYLDLACGT-GNLTENLCP-KFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQD----------ISNLNINRKF  102 (246)
T ss_dssp             CCTTEEEEETCTT-STTHHHHGG-GSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCC----------GGGCCCSCCE
T ss_pred             CCCCeEEEEeCcC-CHHHHHHHH-hCC-ccEeeccchhhhhhccccccccCccceeeccc----------hhhhcccccc
Confidence            4567899999975 777777766 577 99999999987766644    3433 333221          2222223479


Q ss_pred             cEEEEcCCC------h----HHHHHHHHHhccCCcEEEE
Q 043260          270 DYGFECTGV------A----SLISEALEATKLGKGKVMA  298 (332)
Q Consensus       270 d~vid~~g~------~----~~~~~~~~~l~~~~G~~v~  298 (332)
                      |+|+...+.      .    ..+..+.+.|+++ |.+++
T Consensus       103 D~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~  140 (246)
T d1y8ca_         103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG-GVFIF  140 (246)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE-EEEEE
T ss_pred             cccceeeeeeeccCCHHHHHHHHHHHHHhCCCC-eEEEE
Confidence            999974332      1    2577888899998 98885

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=95.04  E-value=0.043  Score=46.98  Aligned_cols=75  Identities=20%  Similarity=0.235  Sum_probs=46.5

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC--cc---hHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN--PC---RKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~--~~---~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      +|||+|+ |-+|..++..+...|. +|+++++-  ..   +++.+...+--+++..+-...+.+.+.+.    +.++|+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~----~~~~d~V   76 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLIT----KYMPDSC   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH----HHCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHH----hcCCceE
Confidence            7999998 9999999998888899 89998632  12   22333444333343222211233333333    2368999


Q ss_pred             EEcCCC
Q 043260          273 FECTGV  278 (332)
Q Consensus       273 id~~g~  278 (332)
                      |.+++.
T Consensus        77 ih~aa~   82 (338)
T d1orra_          77 FHLAGQ   82 (338)
T ss_dssp             EECCCC
T ss_pred             Eeeccc
Confidence            998763

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=95.01  E-value=0.054  Score=44.10  Aligned_cols=94  Identities=17%  Similarity=0.209  Sum_probs=63.4

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHH---cCCCeEEEEcCCcchHHHHHH----cCCCe---eeCCCCCCCchHHHHHHH
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARI---QGAAKIIGIDKNPCRKDKGEA----FGMTD---FINPDDEPNKSISELVKE  262 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~---~G~~~Vi~~~~~~~~~~~~~~----lga~~---v~~~~~~~~~~~~~~~~~  262 (332)
                      .++++.+||-+|+|. |..+..+++.   .++ +|+++|.+++-++.+++    .+...   ..+.+          ..+
T Consensus        36 ~~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d----------~~~  103 (225)
T d1im8a_          36 FVTADSNVYDLGCSR-GAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCND----------IRH  103 (225)
T ss_dssp             HCCTTCEEEEESCTT-CHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSC----------TTT
T ss_pred             hcCCCCEEEEeccch-hhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhccch----------hhc
Confidence            368999999999966 6666777764   466 99999999988887764    23221   22211          112


Q ss_pred             hcCCCCccEEEEcCCC--------hHHHHHHHHHhccCCcEEEEEc
Q 043260          263 MTHGTGVDYGFECTGV--------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~--------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      .. ...+|+++-+..-        ...+..+.+.|+|+ |.+++.-
T Consensus       104 ~~-~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~li~~~  147 (225)
T d1im8a_         104 VE-IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN-GVLVLSE  147 (225)
T ss_dssp             CC-CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cc-cccceeeEEeeeccccChhhHHHHHHHHHHhCCCC-ceeeccc
Confidence            22 2257777764331        14689999999998 9999764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.00  E-value=0.12  Score=39.33  Aligned_cols=39  Identities=18%  Similarity=0.304  Sum_probs=32.6

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE  238 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~  238 (332)
                      +|.|+|.|.+|...+.-+...|. +|++.++..++....+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~~~~~~~   40 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIER   40 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchhHHHHHh
Confidence            68899999999999999999999 8999887776655443

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=94.95  E-value=0.15  Score=39.14  Aligned_cols=42  Identities=19%  Similarity=0.223  Sum_probs=35.2

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD  235 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~  235 (332)
                      .++..+|.|+|+|.+|..++.++...+..+++++|.++++.+
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~   45 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPE   45 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccch
Confidence            356688999999999998888888888779999998887654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.03  Score=47.29  Aligned_cols=96  Identities=17%  Similarity=0.129  Sum_probs=66.5

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHHcCCC-eeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQ-GAAKIIGIDKNPCRKDKGEAFGMT-DFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~-G~~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      ...++.+||=+|+|. |..+..+++.. +. +++.+|.+++-++.+++.... ..+..+.   .++     .+ ....||
T Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~d~---~~l-----~~-~~~sfD  149 (268)
T d1p91a_          81 LDDKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRL-----PF-SDTSMD  149 (268)
T ss_dssp             SCTTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT---TSC-----SB-CTTCEE
T ss_pred             cCCCCCEEEEeCCCC-cHHHHHHHHHCCCC-EEEEecchHhhhhhhhcccccccceeeeh---hhc-----cC-CCCCEE
Confidence            346778899999976 67777777765 45 899999999988888765433 2222111   111     11 233699


Q ss_pred             EEEEcCCChHHHHHHHHHhccCCcEEEEEcC
Q 043260          271 YGFECTGVASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       271 ~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      +|+....- ..+.++.+.|+|+ |.+++.-.
T Consensus       150 ~v~~~~~~-~~~~e~~rvLkpg-G~l~~~~p  178 (268)
T d1p91a_         150 AIIRIYAP-CKAEELARVVKPG-GWVITATP  178 (268)
T ss_dssp             EEEEESCC-CCHHHHHHHEEEE-EEEEEEEE
T ss_pred             EEeecCCH-HHHHHHHHHhCCC-cEEEEEee
Confidence            99976544 5788999999998 99988753

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.87  E-value=0.013  Score=49.06  Aligned_cols=34  Identities=26%  Similarity=0.460  Sum_probs=31.0

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      |++|+|+|+|..|+.++..++..|. +|++++.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            5789999999999999999999999 999998754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.74  E-value=0.041  Score=40.24  Aligned_cols=41  Identities=20%  Similarity=0.219  Sum_probs=36.2

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      +.....++++|+|+|+|.+|+-.+..++.+|. +|.++.+.+
T Consensus        15 ~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~   55 (121)
T d1mo9a2          15 EELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE   55 (121)
T ss_dssp             HHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             HHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence            45567789999999999999999999999998 999998765

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.73  E-value=0.015  Score=46.61  Aligned_cols=84  Identities=11%  Similarity=0.041  Sum_probs=55.4

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC------eeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT------DFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~------~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      +|.|+|+|..|.+.+.++...|. +|.+.+++++..+.+.+-+-.      ..+...-....++.+.+      .+.|+|
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~------~~ad~i   81 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY------NGAEII   81 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH------TTCSCE
T ss_pred             eEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhcc------CCCCEE
Confidence            69999999999999999988887 899999998888766543311      11110000112233332      258999


Q ss_pred             EEcCCChHHHHHHHHHhc
Q 043260          273 FECTGVASLISEALEATK  290 (332)
Q Consensus       273 id~~g~~~~~~~~~~~l~  290 (332)
                      |-++.+. .+...++.+.
T Consensus        82 iiavPs~-~~~~~~~~~~   98 (189)
T d1n1ea2          82 LFVIPTQ-FLRGFFEKSG   98 (189)
T ss_dssp             EECSCHH-HHHHHHHHHC
T ss_pred             EEcCcHH-HHHHHHHHHH
Confidence            9999984 5566665543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.73  E-value=0.075  Score=41.59  Aligned_cols=44  Identities=18%  Similarity=0.247  Sum_probs=38.1

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM  242 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga  242 (332)
                      .+|-|+|.|.+|...+.-+...|. +|++.++++++.+.+.+.++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~   45 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANA   45 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTT
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCC
Confidence            358899999999999998889999 99999999999887766554

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=94.69  E-value=0.063  Score=41.60  Aligned_cols=88  Identities=14%  Similarity=0.117  Sum_probs=59.6

Q ss_pred             EEEEECCChHHHH-HHHHHHHcCCCeEEEEcCCcchHHH-HHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          199 SVAVFGLGAVGLG-VMDRARIQGAAKIIGIDKNPCRKDK-GEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       199 ~vlV~G~g~vG~~-~~~la~~~G~~~Vi~~~~~~~~~~~-~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      +|.|+|+|.+|.- .+...+..+--++++++.++++.+. +++++...++..-+           ++.. ..+|+|+-++
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----------~ll~-~~iD~V~I~t   70 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYR-----------DVLQ-YGVDAVMIHA   70 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTT-----------GGGG-GCCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHH-----------Hhcc-cccceecccc
Confidence            6889999999954 5666665543377888888877664 45677655442211           1221 2589999999


Q ss_pred             CChHHHHHHHHHhccCCcEEEEEc
Q 043260          277 GVASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       277 g~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ....+...+.+++..+  .=+++-
T Consensus        71 p~~~H~~~~~~al~~g--k~V~~E   92 (167)
T d1xeaa1          71 ATDVHSTLAAFFLHLG--IPTFVD   92 (167)
T ss_dssp             CGGGHHHHHHHHHHTT--CCEEEE
T ss_pred             cccccccccccccccc--cccccC
Confidence            9887888888888874  335554

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=94.68  E-value=0.058  Score=43.14  Aligned_cols=36  Identities=19%  Similarity=0.406  Sum_probs=32.5

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      .|+++.|+|.|.+|...+++++.+|. +|+..++...
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   81 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRA   81 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc-cccccccccc
Confidence            37899999999999999999999999 9999987654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.65  E-value=0.14  Score=38.92  Aligned_cols=96  Identities=24%  Similarity=0.290  Sum_probs=60.1

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHH-HHHHc-------CCCeeeCCCCCCCchHHHHHHHhcC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKD-KGEAF-------GMTDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~-~~~~l-------ga~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      ..+.+|.|+|+|.+|..++..+...+. .+++++|.++++.+ .+.++       +....+...+     +    .++  
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d-----~----~~l--   72 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD-----Y----DDC--   72 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECC-----G----GGT--
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECC-----H----HHh--
Confidence            456789999999999998888887774 58999999887743 12111       1111121111     1    111  


Q ss_pred             CCCccEEEEcCCCh---------------HH---HHHHHHHhccCCcEEEEEcCCC
Q 043260          266 GTGVDYGFECTGVA---------------SL---ISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       266 ~~g~d~vid~~g~~---------------~~---~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                       .+.|+|+-+.|.+               ..   +...+...+|. +.++.+.++-
T Consensus        73 -~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~-a~~ivvtNPv  126 (148)
T d1ldna1          73 -RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQ-GLFLVATNPV  126 (148)
T ss_dssp             -TTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCC-SEEEECSSSH
T ss_pred             -ccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCC-ceEEEecCcc
Confidence             3689999988864               11   12233344566 8888887664

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.64  E-value=0.055  Score=46.32  Aligned_cols=97  Identities=16%  Similarity=0.114  Sum_probs=66.5

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC---------CC-eeeCCCCCCCchHHHHHHHhc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG---------MT-DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg---------a~-~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      ..-++|||+|.|. |..+-.+++..+..+|.+++.+++-.+.++++-         .. .++.      .+-.+.+++..
T Consensus        79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~------~Da~~~l~~~~  151 (290)
T d1xj5a_          79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI------GDGVAFLKNAA  151 (290)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE------SCHHHHHHTSC
T ss_pred             CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE------ccHHHHHhhcc
Confidence            4457899998765 555557777767778999999999888887742         11 1222      23445565544


Q ss_pred             CCCCccEEEEcCCC----------hHHHHHHHHHhccCCcEEEEEc
Q 043260          265 HGTGVDYGFECTGV----------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       265 ~~~g~d~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      . ..+|+||--..+          .+.++.+.+.|+++ |.++.-.
T Consensus       152 ~-~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~  195 (290)
T d1xj5a_         152 E-GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQA  195 (290)
T ss_dssp             T-TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             c-cCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCC-cEEEEec
Confidence            3 379988853332          35688999999998 9888754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.043  Score=47.30  Aligned_cols=97  Identities=21%  Similarity=0.170  Sum_probs=56.6

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH---HHHHcCCC---eeeCCCCCCCchHHHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD---KGEAFGMT---DFINPDDEPNKSISELVK  261 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~---~~~~lga~---~v~~~~~~~~~~~~~~~~  261 (332)
                      +.+.....+|++||-+|+|. |.+++.+|+ .|+++|++++.++.-..   ..++.+..   .++..+.          .
T Consensus        27 i~~~~~~~~~~~VLDiGcG~-G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~----------~   94 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCGT-GILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI----------E   94 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT----------T
T ss_pred             HHhccccCCcCEEEEECCCC-CHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeH----------H
Confidence            43444667899999999973 666665555 68779999998875432   22334432   2232221          1


Q ss_pred             Hh-cCCCCccEEEEcCC-----ChH---H-HHHHHHHhccCCcEEE
Q 043260          262 EM-THGTGVDYGFECTG-----VAS---L-ISEALEATKLGKGKVM  297 (332)
Q Consensus       262 ~~-~~~~g~d~vid~~g-----~~~---~-~~~~~~~l~~~~G~~v  297 (332)
                      ++ .+...+|+|+...-     ...   . +...-+.|+|+ |+++
T Consensus        95 ~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~-G~ii  139 (311)
T d2fyta1          95 EVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG-GSVY  139 (311)
T ss_dssp             TSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEE-EEEE
T ss_pred             HhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCC-cEEe
Confidence            11 12347999986221     111   2 23334578998 8876

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.62  E-value=0.022  Score=47.18  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=31.5

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ..++|+|+|+|+.|++++..++..|. +|+++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            35789999999999999999999999 999999764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.022  Score=45.31  Aligned_cols=96  Identities=21%  Similarity=0.219  Sum_probs=60.4

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch-----------------------HHHHHHcCCCeeeCCC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR-----------------------KDKGEAFGMTDFINPD  249 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~-----------------------~~~~~~lga~~v~~~~  249 (332)
                      ....+++|+|+|+|+.|+.++..+...|. +|++++.+++-                       .+.++++|.+..++..
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~  117 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT  117 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCC
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCE
Confidence            34567899999999999999999999999 99999976421                       1123445655444432


Q ss_pred             CCCCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          250 DEPNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      -  ..       +  ....+|.||-++|... .......+..+ ..+..+|..
T Consensus       118 V--t~-------~--~~~~~d~vilAtG~~~-~~~~~pg~~~g-~~v~viggg  157 (179)
T d1ps9a3         118 V--TA-------D--QLQAFDETILASGIPN-RALAQPLIDSG-KTVHLIGGC  157 (179)
T ss_dssp             C--CS-------S--SSCCSSEEEECCCEEC-CTTHHHHHTTT-CCEEECGGG
T ss_pred             E--cc-------c--ccccceeEEEeecCCC-cccccchhccC-CEEEEECCc
Confidence            2  00       0  1236889999888642 11222333344 566666643

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.60  E-value=0.044  Score=46.17  Aligned_cols=97  Identities=20%  Similarity=0.136  Sum_probs=63.5

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC---eeeCCCCCCCchHHHHHHHhcC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT---DFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      .+++|++||-.++|. |..++.+|+. |..+|++++.+++..+.+++    .|.+   .+++.+.          .++..
T Consensus       104 ~~~~g~~VlD~~aG~-G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~----------~~~~~  171 (260)
T d2frna1         104 VAKPDELVVDMFAGI-GHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN----------RDFPG  171 (260)
T ss_dssp             HCCTTCEEEETTCTT-TTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT----------TTCCC
T ss_pred             hcCCccEEEECcceE-cHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch----------HHhcc
Confidence            468999999987743 4444556665 43499999999998877643    3543   3343322          22333


Q ss_pred             CCCccEEEEc-C-CChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          266 GTGVDYGFEC-T-GVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       266 ~~g~d~vid~-~-g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ...||.|+-. . .+...+..+++.++++ |.+..+...
T Consensus       172 ~~~~D~Ii~~~p~~~~~~l~~a~~~l~~g-G~lh~~~~~  209 (260)
T d2frna1         172 ENIADRILMGYVVRTHEFIPKALSIAKDG-AIIHYHNTV  209 (260)
T ss_dssp             CSCEEEEEECCCSSGGGGHHHHHHHEEEE-EEEEEEEEE
T ss_pred             CCCCCEEEECCCCchHHHHHHHHhhcCCC-CEEEEEecc
Confidence            4468977653 2 3345778999999998 988766543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.59  E-value=0.032  Score=40.73  Aligned_cols=36  Identities=19%  Similarity=0.196  Sum_probs=31.7

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      ..++++|+|+|.+|.-+++.+..+|. +|.++.+.+.
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             cCCeEEEECCCccceeeeeeeccccc-EEEEEEecce
Confidence            34789999999999999999999998 9999987653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.023  Score=41.37  Aligned_cols=38  Identities=21%  Similarity=0.400  Sum_probs=32.7

Q ss_pred             CCCC-CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          194 VEKG-SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       194 ~~~g-~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      +.++ .+|.|+|+|.+|.+.++-++.+|. ++++.|.++.
T Consensus         7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~   45 (111)
T d1kjqa2           7 LRPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD   45 (111)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            3444 569999999999999999999999 9999987654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.56  E-value=0.048  Score=43.89  Aligned_cols=73  Identities=18%  Similarity=0.141  Sum_probs=44.8

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAA-KIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~-~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .+|||+|+ |.+|..++..+...|.. .|+.+.+++++.+.... +.. ++..+.   .+.. .+.+...  ++|.|+.+
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~-~~~~d~---~~~~-~~~~~~~--~~d~vi~~   75 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EAD-VFIGDI---TDAD-SINPAFQ--GIDALVIL   75 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTT-EEECCT---TSHH-HHHHHHT--TCSEEEEC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcE-EEEeee---cccc-ccccccc--cceeeEEE
Confidence            58999998 99999999999988862 45566676655443321 222 222221   2222 2333322  58999998


Q ss_pred             CCC
Q 043260          276 TGV  278 (332)
Q Consensus       276 ~g~  278 (332)
                      .+.
T Consensus        76 a~~   78 (252)
T d2q46a1          76 TSA   78 (252)
T ss_dssp             CCC
T ss_pred             Eee
Confidence            763

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.48  E-value=0.054  Score=45.25  Aligned_cols=41  Identities=7%  Similarity=0.053  Sum_probs=32.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHH---cCCCeEEEEcCCcchHHHH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARI---QGAAKIIGIDKNPCRKDKG  237 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~---~G~~~Vi~~~~~~~~~~~~  237 (332)
                      .|+++||+|+ +++|.++++.+..   .|+ +|+++++++++++.+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~   49 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHH
Confidence            4677788898 9999987765543   588 999999999887654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.026  Score=41.26  Aligned_cols=34  Identities=26%  Similarity=0.213  Sum_probs=31.0

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .++++|+|+|.+|+-+++.++.+|. +|.++.+.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence            4689999999999999999999999 999998765

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.37  E-value=0.034  Score=47.26  Aligned_cols=37  Identities=22%  Similarity=0.296  Sum_probs=32.1

Q ss_pred             CCCEEEEECC-C--hHHHHHHHHHHHcCCCeEEEEcCCcch
Q 043260          196 KGSSVAVFGL-G--AVGLGVMDRARIQGAAKIIGIDKNPCR  233 (332)
Q Consensus       196 ~g~~vlV~G~-g--~vG~~~~~la~~~G~~~Vi~~~~~~~~  233 (332)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|++++++++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~   46 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPAL   46 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchhh
Confidence            6889999997 5  899999999999999 99998876543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.31  E-value=0.39  Score=36.26  Aligned_cols=40  Identities=28%  Similarity=0.275  Sum_probs=33.1

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHH
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKD  235 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~  235 (332)
                      ...+|.|+|+|.+|..++..+...| +.+++++|.++++.+
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~   44 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTK   44 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhH
Confidence            4568999999999999888888777 358999999887654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=94.30  E-value=0.083  Score=45.72  Aligned_cols=102  Identities=14%  Similarity=0.139  Sum_probs=63.7

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCCe--eeCCCCCCCchHHHHHHHhcCC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMTD--FINPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~~~~~~~~  266 (332)
                      ...+|++||=.++|. |..++.+++  |..+|+.+|.+++.++.+++    .|.+.  ++..+.   .++.+.+.+  .+
T Consensus       142 ~~~~g~rVLDl~~gt-G~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~---~~~~~~~~~--~~  213 (318)
T d1wxxa2         142 ERFRGERALDVFSYA-GGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA---FDLLRRLEK--EG  213 (318)
T ss_dssp             GGCCEEEEEEETCTT-THHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCH---HHHHHHHHH--TT
T ss_pred             HHhCCCeeeccCCCC-cHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccH---HHHhhhhHh--hh
Confidence            345799999987644 333345554  33499999999999887754    46542  232221   233332322  24


Q ss_pred             CCccEEEEcCCC---------------hHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          267 TGVDYGFECTGV---------------ASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       267 ~g~d~vid~~g~---------------~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ..||+|+-....               ...+..+++.|+|+ |.++......
T Consensus       214 ~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG-G~Lv~~scs~  264 (318)
T d1wxxa2         214 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG-GILATASCSH  264 (318)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE-EEEEEEECCT
T ss_pred             cCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCCc
Confidence            479999963321               13466888899998 9999887654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.29  E-value=0.032  Score=41.16  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=30.9

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .++++|+|+|.+|+-+++++..+|. +|.++.+.+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence            4689999999999999999999999 999998754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.27  E-value=0.081  Score=40.23  Aligned_cols=99  Identities=12%  Similarity=0.126  Sum_probs=60.3

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHcC-CCeeeCCCCC-CCchHHHHHHHhcCCCCccEEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAFG-MTDFINPDDE-PNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~lg-a~~v~~~~~~-~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      .+|.|+|| |.+|..++.++...+. .+++++|.++.+-+.. .+- ++........ ...+..+.+      ++.|+|+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~-Dl~~~~~~~~~~~~~~~~~~~~~~------~~aDivV   73 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA-DLSHIETRATVKGYLGPEQLPDCL------KGCDVVV   73 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH-HHTTSSSSCEEEEEESGGGHHHHH------TTCSEEE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH-HHhhhhhhcCCCeEEcCCChHHHh------CCCCEEE
Confidence            47899997 9999999999988885 7899999876554332 321 1111100000 013333333      2689999


Q ss_pred             EcCCCh---------------HHHHHHH---HHhccCCcEEEEEcCCCC
Q 043260          274 ECTGVA---------------SLISEAL---EATKLGKGKVMAIGAANE  304 (332)
Q Consensus       274 d~~g~~---------------~~~~~~~---~~l~~~~G~~v~~G~~~~  304 (332)
                      -+.|.+               ..+.+..   .--.|. +.++.+.++-+
T Consensus        74 itag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~-~iiivvtNPvD  121 (144)
T d1mlda1          74 IPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPD-AMICIISNPVN  121 (144)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTT-SEEEECSSCHH
T ss_pred             ECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCC-eEEEEecCchh
Confidence            998853               1222222   233566 89999988753

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.27  E-value=0.031  Score=48.43  Aligned_cols=94  Identities=19%  Similarity=0.122  Sum_probs=56.3

Q ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH---HHHHcCCC---eeeCCCCCCCchHHHHHHHhcC
Q 043260          192 FKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD---KGEAFGMT---DFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       192 ~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~---~~~~lga~---~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      ..+.+|++||-+|+|. |.+++.+++ .|+++|++++.++.-..   .+++.+..   .++..+.   .++      ...
T Consensus        29 ~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~---~~~------~~~   97 (316)
T d1oria_          29 RHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV---EEV------ELP   97 (316)
T ss_dssp             HHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCT---TTC------CCS
T ss_pred             cccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccH---HHc------ccc
Confidence            3456899999999976 666665555 68778999998864322   22333432   2222221   111      122


