Citrus Sinensis ID: 043289

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-----

MGGATGSRRKTSNNRNKSKQRRKPDPSSSSGRRLRNSLFVEGGLLSDWQQQQPQQLNSCSKARKSNLNSNSGNLNPSKVLASKSGSKKSNGNAFGYQYPSVDLKELCFGGNDGDINLDESQPINLLGSKDSRIVAYVDQTPDLKPQNLIYSCDYDSSFVLGDSSHRGLGFCDDSEATPSGIDSSSKHREQQDASDSDSLSFKEEVDTDGNNNQEEVAEELPDETLSKKKNSGFLSIGGMKLYTQDLSDEGSDDQSASESLHDETSESYSEGDGSEDLSDSDSVIDEEVAEDYVEGIGGSDNVLDAKWLVEQDFDGSDDDSSSSSGFDGTVEKLSGIAIQEASREYGMKKPLPLSRKKYSTGDSCSFALDDLMFVKDPRVFSAKKKHVAQLPQSWPREAQKSKKSRNLPGAKKKHRKEMIAVKRRERMLRRGVDLEDINSTLEQIVLEEVDMFSFQPMHHRDCSQVRRLAAIYRLRSDSQGSGKKRFVTVTRTQHTCMPSSADRLRLEKLIGAGNEDIDFAITEGPYTKSANADRKSSKSSKSVTVHGNSGKASKKKGSGKKVAYANQPMSFVSSGILQSDSVEIRTVDAVDINETCESKGTVSSTQIGAFEVHTKGFGSKMMAKMGYVEGGGLGKDGQGMSKPIEAIQRPKKLGLGVEFSNTDDDSARKESRSNSARKESRSNSAKKGAQNIGAF

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccEEEccccccEEEEEEccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHHHHcccHHHHccccccccEEEcccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHcHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHcHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccccccccccEEEEccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccEEEccccccccccccccccHHHHHHHccHHHHHHHHHHHHcccccccccc

cccccccEEcccccccccccccccccccccccEEHcEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHcEEEEccccccccccccccEEEEcccccEEEEEEccccccccccEEEEEEccccEEEccccccccccccHHccccccccccccHccccccccccccccHHHcccccccccHHcccccccccccccccccEEEEccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHcHHHHEccccccccccccccccccHHHHHccHHHHHHHHHHHcccccccHHHccccccccccccHHHEEEEccHHHHHHHcccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHccccccccccEEEEEEEEccccccccccccHHHHHHHccccccccEEEccccHccccccccccccccHHHHccccccHcccccccccccccccccccEcccccccccccccHccccccccccccccccccccccccHHHcccHHHHHHHHHccccccccccccccccEEEEEEEEccccccEcEEcccccccHHHHHccccHHHHHcccccccccccccccc

mggatgsrrktsnnrnkskqrrkpdpssssgrrlrnSLFVeggllsdwqqqqpqqlnsCSKArksnlnsnsgnlnpskvlasksgskksngnafgyqypsvdlkelcfggndgdinldesqpinllgskdsrivayvdqtpdlkpqnliyscdydssfvlgdsshrglgfcddseatpsgidssskhreqqdasdsdslsfkeevdtdgnnnqeevaeelpdetlskkknsgflsiggmklytqdlsdegsddqsaseslhdetsesysegdgsedlsdsdsvidEEVAEDYvegiggsdnvlDAKWLveqdfdgsdddsssssgfdgtveKLSGIAIQEASReygmkkplplsrkkystgdscsfalddlmfvkdprvfsakkkhvaqlpqswpreaqkskksrnlpgakkkHRKEMIAVKRRERMLRRGVDLEDINSTLEQIVLEEvdmfsfqpmhhrdcSQVRRLAAIYRLrsdsqgsgkkRFVTVTrtqhtcmpssaDRLRLEKLIgagnedidfaitegpytksanadrksskssksvtvhgnsgkaskkkgsgkkvayanqpmsfvssgilqsdsveirtvdavdinetceskgtvsstqigafevhtkgfgskmMAKMgyveggglgkdgqgmskpieaiqrpkklglgvefsntdddsarkesrsnsarkesrsnsakkgaqnigaf

mggatgsrrktsnnrnkskqrrkpdpssssgrrlrNSLFVEGGLLSDWQQQQPQQLNSCSKARKsnlnsnsgnlnpskvlasksgskksngNAFGYQYPSVDLKELCFGGNDGDINLDESQPINLLGSKDSRIVAYVDQTPDLKPQNLIYSCDYDSSFVLGDSSHRGLGFCDDSEATPSGidssskhreqqdasdsdslsfkeevdtdgnnnqeevaeelpdetlskkknsgflsiGGMKLYTQDLSDEGSDDQSASESLHDetsesysegdgsedlsdsDSVIDEEVAEDYVEGIGGSDNVLDAKWLVEQDFDGSDDDSSSSSGFDGTVEKLSGIAIQEasreygmkkplplsrkkysTGDSCSFALDDLMFVKDPRVFSAKKkhvaqlpqswpreaqkskksrnlpgakkkhrkemiavkrrermlrrgvdledinsTLEQIVLEEVDMFSFQPMHHRDCSQVRRLAAIYrlrsdsqgsgkkrfvtvtrtqhtcmpssadRLRLEKLIGAGnedidfaitegpytksanadrksskssksvtvhgnsgkaskkkgsgkKVAYANQPMSFvssgilqsdsvEIRTVDAVDINETceskgtvsstqigaFEVHTKGFGSKMMAKMGYVEGGGLGKDGQGMSKPIEAiqrpkklglgvefsntdddsarkesrsnsarkesrsnsakkgaqnigaf

MGGATGSRRKTSNNRNKSKQRRKPDPssssgrrlrnslFVEGGLLSDWqqqqpqqLNSCSKARKsnlnsnsgnlnpsKVLAsksgskksngnAFGYQYPSVDLKELCFGGNDGDINLDESQPINLLGSKDSRIVAYVDQTPDLKPQNLIYSCDYDSSFVLGDSSHRGLGFCDDSEATPSGIDSSSKHREQQDASDSDSLSFKEEVDTDGNNNQEEVAEELPDETLSKKKNSGFLSIGGMKLYTQDLSDEGSDDQSASESLHdetsesysegdgsedlsdsdsVIDEEVAEDYVEGIGGSDNVLDAKWLVEQdfdgsdddsssssgfdgTVEKLSGIAIQEASREYGMKKPLPLSRKKYSTGDSCSFALDDLMFVKDPRVFSAKKKHVAQLPQSWPREAQKSKKSRNLPGAKKKHRKEMIAVKRRERMLRRGVDLEDINSTLEQIVLEEVDMFSFQPMHHRDCSQVRRLAAIYRLRSDSQGSGKKRFVTVTRTQHTCMPSSADRLRLEKLIGAGNEDIDFAITEGPYTKSANADRksskssksVTVHGNsgkaskkkgsgkkVAYANQPMSFVSSGILQSDSVEIRTVDAVDINETCESKGTVSSTQIGAFEVHTKGFGSKMMAKMGYVEGGGLGKDGQGMSKPIEAIQRPKKLGLGVEFSNTDDDSARKESRSNSARKESRSNSAKKGAQNIGAF

********************************************************************************************AFGYQYPSVDLKELCFGGNDGDINLDESQPINLLGSKDSRIVAYVDQTPDLKPQNLIYSCDYDSSFVLGDSSHRGLGFC**********************************************************************************************************************EDYVEGIGGSDNVLDAKWLVE****************************************************SCSFALDDLMFVKDPRVF************************************************RRGVDLEDINSTLEQIVLEEVDMFSFQPMHHRDCSQVRRLAAIYRLR**********FVTVTRTQHTC******RLRLEKLIGAGNEDIDFAIT****************************************************GILQSDSVEIRTVDAVDINETCESKGTVSSTQIGAFEVHTKGFGSKMMAKMGYV*******************************************************************

**************************************FVEGGLLSD**********************************************FGYQYPSVD****************ESQPINLLGSKDSRIVAYVDQTPDLKPQNLIYSCDYDSSFVLGDSSHRGLGFCD****************************************************************GGMKLY*****************************************IDEEVAEDYVEGIGGSDNVLDA*W***********************E*************************************DDLM****************************************************************INSTLEQIVLEEVDM**************RRLA***********************************************************************************************************************************************HTKGFGSKMMAKMGYVEGGGLGKDGQGMSKPIEAIQRP*********************************************

********************************RLRNSLFVEGGLLSDW*****************NLNSNSGNLNPSKVLASKSGSKKSNGNAFGYQYPSVDLKELCFGGNDGDINLDESQPINLLGSKDSRIVAYVDQTPDLKPQNLIYSCDYDSSFVLGDSSHRGLGFCDDSE************************************************TLSKKKNSGFLSIGGMKLYTQD***********************************DSVIDEEVAEDYVEGIGGSDNVLDAKWLVEQD**************DGTVEKLSGIAIQEASREYGMKKPLPLSRKKYSTGDSCSFALDDLMFVKDPRVFS***********************************EMIAVKRRERMLRRGVDLEDINSTLEQIVLEEVDMFSFQPMHHRDCSQVRRLAAIYRLRSDSQGSGKKRFVTVTRTQHTCMPSSADRLRLEKLIGAGNEDIDFAITEGPYT***********************************AYANQPMSFVSSGILQSDSVEIRTVDAVDINETCESKGTVSSTQIGAFEVHTKGFGSKMMAKMGYVEGGGLGKDGQGMSKPIEAIQRPKKLGLGVEFS***********************************

*******************************RRLRNSLFVEGGLLSDW***************************************KSNGNAFGYQYPSVDLKELCFGGNDGDINLDESQPINLLGSKDSRIVAYVDQTPDLKPQNLIYSCDYDSSFVLGDS******FCDD*******************************************************KNSGFLSIGGMKLYTQDL************************************VIDEEVAEDYVEGIGGSDNVLDAKWLVEQD***********SGFDGTVEKLSGIAIQEASREYG*K************GDSCSFALDDLMFVKDPRVFSAK**********************NLPGAKKKHRKEMIAVKRRERMLRRGVDLEDINSTLEQIVLEEVDMFSFQPMHHRDCSQVRRLAAIYRLRSDSQGSGKKRFVTVTRTQHTCMPSSADRLRLEKLIGAGNEDIDFAITEGPYTK******************************************************************************IGAFEVHTKGFGSKMMAKMGYVEGGGLGKDGQGMSKPIEAIQRPKKLGLGVEFSN**********************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		695	2.2.26 [Sep-21-2011]
Q0IIX9		825	Tuftelin-interacting prot	yes	no	0.207	0.174	0.289	4e-10
A7SBN6		508	Zinc finger CCCH-type wit	N/A	no	0.076	0.104	0.547	1e-09
Q66J74		824	Tuftelin-interacting prot	N/A	no	0.207	0.174	0.283	2e-09
A1XD97		837	Tuftelin-interacting prot	yes	no	0.2	0.166	0.278	3e-09
Q9ERA6		838	Tuftelin-interacting prot	yes	no	0.084	0.070	0.542	3e-09
Q5U2Y6		837	Tuftelin-interacting prot	yes	no	0.082	0.068	0.543	4e-09
A4UMC6		834	Tuftelin-interacting prot	no	no	0.082	0.068	0.543	4e-09
Q29RR5		837	Tuftelin-interacting prot	yes	no	0.2	0.166	0.278	4e-09
Q06AK6		836	Tuftelin-interacting prot	yes	no	0.2	0.166	0.278	5e-09
A1XD93		837	Tuftelin-interacting prot	yes	no	0.2	0.166	0.278	5e-09

>sp\|Q0IIX9\|TFP11_XENTR Tuftelin-interacting protein 11 OS=Xenopus tropicalis GN=tfip11 PE=2 SV=2	Back alignment and function desciption

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 29/173 (16%)

Query: 513 GNEDIDFAITEGPYTKSANADRKSSKSSKSVTVHGNSGKA----SKKKGSGKKVAYANQP 568
           G E  +F IT+       N +R+    +K    +G   +      +    GK+    + P
Sbjct: 15  GVEMENFEITDWDLQNEFNPNRRKHFQTKEEATYGMWAERDSDDERPSFGGKRSRDYSAP 74

Query: 569 MSFVSSGILQSDSVE-------------------------IRTVDAVDINETCESKGTVS 603
           ++F+S+GI +  + E                         +RT      ++   + G  S
Sbjct: 75  VNFISAGIRKPAAEEKSDSDSDSETQARRETFPKDFEAKKLRTGGNFKPSQRTFAGGIKS 134

Query: 604 STQIGAFEVHTKGFGSKMMAKMGYVEGGGLGKDGQGMSKPIEAIQRPKKLGLG 656
           +T  G++E HTKG G K++ KMGYV+G GLGK+ QG+  PIEA QR  K  +G
Sbjct: 135 NTDFGSWERHTKGIGQKLLQKMGYVQGRGLGKNAQGIIAPIEAKQRKGKGAVG 187

May be involved in pre-mRNA splicing.
Xenopus tropicalis (taxid: 8364)