Q ss_pred             CCCccEEEEcCCC---------hHHHHHHHHHhccCCcEEE
Q 043260          266 GTGVDYGFECTGV---------ASLISEALEATKLGKGKVM  297 (332)
Q Consensus       266 ~~g~d~vid~~g~---------~~~~~~~~~~l~~~~G~~v  297 (332)
                      ...+|+|+...-.         ...+...-+.|+|+ |+++
T Consensus        98 ~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~-G~ii  137 (316)
T d1oria_          98 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD-GLIF  137 (316)
T ss_dssp             SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             cceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC-eEEE
Confidence            3479999863221         13455667899998 8876

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.27  E-value=0.024  Score=45.26  Aligned_cols=39  Identities=28%  Similarity=0.439  Sum_probs=34.8

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG  237 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~  237 (332)
                      ++|.|+|+|.+|...+.++...|+ +|++.|++++.++.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhh
Confidence            579999999999999999999999 999999999876644

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.25  E-value=0.036  Score=48.17  Aligned_cols=47  Identities=23%  Similarity=0.287  Sum_probs=39.0

Q ss_pred             hhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 043260          191 EFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE  238 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~  238 (332)
                      ..-+++|++|||+|+ |-+|..++..+...|. +|+++.++..+.+..+
T Consensus         5 ~~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             TCSSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHH
Confidence            344678999999998 9999999988888898 9999988877665443

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.24  E-value=0.042  Score=40.30  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=31.1

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ..++++|+|+|.+|+-.++.++.+|. +|.++.+.+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence            44889999999999999999999999 899987654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.16  E-value=0.25  Score=38.57  Aligned_cols=88  Identities=16%  Similarity=0.181  Sum_probs=59.5

Q ss_pred             EEEEECCChHHHHHHHHHHHc-CCCeEEE-EcCCcchHH-HHHHcCCC---eeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          199 SVAVFGLGAVGLGVMDRARIQ-GAAKIIG-IDKNPCRKD-KGEAFGMT---DFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~-G~~~Vi~-~~~~~~~~~-~~~~lga~---~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      ++.|+|+|.+|...++.++.. ++ +|++ .++++++.+ .+++++..   .++       .++.+.+.    ...+|+|
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ll~----~~~iD~v   70 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANNYPESTKIH-------GSYESLLE----DPEIDAL   70 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCCTTCEEE-------SSHHHHHH----CTTCCEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccccccceeec-------CcHHHhhh----cccccee
Confidence            588999999999888888876 45 6664 577776654 44666642   232       23333332    2368999


Q ss_pred             EEcCCChHHHHHHHHHhccCCcEEEEEc
Q 043260          273 FECTGVASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       273 id~~g~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      +-++....+...+..++..  |.=+++-
T Consensus        71 ~I~tp~~~h~~~~~~~l~~--g~~v~~E   96 (184)
T d1ydwa1          71 YVPLPTSLHVEWAIKAAEK--GKHILLE   96 (184)
T ss_dssp             EECCCGGGHHHHHHHHHTT--TCEEEEC
T ss_pred             eecccchhhcchhhhhhhc--cceeecc
Confidence            9999988788888888886  4444554

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.046  Score=45.37  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=31.4

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ...+|+|+|+|++|-.++..+...|.++++++|.+
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            34689999999999999999999999999999854

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.13  E-value=0.065  Score=39.44  Aligned_cols=43  Identities=21%  Similarity=0.209  Sum_probs=35.8

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      +.+...-.++++|+|+|+|.+|+-+++.+..+|. +|.++++.+
T Consensus        21 i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~   63 (123)
T d1nhpa2          21 LKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD   63 (123)
T ss_dssp             HHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             HHHHhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence            3344455677899999999999999999999999 999997764

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.09  E-value=0.079  Score=42.40  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=33.1

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      -.|++|.|+|.|.+|...+++++.+|+ +|+..++...
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   83 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLS   83 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSC
T ss_pred             eeCceEEEeccccccccceeeeecccc-ceeeccCccc
Confidence            357899999999999999999999999 9999987543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.02  Score=38.84  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=30.9

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR  233 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~  233 (332)
                      ++|.|+|+|.+|.+.++-++.+|. ++++.+.++..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCCC
Confidence            478999999999999999999999 89998876543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.96  E-value=0.04  Score=43.08  Aligned_cols=39  Identities=23%  Similarity=0.344  Sum_probs=33.9

Q ss_pred             CEEEEE-CCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 043260          198 SSVAVF-GLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG  237 (332)
Q Consensus       198 ~~vlV~-G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~  237 (332)
                      .+|.|+ |+|.+|.+.++.+...|. +|++.+|++++.+.+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l   40 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAK   40 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            368898 569999999999999999 999999999887644

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=93.92  E-value=0.3  Score=38.05  Aligned_cols=89  Identities=13%  Similarity=0.088  Sum_probs=59.1

Q ss_pred             EEEEECCChHHHH-HHHHHHHcCCC-eEE-EEcCCcchHHH-HHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          199 SVAVFGLGAVGLG-VMDRARIQGAA-KII-GIDKNPCRKDK-GEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       199 ~vlV~G~g~vG~~-~~~la~~~G~~-~Vi-~~~~~~~~~~~-~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      ++.|+|+|.+|.- .+...+...-. +|+ +++++.++.+. +++++...++.       ++.+.+.    ...+|+|+-
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~-------~~~ell~----~~~id~v~I   73 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD-------SYEELLE----SGLVDAVDL   73 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES-------CHHHHHH----SSCCSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceee-------eeecccc----ccccceeec
Confidence            6889999999964 56666655421 555 46777776654 56677665542       2333332    336899999


Q ss_pred             cCCChHHHHHHHHHhccCCcEEEEEc
Q 043260          275 CTGVASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       275 ~~g~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ++....+...+..++..  |.=|++-
T Consensus        74 ~tp~~~h~~~~~~al~~--gk~V~~E   97 (181)
T d1zh8a1          74 TLPVELNLPFIEKALRK--GVHVICE   97 (181)
T ss_dssp             CCCGGGHHHHHHHHHHT--TCEEEEE
T ss_pred             ccccccccccccccccc--chhhhcC
Confidence            99987778888888876  4445554

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.85  E-value=0.19  Score=34.74  Aligned_cols=68  Identities=16%  Similarity=0.263  Sum_probs=49.2

Q ss_pred             CEEEEECCChHHHH-HHHHHHHcCCCeEEEEcCCc-chHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          198 SSVAVFGLGAVGLG-VMDRARIQGAAKIIGIDKNP-CRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G~g~vG~~-~~~la~~~G~~~Vi~~~~~~-~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      .+|-++|-|++|.. ++++++..|+ .|.+.|..+ +..+.++++|.......+.   +++          .++|+|+-+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~---~~i----------~~~d~vV~S   67 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFVPHSA---DNW----------YDPDLVIKT   67 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEESSCCT---TSC----------CCCSEEEEC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEeeecc---ccc----------CCCCEEEEe
Confidence            46777898888875 5789999999 999999887 3456788999865443322   221          258999987


Q ss_pred             CCCh
Q 043260          276 TGVA  279 (332)
Q Consensus       276 ~g~~  279 (332)
                      ..-+
T Consensus        68 sAI~   71 (89)
T d1j6ua1          68 PAVR   71 (89)
T ss_dssp             TTCC
T ss_pred             cCcC
Confidence            7654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=93.81  E-value=0.043  Score=46.58  Aligned_cols=96  Identities=16%  Similarity=0.075  Sum_probs=66.5

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-----CC--C---eeeCCCCCCCchHHHHHHHhc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-----GM--T---DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-----ga--~---~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      ...++|||+|.|. |..+..+++..+..+|.+++.+++-.+.++++     ++  +   .++.      .+..+.+++ +
T Consensus        74 ~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~------~D~~~~l~~-~  145 (274)
T d1iy9a_          74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV------DDGFMHIAK-S  145 (274)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE------SCSHHHHHT-C
T ss_pred             CCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEe------chHHHHHhh-c
Confidence            4567999998866 55666777777767999999999988888764     22  1   2222      223344544 2


Q ss_pred             CCCCccEEEEcCC----------ChHHHHHHHHHhccCCcEEEEEc
Q 043260          265 HGTGVDYGFECTG----------VASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       265 ~~~g~d~vid~~g----------~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                       ...+|+||--..          +.+.++.+.+.|+++ |.++.-.
T Consensus       146 -~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~-Gv~v~q~  189 (274)
T d1iy9a_         146 -ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT  189 (274)
T ss_dssp             -CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred             -CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC-ceEEEec
Confidence             347999986432          235688999999998 9988754

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.13  Score=44.40  Aligned_cols=73  Identities=18%  Similarity=0.131  Sum_probs=45.4

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC----cchHHHHHHc---CCCee-eCCCCCCCchHHHHHHHhcCCCC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN----PCRKDKGEAF---GMTDF-INPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~----~~~~~~~~~l---ga~~v-~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ++|||+|+ |-+|..++..+...|. +|+++++.    .......+..   ....+ .|..+  .+.+.+.++    ..+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~l~~~~~----~~~   73 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN--EALMTEILH----DHA   73 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTC--HHHHHHHHH----HTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCC--HHHHHHHHh----ccC
Confidence            47999998 9999999999999998 99998752    2222333222   23222 12222  122323333    237


Q ss_pred             ccEEEEcCC
Q 043260          269 VDYGFECTG  277 (332)
Q Consensus       269 ~d~vid~~g  277 (332)
                      +|+||.+++
T Consensus        74 ~d~ViHlAa   82 (338)
T d1udca_          74 IDTVIHFAG   82 (338)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEECCC
Confidence            999999875

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=93.72  E-value=0.081  Score=44.78  Aligned_cols=97  Identities=16%  Similarity=0.228  Sum_probs=65.2

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhcCCC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      ++.++.+||=+|+|. |..+..+++..+. .+|+++|.+++-++.+++    .+.+..+...+         +.++.-..
T Consensus        24 ~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d---------~~~~~~~~   93 (281)
T d2gh1a1          24 KITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD---------ATEIELND   93 (281)
T ss_dssp             CCCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESC---------TTTCCCSS
T ss_pred             ccCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccc---------cccccccC
Confidence            567788999999975 8888888886542 389999999988776654    34332221111         11111123


Q ss_pred             CccEEEEcCC-----Ch-HHHHHHHHHhccCCcEEEEEc
Q 043260          268 GVDYGFECTG-----VA-SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       268 g~d~vid~~g-----~~-~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      .||+|+....     ++ ..+..+.+.|+|+ |.++..-
T Consensus        94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~lii~~  131 (281)
T d2gh1a1          94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKG-GKIICFE  131 (281)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             CceEEEEehhhhcCCCHHHHHHHHHHHcCcC-cEEEEEE
Confidence            6999997543     22 4678999999998 9888754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.67  E-value=0.049  Score=40.13  Aligned_cols=34  Identities=15%  Similarity=0.055  Sum_probs=29.9

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ..++++|+|+|.+|+-.+++++.+|. +|.++.++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            34679999999999999999999999 88888754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.67  E-value=0.038  Score=46.80  Aligned_cols=38  Identities=16%  Similarity=0.248  Sum_probs=33.0

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .....++|+|+|+|..|+.++..++..|. +|++++.++
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            34566789999999999999999999999 999998754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.63  E-value=0.23  Score=34.76  Aligned_cols=73  Identities=15%  Similarity=0.265  Sum_probs=52.5

Q ss_pred             CCCCCCEEEEECCChHHHHH-HHHHHHcCCCeEEEEcCCc-chHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          193 KVEKGSSVAVFGLGAVGLGV-MDRARIQGAAKIIGIDKNP-CRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~-~~la~~~G~~~Vi~~~~~~-~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      .++..+++-++|-|++|..+ +++++..|+ +|...|... ...+.+++.|......+..   ...          .++|
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~---~~i----------~~~d   69 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHAE---EHI----------EGAS   69 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCCG---GGG----------TTCS
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCcc---ccC----------CCCC
Confidence            35667889999998888776 899999999 999999864 3445667788865544432   211          2579


Q ss_pred             EEEEcCCCh
Q 043260          271 YGFECTGVA  279 (332)
Q Consensus       271 ~vid~~g~~  279 (332)
                      +|+-+.+-+
T Consensus        70 ~vV~S~AI~   78 (96)
T d1p3da1          70 VVVVSSAIK   78 (96)
T ss_dssp             EEEECTTSC
T ss_pred             EEEECCCcC
Confidence            998877754

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=93.62  E-value=0.36  Score=37.52  Aligned_cols=99  Identities=22%  Similarity=0.294  Sum_probs=62.0

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEc-CCc-chHHHHHHcCCCeeeCCCCCCCchHHHH----------HHHhcCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGID-KNP-CRKDKGEAFGMTDFINPDDEPNKSISEL----------VKEMTHG  266 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~-~~~-~~~~~~~~lga~~v~~~~~~~~~~~~~~----------~~~~~~~  266 (332)
                      +|.|.|-|-+|..+.+++...+--+++.+. .++ .....+.+++.+......+    .....          ..++.  
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~v~g~~~~~~--   76 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPE----RVKLFEKAGIEVAGTVDDML--   76 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGG----GHHHHHHTTCCCCEEHHHHH--
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccc----cceeecccCcccCCChhHhh--
Confidence            688999999999999988766522566543 222 2334555666554332221    11110          01111  


Q ss_pred             CCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          267 TGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       267 ~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .++|+|+||+|.-.....+-..+..+ -+.++.+.+..
T Consensus        77 ~~vDvViEcTG~f~~~~~~~~hl~~G-~K~vi~~~~~~  113 (171)
T d1cf2o1          77 DEADIVIDCTPEGIGAKNLKMYKEKG-IKAIFQGGEKH  113 (171)
T ss_dssp             HTCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTSCH
T ss_pred             cCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEECCCCc
Confidence            25999999999876667788888887 78888776653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.57  E-value=0.21  Score=39.05  Aligned_cols=86  Identities=9%  Similarity=-0.043  Sum_probs=51.1

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHHcCCCee----eCCCC-CCCchHHHHHHHhcCCCCcc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR--KDKGEAFGMTDF----INPDD-EPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~--~~~~~~lga~~v----~~~~~-~~~~~~~~~~~~~~~~~g~d  270 (332)
                      .+|.|+|+|..|.+.+..+...|. +|.+..+..++  .+...+..-...    +.... ....+..+.+      ..+|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~ad   73 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL------ENAE   73 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH------TTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHH------hccc
Confidence            468999999999999998888888 99998774333  233322111000    00000 0113333333      2589


Q ss_pred             EEEEcCCChHHHHHHHHHhcc
Q 043260          271 YGFECTGVASLISEALEATKL  291 (332)
Q Consensus       271 ~vid~~g~~~~~~~~~~~l~~  291 (332)
                      +||.++... .+...++.+.+
T Consensus        74 ~Ii~avps~-~~~~~~~~l~~   93 (180)
T d1txga2          74 VVLLGVSTD-GVLPVMSRILP   93 (180)
T ss_dssp             EEEECSCGG-GHHHHHHHHTT
T ss_pred             hhhcccchh-hhHHHHHhhcc
Confidence            999999985 55555555444

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.54  E-value=0.068  Score=46.35  Aligned_cols=96  Identities=20%  Similarity=0.158  Sum_probs=55.1

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch---HHHHHHcCCC---eeeCCCCCCCchHHHHHHHh
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR---KDKGEAFGMT---DFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~---~~~~~~lga~---~v~~~~~~~~~~~~~~~~~~  263 (332)
                      +.....+|++||-+|+|. |.++..++ ..|+.+|++++.++.-   ++..++.+..   .++..+.   .++      .
T Consensus        32 ~~~~~~~~~~VLDlGcGt-G~ls~~aa-~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~---~~l------~  100 (328)
T d1g6q1_          32 QNKDLFKDKIVLDVGCGT-GILSMFAA-KHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKL---EDV------H  100 (328)
T ss_dssp             HHHHHHTTCEEEEETCTT-SHHHHHHH-HTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT---TTS------C
T ss_pred             hccccCCcCEEEEeCCCC-CHHHHHHH-HhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeeh---hhc------c
Confidence            334556899999999975 66655444 4787799999988521   1223444532   2222221   111      1


Q ss_pred             cCCCCccEEEEcCCC--------h-HHHHHHHHHhccCCcEEE
Q 043260          264 THGTGVDYGFECTGV--------A-SLISEALEATKLGKGKVM  297 (332)
Q Consensus       264 ~~~~g~d~vid~~g~--------~-~~~~~~~~~l~~~~G~~v  297 (332)
                      .....+|+|+...-.        . ..+...-+.|+|+ |+++
T Consensus       101 ~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg-G~ii  142 (328)
T d1g6q1_         101 LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG-GLIF  142 (328)
T ss_dssp             CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             CcccceeEEEEEecceeeccchhHHHHHHHHHhccCCC-eEEE
Confidence            123479999873221        1 2344445789998 8774

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.52  E-value=0.16  Score=43.95  Aligned_cols=38  Identities=18%  Similarity=0.142  Sum_probs=30.7

Q ss_pred             CCEEEEECC---ChHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 043260          197 GSSVAVFGL---GAVGLGVMDRARIQGAAKIIGIDKNPCRKD  235 (332)
Q Consensus       197 g~~vlV~G~---g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~  235 (332)
                      ++..||+|+   .++|.+.++.+...|+ +|+++.++.+...
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA-~V~i~~~~~~~~~   42 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVYNI   42 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECGGGHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCC-EEEEEeCchhhhh
Confidence            467788995   3899999999999999 9999887665443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.49  E-value=0.091  Score=45.30  Aligned_cols=103  Identities=15%  Similarity=0.026  Sum_probs=65.7

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC--eeeCCCCC--CCchHHHHHHHhcCCCCcc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT--DFINPDDE--PNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~--~v~~~~~~--~~~~~~~~~~~~~~~~g~d  270 (332)
                      ...++|||+|.|. |..+-.+++.....+|.+++.+++-.+.++++-..  ..++....  ...+..+.+++ + ...+|
T Consensus       105 ~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~-~~~yD  181 (312)
T d2b2ca1         105 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-H-KNEFD  181 (312)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-C-TTCEE
T ss_pred             CCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-C-CCCCC
Confidence            4557899998866 45555667766666999999999999988874211  00000000  11334556655 3 34799


Q ss_pred             EEEEcCCCh----------HHHHHHHHHhccCCcEEEEEcC
Q 043260          271 YGFECTGVA----------SLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       271 ~vid~~g~~----------~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      +||--...+          +.+..+.++|+++ |.++.-+.
T Consensus       182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~-Gi~v~q~~  221 (312)
T d2b2ca1         182 VIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQGE  221 (312)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEE-EEEEEECC
T ss_pred             EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCC-cEEEEecC
Confidence            999643322          3577888999998 99887653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.44  E-value=0.69  Score=35.40  Aligned_cols=96  Identities=9%  Similarity=0.105  Sum_probs=61.1

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHH-HHHHc-------CCCeeeCCCCCCCchHHHHHHHhcC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKD-KGEAF-------GMTDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~-~~~~l-------ga~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      .+..+|.|+|+|.+|..++..+...|. .+++++|.++++.+ .+..+       +...++...+     +    .+   
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-----~----~~---   85 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-----Y----SV---   85 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-----G----GG---
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-----h----hh---
Confidence            455789999999999999999998884 68999999876653 22111       2222222211     1    11   


Q ss_pred             CCCccEEEEcCCCh---------------HHHH---HHHHHhccCCcEEEEEcCCC
Q 043260          266 GTGVDYGFECTGVA---------------SLIS---EALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       266 ~~g~d~vid~~g~~---------------~~~~---~~~~~l~~~~G~~v~~G~~~  303 (332)
                      -.+.|+|+-++|.+               ..+.   ..+.-..+. +.++.+.++-
T Consensus        86 ~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~-aiiivvtNPv  140 (160)
T d1i0za1          86 TANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD-CIIIVVSNPV  140 (160)
T ss_dssp             GTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEECSSSH
T ss_pred             cccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEeCCch
Confidence            13689999988864               1222   222333555 8888888765

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.41  E-value=0.042  Score=40.58  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=32.6

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      +..++++|+|+|.+|+-++++++.+|. +|.++.+++.
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~   59 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASE   59 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccc
Confidence            345789999999999999999999998 9999987654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.05  Score=40.23  Aligned_cols=34  Identities=12%  Similarity=0.160  Sum_probs=30.9

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .++++|+|+|.+|+-++..++.+|. +|.++.+++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            3789999999999999999999999 999998764

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.39  E-value=0.082  Score=41.45  Aligned_cols=48  Identities=15%  Similarity=0.147  Sum_probs=36.2

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG  237 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~  237 (332)
                      +.+...--++++|||+|+|+++.+++..+..  .++|.++.|+.+|.+.+
T Consensus         9 l~~~~~~~~~k~vlIlGaGG~arai~~aL~~--~~~i~I~nR~~~ka~~l   56 (177)
T d1nvta1           9 LEEEIGRVKDKNIVIYGAGGAARAVAFELAK--DNNIIIANRTVEKAEAL   56 (177)
T ss_dssp             HHHHHCCCCSCEEEEECCSHHHHHHHHHHTS--SSEEEEECSSHHHHHHH
T ss_pred             HHHhCCCcCCCEEEEECCcHHHHHHHHHHcc--ccceeeehhhhhHHHHH
Confidence            4343444588999999999999988766643  44899999998887643

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=93.39  E-value=0.1  Score=43.75  Aligned_cols=31  Identities=13%  Similarity=0.139  Sum_probs=26.0

Q ss_pred             EEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          200 VAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       200 vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      +||+|+ +++|.+.++.+...|+ +|++++++.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~   36 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRS   36 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            466788 9999999999999999 888876544

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.37  E-value=0.34  Score=37.94  Aligned_cols=98  Identities=18%  Similarity=0.207  Sum_probs=57.8

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEc-CCcch-HHHHHHcCCCeeeCCCC---------CCCchHHHHHHHhcCCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGID-KNPCR-KDKGEAFGMTDFINPDD---------EPNKSISELVKEMTHGT  267 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~-~~~~~-~~~~~~lga~~v~~~~~---------~~~~~~~~~~~~~~~~~  267 (332)
                      +|.|.|-|-+|..+++.+....--+|+++. ..+.. ...+...+.......+.         ....++....      .
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~------~   76 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI------K   76 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH------H
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh------h
Confidence            588999999999999998876522677653 33332 23333333322211111         0001111110      1


Q ss_pred             CccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          268 GVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       268 g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ++|+||||+|.......+-..+..+ -++++.+...
T Consensus        77 ~vDiViecTG~f~~~e~a~~hl~~G-~KvIi~~~~~  111 (178)
T d1b7go1          77 TSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGGEK  111 (178)
T ss_dssp             HCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTSC
T ss_pred             cCCEEEECCCCcCCHHHHHHHHHcC-CEEEEECCCC
Confidence            5899999999866667777778765 6777776544

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.36  E-value=0.15  Score=40.37  Aligned_cols=39  Identities=31%  Similarity=0.394  Sum_probs=34.1

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRK  234 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~  234 (332)
                      -.|.++.|+|.|.+|...+++++.+|. +|++.++...+.
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~   80 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPA   80 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCHH
T ss_pred             ccceeeeeccccchhHHHHHHhhhccc-eEEeecCCCChh
Confidence            357899999999999999999999999 999999766543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=93.35  E-value=0.21  Score=40.81  Aligned_cols=106  Identities=17%  Similarity=0.208  Sum_probs=69.2

Q ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHhc-
Q 043260          191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEMT-  264 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~~-  264 (332)
                      ..+....++||=+|.+. |..++.+++.+. -.+|+.++.+++..+.+++    .|.+.-+....   .+..+.+.++. 
T Consensus        54 L~~~~~~k~iLEiGT~~-GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~---g~a~~~L~~l~~  129 (227)
T d1susa1          54 LLKLINAKNTMEIGVYT-GYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE---GPALPVLDEMIK  129 (227)
T ss_dssp             HHHHHTCCEEEEECCGG-GHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHH
T ss_pred             HHHhcCCCcEEEecchh-hhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee---hHHHHHHHHHHh
Confidence            34455678899999854 788888888764 2499999999988776644    56643332222   23333444431 


Q ss_pred             ---CCCCccEEEEcCCCh---HHHHHHHHHhccCCcEEEEEcC
Q 043260          265 ---HGTGVDYGFECTGVA---SLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       265 ---~~~g~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                         ....||.||--..-.   .-+..+++.|+++ |.++.=-.
T Consensus       130 ~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~g-Giii~DNv  171 (227)
T d1susa1         130 DEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDNT  171 (227)
T ss_dssp             CGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEETT
T ss_pred             ccccCCceeEEEeccchhhhHHHHHHHHhhcCCC-cEEEEccC
Confidence               122699998744432   4578999999998 88876543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=93.34  E-value=0.11  Score=41.34  Aligned_cols=41  Identities=17%  Similarity=0.234  Sum_probs=34.9

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG  237 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~  237 (332)
                      .+.++.|+|.|.+|...+++++.+|. +|+..++........
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~   83 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVE   83 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHH
T ss_pred             cccceeeccccccchhhhhhhhccCc-eEEEEeecccccccc
Confidence            57899999999999999999999999 999999865444433

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.30  E-value=0.071  Score=39.45  Aligned_cols=36  Identities=17%  Similarity=0.238  Sum_probs=31.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      +..++++|+|+|.+|+-++++++.+|. +|.++.+.+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence            445889999999999999999999999 999997654

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=93.30  E-value=0.69  Score=35.00  Aligned_cols=98  Identities=19%  Similarity=0.256  Sum_probs=65.7

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHc--CCCeEEEEcCCcc--hH-HHHHHcCCCeeeCCCCCCCchHHHHHHHhcC------
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQ--GAAKIIGIDKNPC--RK-DKGEAFGMTDFINPDDEPNKSISELVKEMTH------  265 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~--G~~~Vi~~~~~~~--~~-~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~------  265 (332)
                      ++|.|.|+ |.+|..+.++.+..  .+ +|+++.....  ++ +.++++.+..+...++   ... +.+.+...      
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~---~~~-~~l~~~~~~~~~~v   77 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADP---SLY-NDLKEALAGSSVEA   77 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCG---GGH-HHHHHHTTTCSSEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccH---HHH-HHHHHHhhhccccc
Confidence            68999999 99999999999876  46 6777655443  22 3567788887754443   222 22221111      


Q ss_pred             -----------CCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          266 -----------GTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       266 -----------~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                                 ...+|+|+.+..+...+...+..++.+  .-+.+.+-
T Consensus        78 ~~g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~g--k~iaLANK  123 (150)
T d1r0ka2          78 AAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKG--KTVALANK  123 (150)
T ss_dssp             EESHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTT--SEEEECCS
T ss_pred             ccCccchheecccccceeeeecCchhHHHHHHHHHhcC--CEEEEecc
Confidence                       125899999988777889999999874  44555543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.29  E-value=0.038  Score=44.72  Aligned_cols=33  Identities=21%  Similarity=0.397  Sum_probs=29.1

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      +|+|+|+|..|+.++..++..|..+|++++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            489999999999999999999975799998764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.23  E-value=0.063  Score=43.95  Aligned_cols=39  Identities=18%  Similarity=0.163  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      ..+.+++|+|+|+|+.|+.++..++..|. +|++++.+++
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeeccc
Confidence            34567899999999999999999999999 9999987553

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.14  E-value=0.093  Score=38.49  Aligned_cols=67  Identities=22%  Similarity=0.415  Sum_probs=46.9

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      .++++++++|+|+|.+|.-++..++..|. +|.++++++.=+      .     ..-+   ....+.+++....+|+++.
T Consensus        26 ~~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~~l------~-----~~~~---~~~~~~~~~~l~~~GV~i~   90 (121)
T d1d7ya2          26 GLRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPRLM------S-----RAAP---ATLADFVARYHAAQGVDLR   90 (121)
T ss_dssp             HCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSTT------T-----TTSC---HHHHHHHHHHHHTTTCEEE
T ss_pred             hhhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccccc------c-----ccCC---HHHHHHHHHHHHHCCcEEE
Confidence            45678999999999999999999999998 999998765321      0     0111   4445555554445567766


Q ss_pred             EE
Q 043260          273 FE  274 (332)
Q Consensus       273 id  274 (332)
                      .+
T Consensus        91 ~~   92 (121)
T d1d7ya2          91 FE   92 (121)
T ss_dssp             ES
T ss_pred             eC
Confidence            54

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=93.13  E-value=0.17  Score=41.18  Aligned_cols=90  Identities=16%  Similarity=0.189  Sum_probs=59.1

Q ss_pred             EEEEECCChHHHH-HHHHHHHc-CCCeEE-EEcCCcchHH-HHHHcCCC--eeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          199 SVAVFGLGAVGLG-VMDRARIQ-GAAKII-GIDKNPCRKD-KGEAFGMT--DFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       199 ~vlV~G~g~vG~~-~~~la~~~-G~~~Vi-~~~~~~~~~~-~~~~lga~--~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      +|.|+|+|.+|.. .+...+.. +. +|+ +++++.++.+ .++++|.+  .+..+.+         +.++.....+|+|
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d---------~~ell~~~~iD~V  104 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN---------FDKIAKDPKIDAV  104 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTTCCGGGEECSSS---------GGGGGGCTTCCEE
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhccccccccccCc---------hhhhcccccceee
Confidence            6789999999863 44444444 66 666 5677777765 55667753  2333332         2333344578999


Q ss_pred             EEcCCChHHHHHHHHHhccCCcEEEEEc
Q 043260          273 FECTGVASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       273 id~~g~~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      +-++....+...+.+++..  |.=+++-
T Consensus       105 ~I~tp~~~H~~~~~~al~~--gk~v~~E  130 (221)
T d1h6da1         105 YIILPNSLHAEFAIRAFKA--GKHVMCE  130 (221)
T ss_dssp             EECSCGGGHHHHHHHHHHT--TCEEEEC
T ss_pred             eeccchhhhhhHHHHhhhc--chhhhcC
Confidence            9999988788888888876  4555554

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=93.11  E-value=0.06  Score=43.84  Aligned_cols=96  Identities=8%  Similarity=-0.019  Sum_probs=60.9

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC--eeeCCCCCCCchHHHHHHHhcCCC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT--DFINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~--~v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      ...+..++++||=+|+|. |..+..+++ .|. +|+++|.+++..+.+++...+  .++....          .+.....
T Consensus        14 ~~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~----------~~~~~~~   80 (225)
T d2p7ia1          14 AFTPFFRPGNLLELGSFK-GDFTSRLQE-HFN-DITCVEASEEAISHAQGRLKDGITYIHSRF----------EDAQLPR   80 (225)
T ss_dssp             HHGGGCCSSCEEEESCTT-SHHHHHHTT-TCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCG----------GGCCCSS
T ss_pred             HhhhhCCCCcEEEEeCCC-cHHHHHHHH-cCC-eEEEEeCcHHHhhhhhcccccccccccccc----------ccccccc
Confidence            334455677899999976 666666654 577 899999999999888765333  2222211          1222234


Q ss_pred             CccEEEEcC-----CCh-HHHHHHH-HHhccCCcEEEEE
Q 043260          268 GVDYGFECT-----GVA-SLISEAL-EATKLGKGKVMAI  299 (332)
Q Consensus       268 g~d~vid~~-----g~~-~~~~~~~-~~l~~~~G~~v~~  299 (332)
                      .||+|+..-     .++ ..+..+. ++|+++ |.+++.
T Consensus        81 ~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~g-G~l~i~  118 (225)
T d2p7ia1          81 RYDNIVLTHVLEHIDDPVALLKRINDDWLAEG-GRLFLV  118 (225)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHTTEEEE-EEEEEE
T ss_pred             ccccccccceeEecCCHHHHHHHHHHHhcCCC-ceEEEE
Confidence            799998632     222 2355665 578897 887763

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.02  E-value=0.067  Score=43.63  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=31.0

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      +.-++|+|+|+|..|++++..++..|. +|.++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            445689999999999999999999999 99999864

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.01  E-value=0.07  Score=44.35  Aligned_cols=33  Identities=15%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .+|||+|+ |-+|..++..++..|. +|+.+++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV-EVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEeechh
Confidence            47999998 9999999999999999 999998754

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=92.99  E-value=0.53  Score=36.36  Aligned_cols=97  Identities=20%  Similarity=0.226  Sum_probs=58.4

Q ss_pred             hCCCCCCEEEEECC--ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCC-eeeCCCCCCCchHHHHHHHhc
Q 043260          192 FKVEKGSSVAVFGL--GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMT-DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       192 ~~~~~g~~vlV~G~--g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~-~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      .++.+|.+||=.++  |.+|+   . |...|+ +++.+|.+++..+.++    .+|.. .+...+.   +.+..... . 
T Consensus        37 ~~~~~g~~vLDl~~G~G~~~i---~-a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~---d~~~~~~~-~-  106 (171)
T d1ws6a1          37 LRYPRRGRFLDPFAGSGAVGL---E-AASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPV---EVFLPEAK-A-  106 (171)
T ss_dssp             HHCTTCCEEEEETCSSCHHHH---H-HHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH---HHHHHHHH-H-
T ss_pred             ccccCCCeEEEeccccchhhh---h-hhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeeh---hccccccc-c-
Confidence            35688899988865  55554   3 334688 8999999998887664    35653 5555443   33322222 2 


Q ss_pred             CCCCccEEEEcC----CChHHHHHHHH--HhccCCcEEEEE
Q 043260          265 HGTGVDYGFECT----GVASLISEALE--ATKLGKGKVMAI  299 (332)
Q Consensus       265 ~~~g~d~vid~~----g~~~~~~~~~~--~l~~~~G~~v~~  299 (332)
                      .+..||+||-..    +....+..+++  .++++ |.+++-
T Consensus       107 ~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~-g~ivie  146 (171)
T d1ws6a1         107 QGERFTVAFMAPPYAMDLAALFGELLASGLVEAG-GLYVLQ  146 (171)
T ss_dssp             TTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEE-EEEEEE
T ss_pred             cCCccceeEEccccccCHHHHHHHHHHcCCcCCC-eEEEEE
Confidence            234699998633    33344554443  47776 766643

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.98  E-value=0.068  Score=45.89  Aligned_cols=32  Identities=16%  Similarity=0.220  Sum_probs=29.1

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      +++||+|+ |-+|..++..+...|. +|+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECC
Confidence            57899998 9999999999999999 99999974

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.98  E-value=0.13  Score=38.95  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=30.5

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      -.|++|||+|+|.+|..-+..+...|+ +|++++.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            468999999999999999999999999 8998854

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=92.97  E-value=0.037  Score=42.25  Aligned_cols=85  Identities=8%  Similarity=-0.058  Sum_probs=53.3

Q ss_pred             EEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCChH
Q 043260          201 AVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGVAS  280 (332)
Q Consensus       201 lV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~  280 (332)
                      -++|+|.+|.+.++.++..+. .+.+.+|+.++.+.+.+.+.....+..+            .  -...|+||-|+.. +
T Consensus         3 gfIG~G~mg~~l~~~L~~~~~-~~~v~~R~~~~~~~l~~~~~~~~~~~~~------------~--~~~~DiVil~v~d-~   66 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKDRYE-IGYILSRSIDRARNLAEVYGGKAATLEK------------H--PELNGVVFVIVPD-R   66 (153)
T ss_dssp             EEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCC------------C--CC---CEEECSCT-T
T ss_pred             EEEeCcHHHHHHHHHHHhCCC-EEEEEeCChhhhcchhhcccccccchhh------------h--hccCcEEEEeccc-h
Confidence            468999999998887765433 4457889999988776665543333222            1  1247999999987 4


Q ss_pred             HHHHHHHHhccCCcEEEEEcC
Q 043260          281 LISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       281 ~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      .+....+.+...+..++.+..
T Consensus        67 ~i~~v~~~l~~~~~ivi~~s~   87 (153)
T d2i76a2          67 YIKTVANHLNLGDAVLVHCSG   87 (153)
T ss_dssp             THHHHHTTTCCSSCCEEECCS
T ss_pred             hhhHHHhhhcccceeeeeccc
Confidence            677778888654245555544

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.96  E-value=0.053  Score=44.39  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=31.8

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK  234 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~  234 (332)
                      +++||+|+ +++|.+.++.+...|+ +|+++++++++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~   38 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY-RVVVLDLRREGE   38 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcccc
Confidence            57889998 9999999999999999 999999887653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=92.91  E-value=0.73  Score=34.53  Aligned_cols=93  Identities=20%  Similarity=0.152  Sum_probs=57.9

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHH-HHHc-------CCCeeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDK-GEAF-------GMTDFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~-~~~l-------ga~~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      .+|.|+|+|.+|..++..+...+. .+++++|.++++.+- +..+       +...+....+     +    .+   -.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~-----~----~~---~~d   69 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-----P----EI---CRD   69 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-----G----GG---GTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCC-----H----HH---hhC
Confidence            468899999999999888888774 589999998876541 1111       2222221211     1    11   136


Q ss_pred             ccEEEEcCCCh---------------HHH---HHHHHHhccCCcEEEEEcCCC
Q 043260          269 VDYGFECTGVA---------------SLI---SEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       269 ~d~vid~~g~~---------------~~~---~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .|+|+-+.|.+               ..+   ...+.-.++. +.++.+.++-
T Consensus        70 aDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~-ai~ivvtNPv  121 (143)
T d1llda1          70 ADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPN-AIYMLITNPV  121 (143)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTT-SEEEECCSSH
T ss_pred             CcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCC-eEEEEeCCch
Confidence            89999999864               111   2223344565 8888877664

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.88  E-value=0.099  Score=38.98  Aligned_cols=40  Identities=20%  Similarity=0.229  Sum_probs=34.9

Q ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          192 FKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       192 ~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      ..++++++++|+|+|.+|+-++..++..|. +|.++++.+.
T Consensus        30 ~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~~   69 (133)
T d1q1ra2          30 RQLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAAR   69 (133)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             HhhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeeccc
Confidence            345678999999999999999999999999 9999987653

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=92.86  E-value=0.1  Score=40.52  Aligned_cols=95  Identities=16%  Similarity=0.122  Sum_probs=62.6

Q ss_pred             hcccchhhhHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCc
Q 043260          176 FLSCGYSSGFGAAWKEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNK  254 (332)
Q Consensus       176 ~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~  254 (332)
                      .+||+....+..+.+..---.|++++|+|. ..+|.-+..++...|+ +|+.+.....                      
T Consensus        16 ~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t~----------------------   72 (166)
T d1b0aa1          16 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFTK----------------------   72 (166)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSCS----------------------
T ss_pred             CCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhc-cccccccccc----------------------
Confidence            344444333333322222357999999998 7799999999999998 8888754332                      


Q ss_pred             hHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       255 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      +..+.++      .+|+|+-++|.+..+.  -++++++ ..++.+|..
T Consensus        73 ~l~~~~~------~ADivI~a~G~p~~i~--~~~vk~g-~vvIDvGi~  111 (166)
T d1b0aa1          73 NLRHHVE------NADLLIVAVGKPGFIP--GDWIKEG-AIVIDVGIN  111 (166)
T ss_dssp             CHHHHHH------HCSEEEECSCCTTCBC--TTTSCTT-CEEEECCCE
T ss_pred             hhHHHHh------hhhHhhhhccCccccc--ccccCCC-cEEEecCce
Confidence            2222221      4789999888765443  3467887 888888875

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.78  E-value=0.48  Score=35.25  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=46.0

Q ss_pred             EEEEECC-ChHHHHHHHHHHHc-CCCeEEE-EcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQ-GAAKIIG-IDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~-G~~~Vi~-~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      +|.|.|+ |-+|...++..... ++ +++. +++ .+.......-++|-++|...  ++...+-++... ..+..+|+-+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~~d~-~~~~~~~~~~~~DvvIDFS~--p~~~~~~~~~~~-~~~~~~ViGT   75 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAELDA-GDPLSLLTDGNTEVVIDFTH--PDVVMGNLEFLI-DNGIHAVVGT   75 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTS-EEEEEECT-TCCTHHHHTTTCSEEEECCC--TTTHHHHHHHHH-HTTCEEEECC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEec-CCchhhhccccCCEEEEccc--HHHHHHHHHHHH-hcCCCEEEec
Confidence            5889998 99999988887664 56 5554 443 23333344446777777665  333433333322 2366777777


Q ss_pred             CCCh
Q 043260          276 TGVA  279 (332)
Q Consensus       276 ~g~~  279 (332)
                      +|-.
T Consensus        76 TG~~   79 (135)
T d1yl7a1          76 TGFT   79 (135)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            7753

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.77  E-value=0.1  Score=44.13  Aligned_cols=94  Identities=15%  Similarity=0.103  Sum_probs=61.3

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC-C------------C---eeeCCCCCCCchHHH
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG-M------------T---DFINPDDEPNKSISE  258 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg-a------------~---~v~~~~~~~~~~~~~  258 (332)
                      .+.++|||+|+|. |..+-.+++ ....+|.+++.+++-.+.++++- .            +   .++.      .+..+
T Consensus        71 ~~p~~vLiiG~G~-G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~------~Da~~  142 (276)
T d1mjfa_          71 PKPKRVLVIGGGD-GGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI------GDGFE  142 (276)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE------SCHHH
T ss_pred             CCCceEEEecCCc-hHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE------ChHHH
Confidence            5567899998755 333444455 45558999999998888887632 1            1   2222      23344


Q ss_pred             HHHHhcCCCCccEEEEcCCC----------hHHHHHHHHHhccCCcEEEEEc
Q 043260          259 LVKEMTHGTGVDYGFECTGV----------ASLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       259 ~~~~~~~~~g~d~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      .+++   .+++|+||--...          .+.+..+.+.|+++ |.++.-+
T Consensus       143 ~l~~---~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~-Gv~v~q~  190 (276)
T d1mjfa_         143 FIKN---NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQA  190 (276)
T ss_dssp             HHHH---CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             HHhc---cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC-ceEEEec
Confidence            5543   2479999863322          24578899999998 9888654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=92.75  E-value=0.36  Score=41.43  Aligned_cols=101  Identities=18%  Similarity=0.123  Sum_probs=66.0

Q ss_pred             hCCCCCCEEEEECC--ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCC--C--eeeCCCCCCCchHHHHHH
Q 043260          192 FKVEKGSSVAVFGL--GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGM--T--DFINPDDEPNKSISELVK  261 (332)
Q Consensus       192 ~~~~~g~~vlV~G~--g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga--~--~v~~~~~~~~~~~~~~~~  261 (332)
                      ..+.+|++||-..+  |+.++.    |...|+++|+.+|.++..++++++    .|.  +  .++..      +..+.++
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl~----aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~------d~~~~l~  209 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSVA----AAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM------DVFDYFK  209 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHHH----HHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEES------CHHHHHH
T ss_pred             HHhhCCCceeecCCCCcHHHHH----HHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEc------cHHHHHH
Confidence            46778999998854  665543    234677789999999998887754    232  2  23332      2334444


Q ss_pred             Hh-cCCCCccEEEEcCCC---------------hHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          262 EM-THGTGVDYGFECTGV---------------ASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       262 ~~-~~~~g~d~vid~~g~---------------~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .. ..+..||+||--...               .+.+..++++|+++ |.++......
T Consensus       210 ~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg-G~l~~~scs~  266 (317)
T d2b78a2         210 YARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-GLIIASTNAA  266 (317)
T ss_dssp             HHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-EEEEEEECCT
T ss_pred             HHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCCc
Confidence            32 224579999964331               13567889999998 9999877654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=92.65  E-value=0.23  Score=42.62  Aligned_cols=76  Identities=21%  Similarity=0.166  Sum_probs=49.1

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHHc----CCCeee-CCCCCCCchHHHHHHHhcCCCC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEAF----GMTDFI-NPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~l----ga~~v~-~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ++++|||+|+ |-+|..+++.+...|. +|++++++..+.. +.+..    +...+. |..+  .+.+.+.+.    ...
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d--~~~l~~~~~----~~~   79 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD--QNKLLESIR----EFQ   79 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC--HHHHHHHHH----HHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhhcccCCeEEEeeccC--hHhhhhhhh----hch
Confidence            5799999998 9999999999999999 9999998765432 22221    122221 2222  122222222    235


Q ss_pred             ccEEEEcCCC
Q 043260          269 VDYGFECTGV  278 (332)
Q Consensus       269 ~d~vid~~g~  278 (332)
                      +|+|+.+++.
T Consensus        80 ~~~v~~~aa~   89 (356)
T d1rkxa_          80 PEIVFHMAAQ   89 (356)
T ss_dssp             CSEEEECCSC
T ss_pred             hhhhhhhhcc
Confidence            7999998874

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.63  E-value=0.15  Score=40.77  Aligned_cols=73  Identities=22%  Similarity=0.281  Sum_probs=47.8

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC-CeeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM-TDFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga-~~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      ...++ .|++||=.|+|. |.+++. +...|+++|+.+|.+++..+.+++.-. -.+++.+          +.++ ++ .
T Consensus        43 ~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D----------~~~l-~~-~  107 (197)
T d1ne2a_          43 NDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD----------VSEI-SG-K  107 (197)
T ss_dssp             HHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECC----------GGGC-CC-C
T ss_pred             HcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEEEe----------hhhc-CC-c
Confidence            44454 699999998864 544443 445787789999999999888877433 2344332          1222 23 6


Q ss_pred             ccEEEEcCC
Q 043260          269 VDYGFECTG  277 (332)
Q Consensus       269 ~d~vid~~g  277 (332)
                      ||+||.+..
T Consensus       108 fD~Vi~NPP  116 (197)
T d1ne2a_         108 YDTWIMNPP  116 (197)
T ss_dssp             EEEEEECCC
T ss_pred             ceEEEeCcc
Confidence            999998644

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.078  Score=44.55  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=31.6

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ++..+|+|+|+|..|+.++..++..|. +|++++.++
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~~   38 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARD   38 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            455679999999999999999999999 999998654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.49  E-value=0.07  Score=44.09  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=29.8

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      .|+|+|+|..|++++.+++..|...|.+++++++
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            6899999999999999999999768888887653

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.47  E-value=0.065  Score=45.93  Aligned_cols=97  Identities=13%  Similarity=0.108  Sum_probs=64.6

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCC-------C---eeeCCCCCCCchHHHHHHHhc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGM-------T---DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga-------~---~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      ...++|||+|.|. |..+-.+++..+..+|.+++.+++-.+.+++.-.       +   .++.      .+..+.+++. 
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~------~Da~~~l~~~-  159 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI------ANGAEYVRKF-  159 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHGGGC-
T ss_pred             CCCceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh------hhHHHHHhcC-
Confidence            3457899998755 4555566676666689999999998888876421       1   2222      3344455442 


Q ss_pred             CCCCccEEEEcCC-----------ChHHHHHHHHHhccCCcEEEEEcC
Q 043260          265 HGTGVDYGFECTG-----------VASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       265 ~~~g~d~vid~~g-----------~~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                       ...+|+||--..           +.+.+..+.+.|+++ |.++.-..
T Consensus       160 -~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~-Gi~v~q~~  205 (295)
T d1inla_         160 -KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAETE  205 (295)
T ss_dssp             -SSCEEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             -CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCC-cEEEEecC
Confidence             347999985322           224678999999998 98887543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.18  Score=42.79  Aligned_cols=96  Identities=14%  Similarity=0.077  Sum_probs=64.3

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC---------CC-eeeCCCCCCCchHHHHHHHhc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG---------MT-DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg---------a~-~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      ...++|||+|.|. |..+-.+++..+..+|++++.+++-.+.+++.-         .. .++.      .+..+.+++ +
T Consensus        77 ~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~------~Da~~~l~~-~  148 (285)
T d2o07a1          77 PNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV------GDGFEFMKQ-N  148 (285)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHT-C
T ss_pred             cCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE------ccHHHHHhc-C
Confidence            4557899998765 555566777666679999999999888887642         11 2221      234445554 2