>sp\|A7SBN6\|ZGPAT_NEMVE Zinc finger CCCH-type with G patch domain-containing protein OS=Nematostella vectensis GN=v1g244155 PE=3 SV=1	Back alignment and function description

>sp\|Q66J74\|TFP11_XENLA Tuftelin-interacting protein 11 OS=Xenopus laevis GN=tfip11 PE=2 SV=1	Back alignment and function description

>sp\|A1XD97\|TFP11_CANFA Tuftelin-interacting protein 11 OS=Canis familiaris GN=TFIP11 PE=2 SV=1	Back alignment and function description

>sp\|Q9ERA6\|TFP11_MOUSE Tuftelin-interacting protein 11 OS=Mus musculus GN=Tfip11 PE=1 SV=1	Back alignment and function description

>sp\|Q5U2Y6\|TFP11_RAT Tuftelin-interacting protein 11 OS=Rattus norvegicus GN=Tfip11 PE=2 SV=1	Back alignment and function description

>sp\|A4UMC6\|TFP11_MONDO Tuftelin-interacting protein 11 OS=Monodelphis domestica GN=TFIP11 PE=2 SV=1	Back alignment and function description

>sp\|Q29RR5\|TFP11_BOVIN Tuftelin-interacting protein 11 OS=Bos taurus GN=TFIP11 PE=2 SV=2	Back alignment and function description

>sp\|Q06AK6\|TFP11_PIG Tuftelin-interacting protein 11 OS=Sus scrofa GN=TFIP11 PE=2 SV=1	Back alignment and function description

>sp\|A1XD93\|TFP11_PANTR Tuftelin-interacting protein 11 OS=Pan troglodytes GN=TFIP11 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		695
255565101		775	zinc finger protein, putative [Ricinus c	0.916	0.821	0.563	1e-180
224144032		737	predicted protein [Populus trichocarpa]	0.906	0.854	0.554	1e-179
356548467		762	PREDICTED: uncharacterized protein LOC10	0.975	0.889	0.512	1e-170
356562894		767	PREDICTED: uncharacterized protein LOC10	0.965	0.874	0.508	1e-163
296084580		636	unnamed protein product [Vitis vinifera]	0.892	0.974	0.535	1e-159
359484702		677	PREDICTED: uncharacterized protein LOC10	0.893	0.917	0.505	1e-155
449457935		793	PREDICTED: uncharacterized protein LOC10	0.965	0.846	0.477	1e-149
449505384		802	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.964	0.835	0.473	1e-147
357478467		809	Zinc finger CCCH-type with G patch domai	0.942	0.809	0.483	1e-147
297833752		777	hypothetical protein ARALYDRAFT_478310 [	0.917	0.821	0.503	1e-139

>gi\|255565101\|ref\|XP_002523543.1\| zinc finger protein, putative [Ricinus communis] gi\|223537250\|gb\|EEF38882.1\| zinc finger protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 391/694 (56%), Positives = 490/694 (70%), Gaps = 57/694 (8%)

Query: 11  TSNNRNKSKQRRKPDPSSSSGRRLRNSLFVEGGLLSDWQQQQPQQLNSCSKARKSNLNSN 70
           +SN +  +K RR+     S+G  +R+SLFVEGG+LSDW       L+S   A     NSN
Sbjct: 27  SSNTKKNNKSRRR-----SNG--IRDSLFVEGGVLSDWN------LSSSCPASFQGRNSN 73

Query: 71  SG---NLNPSKVLASKSGSKKSNGNAFGYQYPSVDLK-----ELCFGGNDGDINLDESQP 122
           +            +SKSG +KSNGNAFGY YP+V+++     EL   GN  D +LD SQP
Sbjct: 74  ANFKSASKSKAASSSKSGPRKSNGNAFGYSYPTVEIQDGLHNELSVKGNGRDYDLDVSQP 133

Query: 123 INLLGSKDSRIVAYVDQTPDLKPQNLIYSCDYDSSFVLGDSSHRGLGFCDDSEATPSGID 182
           I L+ SK+++IVAY+D T  LKP N+  + DYDSSFVL  S HRGLGF D+SE  P  I 
Sbjct: 134 IVLVDSKETQIVAYLDNTTPLKPNNVDCTYDYDSSFVLDGSVHRGLGFHDESETNPDAIG 193

Query: 183 SSSKHREQQDASDS--DSLSFKEEVDTDGNNNQ--EEVAEELPDETLSKKKNSGFLSIGG 238
           SSSK  E++   ++  DS   ++E+D D  + +  EE+AEE+  + LS +KNSGFLSIG 
Sbjct: 194 SSSKQTEEEGKGETCFDSSHSEKEMDADDTDCEVGEEMAEEVQTKALSPRKNSGFLSIGS 253

Query: 239 MKLYTQDLSDEGSDDQSASESLHDETSES----YSEGDGSEDLSDSDSVIDEEVAEDYVE 294
           +KL+TQD+SD  S+++S  + + + +        SE D S+++SDSD  IDEEVAEDY+E
Sbjct: 254 VKLFTQDISDGESEEESEDDEVSESSESGETDELSESDMSDNISDSDLEIDEEVAEDYLE 313

Query: 295 GIGGSDNVLDAKWLVEQDF------DGSDDDSSSSSGFDGTVEKLSGIAIQEASREYGMK 348
           GIGGSDN+LDAKWLVE         D  +D SSSS  FD T+EKL GI +Q+ASREYGMK
Sbjct: 314 GIGGSDNILDAKWLVENHLGECHLVDSDEDSSSSSDCFDETLEKLGGIELQDASREYGMK 373

Query: 349 KPLPLSRKKYSTG--DSCSFALDDLMFVKDPRVFSAKKKHVAQLPQSWPREAQKSKKSRN 406
           K    SRKKY+ G  D+    LDDL+ VKDPR  SAKKK+ A+LPQSWP EAQKSKKSR 
Sbjct: 374 KSQ--SRKKYNAGSRDALPSTLDDLILVKDPRTVSAKKKYNARLPQSWPLEAQKSKKSRR 431

Query: 407 LPGAKKKHRKEMIAVKRRERMLRRGVDLEDINSTLEQIVLEEVDMFSFQPMHHRDCSQVR 466
            PG KKKHRKEMIAVKRRERML+RGVDLE IN+ LEQIVL+EV++FSFQPMH RDCSQVR
Sbjct: 432 FPGEKKKHRKEMIAVKRRERMLQRGVDLEKINTKLEQIVLDEVEIFSFQPMHSRDCSQVR 491