Q ss_pred             CCCCccEEEEcCCCh----------HHHHHHHHHhccCCcEEEEEc
Q 043260          265 HGTGVDYGFECTGVA----------SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       265 ~~~g~d~vid~~g~~----------~~~~~~~~~l~~~~G~~v~~G  300 (332)
                       ...+|+||--...+          +.+..+.+.|+++ |.++.-.
T Consensus       149 -~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~  192 (285)
T d2o07a1         149 -QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQG  192 (285)
T ss_dssp             -SSCEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEE
T ss_pred             -CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCC-CeEEEec
Confidence             34799998643321          3578888999998 9888754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.42  E-value=0.05  Score=45.74  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      .|+|+|+|+.|++++..++..|. +|++++++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            48999999999999999999999 9999998753

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=92.41  E-value=0.13  Score=42.51  Aligned_cols=95  Identities=17%  Similarity=0.207  Sum_probs=60.5

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH----cCCC-ee--eCCCCCCCchHHHHHHHhcCC
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA----FGMT-DF--INPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~----lga~-~v--~~~~~~~~~~~~~~~~~~~~~  266 (332)
                      .+++++||=+|+|. |..+..+++. |..+|+++|.+++-++.+++    .+.. .+  +..+.   .     -.....+
T Consensus        22 ~~~~~~VLDlGCG~-G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~---~-----~~~~~~~   91 (252)
T d1ri5a_          22 TKRGDSVLDLGCGK-GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS---Y-----GRHMDLG   91 (252)
T ss_dssp             CCTTCEEEEETCTT-TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT---T-----TSCCCCS
T ss_pred             CCCcCEEEEecccC-cHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcch---h-----hhccccc
Confidence            57899999999976 5555666654 55589999999998877754    3322 22  11110   0     0011123


Q ss_pred             CCccEEEEcCCCh----------HHHHHHHHHhccCCcEEEEE
Q 043260          267 TGVDYGFECTGVA----------SLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       267 ~g~d~vid~~g~~----------~~~~~~~~~l~~~~G~~v~~  299 (332)
                      ..||+|+......          ..+..+.+.|+++ |.++..
T Consensus        92 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g-G~~i~~  133 (252)
T d1ri5a_          92 KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG-GYFIMT  133 (252)
T ss_dssp             SCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred             ccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCC-CEEEEE
Confidence            4699998754421          2456777889998 998764

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=92.37  E-value=0.76  Score=34.81  Aligned_cols=98  Identities=17%  Similarity=0.246  Sum_probs=66.0

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcC--CCeEEEEcCCc--chH-HHHHHcCCCeeeCCCCCCCchHH---------------
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQG--AAKIIGIDKNP--CRK-DKGEAFGMTDFINPDDEPNKSIS---------------  257 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G--~~~Vi~~~~~~--~~~-~~~~~lga~~v~~~~~~~~~~~~---------------  257 (332)
                      ++.|.|+ |.+|..++.+.+..-  + +|+......  +.+ +.++++....++..++   ....               
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~---~~~~~l~~~l~~~~~~~~~   78 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDDE---ASAKLLKTMLQQQGSRTEV   78 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESSH---HHHHHHHHHHHHTTCCCEE
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhcccccccH---HHHHHHHHHhhhhcccccc
Confidence            6889998 999999999999873  5 666655433  232 3557788877765543   2211               


Q ss_pred             ----HHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          258 ----ELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       258 ----~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                          +.+.++.....+|+|+.+..+-..+...+..++.  |.-+.+.+-
T Consensus        79 ~~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~--gk~iaLANK  125 (151)
T d1q0qa2          79 LSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRA--GKTILLANK  125 (151)
T ss_dssp             EESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHT--TCEEEECCH
T ss_pred             ccChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhc--CCeEEEEcc
Confidence                1122222334689999999888889999999987  455555554

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.21  E-value=0.14  Score=42.86  Aligned_cols=106  Identities=10%  Similarity=-0.037  Sum_probs=60.0

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHH----c-CC-CeEEEEcCCcchHHHHHHc-CC----C-eeeCCCCCCCchHHHHHH
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARI----Q-GA-AKIIGIDKNPCRKDKGEAF-GM----T-DFINPDDEPNKSISELVK  261 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~----~-G~-~~Vi~~~~~~~~~~~~~~l-ga----~-~v~~~~~~~~~~~~~~~~  261 (332)
                      .++..+||=+|+|. |.....+++.    . +. .+++++|.++.-++.+++. .-    . ..++......+++.....
T Consensus        38 ~~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          38 TKSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             TCSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence            34455799999855 4444444432    2 21 1578899998887776553 11    1 111212100122222222


Q ss_pred             HhcCCCCccEEEEcCC-----C-hHHHHHHHHHhccCCcEEEEEcC
Q 043260          262 EMTHGTGVDYGFECTG-----V-ASLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      .......||+|+..-.     . ..++..+.+.|+|+ |.+++.-.
T Consensus       117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg-G~l~i~~~  161 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN-AKMLIIVV  161 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCC-CEEEEEEe
Confidence            2233457999998443     2 25788999999998 98877654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.12  E-value=0.84  Score=34.15  Aligned_cols=96  Identities=11%  Similarity=0.035  Sum_probs=58.9

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHH---cCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD-KGEA---FGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~-~~~~---lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      .+.++|+|.|.+|..+++.+...|. +|++++.++++.. .+++   .|.. ++..+.   .+ .+.+++. +-..+|.|
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~~~-vi~Gd~---~d-~~~L~~a-~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNAD-VIPGDS---ND-SSVLKKA-GIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCE-EEESCT---TS-HHHHHHH-TTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCCcE-EEEccC---cc-hHHHHHh-ccccCCEE
Confidence            3568999999999999999999998 8999988876432 3322   3443 332222   11 2223332 33368999


Q ss_pred             EEcCCChHH---HHHHHHHhccCCcEEEEEc
Q 043260          273 FECTGVASL---ISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       273 id~~g~~~~---~~~~~~~l~~~~G~~v~~G  300 (332)
                      +-++++...   +....+.+.+. -+++..-
T Consensus        76 i~~~~~d~~n~~~~~~~r~~~~~-~~iia~~  105 (153)
T d1id1a_          76 LALSDNDADNAFVVLSAKDMSSD-VKTVLAV  105 (153)
T ss_dssp             EECSSCHHHHHHHHHHHHHHTSS-SCEEEEC
T ss_pred             EEccccHHHHHHHHHHHHHhCCC-CceEEEE
Confidence            999987532   12334445554 5555443

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=92.12  E-value=0.099  Score=45.10  Aligned_cols=95  Identities=12%  Similarity=0.092  Sum_probs=63.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc------CC--C---eeeCCCCCCCchHHHHHHHh
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF------GM--T---DFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l------ga--~---~v~~~~~~~~~~~~~~~~~~  263 (332)
                      ...++|||+|.|. |..+-.+++.....+|.+++.+++-.+.+++.      ++  +   .++.      .+..+.+++.
T Consensus        76 ~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~------~Da~~~l~~~  148 (312)
T d1uira_          76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI------DDARAYLERT  148 (312)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE------SCHHHHHHHC
T ss_pred             CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEE------chHHHHhhhc
Confidence            4567899998865 55566666666666999999999988877663      11  1   2222      3445556543


Q ss_pred             cCCCCccEEEEcC----C---------ChHHHHHHHHHhccCCcEEEEE
Q 043260          264 THGTGVDYGFECT----G---------VASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       264 ~~~~g~d~vid~~----g---------~~~~~~~~~~~l~~~~G~~v~~  299 (332)
                        +..+|+||--.    +         +.+.+..+.+.|+++ |.++.-
T Consensus       149 --~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gvlv~~  194 (312)
T d1uira_         149 --EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG-GVMGMQ  194 (312)
T ss_dssp             --CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE-EEEEEE
T ss_pred             --CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC-ceEEEe
Confidence              34799998532    1         124578899999998 988754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=92.11  E-value=1.2  Score=33.11  Aligned_cols=37  Identities=19%  Similarity=0.209  Sum_probs=31.5

Q ss_pred             EEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHH
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKD  235 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~  235 (332)
                      +|.|+|+|.+|...+..+...+. .+++.+|.++++.+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~   39 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQ   39 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccch
Confidence            68899999999998888888773 68999999987755

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=91.98  E-value=0.57  Score=36.24  Aligned_cols=73  Identities=14%  Similarity=0.234  Sum_probs=42.8

Q ss_pred             CCCEEEEECCChHHHHHH---HHHHH--cCCCeEEEEcCCcchHHHH--------HHcCCCeeeCCCCCCCchHHHHHHH
Q 043260          196 KGSSVAVFGLGAVGLGVM---DRARI--QGAAKIIGIDKNPCRKDKG--------EAFGMTDFINPDDEPNKSISELVKE  262 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~---~la~~--~G~~~Vi~~~~~~~~~~~~--------~~lga~~v~~~~~~~~~~~~~~~~~  262 (332)
                      |..++.|+|+|.+|....   .+++.  +...+++.+|.++++++..        ..++...-+...    .+..+++  
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~----td~~eaL--   74 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT----MNLDDVI--   74 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE----SCHHHHH--
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe----CChhhcc--
Confidence            567899999998885422   23322  2224999999999887532        234443222111    2233333  


Q ss_pred             hcCCCCccEEEEcCCC
Q 043260          263 MTHGTGVDYGFECTGV  278 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~  278 (332)
                          .++|+|+.+.+.
T Consensus        75 ----~dad~Vv~~~~~   86 (171)
T d1obba1          75 ----IDADFVINTAMV   86 (171)
T ss_dssp             ----TTCSEEEECCCT
T ss_pred             ----cCCCeEeeeccc
Confidence                268999987654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.97  E-value=0.83  Score=33.99  Aligned_cols=92  Identities=18%  Similarity=0.254  Sum_probs=56.3

Q ss_pred             EEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHHH-HHH----cC--CCeeeCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKDK-GEA----FG--MTDFINPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~-~~~----lg--a~~v~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      +|.|+|+|.+|..++..+...+. .++..+|.++++.+. +..    ..  ....+...+     +    .++   .+.|
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~-----~----~~~---~~ad   69 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-----Y----ADL---KGSD   69 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-----G----GGG---TTCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc-----H----HHh---cCCC
Confidence            68899999999988877776663 589999998876542 111    11  111111111     1    111   3689


Q ss_pred             EEEEcCCCh--------H-------H---HHHHHHHhccCCcEEEEEcCCC
Q 043260          271 YGFECTGVA--------S-------L---ISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       271 ~vid~~g~~--------~-------~---~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +|+-++|.+        +       .   +-..+.-.+|+ +.++.+.++-
T Consensus        70 ivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~-aivivvtNPv  119 (140)
T d1a5za1          70 VVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPD-SIVIVVTNPV  119 (140)
T ss_dssp             EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTT-CEEEECSSSH
T ss_pred             EEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCC-cEEEEeCCcH
Confidence            999998863        1       1   22334445666 8888877664

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.19  Score=43.04  Aligned_cols=74  Identities=12%  Similarity=0.094  Sum_probs=45.9

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-CCCeee-CCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-GMTDFI-NPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-ga~~v~-~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      .+|||+|+ |-+|..+++.+...|.-+|+++++...+.....+. ....+. |..+  ..++.+.+.     .++|+||.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~--~~~~~~~~~-----~~~d~Vih   73 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI--HSEWIEYHV-----KKCDVVLP   73 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTT--CSHHHHHHH-----HHCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCC--hHHHHHHHH-----hCCCcccc
Confidence            37999998 99999999888888843899998765554433222 122221 2111  133333222     25899999


Q ss_pred             cCCC
Q 043260          275 CTGV  278 (332)
Q Consensus       275 ~~g~  278 (332)
                      +++.
T Consensus        74 ~a~~   77 (342)
T d2blla1          74 LVAI   77 (342)
T ss_dssp             CBCC
T ss_pred             cccc
Confidence            8874

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.91  E-value=0.36  Score=41.47  Aligned_cols=104  Identities=19%  Similarity=0.195  Sum_probs=71.3

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHH-cCCCeEEEEcCCcchHHHH----HHcCCCeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARI-QGAAKIIGIDKNPCRKDKG----EAFGMTDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~-~G~~~Vi~~~~~~~~~~~~----~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      +...++.|+|+|..+...++.+.. +..++|.+.++++++.+..    +..+.....+.        .+.+      .++
T Consensus       123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~--------~~a~------~~a  188 (320)
T d1omoa_         123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQP--------AEEA------SRC  188 (320)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECC--------HHHH------TSS
T ss_pred             CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccch--------hhhh------ccc
Confidence            455788999999999887776664 5788999999999887533    33444433322        1222      258


Q ss_pred             cEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCCCcccCChHhH
Q 043260          270 DYGFECTGVASLISEALEATKLGKGKVMAIGAANEAKVPLNFPAI  314 (332)
Q Consensus       270 d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~  314 (332)
                      |+|+-++.+...+- -.+.++++ -++..+|......-+++...+
T Consensus       189 DiV~taT~s~~P~~-~~~~l~~G-~hv~~iGs~~p~~~Eld~~~~  231 (320)
T d1omoa_         189 DVLVTTTPSRKPVV-KAEWVEEG-THINAIGADGPGKQELDVEIL  231 (320)
T ss_dssp             SEEEECCCCSSCCB-CGGGCCTT-CEEEECSCCSTTCCCBCHHHH
T ss_pred             cEEEEeccCccccc-chhhcCCC-CeEeecCCccccccccCHHHh
Confidence            99999988753321 12468997 899999987755566776643

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.88  E-value=0.52  Score=41.10  Aligned_cols=31  Identities=26%  Similarity=0.295  Sum_probs=28.1

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEc
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGAAKIIGID  228 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~  228 (332)
                      |++|||+|+ |-+|..++..+...|. +|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            789999998 9999999999999998 999997

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.23  Score=38.72  Aligned_cols=94  Identities=23%  Similarity=0.231  Sum_probs=62.6

Q ss_pred             hcccchhhhHHHHHHhhCC-CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCC
Q 043260          176 FLSCGYSSGFGAAWKEFKV-EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       176 ~l~~~~~ta~~al~~~~~~-~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  253 (332)
                      .+||+....+.-+ +..++ -.|++|+|+|. ..+|.-++.++...|+ +|+.+......+                   
T Consensus        18 ~~PcTp~aii~lL-~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t~~l-------------------   76 (170)
T d1a4ia1          18 FIPCTPKGCLELI-KETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHL-------------------   76 (170)
T ss_dssp             CCCHHHHHHHHHH-HTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSH-------------------
T ss_pred             CCCChHHHHHHHH-HHhCcccccceEEEEecCCccchHHHHHHHhccC-ceEEEecccccH-------------------
Confidence            3454444344333 33343 47899999998 7899999999999998 888876543222                   


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                         .+.+      +.+|+++-++|.+..+.  -++++++ -.++.+|..
T Consensus        77 ---~~~~------~~aDivi~a~G~~~~i~--~~~vk~g-~iviDvgi~  113 (170)
T d1a4ia1          77 ---DEEV------NKGDILVVATGQPEMVK--GEWIKPG-AIVIDCGIN  113 (170)
T ss_dssp             ---HHHH------TTCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCB
T ss_pred             ---HHHH------hhccchhhccccccccc--cccccCC-CeEeccCcc
Confidence               1111      24788888888764433  3467887 888888864

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.86  E-value=0.54  Score=36.01  Aligned_cols=93  Identities=11%  Similarity=0.214  Sum_probs=58.5

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchHH-HHHHc-------CCCeeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRKD-KGEAF-------GMTDFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~-~~~~l-------ga~~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      .+|.|+|+|.+|..++..+...|. .+++++|.++++.+ .+..+       +...++...+     +    .+   -.+
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-----~----~~---~~~   87 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-----Y----NV---SAN   87 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-----G----GG---GTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-----h----hh---hcc
Confidence            579999999999999988888874 57999998876643 22121       2222222211     1    11   136


Q ss_pred             ccEEEEcCCCh---------------HHHH---HHHHHhccCCcEEEEEcCCC
Q 043260          269 VDYGFECTGVA---------------SLIS---EALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       269 ~d~vid~~g~~---------------~~~~---~~~~~l~~~~G~~v~~G~~~  303 (332)
                      .|+|+-+.|.+               ..+.   ..+.-.+++ |.++.+.++-
T Consensus        88 adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~-~ivivvtNPv  139 (159)
T d2ldxa1          88 SKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPD-CKIIVVTNPV  139 (159)
T ss_dssp             EEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTT-CEEEECSSSH
T ss_pred             ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCC-eEEEEeCCcH
Confidence            89999998864               1111   122334666 8888888765

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.81  E-value=0.13  Score=37.05  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.7

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .++++|+|+|.+|.-+++.++.+|. +|.++++.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence            3789999999999999999999999 999998764

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.74  E-value=0.21  Score=43.06  Aligned_cols=31  Identities=23%  Similarity=0.177  Sum_probs=27.1

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      +.|||+|+ |-+|..++..+...|. +|+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEEC
Confidence            46899998 9999999999988998 8999864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.73  E-value=0.093  Score=43.30  Aligned_cols=34  Identities=24%  Similarity=0.394  Sum_probs=29.4

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      +.|||+|+ +++|.+.++.+...|+ +|++++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence            35688888 9999999999999999 9999998754

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=91.72  E-value=1.2  Score=33.28  Aligned_cols=38  Identities=32%  Similarity=0.476  Sum_probs=31.4

Q ss_pred             CEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHH
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKD  235 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~  235 (332)
                      ++|.|+|+|.+|..++..+...| +.+++.+|.++++.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~   40 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVK   40 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhh
Confidence            57899999999998888777777 468999999887743

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=91.72  E-value=0.28  Score=40.85  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=30.2

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      +-++|||+|+ |-+|..++..+...|. +|++++|+.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCC
Confidence            3467999998 9999999999888998 899988864

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=91.71  E-value=1.4  Score=36.79  Aligned_cols=57  Identities=16%  Similarity=0.215  Sum_probs=40.5

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcC--CcchHHHHHHcCCCeee
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK--NPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~--~~~~~~~~~~lga~~v~  246 (332)
                      +...+.++.+|+...+|..|++++..++.+|.+-+|++..  ++.|.+.++.+|++-++
T Consensus        53 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~  111 (292)
T d2bhsa1          53 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELIL  111 (292)
T ss_dssp             HTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEE
T ss_pred             HhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcce
Confidence            4445566776666677999999999999999833333332  44567788899987543

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.62  E-value=0.17  Score=44.08  Aligned_cols=33  Identities=18%  Similarity=0.286  Sum_probs=27.9

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      +.|||+|+ |-+|..++..+...|. +|+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            56889998 9999999999988998 999999843

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.17  Score=40.76  Aligned_cols=95  Identities=8%  Similarity=-0.027  Sum_probs=64.2

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcC----CC--eeeCCCCCCCchHHHHHHHhc-C
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFG----MT--DFINPDDEPNKSISELVKEMT-H  265 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lg----a~--~v~~~~~~~~~~~~~~~~~~~-~  265 (332)
                      ...++.+||-+|+|. |..+..+++..+. +|+++|.+++-++.+++.-    ..  ..+..+          +.++. .
T Consensus        57 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d----------~~~~~~~  124 (222)
T d2ex4a1          57 NKTGTSCALDCGAGI-GRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG----------LQDFTPE  124 (222)
T ss_dssp             -CCCCSEEEEETCTT-THHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECC----------GGGCCCC
T ss_pred             CCCCCCEEEEeccCC-CHhhHHHHHhcCC-EEEEeecCHHHhhcccccccccccccccccccc----------ccccccc
Confidence            456778899999977 7777777766665 8999999999888776642    21  222221          11221 2


Q ss_pred             CCCccEEEEcCC-----Ch---HHHHHHHHHhccCCcEEEEEc
Q 043260          266 GTGVDYGFECTG-----VA---SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       266 ~~g~d~vid~~g-----~~---~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      ...||+|+....     .+   ..+..+.+.|+++ |.+++.-
T Consensus       125 ~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~-G~~~i~~  166 (222)
T d2ex4a1         125 PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN-GIIVIKD  166 (222)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cccccccccccccccchhhhhhhHHHHHHHhcCCc-ceEEEEE
Confidence            347999998432     22   3678889999998 9988764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.3  Score=39.58  Aligned_cols=107  Identities=11%  Similarity=0.114  Sum_probs=68.1

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHH----cCCCeeeCCCCCCCchHHHHHHHh-
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKGEA----FGMTDFINPDDEPNKSISELVKEM-  263 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~~~~~-  263 (332)
                      ...+....++||=+|.+. |..++.+|+.+. -.+|+.++.+++..+.+++    .|....+....   .+..+.+.++ 
T Consensus        53 ~L~~~~~~k~vLEiGt~~-GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~---Gda~e~l~~~~  128 (219)
T d2avda1          53 NLARLIQAKKALDLGTFT-GYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL---KPALETLDELL  128 (219)
T ss_dssp             HHHHHTTCCEEEEECCTT-SHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHH
T ss_pred             HHHHccCCCeEEEEechh-hHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEE---eehhhcchhhh
Confidence            344556778999999855 777778887763 2499999999988766544    46443222222   2233333332 


Q ss_pred             --cCCCCccEEEEcCCCh---HHHHHHHHHhccCCcEEEEEcC
Q 043260          264 --THGTGVDYGFECTGVA---SLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       264 --~~~~g~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                        .....||.||--..-.   ..+..+++.|+++ |.++.=..
T Consensus       129 ~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G-Gvii~Dn~  170 (219)
T d2avda1         129 AAGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLRV  170 (219)
T ss_dssp             HTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             hhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCC-cEEEEeCC
Confidence              1122699988754432   3467999999998 88877544

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.54  E-value=0.14  Score=41.75  Aligned_cols=100  Identities=19%  Similarity=0.275  Sum_probs=58.1

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHcCCCee-eCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAFGMTDF-INPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      .++|||+|+ |.+|..+++.+...|. .+|+++.|++.+...-+.-..... .|.     .+. +.+.+..  .++|+++
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~-----~~~-~~~~~~~--~~~d~vi   85 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDF-----EKL-DDYASAF--QGHDVGF   85 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCG-----GGG-GGGGGGG--SSCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecc-----ccc-ccccccc--ccccccc
Confidence            368999998 9999999998887784 489999887644321111111211 122     111 1222222  3699999


Q ss_pred             EcCCChH--------------HHHHHHHHhccCC-cEEEEEcCCCC
Q 043260          274 ECTGVAS--------------LISEALEATKLGK-GKVMAIGAANE  304 (332)
Q Consensus       274 d~~g~~~--------------~~~~~~~~l~~~~-G~~v~~G~~~~  304 (332)
                      .+++...              ....+.+.....+ -+|+.++....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~  131 (232)
T d2bkaa1          86 CCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGA  131 (232)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             ccccccccccchhhhhhhcccccceeeecccccCccccccCCcccc
Confidence            9988631              1123444444431 35777776554

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.50  E-value=0.82  Score=36.39  Aligned_cols=94  Identities=14%  Similarity=0.108  Sum_probs=64.7

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCee--eCCCCCCCchHHHHHHHhcCCCCcc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDF--INPDDEPNKSISELVKEMTHGTGVD  270 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v--~~~~~~~~~~~~~~~~~~~~~~g~d  270 (332)
                      +..||=+|+|. |..++.+|+..--..+++++.+...+..+    ++.|.+-+  +..+.   ..+    .+......+|
T Consensus        30 ~PlvLeIGcG~-G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da---~~l----~~~~~~~~~d  101 (204)
T d2fcaa1          30 NPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA---DTL----TDVFEPGEVK  101 (204)
T ss_dssp             CCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG---GGH----HHHCCTTSCC
T ss_pred             CceEEEEEecC-cHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccch---hhh----hcccCchhhh
Confidence            34566679987 88889999987545999999998877543    45676533  33322   222    2333344688


Q ss_pred             EEEEcCCCh--------------HHHHHHHHHhccCCcEEEEE
Q 043260          271 YGFECTGVA--------------SLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       271 ~vid~~g~~--------------~~~~~~~~~l~~~~G~~v~~  299 (332)
                      .|+-....+              ..+..+.+.|+|+ |.+.+.
T Consensus       102 ~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg-G~l~i~  143 (204)
T d2fcaa1         102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG-GSIHFK  143 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS-CEEEEE
T ss_pred             ccccccccccchhhhcchhhhHHHHHHHHHHhCCCC-cEEEEE
Confidence            888665542              5788999999998 998775

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.50  E-value=0.13  Score=39.35  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=30.5

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~  231 (332)
                      .|++|+|+|+|..|+.+++.++..+. .+|+++++++
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            47899999999999999999988874 2788888765

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.50  E-value=0.42  Score=35.25  Aligned_cols=27  Identities=15%  Similarity=0.329  Sum_probs=23.4

Q ss_pred             EEEEECC-ChHHHHHHHHHHHcCCCeEEE
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQGAAKIIG  226 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~G~~~Vi~  226 (332)
                      +|.|+|+ |-+|.+..+++...+. +++.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~-~l~~   29 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGH-ELVL   29 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEE
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCC-eEEE
Confidence            6899998 9999999999999998 5554

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.42  E-value=0.41  Score=41.09  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=32.9

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchH
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRK  234 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~  234 (332)
                      +.++|+|+|+ |.+|..++..+...|. +|+++.|+..+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcchh
Confidence            4578999998 9999999999999999 899998876654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.42  E-value=0.098  Score=41.79  Aligned_cols=31  Identities=29%  Similarity=0.420  Sum_probs=28.6

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      |+|+|+|..|+.++..+...|. +|.++++++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            7899999999999999999998 999999865

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.37  E-value=0.17  Score=43.90  Aligned_cols=75  Identities=19%  Similarity=0.257  Sum_probs=47.1

Q ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEE
Q 043260          195 EKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGF  273 (332)
Q Consensus       195 ~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vi  273 (332)
                      .+.++|||+|+ |-+|..++..+...|. +|+++++..... .............+-   .+... +.+..  .++|.|+
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~~-~~~~~~~~~~~~~D~---~~~~~-~~~~~--~~~d~Vi   84 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEH-MTEDMFCDEFHLVDL---RVMEN-CLKVT--EGVDHVF   84 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSS-SCGGGTCSEEEECCT---TSHHH-HHHHH--TTCSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCccc-hhhhcccCcEEEeec---hhHHH-HHHHh--hcCCeEe
Confidence            45789999998 9999999999999998 999987644321 111222222222222   22322 22222  2689999


Q ss_pred             EcCC
Q 043260          274 ECTG  277 (332)
Q Consensus       274 d~~g  277 (332)
                      .+++
T Consensus        85 h~a~   88 (363)
T d2c5aa1          85 NLAA   88 (363)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            9774

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.29  E-value=0.14  Score=40.87  Aligned_cols=41  Identities=27%  Similarity=0.462  Sum_probs=36.2

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA  239 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~  239 (332)
                      ++|.|+|+|-+|+.++..+...|. +|+++|.++++.+.+.+
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence            368899999999999888888999 99999999988877765

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.21  E-value=0.12  Score=41.55  Aligned_cols=36  Identities=31%  Similarity=0.437  Sum_probs=32.5

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      .|++|.|+|.|.+|..++++++.+|+ +|++.++...
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   79 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPM   79 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCccc
Confidence            46899999999999999999999999 9999987643

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=91.15  E-value=0.069  Score=44.41  Aligned_cols=103  Identities=15%  Similarity=0.076  Sum_probs=63.6

Q ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCeeeCCCCCCCchHHHHHHHh
Q 043260          188 AWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDFINPDDEPNKSISELVKEM  263 (332)
Q Consensus       188 l~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v~~~~~~~~~~~~~~~~~~  263 (332)
                      +.+...+...++||=+|+|. |..+..+++...-.+++++|.. +..+.+    .+.|...-+....   .++    .+.
T Consensus        72 ~~~~~d~~~~~~VLDvGcG~-G~~~~~la~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~---~D~----~~~  142 (253)
T d1tw3a2          72 PAAAYDWTNVRHVLDVGGGK-GGFAAAIARRAPHVSATVLEMA-GTVDTARSYLKDEGLSDRVDVVE---GDF----FEP  142 (253)
T ss_dssp             HHHHSCCTTCSEEEEETCTT-SHHHHHHHHHCTTCEEEEEECT-THHHHHHHHHHHTTCTTTEEEEE---CCT----TSC
T ss_pred             HHhhcCCccCCEEEEeCCCC-CHHHHHHHHhcceeEEEEccCH-HHHHHHHHHHHHhhcccchhhcc---ccc----hhh
Confidence            33555677888999999976 8888899988754488888874 333333    3344321111110   111    111


Q ss_pred             cCCCCccEEEEcCC-----Ch---HHHHHHHHHhccCCcEEEEEcC
Q 043260          264 THGTGVDYGFECTG-----VA---SLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       264 ~~~~g~d~vid~~g-----~~---~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      .. .++|+|+-..-     .+   ..+..+.+.|+|+ |++++.-.
T Consensus       143 ~~-~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG-G~l~i~e~  186 (253)
T d1tw3a2         143 LP-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPG-GRILIHER  186 (253)
T ss_dssp             CS-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             cc-cchhheeeccccccCCchhhHHHHHHHHHhcCCC-cEEEEEec
Confidence            12 26999986432     22   3478899999998 99988754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.00  E-value=0.085  Score=43.57  Aligned_cols=32  Identities=31%  Similarity=0.497  Sum_probs=29.1

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      +|+|+|+|..|+.++..++..|. +|++++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            58999999999999999999999 899998753

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.97  E-value=0.16  Score=40.07  Aligned_cols=36  Identities=36%  Similarity=0.605  Sum_probs=33.0

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      .|++|.|+|.|.+|...+++++.+|. +|++.+++..
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCceEEEeccccccccceeeeecccc-cccccccccc
Confidence            57899999999999999999999999 9999998653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.93  E-value=0.12  Score=44.46  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=30.5

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .++|+|+|+|..|+.++..++..|. +|.+++.++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence            4689999999999999999998998 999998765

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=90.88  E-value=0.44  Score=35.73  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=28.2

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCcchH
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNPCRK  234 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~  234 (332)
                      .+|.|+|+|.+|...+..+...+. .+++++|.++++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~   39 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKA   39 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---C
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCcc
Confidence            368899999999998888887774 5799999888663

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=90.82  E-value=0.12  Score=42.20  Aligned_cols=32  Identities=34%  Similarity=0.379  Sum_probs=28.5

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      |+|+|+|+.|+.++..+...|. +|+++++++.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            7899999999999998999999 9999987653

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.82  E-value=0.1  Score=43.60  Aligned_cols=45  Identities=13%  Similarity=-0.006  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA  239 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~  239 (332)
                      +...|+++|=+|+|+ |...+..+...+. +|+++|.++.-++.+++
T Consensus        51 g~~~g~~vLDiGcG~-g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~   95 (263)
T d2g72a1          51 GEVSGRTLIDIGSGP-TVYQLLSACSHFE-DITMTDFLEVNRQELGR   95 (263)
T ss_dssp             SCSCCSEEEEETCTT-CCGGGTTGGGGCS-EEEEECSCHHHHHHHHH
T ss_pred             CCCCCcEEEEeccCC-CHHHHHHhcccCC-eEEEEeCCHHHHHHHHH
Confidence            456788999999976 4444334444444 89999999998887765

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.80  E-value=0.12  Score=42.63  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=29.5

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      .|+|+|+|+.|++++..+...|. +|.+++.++.
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            38899999999999999999998 9999998764

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=90.78  E-value=0.46  Score=39.22  Aligned_cols=101  Identities=11%  Similarity=-0.100  Sum_probs=66.5

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc-CCCeeeCCCCCCCchHHHHHHHhc-CCC
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF-GMTDFINPDDEPNKSISELVKEMT-HGT  267 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l-ga~~v~~~~~~~~~~~~~~~~~~~-~~~  267 (332)
                      +.....++.+||=+|+|. |..+..++...+. +|.+++.+++-++.+++. .....++...   .+    +.++. ...
T Consensus        87 ~~l~~~~~~~vLD~GcG~-G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~---~d----~~~~~~~~~  157 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGI-GRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFIL---AS----METATLPPN  157 (254)
T ss_dssp             HTSTTCCCSEEEEETCTT-THHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEE---SC----GGGCCCCSS
T ss_pred             hhCCCCCCCeEEEecccC-ChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEE---cc----ccccccCCC
Confidence            344456778899999977 8888888876665 899999999888888753 2222221111   11    12222 233


Q ss_pred             CccEEEEcCCC-----h---HHHHHHHHHhccCCcEEEEEc
Q 043260          268 GVDYGFECTGV-----A---SLISEALEATKLGKGKVMAIG  300 (332)
Q Consensus       268 g~d~vid~~g~-----~---~~~~~~~~~l~~~~G~~v~~G  300 (332)
                      .||+|+..-.-     +   ..+..+.+.|+++ |.+++.-
T Consensus       158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg-G~iii~e  197 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN-GYIFFKE  197 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ccceEEeeccccccchhhhHHHHHHHHHhcCCC-cEEEEEe
Confidence            69999985432     1   3478889999998 9888753

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.67  E-value=0.56  Score=39.46  Aligned_cols=97  Identities=14%  Similarity=0.235  Sum_probs=60.0

Q ss_pred             hhCCCCCCEEEEECC--ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCCeee-CCCCCCCchHHHHHHHh
Q 043260          191 EFKVEKGSSVAVFGL--GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMTDFI-NPDDEPNKSISELVKEM  263 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~--g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~~v~-~~~~~~~~~~~~~~~~~  263 (332)
                      ....++|++||=.-|  |+=..   +++..+.-..|++.|.+..|.+.+    +.+|...+. ...+   ....    ..
T Consensus        97 ~L~~~~g~~vLD~CAaPGgKt~---~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~---~~~~----~~  166 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGKTT---HILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG---RYPS----QW  166 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHH---HHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT---TCTH----HH
T ss_pred             ccCccccceeEeccCccccchh---hhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc---cccc----hh
Confidence            347899999988744  44333   334444334899999999998654    557876332 2222   1111    12


Q ss_pred             cCCCCccEEEE---cCCCh-------------------------HHHHHHHHHhccCCcEEEE
Q 043260          264 THGTGVDYGFE---CTGVA-------------------------SLISEALEATKLGKGKVMA  298 (332)
Q Consensus       264 ~~~~g~d~vid---~~g~~-------------------------~~~~~~~~~l~~~~G~~v~  298 (332)
                      .....||.|+-   |+|++                         ..+..+++.++++ |++|-
T Consensus       167 ~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g-G~lvY  228 (284)
T d1sqga2         167 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVY  228 (284)
T ss_dssp             HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEE
T ss_pred             cccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC-ceEEE
Confidence            22336887775   66653                         3567788889997 87663

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=0.044  Score=47.05  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=27.9

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      ++|||+|+ |-+|..++..+...|. +|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            68999998 9999999999988998 8999875

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=1.3  Score=38.26  Aligned_cols=57  Identities=19%  Similarity=0.242  Sum_probs=42.0

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcC--CcchHHHHHHcCCCeee
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK--NPCRKDKGEAFGMTDFI  246 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~--~~~~~~~~~~lga~~v~  246 (332)
                      +...+++++.|+...+|..|.+++..++.+|.+-++++..  +++|.+.++.+|++-+.
T Consensus        90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~  148 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVR  148 (355)
T ss_dssp             HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEE
T ss_pred             HcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEE
Confidence            4445677777666677999999999999999944444433  34677888999997554

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.15  Score=45.91  Aligned_cols=34  Identities=26%  Similarity=0.445  Sum_probs=30.6

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .+|||+|+|++|--++..+...|.+++.++|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            6799999999999999999999999999999644

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.62  E-value=0.34  Score=41.07  Aligned_cols=33  Identities=33%  Similarity=0.415  Sum_probs=29.9

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGID  228 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~  228 (332)
                      -.|.+|+|.|-|.+|..+++++...|+ +|+.++
T Consensus        34 L~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vs   66 (293)
T d1hwxa1          34 FGDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVG   66 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            367899999999999999999999999 888775

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.49  E-value=0.58  Score=38.25  Aligned_cols=33  Identities=30%  Similarity=0.402  Sum_probs=27.9

Q ss_pred             CCCCEEEEECCChHHHHHHHHH-HHcCCCeEEEEc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRA-RIQGAAKIIGID  228 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la-~~~G~~~Vi~~~  228 (332)
                      -+|.+|+|.|.|.+|..+++++ +..|+ +|+.++
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vs   62 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVS   62 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEee
Confidence            4689999999999999999887 56798 777765

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.38  E-value=2  Score=33.41  Aligned_cols=105  Identities=18%  Similarity=0.286  Sum_probs=68.6

Q ss_pred             HhhCCCCCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCC--eeeCCCCCCCchHHHHHHHhcCC
Q 043260          190 KEFKVEKGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMT--DFINPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~--~v~~~~~~~~~~~~~~~~~~~~~  266 (332)
                      +...+++|++ +|-++ |.=|+.... ++. +. +|+++|++++.++.+++.-..  ..+...-   .++.+.+.... -
T Consensus        12 ~~l~~~~g~~-~vD~T~G~GGhs~~i-L~~-~~-~viaiD~D~~ai~~a~~~~~~~~~~~~~~f---~~~~~~l~~~~-~   83 (182)
T d1wg8a2          12 DLLAVRPGGV-YVDATLGGAGHARGI-LER-GG-RVIGLDQDPEAVARAKGLHLPGLTVVQGNF---RHLKRHLAALG-V   83 (182)
T ss_dssp             HHHTCCTTCE-EEETTCTTSHHHHHH-HHT-TC-EEEEEESCHHHHHHHHHTCCTTEEEEESCG---GGHHHHHHHTT-C
T ss_pred             HhcCCCCCCE-EEEeCCCCcHHHHHH-hcc-cC-cEEEEhhhhhHHHHHhhccccceeEeehHH---HHHHHHHHHcC-C
Confidence            4456788886 45555 665665433 343 55 899999999998888775322  3333333   55555555543 3


Q ss_pred             CCccEEEEcCCCh---------------HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          267 TGVDYGFECTGVA---------------SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       267 ~g~d~vid~~g~~---------------~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      ..+|.|+=-.|-.               ..+...++.++++ |+++.+....
T Consensus        84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~g-g~~~ii~fhs  134 (182)
T d1wg8a2          84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG-GRLVVIAFHS  134 (182)
T ss_dssp             SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE-EEEEEEECSH
T ss_pred             CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCC-CeEEEEeccc
Confidence            3688877655542               1478889999998 9999887654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.24  E-value=0.3  Score=35.20  Aligned_cols=66  Identities=11%  Similarity=0.074  Sum_probs=42.4

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCC--eEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAA--KIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~--~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      +..++++|+|+|.+|.-++..+..+|.+  +|.++.+.+.            ++..-+   .+..+.+.+....+|+++.
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~------------iL~~~d---~~~~~~l~~~l~~~GV~v~   82 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM------------ILRGFD---HTLREELTKQLTANGIQIL   82 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS------------SSTTSC---HHHHHHHHHHHHHTTCEEE
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch------------hhcccc---hHHHHHHHHHHHhcCcEEE
Confidence            3457899999999999988888877642  6888876432            111112   4444555554444567777


Q ss_pred             EEc
Q 043260          273 FEC  275 (332)
Q Consensus       273 id~  275 (332)
                      .++
T Consensus        83 ~~~   85 (117)
T d1aoga2          83 TKE   85 (117)
T ss_dssp             ESC
T ss_pred             cCC
Confidence            654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.23  E-value=0.29  Score=37.19  Aligned_cols=40  Identities=10%  Similarity=0.099  Sum_probs=34.3

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD  235 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~  235 (332)
                      |..+|.|+|+|.+|...+.++...+..+++++|.++++.+
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~   41 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPH   41 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcce
Confidence            4578999999999999888888888889999999887643

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=90.15  E-value=1.2  Score=34.23  Aligned_cols=72  Identities=21%  Similarity=0.157  Sum_probs=42.8

Q ss_pred             CCCEEEEECCChHHHH--HHHHHHHc-C--CCeEEEEcCCcchHHHH--------HHcCCC-eeeCCCCCCCchHHHHHH
Q 043260          196 KGSSVAVFGLGAVGLG--VMDRARIQ-G--AAKIIGIDKNPCRKDKG--------EAFGMT-DFINPDDEPNKSISELVK  261 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~--~~~la~~~-G--~~~Vi~~~~~~~~~~~~--------~~lga~-~v~~~~~~~~~~~~~~~~  261 (332)
                      +.-+|.|+|+|.+|..  ...+++.. .  ..+++.+|.+++|++..        ...+.+ .+...     .+..+++ 
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~eal-   75 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-----TDPEEAF-   75 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-----SCHHHHH-
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-----CChhhcc-
Confidence            3446899999776533  33333322 2  24899999999887621        233444 33322     2333333 


Q ss_pred             HhcCCCCccEEEEcCCC
Q 043260          262 EMTHGTGVDYGFECTGV  278 (332)
Q Consensus       262 ~~~~~~g~d~vid~~g~  278 (332)
                           .++|+|+.++|-
T Consensus        76 -----~~AD~Vvitag~   87 (167)
T d1u8xx1          76 -----TDVDFVMAHIRV   87 (167)
T ss_dssp             -----SSCSEEEECCCT
T ss_pred             -----CCCCEEEECCCc
Confidence                 269999999985

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=90.01  E-value=1.2  Score=33.65  Aligned_cols=79  Identities=15%  Similarity=0.152  Sum_probs=51.5

Q ss_pred             EEEEECCChHHHH-HHHHHHHc-CCCeEE-EEcCCcchHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          199 SVAVFGLGAVGLG-VMDRARIQ-GAAKII-GIDKNPCRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       199 ~vlV~G~g~vG~~-~~~la~~~-G~~~Vi-~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      +|.|+|+|.+|.- .+...+.. ++ +++ +.+++.++.+ .+++++... .       +++.+ +   ..  .+|+|+-
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~-~i~~v~d~~~~~~~~~~~~~~~~~-~-------~~~~~-l---~~--~~D~V~I   67 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDW-TLQGAWSPTRAKALPICESWRIPY-A-------DSLSS-L---AA--SCDAVFV   67 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSE-EEEEEECSSCTTHHHHHHHHTCCB-C-------SSHHH-H---HT--TCSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEEechhHhhhhhhhcccccc-c-------ccchh-h---hh--hcccccc
Confidence            6889999999864 56666654 56 555 5667666654 556777542 1       22222 2   22  4899999


Q ss_pred             cCCChHHHHHHHHHhccC
Q 043260          275 CTGVASLISEALEATKLG  292 (332)
Q Consensus       275 ~~g~~~~~~~~~~~l~~~  292 (332)
                      ++....+...+..++..+
T Consensus        68 ~tp~~~h~~~~~~al~~g   85 (164)
T d1tlta1          68 HSSTASHFDVVSTLLNAG   85 (164)
T ss_dssp             CSCTTHHHHHHHHHHHTT
T ss_pred             cccchhcccccccccccc
Confidence            988877777888887764

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.01  E-value=0.44  Score=35.04  Aligned_cols=89  Identities=16%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             CCCEEEEECCChH-----------HHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhc
Q 043260          196 KGSSVAVFGLGAV-----------GLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       196 ~g~~vlV~G~g~v-----------G~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      .-++|||+|+|+.           +..++..++..|+ ++|.+..+++....-..+ +|+++-..- ..+...+.+++  
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd~d~-aD~lYfePl-t~e~v~~Ii~~--   80 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTDPEM-ADATYIEPI-HWEVVRKIIEK--   80 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGCGGG-SSEEECSCC-CHHHHHHHHHH--
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcChhh-cceeeeecC-CHHHHHHHHHH--
Confidence            4478999998764           3445555667799 899999998875433222 566653321 12333333333  


Q ss_pred             CCCCccEEEEcCCChHHHHHHHHHhcc
Q 043260          265 HGTGVDYGFECTGVASLISEALEATKL  291 (332)
Q Consensus       265 ~~~g~d~vid~~g~~~~~~~~~~~l~~  291 (332)
                        ..+|.|+-..|+...++.+.+....
T Consensus        81 --E~pd~il~~~GGQtalnla~~L~~~  105 (127)
T d1a9xa3          81 --ERPDAVLPTMGGQTALNCALELERQ  105 (127)
T ss_dssp             --HCCSEEECSSSHHHHHHHHHHHHHT
T ss_pred             --hCcCCeEEEeeeehHhHHHHHHHHc
Confidence              3689999999998677777766554

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=89.98  E-value=0.082  Score=41.20  Aligned_cols=81  Identities=23%  Similarity=0.296  Sum_probs=48.9

Q ss_pred             EEEEECCChHHHHHHHHHHHc-CCCeEEE-EcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQ-GAAKIIG-IDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~-G~~~Vi~-~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      +|.|+|+|.+|...+..++.. ++ +++. +++++++.+      ...+....+         ...+.  ..+|+|+.|+
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~-elvav~~~~~~~~~------~~~~~~~~~---------~~~~~--~~~D~Vvi~t   66 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDM-DLVGIFSRRATLDT------KTPVFDVAD---------VDKHA--DDVDVLFLCM   66 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSE-EEEEEEESSSCCSS------SSCEEEGGG---------GGGTT--TTCSEEEECS
T ss_pred             eEEEECChHHHHHHHHHHHhCCCc-EEEEEEeccccccc------ccccccchh---------hhhhc--cccceEEEeC
Confidence            689999999999888877765 56 5554 455443321      111211111         11111  2478888888


Q ss_pred             CChHHHHHHHHHhccCCcEEEE
Q 043260          277 GVASLISEALEATKLGKGKVMA  298 (332)
Q Consensus       277 g~~~~~~~~~~~l~~~~G~~v~  298 (332)
                      +...+.+.+.++|..| -.++.
T Consensus        67 p~~~h~~~a~~aL~aG-~~vv~   87 (170)
T d1f06a1          67 GSATDIPEQAPKFAQF-ACTVD   87 (170)
T ss_dssp             CTTTHHHHHHHHHTTT-SEEEC
T ss_pred             CCcccHHHHHHHHHCC-CcEEE
Confidence            8776777888888875 55553

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.84  E-value=0.15  Score=40.71  Aligned_cols=31  Identities=29%  Similarity=0.283  Sum_probs=27.9

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      |+|+|+|+.|+.++..+..+|. +|++++..+
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~-kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            7889999999999999999998 899998653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.82  E-value=0.29  Score=35.17  Aligned_cols=35  Identities=9%  Similarity=0.040  Sum_probs=27.9

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHc---CCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQ---GAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~---G~~~Vi~~~~~~  231 (332)
                      ..++++|+|+|.+|.-+++++..+   |. +|.++.+.+
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~   54 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGD   54 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSS
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhccccc-ccceecccc
Confidence            347899999999999888876655   66 888887654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.79  E-value=0.074  Score=41.86  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=29.7

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ++..|+|+|+|+.|+.++..+..+|. +|+++++.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEee
Confidence            45679999999999999999999999 88888754

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=89.68  E-value=0.36  Score=39.81  Aligned_cols=36  Identities=31%  Similarity=0.399  Sum_probs=31.4

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      .--.|.+|+|.|-|.+|..+++++...|+ +|+.++.
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD   62 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSD   62 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEEC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeec
Confidence            33578999999999999999999999999 8887653

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=89.63  E-value=0.47  Score=38.66  Aligned_cols=84  Identities=12%  Similarity=0.009  Sum_probs=52.1

Q ss_pred             CEEEEECCCh----HHHHHHHHHHHc--CCCeEE-EEcCCcchHH-HHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          198 SSVAVFGLGA----VGLGVMDRARIQ--GAAKII-GIDKNPCRKD-KGEAFGMTDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       198 ~~vlV~G~g~----vG~~~~~la~~~--G~~~Vi-~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      -+|.|+|+|.    ++...+...+..  ++ +|+ +.+++.++.+ .+++++....-.+.     ++.+.+.    ...+
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~----~~~i   86 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSLQTIEQLQLKHATGFD-----SLESFAQ----YKDI   86 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHHHHHHHTTCTTCEEES-----CHHHHHH----CTTC
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHHHHHHhcccccceeec-----chhhccc----cccc
Confidence            5789999865    444444445443  45 666 4677766654 56777765332232     2333222    3368