Query: 467 RLAAIYRLRSDSQGSGKKRFVTVTRTQHTCMPSSADRLRLEKLIGAGNEDIDFAITEGPY 526
           RLAAIYRL S  QGSGK+RFVTVTRTQHT MPS++D+LRLEKLIGAG ED+DF + EG  
Sbjct: 492 RLAAIYRLSSGCQGSGKRRFVTVTRTQHTSMPSASDKLRLEKLIGAGEEDLDFTVNEGSR 551

Query: 527 TKSANADRKSSKSSK---------------SVTVHGNSGKASKKKGSGKKVAYANQPMSF 571
           TKS++  R   K S+               S     NS  ASK++G G+K  YA+QP+SF
Sbjct: 552 TKSSSIGRYKGKQSRMGGGFNSLETQTRSKSSKKSTNSVSASKRQG-GRKGLYADQPVSF 610

Query: 572 VSSGILQSDSVEIRTVDAVDINETCESKGTVSSTQIGAFEVHTKGFGSKMMAKMGYVEGG 631
           VSSGI+ S++VE+ T+D+ +  ET E+K T S+ ++GAFEVHTKGFGSKMMAKMG+VEGG
Sbjct: 611 VSSGIM-SEAVEMTTMDSKE-TETSENKDTTSTAKVGAFEVHTKGFGSKMMAKMGFVEGG 668

Query: 632 GLGKDGQGMSKPIEAIQRPKKLGLGVEFSNTDDD 665
           GLG+DGQG+++PIEAIQRPK LGLG    +T+ D
Sbjct: 669 GLGRDGQGIAEPIEAIQRPKSLGLGANIPDTNGD 702

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224144032\|ref\|XP_002325162.1\| predicted protein [Populus trichocarpa] gi\|222866596\|gb\|EEF03727.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356548467\|ref\|XP_003542623.1\| PREDICTED: uncharacterized protein LOC100802615 [Glycine max]	Back alignment and taxonomy information

>gi\|356562894\|ref\|XP_003549703.1\| PREDICTED: uncharacterized protein LOC100781443 [Glycine max]	Back alignment and taxonomy information

>gi\|296084580\|emb\|CBI25601.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359484702\|ref\|XP_002265219.2\| PREDICTED: uncharacterized protein LOC100260114 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449457935\|ref\|XP_004146703.1\| PREDICTED: uncharacterized protein LOC101215133 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449505384\|ref\|XP_004162452.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101226078 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357478467\|ref\|XP_003609519.1\| Zinc finger CCCH-type with G patch domain-containing protein [Medicago truncatula] gi\|355510574\|gb\|AES91716.1\| Zinc finger CCCH-type with G patch domain-containing protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297833752\|ref\|XP_002884758.1\| hypothetical protein ARALYDRAFT_478310 [Arabidopsis lyrata subsp. lyrata] gi\|297330598\|gb\|EFH61017.1\| hypothetical protein ARALYDRAFT_478310 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		695
TAIR\|locus:2085059		781	AT3G09850 [Arabidopsis thalian	0.912	0.811	0.459	3.3e-134
UNIPROTKB\|Q5U4Z3		524	zgpat "Zinc finger CCCH-type w	0.133	0.177	0.346	4.4e-08
UNIPROTKB\|Q28H71		514	zgpat "Zinc finger CCCH-type w	0.141	0.190	0.336	1.1e-07
MGI\|MGI:1930075		838	Tfip11 "tuftelin interacting p	0.132	0.109	0.408	2e-07
UNIPROTKB\|C0HAV3		527	zgpat "Zinc finger CCCH-type w	0.130	0.172	0.380	2.1e-07
UNIPROTKB\|A4UMC6		834	TFIP11 "Tuftelin-interacting p	0.099	0.082	0.478	2.5e-07
UNIPROTKB\|I3L834		185	GPATCH2 "Uncharacterized prote	0.064	0.243	0.511	2.9e-07
UNIPROTKB\|Q5ZII9		827	TFIP11 "Tuftelin-interacting p	0.096	0.081	0.492	3e-07
RGD\|1311449		837	Tfip11 "tuftelin interacting p	0.129	0.107	0.406	3.3e-07
UNIPROTKB\|Q9NW75		528	GPATCH2 "G patch domain-contai	0.056	0.073	0.589	3.6e-07

TAIR\|locus:2085059 AT3G09850 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
 Identities = 310/674 (45%), Positives = 396/674 (58%)

Query:    39 FVEGGLLSDWXXXXXXXLNSCSKARKXXXXXXXXXXXXXKVLAXXXXXXXXXXXAFGYQY 98
             FVEGG+LSD+         S   +               K  A            + YQY
Sbjct:    52 FVEGGILSDYRKDPNFSTPSRGGS-SSGKGLRSRSIERVKASASTSGPRKCSGNTYVYQY 110

Query:    99 PSVDLKELCF--GGNDGDINLDESQPINLLGSKDSRIVAYVDQTPDL-KPQNLIYSCDYD 155
             PS+D +E      G + D  ++ES P+ L  S+ ++IVA++DQTP   K   + Y  +Y+
Sbjct:   111 PSIDFEEGLDRRSGVESD-QMNES-PLVLGKSEATQIVAFLDQTPSSSKGIKVSYDYEYE 168

Query:   156 SSFVLGDSSHRGLGFCDDSEATPSGIDSSSKHREQQDASDSDSLSFKEEVDTDGNNNQEE 215
              S+VLGD SH+GLGFCDDS+ATPSG  S  K    Q  S S      + VD  G N+ E 
Sbjct:   169 PSYVLGDDSHKGLGFCDDSDATPSGSLSIPKALGDQGGSFSHEEE-GDAVDESGGNDDEL 227

Query:   216 VAEELPDETLS-KKKNSGFLSIGGMKLYTQDLSDEGSD----------DQSASESLHXXX 264
                 +PD   + K++NSGF+SIGGMKLYT+D+S E SD          D+S  E      
Sbjct:   228 ----MPDVVKTPKRRNSGFISIGGMKLYTEDVSGEESDGEEEMNDDDDDESGDEG--SSG 281

Query:   265 XXXXXXXXXXXXXXXXXXVIDEEVAEDYVEGIGGSDNVLDAKWLVEQXXXXXXXXXXXXX 324
                                ID++VA+DY+EGIGGS+ +LDA WL EQ             
Sbjct:   282 SSELSESDSSEDMFGSYSEIDDDVAKDYLEGIGGSEIMLDAHWLAEQSLDKLDLSSDDSS 341

Query:   325 XXXXT---VEKLSGIAIQEASREYGMKKPLPLSRKKYST-GDSCS-FALDDLMFVKDPRV 379
                 +     KL+GI +Q+AS EYG KK    +R  YS  G S +  A+DDLMFVKDPR 
Sbjct:   342 SSDSSDRKTRKLTGIRLQKASMEYGKKKT---TRSGYSGHGKSTNPLAMDDLMFVKDPRS 398