Q ss_pred             cEEEEcCCChHHHHHHHHHhcc
Q 043260          270 DYGFECTGVASLISEALEATKL  291 (332)
Q Consensus       270 d~vid~~g~~~~~~~~~~~l~~  291 (332)
                      |+|+.++....+.+.+..+|..
T Consensus        87 D~V~i~tp~~~h~~~~~~al~a  108 (237)
T d2nvwa1          87 DMIVVSVKVPEHYEVVKNILEH  108 (237)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHH
T ss_pred             ceeeccCCCcchhhHHHHHHHh
Confidence            9999999887777777777765

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.34  E-value=2.3  Score=31.48  Aligned_cols=38  Identities=16%  Similarity=0.058  Sum_probs=31.0

Q ss_pred             CEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHH
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKD  235 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~  235 (332)
                      .+|.|+|+|.+|..++..+...| +.+++++|.++++.+
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~   39 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAV   39 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhh
Confidence            36889999999999888777776 468999999887743

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.32  E-value=0.19  Score=42.77  Aligned_cols=33  Identities=30%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      .|+|+|||..|++++..++..|. ++++++..++
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~~   41 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGR-SVHVIETAGD   41 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCC-CEEEEEcCCC
Confidence            48999999999999999999999 8999987653

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.27  E-value=0.25  Score=35.93  Aligned_cols=36  Identities=19%  Similarity=0.320  Sum_probs=31.8

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      +.+++++|+|+|.+|+-+++.+..+|. +|.++++++
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence            345789999999999999999999998 999998764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.21  E-value=0.17  Score=39.10  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=26.6

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      |+|+|+|+.|+.++..+...|. +|.++++
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~-~v~iie~   32 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGI-RTGLMGE   32 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             EEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence            7899999999999999999999 8888875

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.18  E-value=0.23  Score=36.30  Aligned_cols=88  Identities=14%  Similarity=0.032  Sum_probs=53.5

Q ss_pred             CCCEEEEECCChH-----------HHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhc
Q 043260          196 KGSSVAVFGLGAV-----------GLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       196 ~g~~vlV~G~g~v-----------G~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      ..++|||+|+|+.           +..++..++..|. ++|++..+++....-.. =+|+++-..- ..+...+.+++  
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPeTVstd~d-~aD~lYfepl-t~e~v~~Ii~~--   77 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPETVSTDYD-TSDRLYFEPV-TLEDVLEIVRI--   77 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTTSSTTSTT-SSSEEECCCC-SHHHHHHHHHH--
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChhhhhcChh-hcCceEEccC-CHHHHHHHHHH--
Confidence            3468999998764           3445566667799 99999998876542212 2566653321 11222222222  


Q ss_pred             CCCCccEEEEcCCChHHHHHHHHHhc
Q 043260          265 HGTGVDYGFECTGVASLISEALEATK  290 (332)
Q Consensus       265 ~~~g~d~vid~~g~~~~~~~~~~~l~  290 (332)
                        .++|.|+-..|+...++.+.+.-+
T Consensus        78 --E~p~~ii~~~GGQtalnla~~L~~  101 (121)
T d1a9xa4          78 --EKPKGVIVQYGGQTPLKLARALEA  101 (121)
T ss_dssp             --HCCSEEECSSSTHHHHTTHHHHHH
T ss_pred             --hCCCEEEeehhhhhHHHHHHHHHH
Confidence              367899999999766655555443

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=89.06  E-value=0.89  Score=39.27  Aligned_cols=107  Identities=20%  Similarity=0.201  Sum_probs=71.2

Q ss_pred             CCCCEEEEECCChHHHHHHHHH-HHcCCCeEEEEcCCcchHH-HHHHcCC---CeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRA-RIQGAAKIIGIDKNPCRKD-KGEAFGM---TDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la-~~~G~~~Vi~~~~~~~~~~-~~~~lga---~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      +..+++.|+|+|..+...++.. ..++.++|.+.+++.++.+ +++++..   -.+...     .+..+++      +++
T Consensus       126 ~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~-----~s~~eav------~~A  194 (340)
T d1x7da_         126 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRA-----SSVAEAV------KGV  194 (340)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEEC-----SSHHHHH------TTC
T ss_pred             cCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceec-----CCHHHHH------hcC
Confidence            4557889999999998877744 5678899999999987765 4444432   123222     3344444      268


Q ss_pred             cEEEEcCCChH---HHHHHHHHhccCCcEEEEEcCCCCCcccCChHhHh
Q 043260          270 DYGFECTGVAS---LISEALEATKLGKGKVMAIGAANEAKVPLNFPAIA  315 (332)
Q Consensus       270 d~vid~~g~~~---~~~~~~~~l~~~~G~~v~~G~~~~~~~~~~~~~~~  315 (332)
                      |+|+-++.+..   .+.  .++++++ -++..+|......-+++...+.
T Consensus       195 DIi~t~Tas~s~~Pv~~--~~~l~pG-~hI~aiGs~~p~~~Eld~~~l~  240 (340)
T d1x7da_         195 DIITTVTADKAYATIIT--PDMLEPG-MHLNAVGGDCPGKTELHADVLR  240 (340)
T ss_dssp             SEEEECCCCSSEEEEEC--GGGCCTT-CEEEECSCCBTTBEEECHHHHH
T ss_pred             CceeeccccCCCCcccc--hhhcCCC-CEEeecccchhhhhccCHHHHh
Confidence            99998886531   222  3578987 8888999876555667765443

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=88.93  E-value=0.35  Score=38.16  Aligned_cols=91  Identities=14%  Similarity=0.133  Sum_probs=60.1

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      .+.++++||=+|+|. |..+..+      .+++.+|.+++-++.+++.+...+. .+.   .++      ......||+|
T Consensus        33 ~~~~~~~vLDiGcG~-G~~~~~~------~~~~giD~s~~~~~~a~~~~~~~~~-~d~---~~l------~~~~~~fD~I   95 (208)
T d1vlma_          33 CLLPEGRGVEIGVGT-GRFAVPL------KIKIGVEPSERMAEIARKRGVFVLK-GTA---ENL------PLKDESFDFA   95 (208)
T ss_dssp             HHCCSSCEEEETCTT-STTHHHH------TCCEEEESCHHHHHHHHHTTCEEEE-CBT---TBC------CSCTTCEEEE
T ss_pred             hhCCCCeEEEECCCC-ccccccc------ceEEEEeCChhhccccccccccccc-ccc---ccc------cccccccccc
Confidence            346677899999864 5444433      2578999999999999887653332 221   111      0123369999


Q ss_pred             EEcCC-----Ch-HHHHHHHHHhccCCcEEEEEcC
Q 043260          273 FECTG-----VA-SLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       273 id~~g-----~~-~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      +..-.     +. ..+.++.+.|+++ |.+++.-.
T Consensus        96 ~~~~~l~h~~d~~~~l~~~~~~L~pg-G~l~i~~~  129 (208)
T d1vlma_          96 LMVTTICFVDDPERALKEAYRILKKG-GYLIVGIV  129 (208)
T ss_dssp             EEESCGGGSSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             ccccccccccccccchhhhhhcCCCC-ceEEEEec
Confidence            98533     22 3578999999998 98887653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=88.66  E-value=0.22  Score=41.12  Aligned_cols=31  Identities=13%  Similarity=0.170  Sum_probs=28.0

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      |+|+|+|.+|++++..+...|. +|+++++.+
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENK-NTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8999999999999999888998 999999754

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.61  E-value=0.19  Score=42.51  Aligned_cols=31  Identities=19%  Similarity=0.337  Sum_probs=28.1

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      |+|+|+|..|+.++..++..|. +|++++.++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            7899999999999999999999 999998654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.53  E-value=0.26  Score=38.92  Aligned_cols=40  Identities=28%  Similarity=0.269  Sum_probs=33.6

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA  239 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~  239 (332)
                      ++|.|+|.|-+|+..+.++. .|. +|+++|.++++.+.+++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTS-EEEEECSCHHHHHHHHT
T ss_pred             CEEEEECCChhHHHHHHHHH-CCC-cEEEEECCHHHHHHHhh
Confidence            36889999999998876664 698 99999999998887754

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.41  E-value=0.063  Score=44.32  Aligned_cols=45  Identities=16%  Similarity=0.027  Sum_probs=32.0

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHH
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEA  239 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~  239 (332)
                      ...+|++||=+|+|. |.....+++. +..+|+++|.++.-++.+++
T Consensus        48 ~~~~g~~vLDlGcG~-G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~   92 (257)
T d2a14a1          48 GGLQGDTLIDIGSGP-TIYQVLAACD-SFQDITLSDFTDRNREELEK   92 (257)
T ss_dssp             TSCCEEEEEESSCTT-CCGGGTTGGG-TEEEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCC-CHhHHHHhcc-ccCcEEEecCCHHHHHHHHH
Confidence            346788888889875 5444444443 44489999999988887754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=88.32  E-value=0.23  Score=41.70  Aligned_cols=33  Identities=27%  Similarity=0.525  Sum_probs=28.0

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .|+|+|+|.+|++++..+...|.++|++++++.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            489999999999988888888975799998753

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.26  E-value=0.24  Score=39.61  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=27.6

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      |+|+|+|+.|+.++..+..+|. +|++++..+
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~-kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGF-NTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            7889999999999999999998 899998654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.08  E-value=0.21  Score=39.74  Aligned_cols=30  Identities=27%  Similarity=0.413  Sum_probs=27.5

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      |+|+|+|+.|+.++..+..+|. +|.+++..
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            7889999999999999999998 89999864

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.05  E-value=0.19  Score=40.68  Aligned_cols=104  Identities=17%  Similarity=0.162  Sum_probs=58.5

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHH----HHcCCCeeeCCCCCCCchHHHHHHHhcCCC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKG----EAFGMTDFINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~----~~lga~~v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      +..+.++||=+|.+. |..++.+++.+. -.+|+.++.+++..+.+    ++.|...-+........+....+.+..+..
T Consensus        53 ~~~kpk~ILEiGt~~-G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~  131 (214)
T d2cl5a1          53 REYSPSLVLELGAYC-GYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVD  131 (214)
T ss_dssp             HHHCCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred             HhhCCCEEEEEccCc-hhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccc
Confidence            344557899999754 666677777653 23899999998877655    445653212111100122222233333334


Q ss_pred             CccEEEEcCCChH-----HHHHHHHHhccCCcEEEE
Q 043260          268 GVDYGFECTGVAS-----LISEALEATKLGKGKVMA  298 (332)
Q Consensus       268 g~d~vid~~g~~~-----~~~~~~~~l~~~~G~~v~  298 (332)
                      .+|+||--.....     .+...++.|+++ |.++.
T Consensus       132 ~~D~ifiD~~~~~~~~~~~l~~~~~lLkpG-GvIv~  166 (214)
T d2cl5a1         132 TLDMVFLDHWKDRYLPDTLLLEKCGLLRKG-TVLLA  166 (214)
T ss_dssp             CEEEEEECSCGGGHHHHHHHHHHTTCEEEE-EEEEE
T ss_pred             ccceeeecccccccccHHHHHHHhCccCCC-cEEEE
Confidence            6998876533221     133455568987 86554

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.93  E-value=0.19  Score=42.66  Aligned_cols=32  Identities=19%  Similarity=0.301  Sum_probs=28.5

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .++|+|||..|+.++..+...|. +|.+++.++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence            37899999999999999998998 999998754

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.78  E-value=0.28  Score=38.98  Aligned_cols=30  Identities=30%  Similarity=0.337  Sum_probs=27.2

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      |+|+|+|+.|+.++..+...|. +|.+++..
T Consensus         6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            7888999999999999999998 89999765

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=87.73  E-value=0.2  Score=42.72  Aligned_cols=31  Identities=29%  Similarity=0.315  Sum_probs=26.1

Q ss_pred             EEEECCChHHHHHHHHHH-----HcCCCeEEEEcCCc
Q 043260          200 VAVFGLGAVGLGVMDRAR-----IQGAAKIIGIDKNP  231 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~-----~~G~~~Vi~~~~~~  231 (332)
                      |+|+|+|++|++++.++.     ..|. +|+++++.+
T Consensus        10 V~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~   45 (360)
T d1pn0a1          10 VLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS   45 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence            899999999999887774     4688 899998764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.64  E-value=0.28  Score=39.48  Aligned_cols=31  Identities=26%  Similarity=0.309  Sum_probs=28.1

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      |+|+|+|+.|+.++..+..+|. +|.+++..+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~-~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGL-KVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            7888999999999999999999 999998654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.49  E-value=0.28  Score=39.23  Aligned_cols=30  Identities=20%  Similarity=0.232  Sum_probs=27.7

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ++|+|+|+.|+.++..++.+|. +|.+++..
T Consensus         8 lvVIG~GpaGl~aA~~aa~~G~-~V~liE~~   37 (220)
T d1lvla1           8 LLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ   37 (220)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            7899999999999999999998 99999864

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=87.40  E-value=3.3  Score=34.64  Aligned_cols=100  Identities=18%  Similarity=0.166  Sum_probs=63.9

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc--chHHHHHHcCCCeeeCCCCC----------------
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP--CRKDKGEAFGMTDFINPDDE----------------  251 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~--~~~~~~~~lga~~v~~~~~~----------------  251 (332)
                      +...+.++++|+...+|.-|++++..++.+|..-+|++..+.  .|.+.++.+|+..+......                
T Consensus        54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~  133 (310)
T d1y7la1          54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASD  133 (310)
T ss_dssp             HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC
T ss_pred             HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhh
Confidence            344567777766667799999999999999985555554433  45667788888765322110                


Q ss_pred             -----------CCc-------hHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhc
Q 043260          252 -----------PNK-------SISELVKEMTHGTGVDYGFECTGVASLISEALEATK  290 (332)
Q Consensus       252 -----------~~~-------~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~  290 (332)
                                 .+.       ....++.+..++ .+|.|+.++|+...+.-....++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~-~~d~vv~~~G~Gg~~~G~~~~lk  189 (310)
T d1y7la1         134 PSRYVMLKQFENPANPQIHRETTGPEIWKDTDG-KVDVVVAGVGTGGSITGISRAIK  189 (310)
T ss_dssp             TTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTT-CEEEEEEECSSSHHHHHHHHHHH
T ss_pred             cCccccCCCCcchhhHHHhhhhHHHHHHHhcCC-CCCEEEecCcCCcchhHHHHHHH
Confidence                       000       011233334443 58999999998777776666665

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.35  E-value=1.5  Score=32.83  Aligned_cols=93  Identities=13%  Similarity=0.072  Sum_probs=53.0

Q ss_pred             CCCCEEEEECC--ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----HcCCCe-eeCCCCCCCchHHHHHHHhcCCC
Q 043260          195 EKGSSVAVFGL--GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGE----AFGMTD-FINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       195 ~~g~~vlV~G~--g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~----~lga~~-v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      -.|.+||=.++  |.+|+   .. ...|+++|+.++.+.+..+.++    .++... +....    .+..+.+...  ..
T Consensus        13 ~~g~~vlDl~~GtG~~~i---ea-~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~----~D~~~~l~~~--~~   82 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAI---EA-VSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK----MEAERAIDCL--TG   82 (152)
T ss_dssp             CCSCEEEEETCTTCHHHH---HH-HHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC----SCHHHHHHHB--CS
T ss_pred             CCCCeEEEcCCccCHHHH---HH-HHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhc----cccccccccc--cc
Confidence            36888888865  55555   33 3468889999999988776553    356532 21111    2334444433  33


Q ss_pred             CccEEEEcCCC-hHHHHHHHH------HhccCCcEEEE
Q 043260          268 GVDYGFECTGV-ASLISEALE------ATKLGKGKVMA  298 (332)
Q Consensus       268 g~d~vid~~g~-~~~~~~~~~------~l~~~~G~~v~  298 (332)
                      .||+||--..- .......++      .|+++ |.++.
T Consensus        83 ~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~-g~iii  119 (152)
T d2esra1          83 RFDLVFLDPPYAKETIVATIEALAAKNLLSEQ-VMVVC  119 (152)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHTTCEEEE-EEEEE
T ss_pred             ccceeEechhhccchHHHHHHHHHHCCCcCCC-eEEEE
Confidence            69999975431 122233333      35665 66654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.25  E-value=0.51  Score=35.82  Aligned_cols=37  Identities=19%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             CCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ..+++|+|+|+|-+|.=++..+...|++.|+++.+.+
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            3467899999999999999999999997888887654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.05  E-value=2.9  Score=30.00  Aligned_cols=94  Identities=12%  Similarity=0.073  Sum_probs=61.8

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcCCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECTGV  278 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~g~  278 (332)
                      .++|+|.|.+|..+++.++  +. +|++++.++++.+.++..|...+. .+.   .+ .+.+++. +-..++.++-++.+
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i~-Gd~---~~-~~~L~~a-~i~~A~~vi~~~~~   72 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFVH-GDP---TR-VSDLEKA-NVRGARAVIVNLES   72 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEEE-SCT---TS-HHHHHHT-TCTTCSEEEECCSS
T ss_pred             EEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCccccc-ccc---CC-HHHHHHh-hhhcCcEEEEeccc
Confidence            4788899999998887764  44 788889999998888888765443 322   22 2334442 33368999988887


Q ss_pred             hHH---HHHHHHHhccCCcEEEEEcCC
Q 043260          279 ASL---ISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       279 ~~~---~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      ...   +....+.+.+. .+++..-..
T Consensus        73 d~~n~~~~~~~r~~~~~-~~iia~~~~   98 (129)
T d2fy8a1          73 DSETIHCILGIRKIDES-VRIIAEAER   98 (129)
T ss_dssp             HHHHHHHHHHHHHHCSS-SCEEEECSS
T ss_pred             hhhhHHHHHHHHHHCCC-ceEEEEEcC
Confidence            432   33455566666 666655543

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.92  E-value=1.5  Score=34.35  Aligned_cols=108  Identities=19%  Similarity=0.169  Sum_probs=66.9

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHc----CCC-eeeCCCCCCCchHHHHHHHhc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAF----GMT-DFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~l----ga~-~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      +....++|++++=.++|.=|+.. .+++...-.+|+++|++++.++.+++.    +.. .+++..-   .++...+....
T Consensus        17 ~~l~~~~~~~~lD~t~G~Gghs~-~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f---~~~~~~~~~~~   92 (192)
T d1m6ya2          17 EFLKPEDEKIILDCTVGEGGHSR-AILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY---READFLLKTLG   92 (192)
T ss_dssp             HHHCCCTTCEEEETTCTTSHHHH-HHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG---GGHHHHHHHTT
T ss_pred             HhhCCCCCCEEEEecCCCcHHHH-HHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHH---hhHHHHHHHcC
Confidence            45577888866544445534443 444444334999999999998877653    322 2333332   44444454443


Q ss_pred             CCCCccEEEEcCCCh---------------HHHHHHHHHhccCCcEEEEEcCCC
Q 043260          265 HGTGVDYGFECTGVA---------------SLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       265 ~~~g~d~vid~~g~~---------------~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      . ..+|.|+--.|-.               ..+..+.+.|+++ |+++.+-...
T Consensus        93 ~-~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g-G~l~ii~f~s  144 (192)
T d1m6ya2          93 I-EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG-GRIVVISFHS  144 (192)
T ss_dssp             C-SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE-EEEEEEESSH
T ss_pred             C-CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC-Ceeeeecccc
Confidence            3 3788876544431               3567888899998 9998877654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.73  E-value=0.33  Score=38.50  Aligned_cols=30  Identities=30%  Similarity=0.289  Sum_probs=27.3

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      |+|+|+|+.|+.++..+...|. +|.+++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            7888999999999999999998 89999864

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.65  E-value=0.33  Score=38.00  Aligned_cols=32  Identities=13%  Similarity=0.052  Sum_probs=27.9

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      .+|+|+|+|+.|+.++..+...|. ++++++..
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~~   37 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGW   37 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CCEEECCS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-cEEEEEee
Confidence            579999999999999999999999 78888743

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.55  E-value=0.38  Score=38.62  Aligned_cols=33  Identities=18%  Similarity=0.207  Sum_probs=27.3

Q ss_pred             EEEEECCChHHHHHHHHHHHc--CCCeEEEEcCCcc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQ--GAAKIIGIDKNPC  232 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~--G~~~Vi~~~~~~~  232 (332)
                      +|+|+|+|+.|+.++..++..  |. +|++++..+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCC
Confidence            799999999999999876654  66 8999987653

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=86.45  E-value=0.35  Score=39.97  Aligned_cols=30  Identities=30%  Similarity=0.410  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      |+|+|+|.+|+.++..+...|. +|+++++.
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            7899999999999999999998 89999864

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.43  E-value=4.9  Score=29.72  Aligned_cols=94  Identities=15%  Similarity=0.171  Sum_probs=55.4

Q ss_pred             EEEEECC-ChHHHHHHHHHH-HcC-CCeEEEEcCCcchHHHHHHc---CC---CeeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          199 SVAVFGL-GAVGLGVMDRAR-IQG-AAKIIGIDKNPCRKDKGEAF---GM---TDFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~-~~G-~~~Vi~~~~~~~~~~~~~~l---ga---~~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      +|.|+|+ |.+|..++.++. ..+ ..++..+|..+.....+..+   ..   ...+...    .++. ++      .+.
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~----~~~~-~~------~~a   70 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE----DATP-AL------EGA   70 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSS----CCHH-HH------TTC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcC----CCcc-cc------CCC
Confidence            6889996 999988776554 444 35899999865443333332   11   1222211    2222 22      268


Q ss_pred             cEEEEcCCCh---------------HHHH---HHHHHhccCCcEEEEEcCCCC
Q 043260          270 DYGFECTGVA---------------SLIS---EALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       270 d~vid~~g~~---------------~~~~---~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      |+|+-+.|.+               ..+.   ..+.-.+|. +.++.+.++-+
T Consensus        71 DvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~-aivivvtNPvD  122 (145)
T d2cmda1          71 DVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPK-ACIGIITNPVN  122 (145)
T ss_dssp             SEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTT-SEEEECSSSHH
T ss_pred             CEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCC-cEEEEccCCch
Confidence            9999999864               1222   333344566 88888887753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=86.05  E-value=0.32  Score=40.09  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=30.3

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcc
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPC  232 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~  232 (332)
                      ++|||+|+ |-+|..++..+...|. +|++++++..
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~   38 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGH-PTFLLVREST   38 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCc
Confidence            67999998 9999999999999998 8999988654

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=86.00  E-value=0.82  Score=39.48  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=26.3

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      ++|||+|+ |-+|..++..+...|...|+.++.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            47999998 999999999888889855666664

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.97  E-value=3  Score=30.99  Aligned_cols=101  Identities=14%  Similarity=0.148  Sum_probs=52.3

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHHcCC-----------Ceee-CCCCCCCchHHHHHHHhc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRK-DKGEAFGM-----------TDFI-NPDDEPNKSISELVKEMT  264 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~-~~~~~lga-----------~~v~-~~~~~~~~~~~~~~~~~~  264 (332)
                      ++|.++|.|.+|...+.-+...|. .++ ..++.++. ++.++.+.           +.++ ...+  ..........+.
T Consensus         1 ekIg~IGlG~MG~~ma~~L~~~g~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~v~~~~~~l~   76 (156)
T d2cvza2           1 EKVAFIGLGAMGYPMAGHLARRFP-TLV-WNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPT--TREVYEVAEALY   76 (156)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSC-EEE-ECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSS--HHHHHHHHHHHT
T ss_pred             CeEEEEeHHHHHHHHHHHHHhCCC-EEE-EeCCHHHHHHHHHHcCCcccccccccceeEEEecccc--hhhhhhhhcccc
Confidence            468899999999888777776776 554 45555444 44444332           2211 1111  122222222222


Q ss_pred             CC-CCccEEEEcCC-ChHHHHHHHHHhccCCcEEEEEcCC
Q 043260          265 HG-TGVDYGFECTG-VASLISEALEATKLGKGKVMAIGAA  302 (332)
Q Consensus       265 ~~-~g~d~vid~~g-~~~~~~~~~~~l~~~~G~~v~~G~~  302 (332)
                      .. ..-.+++|++. +++...+..+.++..+.+++.....
T Consensus        77 ~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVs  116 (156)
T d2cvza2          77 PYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVS  116 (156)
T ss_dssp             TTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEE
T ss_pred             ccccccccccccccCCHHHHHHHHHHHHHcCCeEEecccc
Confidence            22 23356666544 4445556666666553556555443

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.94  E-value=0.71  Score=42.50  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=30.1

Q ss_pred             CCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          197 GSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       197 g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ..+|+|+|+|++|.-++.-+...|+++++++|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            36899999999999888888889999999998654

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.91  E-value=0.42  Score=40.26  Aligned_cols=44  Identities=18%  Similarity=0.243  Sum_probs=34.4

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHHcCC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPC--RKDKGEAFGM  242 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~--~~~~~~~lga  242 (332)
                      ++|||+|+ |-+|..++..+...|. +|+++++...  ..+.++.++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~~   47 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGI   47 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhcc
Confidence            57999998 9999999998888899 9999987543  3345555554

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.85  E-value=0.38  Score=40.42  Aligned_cols=31  Identities=42%  Similarity=0.592  Sum_probs=27.9

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      |+|+|+|..|+.++..+...|. +|++++..+
T Consensus        19 VlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~   49 (308)
T d1y0pa2          19 VVVVGSGGAGFSAAISATDSGA-KVILIEKEP   49 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            8999999999999999999998 899998653

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=85.79  E-value=0.51  Score=38.88  Aligned_cols=62  Identities=21%  Similarity=0.327  Sum_probs=38.4

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      ++|||+|+ |-+|..++..+...|  +++.+++....      +    ..|..+  .+.+.+.+++    .++|+||+++
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g--~~v~~~~~~~~------~----~~Dl~~--~~~~~~~i~~----~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG--NLIALDVHSKE------F----CGDFSN--PKGVAETVRK----LRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS--EEEEECTTCSS------S----CCCTTC--HHHHHHHHHH----HCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC--CEEEEECCCcc------c----cCcCCC--HHHHHHHHHH----cCCCEEEEec
Confidence            47999998 999999988887766  45665554321      1    112222  1333333433    2689999988


Q ss_pred             C
Q 043260          277 G  277 (332)
Q Consensus       277 g  277 (332)
                      +
T Consensus        63 a   63 (298)
T d1n2sa_          63 A   63 (298)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.76  E-value=0.28  Score=39.37  Aligned_cols=34  Identities=12%  Similarity=0.107  Sum_probs=28.0

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCC------eEEEEcCCc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAA------KIIGIDKNP  231 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~------~Vi~~~~~~  231 (332)
                      -+|+|+|+|+.|+.++..+...|..      +|.+.+..+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            3799999999999999988887731      688888765

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=85.66  E-value=0.77  Score=38.00  Aligned_cols=34  Identities=29%  Similarity=0.461  Sum_probs=30.0

Q ss_pred             CCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEc
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGID  228 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~  228 (332)
                      --.|.+|+|.|-|.+|..+++++...|+ +|+.+.
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavs   66 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLS   66 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEe
Confidence            3478999999999999999999999999 777664

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.57  E-value=0.57  Score=36.81  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=32.1

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      .+.+|.|+|.|.+|...+++++.+|. +|+..++..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIEN   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccc
Confidence            57899999999999999999999999 999998754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.52  E-value=0.41  Score=40.89  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=26.9

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCC-CeEEEEcCCc
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGA-AKIIGIDKNP  231 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~-~~Vi~~~~~~  231 (332)
                      ++|+|+|+|..|++++..++..|. .+|++.++++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            579999999999988866655542 3899998875

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=85.51  E-value=0.57  Score=38.65  Aligned_cols=100  Identities=11%  Similarity=0.121  Sum_probs=62.3

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCC-CeeeCCCCCCCchHHHHHHHhc
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGM-TDFINPDDEPNKSISELVKEMT  264 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga-~~v~~~~~~~~~~~~~~~~~~~  264 (332)
                      +..++....+||=+|+|. |..+..+++..---+++++|. ++-.+.+    ++.|. +.+....    .++   ...+ 
T Consensus        75 ~~~d~~~~~~vlDvG~G~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~----~d~---~~~~-  144 (256)
T d1qzza2          75 DAYDWSAVRHVLDVGGGN-GGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAE----GDF---FKPL-  144 (256)
T ss_dssp             HTSCCTTCCEEEEETCTT-SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE----CCT---TSCC-
T ss_pred             hcCCCccCCEEEEECCCC-CHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeee----eec---cccc-
Confidence            445667778999999876 888899999874338999996 3333333    34443 2221111    111   1112 


Q ss_pred             CCCCccEEEEcC-----CCh---HHHHHHHHHhccCCcEEEEEcC
Q 043260          265 HGTGVDYGFECT-----GVA---SLISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       265 ~~~g~d~vid~~-----g~~---~~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      + .++|+|+-.-     +.+   ..+..+.+.|+|+ |+++++..
T Consensus       145 p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkpg-G~llI~d~  187 (256)
T d1qzza2         145 P-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPG-GRLLVLDR  187 (256)
T ss_dssp             S-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             c-ccchhhhccccccccCcHHHHHHHHHHHhhcCCc-ceeEEEEe
Confidence            2 2689988632     222   3478899999998 99998865

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.43  E-value=0.96  Score=38.44  Aligned_cols=31  Identities=26%  Similarity=0.187  Sum_probs=27.6

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      ++|||+|+ |-+|..++..+...|. +|+++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            68999998 9999999999999998 8998863

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=85.43  E-value=0.72  Score=34.46  Aligned_cols=38  Identities=16%  Similarity=0.201  Sum_probs=31.6

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKD  235 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~  235 (332)
                      .+|.|+|+|.+|..++.++...+..+++.+|.++++.+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~   39 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQ   39 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccch
Confidence            47889999999998887777777768999998887654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=85.37  E-value=0.4  Score=36.72  Aligned_cols=33  Identities=24%  Similarity=0.313  Sum_probs=26.5

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCC-eEEEEc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAA-KIIGID  228 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~-~Vi~~~  228 (332)
                      .+++|+|+|+|.+|.-++..++.+|.. +|+...
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~   35 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG   35 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEec
Confidence            468899999999999999999999972 344433

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.98  E-value=0.47  Score=37.58  Aligned_cols=30  Identities=30%  Similarity=0.378  Sum_probs=27.2

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ++|+|+|+.|+.++..+..+|. +|.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGA-RAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            7888999999999999999998 89998754

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.98  E-value=0.81  Score=35.99  Aligned_cols=69  Identities=22%  Similarity=0.348  Sum_probs=41.8

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEc
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGA-AKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFEC  275 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~-~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~  275 (332)
                      ++|||+|+ |-+|..++..+...|. .+|+...+++..       ....+. ...   .++.+....+  ....|.|+.+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-------~~~~~~-~~~---~d~~~~~~~~--~~~~d~vi~~   69 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------EHPRLD-NPV---GPLAELLPQL--DGSIDTAFCC   69 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------CCTTEE-CCB---SCHHHHGGGC--CSCCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-------hccccc-ccc---cchhhhhhcc--ccchheeeee
Confidence            68999998 9999999998888885 256655544311       011111 111   3333333332  2258999999


Q ss_pred             CCCh
Q 043260          276 TGVA  279 (332)
Q Consensus       276 ~g~~  279 (332)
                      +|..
T Consensus        70 ~g~~   73 (212)
T d2a35a1          70 LGTT   73 (212)
T ss_dssp             CCCC
T ss_pred             eeee
Confidence            8763

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.92  E-value=0.58  Score=32.73  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=19.0

Q ss_pred             eeEEEEEeCCCCC----------CCCCCCEEEee
Q 043260           75 GVGMVESIGDEVK----------ELKEGDIVIPT   98 (332)
Q Consensus        75 ~~G~Vv~vG~~v~----------~~~vGdrV~~~   98 (332)
                      ..|+|+++|++..          .+++||+|+..
T Consensus        38 ~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~   71 (99)
T d1p3ha_          38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYS   71 (99)
T ss_dssp             EEEEEEEECCCEECSSSSCEECCSCCTTCEEEEE
T ss_pred             eEEEEEEECCceEcCCCCEecCCeeecCCEEEEc
Confidence            4699999998752          38899999843

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.67  E-value=9.2  Score=31.36  Aligned_cols=101  Identities=17%  Similarity=0.119  Sum_probs=62.6

Q ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcC--CcchHHHHHHcCCCeeeCCC------------------
Q 043260          190 KEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK--NPCRKDKGEAFGMTDFINPD------------------  249 (332)
Q Consensus       190 ~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~--~~~~~~~~~~lga~~v~~~~------------------  249 (332)
                      +...++++.+|+..++|.-|.+++..++.+|.+-++++..  ++.+.+.++.+|++-+....                  
T Consensus        54 ~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~~~~~~~~~~~~~~~~~~  133 (302)
T d1fcja_          54 KRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASD  133 (302)
T ss_dssp             HHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHTS
T ss_pred             HcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccccccchhhhHHHHHHhhh
Confidence            4456677777666677999999999999999854444443  33456677778876442110                  


Q ss_pred             ---------CCCC-------chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhcc
Q 043260          250 ---------DEPN-------KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKL  291 (332)
Q Consensus       250 ---------~~~~-------~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~  291 (332)
                               ....       ..+..++.+..++ .+|.||-++|+...+.-....++.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~-~~d~vv~~vG~GG~~~Gi~~~lk~  190 (302)
T d1fcja_         134 PQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDG-QVDVFISGVGTGGTLTGVTRYIKG  190 (302)
T ss_dssp             TTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTT-CCCEEEEECSSSHHHHHHHHHHHT
T ss_pred             ccceeccccccccchhHHHHhHHHHHHHHhcCC-CCCEEEEcCCCccccccceeeeee
Confidence                     0001       1122334444443 589999999987676666655543

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.40  E-value=0.41  Score=35.99  Aligned_cols=93  Identities=18%  Similarity=0.182  Sum_probs=54.3

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEE
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQG--AAKIIGIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFE  274 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G--~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid  274 (332)
                      .+|.|+|+ |-+|+-.++++....  ..++..+.++...-+... ....... ..+         +. ...-.+.|++|-
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~-~~~~~~~-~~~---------~~-~~~~~~~d~vf~   70 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-FAESSLR-VGD---------VD-SFDFSSVGLAFF   70 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-ETTEEEE-CEE---------GG-GCCGGGCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCccee-eccccch-hcc---------ch-hhhhccceEEEe
Confidence            57999999 999999999997543  336666544322111111 1111111 100         00 011236899999


Q ss_pred             cCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          275 CTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       275 ~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +.++.......-+.+..+ .+++..+...
T Consensus        71 a~p~~~s~~~~~~~~~~g-~~VID~Ss~f   98 (144)
T d2hjsa1          71 AAAAEVSRAHAERARAAG-CSVIDLSGAL   98 (144)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CEEEETTCTT
T ss_pred             cCCcchhhhhccccccCC-ceEEeechhh
Confidence            999865556666677776 7778776543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.38  E-value=0.4  Score=38.50  Aligned_cols=30  Identities=23%  Similarity=0.306  Sum_probs=27.2

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      |+|+|+|+.|+.++..+..+|. +|.+++..
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~-kV~viE~~   35 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDK-KVMVLDFV   35 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCC-CEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            7889999999999999999999 89999843

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=83.74  E-value=0.11  Score=40.20  Aligned_cols=90  Identities=21%  Similarity=0.261  Sum_probs=51.0

Q ss_pred             EEEEECC-ChHHHHHHHHHHHc-CCCeEEE-EcCCcchH---HHHHHcCCC----eeeCCCCCCCchHHHHHHHhcCCCC
Q 043260          199 SVAVFGL-GAVGLGVMDRARIQ-GAAKIIG-IDKNPCRK---DKGEAFGMT----DFINPDDEPNKSISELVKEMTHGTG  268 (332)
Q Consensus       199 ~vlV~G~-g~vG~~~~~la~~~-G~~~Vi~-~~~~~~~~---~~~~~lga~----~v~~~~~~~~~~~~~~~~~~~~~~g  268 (332)
                      +|+|+|+ |-+|.++++++... ++ +++. +++.....   +.-+-.|..    .+.+.           +.+.  -..
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~-~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~-----------~~~~--~~~   71 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKTGVTVQSS-----------LDAV--KDD   71 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESC-----------STTT--TTS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecccchhccchhhhhhccccCCceeecc-----------HHHH--hcc
Confidence            5788898 99999999988876 45 4443 33322111   000001110    11111           1111  125


Q ss_pred             ccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          269 VDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       269 ~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      +|++||.+.- +.....++..... +.=+.+|.++-
T Consensus        72 ~DViIDFs~p-~~~~~~~~~a~~~-~~~~ViGTTG~  105 (162)
T d1diha1          72 FDVFIDFTRP-EGTLNHLAFCRQH-GKGMVIGTTGF  105 (162)
T ss_dssp             CSEEEECSCH-HHHHHHHHHHHHT-TCEEEECCCCC
T ss_pred             cceEEEeccH-HHHHHHHHHHHhc-cceeEEecCCC
Confidence            7999998665 4666666776666 78888887763

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=83.53  E-value=0.51  Score=39.98  Aligned_cols=32  Identities=38%  Similarity=0.582  Sum_probs=28.1

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      -|+|+|+|..|+.++..+...|. +|++++..+
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGA-NVILVDKAP   52 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            38899999999999999999998 899998643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.49  E-value=0.98  Score=33.82  Aligned_cols=46  Identities=9%  Similarity=0.063  Sum_probs=37.5

Q ss_pred             hhHHHHHHhhCCCCCCEEEEE--CCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          183 SGFGAAWKEFKVEKGSSVAVF--GLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       183 ta~~al~~~~~~~~g~~vlV~--G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      |....+  ..+..+++.++|+  |+|-+|+.+++.+..+|. +|.++++.+
T Consensus        27 t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          27 TPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             CHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            455543  3567888888887  779999999999999998 999998765

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.43  E-value=1.7  Score=31.43  Aligned_cols=61  Identities=21%  Similarity=0.175  Sum_probs=47.9

Q ss_pred             HHhhCCCCCCEEEEE-CCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHHHHcCCCeeeCCC
Q 043260          189 WKEFKVEKGSSVAVF-GLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKGEAFGMTDFINPD  249 (332)
Q Consensus       189 ~~~~~~~~g~~vlV~-G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  249 (332)
                      .+.+++..-+.+++. ..-..-+++.++++.+|..++++...+++..+.++++|++.++++.
T Consensus        58 l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~  119 (132)
T d1lssa_          58 LEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE  119 (132)
T ss_dssp             HHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred             hhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHH
Confidence            366777777766654 3445567888899999988899888888888999999999998763

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=82.98  E-value=2.8  Score=32.12  Aligned_cols=101  Identities=22%  Similarity=0.237  Sum_probs=59.0

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcC-Cc--chHHHHHHc----C---CC------e-eeCCCCC---CCchHHH
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDK-NP--CRKDKGEAF----G---MT------D-FINPDDE---PNKSISE  258 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~-~~--~~~~~~~~l----g---a~------~-v~~~~~~---~~~~~~~  258 (332)
                      +|.|.|=|-+|.++.+.+...+. +|+.+-. ..  +.+..+-++    |   .+      . +++.+.-   ...+. +
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~-~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p-~   79 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGA-QVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKP-E   79 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSG-G
T ss_pred             eEEEECCcHHHHHHHHHHHhCCC-cEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCCh-H
Confidence            57899999999999999988888 6776643 22  333333332    2   10      0 1111000   00000 0


Q ss_pred             HHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          259 LVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       259 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .+..  ...++|+||||+|--.....+...+..+ ..-|++..+..
T Consensus        80 ~i~W--~~~gvD~ViEcTG~f~~~~~~~~hl~~g-akkViisaP~~  122 (169)
T d1dssg1          80 NIPW--SKAGAEYIVESTGVFTTIEKASAHFKGG-AKKVIISAPSA  122 (169)
T ss_dssp             GCCH--HHHTCCEEEECSSSCCSHHHHGGGGTTT-CSEEEESSCCS
T ss_pred             HCCc--cccCCCEEEecCceEcCHHHHHHHHhcC-CceEeecCCcc
Confidence            1100  0227999999999765667777788876 77777776654

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.95  E-value=6.6  Score=30.90  Aligned_cols=106  Identities=12%  Similarity=-0.007  Sum_probs=62.4

Q ss_pred             HHHHHHhhCCCCCCEEEEE-CC---ChHHHHHHHHHHHcCCCeEEEEcCCcch-------HHHHHHcCCCeeeCCCCCCC
Q 043260          185 FGAAWKEFKVEKGSSVAVF-GL---GAVGLGVMDRARIQGAAKIIGIDKNPCR-------KDKGEAFGMTDFINPDDEPN  253 (332)
Q Consensus       185 ~~al~~~~~~~~g~~vlV~-G~---g~vG~~~~~la~~~G~~~Vi~~~~~~~~-------~~~~~~lga~~v~~~~~~~~  253 (332)
                      +..+.+...-.+..+|+|+ |.   |+=|++++..++..|+ +|.++-..+++       .++.++++...+ ....   
T Consensus        28 a~~i~~~~~~~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~-~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---  102 (211)
T d2ax3a2          28 VLAMEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLGVVK-DVLVVFLGKKKTPDCEYNYGLYKKFGGKVV-EQFE---  102 (211)
T ss_dssp             HHHHHHHHSCCTTCEEEEEECSSHHHHHHHHHHHHHTTTSS-EEEEEECCSSCCHHHHHHHHHHHHTTCCEE-SCCC---
T ss_pred             HHHHHHhcccccCCcEEEEECCCCCchhHHHHHHHHHhcCC-eeEEEecCccCCcHHHHHHHHHHHcCCccc-cccc---
Confidence            3334343333345567665 53   6778999999998998 77766544332       223345554433 2211   


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCC-C------hHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          254 KSISELVKEMTHGTGVDYGFECTG-V------ASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g-~------~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ..      .   -..+|+|||+.= .      ...+..+++.+...+..++.+-.+++
T Consensus       103 ~~------~---~~~~dlIIDal~G~Gl~~~l~~~~~~~i~~iN~~~~~vlsiDiPSG  151 (211)
T d2ax3a2         103 PS------I---LNEFDVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPSG  151 (211)
T ss_dssp             GG------G---GGGCSEEEEESCCTTCCSCCCHHHHHHHHHHHHSCCEEEEESSCTT
T ss_pred             cc------c---ccCceEEEEecccCCccccchHHHHHHHHHHHhhccceeeeccCcc
Confidence            11      0   125899999863 2      14567777777776456778877766

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=82.79  E-value=2.1  Score=34.90  Aligned_cols=73  Identities=14%  Similarity=0.186  Sum_probs=42.8

Q ss_pred             EEEECC-ChHHHHHHHHHHHcCCCeEEEEcC--CcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCCCCccEEEEcC
Q 043260          200 VAVFGL-GAVGLGVMDRARIQGAAKIIGIDK--NPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHGTGVDYGFECT  276 (332)
Q Consensus       200 vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~--~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~~g~d~vid~~  276 (332)
                      |||+|+ |-+|..++..+...|..+|++++.  +..+.....+.-.....+.     .+....+.....-...+.|+...
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~a   76 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDK-----EDFLIQIMAGEEFGDVEAIFHEG   76 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEH-----HHHHHHHHTTCCCSSCCEEEECC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccchhhhccc-----hHHHHHHhhhhcccchhhhhhhc
Confidence            789988 999999888888889657888863  2223333344333223222     23333333333334578888765


Q ss_pred             C
Q 043260          277 G  277 (332)
Q Consensus       277 g  277 (332)
                      +
T Consensus        77 a   77 (307)
T d1eq2a_          77 A   77 (307)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.60  E-value=6.6  Score=29.40  Aligned_cols=70  Identities=16%  Similarity=0.064  Sum_probs=41.6

Q ss_pred             EEEEECCChHH--HHHHHHHHHc---CCCeEEEEcCCcchHHHHHHc------CCCeeeCCCCCCCchHHHHHHHhcCCC
Q 043260          199 SVAVFGLGAVG--LGVMDRARIQ---GAAKIIGIDKNPCRKDKGEAF------GMTDFINPDDEPNKSISELVKEMTHGT  267 (332)
Q Consensus       199 ~vlV~G~g~vG--~~~~~la~~~---G~~~Vi~~~~~~~~~~~~~~l------ga~~v~~~~~~~~~~~~~~~~~~~~~~  267 (332)
                      +|.|+|+|.+|  .+...+++..   ...++...|.+++|.+....+      ....+...     .+..+++      .
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t-----~~~~~~l------~   70 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLIS-----DTFEGAV------V   70 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEEC-----SSHHHHH------T
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEe-----cCccccc------C
Confidence            68899998666  3333344432   235899999999887644332      12233222     2222333      2


Q ss_pred             CccEEEEcCCCh
Q 043260          268 GVDYGFECTGVA  279 (332)
Q Consensus       268 g~d~vid~~g~~  279 (332)
                      +.|+|+-+.+.+
T Consensus        71 ~aDvVVita~~~   82 (162)
T d1up7a1          71 DAKYVIFQFRPG   82 (162)
T ss_dssp             TCSEEEECCCTT
T ss_pred             CCCEEEEecccC
Confidence            689999998854

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=82.48  E-value=2.8  Score=31.98  Aligned_cols=96  Identities=21%  Similarity=0.223  Sum_probs=56.5

Q ss_pred             EEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHH--HHHc----CC--Cee----------------eCCCCCCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDK--GEAF----GM--TDF----------------INPDDEPN  253 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~--~~~l----ga--~~v----------------~~~~~~~~  253 (332)
                      +|.|.|-|-+|.++.+++.... . +|+++.....-..+  +-++    |.  ..+                .+.++  +
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i-~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~--p   79 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDI-EIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD--P   79 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS--G
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCe-EEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCC--h
Confidence            5788899999999999887664 4 67776543332222  2221    20  011                11111  1


Q ss_pred             chHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          254 KSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       254 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      .+    +..  +..++|+||||+|--.....+...+..+ ..-|++..+..
T Consensus        80 ~~----i~W--~~~gvDiViEcTG~f~t~~~~~~hl~~g-akkViiSaP~~  123 (166)
T d1gado1          80 AN----LKW--DEVGVDVVAEATGLFLTDETARKHITAG-AKKVVMTGPSK  123 (166)
T ss_dssp             GG----GCH--HHHTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCCS
T ss_pred             HH----CCc--cccCCCEEEEccccccCHHHHHHHhcCC-CceEEeecccc
Confidence            11    100  0127999999999755566777788776 76677776654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=82.37  E-value=0.6  Score=39.14  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=26.6

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ++|||+|+ |-+|..++..+...|. .+++++..
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT-EEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecCc
Confidence            47999998 9999999999988898 67766543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.33  E-value=3.3  Score=34.97  Aligned_cols=99  Identities=21%  Similarity=0.255  Sum_probs=60.1

Q ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHcC-CCeEEEEcCCcchHHHH----HHcCCCeeeCCCCCCCchHHHHHHHhcC
Q 043260          191 EFKVEKGSSVAVFGLGAVGLGVMDRARIQG-AAKIIGIDKNPCRKDKG----EAFGMTDFINPDDEPNKSISELVKEMTH  265 (332)
Q Consensus       191 ~~~~~~g~~vlV~G~g~vG~~~~~la~~~G-~~~Vi~~~~~~~~~~~~----~~lga~~v~~~~~~~~~~~~~~~~~~~~  265 (332)
                      ..+.++|++||=.-|++ |-=+.+++..++ -..|++.|.++.|.+.+    +.+|...++....   +..  .+ ... 
T Consensus       111 ~l~~~~g~~vlD~CAap-GgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~---d~~--~~-~~~-  182 (313)
T d1ixka_         111 ALDPKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS---SSL--HI-GEL-  182 (313)
T ss_dssp             HHCCCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS---CGG--GG-GGG-
T ss_pred             cccCCccceeeecccch-hhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccc---ccc--cc-ccc-
Confidence            34789999987764333 223344454443 23799999999988654    5577765443332   111  01 111 