Query:   380 FSAKK---KHVAQLPQSWPREAQKSKKSRNLPGAKKKHRKEMIAVKRRERMLRRGVDLED 436
              S KK   K VA+ PQSWP  A KSK SR+ PG  KKHRKE IA+KRRERML+RGVDL D
Sbjct:   399 LSGKKNKKKEVAKFPQSWPSRAPKSKNSRSFPGENKKHRKEYIALKRRERMLQRGVDLAD 458

Query:   437 INSTLEQIVLEEVDMFSFQPMHHRDCSQVRRLAAIYRLRSDSQGSGKKRFVTVTRTQHTC 496
             INS LE  VLE VDM  FQ MH+RDCSQVRRLA +YRL S   GSGKK FVTVTRT  TC
Sbjct:   459 INSQLENFVLENVDMHCFQRMHNRDCSQVRRLADVYRLSSSCNGSGKKSFVTVTRTYQTC 518

Query:   497 MPSSADRLRLEKLIGAGNEDIDFAITEGPYTKSANADRXXXXXXXXVTVHGNXXXXXXXX 556
             MPS++D+LR+EKLIGAG+ED DFA++ G   KS + DR                      
Sbjct:   519 MPSASDKLRIEKLIGAGDEDCDFAVSGGVKGKSGSLDRKKAKDSAKK--RPTREERERNK 576

Query:   557 XXXXXVAYANQPMSFVSSGILQSDSVEIRT-VDAVDINETCESK-GTVSSTQIGAFEVHT 614
                   +YA+QP+SFVSSGI+ S+    +T V+ V   E  E+  GT +   IGAFEVHT
Sbjct:   577 SNGKKSSYADQPVSFVSSGIIDSEIAVAKTSVEKV-AKEVAETTPGTSNGADIGAFEVHT 635

Query:   615 KGFGSKMMAKMGYVEGGGLGKDGQGMSKPIEAIQRPKKLGLGVEFSNTDDDSARKESRSN 674
             +GFGSKMMAKMG+++GGGLGKDG+G+++PIEA+QRPK LGLG++FS   +D +   + +N
Sbjct:   636 RGFGSKMMAKMGFIDGGGLGKDGKGIAQPIEAVQRPKSLGLGLDFSIDTEDPSPSSNNNN 695

Query:   675 SARKESRSNSAKKG 688
             +A++   S+S K G
Sbjct:   696 NAKRNRSSSSGKHG 709

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009630 "gravitropism" evidence=RCA

UNIPROTKB\|Q5U4Z3 zgpat "Zinc finger CCCH-type with G patch domain-containing protein" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|Q28H71 zgpat "Zinc finger CCCH-type with G patch domain-containing protein" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

MGI\|MGI:1930075 Tfip11 "tuftelin interacting protein 11" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|C0HAV3 zgpat "Zinc finger CCCH-type with G patch domain-containing protein" [Salmo salar (taxid:8030)]	Back alignment and assigned GO terms

UNIPROTKB\|A4UMC6 TFIP11 "Tuftelin-interacting protein 11" [Monodelphis domestica (taxid:13616)]	Back alignment and assigned GO terms

UNIPROTKB\|I3L834 GPATCH2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZII9 TFIP11 "Tuftelin-interacting protein 11" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1311449 Tfip11 "tuftelin interacting protein 11" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NW75 GPATCH2 "G patch domain-containing protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00181030	hypothetical protein (738 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		695
cd02646		58	cd02646, R3H_G-patch, R3H domain of a group of fun	1e-16
pfam01585		45	pfam01585, G-patch, G-patch domain	3e-14
smart00443		47	smart00443, G_patch, glycine rich nucleic binding	3e-14
pfam12656		79	pfam12656, G-patch_2, DExH-box splicing factor bin	9e-08
cd02325		59	cd02325, R3H, R3H domain	3e-07
smart00393		79	smart00393, R3H, Putative single-stranded nucleic	5e-06
pfam01424		55	pfam01424, R3H, R3H domain	6e-06

>gnl\|CDD\|100075 cd02646, R3H_G-patch, R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain	Back alignment and domain information

 Score = 74.1 bits (183), Expect = 1e-16
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 434 LEDINSTLEQIVLEEVDMFSFQPMHHRDCSQVRRLAAIYRLRSDSQGSGKKRFVTVTR 491
           +EDI   +E  +L+  D  SF PM       + +LA  Y L+S S+G GKKRFVTVT+
Sbjct: 1   IEDIKDEIEAFLLDSRDSLSFPPMDKHGRKTIHKLANCYNLKSKSRGKGKKRFVTVTK 58

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Length = 58

>gnl\|CDD\|144978 pfam01585, G-patch, G-patch domain	Back alignment and domain information

>gnl\|CDD\|197727 smart00443, G_patch, glycine rich nucleic binding domain	Back alignment and domain information

>gnl\|CDD\|221692 pfam12656, G-patch_2, DExH-box splicing factor binding site	Back alignment and domain information

>gnl\|CDD\|100064 cd02325, R3H, R3H domain	Back alignment and domain information

>gnl\|CDD\|214647 smart00393, R3H, Putative single-stranded nucleic acids-binding domain	Back alignment and domain information