Q ss_pred             CCCccEEEE---cCCCh-------------------------HHHHHHHHHhccCCcEEEE
Q 043260          266 GTGVDYGFE---CTGVA-------------------------SLISEALEATKLGKGKVMA  298 (332)
Q Consensus       266 ~~g~d~vid---~~g~~-------------------------~~~~~~~~~l~~~~G~~v~  298 (332)
                      ...||.|+-   |+|++                         ..+..+++.++++ |++|-
T Consensus       183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~g-G~lVY  242 (313)
T d1ixka_         183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG-GILVY  242 (313)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCC-cEEEE
Confidence            226887776   56553                         4578899999998 87653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=82.29  E-value=0.56  Score=39.72  Aligned_cols=31  Identities=42%  Similarity=0.666  Sum_probs=27.8

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      |+|+|+|..|+.++..+...|. +|++++..+
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~-~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGA-KVILLEKEP   56 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8999999999999999988998 899998654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.23  E-value=7.1  Score=29.48  Aligned_cols=70  Identities=14%  Similarity=0.061  Sum_probs=40.5

Q ss_pred             EEEEECCChHH--HHHHHHHHHcC---CCeEEEEcCCcch--HHHH--------HHcCCC-eeeCCCCCCCchHHHHHHH
Q 043260          199 SVAVFGLGAVG--LGVMDRARIQG---AAKIIGIDKNPCR--KDKG--------EAFGMT-DFINPDDEPNKSISELVKE  262 (332)
Q Consensus       199 ~vlV~G~g~vG--~~~~~la~~~G---~~~Vi~~~~~~~~--~~~~--------~~lga~-~v~~~~~~~~~~~~~~~~~  262 (332)
                      +|.|+|+|.+|  .+...+++...   ..+++.+|.++++  .+..        .+++.+ .+...     .+..+++  
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~-----td~~~al--   75 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLT-----LDRRRAL--   75 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEE-----SCHHHHH--
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeec-----CCchhhc--
Confidence            68899987554  55555555432   2489999988754  3322        223443 23222     2222222  


Q ss_pred             hcCCCCccEEEEcCCCh
Q 043260          263 MTHGTGVDYGFECTGVA  279 (332)
Q Consensus       263 ~~~~~g~d~vid~~g~~  279 (332)
                          .+.|+|+.+++.+
T Consensus        76 ----~gaDvVv~ta~~~   88 (169)
T d1s6ya1          76 ----DGADFVTTQFRVG   88 (169)
T ss_dssp             ----TTCSEEEECCCTT
T ss_pred             ----CCCCEEEEccccC
Confidence                2689999999854

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=82.20  E-value=0.73  Score=36.87  Aligned_cols=94  Identities=14%  Similarity=0.118  Sum_probs=61.6

Q ss_pred             CCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCC--eeeCCCCCCCchHHHHHHHhcCCCCc
Q 043260          196 KGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMT--DFINPDDEPNKSISELVKEMTHGTGV  269 (332)
Q Consensus       196 ~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~--~v~~~~~~~~~~~~~~~~~~~~~~g~  269 (332)
                      ++++++=+|+|+ |.=.+-+|-..--.+++.++++.+|...+    +++|.+  ++++.+.   +       +......|
T Consensus        65 ~~~~ilDiGsGa-G~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~---E-------~~~~~~~f  133 (207)
T d1jsxa_          65 QGERFIDVGTGP-GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV---E-------EFPSEPPF  133 (207)
T ss_dssp             CSSEEEEETCTT-TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT---T-------TSCCCSCE
T ss_pred             cCCceeeeeccC-CceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccch---h-------hhcccccc
Confidence            467888888754 54445555555434999999999998765    457865  5555544   2       22233468


Q ss_pred             cEEEE-cCCChH-HHHHHHHHhccCCcEEEEEcC
Q 043260          270 DYGFE-CTGVAS-LISEALEATKLGKGKVMAIGA  301 (332)
Q Consensus       270 d~vid-~~g~~~-~~~~~~~~l~~~~G~~v~~G~  301 (332)
                      |+|+. +++..+ .+..+...++++ |+++.+=.
T Consensus       134 D~V~sRA~~~~~~ll~~~~~~l~~~-g~~~~~KG  166 (207)
T d1jsxa_         134 DGVISRAFASLNDMVSWCHHLPGEQ-GRFYALKG  166 (207)
T ss_dssp             EEEECSCSSSHHHHHHHHTTSEEEE-EEEEEEES
T ss_pred             ceehhhhhcCHHHHHHHHHHhcCCC-cEEEEECC
Confidence            98885 555433 456677778887 99998843

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=82.00  E-value=3.7  Score=31.36  Aligned_cols=96  Identities=21%  Similarity=0.199  Sum_probs=55.3

Q ss_pred             EEEEECCChHHHHHHHHHHHc---CCCeEEEEcCCc--chHHHHHHc----CC---------Ce-e--------eCCCCC
Q 043260          199 SVAVFGLGAVGLGVMDRARIQ---GAAKIIGIDKNP--CRKDKGEAF----GM---------TD-F--------INPDDE  251 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~---G~~~Vi~~~~~~--~~~~~~~~l----ga---------~~-v--------~~~~~~  251 (332)
                      +|.|.|-|-+|.++.+.+...   .. +|+.+....  +.+..+-++    |.         +. +        .+.++ 
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i-~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~-   79 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDI-EVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD-   79 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTC-EEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS-
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCE-EEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCC-
Confidence            688999999999999887653   35 677664322  223323221    21         00 0        11111 


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                       +.    .+...  ..|+|+||||+|--.....+...+..+ ..-|++..+..
T Consensus        80 -p~----~i~W~--~~gvD~ViEcTG~f~t~~~~~~hl~~G-akkViiSAP~k  124 (169)
T d1hdgo1          80 -PS----KLPWK--DLGVDFVIESTGVFRNREKAELHLQAG-AKKVIITAPAK  124 (169)
T ss_dssp             -GG----GSCHH--HHTCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCCB
T ss_pred             -hh----hCCcc--ccCCCEEEEecceeccccchhhhccCC-CceEEEecccC
Confidence             11    11000  126999999999755566777778776 66666666653

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=81.86  E-value=0.58  Score=39.64  Aligned_cols=31  Identities=26%  Similarity=0.310  Sum_probs=27.8

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      |||+|+|..|+.++.-|...|. +|++++...
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGL-STIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            8899999999999999999999 899998654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.82  E-value=0.54  Score=34.75  Aligned_cols=38  Identities=18%  Similarity=0.250  Sum_probs=27.7

Q ss_pred             CCCCCEEEEECCChHHHHHHHHH----HHcCCCeEEEEcCCcc
Q 043260          194 VEKGSSVAVFGLGAVGLGVMDRA----RIQGAAKIIGIDKNPC  232 (332)
Q Consensus       194 ~~~g~~vlV~G~g~vG~~~~~la----~~~G~~~Vi~~~~~~~  232 (332)
                      ++++++++|+|+|.+|.-++..+    +..|. +|+++..++.
T Consensus        34 ~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~~   75 (137)
T d1m6ia2          34 SREVKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKG   75 (137)
T ss_dssp             HHHCSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             hhcCCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEeccccc
Confidence            35678999999999996544433    45688 8999876543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.53  E-value=0.72  Score=40.42  Aligned_cols=33  Identities=21%  Similarity=0.432  Sum_probs=26.1

Q ss_pred             EEEEECCChHHHHHHHHHHH------cCCCeEEEEcCCcc
Q 043260          199 SVAVFGLGAVGLGVMDRARI------QGAAKIIGIDKNPC  232 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~------~G~~~Vi~~~~~~~  232 (332)
                      -|+|+|+|+.|++++..++.      .|. +|.++++..+
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAAH   72 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCCC
Confidence            38899999999887665554      688 9999997653

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.52  E-value=3.1  Score=33.75  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=27.2

Q ss_pred             CCCCEEEEECCChHHHHHHHHHH-HcCCCeEEEEc
Q 043260          195 EKGSSVAVFGLGAVGLGVMDRAR-IQGAAKIIGID  228 (332)
Q Consensus       195 ~~g~~vlV~G~g~vG~~~~~la~-~~G~~~Vi~~~  228 (332)
                      -+|.+|+|.|-|.+|..+++++. ..|. +|+.+.
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~-kvv~vs   63 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGM-KVVAVS   63 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCc-ceeecc
Confidence            37899999999999999998775 5688 777654

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=81.46  E-value=3  Score=35.71  Aligned_cols=31  Identities=23%  Similarity=0.246  Sum_probs=24.9

Q ss_pred             CCEEEEECC-ChHHHHHHH-HHHHcCCCeEEEEc
Q 043260          197 GSSVAVFGL-GAVGLGVMD-RARIQGAAKIIGID  228 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~-la~~~G~~~Vi~~~  228 (332)
                      +.+|||+|+ |-+|..++. |++..|. +|+++|
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~-~V~~~D   34 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVD   34 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence            578999998 999977665 5566788 999986

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=81.44  E-value=0.62  Score=38.61  Aligned_cols=32  Identities=22%  Similarity=0.383  Sum_probs=26.3

Q ss_pred             EEEEECCChHHHHHHHH-HHHcCCCeEEEEcCCc
Q 043260          199 SVAVFGLGAVGLGVMDR-ARIQGAAKIIGIDKNP  231 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~l-a~~~G~~~Vi~~~~~~  231 (332)
                      -|+|+|+|+.|+.++.. ++..|. +|.+++..+
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   67 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCC-eEEEEecCC
Confidence            38999999999988765 555799 999999764

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.34  E-value=8.2  Score=32.27  Aligned_cols=56  Identities=27%  Similarity=0.259  Sum_probs=38.9

Q ss_pred             HhhCCCCCCEEEEE-CCChHHHHHHHHHHHcCCCeEEEEc--CCcchHHHHHHcCCCee
Q 043260          190 KEFKVEKGSSVAVF-GLGAVGLGVMDRARIQGAAKIIGID--KNPCRKDKGEAFGMTDF  245 (332)
Q Consensus       190 ~~~~~~~g~~vlV~-G~g~vG~~~~~la~~~G~~~Vi~~~--~~~~~~~~~~~lga~~v  245 (332)
                      +...++++.+.+|. .+|..|++++..++.+|..-++++.  .++.|++.++.+|++.+
T Consensus        57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi  115 (320)
T d1z7wa1          57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELV  115 (320)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred             HcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceE
Confidence            34455666555555 5599999999999999983333333  23467778888998754

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.23  E-value=0.75  Score=34.80  Aligned_cols=93  Identities=22%  Similarity=0.139  Sum_probs=55.8

Q ss_pred             CCEEEEECC-ChHHHHHHHHHHHcCC--CeEEEEcCCcchHHHHHHcCCC-eeeCCCCCCCchHHHHHHHhcCCCCccEE
Q 043260          197 GSSVAVFGL-GAVGLGVMDRARIQGA--AKIIGIDKNPCRKDKGEAFGMT-DFINPDDEPNKSISELVKEMTHGTGVDYG  272 (332)
Q Consensus       197 g~~vlV~G~-g~vG~~~~~la~~~G~--~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~~~~~~~~~g~d~v  272 (332)
                      |=+|.|+|+ |-+|.-.++++.....  .++....++...-+........ ...+..+   .          .-...|++
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~---~----------~~~~~d~~   67 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTE---T----------AFEGVDIA   67 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCT---T----------TTTTCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccch---h----------hhhhhhhh
Confidence            347999999 9999999999988743  3444443321110000000100 1111111   1          12358999


Q ss_pred             EEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          273 FECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       273 id~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                      +-+.+.........+....+ -+++..+...
T Consensus        68 f~~~~~~~s~~~~~~~~~~~-~~VIDlSsdf   97 (154)
T d2gz1a1          68 LFSAGSSTSAKYAPYAVKAG-VVVVDNTSYF   97 (154)
T ss_dssp             EECSCHHHHHHHHHHHHHTT-CEEEECSSTT
T ss_pred             hhccCccchhhHHhhhcccc-ceehhcChhh
Confidence            99999876667777777877 8888888654

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.16  E-value=1.2  Score=37.79  Aligned_cols=33  Identities=18%  Similarity=0.415  Sum_probs=29.3

Q ss_pred             CCCEEEEECC-ChHHHHHHHHHHHcCCCeEEEEcC
Q 043260          196 KGSSVAVFGL-GAVGLGVMDRARIQGAAKIIGIDK  229 (332)
Q Consensus       196 ~g~~vlV~G~-g~vG~~~~~la~~~G~~~Vi~~~~  229 (332)
                      .-+++||+|+ |-+|..++..+...|. +|+++++
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            3467999998 9999999999999999 9999975

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=80.71  E-value=2  Score=32.97  Aligned_cols=95  Identities=20%  Similarity=0.175  Sum_probs=56.9

Q ss_pred             EEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHHc----CC-C-----------------eeeCCCCCCCc
Q 043260          199 SVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCR--KDKGEAF----GM-T-----------------DFINPDDEPNK  254 (332)
Q Consensus       199 ~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~--~~~~~~l----ga-~-----------------~v~~~~~~~~~  254 (332)
                      +|.|.|-|-+|.++.+++...+. +|+++.....-  ...+-++    |- .                 .+...++  + 
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i-~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~--p-   77 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGV-EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKD--P-   77 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS--G-
T ss_pred             EEEEECCcHHHHHHHHHHhcCCC-EEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCC--h-
Confidence            68899999999999998888888 67776543322  2222222    20 0                 0111111  0 


Q ss_pred             hHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCC
Q 043260          255 SISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAAN  303 (332)
Q Consensus       255 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~  303 (332)
                         +.+..  ...|+|+|+||+|.-...+.+...+..+ ..-|++..+.
T Consensus        78 ---~~i~W--~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~  120 (168)
T d2g82a1          78 ---KEIPW--AEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVIITAPA  120 (168)
T ss_dssp             ---GGCCT--GGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred             ---HHCcc--cccCCceeEeccccccchHHhhhhhccc-cceeeecccc
Confidence               11111  1237999999999755556777777766 6666666655

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=80.66  E-value=2.1  Score=34.44  Aligned_cols=106  Identities=14%  Similarity=0.152  Sum_probs=63.6

Q ss_pred             HHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcCC-----c---c-----hHHHHHHcCCCeeeCCCCC
Q 043260          185 FGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKN-----P---C-----RKDKGEAFGMTDFINPDDE  251 (332)
Q Consensus       185 ~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~-----~---~-----~~~~~~~lga~~v~~~~~~  251 (332)
                      +.++.....--...++++.|+|..|...+++....+.++++.+|+.     .   .     +.++.+......       
T Consensus        14 l~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~-------   86 (222)
T d1vl6a1          14 LNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPER-------   86 (222)
T ss_dssp             HHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTC-------
T ss_pred             HHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchh-------
Confidence            3344333334466789999999999999999999999999999975     1   1     122222211111       


Q ss_pred             CCchHHHHHHHhcCCCCccEEEEcCCChHHHHHHHHHhccCCcEEEEEcCCCC
Q 043260          252 PNKSISELVKEMTHGTGVDYGFECTGVASLISEALEATKLGKGKVMAIGAANE  304 (332)
Q Consensus       252 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~G~~~~  304 (332)
                      ...++.+.+      .+.++++-.....-...+.+..+.++ =.+.-++++..
T Consensus        87 ~~~~l~~~l------~g~~~~~g~~~~~~~~~e~m~~~~~r-PIIFpLSNPt~  132 (222)
T d1vl6a1          87 LSGDLETAL------EGADFFIGVSRGNILKPEWIKKMSRK-PVIFALANPVP  132 (222)
T ss_dssp             CCSCHHHHH------TTCSEEEECSCSSCSCHHHHTTSCSS-CEEEECCSSSC
T ss_pred             hhcchHhhc------cCcceeccccccccccHHHHhhcCCC-CEEEecCCCcc
Confidence            113333333      25788777665532234566666666 66666777653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=80.59  E-value=3  Score=30.89  Aligned_cols=33  Identities=21%  Similarity=0.350  Sum_probs=26.9

Q ss_pred             CEEEEECC-ChHHHHHHHHHHHcCC-CeEEEEcCC
Q 043260          198 SSVAVFGL-GAVGLGVMDRARIQGA-AKIIGIDKN  230 (332)
Q Consensus       198 ~~vlV~G~-g~vG~~~~~la~~~G~-~~Vi~~~~~  230 (332)
                      .+|.|+|+ |.+|..++..+...+. .+++.+|..
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            36899995 9999999888888874 578888864

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.33  E-value=0.89  Score=38.56  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=28.7

Q ss_pred             CEE-EEECC-ChHHHHHHHHHHHcCCCeEEEEcCCc
Q 043260          198 SSV-AVFGL-GAVGLGVMDRARIQGAAKIIGIDKNP  231 (332)
Q Consensus       198 ~~v-lV~G~-g~vG~~~~~la~~~G~~~Vi~~~~~~  231 (332)
                      ++| ||+|+ |-+|..++..+...|. +|+++++..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            357 99998 9999999999988999 999998854

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=80.31  E-value=3.9  Score=35.56  Aligned_cols=56  Identities=25%  Similarity=0.274  Sum_probs=40.1

Q ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcC--CcchHHHHHHcCCCeeeCC
Q 043260          193 KVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK--NPCRKDKGEAFGMTDFINP  248 (332)
Q Consensus       193 ~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~--~~~~~~~~~~lga~~v~~~  248 (332)
                      +++++++|+-..+|..|++++..++.+|.+-++++..  +++|++.++.+|++-+...
T Consensus       140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~  197 (382)
T d1wkva1         140 RVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDP  197 (382)
T ss_dssp             TSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEET
T ss_pred             ccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeecC
Confidence            4677776544466999999999999999833333332  4467778899999866543

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=80.30  E-value=4.1  Score=34.32  Aligned_cols=112  Identities=15%  Similarity=0.109  Sum_probs=64.0

Q ss_pred             hHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHcCCCeEEEEcC--CcchHHHHHHcCCCeeeCCCCCCCchHH----
Q 043260          184 GFGAAWKEFKVEKGSSVAVFGLGAVGLGVMDRARIQGAAKIIGIDK--NPCRKDKGEAFGMTDFINPDDEPNKSIS----  257 (332)
Q Consensus       184 a~~al~~~~~~~~g~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~--~~~~~~~~~~lga~~v~~~~~~~~~~~~----  257 (332)
                      |++.+.....-.+..+|+...+|..|.+++..++..|..-++++..  +..|.+.++.+|++-+....+  .....    
T Consensus        62 a~~~i~~~~~~~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~~~  139 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGAN--FDEAKAKAI  139 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCSS--HHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEEcCcc--cccchhhhh
Confidence            3333433333344555666666888999999999999844444332  335677888899875533222  01111    


Q ss_pred             ---------------------------HHHHHhcCCCCccEEEEcCCChHHHH---HHHHHhccCCcEEEEEc
Q 043260          258 ---------------------------ELVKEMTHGTGVDYGFECTGVASLIS---EALEATKLGKGKVMAIG  300 (332)
Q Consensus       258 ---------------------------~~~~~~~~~~g~d~vid~~g~~~~~~---~~~~~l~~~~G~~v~~G  300 (332)
                                                 ..+.+..  ..+|.||-++|+..++.   ..++.+.+. .+++.+-
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~--~~~D~vv~~~G~GG~~aG~~~~~~~~~~~-~~ii~ve  209 (331)
T d1tdja1         140 ELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQD--AHLDRVFVPVGGGGLAAGVAVLIKQLMPQ-IKVIAVE  209 (331)
T ss_dssp             HHHHHHCCEECCSSCCHHHHHHHHHHHHHHHHHC--TTCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred             hhhhcCCCccccccCChHHhhhhhhHHHHHHHhc--CCCCEEEEeCChhHHHHHHHHHHHHhCCC-cEEEEec
Confidence                                       1111111  24899999998865554   444445555 6776664

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.21  E-value=0.89  Score=37.17  Aligned_cols=30  Identities=30%  Similarity=0.447  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHHHHcCCCeEEEEcCC
Q 043260          200 VAVFGLGAVGLGVMDRARIQGAAKIIGIDKN  230 (332)
Q Consensus       200 vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~  230 (332)
                      ++|+|+|+.|+.++..+..+|. +|.+++..
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~-~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNA-KVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            6889999999999999999999 89999864

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=80.14  E-value=7  Score=31.07  Aligned_cols=93  Identities=15%  Similarity=0.124  Sum_probs=61.2

Q ss_pred             CCC-CEEEEECCChHHHHHHHHHHHcC------CCeEE-EEcCCcchHHHHHHcCCCeeeCCCCCCCchHHHHHHHhcCC
Q 043260          195 EKG-SSVAVFGLGAVGLGVMDRARIQG------AAKII-GIDKNPCRKDKGEAFGMTDFINPDDEPNKSISELVKEMTHG  266 (332)
Q Consensus       195 ~~g-~~vlV~G~g~vG~~~~~la~~~G------~~~Vi-~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~~~~~~~~  266 (332)
                      -+| ++|.|+|-|.-|++.++=++-.|      . +|+ .........+.+++-|.... +...   .+..++++     
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv-~V~VGLr~gs~S~~kA~~dGf~v~-~~~v---~~v~EAv~-----  110 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDV-VVKIGLRKGSNSFAEARAAGFSEE-NGTL---GDMWETIS-----  110 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCC-EEEEEECTTCSCHHHHHHTTCCGG-GTCE---EEHHHHHH-----
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCc-eEEEEeCCCChhHHHHHHcCCccC-CCcc---cCHHHHHh-----
Confidence            355 78999999999999999999854      5 444 44444466788888887421 1111   33444442     


Q ss_pred             CCccEEEEcCCCh---HHHHHHHHHhccCCcEEEEE
Q 043260          267 TGVDYGFECTGVA---SLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       267 ~g~d~vid~~g~~---~~~~~~~~~l~~~~G~~v~~  299 (332)
                       .+|+|+-.+.+.   +.+++....|+++ .++.+.
T Consensus       111 -~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G-~~L~Fa  144 (226)
T d1qmga2         111 -GSDLVLLLISDSAQADNYEKVFSHMKPN-SILGLS  144 (226)
T ss_dssp             -TCSEEEECSCHHHHHHHHHHHHHHSCTT-CEEEES
T ss_pred             -hCCEEEEecchHHHHHHHHHHHHhcCCC-ceeeec
Confidence             479999999874   2345555678886 665553

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=80.02  E-value=9.1  Score=29.82  Aligned_cols=93  Identities=14%  Similarity=0.118  Sum_probs=63.6

Q ss_pred             CEEEEECCChHHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HHcCCC--eeeCCCCCCCchHHHHHHHhcCCCCccE
Q 043260          198 SSVAVFGLGAVGLGVMDRARIQGAAKIIGIDKNPCRKDKG----EAFGMT--DFINPDDEPNKSISELVKEMTHGTGVDY  271 (332)
Q Consensus       198 ~~vlV~G~g~vG~~~~~la~~~G~~~Vi~~~~~~~~~~~~----~~lga~--~v~~~~~~~~~~~~~~~~~~~~~~g~d~  271 (332)
                      ..||=+|+|. |..++.+|+...-..+++++.+......+    ++.+..  .++..+.   ..+    .+......+|.
T Consensus        33 plvLdIGcG~-G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da---~~l----~~~~~~~~~~~  104 (204)
T d1yzha1          33 PIHVEVGSGK-GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG---SDL----TDYFEDGEIDR  104 (204)
T ss_dssp             CEEEEESCTT-SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS---SCG----GGTSCTTCCSE
T ss_pred             CeEEEEeccC-CHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCH---HHH----hhhccCCceeh
Confidence            4566679987 88999999988545999999998766543    455654  3333322   222    23333446888


Q ss_pred             EEEcCCC--------------hHHHHHHHHHhccCCcEEEEE
Q 043260          272 GFECTGV--------------ASLISEALEATKLGKGKVMAI  299 (332)
Q Consensus       272 vid~~g~--------------~~~~~~~~~~l~~~~G~~v~~  299 (332)
                      |+-....              +..++.+.+.|+++ |.+.+.
T Consensus       105 i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lkpg-G~l~i~  145 (204)
T d1yzha1         105 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN-GEIHFK  145 (204)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT-CEEEEE
T ss_pred             hcccccccccchhhhhhhhhHHHHHHHHHHhCCCC-cEEEEE
Confidence            8776654              35688999999998 998764