>gnl\|CDD\|216493 pfam01424, R3H, R3H domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		695
KOG2184		767	consensus Tuftelin-interacting protein TIP39, cont	99.9
cd02646		58	R3H_G-patch R3H domain of a group of fungal and pl	99.69
KOG2184		767	consensus Tuftelin-interacting protein TIP39, cont	99.66
cd02640		60	R3H_NRF R3H domain of the NF-kappaB-repression fac	99.32
PF01585		45	G-patch: G-patch domain; InterPro: IPR000467 The D	99.32
cd06007		59	R3H_DEXH_helicase R3H domain of a group of protein	99.3
cd02641		60	R3H_Smubp-2_like R3H domain of Smubp-2_like protei	99.26
PF01424		63	R3H: R3H domain; InterPro: IPR001374 The R3H motif	99.21
smart00443		47	G_patch glycine rich nucleic binding domain. A pre	99.13
cd02325		59	R3H R3H domain. The name of the R3H domain comes f	99.05
cd02642		63	R3H_encore_like R3H domain of encore-like and DIP1	99.01
smart00393		79	R3H Putative single-stranded nucleic acids-binding	98.94
KOG2185		486	consensus Predicted RNA-processing protein, contai	98.89
cd06006		59	R3H_unknown_2 R3H domain of a group of fungal prot	98.88
PF12457		109	TIP_N: Tuftelin interacting protein N terminal ; I	98.86
KOG2809		326	consensus Telomerase elongation inhibitor/RNA matu	98.83
cd02643		74	R3H_NF-X1 R3H domain of the X1 box binding protein	98.55
PF12656		77	G-patch_2: DExH-box splicing factor binding site	98.48
KOG0965		988	consensus Predicted RNA-binding protein, contains	98.3
cd02644		67	R3H_jag R3H domain found in proteins homologous to	98.29
cd02636		61	R3H_sperm-antigen R3H domain of a group of metazoa	98.26
cd02639		60	R3H_RRM R3H domain of mainly fungal proteins which	98.15
KOG3673		845	consensus FtsJ-like RNA methyltransferase [RNA pro	97.9
cd02645		60	R3H_AAA R3H domain of a group of proteins with unk	97.78
KOG1996		378	consensus mRNA splicing factor [RNA processing and	97.76
KOG2384		223	consensus Major histocompatibility complex protein	97.69
KOG0154		573	consensus RNA-binding protein RBM5 and related pro	97.19
cd02638		62	R3H_unknown_1 R3H domain of a group of eukaryotic	97.15
KOG4315		455	consensus G-patch nucleic acid binding protein [Ge	96.94
KOG1994		268	consensus Predicted RNA binding protein, contains	96.57
KOG4368		757	consensus Predicted RNA binding protein, contains	95.72
KOG2138		883	consensus Predicted RNA binding protein, contains	94.8
COG1847		208	Jag Predicted RNA-binding protein [General functio	93.85
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	93.44
KOG1952		950	consensus Transcription factor NF-X1, contains NFX	91.31
KOG1994		268	consensus Predicted RNA binding protein, contains	85.0

>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification]	Back alignment and domain information

Probab=99.90  E-value=6.6e-26  Score=255.84  Aligned_cols=598  Identities=18%  Similarity=0.067  Sum_probs=415.4

Q ss_pred             cccceEEeccccccCCcCCccccccccccccCCCCCCCCCCCCCcccccccCCCCCCCcccccccCCccchhhc--cCCC
Q 043289           34 LRNSLFVEGGLLSDWQQQQPQQLNSCSKARKSNLNSNSGNLNPSKVLASKSGSKKSNGNAFGYQYPSVDLKELC--FGGN  111 (695)
Q Consensus        34 ~~~~~fv~gg~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~k~~~~~~~~~y~~~~~~~~~--~~~~  111 (695)
                      +++..||+||++.|...+  +..+|.+.|-.++..+++-+.-++.++.|.+||+++.|+++.|.    ......  +|..
T Consensus        48 ~~pvnFvs~gidk~~~~~--d~~~p~~~~~~~~d~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~----~~e~~t~gig~K  121 (767)
T KOG2184|consen   48 TKPVNFVSGGIDKDSRAN--DEGLPQAGGDKPGDALSSRSKERGNAKRSQSGPRKGSGSTNVFG----DFEKGTKGIGAK  121 (767)
T ss_pred             CCCceeeccccccccccc--cccCCcccCCcccccccccccccccccccccCCCCCccchhhhh----hhhhcccchhHH
Confidence            899999999999999888  78888889999999999988889999999999999999999998    443333  2210


Q ss_pred             CCCCCCCCCCceeeccCcccceeeecccCC-CCCCCccccccccCCcccccCCCcccccccCCCCCCCCCCCCccccccc
Q 043289          112 DGDINLDESQPINLLGSKDSRIVAYVDQTP-DLKPQNLIYSCDYDSSFVLGDSSHRGLGFCDDSEATPSGIDSSSKHREQ  190 (695)
Q Consensus       112 ~~d~~~~~~~p~~~~~s~~~q~~~~~d~~~-~~~~~~~~~~y~y~~~~~~g~~~~~glgf~~~~~~~~~~~~~~~~~~~~  190 (695)
                      --+ .|. =-|-+.+...+++||+.|++++ +.+..-.-|.|.|.++      +|-+|++|+++|+|++...+..+..+.
T Consensus       122 ll~-kMG-YkpG~GLGkn~qGIv~Pieaq~Rp~rgg~Gay~~e~~~s------s~~~~~~~~~~e~~~~~s~se~~~~~~  193 (767)
T KOG2184|consen  122 LLE-KMG-YKPGKGLGKNAQGIVAPIEAQLRPGRGGLGAYGFETEAS------SHKDLEKVDSSEDTVSVSVSEDKEKHG  193 (767)
T ss_pred             HHH-HcC-CccccccCccccccccHHhcccCccCccccccccccccc------cccchhhhhccccccccccchhhhhcc
Confidence            000 111 2467788899999999999999 4454334888888886      799999999999999998877766555


Q ss_pred             CCCCCCCCCcchhccccCCCCChHHHhhhcCCcccccccCcceeEecceEEEeecCCCCCCccccccccccc---cccc-
Q 043289          191 QDASDSDSLSFKEEVDTDGNNNQEEVAEELPDETLSKKKNSGFLSIGGMKLYTQDLSDEGSDDQSASESLHD---ETSE-  266 (695)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~gflsigg~k~~t~d~s~~esd~~~~~~~~~e---~~~~-  266 (695)
                      +...+ ++.-..+-+.+...+..|.|+..++   ...+.+++|++|+++++|+.++|..|++.+.+.-+++.   .-+. 
T Consensus       194 ~~~~~-~~~~kk~~~k~~y~t~eEl~~~g~~---~~~~~~~~~~vid~~g~~~~vvs~~~~~~~~~~~~~d~v~~~pel~  269 (767)
T KOG2184|consen  194 SKGRK-GSEKKKKGVKTSYRTVEELMAKGLK---QESKFLSGVKVIDMTGPEKRVVSGYESLLEEEKASDDGVPQRPELQ  269 (767)
T ss_pred             ccccc-ChhhccCccchhhccHHHHHhcccc---chhhhccCceeeccCCcceeeehhhhcchhhhcCCccccccccchh
Confidence            55555 4444555666666677777777654   35789999999999999999999999976655222221   1111 


Q ss_pred             -----cCCCCCCCCCCCCCCcccChHHHHHHHhhcCCccccccchhhhcccCCC---CCCCCCCCCCC-cchhhhhhhhh
Q 043289          267 -----SYSEGDGSEDLSDSDSVIDEEVAEDYVEGIGGSDNVLDAKWLVEQDFDG---SDDDSSSSSGF-DGTVEKLSGIA  337 (695)
Q Consensus       267 -----~~s~s~~~~~~s~~ds~iDde~~~dyl~g~Gg~e~~L~~kwl~~~~~~~---s~~~~~~~~~~-d~~~~~l~g~~  337 (695)
                           ..+..+...+.++.+.-++.+++.+|..++++.++.|++.|+..+.+..   +-++.|.+... ..++..| ++-
T Consensus       270 hnl~~~v~~~E~~i~~~~~~lr~e~~~~~~le~~~e~~~~~~~~~~~~~~~l~~~~e~v~~~e~~~~~~~~tld~~-~~~  348 (767)
T KOG2184|consen  270 HNLQLLVSLQESQIRRSDRQLRIERDQALNLEKEIEKLEEELDLEKTHEQSLRKVEESVDEAELDVSSKRLTLDEL-AIL  348 (767)
T ss_pred             hhhHHHhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhccCCccccHHHH-HHH
Confidence                 7788888889999999999999999999999999999999988876655   33333333222 2466555 788


Q ss_pred             hhhhhhhhcCCCCCCcccccCCCCCCcccccccccccc-Cccch---hhccccccCCCCCchhh---HHhhhhccCCcch
Q 043289          338 IQEASREYGMKKPLPLSRKKYSTGDSCSFALDDLMFVK-DPRVF---SAKKKHVAQLPQSWPRE---AQKSKKSRNLPGA  410 (695)
Q Consensus       338 ~~~as~~yg~k~~~s~~~~k~~~~~~~~~~LDdl~l~~-D~r~~---~~~kK~~s~l~~sw~~~---~~ksk~~~~~prE  410 (695)
                      |.+...+|+++...- +.-..+++...|+..+.|++.+ +....   -...|.+..|+++|+..   ..+.+......+.
T Consensus       349 fe~L~~eY~~~~~~~-~l~~~a~~i~~pL~~~~~~~Wdpl~d~~~g~e~i~~wk~lL~~~~~~~~~~~~~~~~~li~e~~  427 (767)
T KOG2184|consen  349 FELLRMEYPEEYTLK-SLSSIAVSIVLPLLKRYLKFWDPLEDPYSGLESISKWKALLEQSDDLRKRDEIDPYSSLIWEGV  427 (767)
T ss_pred             HHHhhhhcccccccc-ccccchhhhhhHHHHHHhhccCcccCccchhHHHHHHHhhhhhhccchhhccccccceeeeeee
Confidence            999999999665543 3334444444577778888776 33332   24556778899999998   6667777777889


Q ss_pred             hhhhHHHHHHHHHHhhhccCCCChHHHHHHHHHHHhcCCceeeeCCCCccchHHHHHHHHHhCCcccccCCCcceEEEEE
Q 043289          411 KKKHRKEMIAVKRRERMLRRGVDLEDINSTLEQIVLEEVDMFSFQPMHHRDCSQVRRLAAIYRLRSDSQGSGKKRFVTVT  490 (695)
Q Consensus       411 KKK~RK~ere~kRaqgmL~rG~dLedI~~EIe~FL~d~~dsLsFPPMDk~~RK~VH~LA~~YnLKSkS~GkGkkRfpvL~  490 (695)
                      =+++||+.++..+.+.+++.+..|+.++-.|..||++.+..-++-||.+.+|.+...|+..+-+.|   +-+..-+++..
T Consensus       428 ~p~vr~~~l~~w~~~d~~~m~~lle~W~~~lp~~VldnIl~~~v~pkl~~~v~~W~p~~d~~~i~s---wi~pwl~il~~  504 (767)
T KOG2184|consen  428 MPKVRKAELATWEPRDMLPMLSLLEAWVPLLPSWVLDNILDQLVLPKLSAAVSQWDPLTDTVPIHS---WIHPWLPILGQ  504 (767)
T ss_pred             cHHHHHHHHhccCccchhHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhcccccce---eeecchHHHhh
Confidence            999999999999999999999999999999999999998877888899999999999999999999   55555555555


Q ss_pred             ecCCCCCCCchhHHHHHHHHhcCCCcccccc-ccCCCccccCcc-ccCCcCCccccccCCC-CcccccCCCCCCccCCCC
Q 043289          491 RTQHTCMPSSADRLRLEKLIGAGNEDIDFAI-TEGPYTKSANAD-RKSSKSSKSVTVHGNS-GKASKKKGSGKKVAYANQ  567 (695)
Q Consensus       491 KTkrT~~ps~~~~~rIekLL~~~~~~e~F~V-td~dl~~e~np~-RrR~kqsKe~a~y~d~-~d~erkk~ggkkg~~~sa  567 (695)
                      |+-. ++|..-.+..|...+-.....-.|.+ ..|  +..|.+. .++.   .++.++.-- ..-++.....+...+..-
T Consensus       505 r~~~-l~~~i~~Kls~~l~~W~p~d~sa~~~l~pW--K~~f~~~~~~~~---~~~~ivpkl~~~l~e~~inp~~q~l~~~  578 (767)
T KOG2184|consen  505 RLES-LYPSIRSKLSIALDAWHPSDRSAIAILSPW--KTVFDAASWKEF---MRRYIVPKLQLALDELQINPMNQDLERF  578 (767)
T ss_pred             hHHH-hhhHHHHHHHHHhhcCCCcccCchhhhccc--hhccchhhHHHH---HhhcccccHHHHhhhhccCccccchhhh
Confidence            6555 55532222222222211111111221 111  1111110 0000   111111000 000011222233455667


Q ss_pred             CccccccCcccccccccccccccccccccc--c------CCCccccccCCccccCCcHHHHHHHhcCCCCCCCCCCCCCC
Q 043289          568 PMSFVSSGILQSDSVEIRTVDAVDINETCE--S------KGTVSSTQIGAFEVHTKGFGSKMMAKMGYVEGGGLGKDGQG  639 (695)
Q Consensus       568 PVsFVsgGv~~ge~~e~~~~deed~~e~~~--~------~g~~~~~~~Ga~E~~t~giG~kMLeKMGW~~GkGLGk~~qG  639 (695)
                      ++.|+..|.++........       +...  +      .... ..+. ..|+++-..|-|+|-.|+...+-+++.+..+
T Consensus       579 ~~v~~w~~~i~~~~~~~l~-------~~hffpkwl~~l~~WL~-n~p~-~~Ei~~wy~gwK~~~~~~ll~~~~v~~~~k~  649 (767)
T KOG2184|consen  579 TWVMEWKGLIDPHLMAQLL-------ERHFFPKWLNVLYHWLS-NSPD-YDEISRWYTGWKSMFPQELLANPYVKDKFKR  649 (767)
T ss_pred             hhhhhhhcccCHHHHHHHH-------HHhhhHHHHHHHHHHhc-CCCc-hHHHHHHHHhHHHhccHhhhcCchhhhhhhh
Confidence            7888888877765321100       0000  0      0000 1112 6689999999999999999999999999999


Q ss_pred             cccceEEeeecCCccceeccCCCCCchhhhcc
Q 043289          640 MSKPIEAIQRPKKLGLGVEFSNTDDDSARKES  671 (695)
Q Consensus       640 I~ePIea~vk~~r~GLGa~~~~~~~d~~~~~e  671 (695)
                      +..++...+.+  .+|+......+.++.++.+
T Consensus       650 ~ld~~~r~~~~--~~l~~p~a~d~~~~~~~~~  679 (767)
T KOG2184|consen  650 GLDMMNRAVER--LELGQPFAIDNIQPSPQSP  679 (767)
T ss_pred             hHHHHHHhhcc--cccCCCccccccCCCCCCC
Confidence            99999999888  5555555544445555443

>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain	Back alignment and domain information

>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification]	Back alignment and domain information

>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF)	Back alignment and domain information

>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function	Back alignment and domain information

>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases	Back alignment and domain information

>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins	Back alignment and domain information

>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids	Back alignment and domain information

>smart00443 G_patch glycine rich nucleic binding domain	Back alignment and domain information

>cd02325 R3H R3H domain	Back alignment and domain information

>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins	Back alignment and domain information

>smart00393 R3H Putative single-stranded nucleic acids-binding domain	Back alignment and domain information

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]	Back alignment and domain information

>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function	Back alignment and domain information

>PF12457 TIP_N: Tuftelin interacting protein N terminal ; InterPro: IPR022159 This domain family is found in eukaryotes, and is typically between 99 and 114 amino acids in length	Back alignment and domain information

>KOG2809 consensus Telomerase elongation inhibitor/RNA maturation protein PINX1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>cd02643 R3H_NF-X1 R3H domain of the X1 box binding protein (NF-X1) and related proteins	Back alignment and domain information

>PF12656 G-patch_2: DExH-box splicing factor binding site	Back alignment and domain information

>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]	Back alignment and domain information

>cd02644 R3H_jag R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ	Back alignment and domain information

>cd02636 R3H_sperm-antigen R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7	Back alignment and domain information

>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain	Back alignment and domain information

>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]	Back alignment and domain information

>cd02645 R3H_AAA R3H domain of a group of proteins with unknown function, who also contain a AAA-ATPase (AAA) domain	Back alignment and domain information

>KOG1996 consensus mRNA splicing factor [RNA processing and modification]	Back alignment and domain information

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]	Back alignment and domain information

>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]	Back alignment and domain information

>cd02638 R3H_unknown_1 R3H domain of a group of eukaryotic proteins with unknown function	Back alignment and domain information

>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only]	Back alignment and domain information

>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]	Back alignment and domain information

>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]	Back alignment and domain information

>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]	Back alignment and domain information

>COG1847 Jag Predicted RNA-binding protein [General function prediction only]	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]	Back alignment and domain information

>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		695
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 56.0 bits (134), Expect = 4e-08
 Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 41/198 (20%)

Query: 409 GAKKKHRKEMIAVKRRERMLRRGVDLEDINSTLEQIVL-EEVDMFSFQPMHHRDCSQVRR 467
           G  +   K++++V           D +D+    + I+  EE+D            S   R
Sbjct: 12  GEHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSK--DAV-SGTLR 66

Query: 468 LAAIYRLRSDSQGSGKKRFVT----------VTRTQHTCMPSSADRLR----LEKLIGAG 513
           L          Q    ++FV           ++  +      S          ++L    
Sbjct: 67  LFWTLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 514 NEDIDFAIT-EGPYTKSANADRKSSKSSKSVTVHGNSGKASKKKGSGKKVAYANQPMSFV 572
                + ++   PY K   A     + +K+V + G         GSGK     +      
Sbjct: 124 QVFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDG-------VLGSGKTWVALD------ 169

Query: 573 SSGILQSDSVEIRTVDAV 590
              +  S  V+ +    +
Sbjct: 170 ---VCLSYKVQCKMDFKI 184

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		695
1msz_A		86	DNA-binding protein smubp-2; R3H fold; NMR {Homo s	99.09
1whr_A		124	Hypothetical KIAA1002 protein; R3H domain, structu	98.63
2cpm_A		94	Sperm-associated antigen 7; R3H domain, structural	98.47
3gku_A		225	Probable RNA-binding protein; APC21302, clostridiu	95.33

>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1	Back alignment and structure

>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		695
d1msza_		62	d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId	1e-06

>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 62	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: R3H domain
family: R3H domain
domain: SmuBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 434 LEDINSTLEQIVLEEVDMFSFQP-MHHRDCSQVRRLAAIYRLRSDSQGSGKKRFVTVTRT 492
           ++   + + + +  +     F P ++  D  +V ++A  + LR DS G GK+RF+TV++ 
Sbjct: 2   VDHFRAMIVEFMASKKMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSKR 61

PyMOL of d1msza_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		695
d1msza_		62	SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1whra_		124	R3H domain protein KIAA1002 {Human (Homo sapiens)	99.11
d1ug8a_		87	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	91.83

>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: R3H domain
family: R3H domain
domain: SmuBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.8e-13  Score=108.69  Aligned_cols=60  Identities=27%  Similarity=0.520  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHhcCCceeeeCC-CCccchHHHHHHHHHhCCcccccCCCcceEEEEEecC
Q 043289          434 LEDINSTLEQIVLEEVDMFSFQP-MHHRDCSQVRRLAAIYRLRSDSQGSGKKRFVTVTRTQ  493 (695)
Q Consensus       434 LedI~~EIe~FL~d~~dsLsFPP-MDk~~RK~VH~LA~~YnLKSkS~GkGkkRfpvL~KTk  493 (695)
                      |+++...|.+||.+....+.||| |++..|+.||.||..|+|+|.|.|.|..||++|+|+.
T Consensus         2 ~~~~~~~i~~Fv~s~~~~~~f~p~m~~~~R~~vH~lA~~~gl~s~S~G~~~~R~v~v~kk~   62 (62)
T d1msza_           2 VDHFRAMIVEFMASKKMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSKRA   62 (62)
T ss_dssp             CHHHHHHHHHHHHHTCSEEEECTTCCSHHHHHHHHHHHHTTEEEEEECSSSCCEEEEEECC
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEcCCCCcEEEEEeCC
Confidence            68999999999999999999999 9999999999999999999999999999999999973

PyMOL of d1msza_

>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure